Query 007324
Match_columns 608
No_of_seqs 34 out of 36
Neff 2.8
Searched_HMMs 46136
Date Thu Mar 28 22:01:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007324.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007324hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09787 Golgin_A5: Golgin sub 99.9 6.1E-26 1.3E-30 240.0 25.9 255 332-587 93-431 (511)
2 KOG4677 Golgi integral membran 99.9 1.8E-24 4E-29 227.1 24.8 247 305-586 133-469 (554)
3 TIGR02169 SMC_prok_A chromosom 98.5 0.003 6.6E-08 71.4 41.9 22 272-293 187-208 (1164)
4 TIGR02168 SMC_prok_B chromosom 98.4 0.0037 7.9E-08 70.2 37.9 13 309-321 703-715 (1179)
5 KOG0161 Myosin class II heavy 98.4 0.0048 1E-07 76.3 41.1 336 248-592 1041-1423(1930)
6 TIGR02168 SMC_prok_B chromosom 98.3 0.017 3.6E-07 65.1 42.2 14 245-258 153-166 (1179)
7 PF07888 CALCOCO1: Calcium bin 98.2 0.017 3.6E-07 64.4 39.3 90 493-589 366-458 (546)
8 PF07888 CALCOCO1: Calcium bin 98.2 0.0063 1.4E-07 67.6 33.9 58 410-474 328-385 (546)
9 KOG0161 Myosin class II heavy 98.2 0.019 4.1E-07 71.3 40.9 320 266-586 1193-1543(1930)
10 PRK02224 chromosome segregatio 98.1 0.043 9.3E-07 62.0 42.0 51 427-477 511-561 (880)
11 TIGR00606 rad50 rad50. This fa 98.0 0.057 1.2E-06 64.6 38.2 136 313-466 794-929 (1311)
12 PRK02224 chromosome segregatio 98.0 0.057 1.2E-06 61.0 43.0 47 544-590 512-558 (880)
13 PF12128 DUF3584: Protein of u 97.8 0.19 4.1E-06 60.0 42.9 77 306-382 315-391 (1201)
14 COG1196 Smc Chromosome segrega 97.6 0.31 6.6E-06 58.0 41.0 136 227-376 145-286 (1163)
15 PF12128 DUF3584: Protein of u 97.6 0.27 6E-06 58.7 34.8 79 492-571 470-549 (1201)
16 PF00261 Tropomyosin: Tropomyo 97.6 0.095 2.1E-06 51.8 26.1 134 422-555 96-236 (237)
17 COG1196 Smc Chromosome segrega 97.4 0.49 1.1E-05 56.4 38.8 28 561-588 983-1010(1163)
18 PF00038 Filament: Intermediat 97.4 0.18 4E-06 50.4 30.6 86 385-476 168-253 (312)
19 PRK09039 hypothetical protein; 97.3 0.018 3.9E-07 60.2 18.6 61 273-333 43-103 (343)
20 TIGR00606 rad50 rad50. This fa 97.3 0.72 1.6E-05 55.6 40.0 54 427-480 876-929 (1311)
21 PRK04863 mukB cell division pr 97.3 0.92 2E-05 56.1 41.5 48 279-326 289-336 (1486)
22 PRK09039 hypothetical protein; 96.9 0.1 2.3E-06 54.6 19.8 56 421-476 112-167 (343)
23 KOG4674 Uncharacterized conser 96.9 2.3 5E-05 53.6 41.7 279 307-590 160-503 (1822)
24 KOG0971 Microtubule-associated 96.8 1.7 3.7E-05 51.8 39.6 260 283-555 255-546 (1243)
25 PF09726 Macoilin: Transmembra 96.8 1.2 2.7E-05 51.2 28.3 32 445-476 544-575 (697)
26 TIGR02680 conserved hypothetic 96.8 1.4 3.1E-05 53.7 30.2 117 283-404 742-862 (1353)
27 PF00038 Filament: Intermediat 96.8 0.67 1.5E-05 46.4 32.4 62 343-405 82-143 (312)
28 PF05701 WEMBL: Weak chloropla 96.8 1.2 2.6E-05 49.2 38.5 155 311-484 172-333 (522)
29 PF15619 Lebercilin: Ciliary p 96.8 0.39 8.5E-06 47.2 21.0 176 263-473 6-191 (194)
30 PF00261 Tropomyosin: Tropomyo 96.6 0.86 1.9E-05 45.2 25.8 21 382-402 88-108 (237)
31 PRK11637 AmiB activator; Provi 96.6 1.3 2.8E-05 47.1 25.8 86 280-369 44-129 (428)
32 PF10174 Cast: RIM-binding pro 96.6 2.2 4.8E-05 49.8 40.6 98 306-404 240-340 (775)
33 PF10174 Cast: RIM-binding pro 96.5 2.4 5.3E-05 49.5 36.5 190 332-528 381-599 (775)
34 PF15619 Lebercilin: Ciliary p 96.5 0.47 1E-05 46.7 19.7 161 437-597 3-178 (194)
35 KOG0933 Structural maintenance 96.5 3.2 7E-05 49.9 31.5 227 345-591 703-942 (1174)
36 KOG0612 Rho-associated, coiled 96.4 3.6 7.7E-05 50.3 31.6 197 247-471 542-739 (1317)
37 PF05701 WEMBL: Weak chloropla 96.4 2.1 4.5E-05 47.4 39.1 29 446-474 235-263 (522)
38 KOG0996 Structural maintenance 96.4 3.3 7.2E-05 50.4 28.6 204 336-567 858-1086(1293)
39 PF13514 AAA_27: AAA domain 96.4 3.3 7.2E-05 49.3 33.3 137 430-569 785-931 (1111)
40 PRK11637 AmiB activator; Provi 96.4 1.8 3.9E-05 46.1 28.2 49 423-471 80-128 (428)
41 COG4942 Membrane-bound metallo 96.2 2.5 5.4E-05 46.5 25.0 167 283-453 38-231 (420)
42 TIGR02680 conserved hypothetic 96.2 4.6 9.9E-05 49.5 29.4 8 150-157 636-643 (1353)
43 PF09726 Macoilin: Transmembra 96.1 3.7 8.1E-05 47.4 31.2 89 273-368 422-513 (697)
44 KOG4643 Uncharacterized coiled 96.1 4.8 0.0001 48.5 36.5 317 260-586 175-602 (1195)
45 KOG0994 Extracellular matrix g 96.1 5.3 0.00012 49.0 34.7 229 247-480 1204-1484(1758)
46 PF13514 AAA_27: AAA domain 96.0 5.1 0.00011 47.8 36.9 96 409-512 527-622 (1111)
47 KOG0994 Extracellular matrix g 96.0 6 0.00013 48.6 32.5 38 549-586 1711-1748(1758)
48 PF01576 Myosin_tail_1: Myosin 95.9 0.0019 4.2E-08 74.2 0.0 99 495-593 465-591 (859)
49 TIGR03007 pepcterm_ChnLen poly 95.8 2.6 5.6E-05 45.1 22.5 35 559-593 352-386 (498)
50 KOG4673 Transcription factor T 95.8 5.4 0.00012 46.7 28.9 72 496-567 864-937 (961)
51 KOG0995 Centromere-associated 95.8 4.7 0.0001 45.9 36.9 290 269-572 221-570 (581)
52 KOG0977 Nuclear envelope prote 95.8 4.6 0.0001 45.8 27.0 94 306-399 108-217 (546)
53 PRK03918 chromosome segregatio 95.7 5 0.00011 45.6 37.6 28 544-571 669-696 (880)
54 PRK11281 hypothetical protein; 95.7 7.4 0.00016 47.3 29.3 65 410-474 197-262 (1113)
55 PRK11281 hypothetical protein; 95.7 7.4 0.00016 47.3 27.7 51 549-599 286-336 (1113)
56 PF07111 HCR: Alpha helical co 95.5 3.5 7.6E-05 47.9 23.2 173 287-473 475-652 (739)
57 TIGR01005 eps_transp_fam exopo 95.5 1.4 3E-05 49.8 20.0 32 343-374 194-225 (754)
58 PHA02562 46 endonuclease subun 95.4 3.5 7.6E-05 44.3 21.9 34 544-577 368-401 (562)
59 PRK03918 chromosome segregatio 95.1 8.1 0.00017 44.0 39.0 25 306-330 202-226 (880)
60 PHA02562 46 endonuclease subun 94.8 6.9 0.00015 42.1 27.7 65 343-408 213-277 (562)
61 PF01576 Myosin_tail_1: Myosin 94.8 0.008 1.7E-07 69.3 0.0 131 437-567 192-347 (859)
62 PF09755 DUF2046: Uncharacteri 94.8 6.9 0.00015 41.7 31.3 109 279-411 23-138 (310)
63 PRK10698 phage shock protein P 94.7 5.2 0.00011 39.9 20.4 59 289-347 30-88 (222)
64 TIGR01843 type_I_hlyD type I s 94.4 5.5 0.00012 40.7 19.1 32 444-475 244-275 (423)
65 PF08614 ATG16: Autophagy prot 94.1 0.26 5.6E-06 47.4 8.5 95 273-378 85-179 (194)
66 PF08614 ATG16: Autophagy prot 94.1 0.24 5.2E-06 47.6 8.3 144 449-595 27-177 (194)
67 PF15070 GOLGA2L5: Putative go 94.1 14 0.0003 42.4 36.9 149 416-578 158-309 (617)
68 TIGR01843 type_I_hlyD type I s 93.4 7.7 0.00017 39.6 18.0 22 565-586 249-270 (423)
69 COG1579 Zn-ribbon protein, pos 93.4 7.7 0.00017 39.9 17.8 130 273-405 21-150 (239)
70 KOG0980 Actin-binding protein 93.2 24 0.00052 42.4 31.7 59 437-499 478-537 (980)
71 KOG0612 Rho-associated, coiled 92.9 31 0.00068 42.7 38.7 77 295-379 499-578 (1317)
72 PF12718 Tropomyosin_1: Tropom 92.8 8.7 0.00019 36.2 17.8 87 388-476 51-138 (143)
73 PF07926 TPR_MLP1_2: TPR/MLP1/ 92.6 8.3 0.00018 35.4 16.8 62 490-555 58-119 (132)
74 PF04012 PspA_IM30: PspA/IM30 92.3 11 0.00025 36.4 21.5 77 293-369 33-110 (221)
75 PF05557 MAD: Mitotic checkpoi 92.3 0.38 8.2E-06 54.5 7.6 245 273-530 261-535 (722)
76 PRK04863 mukB cell division pr 92.1 42 0.0009 42.4 38.6 25 562-586 596-620 (1486)
77 KOG0977 Nuclear envelope prote 91.9 27 0.00059 39.9 28.9 188 289-480 41-235 (546)
78 PF09730 BicD: Microtubule-ass 91.9 31 0.00068 40.5 39.3 302 280-585 45-463 (717)
79 COG1579 Zn-ribbon protein, pos 91.9 17 0.00037 37.5 18.3 99 437-536 36-134 (239)
80 PF12795 MscS_porin: Mechanose 91.8 14 0.00031 36.5 17.4 131 423-562 83-213 (240)
81 TIGR01005 eps_transp_fam exopo 91.6 29 0.00062 39.6 24.6 196 275-476 193-406 (754)
82 KOG0250 DNA repair protein RAD 91.5 41 0.00089 41.2 27.5 205 275-483 227-438 (1074)
83 KOG1029 Endocytic adaptor prot 91.1 41 0.0009 40.4 29.1 98 427-527 418-515 (1118)
84 PF12718 Tropomyosin_1: Tropom 91.1 14 0.0003 34.9 17.2 34 446-479 35-68 (143)
85 COG4942 Membrane-bound metallo 90.9 30 0.00065 38.5 25.8 186 278-470 61-255 (420)
86 TIGR03007 pepcterm_ChnLen poly 90.8 26 0.00057 37.6 21.9 27 345-371 163-189 (498)
87 PF15070 GOLGA2L5: Putative go 90.7 37 0.0008 39.2 30.0 53 423-475 179-231 (617)
88 TIGR01010 BexC_CtrB_KpsE polys 90.7 17 0.00037 37.7 17.0 135 444-595 168-311 (362)
89 PF07926 TPR_MLP1_2: TPR/MLP1/ 90.5 14 0.0003 33.9 16.5 118 340-465 14-131 (132)
90 KOG4674 Uncharacterized conser 90.4 66 0.0014 41.5 43.1 202 333-538 728-952 (1822)
91 PF05557 MAD: Mitotic checkpoi 90.3 0.082 1.8E-06 59.6 0.0 88 494-585 284-394 (722)
92 KOG0250 DNA repair protein RAD 90.3 53 0.0012 40.3 26.8 209 245-476 177-388 (1074)
93 PF08317 Spc7: Spc7 kinetochor 90.2 12 0.00026 39.0 15.3 123 274-404 147-269 (325)
94 PF00769 ERM: Ezrin/radixin/mo 90.0 14 0.00029 37.6 15.3 115 421-535 8-126 (246)
95 PRK10929 putative mechanosensi 89.8 59 0.0013 40.0 28.4 51 549-599 266-316 (1109)
96 KOG0971 Microtubule-associated 89.4 61 0.0013 39.6 29.7 190 309-541 229-425 (1243)
97 TIGR02977 phageshock_pspA phag 89.1 25 0.00053 34.8 22.6 56 292-347 33-88 (219)
98 PRK09841 cryptic autophosphory 88.7 24 0.00052 40.5 17.7 31 446-476 267-297 (726)
99 PF05622 HOOK: HOOK protein; 87.8 0.16 3.5E-06 57.3 0.0 193 274-473 289-522 (713)
100 TIGR03185 DNA_S_dndD DNA sulfu 87.7 55 0.0012 37.1 32.2 32 343-374 216-247 (650)
101 PF00769 ERM: Ezrin/radixin/mo 87.0 38 0.00082 34.5 17.0 122 445-591 4-125 (246)
102 COG1842 PspA Phage shock prote 86.9 38 0.00083 34.4 19.3 139 299-452 40-186 (225)
103 KOG0980 Actin-binding protein 86.9 83 0.0018 38.2 28.0 147 437-587 408-568 (980)
104 PRK15178 Vi polysaccharide exp 86.5 59 0.0013 36.2 19.4 140 384-538 240-391 (434)
105 PRK10476 multidrug resistance 86.3 39 0.00084 34.8 16.0 29 449-477 117-145 (346)
106 KOG1029 Endocytic adaptor prot 85.1 98 0.0021 37.5 22.2 81 495-575 455-544 (1118)
107 PF04012 PspA_IM30: PspA/IM30 84.6 41 0.00089 32.7 22.5 42 423-464 103-144 (221)
108 TIGR02977 phageshock_pspA phag 83.1 44 0.00096 33.0 14.2 29 456-484 55-83 (219)
109 PF04156 IncA: IncA protein; 83.0 42 0.00092 31.7 16.8 92 423-531 79-170 (191)
110 COG3206 GumC Uncharacterized p 81.5 83 0.0018 34.0 21.9 69 384-454 200-268 (458)
111 PRK11519 tyrosine kinase; Prov 81.2 1.1E+02 0.0024 35.3 18.4 16 91-106 86-101 (719)
112 PF04849 HAP1_N: HAP1 N-termin 80.4 50 0.0011 35.4 14.2 121 446-567 167-302 (306)
113 PF05622 HOOK: HOOK protein; 80.3 0.54 1.2E-05 53.3 0.0 17 576-592 540-556 (713)
114 PRK10246 exonuclease subunit S 80.0 1.5E+02 0.0032 36.0 39.1 80 437-516 715-802 (1047)
115 PF12761 End3: Actin cytoskele 79.1 21 0.00045 36.0 10.5 94 420-524 98-193 (195)
116 KOG0933 Structural maintenance 77.9 1.9E+02 0.0041 36.0 32.5 134 345-478 743-882 (1174)
117 PF12325 TMF_TATA_bd: TATA ele 77.6 24 0.00052 32.9 9.8 83 494-587 26-110 (120)
118 KOG0249 LAR-interacting protei 77.3 1.7E+02 0.0037 35.2 23.3 82 451-532 161-257 (916)
119 PF12777 MT: Microtubule-bindi 77.0 17 0.00036 38.2 9.6 93 496-589 219-311 (344)
120 PF07200 Mod_r: Modifier of ru 76.4 34 0.00073 31.4 10.4 104 292-399 6-109 (150)
121 PF09738 DUF2051: Double stran 76.3 1.1E+02 0.0024 32.5 16.5 181 398-593 1-250 (302)
122 PRK10884 SH3 domain-containing 75.7 18 0.0004 36.2 9.1 31 345-375 134-164 (206)
123 PRK10246 exonuclease subunit S 75.1 2E+02 0.0044 34.9 35.6 26 336-361 216-241 (1047)
124 TIGR01000 bacteriocin_acc bact 74.4 1.3E+02 0.0029 32.5 22.1 29 450-478 288-316 (457)
125 TIGR00618 sbcc exonuclease Sbc 73.2 2.2E+02 0.0047 34.3 35.7 34 546-579 442-476 (1042)
126 COG1566 EmrA Multidrug resista 72.8 48 0.001 35.8 11.9 67 433-506 92-159 (352)
127 PF10186 Atg14: UV radiation r 72.6 1E+02 0.0022 30.3 14.6 26 342-367 83-108 (302)
128 PRK04778 septation ring format 72.4 1.7E+02 0.0038 32.9 31.9 253 247-509 168-466 (569)
129 PF10186 Atg14: UV radiation r 71.9 1.1E+02 0.0023 30.2 18.2 82 455-536 22-108 (302)
130 PF09789 DUF2353: Uncharacteri 71.6 80 0.0017 34.1 13.0 89 450-538 90-180 (319)
131 PF14915 CCDC144C: CCDC144C pr 71.5 1.5E+02 0.0034 32.0 25.0 194 269-476 49-244 (305)
132 PF04111 APG6: Autophagy prote 71.1 71 0.0015 33.7 12.5 75 458-536 14-88 (314)
133 TIGR01000 bacteriocin_acc bact 71.1 1.6E+02 0.0034 31.9 20.1 43 545-587 273-316 (457)
134 PF13851 GAS: Growth-arrest sp 70.8 1.2E+02 0.0025 30.2 22.1 71 499-569 101-171 (201)
135 TIGR03017 EpsF chain length de 70.6 1.5E+02 0.0032 31.4 24.2 196 270-477 165-373 (444)
136 PF05278 PEARLI-4: Arabidopsis 70.4 1.4E+02 0.003 31.8 14.2 57 427-483 209-265 (269)
137 PF05911 DUF869: Plant protein 69.5 2.5E+02 0.0055 33.6 20.8 190 281-476 500-703 (769)
138 TIGR02231 conserved hypothetic 69.5 74 0.0016 35.0 12.7 35 495-529 135-169 (525)
139 KOG2991 Splicing regulator [RN 69.4 1.1E+02 0.0023 33.0 13.1 27 150-176 26-52 (330)
140 PF11559 ADIP: Afadin- and alp 68.8 77 0.0017 29.3 10.9 85 268-352 65-149 (151)
141 PF14817 HAUS5: HAUS augmin-li 68.5 1.3E+02 0.0029 35.0 14.9 112 410-524 317-429 (632)
142 PF11559 ADIP: Afadin- and alp 67.6 1E+02 0.0023 28.5 13.1 61 270-330 29-92 (151)
143 PF15254 CCDC14: Coiled-coil d 67.3 2.6E+02 0.0056 34.0 16.8 44 15-58 12-59 (861)
144 PF08826 DMPK_coil: DMPK coile 67.0 29 0.00062 29.3 6.9 44 494-537 14-57 (61)
145 TIGR00998 8a0101 efflux pump m 66.4 1.5E+02 0.0033 29.9 14.0 24 452-475 114-137 (334)
146 PF15035 Rootletin: Ciliary ro 66.4 42 0.00091 33.1 9.1 23 433-455 17-39 (182)
147 COG2433 Uncharacterized conser 66.4 2.7E+02 0.0059 32.9 18.0 78 492-569 423-502 (652)
148 PF11932 DUF3450: Protein of u 65.5 96 0.0021 31.1 11.6 81 313-393 30-116 (251)
149 PF10498 IFT57: Intra-flagella 65.5 2.1E+02 0.0045 31.2 15.4 84 388-476 268-351 (359)
150 PF12004 DUF3498: Domain of un 64.6 2.2 4.7E-05 47.7 0.0 65 385-451 407-477 (495)
151 TIGR02473 flagell_FliJ flagell 64.1 1.1E+02 0.0023 27.3 12.2 92 437-532 11-102 (141)
152 PF10473 CENP-F_leu_zip: Leuci 62.9 1.5E+02 0.0032 28.6 18.8 80 440-536 11-90 (140)
153 PRK10884 SH3 domain-containing 62.5 1.2E+02 0.0026 30.6 11.6 77 496-576 91-167 (206)
154 PF09755 DUF2046: Uncharacteri 62.5 2.3E+02 0.0051 30.7 26.5 111 306-419 79-192 (310)
155 TIGR03017 EpsF chain length de 62.4 2.1E+02 0.0047 30.3 25.0 59 544-603 321-382 (444)
156 PF12325 TMF_TATA_bd: TATA ele 62.1 1.2E+02 0.0025 28.5 10.6 92 277-376 17-108 (120)
157 PRK09343 prefoldin subunit bet 61.9 1.3E+02 0.0028 27.7 10.8 87 492-589 15-112 (121)
158 PF06818 Fez1: Fez1; InterPro 61.2 2E+02 0.0043 29.5 18.6 67 306-376 33-99 (202)
159 PF06005 DUF904: Protein of un 60.4 63 0.0014 27.8 8.0 57 421-477 7-63 (72)
160 PF10498 IFT57: Intra-flagella 60.3 1.9E+02 0.0041 31.5 13.3 96 304-399 234-348 (359)
161 COG0419 SbcC ATPase involved i 60.2 3.6E+02 0.0077 32.1 40.8 24 274-297 230-253 (908)
162 KOG0982 Centrosomal protein Nu 59.3 3.2E+02 0.0069 31.3 20.0 79 286-368 246-332 (502)
163 PF05667 DUF812: Protein of un 59.0 3.4E+02 0.0074 31.5 17.5 88 498-585 426-528 (594)
164 PF08581 Tup_N: Tup N-terminal 58.6 93 0.002 27.3 8.8 69 456-537 7-75 (79)
165 PF05103 DivIVA: DivIVA protei 58.6 7 0.00015 34.5 2.1 99 427-537 27-125 (131)
166 PF07321 YscO: Type III secret 58.3 1.8E+02 0.004 28.2 12.1 83 454-536 26-112 (152)
167 COG4913 Uncharacterized protei 58.1 4.3E+02 0.0094 32.4 18.0 54 418-472 678-731 (1104)
168 KOG0963 Transcription factor/C 58.0 3.8E+02 0.0082 31.7 29.9 180 343-537 145-342 (629)
169 PF06705 SF-assemblin: SF-asse 57.2 2.2E+02 0.0047 28.6 19.2 127 279-412 88-223 (247)
170 KOG0996 Structural maintenance 56.9 5.2E+02 0.011 32.9 32.2 83 496-586 477-559 (1293)
171 PF02403 Seryl_tRNA_N: Seryl-t 56.6 1.1E+02 0.0023 26.7 9.0 71 306-377 31-101 (108)
172 KOG2129 Uncharacterized conser 56.2 2.5E+02 0.0054 32.1 13.5 56 487-549 249-308 (552)
173 PRK09343 prefoldin subunit bet 56.0 1.6E+02 0.0035 27.0 10.4 52 332-383 67-118 (121)
174 PF06818 Fez1: Fez1; InterPro 55.7 2.5E+02 0.0053 28.8 22.2 33 338-370 5-37 (202)
175 PF06005 DUF904: Protein of un 54.4 66 0.0014 27.7 7.2 28 269-296 11-38 (72)
176 PF09787 Golgin_A5: Golgin sub 54.1 3.6E+02 0.0077 30.2 24.3 27 506-532 356-382 (511)
177 PRK03598 putative efflux pump 54.1 2.6E+02 0.0057 28.6 13.1 24 456-479 110-133 (331)
178 PF01920 Prefoldin_2: Prefoldi 54.0 1.2E+02 0.0025 25.8 8.7 79 301-379 19-105 (106)
179 PF05335 DUF745: Protein of un 53.8 2.5E+02 0.0053 28.2 16.0 41 495-535 134-174 (188)
180 PRK15136 multidrug efflux syst 53.5 3.1E+02 0.0067 29.3 16.0 24 452-475 126-149 (390)
181 PF15294 Leu_zip: Leucine zipp 52.2 2E+02 0.0043 30.7 11.6 85 239-323 78-172 (278)
182 PRK10476 multidrug resistance 51.3 3E+02 0.0064 28.5 13.5 21 309-329 119-139 (346)
183 PF04111 APG6: Autophagy prote 51.0 1.8E+02 0.0039 30.8 11.2 44 493-536 52-95 (314)
184 KOG0993 Rab5 GTPase effector R 50.6 4.4E+02 0.0095 30.2 16.1 111 448-581 102-215 (542)
185 PF02050 FliJ: Flagellar FliJ 50.0 1.5E+02 0.0032 24.6 14.8 83 447-534 6-88 (123)
186 TIGR02338 gimC_beta prefoldin, 49.9 1.9E+02 0.0041 25.8 10.5 48 331-378 62-109 (110)
187 TIGR03185 DNA_S_dndD DNA sulfu 49.7 4.5E+02 0.0097 30.1 35.3 41 496-536 426-466 (650)
188 KOG0964 Structural maintenance 49.7 6.3E+02 0.014 31.8 37.3 201 273-478 269-499 (1200)
189 PF10473 CENP-F_leu_zip: Leuci 49.6 2.5E+02 0.0054 27.1 16.0 52 499-554 88-139 (140)
190 PF04849 HAP1_N: HAP1 N-termin 49.4 3.7E+02 0.0081 29.1 23.5 78 423-517 218-295 (306)
191 PF09304 Cortex-I_coil: Cortex 49.4 2.3E+02 0.005 26.6 10.2 70 332-409 12-81 (107)
192 KOG1003 Actin filament-coating 48.1 3.3E+02 0.0072 28.1 22.6 112 344-467 5-130 (205)
193 TIGR01010 BexC_CtrB_KpsE polys 48.0 3.5E+02 0.0075 28.3 19.3 24 386-409 177-200 (362)
194 KOG1853 LIS1-interacting prote 47.8 3.9E+02 0.0085 28.9 18.8 29 307-335 23-51 (333)
195 PF10212 TTKRSYEDQ: Predicted 47.4 1.1E+02 0.0024 35.1 9.4 82 268-356 433-514 (518)
196 PF09728 Taxilin: Myosin-like 47.1 3.8E+02 0.0082 28.5 35.5 83 389-478 138-227 (309)
197 PF02185 HR1: Hr1 repeat; Int 46.8 1.3E+02 0.0028 24.8 7.6 60 413-475 2-62 (70)
198 PF06120 Phage_HK97_TLTM: Tail 46.4 3.1E+02 0.0067 29.5 12.1 50 274-323 53-107 (301)
199 PRK05689 fliJ flagellar biosyn 45.8 2.4E+02 0.0052 25.8 14.8 98 433-534 10-107 (147)
200 PF11471 Sugarporin_N: Maltopo 45.7 40 0.00086 28.2 4.4 29 450-478 29-57 (60)
201 PRK10361 DNA recombination pro 45.6 5.1E+02 0.011 29.6 20.8 85 388-480 76-160 (475)
202 PF11932 DUF3450: Protein of u 45.4 3.3E+02 0.0072 27.3 13.6 69 496-565 47-115 (251)
203 PF04048 Sec8_exocyst: Sec8 ex 45.3 2.5E+02 0.0055 26.2 10.1 73 280-370 37-113 (142)
204 KOG0243 Kinesin-like protein [ 44.7 7.3E+02 0.016 31.1 17.0 136 306-442 406-556 (1041)
205 TIGR02231 conserved hypothetic 44.2 1.7E+02 0.0036 32.4 10.1 46 333-378 128-173 (525)
206 PF08317 Spc7: Spc7 kinetochor 43.9 4.1E+02 0.0089 27.9 29.6 73 493-570 225-300 (325)
207 PF10267 Tmemb_cc2: Predicted 43.4 2.8E+02 0.0061 30.8 11.6 75 388-476 214-292 (395)
208 TIGR00998 8a0101 efflux pump m 43.3 3.7E+02 0.0079 27.2 14.6 32 449-480 104-135 (334)
209 KOG3850 Predicted membrane pro 43.0 3.2E+02 0.0069 30.9 11.8 79 384-476 258-340 (455)
210 PRK11578 macrolide transporter 42.4 2.9E+02 0.0063 28.8 11.1 82 496-582 97-178 (370)
211 PF04156 IncA: IncA protein; 42.1 3.1E+02 0.0067 26.0 13.8 25 451-475 79-103 (191)
212 PF05529 Bap31: B-cell recepto 41.1 2.4E+02 0.0051 27.2 9.5 84 290-373 89-191 (192)
213 PRK03947 prefoldin subunit alp 41.0 2.9E+02 0.0062 25.3 10.6 42 333-374 91-132 (140)
214 TIGR03794 NHPM_micro_HlyD NHPM 40.9 4.8E+02 0.01 27.9 15.7 24 447-470 228-251 (421)
215 KOG0288 WD40 repeat protein Ti 40.9 5.6E+02 0.012 29.3 13.3 63 309-382 11-73 (459)
216 PF08172 CASP_C: CASP C termin 40.3 2.7E+02 0.006 28.8 10.3 43 496-538 84-127 (248)
217 PF05335 DUF745: Protein of un 40.3 4E+02 0.0087 26.8 18.5 61 336-408 24-89 (188)
218 TIGR02338 gimC_beta prefoldin, 40.1 2.7E+02 0.0059 24.8 11.2 46 489-538 8-53 (110)
219 KOG1937 Uncharacterized conser 39.6 6.6E+02 0.014 29.1 23.0 130 442-587 289-428 (521)
220 COG1842 PspA Phage shock prote 39.5 4.4E+02 0.0095 27.0 21.2 36 427-462 108-143 (225)
221 KOG4196 bZIP transcription fac 39.5 59 0.0013 31.4 5.1 33 506-538 75-107 (135)
222 PF00901 Orbi_VP5: Orbivirus o 39.3 6.7E+02 0.014 29.1 16.6 68 341-408 138-205 (508)
223 PRK13729 conjugal transfer pil 38.9 1.2E+02 0.0025 34.5 8.0 44 520-564 77-120 (475)
224 PF10481 CENP-F_N: Cenp-F N-te 38.5 5.5E+02 0.012 27.9 13.1 85 506-591 40-124 (307)
225 KOG4657 Uncharacterized conser 38.5 4.5E+02 0.0098 27.8 11.4 52 540-595 54-105 (246)
226 KOG4403 Cell surface glycoprot 38.4 6.8E+02 0.015 28.9 16.4 142 373-517 244-409 (575)
227 KOG0018 Structural maintenance 37.6 9.6E+02 0.021 30.4 20.4 179 281-471 267-469 (1141)
228 PF05667 DUF812: Protein of un 37.5 7.3E+02 0.016 29.0 25.0 95 429-536 391-485 (594)
229 PF08826 DMPK_coil: DMPK coile 37.2 1.6E+02 0.0035 24.9 6.8 49 278-326 13-61 (61)
230 PF15035 Rootletin: Ciliary ro 36.1 4.5E+02 0.0097 26.1 16.9 114 283-408 2-131 (182)
231 COG3206 GumC Uncharacterized p 36.0 6E+02 0.013 27.6 22.4 161 310-471 238-398 (458)
232 PRK15422 septal ring assembly 36.0 2.8E+02 0.0061 24.9 8.3 60 270-336 12-71 (79)
233 PRK13428 F0F1 ATP synthase sub 35.8 3.8E+02 0.0083 29.7 11.2 14 469-482 62-75 (445)
234 PF03938 OmpH: Outer membrane 35.8 2.4E+02 0.0052 25.7 8.3 21 452-472 42-62 (158)
235 PRK10361 DNA recombination pro 35.5 7.3E+02 0.016 28.4 21.0 94 306-403 62-157 (475)
236 PRK07720 fliJ flagellar biosyn 35.1 3.6E+02 0.0078 24.7 14.7 92 434-529 11-102 (146)
237 cd00890 Prefoldin Prefoldin is 35.0 3.1E+02 0.0068 24.0 9.5 45 331-375 82-126 (129)
238 PF15066 CAGE1: Cancer-associa 34.7 7.9E+02 0.017 28.6 17.8 108 423-538 388-504 (527)
239 PF13094 CENP-Q: CENP-Q, a CEN 34.6 3.9E+02 0.0085 25.1 12.6 114 419-532 28-156 (160)
240 KOG3809 Microtubule-binding pr 34.3 6.8E+02 0.015 29.0 12.7 54 278-331 509-573 (583)
241 COG4372 Uncharacterized protei 34.0 7.7E+02 0.017 28.2 27.9 43 342-384 108-150 (499)
242 PF04859 DUF641: Plant protein 33.9 3.9E+02 0.0084 25.7 9.5 76 467-550 55-131 (131)
243 KOG0804 Cytoplasmic Zn-finger 33.4 4.8E+02 0.01 30.0 11.4 26 492-517 411-436 (493)
244 KOG0999 Microtubule-associated 33.3 9.1E+02 0.02 28.9 21.8 180 278-465 17-220 (772)
245 PF09486 HrpB7: Bacterial type 33.3 4.8E+02 0.01 25.7 14.9 117 272-407 11-142 (158)
246 PF11802 CENP-K: Centromere-as 32.1 6.6E+02 0.014 26.9 12.4 48 271-322 18-70 (268)
247 PF10481 CENP-F_N: Cenp-F N-te 31.9 5E+02 0.011 28.3 10.8 53 331-383 83-135 (307)
248 cd00089 HR1 Protein kinase C-r 31.8 3E+02 0.0065 22.8 8.1 62 410-474 7-70 (72)
249 PF04859 DUF641: Plant protein 31.7 86 0.0019 29.9 4.8 32 334-365 99-130 (131)
250 KOG4673 Transcription factor T 31.4 1.1E+03 0.023 29.0 35.7 110 361-471 450-569 (961)
251 PRK10780 periplasmic chaperone 31.4 4.6E+02 0.01 24.9 10.4 53 520-572 84-137 (165)
252 TIGR02449 conserved hypothetic 31.4 2.2E+02 0.0047 24.5 6.7 46 278-330 9-54 (65)
253 PF09486 HrpB7: Bacterial type 31.4 5.2E+02 0.011 25.5 15.0 33 416-448 13-45 (158)
254 PRK15178 Vi polysaccharide exp 30.8 8.3E+02 0.018 27.6 12.8 81 423-508 254-338 (434)
255 TIGR03789 pdsO proteobacterial 30.7 82 0.0018 32.4 4.9 44 557-606 96-139 (239)
256 PF14662 CCDC155: Coiled-coil 30.7 6.1E+02 0.013 26.0 17.9 43 543-589 132-174 (193)
257 COG2433 Uncharacterized conser 30.7 8.4E+02 0.018 29.1 13.1 93 494-590 418-512 (652)
258 PF05384 DegS: Sensor protein 30.6 5.3E+02 0.012 25.3 13.5 46 544-589 108-153 (159)
259 PRK14472 F0F1 ATP synthase sub 30.0 4.9E+02 0.011 24.8 11.2 45 437-481 43-91 (175)
260 TIGR03545 conserved hypothetic 29.8 6.2E+02 0.013 29.2 11.9 35 447-482 172-206 (555)
261 PRK09174 F0F1 ATP synthase sub 29.6 5.9E+02 0.013 25.5 15.9 105 434-560 75-183 (204)
262 PRK11578 macrolide transporter 29.5 2.2E+02 0.0048 29.7 7.8 27 446-472 158-184 (370)
263 COG3524 KpsE Capsule polysacch 29.3 8.2E+02 0.018 27.2 12.0 136 444-579 177-326 (372)
264 PRK15422 septal ring assembly 29.3 3.9E+02 0.0084 24.1 8.1 52 422-473 8-59 (79)
265 PRK11677 hypothetical protein; 29.3 1.7E+02 0.0036 28.1 6.3 58 515-572 32-93 (134)
266 PF10168 Nup88: Nuclear pore c 29.1 7.9E+02 0.017 29.2 12.9 134 251-387 554-687 (717)
267 PF05384 DegS: Sensor protein 29.0 5.7E+02 0.012 25.1 13.3 127 260-402 4-149 (159)
268 PF03962 Mnd1: Mnd1 family; I 28.6 4.6E+02 0.01 25.9 9.4 24 276-299 69-92 (188)
269 PF10191 COG7: Golgi complex c 28.1 1.1E+03 0.023 28.1 17.4 85 453-538 70-163 (766)
270 TIGR02473 flagell_FliJ flagell 28.1 4.3E+02 0.0093 23.4 14.2 23 432-454 20-42 (141)
271 COG4985 ABC-type phosphate tra 28.0 3.4E+02 0.0075 28.9 8.8 70 490-572 170-245 (289)
272 TIGR02971 heterocyst_DevB ABC 27.9 6.6E+02 0.014 25.5 16.6 32 447-478 98-129 (327)
273 KOG0249 LAR-interacting protei 27.8 1.2E+03 0.026 28.6 20.5 128 332-473 94-257 (916)
274 PF14723 SSFA2_C: Sperm-specif 27.4 4.3E+02 0.0093 26.9 8.9 26 561-586 151-176 (179)
275 PF06295 DUF1043: Protein of u 26.9 2E+02 0.0043 26.7 6.3 42 516-557 29-73 (128)
276 PF11471 Sugarporin_N: Maltopo 26.5 79 0.0017 26.4 3.2 29 306-334 27-55 (60)
277 PF04582 Reo_sigmaC: Reovirus 26.4 1.1E+02 0.0025 33.1 5.2 55 499-554 99-153 (326)
278 TIGR01069 mutS2 MutS2 family p 26.3 6.8E+02 0.015 29.8 11.8 59 346-404 532-590 (771)
279 PRK10698 phage shock protein P 26.2 6.9E+02 0.015 25.2 17.0 25 458-482 57-81 (222)
280 PF09763 Sec3_C: Exocyst compl 26.1 4.7E+02 0.01 30.1 10.3 80 490-569 22-110 (701)
281 PRK10803 tol-pal system protei 26.0 2.5E+02 0.0054 28.8 7.4 58 474-531 43-101 (263)
282 PRK02793 phi X174 lysis protei 26.0 2.2E+02 0.0048 24.3 5.9 51 308-362 5-55 (72)
283 PF12329 TMF_DNA_bd: TATA elem 25.9 2.6E+02 0.0057 23.9 6.3 67 332-399 1-74 (74)
284 PF09789 DUF2353: Uncharacteri 25.2 8.4E+02 0.018 26.6 11.3 87 450-536 76-171 (319)
285 KOG4809 Rab6 GTPase-interactin 24.9 1.2E+03 0.027 27.7 27.5 51 521-572 516-570 (654)
286 PRK02119 hypothetical protein; 24.8 2.9E+02 0.0063 23.7 6.4 37 546-589 21-57 (73)
287 PRK00295 hypothetical protein; 24.7 2.4E+02 0.0051 23.9 5.8 51 308-362 2-52 (68)
288 PRK02119 hypothetical protein; 24.6 2.3E+02 0.0049 24.3 5.7 52 306-361 4-55 (73)
289 PRK00736 hypothetical protein; 24.3 2.2E+02 0.0047 24.1 5.5 50 308-361 2-51 (68)
290 KOG1086 Cytosolic sorting prot 24.0 3.2E+02 0.007 31.5 8.2 88 251-342 188-285 (594)
291 PTZ00491 major vault protein; 23.8 1.4E+03 0.03 28.2 13.7 15 169-183 360-374 (850)
292 TIGR02971 heterocyst_DevB ABC 23.5 7.9E+02 0.017 25.0 15.6 35 446-480 90-124 (327)
293 PF04394 DUF536: Protein of un 23.3 1.6E+02 0.0035 23.6 4.3 40 335-374 2-41 (45)
294 PF07716 bZIP_2: Basic region 23.3 3.4E+02 0.0075 21.4 6.2 38 437-474 16-53 (54)
295 PRK09859 multidrug efflux syst 23.2 3.3E+02 0.0072 28.7 7.9 75 450-538 96-170 (385)
296 PF03961 DUF342: Protein of un 23.1 5.8E+02 0.013 27.9 9.9 39 543-581 370-408 (451)
297 PF09304 Cortex-I_coil: Cortex 23.1 6.4E+02 0.014 23.8 12.7 66 306-382 11-76 (107)
298 PF00170 bZIP_1: bZIP transcri 22.9 4.1E+02 0.0089 21.4 7.7 36 442-477 22-57 (64)
299 PLN02939 transferase, transfer 22.8 1.6E+03 0.034 28.2 19.8 171 278-478 221-401 (977)
300 KOG4603 TBP-1 interacting prot 22.7 6E+02 0.013 26.1 9.0 110 233-371 31-144 (201)
301 PRK10929 putative mechanosensi 22.6 1.6E+03 0.035 28.3 33.5 46 429-476 200-245 (1109)
302 PRK02793 phi X174 lysis protei 22.5 3.3E+02 0.0072 23.3 6.3 37 546-582 6-42 (72)
303 PF04871 Uso1_p115_C: Uso1 / p 22.3 4.1E+02 0.0089 25.1 7.5 66 251-316 44-110 (136)
304 COG1566 EmrA Multidrug resista 22.3 1.1E+03 0.023 26.0 11.9 22 450-471 187-208 (352)
305 PRK05892 nucleoside diphosphat 22.2 3.2E+02 0.0068 26.4 6.9 22 537-558 50-71 (158)
306 COG3883 Uncharacterized protei 22.0 9.8E+02 0.021 25.5 21.5 49 434-482 61-113 (265)
307 KOG4637 Adaptor for phosphoino 22.0 1.2E+03 0.026 26.6 15.8 40 448-487 176-215 (464)
308 PF10234 Cluap1: Clusterin-ass 21.5 1E+03 0.022 25.4 13.5 73 494-566 172-250 (267)
309 PF07106 TBPIP: Tat binding pr 21.2 5.8E+02 0.012 24.1 8.3 85 278-365 81-167 (169)
310 PRK04406 hypothetical protein; 21.2 3.2E+02 0.007 23.6 6.0 55 306-364 6-60 (75)
311 PF09730 BicD: Microtubule-ass 21.1 1.5E+03 0.033 27.3 21.8 32 562-593 272-303 (717)
312 COG4026 Uncharacterized protei 20.9 1.5E+02 0.0033 31.3 4.7 43 278-320 165-207 (290)
313 PF04102 SlyX: SlyX; InterPro 20.9 4E+02 0.0087 22.3 6.4 22 546-567 16-37 (69)
314 KOG4643 Uncharacterized coiled 20.8 1.8E+03 0.039 28.2 35.9 42 544-585 484-525 (1195)
315 PRK04325 hypothetical protein; 20.7 3.2E+02 0.0069 23.5 5.9 52 306-361 4-55 (74)
316 PF11365 DUF3166: Protein of u 20.7 5.6E+02 0.012 23.6 7.7 70 304-374 22-93 (96)
317 PF11839 DUF3359: Protein of u 20.7 6E+02 0.013 23.5 7.9 53 430-482 40-92 (96)
318 PF12004 DUF3498: Domain of un 20.5 33 0.00072 38.7 0.0 90 256-352 381-474 (495)
319 PF06160 EzrA: Septation ring 20.5 1.3E+03 0.028 26.3 30.4 234 248-487 165-442 (560)
320 PRK07352 F0F1 ATP synthase sub 20.3 7.5E+02 0.016 23.5 11.2 45 437-481 44-92 (174)
321 PRK14474 F0F1 ATP synthase sub 20.3 9.5E+02 0.02 24.7 11.7 25 464-488 61-85 (250)
322 KOG1962 B-cell receptor-associ 20.2 6.6E+02 0.014 26.1 8.9 44 343-386 165-208 (216)
323 TIGR02449 conserved hypothetic 20.1 2.9E+02 0.0062 23.8 5.4 49 270-318 8-63 (65)
No 1
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=99.95 E-value=6.1e-26 Score=239.96 Aligned_cols=255 Identities=26% Similarity=0.330 Sum_probs=204.9
Q ss_pred hhHHHHHhcccc-----hhHHHHHHHHHHHHHHHhhHhHHHHHhhhhhhhhhhhhhh---hhHHHHHHHHHHHHHHHHHH
Q 007324 332 SNLAEALAAKNS-----EIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELT---ETRMIQALREELASVERRAE 403 (608)
Q Consensus 332 sdlteALAAKdS-----qLavL~vrldeadq~l~~~e~~La~LQ~e~~RImqdh~~~---e~q~lqaLREeLa~AE~rL~ 403 (608)
+++++++.++++ ++++|+++|+++++.+..+...|..++.++.+++.++..+ ..+.+.+|+++|..++.+++
T Consensus 93 ~~~~~~~~~~~~~sl~~e~a~lk~~l~e~~~El~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~sL~ekl~lld~al~ 172 (511)
T PF09787_consen 93 DDLTEASSAKSSDSLSSELAVLKIRLQELDQELRRLRRQLEELQNEKSRILSDESTVSRLQNGAPRSLQEKLSLLDEALK 172 (511)
T ss_pred ccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 566777778877 9999999999999999999999999999999999999987 47788999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---
Q 007324 404 EERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQ--- 480 (608)
Q Consensus 404 ~Eq~ah~Atr~aamERE~elE~qlAeastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka~Ril--- 480 (608)
.+.+....+.+.++.|-.++|--.......+. +.+.|.+..++..++++++.+++..+.+.++||.+||+||.+|+
T Consensus 173 ~~~~~~~~~~~~fl~rtl~~e~~~~~L~~~~~-A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~k 251 (511)
T PF09787_consen 173 REDGNAITAVVEFLKRTLKKEIERQELEERPK-ALRHYIEYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSK 251 (511)
T ss_pred hcCccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCH
Confidence 99999877777777777776655555555555 56789999999999999999999999999999999999999999
Q ss_pred --------CCCchh-HHH---HH-------HHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHH------------------
Q 007324 481 --------KKSPEE-ANQ---AI-------QMQAWQDEVERARQGQRDAENKLSSLEAEVQK------------------ 523 (608)
Q Consensus 481 --------~gs~e~-Agq---v~-------qle~~reev~~areq~~~~e~a~qe~~ae~q~------------------ 523 (608)
+|++.+ .+. .+ +...+++++..++.|+......++.++.++..
T Consensus 252 EklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~ 331 (511)
T PF09787_consen 252 EKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEP 331 (511)
T ss_pred HHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 212221 110 02 22556666666666663333333332222111
Q ss_pred ---HHHHHHHHHHHHhhh---------------------------------hhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007324 524 ---MRVEMAAMKRDAEHY---------------------------------SREEHMELEKRYRELTDLLYYKQTQLETM 567 (608)
Q Consensus 524 ---~e~El~~~Kqd~~~~---------------------------------Sr~s~~ELE~RlreLTE~LyqKQTqLEaL 567 (608)
-++|++.+.+++.|| +.++..|||+||+.|||+||+|||+||.|
T Consensus 332 ~~~~e~e~~l~~~el~~~~ee~~~~~s~~~~k~~~ke~E~q~lr~~l~~~~~~s~~~elE~rl~~lt~~Li~KQ~~lE~l 411 (511)
T PF09787_consen 332 ELTTEAELRLYYQELYHYREELSRQKSPLQLKLKEKESEIQKLRNQLSARASSSSWNELESRLTQLTESLIQKQTQLESL 411 (511)
T ss_pred HhchHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhccCCcHhHHHHHhhccHHHHHHHHHHHHH
Confidence 167788888888877 13367899999999999999999999999
Q ss_pred hhHHHHHHHHhHHHHHHHhh
Q 007324 568 ASEKAAAEFQLEKEMNRLQE 587 (608)
Q Consensus 568 atEKaAl~fQLER~eqq~k~ 587 (608)
++|||+|.|||||++.+|++
T Consensus 412 ~~ek~al~lqlErl~~~l~~ 431 (511)
T PF09787_consen 412 GSEKNALRLQLERLETQLKE 431 (511)
T ss_pred HhhhhhccccHHHHHHHHHh
Confidence 99999999999999999995
No 2
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=99.93 E-value=1.8e-24 Score=227.14 Aligned_cols=247 Identities=14% Similarity=0.085 Sum_probs=209.7
Q ss_pred HhHHHHHHHHHHHHHHhhhhhhhhhh--h---------hhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHhhhh
Q 007324 305 LSRSYEARIKQLEQELSVYKSEVTKV--E---------SNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNM 373 (608)
Q Consensus 305 ~~~S~~~r~k~lQ~ELs~ar~~v~k~--E---------sdlteALAAKdSqLavL~vrldeadq~l~~~e~~La~LQ~e~ 373 (608)
-|++.+.+-+..+.+++.++..+.+| | +|++++.++||||+ ++||+++++++..+.++|+.+
T Consensus 133 ~~~~~~r~~se~~~~d~~~~~~~~~~a~d~~~s~~~q~~d~~e~~~~kdSQl---kvrlqe~~~ll~~Rve~le~~---- 205 (554)
T KOG4677|consen 133 FFRGRTRPGSEQSLSDALSDTPAKSYAPDLGRSKGEQYRDYSEDWSPKDSQL---KVRLQEVRRLLKGRVESLERF---- 205 (554)
T ss_pred hhhhhcccchhhhccccccccchhhcccccccchhhhHhhHhhhcccchhhH---HHHHHHHHHHHHhhhHHHHHH----
Confidence 46778888999999999999999999 3 89999999999998 999999999999999999988
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhh
Q 007324 374 ESIMRNRELTETRMIQALREELASVERRAEEERAAH------NATKMAAMEREVELEHR-AAEASMALARIQRIADERTA 446 (608)
Q Consensus 374 ~RImqdh~~~e~q~lqaLREeLa~AE~rL~~Eq~ah------~Atr~aamERE~elE~q-lAeastAL~~~QR~~~E~k~ 446 (608)
-++++|+++|+.|+.++.+++++. |+.|+..+| +|.| ++|..+. +.|.+.+.|+
T Consensus 206 ------------Sal~~lq~~L~la~~~~~~~~e~~i~~~~~f~~r~~~~E----~e~rn~~E~~~l---A~r~l~~~kK 266 (554)
T KOG4677|consen 206 ------------SALRSLQDKLQLAEEAVSMHDENVITAVLIFLKRTLSKE----IEFRNELEVRQL---ALRHLIHFKK 266 (554)
T ss_pred ------------HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHH----HHHHHHHHHHHH---HHHHHHHHHH
Confidence 189999999999999999999984 888888888 8888 7777666 9999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCc------------------------hhHHHHHHH---------
Q 007324 447 KAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSP------------------------EEANQAIQM--------- 493 (608)
Q Consensus 447 ra~eLeqqv~~lea~~esl~QELqDyk~ka~Ril~gs~------------------------e~Agqv~ql--------- 493 (608)
+++|+.+++...+ +.+.++||.+|..++++|+-.+. .-.+|+++|
T Consensus 267 e~de~k~~~~l~~--~l~~keeL~~s~~~e~~i~qs~~kstas~~E~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d~EA 344 (554)
T KOG4677|consen 267 EIDEQKLLLDLFR--FLDRKEELALSHYREHLIIQSPDKSTASRKEFEETRVELPFSAEDSAHIQDQYTLLRSQIIDIEA 344 (554)
T ss_pred HHHHHHHHHHHHH--HhhhHHHHHHHHHHHhhccCCCCcchhHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988 89999999999999999992211 111566544
Q ss_pred ------HHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh------------h----------------
Q 007324 494 ------QAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHY------------S---------------- 539 (608)
Q Consensus 494 ------e~~reev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd~~~~------------S---------------- 539 (608)
++.++|+.+.+.+++...+-+..+ +.+++..++++++. |
T Consensus 345 q~r~l~s~~~~q~~~~h~~ka~~~~~~~~l-------~~~~ec~~~e~e~~~~~~~r~~~~~qski~dk~~el~kl~~~l 417 (554)
T KOG4677|consen 345 QDRHLESAGQTQIFRKHPRKASILNMPLVL-------TLFYECFYHETEAEGTFSSRVNLKKQSKIPDKQYELTKLAARL 417 (554)
T ss_pred HHHhHHHHhHHHHHHhhhHhhhhhhchHHH-------HHHHHHHHHHHHHhhhhhhhccchhhccCcchHHHHHHHHHHH
Confidence 345666666666666666666665 77777777777622 0
Q ss_pred -----hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHh
Q 007324 540 -----REEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQ 586 (608)
Q Consensus 540 -----r~s~~ELE~RlreLTE~LyqKQTqLEaLatEKaAl~fQLER~eqq~k 586 (608)
+-++.+|++++|+||++|+|||||||++.++++.|+|+|||+.+++.
T Consensus 418 ~~r~~~~s~~~l~~~~~qLt~tl~qkq~~le~v~~~~~~ln~~lerLq~~~N 469 (554)
T KOG4677|consen 418 KLRAWNDSVDALFTTKNQLTYTLKQKQIGLERVVEILHKLNAPLERLQEYVN 469 (554)
T ss_pred HHHhhhhhHHHHhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhc
Confidence 11689999999999999999999999999999999999999999998
No 3
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.55 E-value=0.003 Score=71.36 Aligned_cols=22 Identities=18% Similarity=0.289 Sum_probs=9.3
Q ss_pred HHHHHHhhhhhhhhhhhhhhhH
Q 007324 272 ARLARVCAGLSSRLQEYKSENA 293 (608)
Q Consensus 272 ~rL~rvc~~ls~rL~~lr~EN~ 293 (608)
.+|-..+..|..++..++....
T Consensus 187 ~el~~~~~~L~~q~~~l~~~~e 208 (1164)
T TIGR02169 187 ERLDLIIDEKRQQLERLRRERE 208 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443333
No 4
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.41 E-value=0.0037 Score=70.20 Aligned_cols=13 Identities=31% Similarity=0.595 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHh
Q 007324 309 YEARIKQLEQELS 321 (608)
Q Consensus 309 ~~~r~k~lQ~ELs 321 (608)
+...+..++.++.
T Consensus 703 ~~~~l~~l~~~~~ 715 (1179)
T TIGR02168 703 LRKELEELEEELE 715 (1179)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 5
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.39 E-value=0.0048 Score=76.29 Aligned_cols=336 Identities=19% Similarity=0.243 Sum_probs=195.9
Q ss_pred chhhhHHHHhhHHHhhhhcchhhHHHHHHHhhhhhhhhhhhhhhhHhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhh
Q 007324 248 KEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEV 327 (608)
Q Consensus 248 K~qdql~ea~~ll~~~~~~g~ske~rL~rvc~~ls~rL~~lr~EN~QLEeLLr~E~~~~~S~~~r~k~lQ~ELs~ar~~v 327 (608)
|.+.-|+-.-..++..+..=+.+-..|.+-+.-.+.+|+.+..++..+..++..=-..+..+..++++|.++|..-|..+
T Consensus 1041 k~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r 1120 (1930)
T KOG0161|consen 1041 KAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASR 1120 (1930)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334443334445555555566677888888888888888888887776666655668999999999999999999999
Q ss_pred hhhh---hhHHHHHhcccchhHHHHHHHHHHHHHHHhhHh---HHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 007324 328 TKVE---SNLAEALAAKNSEIETLVSSIDALKKQAALSEG---NLASLQMNMESIMRNRELTETRMIQALREELASVERR 401 (608)
Q Consensus 328 ~k~E---sdlteALAAKdSqLavL~vrldeadq~l~~~e~---~La~LQ~e~~RImqdh~~~e~q~lqaLREeLa~AE~r 401 (608)
++.| +||.. +++.|+.+|++......+... +.+.-=..+.+.|+.-...+...+..||-+....=..
T Consensus 1121 ~K~ek~r~dL~~-------ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~e 1193 (1930)
T KOG0161|consen 1121 AKAERQRRDLSE-------ELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAE 1193 (1930)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 9987 55554 456677777776333222222 1222222344445544555666777777665554443
Q ss_pred HHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 007324 402 AEEERAA--HNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRG 479 (608)
Q Consensus 402 L~~Eq~a--h~Atr~aamERE~elE~qlAeastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka~Ri 479 (608)
+..=-+. ..=..+.+-. ..|+....+...-+..+.+.-.+..+++.-++-++..+...|..+..-+.|+-.+-++.
T Consensus 1194 l~~qle~l~~~k~~lekek--~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l 1271 (1930)
T KOG0161|consen 1194 LQEQLEQLQKDKAKLEKEK--SDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRL 1271 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3221111 1122222222 23445555555555555555566666666666666666666666666555544444444
Q ss_pred cCCCchhHHHHH---------------------------------------HHHHHHHHHHHHHHhHHHHHHhHHHHHHH
Q 007324 480 QKKSPEEANQAI---------------------------------------QMQAWQDEVERARQGQRDAENKLSSLEAE 520 (608)
Q Consensus 480 l~gs~e~Agqv~---------------------------------------qle~~reev~~areq~~~~e~a~qe~~ae 520 (608)
....+...++.. ++..++.+++.+++++.+....+..+..+
T Consensus 1272 ~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~ 1351 (1930)
T KOG0161|consen 1272 QNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAKNELERK 1351 (1930)
T ss_pred hhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 422221111111 22334555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHhhhhhhh
Q 007324 521 VQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQVCQ 592 (608)
Q Consensus 521 ~q~~e~El~~~Kqd~~~~Sr~s~~ELE~RlreLTE~LyqKQTqLEaLatEKaAl~fQLER~eqq~k~~q~~~ 592 (608)
+-+..+++..-+.-++-.-.+...+||..-+.+++-|-.-|-++|.+..--++|.-..=++.+-+..++.+.
T Consensus 1352 lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~ 1423 (1930)
T KOG0161|consen 1352 LSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDL 1423 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 555555555555555432333467888888888888888888888887777766555555555555555544
No 6
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.25 E-value=0.017 Score=65.05 Aligned_cols=14 Identities=29% Similarity=0.593 Sum_probs=6.7
Q ss_pred CCcchhhhHHHHhh
Q 007324 245 PPTKEQDQLDEAQG 258 (608)
Q Consensus 245 sp~K~qdql~ea~~ 258 (608)
+|...-.-++++-|
T Consensus 153 ~~~~~~~~~~~~~~ 166 (1179)
T TIGR02168 153 KPEERRAIFEEAAG 166 (1179)
T ss_pred CHHHHHHHHHHHcc
Confidence 34444444555544
No 7
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.24 E-value=0.017 Score=64.43 Aligned_cols=90 Identities=27% Similarity=0.320 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH---HHHHHHHHHHHhhh
Q 007324 493 MQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTD---LLYYKQTQLETMAS 569 (608)
Q Consensus 493 le~~reev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd~~~~Sr~s~~ELE~RlreLTE---~LyqKQTqLEaLat 569 (608)
.+.-+.+|+.|...+..++..+++.+.++|++++++.+.+ |.. ...|=-.-|+|+| .|--=|--=|.|..
T Consensus 366 ~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~-D~n------~vqlsE~~rel~Elks~lrv~qkEKEql~~ 438 (546)
T PF07888_consen 366 AEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEK-DCN------RVQLSENRRELQELKSSLRVAQKEKEQLQE 438 (546)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666788888888888889999999999999999997544 322 2222223344444 22222223345777
Q ss_pred HHHHHHHHhHHHHHHHhhhh
Q 007324 570 EKAAAEFQLEKEMNRLQEVQ 589 (608)
Q Consensus 570 EKaAl~fQLER~eqq~k~~q 589 (608)
||--|--=.+|++++|-.+-
T Consensus 439 EkQeL~~yi~~Le~r~~~~~ 458 (546)
T PF07888_consen 439 EKQELLEYIERLEQRLDKVA 458 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 88777777888888876653
No 8
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.23 E-value=0.0063 Score=67.64 Aligned_cols=58 Identities=22% Similarity=0.268 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007324 410 NATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEA 474 (608)
Q Consensus 410 ~Atr~aamERE~elE~qlAeastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ 474 (608)
+.+|+.+.. |-.++++++..|.........++. .|++.+...+..+..|+.||+.++.
T Consensus 328 h~aRLe~aq----l~~qLad~~l~lke~~~q~~qEk~---~l~~~~e~~k~~ie~L~~el~~~e~ 385 (546)
T PF07888_consen 328 HQARLEAAQ----LKLQLADASLELKEGRSQWAQEKQ---ALQHSAEADKDEIEKLSRELQMLEE 385 (546)
T ss_pred HHhhhhHHH----HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 677777776 778899999988777666666655 5666667777777788877766543
No 9
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.23 E-value=0.019 Score=71.32 Aligned_cols=320 Identities=20% Similarity=0.250 Sum_probs=180.0
Q ss_pred cchhhHHHHHHHhhhhhhhhhhhhhhhHhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhh---hhHHHHHhccc
Q 007324 266 TGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVE---SNLAEALAAKN 342 (608)
Q Consensus 266 ~g~ske~rL~rvc~~ls~rL~~lr~EN~QLEeLLr~E~~~~~S~~~r~k~lQ~ELs~ar~~v~k~E---sdlteALAAKd 342 (608)
.....--.|-++=..+-+.-+.+..|+.+|..-+.+.......++-..+.+...|+.++......+ ++++.-.+...
T Consensus 1193 el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~ 1272 (1930)
T KOG0161|consen 1193 ELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQ 1272 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444445555556666667777777777766666555544444444444555555555555553 56777788888
Q ss_pred chhHHHHHHHHHHHHHHHhhHhHHHHHhhhhhhhhhhhhhh------hhHHHHHHHHHHHHHHHHHHHHHHHh-------
Q 007324 343 SEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELT------ETRMIQALREELASVERRAEEERAAH------- 409 (608)
Q Consensus 343 SqLavL~vrldeadq~l~~~e~~La~LQ~e~~RImqdh~~~------e~q~lqaLREeLa~AE~rL~~Eq~ah------- 409 (608)
+++..|..++.++...+......+..+...++.+-+.-... -...+.-|+.++..--..+++|++..
T Consensus 1273 ~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~l 1352 (1930)
T KOG0161|consen 1273 NENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAKNELERKL 1352 (1930)
T ss_pred hhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888877766666666655555542221111 12344445555555555666666653
Q ss_pred --HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---
Q 007324 410 --NATKMAAMEREVELEHR--AAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKK--- 482 (608)
Q Consensus 410 --~Atr~aamERE~elE~q--lAeastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka~Ril~g--- 482 (608)
..+.+...-+..+-+.. +.+.=.+=..++..+.+.......+.+.+..++-.-..|+||+-|.-....+....
T Consensus 1353 sk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~ 1432 (1930)
T KOG0161|consen 1353 SKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAA 1432 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 22333333322222222 23333333334444555555555666666666666666688888866666554311
Q ss_pred ---CchhHHHHH-----HHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q 007324 483 ---SPEEANQAI-----QMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELT 554 (608)
Q Consensus 483 ---s~e~Agqv~-----qle~~reev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd~~~~Sr~s~~ELE~RlreLT 554 (608)
---....++ .++-+..+++.++..-+..+..+..+...+..+-..++.++++-.+++.. -.+|+.++-+++
T Consensus 1433 le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~e-i~dl~~~~~e~~ 1511 (1930)
T KOG0161|consen 1433 LEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQE-IEDLEEQKDEGG 1511 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 001111111 11223344444444444444444444444444444445555554454433 678888888888
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHh
Q 007324 555 DLLYYKQTQLETMASEKAAAEFQLEKEMNRLQ 586 (608)
Q Consensus 555 E~LyqKQTqLEaLatEKaAl~fQLER~eqq~k 586 (608)
-.+...+..+.+|-.||.-|+-+|+-++-.+.
T Consensus 1512 k~v~elek~~r~le~e~~elQ~aLeElE~~le 1543 (1930)
T KOG0161|consen 1512 KRVHELEKEKRRLEQEKEELQAALEELEAALE 1543 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88888899999999999999999988876543
No 10
>PRK02224 chromosome segregation protein; Provisional
Probab=98.05 E-value=0.043 Score=62.00 Aligned_cols=51 Identities=14% Similarity=0.171 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007324 427 AAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLK 477 (608)
Q Consensus 427 lAeastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka~ 477 (608)
+.+.-.-+..+++.+++...+..+.+.++..++.+++.++.++.+|+.++.
T Consensus 511 l~~l~~~~~~l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~ 561 (880)
T PRK02224 511 IERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAA 561 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444455555555555555555666665554333
No 11
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.00 E-value=0.057 Score=64.61 Aligned_cols=136 Identities=12% Similarity=0.151 Sum_probs=63.4
Q ss_pred HHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHhhhhhhhhhhhhhhhhHHHHHHH
Q 007324 313 IKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALR 392 (608)
Q Consensus 313 ~k~lQ~ELs~ar~~v~k~EsdlteALAAKdSqLavL~vrldeadq~l~~~e~~La~LQ~e~~RImqdh~~~e~q~lqaLR 392 (608)
+..+..++..++.++...+..+...-+ +..+..|...++.....+......+..++.+...+.. -+..|+
T Consensus 794 i~r~~~ei~~l~~qie~l~~~l~~~~~--~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~--------eI~~Lq 863 (1311)
T TIGR00606 794 MERFQMELKDVERKIAQQAAKLQGSDL--DRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQE--------QIQHLK 863 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHH
Confidence 456677777777777766655554333 2244445555555555555544444444444444432 233333
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 007324 393 EELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQ 466 (608)
Q Consensus 393 EeLa~AE~rL~~Eq~ah~Atr~aamERE~elE~qlAeastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~ 466 (608)
.++.. +..++.. ....+.+-..||.++.+..+-+..+.....+-+..+..|...+..+....+.++
T Consensus 864 ~ki~e----l~~~klk----l~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 929 (1311)
T TIGR00606 864 SKTNE----LKSEKLQ----IGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELI 929 (1311)
T ss_pred HHHHH----HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 33222 1111111 011333444455555555555555555444444455555444444444443333
No 12
>PRK02224 chromosome segregation protein; Provisional
Probab=97.98 E-value=0.057 Score=61.02 Aligned_cols=47 Identities=15% Similarity=0.175 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHhhhhh
Q 007324 544 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQV 590 (608)
Q Consensus 544 ~ELE~RlreLTE~LyqKQTqLEaLatEKaAl~fQLER~eqq~k~~q~ 590 (608)
.+|+.+|.++.+.+=.+-++++........+.-+++.+...+.....
T Consensus 512 ~~l~~~~~~l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~ 558 (880)
T PRK02224 512 ERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKRE 558 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777766566666776666666676666666666544433
No 13
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.76 E-value=0.19 Score=60.02 Aligned_cols=77 Identities=14% Similarity=0.214 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHhhhhhhhhhhhhh
Q 007324 306 SRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL 382 (608)
Q Consensus 306 ~~S~~~r~k~lQ~ELs~ar~~v~k~EsdlteALAAKdSqLavL~vrldeadq~l~~~e~~La~LQ~e~~RImqdh~~ 382 (608)
+..+.+.++.+..+|..+..+...+|+.=.+.+.+.-.++..++.+++..+..+...+++...++..-..+.+.-..
T Consensus 315 ~~~~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~~ 391 (1201)
T PF12128_consen 315 LSALNADLARIKSELDEIEQQKKDYEDADIEQLIARVDQLPEWRNELENLQEQLDLLTSKHQDIESKYNKLKQKLEE 391 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666666666655556665433555666667777777777777777777777666666655555444333
No 14
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.60 E-value=0.31 Score=58.03 Aligned_cols=136 Identities=22% Similarity=0.288 Sum_probs=69.8
Q ss_pred hhhhhhhhHHHhhhhcCCCCcchhhhHHHHhhHHHhhhhcc--hhhHHHHHHHhhhhhhhhhhhhhhhHhHHHHHHHHHH
Q 007324 227 KVETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTG--QSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERE 304 (608)
Q Consensus 227 kve~~~n~k~qq~~KaD~sp~K~qdql~ea~~ll~~~~~~g--~ske~rL~rvc~~ls~rL~~lr~EN~QLEeLLr~E~~ 304 (608)
+|+-++|.+-.. ..-=++||-|.++--.... ..+..+...-|+.+...+.+++.... =|..++.
T Consensus 145 ~V~~i~~~kp~e----------rr~iiEEaaGv~~y~~r~~ea~~~L~~~~~nl~~~~~~~~el~~~l~----~L~~q~~ 210 (1163)
T COG1196 145 KVEEIINAKPEE----------RRKLIEEAAGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLE----KLERQAE 210 (1163)
T ss_pred cHHHHHcCCHHH----------HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 566666654433 3336788888776433222 12222223334444444444444333 2222222
Q ss_pred H---hHHHHHHHHHHHHHHhhhhhhhhhh-hhhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHhhhhhhh
Q 007324 305 L---SRSYEARIKQLEQELSVYKSEVTKV-ESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESI 376 (608)
Q Consensus 305 ~---~~S~~~r~k~lQ~ELs~ar~~v~k~-EsdlteALAAKdSqLavL~vrldeadq~l~~~e~~La~LQ~e~~RI 376 (608)
. ...+...+..++..+-..+..-.+- -..+.+++.....++..+...+++....+...+..+.++......+
T Consensus 211 ~a~~y~~l~~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~ 286 (1163)
T COG1196 211 KAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEEL 286 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 4444444444444442221111111 1556667777777777777777777777777777777776665555
No 15
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.59 E-value=0.27 Score=58.70 Aligned_cols=79 Identities=28% Similarity=0.346 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHhhhH
Q 007324 492 QMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLY-YKQTQLETMASE 570 (608)
Q Consensus 492 qle~~reev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd~~~~Sr~s~~ELE~RlreLTE~Ly-qKQTqLEaLatE 570 (608)
+++.....++.+++.+..+..+...++.+.+.++.+-......++.. +..-.+|+.++.+|-.+|+ .|=|.++=|..+
T Consensus 470 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~-~~~~~~~~~~~~~l~~~L~p~~gSL~~fL~~~ 548 (1201)
T PF12128_consen 470 QLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQA-RRELEELRAQIAELQRQLDPQKGSLLEFLRKN 548 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhC
Confidence 44444444555555444444444444444333333322222222221 2223467888888888887 566777777555
Q ss_pred H
Q 007324 571 K 571 (608)
Q Consensus 571 K 571 (608)
+
T Consensus 549 ~ 549 (1201)
T PF12128_consen 549 K 549 (1201)
T ss_pred C
Confidence 4
No 16
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.57 E-value=0.095 Score=51.76 Aligned_cols=134 Identities=22% Similarity=0.318 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--Cc-hhHHHHH-HHHHHH
Q 007324 422 ELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKK--SP-EEANQAI-QMQAWQ 497 (608)
Q Consensus 422 elE~qlAeastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka~Ril~g--s~-e~Agqv~-qle~~r 497 (608)
.||.++.++...+..+.++|++-.+|+.-++..+.-++..++.+-..+.+++......-.. +. ..-++.. ......
T Consensus 96 ~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e 175 (237)
T PF00261_consen 96 ELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYE 175 (237)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Confidence 4778888888888888899998888888888888888888888777777777766554211 00 0011111 124455
Q ss_pred HHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh---hhhhHHHHHHHHHHHHH
Q 007324 498 DEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHY---SREEHMELEKRYRELTD 555 (608)
Q Consensus 498 eev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd~~~~---Sr~s~~ELE~RlreLTE 555 (608)
..+..+.+++..++.-...++..+..++.++..+..++..+ ...-..+|+.=|.+|++
T Consensus 176 ~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~el~~ 236 (237)
T PF00261_consen 176 EKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLNELNE 236 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 56666666666666666666666666666666666666633 12234566666666554
No 17
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.44 E-value=0.49 Score=56.38 Aligned_cols=28 Identities=18% Similarity=0.092 Sum_probs=17.0
Q ss_pred HHHHHHhhhHHHHHHHHhHHHHHHHhhh
Q 007324 561 QTQLETMASEKAAAEFQLEKEMNRLQEV 588 (608)
Q Consensus 561 QTqLEaLatEKaAl~fQLER~eqq~k~~ 588 (608)
.++++.|-..|..+.-.++.+-+..++.
T Consensus 983 ~~~~~dl~~a~~~l~~~i~~~d~~~~~~ 1010 (1163)
T COG1196 983 KSQREDLEEAKEKLLEVIEELDKEKRER 1010 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777766666555554443
No 18
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.39 E-value=0.18 Score=50.39 Aligned_cols=86 Identities=17% Similarity=0.349 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 007324 385 TRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECAT 464 (608)
Q Consensus 385 ~q~lqaLREeLa~AE~rL~~Eq~ah~Atr~aamERE~elE~qlAeastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~es 464 (608)
+.+|.-+|.+....=..-+.+-++.|..++..+. .+......++..+..-+.+-+..+..|+-++..++...++
T Consensus 168 ~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~------~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~ 241 (312)
T PF00038_consen 168 SAALREIRAQYEEIAQKNREELEEWYQSKLEELR------QQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNAS 241 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHhhhhhhhhhhccccccccc------ccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhh
Confidence 4455555555544444555555566777666655 2333344555556666666666666777777777777777
Q ss_pred HHHHHHHHHHHH
Q 007324 465 LQQELQDMEARL 476 (608)
Q Consensus 465 l~QELqDyk~ka 476 (608)
|...+.+++..-
T Consensus 242 Le~~l~~le~~~ 253 (312)
T PF00038_consen 242 LERQLRELEQRL 253 (312)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhhhHHHHHHHH
Confidence 766666665543
No 19
>PRK09039 hypothetical protein; Validated
Probab=97.33 E-value=0.018 Score=60.16 Aligned_cols=61 Identities=26% Similarity=0.364 Sum_probs=54.4
Q ss_pred HHHHHhhhhhhhhhhhhhhhHhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 007324 273 RLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESN 333 (608)
Q Consensus 273 rL~rvc~~ls~rL~~lr~EN~QLEeLLr~E~~~~~S~~~r~k~lQ~ELs~ar~~v~k~Esd 333 (608)
=|...+.|+.++|..+..+..+|=++|.-|......+..++.+++..|+.++.+.++.+..
T Consensus 43 fLs~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~ 103 (343)
T PRK09039 43 FLSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQAL 103 (343)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778889999999999999999999999999999999999999999999887777766553
No 20
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.31 E-value=0.72 Score=55.60 Aligned_cols=54 Identities=7% Similarity=-0.013 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 007324 427 AAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQ 480 (608)
Q Consensus 427 lAeastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka~Ril 480 (608)
+.+...-...++..+++-+..+..+...++-++..++.+.+++..+...-.++.
T Consensus 876 l~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 929 (1311)
T TIGR00606 876 IGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELI 929 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 555555556666777777777777766666666666666666666555544433
No 21
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.27 E-value=0.92 Score=56.08 Aligned_cols=48 Identities=17% Similarity=0.074 Sum_probs=27.1
Q ss_pred hhhhhhhhhhhhhhHhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhh
Q 007324 279 AGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSE 326 (608)
Q Consensus 279 ~~ls~rL~~lr~EN~QLEeLLr~E~~~~~S~~~r~k~lQ~ELs~ar~~ 326 (608)
.|.+.++.+.+.....-+.-|..=...+..+..+++.|+.++..++.-
T Consensus 289 ag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~ky 336 (1486)
T PRK04863 289 LELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDH 336 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555444444433344566666777777777666443
No 22
>PRK09039 hypothetical protein; Validated
Probab=96.94 E-value=0.1 Score=54.60 Aligned_cols=56 Identities=27% Similarity=0.299 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007324 421 VELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARL 476 (608)
Q Consensus 421 ~elE~qlAeastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka 476 (608)
.+++.+++.....|+...-.+.+..+.+.-|.+++..++.+++++..+|.+.+.+-
T Consensus 112 ~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~ 167 (343)
T PRK09039 112 AAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRD 167 (343)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777766777777777777777777777777777777777777776666543
No 23
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=96.87 E-value=2.3 Score=53.57 Aligned_cols=279 Identities=19% Similarity=0.274 Sum_probs=178.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhh----------hhHHHHHhcccchhHHHHHH----HHHHHHHHHhhHhHHHHHhhh
Q 007324 307 RSYEARIKQLEQELSVYKSEVTKVE----------SNLAEALAAKNSEIETLVSS----IDALKKQAALSEGNLASLQMN 372 (608)
Q Consensus 307 ~S~~~r~k~lQ~ELs~ar~~v~k~E----------sdlteALAAKdSqLavL~vr----ldeadq~l~~~e~~La~LQ~e 372 (608)
..++.|..+++-+....+..-.+.+ ..|..-|..++-.|..+.+. +....-.|.-....+.++|..
T Consensus 160 ~e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~~~~ekll~~~re~s~~~~~L~~~L~~~~~~~~~~q~~ 239 (1822)
T KOG4674|consen 160 SELEARLQETQSEDVSSQLKEERLEQEKSLLESENKWLSRELSKVNEKLLSLRREHSIEVEQLEEKLSDLKESLAELQEK 239 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444442 56778889999999999999 888999999999999999999
Q ss_pred hhhhhhhhhhhh------hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007324 373 MESIMRNRELTE------TRMIQALREELASVERRAEEERAAHNATKMAAM--EREVELEHRAAEASMALARIQRIADER 444 (608)
Q Consensus 373 ~~RImqdh~~~e------~q~lqaLREeLa~AE~rL~~Eq~ah~Atr~aam--ERE~elE~qlAeastAL~~~QR~~~E~ 444 (608)
+..+.+....-+ ..-|-.|++-..+-+..+..|-..| .||... .--.+++++.++...++..+++.+++.
T Consensus 240 ~~~l~q~~~eLs~~ie~~~~~ls~~k~t~~s~~~kf~~El~~q--~kL~eL~ks~~ee~~~~~~el~~~i~~~~klled~ 317 (1822)
T KOG4674|consen 240 NKSLKQQNEELSKKIESLNLELSKLKDTAESSEEKFEKELSTQ--KKLNELWKSKLEELSHEVAELQRAIEELEKLLEDA 317 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888776664 2334445555555555555555554 222222 223368889999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------------CC--Cc-h--hH---------HHHHHH----H
Q 007324 445 TAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQ------------KK--SP-E--EA---------NQAIQM----Q 494 (608)
Q Consensus 445 k~ra~eLeqqv~~lea~~esl~QELqDyk~ka~Ril------------~g--s~-e--~A---------gqv~ql----e 494 (608)
..++.+++.+++.++..+..+.. +|+.+.+|-. .| ++ + +| .+++.+ .
T Consensus 318 ~~~~~e~~d~l~e~~~sl~~~~~---~~~k~~~~le~~l~~an~~~~~~~~~~~~s~~~a~~s~~~~~~~sLtk~ys~~~ 394 (1822)
T KOG4674|consen 318 SERNKENTDQLKELEQSLSKLNE---KLEKKVSRLEGELEDANDSLSATGESSMVSEKAALASSLIRPGSSLTKLYSKYS 394 (1822)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhhhHHhhcccchhhhHHHHHHhhcccchhHHHHHHHHH
Confidence 99999999999988876555544 3444444433 01 11 1 11 111111 3
Q ss_pred HHHHHHHHHHHhHHHHHHhHHHH-------HHHHHHHHHHHHHHHHHHhh------hhhhhHHHHHHHHHHHHHHHHHHH
Q 007324 495 AWQDEVERARQGQRDAENKLSSL-------EAEVQKMRVEMAAMKRDAEH------YSREEHMELEKRYRELTDLLYYKQ 561 (608)
Q Consensus 495 ~~reev~~areq~~~~e~a~qe~-------~ae~q~~e~El~~~Kqd~~~------~Sr~s~~ELE~RlreLTE~LyqKQ 561 (608)
.++.++..+...+......+++. .-.+...+-++++|...... ++++....+|+.|+.|.-.|-...
T Consensus 395 ~~qqqle~~~lele~~~~~l~s~~eev~~~~p~lk~qr~~~e~~~~~~~~l~~el~~~~q~~~~~e~~~~~l~~~~~~~~ 474 (1822)
T KOG4674|consen 395 KLQQQLESLKLELERLQNILSSFKEEVKQKAPILKEQRSELERMQETKAELSEELDFSNQKIQKLEKELESLKKQLNDLE 474 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555444444443 34444555555555544442 267788999999999999888888
Q ss_pred HHHHHhhhHHHHHHHHhHHHHHHHhhhhh
Q 007324 562 TQLETMASEKAAAEFQLEKEMNRLQEVQV 590 (608)
Q Consensus 562 TqLEaLatEKaAl~fQLER~eqq~k~~q~ 590 (608)
+++-.|-..=-.+.-|.==+...+.+++.
T Consensus 475 renk~l~~~~sdlsrqv~~Ll~el~e~~~ 503 (1822)
T KOG4674|consen 475 RENKLLEQQISDLSRQVNVLLLELDELRK 503 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88877776666666555445555555443
No 24
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.85 E-value=1.7 Score=51.79 Aligned_cols=260 Identities=18% Similarity=0.232 Sum_probs=128.8
Q ss_pred hhhhhhhhhhHhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhh----h------hhHHHHH--hcccchhHHHHH
Q 007324 283 SRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKV----E------SNLAEAL--AAKNSEIETLVS 350 (608)
Q Consensus 283 ~rL~~lr~EN~QLEeLLr~E~~~~~S~~~r~k~lQ~ELs~ar~~v~k~----E------sdlteAL--AAKdSqLavL~v 350 (608)
.+|.-.|.+|+||+|.= +.+.+....||.+|-.+|....-+ | +|+++++ +.-|-++| .-
T Consensus 255 ~ElekmkiqleqlqEfk-------Skim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmA--EE 325 (1243)
T KOG0971|consen 255 KELEKMKIQLEQLQEFK-------SKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMA--EE 325 (1243)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--HH
Confidence 46777788888887753 445666777777777666654433 1 6666654 33333333 35
Q ss_pred HHHHHHHHHHhhHhHHHHHhhhhhhhhhhhhhh--------hhHHHH--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007324 351 SIDALKKQAALSEGNLASLQMNMESIMRNRELT--------ETRMIQ--ALREELASVERRAEEERAAHNATKMAAMERE 420 (608)
Q Consensus 351 rldeadq~l~~~e~~La~LQ~e~~RImqdh~~~--------e~q~lq--aLREeLa~AE~rL~~Eq~ah~Atr~aamERE 420 (608)
|.+..++.+.+..+.+++|..+.+=|--.-..+ ..+|.| ---.||.+|=-||+ -.-+|----.-+..
T Consensus 326 RaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLR-DlsA~ek~d~qK~~-- 402 (1243)
T KOG0971|consen 326 RAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLR-DLSASEKQDHQKLQ-- 402 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHH--
Confidence 677788888888888888888777554333322 123322 12235555555542 11111000000111
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhccC--CCchhHHHHH-
Q 007324 421 VELEHR---AAEASMALARIQRIADERTAKAGELEQKVAM---LEVECATLQQELQDMEARLKRGQK--KSPEEANQAI- 491 (608)
Q Consensus 421 ~elE~q---lAeastAL~~~QR~~~E~k~ra~eLeqqv~~---lea~~esl~QELqDyk~ka~Ril~--gs~e~Agqv~- 491 (608)
.+||.- +-+----=-++.|.++.....+++|+.||-. +++-++-|-----.|+.|+.-.=+ +.=+.+.+++
T Consensus 403 kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEalee~~E 482 (1243)
T KOG0971|consen 403 KELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEALEEMNE 482 (1243)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122322 2222222335677778888888888888765 233222221111113333322111 1113445555
Q ss_pred HH-HHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q 007324 492 QM-QAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTD 555 (608)
Q Consensus 492 ql-e~~reev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd~~~~Sr~s~~ELE~RlreLTE 555 (608)
|| ++-++..-++|+.+.-+.-++-++..++.++--=+--.-|-+-. -|.--..|..++++++|
T Consensus 483 QL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~K-fRelva~Lqdqlqe~~d 546 (1243)
T KOG0971|consen 483 QLQESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKK-FRELVAHLQDQLQELTD 546 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 33 55555556666666666555555544333322211111111111 14445566666777766
No 25
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.81 E-value=1.2 Score=51.19 Aligned_cols=32 Identities=19% Similarity=0.391 Sum_probs=22.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007324 445 TAKAGELEQKVAMLEVECATLQQELQDMEARL 476 (608)
Q Consensus 445 k~ra~eLeqqv~~lea~~esl~QELqDyk~ka 476 (608)
+.|..+||.+++.|+.++-...-++..|+..+
T Consensus 544 r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~ 575 (697)
T PF09726_consen 544 RQRRRQLESELKKLRRELKQKEEQIRELESEL 575 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777777777665
No 26
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=96.80 E-value=1.4 Score=53.69 Aligned_cols=117 Identities=18% Similarity=0.208 Sum_probs=61.6
Q ss_pred hhhhhhhhhhHhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHH---hcccchhHHHHHHHHHHHHHH
Q 007324 283 SRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEAL---AAKNSEIETLVSSIDALKKQA 359 (608)
Q Consensus 283 ~rL~~lr~EN~QLEeLLr~E~~~~~S~~~r~k~lQ~ELs~ar~~v~k~EsdlteAL---AAKdSqLavL~vrldeadq~l 359 (608)
.+|.+|..+.+.|++.|..=......+.++...|..++...-. +.+|..|+ ......++.-..++..++..+
T Consensus 742 ~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~Ps-----~~dL~~A~~~l~~A~~~~~~a~~~l~~a~~~l 816 (1353)
T TIGR02680 742 RRIAELDARLAAVDDELAELARELRALGARQRALADELAGAPS-----DRSLRAAHRRAAEAERQAESAERELARAARKA 816 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555544444456667777777777633322 33444432 223334444555555555555
Q ss_pred HhhHhHHHHHhhhhhhhhhhhhhh-hhHHHHHHHHHHHHHHHHHHH
Q 007324 360 ALSEGNLASLQMNMESIMRNRELT-ETRMIQALREELASVERRAEE 404 (608)
Q Consensus 360 ~~~e~~La~LQ~e~~RImqdh~~~-e~q~lqaLREeLa~AE~rL~~ 404 (608)
......++.........-.++... ....++++++.|....+.+..
T Consensus 817 ~~a~~~~~~a~~~l~~aaa~l~L~a~~~~l~~~~~aL~~y~~~l~~ 862 (1353)
T TIGR02680 817 AAAAAAWKQARRELERDAADLDLPTDPDALEAVGLALKRFGDHLHT 862 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555554 355566666666555555433
No 27
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.80 E-value=0.67 Score=46.43 Aligned_cols=62 Identities=29% Similarity=0.326 Sum_probs=29.3
Q ss_pred chhHHHHHHHHHHHHHHHhhHhHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 007324 343 SEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEE 405 (608)
Q Consensus 343 SqLavL~vrldeadq~l~~~e~~La~LQ~e~~RImqdh~~~e~q~lqaLREeLa~AE~rL~~E 405 (608)
.++..++.+++.........+..+..|..+.+..-.-+.+-+++ +++|+++|.--..--+.|
T Consensus 82 ~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~-i~~L~eEl~fl~~~heeE 143 (312)
T PF00038_consen 82 EELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQ-IQSLKEELEFLKQNHEEE 143 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHH-HHHHHHHHHHHHhhhhhh
Confidence 34445555555555555555555555544433333333333332 566666665544444333
No 28
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.79 E-value=1.2 Score=49.15 Aligned_cols=155 Identities=15% Similarity=0.279 Sum_probs=80.6
Q ss_pred HHHHHHHHHHhhhhhhhhhh-------hhhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHhhhhhhhhhhhhhh
Q 007324 311 ARIKQLEQELSVYKSEVTKV-------ESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELT 383 (608)
Q Consensus 311 ~r~k~lQ~ELs~ar~~v~k~-------EsdlteALAAKdSqLavL~vrldeadq~l~~~e~~La~LQ~e~~RImqdh~~~ 383 (608)
.++..|..||..++-..... +......+..++.....++..|..+...+......+...+. ++..-..
T Consensus 172 ~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~~~~k~-----Le~kL~~ 246 (522)
T PF05701_consen 172 EKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEELEAAKD-----LESKLAE 246 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHH
Confidence 33444555544443333332 23333444555555555555555555555555544422211 1111112
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 007324 384 ETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECA 463 (608)
Q Consensus 384 e~q~lqaLREeLa~AE~rL~~Eq~ah~Atr~aamERE~elE~qlAeastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~e 463 (608)
-+.-+..|+.+|..+-. .++..+. +...........|..+..-+++-+..+......+..+...++
T Consensus 247 a~~~l~~Lq~El~~~~~-----------~~l~~~~---~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~ve 312 (522)
T PF05701_consen 247 ASAELESLQAELEAAKE-----------SKLEEEA---EAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVE 312 (522)
T ss_pred HHHHHHHHHHHHHHHHH-----------HHHhhhH---HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23444555555544432 1122111 233334444555666777788888777777777777788888
Q ss_pred HHHHHHHHHHHHHhhccCCCc
Q 007324 464 TLQQELQDMEARLKRGQKKSP 484 (608)
Q Consensus 464 sl~QELqDyk~ka~Ril~gs~ 484 (608)
+|+-||...+....+.....+
T Consensus 313 sL~~ELe~~K~el~~lke~e~ 333 (522)
T PF05701_consen 313 SLRSELEKEKEELERLKEREK 333 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888887777777666665433
No 29
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.78 E-value=0.39 Score=47.23 Aligned_cols=176 Identities=23% Similarity=0.314 Sum_probs=115.9
Q ss_pred hhhcchhhHHHHHHHhhhhhhhhhhhhhhhHhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhccc
Q 007324 263 TISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKN 342 (608)
Q Consensus 263 ~~~~g~ske~rL~rvc~~ls~rL~~lr~EN~QLEeLLr~E~~~~~S~~~r~k~lQ~ELs~ar~~v~k~EsdlteALAAKd 342 (608)
..|.+..++.+|---+..+..+|++++.||. +|+ .+|---.+|=...+.-+.+|...|+.-+
T Consensus 6 vlSar~~ki~~L~n~l~elq~~l~~l~~ENk----~Lk--------------~lq~Rq~kAL~k~e~~e~~Lpqll~~h~ 67 (194)
T PF15619_consen 6 VLSARLHKIKELQNELAELQRKLQELRKENK----TLK--------------QLQKRQEKALQKYEDTEAELPQLLQRHN 67 (194)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH--------------HHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 3455667777787788888888888888888 433 2222222222223444677888888888
Q ss_pred chhHHHHHHHHHHHHHHHhhHhHHHHHhhhhh-------hhhh---hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 007324 343 SEIETLVSSIDALKKQAALSEGNLASLQMNME-------SIMR---NRELTETRMIQALREELASVERRAEEERAAHNAT 412 (608)
Q Consensus 343 SqLavL~vrldeadq~l~~~e~~La~LQ~e~~-------RImq---dh~~~e~q~lqaLREeLa~AE~rL~~Eq~ah~At 412 (608)
.++-+|+.+|-.++......+..|-....++- +|-+ |....+ -+.|..+|+.++..+...- -
T Consensus 68 eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~e---ReeL~~kL~~~~~~l~~~~-----~ 139 (194)
T PF15619_consen 68 EEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAE---REELQRKLSQLEQKLQEKE-----K 139 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh---HHHHHHHHHHHHHHHHHHH-----H
Confidence 88888888877766665555555544443333 3222 222222 3667777777777764321 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007324 413 KMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDME 473 (608)
Q Consensus 413 r~aamERE~elE~qlAeastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk 473 (608)
++.. ||+++.=+.-+ ..|.+.-+++|..+++..+..+.-+|..|+|-|.+.+
T Consensus 140 ki~~------Lek~leL~~k~---~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKe 191 (194)
T PF15619_consen 140 KIQE------LEKQLELENKS---FRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKE 191 (194)
T ss_pred HHHH------HHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2333 55555545555 7899999999999999999999999999999998754
No 30
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.61 E-value=0.86 Score=45.15 Aligned_cols=21 Identities=29% Similarity=0.503 Sum_probs=9.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHH
Q 007324 382 LTETRMIQALREELASVERRA 402 (608)
Q Consensus 382 ~~e~q~lqaLREeLa~AE~rL 402 (608)
.....=|+.|-.+|..|...+
T Consensus 88 ~~~eeri~~lE~~l~ea~~~~ 108 (237)
T PF00261_consen 88 QSDEERIEELEQQLKEAKRRA 108 (237)
T ss_dssp HHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444554444444
No 31
>PRK11637 AmiB activator; Provisional
Probab=96.61 E-value=1.3 Score=47.12 Aligned_cols=86 Identities=23% Similarity=0.265 Sum_probs=38.8
Q ss_pred hhhhhhhhhhhhhHhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHHHHHH
Q 007324 280 GLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQA 359 (608)
Q Consensus 280 ~ls~rL~~lr~EN~QLEeLLr~E~~~~~S~~~r~k~lQ~ELs~ar~~v~k~EsdlteALAAKdSqLavL~vrldeadq~l 359 (608)
.+..+|.+++.+.++++.-+..-......+...++.++.+|+.....+. ++...|...+.+|+.|...+......+
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~----~~~~~i~~~~~ei~~l~~eI~~~q~~l 119 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLR----ETQNTLNQLNKQIDELNASIAKLEQQQ 119 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666655555544333444444445555555443322222 222333333444444444444444444
Q ss_pred HhhHhHHHHH
Q 007324 360 ALSEGNLASL 369 (608)
Q Consensus 360 ~~~e~~La~L 369 (608)
......|..+
T Consensus 120 ~~~~~~l~~r 129 (428)
T PRK11637 120 AAQERLLAAQ 129 (428)
T ss_pred HHHHHHHHHH
Confidence 4444444333
No 32
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.60 E-value=2.2 Score=49.84 Aligned_cols=98 Identities=26% Similarity=0.308 Sum_probs=82.0
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhh---hhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHhhhhhhhhhhhhh
Q 007324 306 SRSYEARIKQLEQELSVYKSEVTKVE---SNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL 382 (608)
Q Consensus 306 ~~S~~~r~k~lQ~ELs~ar~~v~k~E---sdlteALAAKdSqLavL~vrldeadq~l~~~e~~La~LQ~e~~RImqdh~~ 382 (608)
.++++--+..++.|+...++++...+ +.+-..|-+..+....+|.++|.+..+|.-...-|.++|..+.-+...+.+
T Consensus 240 i~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d 319 (775)
T PF10174_consen 240 IASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSD 319 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 55666667778999999988887663 445578999999999999999999999999999999999999999888888
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 007324 383 TETRMIQALREELASVERRAEE 404 (608)
Q Consensus 383 ~e~q~lqaLREeLa~AE~rL~~ 404 (608)
. -+=|+.|++.|+..+.....
T Consensus 320 ~-r~hi~~lkesl~~ke~~~~~ 340 (775)
T PF10174_consen 320 M-RQHIEVLKESLRAKEQEAEM 340 (775)
T ss_pred H-HHHHHHHHHHHHHHHHHHHH
Confidence 7 66688899988888765544
No 33
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.54 E-value=2.4 Score=49.54 Aligned_cols=190 Identities=19% Similarity=0.242 Sum_probs=101.2
Q ss_pred hhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH---
Q 007324 332 SNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAA--- 408 (608)
Q Consensus 332 sdlteALAAKdSqLavL~vrldeadq~l~~~e~~La~LQ~e~~RImqdh~~~e~q~lqaLREeLa~AE~rL~~Eq~a--- 408 (608)
.+|-+-+-.++..|.+|..+|+..--.+.-....|..+ +.|+.- |.++.+ -+.++..|..|-.-..+-++.
T Consensus 381 ~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~---k~Rl~~-~~d~~~--~~~~~~~lEea~~eker~~e~l~e 454 (775)
T PF10174_consen 381 EDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEE---KERLSS-QADSSN--EDEALETLEEALREKERLQERLEE 454 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhc-cccccc--hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555444444444 666665 444421 122334444443333333332
Q ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH--------------HHHHHHHHHHHHHHHH
Q 007324 409 -HNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAM--------------LEVECATLQQELQDME 473 (608)
Q Consensus 409 -h~Atr~aamERE~elE~qlAeastAL~~~QR~~~E~k~ra~eLeqqv~~--------------lea~~esl~QELqDyk 473 (608)
+.-......++--.+...+...-+-+..+|..+.|..--+..+.+++.. |...|+..+-+..+|+
T Consensus 455 ~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~ 534 (775)
T PF10174_consen 455 QRERAEKERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLE 534 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHH
Confidence 1111111122112233346666677777888888888766666666554 5566666676667666
Q ss_pred HHHhhccCCCchhH-------HHHH----HHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHH
Q 007324 474 ARLKRGQKKSPEEA-------NQAI----QMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEM 528 (608)
Q Consensus 474 ~ka~Ril~gs~e~A-------gqv~----qle~~reev~~areq~~~~e~a~qe~~ae~q~~e~El 528 (608)
......- ..+.-. +.|. .....+.+|+++..-+..++..+-....++-.++-+|
T Consensus 535 ~ql~k~~-~~~e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~EK~~ke~ki~~LekeL 599 (775)
T PF10174_consen 535 KQLEKLR-ANAELRDRIQQLEQEVTRYREESEKAQAEVERLLDILREAENEKNDKEKKIGELEKEL 599 (775)
T ss_pred HHHHHHH-hCHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 6554411 111000 1111 2245788899998888888888888766666666554
No 34
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.53 E-value=0.47 Score=46.69 Aligned_cols=161 Identities=22% Similarity=0.335 Sum_probs=122.9
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------cCCCchhHHHHH-----HHHHHHHHHHHHHH
Q 007324 437 IQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRG------QKKSPEEANQAI-----QMQAWQDEVERARQ 505 (608)
Q Consensus 437 ~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka~Ri------l~gs~e~Agqv~-----qle~~reev~~are 505 (608)
.+|.+..+.-++.+|+.++.-+...++.++-|..-++.--.|- .+++.....+++ ++.+|++.+...++
T Consensus 3 ~~rvlSar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~ 82 (194)
T PF15619_consen 3 TQRVLSARLHKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQE 82 (194)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888899999999999999888888888877766554442 255666667776 44889999999999
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh----HHHHHHHHhHHH
Q 007324 506 GQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMAS----EKAAAEFQLEKE 581 (608)
Q Consensus 506 q~~~~e~a~qe~~ae~q~~e~El~~~Kqd~~~~Sr~s~~ELE~RlreLTE~LyqKQTqLEaLat----EKaAl~fQLER~ 581 (608)
+.+..+..+.....++..++.++..+++-...=.--+-.+|..+|..++..|..+--.+..|.. .-++...||--+
T Consensus 83 ~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e 162 (194)
T PF15619_consen 83 QERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASE 162 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999998999998888888877665211224578999999999888877666555432 345667777777
Q ss_pred HHHHhhhhhhhhhhcc
Q 007324 582 MNRLQEVQVCQRVLHS 597 (608)
Q Consensus 582 eqq~k~~q~~~~~~~~ 597 (608)
....++++.+...++.
T Consensus 163 ~kK~~~~~~~~~~l~~ 178 (194)
T PF15619_consen 163 KKKHKEAQEEVKSLQE 178 (194)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7788888877776653
No 35
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.46 E-value=3.2 Score=49.95 Aligned_cols=227 Identities=18% Similarity=0.222 Sum_probs=138.3
Q ss_pred hHHHHHHHHHHHHHHHhhHhHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh-----HHHHHHHHHH
Q 007324 345 IETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAH-----NATKMAAMER 419 (608)
Q Consensus 345 LavL~vrldeadq~l~~~e~~La~LQ~e~~RImqdh~~~e~q~lqaLREeLa~AE~rL~~Eq~ah-----~Atr~aamER 419 (608)
|....-...-+++++..+...|+-+ ..|+-++..-.....++.|.+++-+.+..+++...+. ....++++.-
T Consensus 703 le~~~~kf~~l~~ql~l~~~~l~l~---~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~ 779 (1174)
T KOG0933|consen 703 LEAQSQKFRDLKQQLELKLHELALL---EKRLEQNEFHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMK 779 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555666677777777777666 4445444444457778899999999999999888873 3334555555
Q ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHH
Q 007324 420 EVELEHR--AAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQ 497 (608)
Q Consensus 420 E~elE~q--lAeastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka~Ril~gs~e~Agqv~qle~~r 497 (608)
+++-++. +.+...-|..+.+.+++.++++..-++.+-.+..+++.+.+++.-++.- |+...
T Consensus 780 d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~-----------------l~~~~ 842 (1174)
T KOG0933|consen 780 DAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQ-----------------LEQLE 842 (1174)
T ss_pred HhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHH
Confidence 5555444 8888888888899999999999999999999999999999998877752 22333
Q ss_pred HHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhh---hhhHHHHHHHHHHHHHHH---HHHHHHHHHhhhHH
Q 007324 498 DEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYS---REEHMELEKRYRELTDLL---YYKQTQLETMASEK 571 (608)
Q Consensus 498 eev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd~~~~S---r~s~~ELE~RlreLTE~L---yqKQTqLEaLatEK 571 (608)
.++..+-..+..++.++...+..+.++..++.-.+--+.... +..-.+-|+=+.+..++- -.+---+.+|.+|+
T Consensus 843 ~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~ 922 (1174)
T KOG0933|consen 843 KQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEK 922 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhH
Confidence 344444445555555555555555555555554443333110 000111122222211110 00112234566788
Q ss_pred HHHHHHhHHHHHHHhhhhhh
Q 007324 572 AAAEFQLEKEMNRLQEVQVC 591 (608)
Q Consensus 572 aAl~fQLER~eqq~k~~q~~ 591 (608)
+..--.+|.+++.+-=...|
T Consensus 923 ~~~~k~v~~l~~k~~wi~~e 942 (1174)
T KOG0933|consen 923 ANARKEVEKLLKKHEWIGDE 942 (1174)
T ss_pred HHHHHHHHHHHHhccchhHH
Confidence 88877777777766544433
No 36
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=96.44 E-value=3.6 Score=50.30 Aligned_cols=197 Identities=21% Similarity=0.248 Sum_probs=112.0
Q ss_pred cchhhhHHHHhhHHHhhhhcchhhHHHHHHHhhhhhhhhhhhhhhhHhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhh
Q 007324 247 TKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSE 326 (608)
Q Consensus 247 ~K~qdql~ea~~ll~~~~~~g~ske~rL~rvc~~ls~rL~~lr~EN~QLEeLLr~E~~~~~S~~~r~k~lQ~ELs~ar~~ 326 (608)
.+.+-+|+++.-.+.+.+ .+..+|-..-..++++++....+|.-+++.|..=-..+..+....+.++.++-..+.
T Consensus 542 ~~~rk~le~~~~d~~~e~----~~~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~- 616 (1317)
T KOG0612|consen 542 NSLRKQLEEAELDMRAES----EDAGKLRKHSKELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERR- 616 (1317)
T ss_pred HHHHHHHHHhhhhhhhhH----HHHhhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 344445555444444322 345667777888888888888888888888775555566666666777766633321
Q ss_pred hhhhhhhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHhhhhhhhhhhhhhhhhHHH-HHHHHHHHHHHHHHHHH
Q 007324 327 VTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMI-QALREELASVERRAEEE 405 (608)
Q Consensus 327 v~k~EsdlteALAAKdSqLavL~vrldeadq~l~~~e~~La~LQ~e~~RImqdh~~~e~q~l-qaLREeLa~AE~rL~~E 405 (608)
-.....+.+++-++.+..|...+.+-...+.-.++ |... .+.-+++.+..++ .-+.-+|...+-.++++
T Consensus 617 ---~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~e-l~r~------~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq~ 686 (1317)
T KOG0612|consen 617 ---QRTEISEIIAELKEEISSLEETLKAGKKELLKVEE-LKRE------NQERISDSEKEALEIKLERKLKMLQNELEQE 686 (1317)
T ss_pred ---HHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHH-HHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 14566777777777777777666665555444333 2222 1111222221122 22334455555556666
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 007324 406 RAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQD 471 (608)
Q Consensus 406 q~ah~Atr~aamERE~elE~qlAeastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqD 471 (608)
...|+..|+..- ...+..|+-.+.+++.--..++.-+--...+|+.|+-.+.-
T Consensus 687 ~~E~~~~~L~~~-------------e~~~~e~~~~lseek~ar~k~e~~~~~i~~e~e~L~~d~~~ 739 (1317)
T KOG0612|consen 687 NAEHHRLRLQDK-------------EAQMKEIESKLSEEKSAREKAENLLLEIEAELEYLSNDYKQ 739 (1317)
T ss_pred HHHHHHHHHhhH-------------HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 666655544333 33444566667776655555666666667777777654433
No 37
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.42 E-value=2.1 Score=47.38 Aligned_cols=29 Identities=34% Similarity=0.409 Sum_probs=19.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007324 446 AKAGELEQKVAMLEVECATLQQELQDMEA 474 (608)
Q Consensus 446 ~ra~eLeqqv~~lea~~esl~QELqDyk~ 474 (608)
..+.+|+.++......+..|+.||..|..
T Consensus 235 ~~~k~Le~kL~~a~~~l~~Lq~El~~~~~ 263 (522)
T PF05701_consen 235 EAAKDLESKLAEASAELESLQAELEAAKE 263 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456666666677777777777777765
No 38
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.38 E-value=3.3 Score=50.41 Aligned_cols=204 Identities=21% Similarity=0.313 Sum_probs=115.4
Q ss_pred HHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 007324 336 EALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMA 415 (608)
Q Consensus 336 eALAAKdSqLavL~vrldeadq~l~~~e~~La~LQ~e~~RImqdh~~~e~q~lqaLREeLa~AE~rL~~Eq~ah~Atr~a 415 (608)
+.|--+..+|+.|+..++++...... ....+.||..+.+|--.. ++.=++++..+-.++ .
T Consensus 858 ~~l~~~~~~ie~l~kE~e~~qe~~~K-k~~i~~lq~~i~~i~~e~-------~q~qk~kv~~~~~~~------------~ 917 (1293)
T KOG0996|consen 858 KRLKELEEQIEELKKEVEELQEKAAK-KARIKELQNKIDEIGGEK-------VQAQKDKVEKINEQL------------D 917 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHhhchh-------hHHhHHHHHHHHHHH------------H
Confidence 44555667788888888888744444 778888888888775433 233333333322222 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHH----
Q 007324 416 AMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAI---- 491 (608)
Q Consensus 416 amERE~elE~qlAeastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka~Ril~gs~e~Agqv~---- 491 (608)
.|+..++-...++....|-+.--..+..+|+..+..++-+|+.|.+++.+.+.++--.-+---+....+-
T Consensus 918 ------~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~ 991 (1293)
T KOG0996|consen 918 ------KLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESLKEIKK 991 (1293)
T ss_pred ------HHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1333344444555555566666666667777777777777777777777777666543211111111111
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh---------------------hhhhHHHHHHHH
Q 007324 492 QMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHY---------------------SREEHMELEKRY 550 (608)
Q Consensus 492 qle~~reev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd~~~~---------------------Sr~s~~ELE~Rl 550 (608)
++..+..++........+.....=.++-.++++..++.-++-+.-.| ...+.-+||.++
T Consensus 992 ~~~~~k~~~e~i~k~~~~lk~~rId~~~K~e~~~~~l~e~~~~~~~~~k~~~~l~~~~~tE~~~~~~~~~~~~Eeleae~ 1071 (1293)
T KOG0996|consen 992 ELRDLKSELENIKKSENELKAERIDIENKLEAINGELNEIESKIKQPEKELKKLSLCNMTETRPQIELDVESPEELEAEM 1071 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhhhhHHHhhCccccccchhhccccccccCChHHHHhhh
Confidence 33455666666666666666533336666677777766666555433 122446677776
Q ss_pred HHHHHHHHHHHHHHHHh
Q 007324 551 RELTDLLYYKQTQLETM 567 (608)
Q Consensus 551 reLTE~LyqKQTqLEaL 567 (608)
+-+.++-|+++||.=
T Consensus 1072 --~~~~i~e~i~~lE~~ 1086 (1293)
T KOG0996|consen 1072 --LEDNINEKIALLEKR 1086 (1293)
T ss_pred --cHhhHHHHHHHHHHH
Confidence 223344456666543
No 39
>PF13514 AAA_27: AAA domain
Probab=96.38 E-value=3.3 Score=49.26 Aligned_cols=137 Identities=24% Similarity=0.305 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCc----hhHHHHH----HHHHHHHHHH
Q 007324 430 ASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSP----EEANQAI----QMQAWQDEVE 501 (608)
Q Consensus 430 astAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka~Ril~gs~----e~Agqv~----qle~~reev~ 501 (608)
.+..|...=..+.+...++..++.++..++..++.+..+|..+...-.-.+...+ +...... +...++.++.
T Consensus 785 ~~~~L~~~l~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~~a~~~~~e~l~~~~~~~~~~~~l~~~~~ 864 (1111)
T PF13514_consen 785 ALEALRARLEEAREAQEERERLQEQLEELEEELEQAEEELEELEAELAELLEQAGVEDEEELREAEERAEERRELREELE 864 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344333333444445677778888888888888888888888777766664322 2222222 2344555666
Q ss_pred HHHHhHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007324 502 RARQGQRDAEN--KLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMAS 569 (608)
Q Consensus 502 ~areq~~~~e~--a~qe~~ae~q~~e~El~~~Kqd~~~~Sr~s~~ELE~RlreLTE~LyqKQTqLEaLat 569 (608)
.++.++..... .+.++.+++. ...+..+..++... .....+|+.++.+|.+.+-..+..|+.|..
T Consensus 865 ~~~~~l~~~~~~~~~~~l~~e~~--~~d~~~l~~~l~~l-~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~ 931 (1111)
T PF13514_consen 865 DLERQLERQADGLDLEELEEELE--ELDPDELEAELEEL-EEELEELEEELEELQEERAELEQELEALEG 931 (1111)
T ss_pred HHHHHHHhhcCcccHHHHHHHhh--ccCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 65555522211 1122222210 01112222222211 112234566666666666666666665543
No 40
>PRK11637 AmiB activator; Provisional
Probab=96.37 E-value=1.8 Score=46.08 Aligned_cols=49 Identities=24% Similarity=0.250 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 007324 423 LEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQD 471 (608)
Q Consensus 423 lE~qlAeastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqD 471 (608)
++.++......+..+++.+..-..++..++.++..++..++..+..|..
T Consensus 80 l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~ 128 (428)
T PRK11637 80 QEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAA 128 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555566666666666666666666666666666666665555
No 41
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.25 E-value=2.5 Score=46.49 Aligned_cols=167 Identities=20% Similarity=0.247 Sum_probs=89.4
Q ss_pred hhhhhhhhhhHhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHHHHH----
Q 007324 283 SRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQ---- 358 (608)
Q Consensus 283 ~rL~~lr~EN~QLEeLLr~E~~~~~S~~~r~k~lQ~ELs~ar~~v~k~EsdlteALAAKdSqLavL~vrldeadq~---- 358 (608)
.||.+.+.+.++++..++.=....+.|...+|++..+++...+.+...++++.. .+..|+.+..+|.....+
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~----~~~~I~~~~~~l~~l~~q~r~q 113 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKK----LRKQIADLNARLNALEVQEREQ 113 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHhhHHHHHHHHHHHHHHHHHH
Confidence 688889999998888888777778888888888888887777776666555433 233344444444333333
Q ss_pred HHhhHhHHHHHhhh------hhhhhhhhhhhh-------hHHHHHHHH----------HHHHHHHHHHHHHHHhHHHHHH
Q 007324 359 AALSEGNLASLQMN------MESIMRNRELTE-------TRMIQALRE----------ELASVERRAEEERAAHNATKMA 415 (608)
Q Consensus 359 l~~~e~~La~LQ~e------~~RImqdh~~~e-------~q~lqaLRE----------eLa~AE~rL~~Eq~ah~Atr~a 415 (608)
-......|.+++-. .-.+..++.... ..|...+++ .|..-....+.|+..++.+...
T Consensus 114 r~~La~~L~A~~r~g~~p~~~ll~~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~e 193 (420)
T COG4942 114 RRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSE 193 (420)
T ss_pred HHHHHHHHHHHHhccCCCCchhhcChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23344455555442 112333332321 333333333 3344444555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 007324 416 AMEREVELEHRAAEASMALARIQRIADERTAKAGELEQ 453 (608)
Q Consensus 416 amERE~elE~qlAeastAL~~~QR~~~E~k~ra~eLeq 453 (608)
-.+++.+|..-+.|=--.++.++..+..+..|..+|..
T Consensus 194 q~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~ 231 (420)
T COG4942 194 QRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRA 231 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555555444444444444444444444444433333
No 42
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=96.20 E-value=4.6 Score=49.54 Aligned_cols=8 Identities=25% Similarity=0.534 Sum_probs=5.5
Q ss_pred CCCCCccc
Q 007324 150 ATPNGEIL 157 (608)
Q Consensus 150 ~t~nGe~~ 157 (608)
++|+|-++
T Consensus 636 v~p~~~~~ 643 (1353)
T TIGR02680 636 VTADGTLQ 643 (1353)
T ss_pred eCCCcccc
Confidence 67777764
No 43
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.13 E-value=3.7 Score=47.43 Aligned_cols=89 Identities=24% Similarity=0.285 Sum_probs=42.1
Q ss_pred HHHHHhhhhhhhhhhhhhhhHhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcc---cchhHHHH
Q 007324 273 RLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAK---NSEIETLV 349 (608)
Q Consensus 273 rL~rvc~~ls~rL~~lr~EN~QLEeLLr~E~~~~~S~~~r~k~lQ~ELs~ar~~v~k~EsdlteALAAK---dSqLavL~ 349 (608)
||-+=|.-|+.+|+..| |+|.-||+-+..+.+-+. .+..||...|.+-+-.+.-+.....++ ...|..|.
T Consensus 422 rLE~dvkkLraeLq~~R----q~E~ELRsqis~l~~~Er---~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LE 494 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSR----QSEQELRSQISSLTNNER---SLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLE 494 (697)
T ss_pred HHHHHHHHHHHHHHhhh----hhHHHHHHHHhhccccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666665 445566666555444222 344455555554454443333333222 22334444
Q ss_pred HHHHHHHHHHHhhHhHHHH
Q 007324 350 SSIDALKKQAALSEGNLAS 368 (608)
Q Consensus 350 vrldeadq~l~~~e~~La~ 368 (608)
.+|-+-...-...+..|.+
T Consensus 495 krL~eE~~~R~~lEkQL~e 513 (697)
T PF09726_consen 495 KRLAEERRQRASLEKQLQE 513 (697)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444433
No 44
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.11 E-value=4.8 Score=48.54 Aligned_cols=317 Identities=19% Similarity=0.215 Sum_probs=154.8
Q ss_pred HHhhhhcchhhHHHHHHHhhhhhhhhhhhhhhhHhHHH---HHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHH
Q 007324 260 LKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEE---LLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAE 336 (608)
Q Consensus 260 l~~~~~~g~ske~rL~rvc~~ls~rL~~lr~EN~QLEe---LLr~E~~~~~S~~~r~k~lQ~ELs~ar~~v~k~Esdlte 336 (608)
|+.++.+-.+|+.+|---.+-+..-|..+|.|.++||- -||.|.+-.-+..-|++.-.+||...|.+.++|+....+
T Consensus 175 L~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~yke 254 (1195)
T KOG4643|consen 175 LEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTTYKE 254 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCccch
Confidence 34444444444444444444444445555555554442 234444444455555555566666666666666311111
Q ss_pred HH----------------------------------------hcccchhHHHHHHHHHHHHHHHhhHhHHHHHhhhhhhh
Q 007324 337 AL----------------------------------------AAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESI 376 (608)
Q Consensus 337 AL----------------------------------------AAKdSqLavL~vrldeadq~l~~~e~~La~LQ~e~~RI 376 (608)
++ +.--++|=.|+..++-+.-....-..+++.|+.+++-|
T Consensus 255 rlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstL 334 (1195)
T KOG4643|consen 255 RLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTL 334 (1195)
T ss_pred hhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 11 11124444555555555555556666777777776654
Q ss_pred h-------------hhhh---hhhhHHHHHHHHHHHHHHHHHHHHHHHh----------------HHHHHHHHHHHHH-H
Q 007324 377 M-------------RNRE---LTETRMIQALREELASVERRAEEERAAH----------------NATKMAAMEREVE-L 423 (608)
Q Consensus 377 m-------------qdh~---~~e~q~lqaLREeLa~AE~rL~~Eq~ah----------------~Atr~aamERE~e-l 423 (608)
+ ++|+ +.++--++..++.|-. .++++-+-+.| .++++-.|+-+|. |
T Consensus 335 q~q~eqL~~~~ellq~~se~~E~en~Sl~~e~eqLts-~ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnL 413 (1195)
T KOG4643|consen 335 QVQKEQLDGQMELLQIFSENEELENESLQVENEQLTS-DRALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNL 413 (1195)
T ss_pred HHHHHHhhhhhhHhhhhhcchhhhhhhHHHHHHHhhh-HHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhH
Confidence 3 2322 2246667778888876 56666666664 4455555554443 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHH-HHHHHHHHH
Q 007324 424 EHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQM-QAWQDEVER 502 (608)
Q Consensus 424 E~qlAeastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka~Ril~gs~e~Agqv~ql-e~~reev~~ 502 (608)
+-. ..- ++-.+.+.+....+|+--.|.|..+.+.|.++-.--.--..|-...- +.-+++..+ ...-++...
T Consensus 414 s~k----~e~---Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~-e~~~q~ls~~~Q~~~et~e 485 (1195)
T KOG4643|consen 414 SKK----HEI---LEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLEN-EELDQLLSLQDQLEAETEE 485 (1195)
T ss_pred hHH----HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-HHHHHHHHHHHHHHHHHHH
Confidence 111 111 34444455555555555556666666555554333222112211000 111222211 222233444
Q ss_pred HHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh----hh----------h------hhhHHHHHHHHHHHHHHHHHHHH
Q 007324 503 ARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAE----HY----------S------REEHMELEKRYRELTDLLYYKQT 562 (608)
Q Consensus 503 areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd~~----~~----------S------r~s~~ELE~RlreLTE~LyqKQT 562 (608)
++.++......+.....++.-+.....-+|.+.. +| + -..-.-|-++++-|..+ -||++
T Consensus 486 l~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t-~qn~~ 564 (1195)
T KOG4643|consen 486 LLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTT-SQNGA 564 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-hHHHH
Confidence 4444444444443333333322222222222222 22 0 01234566677777777 79999
Q ss_pred HHHHhhhHH--------------HHHHHHhHHHHHHHh
Q 007324 563 QLETMASEK--------------AAAEFQLEKEMNRLQ 586 (608)
Q Consensus 563 qLEaLatEK--------------aAl~fQLER~eqq~k 586 (608)
.||---.+| +++.|+.|.++.+.-
T Consensus 565 ~LEq~~n~lE~~~~elkk~idaL~alrrhke~LE~e~m 602 (1195)
T KOG4643|consen 565 LLEQNNNDLELIHNELKKYIDALNALRRHKEKLEEEIM 602 (1195)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 998655443 588888888887753
No 45
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.11 E-value=5.3 Score=48.99 Aligned_cols=229 Identities=19% Similarity=0.228 Sum_probs=123.8
Q ss_pred cchhhhHHHHhhHHHhhhhcchhhHHHHHHHhhhhhhhhhhhhhhhHhHHHHHHHHHHH-------hHHHHHHHHHHHHH
Q 007324 247 TKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAEREL-------SRSYEARIKQLEQE 319 (608)
Q Consensus 247 ~K~qdql~ea~~ll~~~~~~g~ske~rL~rvc~~ls~rL~~lr~EN~QLEeLLr~E~~~-------~~S~~~r~k~lQ~E 319 (608)
.+.+..|.+-+++|.+...+ ..-.+-|+...+-|++.|+.++.-..|+|.-|.+=-.+ +.||......|+.-
T Consensus 1204 ~~me~kl~~ir~il~~~svs-~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~ 1282 (1758)
T KOG0994|consen 1204 LDMEEKLEEIRAILSAPSVS-AEDIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTT 1282 (1758)
T ss_pred HHHHHHHHHHHHHhcCCCcc-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHH
Confidence 35677788888888554333 33456677777778888888887777777777622222 33444443333333
Q ss_pred Hhhhhhhhhhh-hhhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHhhhh---hhhhhhhhhh-----hhHHHHH
Q 007324 320 LSVYKSEVTKV-ESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNM---ESIMRNRELT-----ETRMIQA 390 (608)
Q Consensus 320 Ls~ar~~v~k~-EsdlteALAAKdSqLavL~vrldeadq~l~~~e~~La~LQ~e~---~RImqdh~~~-----e~q~lqa 390 (608)
+...+-..++. ++|+.-|+ |+--..-..+++ |.+++.+....|+++.... +.++++.++. .+++|..
T Consensus 1283 ~keL~e~~~~ik~sdi~GA~---~~~r~a~~~s~e-a~~r~~~s~~~l~s~~~~sR~e~l~~k~k~~f~~~~~n~~~L~e 1358 (1758)
T KOG0994|consen 1283 YKELREQLEKIKESDILGAF---NSTRHAYEQSAE-AERRVDASSRELASLVDQSRVEELLVKQKGDFGGLAENSRLLVE 1358 (1758)
T ss_pred HHHHHHHHHHhhccCchhHH---HHHHHHHHHHHH-HHHhhhhhhhcccchhhhhHHHHHHHHhhhcccccccccHHHHH
Confidence 33333334555 55554443 222222222222 2333444444444443222 1233444333 3678888
Q ss_pred HHHHHHHHHHHHHHHHHHh---------------------------------HHHHHHHHHHHHHHHHHHH---HHHHHH
Q 007324 391 LREELASVERRAEEERAAH---------------------------------NATKMAAMEREVELEHRAA---EASMAL 434 (608)
Q Consensus 391 LREeLa~AE~rL~~Eq~ah---------------------------------~Atr~aamERE~elE~qlA---eastAL 434 (608)
|+.+|++-+-.---|+..- .-+..-++.-+.+|-.-++ ...-.+
T Consensus 1359 l~~~l~sL~L~~lne~vCG~p~apC~s~CGG~gC~~~~~cGg~sC~Ga~t~A~~A~~~A~~~~~~l~~~~ae~eq~~~~v 1438 (1758)
T KOG0994|consen 1359 LRAELSSLPLTPLNEQVCGAPGAPCDSLCGGAGCRQDGTCGGLSCRGAVTRAGGALLMAGDADTQLRSKLAEAEQTLSMV 1438 (1758)
T ss_pred HHHHhcCCCCchhhHHhcCCCCCCCCCCCCCCCCCCCCCccCccccchhcccchHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 8888887765555555430 1111122221112211122 223334
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 007324 435 ARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQ 480 (608)
Q Consensus 435 ~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka~Ril 480 (608)
+.+.+.+.+.+.+|..+..++...+...++.++||...-+..+..|
T Consensus 1439 ~ea~~~aseA~~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~~Fl 1484 (1758)
T KOG0994|consen 1439 REAKLSASEAQQSAQRALEQANASRSQMEESNRELRNLIQQVRDFL 1484 (1758)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4467777778888888888888888888888888877666665555
No 46
>PF13514 AAA_27: AAA domain
Probab=96.00 E-value=5.1 Score=47.78 Aligned_cols=96 Identities=19% Similarity=0.234 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHH
Q 007324 409 HNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEAN 488 (608)
Q Consensus 409 h~Atr~aamERE~elE~qlAeastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka~Ril~gs~e~Ag 488 (608)
.|..-|....+-.+.=+.-++.++-|..+++.+.+..+++..+..++..+....+.+.......=.-+. .+++|
T Consensus 527 ~fe~a~~~aD~laD~~~~~a~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~g--~p~~p---- 600 (1111)
T PF13514_consen 527 AFEAAVREADELADRRLREAERAARLAQLRARLEEARARLARAQARLAAAEAALAALEAAWAALWAAAG--LPLSP---- 600 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCCCh----
Confidence 455555555555554455666677777777888888888888887777777777777776665544433 34443
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHH
Q 007324 489 QAIQMQAWQDEVERARQGQRDAEN 512 (608)
Q Consensus 489 qv~qle~~reev~~areq~~~~e~ 512 (608)
-.|..|....+.+.........
T Consensus 601 --~~~~~Wl~~~~~~~~~~~~~~~ 622 (1111)
T PF13514_consen 601 --AEMRDWLARREAALEAAEELRA 622 (1111)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHH
Confidence 3466787777777666655444
No 47
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=95.98 E-value=6 Score=48.55 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHh
Q 007324 549 RYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQ 586 (608)
Q Consensus 549 RlreLTE~LyqKQTqLEaLatEKaAl~fQLER~eqq~k 586 (608)
||..|--...-++-.||..++|-+-|.-.||+.++-++
T Consensus 1711 ~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~I~ 1748 (1758)
T KOG0994|consen 1711 RLKDLELEYLRNEQALEDKAAELAGLEKRVESVLDHIN 1748 (1758)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 33444333444555666666665555555555555443
No 48
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=95.95 E-value=0.0019 Score=74.25 Aligned_cols=99 Identities=23% Similarity=0.311 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh---------------h---hhhHHHHHHHHHHHHHH
Q 007324 495 AWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHY---------------S---REEHMELEKRYRELTDL 556 (608)
Q Consensus 495 ~~reev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd~~~~---------------S---r~s~~ELE~RlreLTE~ 556 (608)
.+..++..++.++.+++.+++..+..+.-+.++|..+|.+++.- + ++-+++||.-.+.-++.
T Consensus 465 ~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~LE~E~k~r~~~ 544 (859)
T PF01576_consen 465 RLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQLESLEAELEEERKERAEA 544 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhHHHHHHHHHHHH
Confidence 35567777888888888888888888888888888888888621 1 22457788888888888
Q ss_pred HHHHHH----------HHHHhhhHHHHHHHHhHHHHHHHhhhhhhhh
Q 007324 557 LYYKQT----------QLETMASEKAAAEFQLEKEMNRLQEVQVCQR 593 (608)
Q Consensus 557 LyqKQT----------qLEaLatEKaAl~fQLER~eqq~k~~q~~~~ 593 (608)
+-.|.- +|+..-.-+.-+.-++.+...+++++|....
T Consensus 545 ~r~kkKLE~~l~eLe~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~le 591 (859)
T PF01576_consen 545 LREKKKLESDLNELEIQLDHANRANEEAQKQLKKLQAQLKDLQRELE 591 (859)
T ss_dssp -----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhH
Confidence 777743 3444444455666677777888887776543
No 49
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=95.83 E-value=2.6 Score=45.09 Aligned_cols=35 Identities=11% Similarity=0.227 Sum_probs=22.8
Q ss_pred HHHHHHHHhhhHHHHHHHHhHHHHHHHhhhhhhhh
Q 007324 559 YKQTQLETMASEKAAAEFQLEKEMNRLQEVQVCQR 593 (608)
Q Consensus 559 qKQTqLEaLatEKaAl~fQLER~eqq~k~~q~~~~ 593 (608)
.++..+.+|-.|-....-.++-+.+++.+++....
T Consensus 352 ~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~~~~~ 386 (498)
T TIGR03007 352 EVEAELTQLNRDYEVNKSNYEQLLTRRESAEVSKQ 386 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 45666666666666666666777777777665443
No 50
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=95.82 E-value=5.4 Score=46.69 Aligned_cols=72 Identities=22% Similarity=0.317 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007324 496 WQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYS--REEHMELEKRYRELTDLLYYKQTQLETM 567 (608)
Q Consensus 496 ~reev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd~~~~S--r~s~~ELE~RlreLTE~LyqKQTqLEaL 567 (608)
-.+++.+++--++-.+.-.+.+.+++.+|..|.+.|+...+.|- +..--.|.-||..+-.|.--|---+|-|
T Consensus 864 reGElthlq~e~~~le~~Rs~laeElvklT~e~e~l~ek~~~~p~~~~~ledL~qRy~a~LqmyGEk~Ee~EEL 937 (961)
T KOG4673|consen 864 REGELTHLQTELASLESIRSSLAEELVKLTAECEKLREKADRVPGIKAELEDLRQRYAAALQMYGEKDEELEEL 937 (961)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 34688999999999999999999999999999999999999773 3344667778888777776666665543
No 51
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.80 E-value=4.7 Score=45.91 Aligned_cols=290 Identities=20% Similarity=0.259 Sum_probs=170.7
Q ss_pred hhHHHHHHHhhhhhhhhhhhhhhhHhHHHHHHHHHHH----hHHHHHHHHHHHHHHhhhhhhhhhhh----------hhH
Q 007324 269 SKEARLARVCAGLSSRLQEYKSENAQLEELLVAEREL----SRSYEARIKQLEQELSVYKSEVTKVE----------SNL 334 (608)
Q Consensus 269 ske~rL~rvc~~ls~rL~~lr~EN~QLEeLLr~E~~~----~~S~~~r~k~lQ~ELs~ar~~v~k~E----------sdl 334 (608)
.-..||.....++...++.++..|.-|++++. |++. ..|++.+.+.||.++++.++-+.-.+ .-|
T Consensus 221 Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~-e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l 299 (581)
T KOG0995|consen 221 ELKHRLEKYFTSIANEIEDLKKTNRELEEMIN-EREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEML 299 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 34578888888999999999999999999998 7766 88999999999999999988776653 556
Q ss_pred HHHHhcccchhHHHHHHHHHHHHHHHh-----------------hHhHHHHHhhhhhhhhhhhhhhh------hHHHHHH
Q 007324 335 AEALAAKNSEIETLVSSIDALKKQAAL-----------------SEGNLASLQMNMESIMRNRELTE------TRMIQAL 391 (608)
Q Consensus 335 teALAAKdSqLavL~vrldeadq~l~~-----------------~e~~La~LQ~e~~RImqdh~~~e------~q~lqaL 391 (608)
.+=+..|-++++.|+...++.+.++.. ....|..++.+.+++++.--+.. -..++++
T Consensus 300 ~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~ 379 (581)
T KOG0995|consen 300 KSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKK 379 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 666777777777777777776665432 23334444444444443322221 1223333
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 007324 392 REELASVERRAEEERAAHNATKMAAMEREVELEHR---------------AAEASMALARIQRIADERTAKAGELEQKVA 456 (608)
Q Consensus 392 REeLa~AE~rL~~Eq~ah~Atr~aamERE~elE~q---------------lAeastAL~~~QR~~~E~k~ra~eLeqqv~ 456 (608)
=-.++..-+++..= .+ ++-+.+|+- ..---.-+-.+++.+-++.-+..-||..+.
T Consensus 380 ~~~~~~l~~~i~l~-~~---------~~~~n~~~~pe~~~~~~~d~k~~V~~~l~el~~ei~~~~~~~~~~~~tLq~~~~ 449 (581)
T KOG0995|consen 380 FIDLNSLIRRIKLG-IA---------ENSKNLERNPERAATNGVDLKSYVKPLLKELLDEISEELHEAENELETLQEHFS 449 (581)
T ss_pred HHHHHHHHHHHHHH-HH---------HHhccCCcCCccCccccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444443322 01 111110000 000001122344455555555555666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCC-------Cc-hhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHH
Q 007324 457 MLEVECATLQQELQDMEARLKRGQKK-------SP-EEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEM 528 (608)
Q Consensus 457 ~lea~~esl~QELqDyk~ka~Ril~g-------s~-e~Agqv~qle~~reev~~areq~~~~e~a~qe~~ae~q~~e~El 528 (608)
-.++-.+.++|.|--++-++.-.... .. +--.+-.+++.+.+++..+-- .....+.+....+++.+-|+
T Consensus 450 ~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l---~~~~~m~~a~~~v~s~e~el 526 (581)
T KOG0995|consen 450 NKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKL---VLNTSMKEAEELVKSIELEL 526 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555444332200 00 011122233333333333211 22344555677788889999
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 007324 529 AAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKA 572 (608)
Q Consensus 529 ~~~Kqd~~~~Sr~s~~ELE~RlreLTE~LyqKQTqLEaLatEKa 572 (608)
+++..+...|-..-+.+|..=|.+..+.-..=|..||.+-+.=+
T Consensus 527 ~~~~~~~~eer~ki~~ql~~~i~~i~~~k~~iqs~le~~k~~~~ 570 (581)
T KOG0995|consen 527 DRMVATGEEERQKIAKQLFAVIDQISDFKVSIQSSLENLKADLH 570 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988776667788999999999988888888888765433
No 52
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.80 E-value=4.6 Score=45.77 Aligned_cols=94 Identities=23% Similarity=0.294 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhh----------hhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHhhhhhh
Q 007324 306 SRSYEARIKQLEQELSVYKSEVTKVE----------SNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMES 375 (608)
Q Consensus 306 ~~S~~~r~k~lQ~ELs~ar~~v~k~E----------sdlteALAAKdSqLavL~vrldeadq~l~~~e~~La~LQ~e~~R 375 (608)
-+.+...++.|+.|+..+|..+.+.+ ++.-..|+..++++.-++.++..+.-.+.-......-|..+..+
T Consensus 108 ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~ 187 (546)
T KOG0977|consen 108 RAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELAR 187 (546)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 34455555666666666655555552 33445555666666666665554444443333333333333333
Q ss_pred hhhhhhhh------hhHHHHHHHHHHHHHH
Q 007324 376 IMRNRELT------ETRMIQALREELASVE 399 (608)
Q Consensus 376 Imqdh~~~------e~q~lqaLREeLa~AE 399 (608)
|-.+-.+- -.--+|+|.++|+-..
T Consensus 188 ~r~~ld~Etllr~d~~n~~q~Lleel~f~~ 217 (546)
T KOG0977|consen 188 ARKQLDDETLLRVDLQNRVQTLLEELAFLK 217 (546)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 32211110 1223566777766655
No 53
>PRK03918 chromosome segregation protein; Provisional
Probab=95.73 E-value=5 Score=45.62 Aligned_cols=28 Identities=18% Similarity=0.170 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 007324 544 MELEKRYRELTDLLYYKQTQLETMASEK 571 (608)
Q Consensus 544 ~ELE~RlreLTE~LyqKQTqLEaLatEK 571 (608)
.+|+.+|.++..-+-..+..++.+-.+-
T Consensus 669 ~~l~~~l~~l~~~~~~l~~~i~~l~~~i 696 (880)
T PRK03918 669 LELSRELAGLRAELEELEKRREEIKKTL 696 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444433
No 54
>PRK11281 hypothetical protein; Provisional
Probab=95.69 E-value=7.4 Score=47.35 Aligned_cols=65 Identities=15% Similarity=0.204 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007324 410 NATKMAAMEREVELEHR-AAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEA 474 (608)
Q Consensus 410 ~Atr~aamERE~elE~q-lAeastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ 474 (608)
-.++++...-+.++-++ +.+..+-..-.+-+.+.-+.+...+|+++..+...+..-+++..+...
T Consensus 197 l~ae~~~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~kr~~~se~~~ 262 (1113)
T PRK11281 197 LQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSKRLTLSEKTV 262 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555666666 666665555566666888899999999999998888777666666533
No 55
>PRK11281 hypothetical protein; Provisional
Probab=95.68 E-value=7.4 Score=47.32 Aligned_cols=51 Identities=14% Similarity=0.145 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHhhhhhhhhhhccCC
Q 007324 549 RYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQVCQRVLHSTP 599 (608)
Q Consensus 549 RlreLTE~LyqKQTqLEaLatEKaAl~fQLER~eqq~k~~q~~~~~~~~~~ 599 (608)
.=++|++-|.+=-+.+..+..+-....-+|++..|.++..+.-..+|-.++
T Consensus 286 ~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi~~l~~s~ 336 (1113)
T PRK11281 286 INLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQISVLKGSL 336 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccH
Confidence 357888888888888999999999999999999999998777777776554
No 56
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=95.53 E-value=3.5 Score=47.93 Aligned_cols=173 Identities=24% Similarity=0.321 Sum_probs=106.0
Q ss_pred hhhhhhHhHHH---HHHHHHHHhHHHH-HHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHHHHHHHhh
Q 007324 287 EYKSENAQLEE---LLVAERELSRSYE-ARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALS 362 (608)
Q Consensus 287 ~lr~EN~QLEe---LLr~E~~~~~S~~-~r~k~lQ~ELs~ar~~v~k~EsdlteALAAKdSqLavL~vrldeadq~l~~~ 362 (608)
.+.+|.+||-+ =|-.|++..+.++ +++....+....=+-....+=..|-..|.-++-.++.|...|..+.+-+...
T Consensus 475 dL~~ELqqLReERdRl~aeLqlSa~liqqeV~~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqes 554 (739)
T PF07111_consen 475 DLSLELQQLREERDRLDAELQLSARLIQQEVGRAREQGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQES 554 (739)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 45566663221 2334445555555 3344444332222222222236666777777888888888888888888777
Q ss_pred HhHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007324 363 EGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIAD 442 (608)
Q Consensus 363 e~~La~LQ~e~~RImqdh~~~e~q~lqaLREeLa~AE~rL~~Eq~ah~Atr~aamERE~elE~qlAeastAL~~~QR~~~ 442 (608)
+..-+.|..+..+ . +...-.+|+++.++.|.++ +|+=+..-.|++...|| -+-++-+|--+||++.
T Consensus 555 ~eea~~lR~EL~~---Q----Q~~y~~alqekvsevEsrl-~E~L~~~E~rLNeARRE------HtKaVVsLRQ~qrqa~ 620 (739)
T PF07111_consen 555 TEEAAELRRELTQ---Q----QEVYERALQEKVSEVESRL-REQLSEMEKRLNEARRE------HTKAVVSLRQIQRQAA 620 (739)
T ss_pred HHHHHHHHHHHHH---H----HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Confidence 7777777433222 1 2234458889999999888 55555555566555544 4778999999999999
Q ss_pred HHhhhhhHHHH-HHHHHHHHHHHHHHHHHHHH
Q 007324 443 ERTAKAGELEQ-KVAMLEVECATLQQELQDME 473 (608)
Q Consensus 443 E~k~ra~eLeq-qv~~lea~~esl~QELqDyk 473 (608)
-+|-|-.++-. +=..-+-+..-|+++|++.+
T Consensus 621 reKer~~E~~~lq~e~~~~e~~rl~~rlqele 652 (739)
T PF07111_consen 621 REKERNQELRRLQEEARKEEGQRLTQRLQELE 652 (739)
T ss_pred HhhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98877666532 22334555667777777744
No 57
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=95.52 E-value=1.4 Score=49.82 Aligned_cols=32 Identities=22% Similarity=0.310 Sum_probs=24.9
Q ss_pred chhHHHHHHHHHHHHHHHhhHhHHHHHhhhhh
Q 007324 343 SEIETLVSSIDALKKQAALSEGNLASLQMNME 374 (608)
Q Consensus 343 SqLavL~vrldeadq~l~~~e~~La~LQ~e~~ 374 (608)
..+..|..++++..+.+...+.+|+..+.+..
T Consensus 194 ~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~ 225 (754)
T TIGR01005 194 AAADFLAPEIADLSKQSRDAEAEVAAYRAQSD 225 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34677888888888888888888888876543
No 58
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.45 E-value=3.5 Score=44.29 Aligned_cols=34 Identities=18% Similarity=0.214 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 007324 544 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQ 577 (608)
Q Consensus 544 ~ELE~RlreLTE~LyqKQTqLEaLatEKaAl~fQ 577 (608)
.+|+++..++.+-|-.-...|..+..++..+...
T Consensus 368 ~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke 401 (562)
T PHA02562 368 EELQAEFVDNAEELAKLQDELDKIVKTKSELVKE 401 (562)
T ss_pred HHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444555555555444443
No 59
>PRK03918 chromosome segregation protein; Provisional
Probab=95.07 E-value=8.1 Score=44.00 Aligned_cols=25 Identities=20% Similarity=0.313 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhh
Q 007324 306 SRSYEARIKQLEQELSVYKSEVTKV 330 (608)
Q Consensus 306 ~~S~~~r~k~lQ~ELs~ar~~v~k~ 330 (608)
+.++.+.++.++.++...+.....+
T Consensus 202 ~~~l~~ei~~l~~e~~~l~~~~~~~ 226 (880)
T PRK03918 202 LEEVLREINEISSELPELREELEKL 226 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555554444444
No 60
>PHA02562 46 endonuclease subunit; Provisional
Probab=94.85 E-value=6.9 Score=42.11 Aligned_cols=65 Identities=14% Similarity=0.199 Sum_probs=44.6
Q ss_pred chhHHHHHHHHHHHHHHHhhHhHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007324 343 SEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAA 408 (608)
Q Consensus 343 SqLavL~vrldeadq~l~~~e~~La~LQ~e~~RImqdh~~~e~q~lqaLREeLa~AE~rL~~Eq~a 408 (608)
..++.++..+++....+......+..++.++..|-.+..+- ...|..+..++..++..+..-...
T Consensus 213 ~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~-~~~L~~l~~~~~~~~~~l~~~~~~ 277 (562)
T PHA02562 213 ENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDP-SAALNKLNTAAAKIKSKIEQFQKV 277 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44777777777777777777777777777776665433322 355778888888888877665555
No 61
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=94.79 E-value=0.008 Score=69.35 Aligned_cols=131 Identities=25% Similarity=0.393 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCc--------------hh----HHHHHHHHHHHH
Q 007324 437 IQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSP--------------EE----ANQAIQMQAWQD 498 (608)
Q Consensus 437 ~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka~Ril~gs~--------------e~----Agqv~qle~~re 498 (608)
++.++++..+-+.+|..+..-+..++..|...|.+.+.++......-. ++ ..-..++..+..
T Consensus 192 l~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~ 271 (859)
T PF01576_consen 192 LQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEH 271 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHH
Confidence 444555555555566666666666666666666665555444431100 00 011124456777
Q ss_pred HHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh--hhhh-----HHHHHHHHHHHHHHHHHHHHHHHHh
Q 007324 499 EVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHY--SREE-----HMELEKRYRELTDLLYYKQTQLETM 567 (608)
Q Consensus 499 ev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd~~~~--Sr~s-----~~ELE~RlreLTE~LyqKQTqLEaL 567 (608)
+++.++++..+-..++..+..++.++..||..+|.-++-- .+.. --.|+++|.++.+-|-..+.....|
T Consensus 272 e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~L 347 (859)
T PF01576_consen 272 ELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSL 347 (859)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888777721 2111 1345556666665555554444444
No 62
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=94.76 E-value=6.9 Score=41.72 Aligned_cols=109 Identities=20% Similarity=0.294 Sum_probs=62.5
Q ss_pred hhhhhhhhhhhhhhHhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHHHHH
Q 007324 279 AGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQ 358 (608)
Q Consensus 279 ~~ls~rL~~lr~EN~QLEeLLr~E~~~~~S~~~r~k~lQ~ELs~ar~~v~k~EsdlteALAAKdSqLavL~vrldeadq~ 358 (608)
.++..++..|+.+|-.|.--|-.+...|+.|...++.|.+.--.....++--|.-++-. |-.+|+.+++
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~----------LlKkl~~l~k- 91 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNT----------LLKKLQQLKK- 91 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHH-
Confidence 77888899999999955555555555566666666666655544433333333333332 3333444333
Q ss_pred HHhhHhHHHHHhhhhhhhhhhhhhh-------hhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 007324 359 AALSEGNLASLQMNMESIMRNRELT-------ETRMIQALREELASVERRAEEERAAHNA 411 (608)
Q Consensus 359 l~~~e~~La~LQ~e~~RImqdh~~~-------e~q~lqaLREeLa~AE~rL~~Eq~ah~A 411 (608)
+++.|..+-.-- =.+=|..||.+-.+.|..|+.|++++..
T Consensus 92 -------------eKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~ 138 (310)
T PF09755_consen 92 -------------EKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVN 138 (310)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 333332221111 1344666777777888888888888533
No 63
>PRK10698 phage shock protein PspA; Provisional
Probab=94.68 E-value=5.2 Score=39.93 Aligned_cols=59 Identities=19% Similarity=0.200 Sum_probs=45.9
Q ss_pred hhhhHhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHH
Q 007324 289 KSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIET 347 (608)
Q Consensus 289 r~EN~QLEeLLr~E~~~~~S~~~r~k~lQ~ELs~ar~~v~k~EsdlteALAAKdSqLav 347 (608)
+.=.+++++-|..-...++.+++.-+.++..+......+++|+.----||.+-+-.||-
T Consensus 30 ~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr 88 (222)
T PRK10698 30 RLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLAR 88 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 33344455555555667999999999999999999999999998777777777766653
No 64
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=94.41 E-value=5.5 Score=40.69 Aligned_cols=32 Identities=19% Similarity=0.185 Sum_probs=19.7
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007324 444 RTAKAGELEQKVAMLEVECATLQQELQDMEAR 475 (608)
Q Consensus 444 ~k~ra~eLeqqv~~lea~~esl~QELqDyk~k 475 (608)
...+..+++.++..++..++.++..|..+..+
T Consensus 244 ~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~i~ 275 (423)
T TIGR01843 244 VLEELTEAQARLAELRERLNKARDRLQRLIIR 275 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcEEE
Confidence 33455666667777777777777666654433
No 65
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.12 E-value=0.26 Score=47.42 Aligned_cols=95 Identities=28% Similarity=0.354 Sum_probs=55.6
Q ss_pred HHHHHhhhhhhhhhhhhhhhHhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHH
Q 007324 273 RLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSI 352 (608)
Q Consensus 273 rL~rvc~~ls~rL~~lr~EN~QLEeLLr~E~~~~~S~~~r~k~lQ~ELs~ar~~v~k~EsdlteALAAKdSqLavL~vrl 352 (608)
-+-|.|..+..+|-.+-.+++.|+..+..-...+..+...+..|+.++ .++.+.|..|+.-++.|...|
T Consensus 85 el~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~-----------~~l~~~l~ek~k~~e~l~DE~ 153 (194)
T PF08614_consen 85 ELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKI-----------KDLEEELKEKNKANEILQDEL 153 (194)
T ss_dssp -----------------------------HHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence 345778888999999988998888777766666777777777766666 567788889999999999999
Q ss_pred HHHHHHHHhhHhHHHHHhhhhhhhhh
Q 007324 353 DALKKQAALSEGNLASLQMNMESIMR 378 (608)
Q Consensus 353 deadq~l~~~e~~La~LQ~e~~RImq 378 (608)
.+..-++...++++..|+.|+..|++
T Consensus 154 ~~L~l~~~~~e~k~~~l~~En~~Lv~ 179 (194)
T PF08614_consen 154 QALQLQLNMLEEKLRKLEEENRELVE 179 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987764
No 66
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.12 E-value=0.24 Score=47.64 Aligned_cols=144 Identities=21% Similarity=0.316 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhH---HHHH----HHHHHHHHHHHHHHhHHHHHHhHHHHHHHH
Q 007324 449 GELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEA---NQAI----QMQAWQDEVERARQGQRDAENKLSSLEAEV 521 (608)
Q Consensus 449 ~eLeqqv~~lea~~esl~QELqDyk~ka~Ril~gs~e~A---gqv~----qle~~reev~~areq~~~~e~a~qe~~ae~ 521 (608)
..|-.++..+++....+..+...... +....+++.+. .++- .+-.||+++..++...+.....+-.+-.++
T Consensus 27 ~~L~d~~~~l~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l 104 (194)
T PF08614_consen 27 NRLADRTSLLKAENEQLQPEAESLPS--SSSSSPSESGSVSSAQISSLEQKLAKLQEELAELYRSKGELAQQLVELNDEL 104 (194)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34555666677776666664443332 11111111111 1111 235688899888888888877777777777
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHhhhhhhhhhh
Q 007324 522 QKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQVCQRVL 595 (608)
Q Consensus 522 q~~e~El~~~Kqd~~~~Sr~s~~ELE~RlreLTE~LyqKQTqLEaLatEKaAl~fQLER~eqq~k~~q~~~~~~ 595 (608)
++++.++......+..+ ...-..|+.+++.|.+-|--|...++.|-.|=.+|.+++--++.+++..+.|-.-|
T Consensus 105 ~~l~~~~~~~~~~l~~l-~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~L 177 (194)
T PF08614_consen 105 QELEKELSEKERRLAEL-EAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENREL 177 (194)
T ss_dssp ---------HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777766666643 23467899999999999999999999999999999999999999999999886544
No 67
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=94.06 E-value=14 Score=42.40 Aligned_cols=149 Identities=19% Similarity=0.258 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHH
Q 007324 416 AMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQA 495 (608)
Q Consensus 416 amERE~elE~qlAeastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka~Ril~gs~e~Agqv~qle~ 495 (608)
++.-=++|-.|++|.=.++..+.-.-.+-+.+..--++-.+-+...|..++.+|..++.+... + .+ .+.+
T Consensus 158 AlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~---K-~q------E~~~ 227 (617)
T PF15070_consen 158 ALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLEL---K-SQ------EAQS 227 (617)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---h-hH------HHHH
Confidence 344445688888887777666664444444444433333346777888888888887764321 1 11 2223
Q ss_pred HHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 007324 496 WQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRD---AEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKA 572 (608)
Q Consensus 496 ~reev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd---~~~~Sr~s~~ELE~RlreLTE~LyqKQTqLEaLatEKa 572 (608)
|+.+-+..-.+.....++-+.+..+.+.+-.++-..-|- ++|+-.+....+|.-.++|-++ |..||+++.+--
T Consensus 228 Lq~q~dq~~~~Lqqy~a~~q~l~~e~e~L~~q~l~Qtql~d~lq~eE~q~~~~~E~~~~ELq~~----qe~Lea~~qqNq 303 (617)
T PF15070_consen 228 LQEQRDQYLGHLQQYVAAYQQLASEKEELHKQLLQQTQLMDRLQHEESQGKVQLEMAHQELQEA----QEHLEALSQQNQ 303 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH----HHHHHHHHhhhH
Confidence 333322222222222223344444444444443333332 2233344446666666666554 888888887765
Q ss_pred HHHHHh
Q 007324 573 AAEFQL 578 (608)
Q Consensus 573 Al~fQL 578 (608)
-|.-||
T Consensus 304 qL~~ql 309 (617)
T PF15070_consen 304 QLQAQL 309 (617)
T ss_pred HHHHHH
Confidence 544444
No 68
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=93.41 E-value=7.7 Score=39.61 Aligned_cols=22 Identities=27% Similarity=0.267 Sum_probs=9.9
Q ss_pred HHhhhHHHHHHHHhHHHHHHHh
Q 007324 565 ETMASEKAAAEFQLEKEMNRLQ 586 (608)
Q Consensus 565 EaLatEKaAl~fQLER~eqq~k 586 (608)
..+..+...+..+|+.....+.
T Consensus 249 ~~~~~~l~~~~~~l~~~~~~l~ 270 (423)
T TIGR01843 249 TEAQARLAELRERLNKARDRLQ 270 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444554444443
No 69
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=93.36 E-value=7.7 Score=39.91 Aligned_cols=130 Identities=25% Similarity=0.311 Sum_probs=83.6
Q ss_pred HHHHHhhhhhhhhhhhhhhhHhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHH
Q 007324 273 RLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSI 352 (608)
Q Consensus 273 rL~rvc~~ls~rL~~lr~EN~QLEeLLr~E~~~~~S~~~r~k~lQ~ELs~ar~~v~k~EsdlteALAAKdSqLavL~vrl 352 (608)
||...-.-...-|...+.|..-+-+-|.+=-..+..|...+.+++.++...|.+..+.+..| .-+...-++..|...+
T Consensus 21 rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl--~~v~~~~e~~aL~~E~ 98 (239)
T COG1579 21 RLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL--SAVKDERELRALNIEI 98 (239)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hccccHHHHHHHHHHH
Confidence 44444444444444444444422222222222378889999999999999999999999888 3444556899999999
Q ss_pred HHHHHHHHhhHhHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 007324 353 DALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEE 405 (608)
Q Consensus 353 deadq~l~~~e~~La~LQ~e~~RImqdh~~~e~q~lqaLREeLa~AE~rL~~E 405 (608)
+.|+++..+.+..|..|......|-....+-.. -+..++..+.+++.+++.+
T Consensus 99 ~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~-~~~~~e~~~~e~~~~~e~e 150 (239)
T COG1579 99 QIAKERINSLEDELAELMEEIEKLEKEIEDLKE-RLERLEKNLAEAEARLEEE 150 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 999999999999998887666666544433322 2333444555555554433
No 70
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=93.23 E-value=24 Score=42.44 Aligned_cols=59 Identities=22% Similarity=0.281 Sum_probs=30.1
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-CchhHHHHHHHHHHHHH
Q 007324 437 IQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKK-SPEEANQAIQMQAWQDE 499 (608)
Q Consensus 437 ~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka~Ril~g-s~e~Agqv~qle~~ree 499 (608)
++|....-..|..+..-.+..++.++..+.-++...+-. +.. ..+.++++.+++..-.+
T Consensus 478 ~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~----~~~~~qs~~~~~~~l~~~l~~ 537 (980)
T KOG0980|consen 478 LQRAAGRAETKTESQAKALESLRQELALLLIELEELQRT----LSNLAQSHNNQLAQLEDLLKQ 537 (980)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHHHHh
Confidence 666666555566555555555555555555555443322 222 22445555565444333
No 71
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=92.85 E-value=31 Score=42.74 Aligned_cols=77 Identities=21% Similarity=0.288 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHHHHHHH---hhHhHHHHHhh
Q 007324 295 LEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAA---LSEGNLASLQM 371 (608)
Q Consensus 295 LEeLLr~E~~~~~S~~~r~k~lQ~ELs~ar~~v~k~EsdlteALAAKdSqLavL~vrldeadq~l~---~~e~~La~LQ~ 371 (608)
.++.+..+......+..++.+++++|..++...... +-.+-....+...|+++-..+. .-.++|-.+..
T Consensus 499 ~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~--------~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~ 570 (1317)
T KOG0612|consen 499 VEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNA--------ADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSK 570 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhh
Confidence 444666677777788888888888887663322222 2223344455555554443332 22344444444
Q ss_pred hhhhhhhh
Q 007324 372 NMESIMRN 379 (608)
Q Consensus 372 e~~RImqd 379 (608)
+...-|+.
T Consensus 571 e~~~~iq~ 578 (1317)
T KOG0612|consen 571 ELSKQIQQ 578 (1317)
T ss_pred hhhHHHHH
Confidence 44444433
No 72
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=92.80 E-value=8.7 Score=36.19 Aligned_cols=87 Identities=24% Similarity=0.370 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 007324 388 IQALREELASVERRAEEERAAHNATKMAAMEREV-ELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQ 466 (608)
Q Consensus 388 lqaLREeLa~AE~rL~~Eq~ah~Atr~aamERE~-elE~qlAeastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~ 466 (608)
|+.+.+.|..+...+..-- +..+....+.|-+ -||.++..+-..|..+.-++.+...++..++-+|+.++...+..-
T Consensus 51 ld~~~~~l~~~k~~lee~~--~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E 128 (143)
T PF12718_consen 51 LDKLEEQLKEAKEKLEESE--KRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWE 128 (143)
T ss_pred HHHHHHHHHHHHHHHHhHH--HHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHH
Confidence 5666777777777664332 2223333444433 367888888888999999999999999999999999999998888
Q ss_pred HHHHHHHHHH
Q 007324 467 QELQDMEARL 476 (608)
Q Consensus 467 QELqDyk~ka 476 (608)
..+-.+..+-
T Consensus 129 ~k~eel~~k~ 138 (143)
T PF12718_consen 129 EKYEELEEKY 138 (143)
T ss_pred HHHHHHHHHH
Confidence 8887776654
No 73
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=92.57 E-value=8.3 Score=35.36 Aligned_cols=62 Identities=23% Similarity=0.345 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q 007324 490 AIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTD 555 (608)
Q Consensus 490 v~qle~~reev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd~~~~Sr~s~~ELE~RlreLTE 555 (608)
+-.|..+|.++..++..+..+..........+..++.-....|..++ ..-.+++.|+.+|.+
T Consensus 58 ~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le----~e~~~~~~r~~dL~~ 119 (132)
T PF07926_consen 58 IKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLE----KELSELEQRIEDLNE 119 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 44667778888888877777777777776666666666666666655 235677777777764
No 74
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=92.33 E-value=11 Score=36.41 Aligned_cols=77 Identities=27% Similarity=0.256 Sum_probs=54.4
Q ss_pred HhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhH-HHHHHHHHHHHHHHhhHhHHHHH
Q 007324 293 AQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIE-TLVSSIDALKKQAALSEGNLASL 369 (608)
Q Consensus 293 ~QLEeLLr~E~~~~~S~~~r~k~lQ~ELs~ar~~v~k~EsdlteALAAKdSqLa-vL~vrldeadq~l~~~e~~La~L 369 (608)
..+++-|..-...++.+.+.-+.++.++..+...+.+|+..--.||.+-+-.|| ..-.+...+...+......++.+
T Consensus 33 rd~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~ 110 (221)
T PF04012_consen 33 RDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQA 110 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555556689999999999999999999999999888888888877776 33334444444444444444444
No 75
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=92.31 E-value=0.38 Score=54.46 Aligned_cols=245 Identities=20% Similarity=0.276 Sum_probs=23.1
Q ss_pred HHHHHhhhhhhhhhhhhhhhHhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhh-------hhhhh-------------h
Q 007324 273 RLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSE-------VTKVE-------------S 332 (608)
Q Consensus 273 rL~rvc~~ls~rL~~lr~EN~QLEeLLr~E~~~~~S~~~r~k~lQ~ELs~ar~~-------v~k~E-------------s 332 (608)
.|-+.+..+..+|..||.-+.- =++|..|+..+..=..+...++.+|..++.+ ...|. .
T Consensus 261 ~LE~en~~l~~Elk~Lr~~~~n-~elLeEe~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~sW~sl~~~~~~~~~sPe 339 (722)
T PF05557_consen 261 ELEKENRRLREELKHLRQSQEN-VELLEEEKRSLQRKLERLEELEEELAELQLENEKLEDELNSWESLLQDIGLEFDSPE 339 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHH
Confidence 3444455555555555443221 1245555554444344444445555554444 44452 2
Q ss_pred hHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHhhhhhhhhhhhhhhh--hHHHHHHHHHHHHHHHHHHHHHHHhH
Q 007324 333 NLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTE--TRMIQALREELASVERRAEEERAAHN 410 (608)
Q Consensus 333 dlteALAAKdSqLavL~vrldeadq~l~~~e~~La~LQ~e~~RImqdh~~~e--~q~lqaLREeLa~AE~rL~~Eq~ah~ 410 (608)
++..+|..-.-.-++|..++....-.+..++..+..|+.++..+......-. ......+..||-.--.-+-+|++.-.
T Consensus 340 ~l~~~l~~lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR 419 (722)
T PF05557_consen 340 DLARALVQLQQENASLTEKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLR 419 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555556666667777776777777777777666665544333322 11122222222222222223333311
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhccCCCc--
Q 007324 411 ATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEV----ECATLQQELQDMEARLKRGQKKSP-- 484 (608)
Q Consensus 411 Atr~aamERE~elE~qlAeastAL~~~QR~~~E~k~ra~eLeqqv~~lea----~~esl~QELqDyk~ka~Ril~gs~-- 484 (608)
..+.... -|-......+ ....+..++.+|.+.+..... .+..+..+|..|+..+.+.-....
T Consensus 420 -~~L~syd----~e~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~ele~~l~~l~~~l~~~k~~~~~~~~e~~~~ 487 (722)
T PF05557_consen 420 -AQLKSYD----KEETTMNPSE-------QDTQRIKEIEDLEQLVDEYKAELEAQLEELEEELSEQKQRNETLEAELKSL 487 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -HHHHHhh----hhhccccCch-------hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhhhhh
Confidence 1111111 1111000010 112333445666665555333 445577777777765443221111
Q ss_pred -hhHHHH-HHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHH
Q 007324 485 -EEANQA-IQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAA 530 (608)
Q Consensus 485 -e~Agqv-~qle~~reev~~areq~~~~e~a~qe~~ae~q~~e~El~~ 530 (608)
...+.. ..+....+++..++..+..++..+..++.+...++.+|+.
T Consensus 488 ~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 488 KEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELEELESELEK 535 (722)
T ss_dssp ------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 0011234455556666666666666666666666777665
No 76
>PRK04863 mukB cell division protein MukB; Provisional
Probab=92.09 E-value=42 Score=42.37 Aligned_cols=25 Identities=20% Similarity=0.080 Sum_probs=14.3
Q ss_pred HHHHHhhhHHHHHHHHhHHHHHHHh
Q 007324 562 TQLETMASEKAAAEFQLEKEMNRLQ 586 (608)
Q Consensus 562 TqLEaLatEKaAl~fQLER~eqq~k 586 (608)
.+|++++.+=-..+-.|+++-.|..
T Consensus 596 ~~l~~~ap~W~~a~~al~~L~eq~g 620 (1486)
T PRK04863 596 QRLAARAPAWLAAQDALARLREQSG 620 (1486)
T ss_pred HHHHHhChHHHhhHHHHHHHHHhcc
Confidence 3456666666666666666555443
No 77
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=91.91 E-value=27 Score=39.88 Aligned_cols=188 Identities=23% Similarity=0.282 Sum_probs=104.0
Q ss_pred hhhhHhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHH
Q 007324 289 KSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLAS 368 (608)
Q Consensus 289 r~EN~QLEeLLr~E~~~~~S~~~r~k~lQ~ELs~ar~~v~k~EsdlteALAAKdSqLavL~vrldeadq~l~~~e~~La~ 368 (608)
|-|.++|-+=|..=++.+..|+++-..|+-+++..|..+-+= .+.--+.-+++|..+..-+++..+.....+-.+--
T Consensus 41 K~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~---ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~k 117 (546)
T KOG0977|consen 41 KKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRE---TSGIKAKYEAELATARKLLDETARERAKLEIEITK 117 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---CcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888889999999999999999998887655432 11111222344444444444444433333333333
Q ss_pred HhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Q 007324 369 LQMNMESIMRNRELTETRMIQALREELASVERRAEEERA--AHNATKMAAMEREV-ELEHRAAEASMALARIQRIADERT 445 (608)
Q Consensus 369 LQ~e~~RImqdh~~~e~q~lqaLREeLa~AE~rL~~Eq~--ah~Atr~aamERE~-elE~qlAeastAL~~~QR~~~E~k 445 (608)
|+.+..-+...-... .+-+..-|+++...+.+|-.=.. +++-.|..+|+-+. +|=.+..-.-..|.++-..+++++
T Consensus 118 l~~e~~elr~~~~~~-~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Et 196 (546)
T KOG0977|consen 118 LREELKELRKKLEKA-EKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDET 196 (546)
T ss_pred hHHHHHHHHHHHHHH-HHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 322222221111111 11222233333333333311111 13445555555433 233334445556666777778888
Q ss_pred hhhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhcc
Q 007324 446 AKAGELEQKVAMLEVECATLQ----QELQDMEARLKRGQ 480 (608)
Q Consensus 446 ~ra~eLeqqv~~lea~~esl~----QELqDyk~ka~Ril 480 (608)
----+++-++..|..+|+-+. +|+.+-..++.|-.
T Consensus 197 llr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~ 235 (546)
T KOG0977|consen 197 LLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDT 235 (546)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc
Confidence 777788888888888888887 77777777766665
No 78
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=91.89 E-value=31 Score=40.53 Aligned_cols=302 Identities=21% Similarity=0.300 Sum_probs=181.4
Q ss_pred hhhhhhhhhhhhhHhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhh--h-hhHHHHHhcccchhHHHH---HHHH
Q 007324 280 GLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKV--E-SNLAEALAAKNSEIETLV---SSID 353 (608)
Q Consensus 280 ~ls~rL~~lr~EN~QLEeLLr~E~~~~~S~~~r~k~lQ~ELs~ar~~v~k~--E-sdlteALAAKdSqLavL~---vrld 353 (608)
++++.|++.+.||..|--+...-...+..++...+.|..|+..++.|=.+. | ++|-|=.-.=.-++.+|+ |.++
T Consensus 45 ~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQvefE 124 (717)
T PF09730_consen 45 QLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQVEFE 124 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 567778888888988887777777778888889999999999998888887 2 445555555555666665 5677
Q ss_pred HHHHHHHhhHhHHHHHhhhhhhhhhhhhhhh---hHHHHHHHHHHHHHHHHHHHHHHHh-----------HHH-------
Q 007324 354 ALKKQAALSEGNLASLQMNMESIMRNRELTE---TRMIQALREELASVERRAEEERAAH-----------NAT------- 412 (608)
Q Consensus 354 eadq~l~~~e~~La~LQ~e~~RImqdh~~~e---~q~lqaLREeLa~AE~rL~~Eq~ah-----------~At------- 412 (608)
.++..+..+++-.+-|.+..+-+++=+...+ ..||++|+.+ ++..-.|++|-..| .+.
T Consensus 125 ~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~E-Reqk~~LrkEL~~~~~~~~~~~~~~~~~~~~~~~~ 203 (717)
T PF09730_consen 125 GLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSE-REQKNALRKELDQHLNIESISYLSNLAISLDGLKF 203 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCccccccccchhhccccccc
Confidence 7777777777777777777766666665555 4455555554 34555666666554 000
Q ss_pred --------------------------------------------------------------HHHHHHHH-HHHHHHHHH
Q 007324 413 --------------------------------------------------------------KMAAMERE-VELEHRAAE 429 (608)
Q Consensus 413 --------------------------------------------------------------r~aamERE-~elE~qlAe 429 (608)
-+.+++.| .-+|+.-+.
T Consensus 204 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lv~DLfSEl~~~EiqKL~qQL~qve~EK~~ 283 (717)
T PF09730_consen 204 SEDPRAATEPNNDDEEENGGLNGGPGLAKGNGDNRMSTPRKSESFSPAPSLVSDLFSELNLSEIQKLKQQLLQVEREKSS 283 (717)
T ss_pred ccccccccCCCCchhhhcchhhccchhcccccccccCCCCCCCCCCCCCcccchhhhhcchHHHHHHHHHHHHHhhHHHH
Confidence 00111110 012333445
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhhccCCCchhH-----------------
Q 007324 430 ASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQ-----ELQDMEARLKRGQKKSPEEA----------------- 487 (608)
Q Consensus 430 astAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~Q-----ELqDyk~ka~Ril~gs~e~A----------------- 487 (608)
.+..|--.|+.++-.+.-..+.+.++..|...+.+++. +.+++...-. . .++....
T Consensus 284 L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~~~-~-~~s~~d~~~ye~Di~~~eiLe~Ky 361 (717)
T PF09730_consen 284 LLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQSAEDSEK-E-RDSHEDGDYYEVDINGLEILECKY 361 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhccc-c-cccccccchhhhccccHHHHHHHH
Confidence 66677777777777777777777777777777777765 2222111000 0 0111110
Q ss_pred -HHHHHHHHHHHHHHHHHHhHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 007324 488 -NQAIQMQAWQDEVERARQGQRDAENKLSS----LEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQT 562 (608)
Q Consensus 488 -gqv~qle~~reev~~areq~~~~e~a~qe----~~ae~q~~e~El~~~Kqd~~~~Sr~s~~ELE~RlreLTE~LyqKQT 562 (608)
..+.+...|+.++..++..+......-.. .+.+++.+...+..+.+..+. .+.--.+||+.||.++.+--..|+
T Consensus 362 ~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re-~qeri~~LE~ELr~l~~~A~E~q~ 440 (717)
T PF09730_consen 362 KVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSRE-DQERISELEKELRALSKLAGESQG 440 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHhHHH
Confidence 11223466888888887766665553222 233334444444444333332 122348999999999999999999
Q ss_pred HHHHhhhHHHHHHHHhHHHHHHH
Q 007324 563 QLETMASEKAAAEFQLEKEMNRL 585 (608)
Q Consensus 563 qLEaLatEKaAl~fQLER~eqq~ 585 (608)
.|-..-.|=.+.--.|-.+-..+
T Consensus 441 ~LnsAQDELvtfSEeLAqLYHHV 463 (717)
T PF09730_consen 441 SLNSAQDELVTFSEELAQLYHHV 463 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777766666555554444433
No 79
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=91.88 E-value=17 Score=37.47 Aligned_cols=99 Identities=22% Similarity=0.353 Sum_probs=46.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHH
Q 007324 437 IQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSS 516 (608)
Q Consensus 437 ~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka~Ril~gs~e~Agqv~qle~~reev~~areq~~~~e~a~qe 516 (608)
++--.+.-+++.-+++..+..++-++-.+..+++++..+-.++..+-+ ++--.-++.++..+++.+.+.+..++..+..
T Consensus 36 ~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~-~v~~~~e~~aL~~E~~~ak~r~~~le~el~~ 114 (239)
T COG1579 36 AKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLS-AVKDERELRALNIEIQIAKERINSLEDELAE 114 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444444455554444444443321 1111113445555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 007324 517 LEAEVQKMRVEMAAMKRDAE 536 (608)
Q Consensus 517 ~~ae~q~~e~El~~~Kqd~~ 536 (608)
+..++++++.++..++..+.
T Consensus 115 l~~~~~~l~~~i~~l~~~~~ 134 (239)
T COG1579 115 LMEEIEKLEKEIEDLKERLE 134 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555555544444443
No 80
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=91.83 E-value=14 Score=36.53 Aligned_cols=131 Identities=19% Similarity=0.234 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHH
Q 007324 423 LEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVER 502 (608)
Q Consensus 423 lE~qlAeastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka~Ril~gs~e~Agqv~qle~~reev~~ 502 (608)
||.++......|...++.+.+...+...++..-..+-..+..+++.|+.....-.-..+++....+ -.+.-.|+-++..
T Consensus 83 Leq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~-~a~~~~l~ae~~~ 161 (240)
T PF12795_consen 83 LEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLS-EAQRWLLQAELAA 161 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhh-HHHHHHHHHHHHH
Confidence 888888888899999999999999999999888889999999999998877765544333321111 1122233334444
Q ss_pred HHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 007324 503 ARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQT 562 (608)
Q Consensus 503 areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd~~~~Sr~s~~ELE~RlreLTE~LyqKQT 562 (608)
+.-++...+..+... -.+.+|.++++|+- ..-+..|+.++..|-+.|..|--
T Consensus 162 l~~~~~~le~el~s~-----~~rq~L~~~qrdl~---~~~~~~l~~~l~~Lq~~ln~~R~ 213 (240)
T PF12795_consen 162 LEAQIEMLEQELLSN-----NNRQELLQLQRDLL---KARIQRLQQQLQALQNLLNQKRR 213 (240)
T ss_pred HHHHHHHHHHHHHCc-----HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444333333332 34677778887775 44567788888888888887743
No 81
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=91.64 E-value=29 Score=39.57 Aligned_cols=196 Identities=17% Similarity=0.154 Sum_probs=90.6
Q ss_pred HHHhhhhhhhhhhhhhhhHhHHHHHHHHHHH--------hHHHHHHHHHHHHHHhhhhhhhhhhh---hhHHHHHhcccc
Q 007324 275 ARVCAGLSSRLQEYKSENAQLEELLVAEREL--------SRSYEARIKQLEQELSVYKSEVTKVE---SNLAEALAAKNS 343 (608)
Q Consensus 275 ~rvc~~ls~rL~~lr~EN~QLEeLLr~E~~~--------~~S~~~r~k~lQ~ELs~ar~~v~k~E---sdlteALAAKdS 343 (608)
.+...-|..+|.++|.+.++.|.-|..=... ..-..+++.++...|..++.+....+ +.+-..+....+
T Consensus 193 ~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~~~~ 272 (754)
T TIGR01005 193 TAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSVKKALQNGGS 272 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3445555556666655555444433322221 11123667777777777666555443 222223322111
Q ss_pred hh---HHHHHHHHHHHHHHHhhHhHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHH----HHHH
Q 007324 344 EI---ETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNAT----KMAA 416 (608)
Q Consensus 344 qL---avL~vrldeadq~l~~~e~~La~LQ~e~~RImqdh~~~e~q~lqaLREeLa~AE~rL~~Eq~ah~At----r~aa 416 (608)
.. .++... ...+..+.....++..++.+...+...-.+. .-.|..|+.++.+.+..+..|...--.+ --.+
T Consensus 273 ~~~~~~~~~~~-~~~~~~i~~L~~~l~~l~~~~~~l~~~y~~~-hP~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a 350 (754)
T TIGR01005 273 LDVLPEVLSSQ-LKLEDLIQRLRERQAELRATIADLSTTMLAN-HPRVVAAKSSLADLDAQIRSELQKITKSLLMQADAA 350 (754)
T ss_pred ccchhhhhcCc-ccccHHHHHHHHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 011000 0011233333444444444444333332222 2346778888888888887765542111 1122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007324 417 MEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARL 476 (608)
Q Consensus 417 mERE~elE~qlAeastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka 476 (608)
-.|+..|+.++++.-.- -..+-.......+|+.++...+...+.+-+.+...+...
T Consensus 351 ~~~~~~L~~~l~~~~~~----~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~~~ 406 (754)
T TIGR01005 351 QARESQLVSDVNQLKAA----SAQAGEQQVDLDALQRDAAAKRQLYESYLTNYRQAASRQ 406 (754)
T ss_pred HHHHHHHHHHHHHHHHH----HHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22333343333332211 112223344556677777777777777777776655443
No 82
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=91.55 E-value=41 Score=41.20 Aligned_cols=205 Identities=18% Similarity=0.281 Sum_probs=112.6
Q ss_pred HHHhhhhhhhhhhhhhhhHhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHH---HHhcccchhHHHHHH
Q 007324 275 ARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAE---ALAAKNSEIETLVSS 351 (608)
Q Consensus 275 ~rvc~~ls~rL~~lr~EN~QLEeLLr~E~~~~~S~~~r~k~lQ~ELs~ar~~v~k~Esdlte---ALAAKdSqLavL~vr 351 (608)
..++..+..+|.+++-+..-+++.|.+ ..-...+..++.+|..++.=+ .|.-.+.+|.. =+--+.-....|..+
T Consensus 227 ~~~i~~~~e~i~~l~k~i~e~~e~~~~-~~~~e~~~~~l~~Lk~k~~W~--~V~~~~~ql~~~~~~i~~~qek~~~l~~k 303 (1074)
T KOG0250|consen 227 KELIDLKEEEIKNLKKKIKEEEEKLDN-LEQLEDLKENLEQLKAKMAWA--WVNEVERQLNNQEEEIKKKQEKVDTLQEK 303 (1074)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666655555542 111233344455555555332 23333333322 222233333344444
Q ss_pred HHHHHHHHHhhHhHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHH-HHHHHHH
Q 007324 352 IDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAA--HNATKMAAMEREV-ELEHRAA 428 (608)
Q Consensus 352 ldeadq~l~~~e~~La~LQ~e~~RImqdh~~~e~q~lqaLREeLa~AE~rL~~Eq~a--h~Atr~aamERE~-elE~qlA 428 (608)
++.........+..|-+.+.....|+... +.+..=++.+|+.+..+-+..-...+- |.-..+.+..++. .+|.+++
T Consensus 304 i~~~~~k~~~~r~k~teiea~i~~~~~e~-~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~ 382 (1074)
T KOG0250|consen 304 IEEKQGKIEEARQKLTEIEAKIGELKDEV-DAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIA 382 (1074)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444445555555554332 223333455555555554433222222 2222233322222 2777777
Q ss_pred HHHHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 007324 429 EASMAL-ARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKS 483 (608)
Q Consensus 429 eastAL-~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka~Ril~gs 483 (608)
..=.-+ ..++-...+.-.+...|+++|..++....+|+.++.+...+++.+.+.-
T Consensus 383 ~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~ 438 (1074)
T KOG0250|consen 383 DLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEK 438 (1074)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 666555 6678888899999999999999999999999999999999999876543
No 83
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.11 E-value=41 Score=40.40 Aligned_cols=98 Identities=21% Similarity=0.240 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHh
Q 007324 427 AAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQG 506 (608)
Q Consensus 427 lAeastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka~Ril~gs~e~Agqv~qle~~reev~~areq 506 (608)
.+++-+-.-+-|.-.--.+.|-..|++.+..|--.+..|-+.|+|...+.+-.- -.-++.. -+.+--..+++.++..
T Consensus 418 ~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~k-t~ie~~~--~q~e~~isei~qlqar 494 (1118)
T KOG1029|consen 418 RQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQK-TEIEEVT--KQRELMISEIDQLQAR 494 (1118)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHH-HHHHHhh--hHHHHHHHHHHHHHHH
Confidence 555554433333333334455555555544444444444444444333221100 0001110 0223334455555555
Q ss_pred HHHHHHhHHHHHHHHHHHHHH
Q 007324 507 QRDAENKLSSLEAEVQKMRVE 527 (608)
Q Consensus 507 ~~~~e~a~qe~~ae~q~~e~E 527 (608)
+.+....++.+.-|.|.+..-
T Consensus 495 ikE~q~kl~~l~~Ekq~l~~q 515 (1118)
T KOG1029|consen 495 IKELQEKLQKLAPEKQELNHQ 515 (1118)
T ss_pred HHHHHHHHHhhhhHHHHHHHH
Confidence 555555555555555554443
No 84
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=91.08 E-value=14 Score=34.87 Aligned_cols=34 Identities=24% Similarity=0.397 Sum_probs=25.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 007324 446 AKAGELEQKVAMLEVECATLQQELQDMEARLKRG 479 (608)
Q Consensus 446 ~ra~eLeqqv~~lea~~esl~QELqDyk~ka~Ri 479 (608)
..+..|+.++..++..++.+...|.+++.++.-.
T Consensus 35 ~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~ 68 (143)
T PF12718_consen 35 QEITSLQKKNQQLEEELDKLEEQLKEAKEKLEES 68 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4566677777778888888888888887776543
No 85
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=90.94 E-value=30 Score=38.47 Aligned_cols=186 Identities=18% Similarity=0.150 Sum_probs=96.9
Q ss_pred hhhhhhhhhhhhhhhHhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccch-----hHHHHH--
Q 007324 278 CAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSE-----IETLVS-- 350 (608)
Q Consensus 278 c~~ls~rL~~lr~EN~QLEeLLr~E~~~~~S~~~r~k~lQ~ELs~ar~~v~k~EsdlteALAAKdSq-----LavL~v-- 350 (608)
..+|.+.|..++.++.+++.-|+.=......+.+.|..+...|+..+.+-..--.-|++.|+|-.-. ++.|..
T Consensus 61 ~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L~A~~r~g~~p~~~ll~~~e 140 (420)
T COG4942 61 RAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQRSGRNPPPALLVSPE 140 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhhcChh
Confidence 3455555666666666666555543333444555555555555554333322235566666654321 111111
Q ss_pred HHHHHHHHHHhhHhHHHHHhhhhhhhhhhhhhh--hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 007324 351 SIDALKKQAALSEGNLASLQMNMESIMRNRELT--ETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAA 428 (608)
Q Consensus 351 rldeadq~l~~~e~~La~LQ~e~~RImqdh~~~--e~q~lqaLREeLa~AE~rL~~Eq~ah~Atr~aamERE~elE~qlA 428 (608)
.-+.+.+.+.......-++..-+..|-.+...- ..+.+.+=|++|..+......++..-.-.+.+.-. ++.++.
T Consensus 141 da~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk----~~~~l~ 216 (420)
T COG4942 141 DAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKK----TLAQLN 216 (420)
T ss_pred hhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 111223333333333333333344443333332 46677777777777777766555443333333333 444444
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 007324 429 EASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQ 470 (608)
Q Consensus 429 eastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELq 470 (608)
....+ -+.++.+-......|...+..++...++.+-.-.
T Consensus 217 ~~l~~---~q~~l~eL~~~~~~L~~~Ias~e~~aA~~re~~a 255 (420)
T COG4942 217 SELSA---DQKKLEELRANESRLKNEIASAEAAAAKAREAAA 255 (420)
T ss_pred HHHHH---HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43333 7888888889999999999888877665544443
No 86
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=90.80 E-value=26 Score=37.62 Aligned_cols=27 Identities=15% Similarity=0.221 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHHHhhHhHHHHHhh
Q 007324 345 IETLVSSIDALKKQAALSEGNLASLQM 371 (608)
Q Consensus 345 LavL~vrldeadq~l~~~e~~La~LQ~ 371 (608)
++.|..++..+++.+...+.+|...+.
T Consensus 163 ~~fl~~ql~~~~~~L~~ae~~l~~f~~ 189 (498)
T TIGR03007 163 QRFIDEQIKTYEKKLEAAENRLKAFKQ 189 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555543
No 87
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=90.72 E-value=37 Score=39.16 Aligned_cols=53 Identities=28% Similarity=0.338 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007324 423 LEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEAR 475 (608)
Q Consensus 423 lE~qlAeastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~k 475 (608)
|=-.=++-+.+|..-+....+=.+++.+++.++..++..|+.-.+|++.....
T Consensus 179 ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q 231 (617)
T PF15070_consen 179 LTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQ 231 (617)
T ss_pred HHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 33334455667777777777888888888888888888888877777776553
No 88
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=90.72 E-value=17 Score=37.67 Aligned_cols=135 Identities=15% Similarity=0.164 Sum_probs=75.7
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHH-HHHHHHHHHHHHHHhHHHHHHhHHHHHHHHH
Q 007324 444 RTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAI-QMQAWQDEVERARQGQRDAENKLSSLEAEVQ 522 (608)
Q Consensus 444 ~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka~Ril~gs~e~Agqv~-qle~~reev~~areq~~~~e~a~qe~~ae~q 522 (608)
.+....-+++++..++..+..+.+.|.+|+.+..-+- +...+.... .+..++.++..++.+.+....-...---++.
T Consensus 168 ~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d--~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~ 245 (362)
T TIGR01010 168 RKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFD--PKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVP 245 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchH
Confidence 3455677899999999999999999999998865442 222222111 2223333333333222222110000001111
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH----H----HHHHHHHHHHHhhhHHHHHHHHhHHHHHHHhhhhhhhhh
Q 007324 523 KMRVEMAAMKRDAEHYSREEHMELEKRYRELT----D----LLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQVCQRV 594 (608)
Q Consensus 523 ~~e~El~~~Kqd~~~~Sr~s~~ELE~RlreLT----E----~LyqKQTqLEaLatEKaAl~fQLER~eqq~k~~q~~~~~ 594 (608)
.++.++ ..|++++.+.. . .|-.+..+++.|-.|.....-.++....++.++..+...
T Consensus 246 ~l~~~i---------------~~l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~~~~~~ 310 (362)
T TIGR01010 246 SLQARI---------------KSLRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQQQLKAALTSLQQTRVEADR 310 (362)
T ss_pred HHHHHH---------------HHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 122222 22222222211 1 345667789999999999999999999999999988654
Q ss_pred h
Q 007324 595 L 595 (608)
Q Consensus 595 ~ 595 (608)
-
T Consensus 311 ~ 311 (362)
T TIGR01010 311 Q 311 (362)
T ss_pred h
Confidence 3
No 89
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=90.46 E-value=14 Score=33.89 Aligned_cols=118 Identities=16% Similarity=0.190 Sum_probs=73.5
Q ss_pred cccchhHHHHHHHHHHHHHHHhhHhHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 007324 340 AKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMER 419 (608)
Q Consensus 340 AKdSqLavL~vrldeadq~l~~~e~~La~LQ~e~~RImqdh~~~e~q~lqaLREeLa~AE~rL~~Eq~ah~Atr~aamER 419 (608)
..+..++.....+..+..-+..........|..-+|=|..|... ...|.+||+++......+..=+..-..++-.--.
T Consensus 14 ~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~-~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~- 91 (132)
T PF07926_consen 14 RLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAED-IKELQQLREELQELQQEINELKAEAESAKAELEE- 91 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 33444555555666666666666677777777788878888777 8889999999988876654333222222222211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 007324 420 EVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATL 465 (608)
Q Consensus 420 E~elE~qlAeastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl 465 (608)
.-..-..-=..++..+.+-+.|+++|..|=..|=-.++++
T Consensus 92 ------~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 92 ------SEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred ------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 1111111122366777777888888888888877766654
No 90
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=90.38 E-value=66 Score=41.54 Aligned_cols=202 Identities=20% Similarity=0.301 Sum_probs=110.9
Q ss_pred hHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHhhhhhhhhhhhhhhh--hHHHHHHHHHHHHHHHHHHHHHHHhH
Q 007324 333 NLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTE--TRMIQALREELASVERRAEEERAAHN 410 (608)
Q Consensus 333 dlteALAAKdSqLavL~vrldeadq~l~~~e~~La~LQ~e~~RImqdh~~~e--~q~lqaLREeLa~AE~rL~~Eq~ah~ 410 (608)
.|+.-|.+.++.++.|...+...++.=..+...=..|..+.+.|......-+ .--||++...+-.-+...+.-.++|
T Consensus 728 ~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~- 806 (1822)
T KOG4674|consen 728 TLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESR- 806 (1822)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 5666677777888888888887777755555444444444444433222111 1113333333332222222211111
Q ss_pred HHHHHHHHHHH--------HHHHHHHHHHH----HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007324 411 ATKMAAMEREV--------ELEHRAAEASM----ALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKR 478 (608)
Q Consensus 411 Atr~aamERE~--------elE~qlAeast----AL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka~R 478 (608)
.-..+|+. +-.+.+.+.+. -|--+++.+++.....+.+-..+..+.-+.+.+.+++.+++-+..-
T Consensus 807 ---i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~ 883 (1822)
T KOG4674|consen 807 ---IKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKS 883 (1822)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111110 00011111111 2334566666777777777777777777777777777776654432
Q ss_pred cc-----CCCc---hhHHHHH-HHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007324 479 GQ-----KKSP---EEANQAI-QMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHY 538 (608)
Q Consensus 479 il-----~gs~---e~Agqv~-qle~~reev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd~~~~ 538 (608)
.. -+++ ..+.... .|+...+++.+++.+...+...+.++.+....++.=+..++..++-|
T Consensus 884 ~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~ 952 (1822)
T KOG4674|consen 884 AKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDET 952 (1822)
T ss_pred hHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 2222 2222222 45667777888888888888888888888888888888888888844
No 91
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=90.33 E-value=0.082 Score=59.59 Aligned_cols=88 Identities=16% Similarity=0.273 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhh-----------------------hhhHHHHHHHH
Q 007324 494 QAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYS-----------------------REEHMELEKRY 550 (608)
Q Consensus 494 e~~reev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd~~~~S-----------------------r~s~~ELE~Rl 550 (608)
+.|.+++..++..+..++. +++++..++++...+..++.-|. +..+.-|-.++
T Consensus 284 elLeEe~~sLq~kl~~~E~----~~~el~~lq~e~~~Le~el~sW~sl~~~~~~~~~sPe~l~~~l~~lq~~~~~L~ek~ 359 (722)
T PF05557_consen 284 ELLEEEKRSLQRKLERLEE----LEEELAELQLENEKLEDELNSWESLLQDIGLEFDSPEDLARALVQLQQENASLTEKL 359 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666555443 44555666666666666665331 11222333333
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHH
Q 007324 551 RELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRL 585 (608)
Q Consensus 551 reLTE~LyqKQTqLEaLatEKaAl~fQLER~eqq~ 585 (608)
-.++-.+-...+.+..|..|++-+.-+++.+...+
T Consensus 360 g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~ 394 (722)
T PF05557_consen 360 GSLQSELRELEEEIQELEQEKEQLLKEIEELEASL 394 (722)
T ss_dssp -----------------------------------
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555566666666665555555544443
No 92
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=90.31 E-value=53 Score=40.32 Aligned_cols=209 Identities=19% Similarity=0.292 Sum_probs=112.3
Q ss_pred CCcchhhhHHHHhhHHHhhhhcchhhHHHHHHHhhhhhhhhhhhhhhhHhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 007324 245 PPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYK 324 (608)
Q Consensus 245 sp~K~qdql~ea~~ll~~~~~~g~ske~rL~rvc~~ls~rL~~lr~EN~QLEeLLr~E~~~~~S~~~r~k~lQ~ELs~ar 324 (608)
-|+-+-.| |-|+..|.+.-..-.-| .--..+-|++++.-+.-..+.|.+-.+.+.-....++.+..++..++
T Consensus 177 NP~~~lsQ-D~aR~FL~~~~p~dkYk-------lfmkaT~L~qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~ 248 (1074)
T KOG0250|consen 177 NPMFVLSQ-DAARSFLANSNPKDKYK-------LFMKATQLEQITESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEE 248 (1074)
T ss_pred CcchhhcH-HHHHHHHhcCChHHHHH-------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 35554444 55777776533222211 11234567777766666666777666666666666666666665443
Q ss_pred hhhhhhhhhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 007324 325 SEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEE 404 (608)
Q Consensus 325 ~~v~k~EsdlteALAAKdSqLavL~vrldeadq~l~~~e~~La~LQ~e~~RImqdh~~~e~q~lqaLREeLa~AE~rL~~ 404 (608)
-...-.+ -+-...-.+.-|+.+|- |. .+.-.+..|..+..+..- --.-+.+|.+++.....+.+.
T Consensus 249 e~~~~~~-----~~e~~~~~l~~Lk~k~~-W~-~V~~~~~ql~~~~~~i~~--------~qek~~~l~~ki~~~~~k~~~ 313 (1074)
T KOG0250|consen 249 EKLDNLE-----QLEDLKENLEQLKAKMA-WA-WVNEVERQLNNQEEEIKK--------KQEKVDTLQEKIEEKQGKIEE 313 (1074)
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Confidence 2222211 11111112222222221 10 111122222222111111 122345555555555555544
Q ss_pred HHHH--hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007324 405 ERAA--HNATKMAAMEREVELEHR-AAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARL 476 (608)
Q Consensus 405 Eq~a--h~Atr~aamERE~elE~q-lAeastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka 476 (608)
.+.. ..-++....-.|++.=-. +.++-..|...-|.+.+-+....+.+..+..++..++-++-.+.|++..-
T Consensus 314 ~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~ 388 (1074)
T KOG0250|consen 314 ARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQT 388 (1074)
T ss_pred HhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4432 233444444444444333 77778888888888999999999999999999999999999999988776
No 93
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=90.16 E-value=12 Score=39.03 Aligned_cols=123 Identities=29% Similarity=0.352 Sum_probs=82.4
Q ss_pred HHHHhhhhhhhhhhhhhhhHhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHHH
Q 007324 274 LARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSID 353 (608)
Q Consensus 274 L~rvc~~ls~rL~~lr~EN~QLEeLLr~E~~~~~S~~~r~k~lQ~ELs~ar~~v~k~EsdlteALAAKdSqLavL~vrld 353 (608)
+--++.+|-..+..++.+.+.|...+..-...+-.+..+-..|..++...+..+...++ .-..+|+.++.+|.
T Consensus 147 l~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~-------~D~~eL~~lr~eL~ 219 (325)
T PF08317_consen 147 LEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIES-------CDQEELEALRQELA 219 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-------cCHHHHHHHHHHHH
Confidence 45567777788888888888666666655556777777777788888776655544321 22356667777777
Q ss_pred HHHHHHHhhHhHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 007324 354 ALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEE 404 (608)
Q Consensus 354 eadq~l~~~e~~La~LQ~e~~RImqdh~~~e~q~lqaLREeLa~AE~rL~~ 404 (608)
+.+..+......|+.++.++..+-..-..... -++.++++++++++.++.
T Consensus 220 ~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~-~k~~l~~eI~e~~~~~~~ 269 (325)
T PF08317_consen 220 EQKEEIEAKKKELAELQEELEELEEKIEELEE-QKQELLAEIAEAEKIREE 269 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777776665444433 346677788888877753
No 94
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=90.05 E-value=14 Score=37.61 Aligned_cols=115 Identities=23% Similarity=0.318 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhH---HHHH-HHHHH
Q 007324 421 VELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEA---NQAI-QMQAW 496 (608)
Q Consensus 421 ~elE~qlAeastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka~Ril~gs~e~A---gqv~-qle~~ 496 (608)
.+||.+|-..=.-+.+++..+.+...++..|+.++..++.+...|.+.-..++.-..|+.......+ .+.- .+...
T Consensus 8 ~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~ 87 (246)
T PF00769_consen 8 QELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREA 87 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577776666666777888999999999999999999888888887777666666665553222111 1111 22334
Q ss_pred HHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 007324 497 QDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDA 535 (608)
Q Consensus 497 reev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd~ 535 (608)
..++..+.+.....+.....+++++..++......+..+
T Consensus 88 ~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L 126 (246)
T PF00769_consen 88 EAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEEL 126 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444445555555555555555554
No 95
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=89.76 E-value=59 Score=40.04 Aligned_cols=51 Identities=20% Similarity=0.186 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHhhhhhhhhhhccCC
Q 007324 549 RYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQVCQRVLHSTP 599 (608)
Q Consensus 549 RlreLTE~LyqKQTqLEaLatEKaAl~fQLER~eqq~k~~q~~~~~~~~~~ 599 (608)
.-++|++-|.+=-+.+.+++.+.-...-+|++..|.++..+.-..+|-.++
T Consensus 266 ~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l~~S~ 316 (1109)
T PRK10929 266 INRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQSQWLGVSN 316 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCH
Confidence 367889999888888999999999999999999999999888887777654
No 96
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=89.38 E-value=61 Score=39.63 Aligned_cols=190 Identities=24% Similarity=0.335 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHhhhhhhhhhhhhhhhhHHH
Q 007324 309 YEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMI 388 (608)
Q Consensus 309 ~~~r~k~lQ~ELs~ar~~v~k~EsdlteALAAKdSqLavL~vrldeadq~l~~~e~~La~LQ~e~~RImqdh~~~e~q~l 388 (608)
|.+.+++|.++|-.+|. -|.||- -+|-+.++ -.=.|+.+|+=+++||....+-
T Consensus 229 Lr~QvrdLtEkLetlR~--kR~EDk----------------~Kl~Elek----mkiqleqlqEfkSkim~qqa~L----- 281 (1243)
T KOG0971|consen 229 LRAQVRDLTEKLETLRL--KRAEDK----------------AKLKELEK----MKIQLEQLQEFKSKIMEQQADL----- 281 (1243)
T ss_pred HHHHHHHHHHHHHHHHh--hhhhhH----------------HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH-----
Confidence 78889999999977643 344442 22223222 2234667777799999876553
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 007324 389 QALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQE 468 (608)
Q Consensus 389 qaLREeLa~AE~rL~~Eq~ah~Atr~aamERE~elE~qlAeastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QE 468 (608)
+-+|-.|.-.+++=++++ +|=.+.=..+|+++.- +.+.+-..|+ |++-|++.|.+++-.++.|--+
T Consensus 282 ---qrel~raR~e~keaqe~k--------e~~k~emad~ad~iEm-aTldKEmAEE--RaesLQ~eve~lkEr~deletd 347 (1243)
T KOG0971|consen 282 ---QRELKRARKEAKEAQEAK--------ERYKEEMADTADAIEM-ATLDKEMAEE--RAESLQQEVEALKERVDELETD 347 (1243)
T ss_pred ---HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH-HHhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 333333332232222221 0000011124444443 3344544443 6788888888888888887777
Q ss_pred HHHHHHHHhhccCCCc---hhHHHHHHHH----HHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 007324 469 LQDMEARLKRGQKKSP---EEANQAIQMQ----AWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSRE 541 (608)
Q Consensus 469 LqDyk~ka~Ril~gs~---e~Agqv~qle----~~reev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd~~~~Sr~ 541 (608)
|--.|..-.-. |++ ..++|..||+ -+++-+=++|+--+..+.-.|-+..+++....|+.-+++-.+..|+.
T Consensus 348 lEILKaEmeek--G~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~ 425 (1243)
T KOG0971|consen 348 LEILKAEMEEK--GSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRE 425 (1243)
T ss_pred HHHHHHHHHhc--CCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 75544332221 332 3345555553 25566666666666655556666666666666666666666655554
No 97
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=89.10 E-value=25 Score=34.76 Aligned_cols=56 Identities=23% Similarity=0.269 Sum_probs=45.8
Q ss_pred hHhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHH
Q 007324 292 NAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIET 347 (608)
Q Consensus 292 N~QLEeLLr~E~~~~~S~~~r~k~lQ~ELs~ar~~v~k~EsdlteALAAKdSqLav 347 (608)
...+++-|..-...++.+++.-+.+...+..+...+.+|+..---||.+-+-.||-
T Consensus 33 irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr 88 (219)
T TIGR02977 33 IQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLAR 88 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 34445556666667999999999999999999999999998888888888777664
No 98
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=88.75 E-value=24 Score=40.53 Aligned_cols=31 Identities=10% Similarity=0.113 Sum_probs=21.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007324 446 AKAGELEQKVAMLEVECATLQQELQDMEARL 476 (608)
Q Consensus 446 ~ra~eLeqqv~~lea~~esl~QELqDyk~ka 476 (608)
+-..-|++++..++.+++.+.+.|++|+.+.
T Consensus 267 ~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~ 297 (726)
T PRK09841 267 QSLEFLQRQLPEVRSELDQAEEKLNVYRQQR 297 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3344566777777777777777778887764
No 99
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=87.80 E-value=0.16 Score=57.35 Aligned_cols=193 Identities=21% Similarity=0.288 Sum_probs=0.0
Q ss_pred HHHHhhhhhhhhhhhhhhhHhHHHHHHHHHHH-------hHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhH
Q 007324 274 LARVCAGLSSRLQEYKSENAQLEELLVAEREL-------SRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIE 346 (608)
Q Consensus 274 L~rvc~~ls~rL~~lr~EN~QLEeLLr~E~~~-------~~S~~~r~k~lQ~ELs~ar~~v~k~EsdlteALAAKdSqLa 346 (608)
+++-+..|+-.|+.||-...+++- |-++++. +..|..+++.|++.-....-.....|+.+.-+-+.+ ++|.
T Consensus 289 ~A~~a~~LrDElD~lR~~a~r~~k-lE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~-~qle 366 (713)
T PF05622_consen 289 EAREARALRDELDELREKADRADK-LENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALK-SQLE 366 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHH
Confidence 445555566666666555443321 1223332 666777777777766555555555566666554433 5555
Q ss_pred HHHHHHHHHHHH--------------HHhhHhHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHH------------
Q 007324 347 TLVSSIDALKKQ--------------AALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVER------------ 400 (608)
Q Consensus 347 vL~vrldeadq~--------------l~~~e~~La~LQ~e~~RImqdh~~~e~q~lqaLREeLa~AE~------------ 400 (608)
.++..+....+. .....+.+.+|+.++++++..+.. ++..-++|.-...
T Consensus 367 ~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~-----L~e~~eeL~~~~~~~~~l~~~~~~~ 441 (713)
T PF05622_consen 367 EYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEERDS-----LRETNEELECSQAQQEQLSQSGEES 441 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhhhccccccccccccccc
Confidence 555444444433 344455566666666665532221 1111111111110
Q ss_pred -----HHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007324 401 -----RAEEERAA-HNATKMAAMEREVELEHRAAEAS--MALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDM 472 (608)
Q Consensus 401 -----rL~~Eq~a-h~Atr~aamERE~elE~qlAeas--tAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDy 472 (608)
.+..|... ..-.|+...++|+..=+.-.+.. ..+..++..+++.+++...|+.+...+...+..|++++.+.
T Consensus 442 ~~~~~~l~~El~~~~l~erl~rLe~ENk~Lk~~~e~~~~e~~~~L~~~Leda~~~~~~Le~~~~~~~~~~~~lq~qle~l 521 (713)
T PF05622_consen 442 SSSGDNLSAELNPAELRERLLRLEHENKRLKEKQEESEEEKLEELQSQLEDANRRKEKLEEENREANEKILELQSQLEEL 521 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccchhhhccchHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111 11123333333322211101111 23455788888888888888877666555555555555443
Q ss_pred H
Q 007324 473 E 473 (608)
Q Consensus 473 k 473 (608)
.
T Consensus 522 q 522 (713)
T PF05622_consen 522 Q 522 (713)
T ss_dssp -
T ss_pred H
Confidence 3
No 100
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=87.72 E-value=55 Score=37.10 Aligned_cols=32 Identities=19% Similarity=0.266 Sum_probs=12.6
Q ss_pred chhHHHHHHHHHHHHHHHhhHhHHHHHhhhhh
Q 007324 343 SEIETLVSSIDALKKQAALSEGNLASLQMNME 374 (608)
Q Consensus 343 SqLavL~vrldeadq~l~~~e~~La~LQ~e~~ 374 (608)
.++..+..+++...+.+......+..++....
T Consensus 216 ~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~ 247 (650)
T TIGR03185 216 AELKEQSEKYEDLAQEIAHLRNELEEAQRSLE 247 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444433333
No 101
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=87.00 E-value=38 Score=34.48 Aligned_cols=122 Identities=22% Similarity=0.255 Sum_probs=71.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHH
Q 007324 445 TAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKM 524 (608)
Q Consensus 445 k~ra~eLeqqv~~lea~~esl~QELqDyk~ka~Ril~gs~e~Agqv~qle~~reev~~areq~~~~e~a~qe~~ae~q~~ 524 (608)
-++-.+|+.++.-++.....++++|..++.+|..- .+..+.++.....++..+..+
T Consensus 4 Er~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~L------------------------eek~k~aeeea~~Le~k~~ea 59 (246)
T PF00769_consen 4 EREKQELEERLRQMEEEMRRAQEALEESEETAEEL------------------------EEKLKQAEEEAEELEQKRQEA 59 (246)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 34556788888888888888888888888776542 222333333444555566666
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHhhhhhh
Q 007324 525 RVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQVC 591 (608)
Q Consensus 525 e~El~~~Kqd~~~~Sr~s~~ELE~RlreLTE~LyqKQTqLEaLatEKaAl~fQLER~eqq~k~~q~~ 591 (608)
+.++.+++..... +-.+...|+..+++++...-.=....++-..|...++-+|+.-......+..+
T Consensus 60 ee~~~rL~~~~~~-~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~ 125 (246)
T PF00769_consen 60 EEEKQRLEEEAEM-QEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEE 125 (246)
T ss_dssp HHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666653 33355778888888877665545556666666666666666555544444444
No 102
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=86.88 E-value=38 Score=34.42 Aligned_cols=139 Identities=26% Similarity=0.334 Sum_probs=78.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHH-HHHHHHHHHHHHHhhHhHHHHHhhhhhhhh
Q 007324 299 LVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIET-LVSSIDALKKQAALSEGNLASLQMNMESIM 377 (608)
Q Consensus 299 Lr~E~~~~~S~~~r~k~lQ~ELs~ar~~v~k~EsdlteALAAKdSqLav-L~vrldeadq~l~~~e~~La~LQ~e~~RIm 377 (608)
|..-.+..+.++++-++|+.+|+.++.+..+|+..--.||.+-|-.||. +-.+.+....++......+..
T Consensus 40 l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~--------- 110 (225)
T COG1842 40 LAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQ--------- 110 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 3344455899999999999999999999999999999999998855442 111111222222222222222
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhhhhH
Q 007324 378 RNRELTETRMIQALREELASVERRAEEERAAHNAT--KMAAMEREVELEHRA-----AEASMALARIQRIADERTAKAGE 450 (608)
Q Consensus 378 qdh~~~e~q~lqaLREeLa~AE~rL~~Eq~ah~At--r~aamERE~elE~ql-----AeastAL~~~QR~~~E~k~ra~e 450 (608)
...++..|+..+...+..+..=+.-+.+. |-+...=...+...+ .+++.+|.+|+++++++-.++.-
T Consensus 111 ------~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~~sa~~~fer~e~kiee~ea~a~~ 184 (225)
T COG1842 111 ------AEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSSSSAMAAFERMEEKIEEREARAEA 184 (225)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 24455556666666555553222223211 111111122233332 25566778888888877776654
Q ss_pred HH
Q 007324 451 LE 452 (608)
Q Consensus 451 Le 452 (608)
..
T Consensus 185 ~~ 186 (225)
T COG1842 185 AA 186 (225)
T ss_pred hH
Confidence 44
No 103
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=86.85 E-value=83 Score=38.24 Aligned_cols=147 Identities=21% Similarity=0.303 Sum_probs=82.2
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHH----HHHHHHHHHHHHhH-----
Q 007324 437 IQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQM----QAWQDEVERARQGQ----- 507 (608)
Q Consensus 437 ~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka~Ril~gs~e~Agqv~ql----e~~reev~~areq~----- 507 (608)
+++.+++-.+++-..+.+...++--..-+.|+=.|+..|--.+++.-...--.+..+ ..+-.+|+.++.+-
T Consensus 408 a~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~ 487 (980)
T KOG0980|consen 408 AQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAET 487 (980)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444466666666677777777777777777777777777666664311100001111 12233333333333
Q ss_pred --HHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHHhHHHH
Q 007324 508 --RDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMAS---EKAAAEFQLEKEM 582 (608)
Q Consensus 508 --~~~e~a~qe~~ae~q~~e~El~~~Kqd~~~~Sr~s~~ELE~RlreLTE~LyqKQTqLEaLat---EKaAl~fQLER~e 582 (608)
+++...+.+++.|+..+--|++.+++.+.+ +.+++. +.+-+|.+.|-+|--.+..+.. |+.++-|.+||.+
T Consensus 488 K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~-~~qs~~---~~~~~l~~~l~~KD~~~~~~~~~~~e~~~~~~e~e~si 563 (980)
T KOG0980|consen 488 KTESQAKALESLRQELALLLIELEELQRTLSN-LAQSHN---NQLAQLEDLLKQKDRLAAELVAREEEREALRLEAERSI 563 (980)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHH---HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 334444444555555555555555555444 233332 4566788888888887776654 4667788888886
Q ss_pred HHHhh
Q 007324 583 NRLQE 587 (608)
Q Consensus 583 qq~k~ 587 (608)
.|++-
T Consensus 564 ~ql~l 568 (980)
T KOG0980|consen 564 NQLEL 568 (980)
T ss_pred HHhhc
Confidence 66653
No 104
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=86.52 E-value=59 Score=36.24 Aligned_cols=140 Identities=16% Similarity=0.114 Sum_probs=77.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 007324 384 ETRMIQALREELASVERRAEEERAAHNATK------------MAAMEREVELEHRAAEASMALARIQRIADERTAKAGEL 451 (608)
Q Consensus 384 e~q~lqaLREeLa~AE~rL~~Eq~ah~Atr------------~aamERE~elE~qlAeastAL~~~QR~~~E~k~ra~eL 451 (608)
...+|.-.++++..||.++..=+.+=.+=| -+-+.-=..||.++++.-+-|+.+.+.+.+..-++..|
T Consensus 240 r~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l 319 (434)
T PRK15178 240 QKERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRL 319 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHH
Confidence 355677777788888888776666621111 11122223566666666666666666666666666555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHH
Q 007324 452 EQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAM 531 (608)
Q Consensus 452 eqqv~~lea~~esl~QELqDyk~ka~Ril~gs~e~Agqv~qle~~reev~~areq~~~~e~a~qe~~ae~q~~e~El~~~ 531 (608)
..++..++.+++..+. +..-. +|++..+..+.+.+.+.=+.+-++.....+-.++ +.+|.|-.|.
T Consensus 320 ~~rI~aLe~QIa~er~-------kl~~~-~g~~~la~~laeYe~L~le~efAe~~y~sAlaaL-------E~AR~EA~RQ 384 (434)
T PRK15178 320 SAKIKVLEKQIGEQRN-------RLSNK-LGSQGSSESLSLFEDLRLQSEIAKARWESALQTL-------QQGKLQALRE 384 (434)
T ss_pred HHHHHHHHHHHHHHHH-------HhhcC-CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhh
Confidence 5555555555544444 43321 1222334455566777666666666665444444 4448887666
Q ss_pred HHHHhhh
Q 007324 532 KRDAEHY 538 (608)
Q Consensus 532 Kqd~~~~ 538 (608)
..=+..+
T Consensus 385 ~~YL~~i 391 (434)
T PRK15178 385 RQYLLII 391 (434)
T ss_pred hhheeee
Confidence 6555533
No 105
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=86.30 E-value=39 Score=34.78 Aligned_cols=29 Identities=14% Similarity=0.209 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007324 449 GELEQKVAMLEVECATLQQELQDMEARLK 477 (608)
Q Consensus 449 ~eLeqqv~~lea~~esl~QELqDyk~ka~ 477 (608)
..++.++..+++.++.++.++..|+.-..
T Consensus 117 ~~~~~~i~~a~~~l~~a~~~~~R~~~L~~ 145 (346)
T PRK10476 117 ASANEQVERARANAKLATRTLERLEPLLA 145 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666667777777777766665443
No 106
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.07 E-value=98 Score=37.47 Aligned_cols=81 Identities=11% Similarity=0.211 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhh------hHHHHHHHHHHHHHHHH---HHHHHHH
Q 007324 495 AWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSRE------EHMELEKRYRELTDLLY---YKQTQLE 565 (608)
Q Consensus 495 ~~reev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd~~~~Sr~------s~~ELE~RlreLTE~Ly---qKQTqLE 565 (608)
.+-+.|.+.|-.+..++..+.++..+|.-|..||..+++.+.-|+.. +-.+|..+|.+.--.+- +.+..|+
T Consensus 455 qls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~ 534 (1118)
T KOG1029|consen 455 QLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELE 534 (1118)
T ss_pred HHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHH
Confidence 34445556666666666666667777777777766666666644322 22444444443322221 2245677
Q ss_pred HhhhHHHHHH
Q 007324 566 TMASEKAAAE 575 (608)
Q Consensus 566 aLatEKaAl~ 575 (608)
++..+|-.+-
T Consensus 535 aa~~~ke~ir 544 (1118)
T KOG1029|consen 535 AARRKKELIR 544 (1118)
T ss_pred HHHHHHHHHH
Confidence 7777765443
No 107
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=84.56 E-value=41 Score=32.65 Aligned_cols=42 Identities=24% Similarity=0.296 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 007324 423 LEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECAT 464 (608)
Q Consensus 423 lE~qlAeastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~es 464 (608)
++.++......+..+...+.+-+.|..++..+..++.+....
T Consensus 103 l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~ 144 (221)
T PF04012_consen 103 LEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENA 144 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666777777777777766666554443
No 108
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=83.12 E-value=44 Score=33.01 Aligned_cols=29 Identities=17% Similarity=0.242 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCc
Q 007324 456 AMLEVECATLQQELQDMEARLKRGQKKSP 484 (608)
Q Consensus 456 ~~lea~~esl~QELqDyk~ka~Ril~gs~ 484 (608)
+.++..++.+.....+|+.+|...+.++-
T Consensus 55 k~~e~~~~~~~~~~~~~~~~A~~Al~~G~ 83 (219)
T TIGR02977 55 KELERRVSRLEAQVADWQEKAELALSKGR 83 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 34445555666666777777777775444
No 109
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=83.04 E-value=42 Score=31.67 Aligned_cols=92 Identities=22% Similarity=0.381 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHH
Q 007324 423 LEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVER 502 (608)
Q Consensus 423 lE~qlAeastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka~Ril~gs~e~Agqv~qle~~reev~~ 502 (608)
++..+.+.-..|+.+++.+++...+..+++..+..++.....++..+.+++.+. .+|.+....
T Consensus 79 ~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l-----------------~~l~~~~~~ 141 (191)
T PF04156_consen 79 LQGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERL-----------------DSLDESIKE 141 (191)
T ss_pred hhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-----------------HHHHHHHHH
Confidence 344566666666677777777666666666666666666666665555554432 344445555
Q ss_pred HHHhHHHHHHhHHHHHHHHHHHHHHHHHH
Q 007324 503 ARQGQRDAENKLSSLEAEVQKMRVEMAAM 531 (608)
Q Consensus 503 areq~~~~e~a~qe~~ae~q~~e~El~~~ 531 (608)
+....+....+.+..+.+++.++.++.++
T Consensus 142 ~~~e~~~l~~~~~~~~~~~~~~~~~~~~~ 170 (191)
T PF04156_consen 142 LEKEIRELQKELQDSREEVQELRSQLERL 170 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555444444444444444444444
No 110
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=81.52 E-value=83 Score=33.98 Aligned_cols=69 Identities=20% Similarity=0.217 Sum_probs=44.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 007324 384 ETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQK 454 (608)
Q Consensus 384 e~q~lqaLREeLa~AE~rL~~Eq~ah~Atr~aamERE~elE~qlAeastAL~~~QR~~~E~k~ra~eLeqq 454 (608)
-...+..||.++..+|+.+..=+..|..+-. ..-+.-.++++.+-.+.|..+++......++..-+.+.
T Consensus 200 l~~~l~~lr~~~~~ae~~~~~~~~~~~l~~~--~~~~~~~~~~~~~ln~ql~~~~~~~~~~~a~l~~~~~~ 268 (458)
T COG3206 200 LDERLEELRARLQEAEAQVEDFRAQHGLTDA--ARGQLLSEQQLSALNTQLQSARARLAQAEARLASLLQL 268 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCccc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3667888899999999888665555533322 22233346667777777777777777776665554443
No 111
>PRK11519 tyrosine kinase; Provisional
Probab=81.20 E-value=1.1e+02 Score=35.27 Aligned_cols=16 Identities=13% Similarity=-0.004 Sum_probs=11.6
Q ss_pred chhhhhhhcccccccc
Q 007324 91 TLAVEKETITTGKTQK 106 (608)
Q Consensus 91 t~~~e~~~~ss~~~~q 106 (608)
.+.+|.|.|.|..+..
T Consensus 86 ~~~tEieILkSr~v~~ 101 (719)
T PRK11519 86 ASDAEIQLIRSRLVLG 101 (719)
T ss_pred chHHHHHHHHHHHHHH
Confidence 4667778888877775
No 112
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=80.38 E-value=50 Score=35.43 Aligned_cols=121 Identities=22% Similarity=0.284 Sum_probs=67.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC----CchhHHHHHHH-----------HHHHHHHHHHHHhHHHH
Q 007324 446 AKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKK----SPEEANQAIQM-----------QAWQDEVERARQGQRDA 510 (608)
Q Consensus 446 ~ra~eLeqqv~~lea~~esl~QELqDyk~ka~Ril~g----s~e~Agqv~ql-----------e~~reev~~areq~~~~ 510 (608)
+|+..|+..-..|+.++..|+.+-..|+.+-+.-... -.....+|..| ...++||..+.-++...
T Consensus 167 ~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Llsqivdl 246 (306)
T PF04849_consen 167 EKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDL 246 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666667777776666666665443321 11111222222 33566777777777777
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007324 511 ENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETM 567 (608)
Q Consensus 511 e~a~qe~~ae~q~~e~El~~~Kqd~~~~Sr~s~~ELE~RlreLTE~LyqKQTqLEaL 567 (608)
......+-.+-+.+..=|...|.-=... ...-.+|+.||-++..||.-=|..|-.|
T Consensus 247 Q~r~k~~~~EnEeL~q~L~~ske~Q~~L-~aEL~elqdkY~E~~~mL~EaQEElk~l 302 (306)
T PF04849_consen 247 QQRCKQLAAENEELQQHLQASKESQRQL-QAELQELQDKYAECMAMLHEAQEELKTL 302 (306)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666433333333333332111110 1245788899999999998888877654
No 113
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=80.31 E-value=0.54 Score=53.27 Aligned_cols=17 Identities=24% Similarity=0.382 Sum_probs=0.0
Q ss_pred HHhHHHHHHHhhhhhhh
Q 007324 576 FQLEKEMNRLQEVQVCQ 592 (608)
Q Consensus 576 fQLER~eqq~k~~q~~~ 592 (608)
-+|+...+++++++.+.
T Consensus 540 ~~le~~~~~l~e~~~e~ 556 (713)
T PF05622_consen 540 QKLEEHLEKLRELKDEL 556 (713)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555554443
No 114
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=80.03 E-value=1.5e+02 Score=35.95 Aligned_cols=80 Identities=11% Similarity=0.077 Sum_probs=40.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCc----hhHHHH----HHHHHHHHHHHHHHHhHH
Q 007324 437 IQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSP----EEANQA----IQMQAWQDEVERARQGQR 508 (608)
Q Consensus 437 ~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka~Ril~gs~----e~Agqv----~qle~~reev~~areq~~ 508 (608)
++..+.+.......++..+..+...+..+++++......-...+...| ...... .++..++.++..++....
T Consensus 715 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~f~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~ 794 (1047)
T PRK10246 715 ALDNWRQVHEQCLSLHSQLQTLQQQDVLEAQRLQKAQAQFDTALQASVFDDQQAFLAALLDEETLTQLEQLKQNLENQRQ 794 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555666666666666666666555554444443333 111111 134556666666665555
Q ss_pred HHHHhHHH
Q 007324 509 DAENKLSS 516 (608)
Q Consensus 509 ~~e~a~qe 516 (608)
.....+.+
T Consensus 795 ~~~~~~~~ 802 (1047)
T PRK10246 795 QAQTLVTQ 802 (1047)
T ss_pred HHHHHHHH
Confidence 55443333
No 115
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=79.11 E-value=21 Score=36.04 Aligned_cols=94 Identities=24% Similarity=0.393 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC--CCchhHHHHHHHHHHH
Q 007324 420 EVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQK--KSPEEANQAIQMQAWQ 497 (608)
Q Consensus 420 E~elE~qlAeastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka~Ril~--gs~e~Agqv~qle~~r 497 (608)
+++|+++|++-=+-|..+++....+ ...-....++.+-+++ .|=|||..=-|-++ .++.+.+ +.+.+
T Consensus 98 evrLkrELa~Le~~l~~~~~~~~~~---~~~~~~~~~lvk~e~E----qLL~YK~~ql~~~~~~~~~~~~~----l~~v~ 166 (195)
T PF12761_consen 98 EVRLKRELAELEEKLSKVEQAAESR---RSDTDSKPALVKREFE----QLLDYKERQLRELEEGRSKSGKN----LKSVR 166 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc---ccCCcchHHHHHHHHH----HHHHHHHHHHHhhhccCCCCCCC----HHHHH
Confidence 6779999998888888888877765 1122233344454443 35577777666664 2223332 56778
Q ss_pred HHHHHHHHhHHHHHHhHHHHHHHHHHH
Q 007324 498 DEVERARQGQRDAENKLSSLEAEVQKM 524 (608)
Q Consensus 498 eev~~areq~~~~e~a~qe~~ae~q~~ 524 (608)
+.|+.+++|+..++..+..-+.+++.+
T Consensus 167 ~Dl~~ie~QV~~Le~~L~~k~~eL~~L 193 (195)
T PF12761_consen 167 EDLDTIEEQVDGLESHLSSKKQELQQL 193 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 889999999999999888885555544
No 116
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=77.88 E-value=1.9e+02 Score=35.96 Aligned_cols=134 Identities=22% Similarity=0.343 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHHHHHHhhHhHHHHHhhhh---hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--HHHHH
Q 007324 345 IETLVSSIDALKKQAALSEGNLASLQMNM---ESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKM--AAMER 419 (608)
Q Consensus 345 LavL~vrldeadq~l~~~e~~La~LQ~e~---~RImqdh~~~e~q~lqaLREeLa~AE~rL~~Eq~ah~Atr~--aamER 419 (608)
+.+++..+.++.+++......+-.-+... ++-|.|+--...+=|..|.-++-.+..++++...----.+. ..+.=
T Consensus 743 ~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~l 822 (1174)
T KOG0933|consen 743 LKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQL 822 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555444444332 33455555555555555666666665555433221000000 00110
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007324 420 EV-ELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKR 478 (608)
Q Consensus 420 E~-elE~qlAeastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka~R 478 (608)
|+ +|+..+-..=.-|..+......=+.....|.-++...+..+..+..+|.|-+.+-+.
T Consensus 823 E~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~ 882 (1174)
T KOG0933|consen 823 EHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRD 882 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHh
Confidence 00 111112222223333444444445555566666666666677777777776666543
No 117
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=77.64 E-value=24 Score=32.89 Aligned_cols=83 Identities=23% Similarity=0.313 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 007324 494 QAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHY--SREEHMELEKRYRELTDLLYYKQTQLETMASEK 571 (608)
Q Consensus 494 e~~reev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd~~~~--Sr~s~~ELE~RlreLTE~LyqKQTqLEaLatEK 571 (608)
....+|+..++..+......+.++..|+-++-.+.+.++...... -+....+|+.||--+-+||= ||
T Consensus 26 r~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellG-----------EK 94 (120)
T PF12325_consen 26 RRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLG-----------EK 94 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------ch
Confidence 446666667777766666666666666666666555554333211 23345667777655555543 55
Q ss_pred HHHHHHhHHHHHHHhh
Q 007324 572 AAAEFQLEKEMNRLQE 587 (608)
Q Consensus 572 aAl~fQLER~eqq~k~ 587 (608)
.-.+..|.-..+-+|+
T Consensus 95 ~E~veEL~~Dv~DlK~ 110 (120)
T PF12325_consen 95 SEEVEELRADVQDLKE 110 (120)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555554443
No 118
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=77.28 E-value=1.7e+02 Score=35.19 Aligned_cols=82 Identities=20% Similarity=0.334 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCc------hhHHHHH---------HHHHHHHHHHHHHHhHHHHHHhHH
Q 007324 451 LEQKVAMLEVECATLQQELQDMEARLKRGQKKSP------EEANQAI---------QMQAWQDEVERARQGQRDAENKLS 515 (608)
Q Consensus 451 Leqqv~~lea~~esl~QELqDyk~ka~Ril~gs~------e~Agqv~---------qle~~reev~~areq~~~~e~a~q 515 (608)
.+...-.+..+++-+++||++.-++-.--.++.- .+.-|++ ..+.+-.+++.+..++.+....+.
T Consensus 161 ~eer~~kl~~~~qe~naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~ 240 (916)
T KOG0249|consen 161 IEERTRKLEEQLEELNAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKD 240 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666777777777776665544443211 2222222 114455566666666666666666
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007324 516 SLEAEVQKMRVEMAAMK 532 (608)
Q Consensus 516 e~~ae~q~~e~El~~~K 532 (608)
.+....++++.|++.|+
T Consensus 241 rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 241 KLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHhhhHHHHHHHHHHHH
Confidence 66555566666666665
No 119
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=76.99 E-value=17 Score=38.19 Aligned_cols=93 Identities=23% Similarity=0.317 Sum_probs=78.3
Q ss_pred HHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 007324 496 WQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAE 575 (608)
Q Consensus 496 ~reev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd~~~~Sr~s~~ELE~RlreLTE~LyqKQTqLEaLatEKaAl~ 575 (608)
.+..+..+......++..+.+.+.++..++..++.++.+++.. -.....|+..+......|..=++.+..|+.|+.-=.
T Consensus 219 ~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~-~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~ 297 (344)
T PF12777_consen 219 KRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEA-QKEKQELEEEIEETERKLERAEKLISGLSGEKERWS 297 (344)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHH
Confidence 6778888888888888888888888888888888888888853 334788999999999999999999999999999888
Q ss_pred HHhHHHHHHHhhhh
Q 007324 576 FQLEKEMNRLQEVQ 589 (608)
Q Consensus 576 fQLER~eqq~k~~q 589 (608)
-+++.+..++...-
T Consensus 298 ~~~~~l~~~~~~l~ 311 (344)
T PF12777_consen 298 EQIEELEEQLKNLV 311 (344)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccH
Confidence 88888888777653
No 120
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=76.39 E-value=34 Score=31.43 Aligned_cols=104 Identities=19% Similarity=0.262 Sum_probs=59.1
Q ss_pred hHhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHhh
Q 007324 292 NAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQM 371 (608)
Q Consensus 292 N~QLEeLLr~E~~~~~S~~~r~k~lQ~ELs~ar~~v~k~EsdlteALAAKdSqLavL~vrldeadq~l~~~e~~La~LQ~ 371 (608)
+.+|++||.++- .+..|......++. +...+..+-..=.+|++.+-++..+|..++..+...-..+.........+..
T Consensus 6 ~~eL~~Ll~d~~-~l~~~v~~l~~~~~-~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~ 83 (150)
T PF07200_consen 6 TEELQELLSDEE-KLDAFVKSLPQVQE-LQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQ 83 (150)
T ss_dssp THHHHHHHHH-H-HHHHHGGGGS--HH-HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCHH-HHHHHHHcCHHHHH-HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888998883 33334444322221 2222222222235677777777899999999998888888888888888888
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 007324 372 NMESIMRNRELTETRMIQALREELASVE 399 (608)
Q Consensus 372 e~~RImqdh~~~e~q~lqaLREeLa~AE 399 (608)
....++.+.+.. -+...|+...+.+|
T Consensus 84 ~~~~l~~~~s~~--~l~~~L~~~~~e~e 109 (150)
T PF07200_consen 84 QQDELSSNYSPD--ALLARLQAAASEAE 109 (150)
T ss_dssp HHHHHHHCHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHccCCHH--HHHHHHHHHHHHHH
Confidence 777776555432 23334444444433
No 121
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=76.26 E-value=1.1e+02 Score=32.54 Aligned_cols=181 Identities=25% Similarity=0.294 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHH-------------------H
Q 007324 398 VERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAG-ELEQKVA-------------------M 457 (608)
Q Consensus 398 AE~rL~~Eq~ah~Atr~aamERE~elE~qlAeastAL~~~QR~~~E~k~ra~-eLeqqv~-------------------~ 457 (608)
||+||+..|.++.-+|-=-|. +||+|.-|.-.. ..|.+.....+.. .+..-.. -
T Consensus 1 AEarlaakR~araEAR~iRmr---eLErqqkE~ee~---~Dr~~~~~~Sr~~s~ls~~t~~S~~~sSSRRsS~DtSsS~d 74 (302)
T PF09738_consen 1 AEARLAAKRAARAEAREIRMR---ELERQQKEQEEN---SDRRYDSSSSRRHSDLSQWTLNSLRGSSSRRSSGDTSSSVD 74 (302)
T ss_pred ChhhHHHHHHhhHHHHHHHHH---HHHHHHHHHHhh---hhhhhhcccCccCCccchhhhcCCCCCCCCCCCCccccccc
Confidence 688999999888877766665 688886664332 3444433332221 1111110 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHH----HHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 007324 458 LEVECATLQQELQDMEARLKRGQKKSPEEANQAIQM----QAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKR 533 (608)
Q Consensus 458 lea~~esl~QELqDyk~ka~Ril~gs~e~Agqv~ql----e~~reev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kq 533 (608)
.++.+.-++-+|.+.+.|-+... =...|| .++.=||+-+...+.+.+..+.++..+...---+++++|+
T Consensus 75 se~s~r~lk~~l~evEekyrkAM-------v~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~ 147 (302)
T PF09738_consen 75 SEASLRDLKDSLAEVEEKYRKAM-------VSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKR 147 (302)
T ss_pred ccccHHHHHHHHHHHHHHHHHHH-------HHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12244455666666666655433 011122 2333344444444444444444444444444456888888
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHH------------------------------H---HHHH------------hh
Q 007324 534 DAEHYSREEHMELEKRYRELTDLLYYKQ------------------------------T---QLET------------MA 568 (608)
Q Consensus 534 d~~~~Sr~s~~ELE~RlreLTE~LyqKQ------------------------------T---qLEa------------La 568 (608)
.++-. +....+|...|++.-++ |.|. . .|++ |+
T Consensus 148 ~~d~L-~~e~~~Lre~L~~rdel-i~khGlVlv~~~~ngd~~~~~~~~~~~~~~~vs~e~a~~L~~aG~g~LDvRLkKl~ 225 (302)
T PF09738_consen 148 AHDSL-REELDELREQLKQRDEL-IEKHGLVLVPDATNGDTSDEPNNVGHPKRALVSQEAAQLLESAGDGSLDVRLKKLA 225 (302)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHH-HHHCCeeeCCCCCCCccccCccccCCCcccccchhhhhhhcccCCCCHHHHHHHHH
Confidence 77742 22345566666554332 2221 1 1222 24
Q ss_pred hHHHHHHHHhHHHHHHHhhhhhhhh
Q 007324 569 SEKAAAEFQLEKEMNRLQEVQVCQR 593 (608)
Q Consensus 569 tEKaAl~fQLER~eqq~k~~q~~~~ 593 (608)
-||..|.-|+.++..|+.+-+...+
T Consensus 226 ~eke~L~~qv~klk~qLee~~~~~~ 250 (302)
T PF09738_consen 226 DEKEELLEQVRKLKLQLEERQSEGR 250 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5677787888888888866655555
No 122
>PRK10884 SH3 domain-containing protein; Provisional
Probab=75.73 E-value=18 Score=36.15 Aligned_cols=31 Identities=16% Similarity=0.311 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHHHHhhHhHHHHHhhhhhh
Q 007324 345 IETLVSSIDALKKQAALSEGNLASLQMNMES 375 (608)
Q Consensus 345 LavL~vrldeadq~l~~~e~~La~LQ~e~~R 375 (608)
+..|+.+.+.+.+++......+..|+.++++
T Consensus 134 ~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~ 164 (206)
T PRK10884 134 INGLKEENQKLKNQLIVAQKKVDAANLQLDD 164 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444554444444444444444444433
No 123
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=75.12 E-value=2e+02 Score=34.88 Aligned_cols=26 Identities=12% Similarity=0.161 Sum_probs=10.7
Q ss_pred HHHhcccchhHHHHHHHHHHHHHHHh
Q 007324 336 EALAAKNSEIETLVSSIDALKKQAAL 361 (608)
Q Consensus 336 eALAAKdSqLavL~vrldeadq~l~~ 361 (608)
+++++...++..+..........+..
T Consensus 216 e~~~~l~~~~~~l~~~~~~~~~~~~~ 241 (1047)
T PRK10246 216 EQVQSLTASLQVLTDEEKQLLTAQQQ 241 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433333
No 124
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=74.41 E-value=1.3e+02 Score=32.50 Aligned_cols=29 Identities=10% Similarity=0.327 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007324 450 ELEQKVAMLEVECATLQQELQDMEARLKR 478 (608)
Q Consensus 450 eLeqqv~~lea~~esl~QELqDyk~ka~R 478 (608)
++.++...+++++..++.+|..++....+
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~a~~~l~~ 316 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKSLKEDSQK 316 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44455555555555555555555544443
No 125
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=73.16 E-value=2.2e+02 Score=34.33 Aligned_cols=34 Identities=21% Similarity=0.063 Sum_probs=13.3
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHhhhHHHHHHHHhH
Q 007324 546 LEKRYRELTD-LLYYKQTQLETMASEKAAAEFQLE 579 (608)
Q Consensus 546 LE~RlreLTE-~LyqKQTqLEaLatEKaAl~fQLE 579 (608)
|..+..+++- -+.....+|+.+..+-.....+|+
T Consensus 442 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 476 (1042)
T TIGR00618 442 LCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQ 476 (1042)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444443 333333344444443333333333
No 126
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=72.80 E-value=48 Score=35.81 Aligned_cols=67 Identities=19% Similarity=0.258 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHh
Q 007324 433 ALARIQRIADERTAKAGELEQKVAMLEVECATLQQE-LQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQG 506 (608)
Q Consensus 433 AL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QE-LqDyk~ka~Ril~gs~e~Agqv~qle~~reev~~areq 506 (608)
+|..++..+....+..+.++.++..+++.++..+-. |.-......|-......+++ .++++++++-.
T Consensus 92 al~qAea~la~a~~~~~~~~a~~~~~~A~i~~a~a~~l~~a~~~~~R~~~L~~~g~v-------s~~~~~~a~~a 159 (352)
T COG1566 92 ALEQAEAALAAAEAQLRNLRAQLASAQALIAQAEAQDLDQAQNELERRAELAQRGVV-------SREELDRARAA 159 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-------cHHHHHHHHHH
Confidence 455566666666677777777777777777766663 65555555555543333333 34455555543
No 127
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=72.59 E-value=1e+02 Score=30.31 Aligned_cols=26 Identities=15% Similarity=0.272 Sum_probs=11.0
Q ss_pred cchhHHHHHHHHHHHHHHHhhHhHHH
Q 007324 342 NSEIETLVSSIDALKKQAALSEGNLA 367 (608)
Q Consensus 342 dSqLavL~vrldeadq~l~~~e~~La 367 (608)
..++...+.++.+.+..+..+...|.
T Consensus 83 ~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 83 RKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 128
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=72.36 E-value=1.7e+02 Score=32.91 Aligned_cols=253 Identities=16% Similarity=0.216 Sum_probs=119.4
Q ss_pred cchhhhHHHHhhHHH---hhhhcchhhHHHHHHHhhhhhhhhhhhhhhh---------------HhHHHHHHHHHHH---
Q 007324 247 TKEQDQLDEAQGLLK---TTISTGQSKEARLARVCAGLSSRLQEYKSEN---------------AQLEELLVAEREL--- 305 (608)
Q Consensus 247 ~K~qdql~ea~~ll~---~~~~~g~ske~rL~rvc~~ls~rL~~lr~EN---------------~QLEeLLr~E~~~--- 305 (608)
-.+..+|++....+. ....+|.--+|+ .+...+...+..|..-. .||.||-..=.+.
T Consensus 168 ~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~--e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~ 245 (569)
T PRK04778 168 DELEKQLENLEEEFSQFVELTESGDYVEAR--EILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEE 245 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHc
Confidence 356666666665554 345677777765 33333333333333222 4444443321111
Q ss_pred -----hHHHHHHHHHHHHHHhhhhhhhhhhh---------------hhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhH
Q 007324 306 -----SRSYEARIKQLEQELSVYKSEVTKVE---------------SNLAEALAAKNSEIETLVSSIDALKKQAALSEGN 365 (608)
Q Consensus 306 -----~~S~~~r~k~lQ~ELs~ar~~v~k~E---------------sdlteALAAKdSqLavL~vrldeadq~l~~~e~~ 365 (608)
--++..++..+++.+..+...+...+ +.|.+.|..--..-..+..........+.-....
T Consensus 246 gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~ 325 (569)
T PRK04778 246 GYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQ 325 (569)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 12345556666666655433333321 3333333332222333444445555556666777
Q ss_pred HHHHhhhhhhhhhhhh--hhhhHHHHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007324 366 LASLQMNMESIMRNRE--LTETRMIQALREELASVERRAEEERAAH--NATKMAAMEREVELEHRAAEASMALARIQRIA 441 (608)
Q Consensus 366 La~LQ~e~~RImqdh~--~~e~q~lqaLREeLa~AE~rL~~Eq~ah--~Atr~aamERE~elE~qlAeastAL~~~QR~~ 441 (608)
...|..+.+++-++-. +++...+..+.++|...+.++..=...- .+.-.+. ++.++.+...-|..+....
T Consensus 326 ~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~yse------l~e~leel~e~leeie~eq 399 (569)
T PRK04778 326 NKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSE------LQEELEEILKQLEEIEKEQ 399 (569)
T ss_pred HHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHH------HHHHHHHHHHHHHHHHHHH
Confidence 7778888888877744 3356777888888888877775322221 1111111 2233333333333344333
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCCchhHHHHHHHHHHHHHHHHHHHhHHH
Q 007324 442 DERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRG-QKKSPEEANQAIQMQAWQDEVERARQGQRD 509 (608)
Q Consensus 442 ~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka~Ri-l~gs~e~Agqv~qle~~reev~~areq~~~ 509 (608)
.+-+.....|...-..++..+.-++..|...+....+. ++|-|... ...+..+..++..+...+..
T Consensus 400 ~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y--~~~~~~~~~~i~~l~~~L~~ 466 (569)
T PRK04778 400 EKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDY--LEMFFEVSDEIEALAEELEE 466 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHH--HHHHHHHHHHHHHHHHHhcc
Confidence 33333333333333334444444444444333333332 34444332 23334555555555444433
No 129
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=71.85 E-value=1.1e+02 Score=30.20 Aligned_cols=82 Identities=11% Similarity=0.244 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCchhH-----HHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHH
Q 007324 455 VAMLEVECATLQQELQDMEARLKRGQKKSPEEA-----NQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMA 529 (608)
Q Consensus 455 v~~lea~~esl~QELqDyk~ka~Ril~gs~e~A-----gqv~qle~~reev~~areq~~~~e~a~qe~~ae~q~~e~El~ 529 (608)
+..++..+..++.+...++.+...++.++..+. -...++...+..+..++..+......+...+.++..++..+.
T Consensus 22 L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~ 101 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLE 101 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555554322111 111133445555666666666666666666666666666666
Q ss_pred HHHHHHh
Q 007324 530 AMKRDAE 536 (608)
Q Consensus 530 ~~Kqd~~ 536 (608)
..+..+.
T Consensus 102 ~~~~~l~ 108 (302)
T PF10186_consen 102 QRRSRLS 108 (302)
T ss_pred HHHHHHH
Confidence 6666555
No 130
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=71.55 E-value=80 Score=34.05 Aligned_cols=89 Identities=12% Similarity=0.150 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--CCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHH
Q 007324 450 ELEQKVAMLEVECATLQQELQDMEARLKRGQ--KKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVE 527 (608)
Q Consensus 450 eLeqqv~~lea~~esl~QELqDyk~ka~Ril--~gs~e~Agqv~qle~~reev~~areq~~~~e~a~qe~~ae~q~~e~E 527 (608)
+|.|++.-+.-.+-.|++-+.++......+- ..+.+...-|.||+.++.+...++.-++.....++++..||-.++-=
T Consensus 90 ~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K 169 (319)
T PF09789_consen 90 ELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCK 169 (319)
T ss_pred HHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555544332111 11234446666889999999999999999999999999999999999
Q ss_pred HHHHHHHHhhh
Q 007324 528 MAAMKRDAEHY 538 (608)
Q Consensus 528 l~~~Kqd~~~~ 538 (608)
+.|+-+++-|.
T Consensus 170 ~~RLN~ELn~~ 180 (319)
T PF09789_consen 170 AHRLNHELNYI 180 (319)
T ss_pred HHHHHHHHHHH
Confidence 99999998755
No 131
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=71.52 E-value=1.5e+02 Score=31.97 Aligned_cols=194 Identities=18% Similarity=0.261 Sum_probs=94.3
Q ss_pred hhHHHHHHHhhhhhhhhhhhhhhhHhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhc-ccchhHH
Q 007324 269 SKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAA-KNSEIET 347 (608)
Q Consensus 269 ske~rL~rvc~~ls~rL~~lr~EN~QLEeLLr~E~~~~~S~~~r~k~lQ~ELs~ar~~v~k~EsdlteALAA-KdSqLav 347 (608)
-.|-.|+.++.+-+..|.-|+.||.-|---|-+|.+....++..+....--| +.+=.|...-.++ .|-+++
T Consensus 49 LneE~ltkTi~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRL-------aaAi~d~dqsq~skrdlela- 120 (305)
T PF14915_consen 49 LNEETLTKTIFQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRL-------AAAIQDHDQSQTSKRDLELA- 120 (305)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHH-------HHHHhhHHHHHhhHHHHHHH-
Confidence 4577899999999999999999999333333455555555555555444444 3333333333333 233333
Q ss_pred HHHHHHHHHHHHHhhHhHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHH
Q 007324 348 LVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREV-ELEHR 426 (608)
Q Consensus 348 L~vrldeadq~l~~~e~~La~LQ~e~~RImqdh~~~e~q~lqaLREeLa~AE~rL~~Eq~ah~Atr~aamERE~-elE~q 426 (608)
+..-.|+|-..-.-....+..|...+.-|.+.-+..++. +-+|.-+||-+--+|++-.-. +.-|.|.- ....|
T Consensus 121 fqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK-~nsLe~elh~trdaLrEKtL~-----lE~~QrdL~Qtq~q 194 (305)
T PF14915_consen 121 FQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESK-FNSLEIELHHTRDALREKTLA-----LESVQRDLSQTQCQ 194 (305)
T ss_pred HHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 333445555544444444445544444444443333322 233444444443333221111 00011000 00111
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007324 427 AAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARL 476 (608)
Q Consensus 427 lAeastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka 476 (608)
+-++=...-.-+.++..-..|-.-+++++.-+..+---|+|.|-|.-.|+
T Consensus 195 ~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~ 244 (305)
T PF14915_consen 195 IKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKA 244 (305)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111112223344444445555566666666666667777777766654
No 132
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=71.14 E-value=71 Score=33.67 Aligned_cols=75 Identities=20% Similarity=0.345 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 007324 458 LEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAE 536 (608)
Q Consensus 458 lea~~esl~QELqDyk~ka~Ril~gs~e~Agqv~qle~~reev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd~~ 536 (608)
++..++.+..|...|..-..+.....+.. ........++..+......+...+.+++.++..+..|+..++.+..
T Consensus 14 l~~~~~~~~~E~~~Y~~fL~~l~~~~~~~----~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~ 88 (314)
T PF04111_consen 14 LDKQLEQAEKERDTYQEFLKKLEEESDSE----EDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELE 88 (314)
T ss_dssp ----------------------------H----H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555444444211100 0112233344444444444444444444444444444444444444
No 133
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=71.12 E-value=1.6e+02 Score=31.94 Aligned_cols=43 Identities=7% Similarity=0.104 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHhHHHHHHHhh
Q 007324 545 ELEKRYRELTDLLY-YKQTQLETMASEKAAAEFQLEKEMNRLQE 587 (608)
Q Consensus 545 ELE~RlreLTE~Ly-qKQTqLEaLatEKaAl~fQLER~eqq~k~ 587 (608)
+++.|+.++-.-.. .=+.+|..+-++.+.+..+|+....++..
T Consensus 273 ~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~a~~~l~~ 316 (457)
T TIGR01000 273 SQNSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKSLKEDSQK 316 (457)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34555555433222 23445555555555666666655555543
No 134
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=70.78 E-value=1.2e+02 Score=30.23 Aligned_cols=71 Identities=18% Similarity=0.296 Sum_probs=41.4
Q ss_pred HHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007324 499 EVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMAS 569 (608)
Q Consensus 499 ev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd~~~~Sr~s~~ELE~RlreLTE~LyqKQTqLEaLat 569 (608)
++..++-.....+.....+..+|..+..=...+=+|+..-+..-..=||++|..|++.|=.|..||..+-+
T Consensus 101 ~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~ 171 (201)
T PF13851_consen 101 ELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLA 171 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444444444444444444333344577999999999999999999876544
No 135
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=70.59 E-value=1.5e+02 Score=31.41 Aligned_cols=196 Identities=12% Similarity=0.125 Sum_probs=94.1
Q ss_pred hHHHHHHHhhhhhhhhhhhhhhhHhHHHHHHHHHHH--hHH-------HHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhc
Q 007324 270 KEARLARVCAGLSSRLQEYKSENAQLEELLVAEREL--SRS-------YEARIKQLEQELSVYKSEVTKVESNLAEALAA 340 (608)
Q Consensus 270 ke~rL~rvc~~ls~rL~~lr~EN~QLEeLLr~E~~~--~~S-------~~~r~k~lQ~ELs~ar~~v~k~EsdlteALAA 340 (608)
+-....++...+..+|..++.+....|.-|..=... +.+ ..+++.++...|..++.+....+..+... .
T Consensus 165 ~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~--~ 242 (444)
T TIGR03017 165 KVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQAQVMDASSKEGGS--S 242 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--C
Confidence 444455667777777777777777766666532222 111 12445555555555544433222111100 0
Q ss_pred ccchhHHHHHHHHHHHHHHHhhHhHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh-HH--HHH-HH
Q 007324 341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAH-NA--TKM-AA 416 (608)
Q Consensus 341 KdSqLavL~vrldeadq~l~~~e~~La~LQ~e~~RImqdh~~~e~q~lqaLREeLa~AE~rL~~Eq~ah-~A--tr~-aa 416 (608)
....+..+ ..+..+......|..++.+...+...-.+ .+-.|..|+.+++..+..+..|-..- .. ... ..
T Consensus 243 ~~~~~~~~-----~~~~~i~~l~~~l~~le~~l~~l~~~y~~-~hP~v~~l~~~i~~l~~~l~~e~~~~~~~~~~~~~~~ 316 (444)
T TIGR03017 243 GKDALPEV-----IANPIIQNLKTDIARAESKLAELSQRLGP-NHPQYKRAQAEINSLKSQLNAEIKKVTSSVGTNSRIL 316 (444)
T ss_pred Ccccchhh-----hcChHHHHHHHHHHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00001110 00111222233333333333333332222 33456678888888888887664331 10 011 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007324 417 MEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLK 477 (608)
Q Consensus 417 mERE~elE~qlAeastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka~ 477 (608)
-.++..|+.++.+.-..+ ..+.........|+.++..++.....+-+.+.+.+....
T Consensus 317 ~~~~~~l~~~l~~~~~~~----~~l~~~~~~~~~L~r~~~~~~~~y~~ll~r~~e~~l~~~ 373 (444)
T TIGR03017 317 KQREAELREALENQKAKV----LELNRQRDEMSVLQRDVENAQRAYDAAMQRYTQTRIEAQ 373 (444)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 233344444443322221 122333445677888888888888888888888776543
No 136
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=70.42 E-value=1.4e+02 Score=31.77 Aligned_cols=57 Identities=18% Similarity=0.315 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 007324 427 AAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKS 483 (608)
Q Consensus 427 lAeastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka~Ril~gs 483 (608)
+...-.-|...+..+.+-+.|+.+.-.++.-++-.-..+...+..++.|+.+-.++|
T Consensus 209 Le~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~~~s 265 (269)
T PF05278_consen 209 LEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKFHGKS 265 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 444455667778888888888888888888888888889999999999998877654
No 137
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=69.54 E-value=2.5e+02 Score=33.64 Aligned_cols=190 Identities=17% Similarity=0.187 Sum_probs=92.1
Q ss_pred hhhhhhhhhhhhHhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhh---hhhHHHHHhcccchhHHHHHH------
Q 007324 281 LSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKV---ESNLAEALAAKNSEIETLVSS------ 351 (608)
Q Consensus 281 ls~rL~~lr~EN~QLEeLLr~E~~~~~S~~~r~k~lQ~ELs~ar~~v~k~---EsdlteALAAKdSqLavL~vr------ 351 (608)
.+..|..+.+..-.|--.|.+++..|..+...-..+..-.-.-..-+..+ +..|.. +....+.|..--..
T Consensus 500 ~s~eL~~avskIsEfv~~LekeVh~C~DLLsgkadLE~fieE~s~tLdwIls~~~SLqD-v~s~~sEIK~~f~~~ss~e~ 578 (769)
T PF05911_consen 500 ISQELNVAVSKISEFVLVLEKEVHVCQDLLSGKADLERFIEEFSLTLDWILSNCFSLQD-VSSMRSEIKKNFDGDSSSEA 578 (769)
T ss_pred hcccHHHHHHhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHccchHHH-HHHHHHHHHHhhhhcccccc
Confidence 44555555555555566677777776665544333333222222222322 333333 12222222211111
Q ss_pred -----HHHHHHHHHhhHhHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 007324 352 -----IDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHR 426 (608)
Q Consensus 352 -----ldeadq~l~~~e~~La~LQ~e~~RImqdh~~~e~q~lqaLREeLa~AE~rL~~Eq~ah~Atr~aamERE~elE~q 426 (608)
.+............|+.+..++.-|.-.- ..-++.++.++.+|.++|..++.=+.-=..++-+... +|.|
T Consensus 579 E~~~~dea~~~~~~el~eelE~le~eK~~Le~~L-~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~----~E~q 653 (769)
T PF05911_consen 579 EINSEDEADTSEKKELEEELEKLESEKEELEMEL-ASCQDQLESLKNQLKESEQKLEELQSELESAKESNSL----AETQ 653 (769)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence 12222333444555666655554433221 1246778889999999998875444332344444444 4444
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007324 427 AAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARL 476 (608)
Q Consensus 427 lAeastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka 476 (608)
+-.+......++-++.+-...+..+..++..|+.+++.-++--.|+.++.
T Consensus 654 l~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc 703 (769)
T PF05911_consen 654 LKAMKESYESLETRLKDLEAEAEELQSKISSLEEELEKERALSEELEAKC 703 (769)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHH
Confidence 43333333334444444455555666666666666555555555544443
No 138
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=69.50 E-value=74 Score=35.01 Aligned_cols=35 Identities=26% Similarity=0.428 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHH
Q 007324 495 AWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMA 529 (608)
Q Consensus 495 ~~reev~~areq~~~~e~a~qe~~ae~q~~e~El~ 529 (608)
...+++..++...++++..+.+++.++++++.+|.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~ 169 (525)
T TIGR02231 135 FNGSEIERLLTEDREAERRIRELEKQLSELQNELN 169 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555544444444444444433
No 139
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=69.39 E-value=1.1e+02 Score=32.98 Aligned_cols=27 Identities=7% Similarity=0.089 Sum_probs=22.8
Q ss_pred CCCCCcccCCCCCccccCCCCCCCCCc
Q 007324 150 ATPNGEILNENDSDVHLNHPPSPLPPK 176 (608)
Q Consensus 150 ~t~nGe~~ne~~sd~~~~~p~p~lp~k 176 (608)
.-+||+|.|+.+.-+.-.-|.|++|.-
T Consensus 26 ~~s~~dl~d~e~d~~~s~~~A~~~~tG 52 (330)
T KOG2991|consen 26 RRSFGDLEDDEDDIFGSTTVAPGVRTG 52 (330)
T ss_pred hhhccCccccccccccCCCCCCCCccc
Confidence 678999999999888888888877753
No 140
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=68.84 E-value=77 Score=29.29 Aligned_cols=85 Identities=28% Similarity=0.329 Sum_probs=45.7
Q ss_pred hhhHHHHHHHhhhhhhhhhhhhhhhHhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHH
Q 007324 268 QSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIET 347 (608)
Q Consensus 268 ~ske~rL~rvc~~ls~rL~~lr~EN~QLEeLLr~E~~~~~S~~~r~k~lQ~ELs~ar~~v~k~EsdlteALAAKdSqLav 347 (608)
.+-..+|..-...|..++..+.-++..++.=.++--....++...++.+.+|+.+.+..+........--+--|+-++..
T Consensus 65 ~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~k 144 (151)
T PF11559_consen 65 RSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEK 144 (151)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555444444444444556666666666666666555555555555555555555555
Q ss_pred HHHHH
Q 007324 348 LVSSI 352 (608)
Q Consensus 348 L~vrl 352 (608)
|+.+|
T Consensus 145 Lk~rL 149 (151)
T PF11559_consen 145 LKERL 149 (151)
T ss_pred HHHHh
Confidence 55554
No 141
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=68.49 E-value=1.3e+02 Score=35.00 Aligned_cols=112 Identities=17% Similarity=0.119 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHH
Q 007324 410 NATKMAAMEREVELEHRAAEASMALARIQRIADE-RTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEAN 488 (608)
Q Consensus 410 ~Atr~aamERE~elE~qlAeastAL~~~QR~~~E-~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka~Ril~gs~e~Ag 488 (608)
++.+++...+-..|..++.+.... +++.+.. -.+-+..++.++.++++.+++|..+.++.+.-+..-.+---.==.
T Consensus 317 ~~e~~~l~~eaq~l~~~L~~~~~e---~~~~~~~~s~~~al~~ele~~~l~A~l~~L~se~q~L~~~~~~r~e~~~~Lq~ 393 (632)
T PF14817_consen 317 LAEEDALNKEAQALSQRLQRLLEE---IERRLSGSSEREALALELEVAGLKASLNALRSECQRLKEAAAERQEALRSLQA 393 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555554 3433333 334455788899999999999999999877665433211000001
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHH
Q 007324 489 QAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKM 524 (608)
Q Consensus 489 qv~qle~~reev~~areq~~~~e~a~qe~~ae~q~~ 524 (608)
.-..+..|+..+...+++|+.....=...+..+...
T Consensus 394 K~q~I~~frqlv~e~QeqIr~LiK~Nsaakt~L~q~ 429 (632)
T PF14817_consen 394 KWQRILDFRQLVSEKQEQIRALIKGNSAAKTQLEQS 429 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhC
Confidence 112345677777777778887776666664443333
No 142
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=67.63 E-value=1e+02 Score=28.45 Aligned_cols=61 Identities=21% Similarity=0.254 Sum_probs=34.7
Q ss_pred hHHHHHHHhhhhhhhhhhhhhhhHhHHHHHHHHHHH---hHHHHHHHHHHHHHHhhhhhhhhhh
Q 007324 270 KEARLARVCAGLSSRLQEYKSENAQLEELLVAEREL---SRSYEARIKQLEQELSVYKSEVTKV 330 (608)
Q Consensus 270 ke~rL~rvc~~ls~rL~~lr~EN~QLEeLLr~E~~~---~~S~~~r~k~lQ~ELs~ar~~v~k~ 330 (608)
......+||.-+..=|...+-...+.|.|...-..+ +..+...+..|+..+..+..++..+
T Consensus 29 ~~~~~~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~ 92 (151)
T PF11559_consen 29 SEDNDVRVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASA 92 (151)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888877777777776666666665543333 3333444555555554444444433
No 143
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=67.31 E-value=2.6e+02 Score=33.96 Aligned_cols=44 Identities=32% Similarity=0.387 Sum_probs=33.3
Q ss_pred HhhhhHHHHhhhhhcccCCCC----CCCCCCCcchhhhhchHHHhhhh
Q 007324 15 VDRRAKLVVNELADEQSDFQT----PASNGQGSQAKKIKSRIKAQRRH 58 (608)
Q Consensus 15 VDRRAK~V~~ELsdEqsd~Q~----paSngQgsQ~Kk~ksk~Ka~k~l 58 (608)
.||=|-|.-.=|--|.+.+-+ +-+|+..=.+|+-.+||||.+|+
T Consensus 12 LDrCAsLL~dILrnE~sGsE~~yse~r~nsrplegK~~~~KKKG~~Kh 59 (861)
T PF15254_consen 12 LDRCASLLRDILRNEDSGSETVYSENRSNSRPLEGKRNGSKKKGPEKH 59 (861)
T ss_pred hHHHHHHHHHhhhcccCCCcccccccccCCCcCCcccccccCCCCccc
Confidence 578788877777777774322 24777777888888999999998
No 144
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=67.05 E-value=29 Score=29.26 Aligned_cols=44 Identities=25% Similarity=0.403 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 007324 494 QAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEH 537 (608)
Q Consensus 494 e~~reev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd~~~ 537 (608)
+.+++|+..++...-.++..+++.+.+...+..||.+++.+++-
T Consensus 14 Q~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 14 QAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999998874
No 145
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=66.40 E-value=1.5e+02 Score=29.89 Aligned_cols=24 Identities=8% Similarity=0.008 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 007324 452 EQKVAMLEVECATLQQELQDMEAR 475 (608)
Q Consensus 452 eqqv~~lea~~esl~QELqDyk~k 475 (608)
+.++..+++.+..++.++..|+.-
T Consensus 114 ~~~~~~a~~~l~~a~~~~~r~~~L 137 (334)
T TIGR00998 114 KIKLEQAREKLLQAELDLRRRVPL 137 (334)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Confidence 334444444444444455554433
No 146
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=66.37 E-value=42 Score=33.09 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHH
Q 007324 433 ALARIQRIADERTAKAGELEQKV 455 (608)
Q Consensus 433 AL~~~QR~~~E~k~ra~eLeqqv 455 (608)
.+.++|.++.+=++||.+|++++
T Consensus 17 Lv~~LQ~KV~qYr~rc~ele~~l 39 (182)
T PF15035_consen 17 LVQRLQAKVLQYRKRCAELEQQL 39 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44558999999999999999988
No 147
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=66.37 E-value=2.7e+02 Score=32.85 Aligned_cols=78 Identities=19% Similarity=0.371 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007324 492 QMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHY--SREEHMELEKRYRELTDLLYYKQTQLETMAS 569 (608)
Q Consensus 492 qle~~reev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd~~~~--Sr~s~~ELE~RlreLTE~LyqKQTqLEaLat 569 (608)
.+..+.+.++.++..+..++..+.+++++..+++.++++++++++.- -+-.-..++++...|+--|.-|-++.|.|..
T Consensus 423 ~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~ 502 (652)
T COG2433 423 RIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELER 502 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778889999999999999999999999999999999999998822 1223455777888887777776666665443
No 148
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=65.50 E-value=96 Score=31.06 Aligned_cols=81 Identities=26% Similarity=0.298 Sum_probs=57.3
Q ss_pred HHHHHHHHhhhhhhhhhhh---hhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHhhhhhhhhhhhhhhh---hH
Q 007324 313 IKQLEQELSVYKSEVTKVE---SNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTE---TR 386 (608)
Q Consensus 313 ~k~lQ~ELs~ar~~v~k~E---sdlteALAAKdSqLavL~vrldeadq~l~~~e~~La~LQ~e~~RImqdh~~~e---~q 386 (608)
.++....-..++.++++|. ..|..-+..-+.+++.|++..+.....+...+..+++|+..++.|-.-+..-. .+
T Consensus 30 ~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~ 109 (251)
T PF11932_consen 30 QQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQ 109 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344555667773 66777777778899999999999999999999999999888887765544443 45
Q ss_pred HHHHHHH
Q 007324 387 MIQALRE 393 (608)
Q Consensus 387 ~lqaLRE 393 (608)
|++.|..
T Consensus 110 m~~~L~~ 116 (251)
T PF11932_consen 110 MIDELEQ 116 (251)
T ss_pred HHHHHHH
Confidence 5555544
No 149
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=65.45 E-value=2.1e+02 Score=31.15 Aligned_cols=84 Identities=19% Similarity=0.275 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 007324 388 IQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQ 467 (608)
Q Consensus 388 lqaLREeLa~AE~rL~~Eq~ah~Atr~aamERE~elE~qlAeastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~Q 467 (608)
+.-|..+++.+-++|..-++.++.+--.-.+ +-+.|++-+.-|..+....+|+-.+..+- --+...|..+..|++
T Consensus 268 le~l~~eYr~~~~~ls~~~~~y~~~s~~V~~----~t~~L~~IseeLe~vK~emeerg~~mtD~-sPlv~IKqAl~kLk~ 342 (359)
T PF10498_consen 268 LEPLIQEYRSAQDELSEVQEKYKQASEGVSE----RTRELAEISEELEQVKQEMEERGSSMTDG-SPLVKIKQALTKLKQ 342 (359)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH----HHHHHHHHHHHHHHHHHHHHHhcCCCCCC-CHHHHHHHHHHHHHH
Confidence 4444445666666665555554444333344 55668888888888888888888888776 345556788899999
Q ss_pred HHHHHHHHH
Q 007324 468 ELQDMEARL 476 (608)
Q Consensus 468 ELqDyk~ka 476 (608)
|+..|..+.
T Consensus 343 EI~qMdvrI 351 (359)
T PF10498_consen 343 EIKQMDVRI 351 (359)
T ss_pred HHHHhhhhh
Confidence 999998764
No 150
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=64.62 E-value=2.2 Score=47.74 Aligned_cols=65 Identities=23% Similarity=0.384 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 007324 385 TRMIQALREELASVERRAEEERAAH------NATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGEL 451 (608)
Q Consensus 385 ~q~lqaLREeLa~AE~rL~~Eq~ah------~Atr~aamERE~elE~qlAeastAL~~~QR~~~E~k~ra~eL 451 (608)
..+|.--+.||.+-|+||++=++-+ ..+|+-.||-|.+=||. ++..+|..=||.++..-+|+.-|
T Consensus 407 ~Kll~qyq~RLedSE~RLr~QQ~eKd~qmksII~RL~~vEeELrre~~--~m~~~~~~kqrii~aQ~~~i~~L 477 (495)
T PF12004_consen 407 QKLLLQYQARLEDSEERLRRQQEEKDSQMKSIISRLMAVEEELRREHA--EMQAVLDHKQRIIDAQEKRIAAL 477 (495)
T ss_dssp -------------------------------------------------------------------------
T ss_pred HHHHHHHHHhhhhhHHHHHHHhhhhHHHHHHHHhhhhhhhhhhhhhHH--HHhcccccchHHHHHhhhhcccc
Confidence 3445566778888888887766654 78899999866655554 55555555777777777765544
No 151
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=64.14 E-value=1.1e+02 Score=27.27 Aligned_cols=92 Identities=13% Similarity=0.182 Sum_probs=45.9
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHH
Q 007324 437 IQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSS 516 (608)
Q Consensus 437 ~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka~Ril~gs~e~Agqv~qle~~reev~~areq~~~~e~a~qe 516 (608)
.++..+..........+.+...+..+..|.....+|........ +.|-++. ++..++.-+..+...+..+...+..
T Consensus 11 r~~~ed~a~~~la~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~-~~g~~~~---~l~~~~~f~~~l~~~i~~q~~~l~~ 86 (141)
T TIGR02473 11 REKEEEQAKLELAKAQAEFERLETQLQQLIKYREEYEQQALEKV-GAGTSAL---ELSNYQRFIRQLDQRIQQQQQELAL 86 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555556666667777777777765443222 1111222 2333344455555555555555555
Q ss_pred HHHHHHHHHHHHHHHH
Q 007324 517 LEAEVQKMRVEMAAMK 532 (608)
Q Consensus 517 ~~ae~q~~e~El~~~K 532 (608)
++.++..++..+-...
T Consensus 87 ~~~~~e~~r~~l~~a~ 102 (141)
T TIGR02473 87 LQQEVEAKRERLLEAR 102 (141)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5455544444443333
No 152
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=62.88 E-value=1.5e+02 Score=28.58 Aligned_cols=80 Identities=20% Similarity=0.280 Sum_probs=43.9
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHH
Q 007324 440 IADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEA 519 (608)
Q Consensus 440 ~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka~Ril~gs~e~Agqv~qle~~reev~~areq~~~~e~a~qe~~a 519 (608)
.+.+-.++.+-|+.+|..+++.++.....+..+.. +.+..+.++..+..++......+..+..
T Consensus 11 kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~-----------------daEn~k~eie~L~~el~~lt~el~~L~~ 73 (140)
T PF10473_consen 11 KLKESESEKDSLEDHVESLERELEMSQENKECLIL-----------------DAENSKAEIETLEEELEELTSELNQLEL 73 (140)
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666777777777777666655544332 2334445555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHh
Q 007324 520 EVQKMRVEMAAMKRDAE 536 (608)
Q Consensus 520 e~q~~e~El~~~Kqd~~ 536 (608)
++..++.|-.-+-+.++
T Consensus 74 EL~~l~sEk~~L~k~lq 90 (140)
T PF10473_consen 74 ELDTLRSEKENLDKELQ 90 (140)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555444444444
No 153
>PRK10884 SH3 domain-containing protein; Provisional
Probab=62.54 E-value=1.2e+02 Score=30.55 Aligned_cols=77 Identities=13% Similarity=0.174 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 007324 496 WQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAE 575 (608)
Q Consensus 496 ~reev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd~~~~Sr~s~~ELE~RlreLTE~LyqKQTqLEaLatEKaAl~ 575 (608)
.+..+..++.++.+++..+.+...+.. ...+.|++.+.. +.+.-.+|++++.+|.+-|..-|+.++.|-++-..+.
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~~~~~---~~~~~l~~~~~~-~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNIDNTWN---QRTAEMQQKVAQ-SDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444433322 222223333332 3334466999999997777777777666655554444
Q ss_pred H
Q 007324 576 F 576 (608)
Q Consensus 576 f 576 (608)
-
T Consensus 167 ~ 167 (206)
T PRK10884 167 R 167 (206)
T ss_pred H
Confidence 3
No 154
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=62.45 E-value=2.3e+02 Score=30.69 Aligned_cols=111 Identities=19% Similarity=0.239 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHhhhhhhhhhhhhhhhh
Q 007324 306 SRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTET 385 (608)
Q Consensus 306 ~~S~~~r~k~lQ~ELs~ar~~v~k~EsdlteALAAKdSqLavL~vrldeadq~l~~~e~~La~LQ~e~~RImqdh~~~e~ 385 (608)
...|..+|..|..|-.-.-..+.+-|.-||..|..|=.+|-.-++.|.. ++-.-.+-.+.-|+.-..++..+-..- .
T Consensus 79 sN~LlKkl~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~--~Le~EqE~~V~kL~k~i~~Le~e~~~~-q 155 (310)
T PF09755_consen 79 SNTLLKKLQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELEN--QLEQEQEYLVNKLQKKIERLEKEKSAK-Q 155 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHh-H
Confidence 4455556666666554444455666788888777766665555553321 111112222333333333333222111 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHH
Q 007324 386 RMIQALREELASVERRAEEERAAH---NATKMAAMER 419 (608)
Q Consensus 386 q~lqaLREeLa~AE~rL~~Eq~ah---~Atr~aamER 419 (608)
.-+.-||.+--+-|.+|+-||++- ---||..++.
T Consensus 156 ~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~ 192 (310)
T PF09755_consen 156 EELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEA 192 (310)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233455555555777777777762 3345555553
No 155
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=62.43 E-value=2.1e+02 Score=30.26 Aligned_cols=59 Identities=14% Similarity=0.255 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHhhhHHHHHHHHhHHHHHHHhhhhhhhhhhccCCceeE
Q 007324 544 MELEKRYRELTD---LLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQVCQRVLHSTPIEVV 603 (608)
Q Consensus 544 ~ELE~RlreLTE---~LyqKQTqLEaLatEKaAl~fQLER~eqq~k~~q~~~~~~~~~~~~~~ 603 (608)
.+|+.++.++.. .|-.++.+++.|-.|-....-.++.+.++++++..+... -..++.|+
T Consensus 321 ~~l~~~l~~~~~~~~~l~~~~~~~~~L~r~~~~~~~~y~~ll~r~~e~~l~~~~-~~~~~~Vi 382 (444)
T TIGR03017 321 AELREALENQKAKVLELNRQRDEMSVLQRDVENAQRAYDAAMQRYTQTRIEAQS-NQTDISIL 382 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCceEee
Confidence 344444443332 455667788889888888888999999999998877554 23445443
No 156
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=62.10 E-value=1.2e+02 Score=28.50 Aligned_cols=92 Identities=20% Similarity=0.261 Sum_probs=51.7
Q ss_pred HhhhhhhhhhhhhhhhHhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHHH
Q 007324 277 VCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALK 356 (608)
Q Consensus 277 vc~~ls~rL~~lr~EN~QLEeLLr~E~~~~~S~~~r~k~lQ~ELs~ar~~v~k~EsdlteALAAKdSqLavL~vrldead 356 (608)
++..|++.|-.+.+|.. .|+.+ ++.+.+.-..+.+|+...-.+.+.+ ......+..-..++..|..||+.+=
T Consensus 17 ~ve~L~s~lr~~E~E~~----~l~~e---l~~l~~~r~~l~~Eiv~l~~~~e~~-~~~~~~~~~L~~el~~l~~ry~t~L 88 (120)
T PF12325_consen 17 LVERLQSQLRRLEGELA----SLQEE---LARLEAERDELREEIVKLMEENEEL-RALKKEVEELEQELEELQQRYQTLL 88 (120)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455554 22222 2233333444444444433333322 1223334445667888888999998
Q ss_pred HHHHhhHhHHHHHhhhhhhh
Q 007324 357 KQAALSEGNLASLQMNMESI 376 (608)
Q Consensus 357 q~l~~~e~~La~LQ~e~~RI 376 (608)
+.+.-+.+.+++|+.+..-+
T Consensus 89 ellGEK~E~veEL~~Dv~Dl 108 (120)
T PF12325_consen 89 ELLGEKSEEVEELRADVQDL 108 (120)
T ss_pred HHhcchHHHHHHHHHHHHHH
Confidence 99999999999998876543
No 157
>PRK09343 prefoldin subunit beta; Provisional
Probab=61.90 E-value=1.3e+02 Score=27.68 Aligned_cols=87 Identities=22% Similarity=0.301 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhh-------hh----hHHHHHHHHHHHHHHHHHH
Q 007324 492 QMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYS-------RE----EHMELEKRYRELTDLLYYK 560 (608)
Q Consensus 492 qle~~reev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd~~~~S-------r~----s~~ELE~RlreLTE~LyqK 560 (608)
+++.++.++..+..+....+..+. +.+..-.||..+.-|...|- ++ .-.+|++|+.-+.
T Consensus 15 ~~q~lq~~l~~~~~q~~~le~q~~----e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie------ 84 (121)
T PRK09343 15 QLQQLQQQLERLLQQKSQIDLELR----EINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELLE------ 84 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHHH------
Confidence 444444444444444444333332 23445667778877777772 12 2356666665555
Q ss_pred HHHHHHhhhHHHHHHHHhHHHHHHHhhhh
Q 007324 561 QTQLETMASEKAAAEFQLEKEMNRLQEVQ 589 (608)
Q Consensus 561 QTqLEaLatEKaAl~fQLER~eqq~k~~q 589 (608)
.-+.+|-.-+..++-+++.+..+|+++.
T Consensus 85 -~~ik~lekq~~~l~~~l~e~q~~l~~ll 112 (121)
T PRK09343 85 -LRSRTLEKQEKKLREKLKELQAKINEML 112 (121)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666666666666666666543
No 158
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=61.15 E-value=2e+02 Score=29.45 Aligned_cols=67 Identities=24% Similarity=0.348 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHhhhhhhh
Q 007324 306 SRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESI 376 (608)
Q Consensus 306 ~~S~~~r~k~lQ~ELs~ar~~v~k~EsdlteALAAKdSqLavL~vrldeadq~l~~~e~~La~LQ~e~~RI 376 (608)
+.+|.+.++++...|.....+ -.++..++-.|.-+|++....|+..+..+.....++..|..+...|
T Consensus 33 iv~Lr~ql~e~~~~l~~~~~~----~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~L 99 (202)
T PF06818_consen 33 IVSLRAQLRELRAELRNKESQ----IQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAEL 99 (202)
T ss_pred HHHHHHHHHHHHHHHHhhHHH----HHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHH
Confidence 677777777777776544222 3567778888999999999988888877666666665555444433
No 159
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=60.40 E-value=63 Score=27.78 Aligned_cols=57 Identities=28% Similarity=0.336 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007324 421 VELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLK 477 (608)
Q Consensus 421 ~elE~qlAeastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka~ 477 (608)
..||.++..++..++.+++.+.+-+.+-..|...-..++.+..-|+++-.....+.+
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~ 63 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLR 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358888888888888899999999988888888888888888888877666555444
No 160
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=60.29 E-value=1.9e+02 Score=31.49 Aligned_cols=96 Identities=13% Similarity=0.232 Sum_probs=68.1
Q ss_pred HHhHHHHHHHHHHHHHHhhhhhhhhhhh-------hhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHhhhhhhh
Q 007324 304 ELSRSYEARIKQLEQELSVYKSEVTKVE-------SNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESI 376 (608)
Q Consensus 304 ~~~~S~~~r~k~lQ~ELs~ar~~v~k~E-------sdlteALAAKdSqLavL~vrldeadq~l~~~e~~La~LQ~e~~RI 376 (608)
..+..+...++.++.++++.--++.+.| ..|..-......+|+.+..+|..+..-+..++..|+.+-.+.+.+
T Consensus 234 ~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~v 313 (359)
T PF10498_consen 234 SALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQV 313 (359)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3467777888889999998888888887 344444667777777777777777777777777777777777666
Q ss_pred hhhhhhh------------hhHHHHHHHHHHHHHH
Q 007324 377 MRNRELT------------ETRMIQALREELASVE 399 (608)
Q Consensus 377 mqdh~~~------------e~q~lqaLREeLa~AE 399 (608)
.++=.+. --++|..|+.++..-+
T Consensus 314 K~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMd 348 (359)
T PF10498_consen 314 KQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQMD 348 (359)
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 5544333 2567777777776544
No 161
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=60.21 E-value=3.6e+02 Score=32.09 Aligned_cols=24 Identities=38% Similarity=0.529 Sum_probs=11.0
Q ss_pred HHHHhhhhhhhhhhhhhhhHhHHH
Q 007324 274 LARVCAGLSSRLQEYKSENAQLEE 297 (608)
Q Consensus 274 L~rvc~~ls~rL~~lr~EN~QLEe 297 (608)
|..=...+..++..|.....++++
T Consensus 230 l~~e~e~l~~~~~el~~~~~~~~~ 253 (908)
T COG0419 230 LEQEIEALEERLAELEEEKERLEE 253 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444
No 162
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=59.29 E-value=3.2e+02 Score=31.26 Aligned_cols=79 Identities=22% Similarity=0.188 Sum_probs=38.0
Q ss_pred hhhhhhhHhH-------HHHHH-HHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHHHH
Q 007324 286 QEYKSENAQL-------EELLV-AERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKK 357 (608)
Q Consensus 286 ~~lr~EN~QL-------EeLLr-~E~~~~~S~~~r~k~lQ~ELs~ar~~v~k~EsdlteALAAKdSqLavL~vrldeadq 357 (608)
+.+|.||.|| ||++| .|.-.+-++..+-+.-.+-|- .++|.-+-+.|-+-+++-+|+.=.-+|-..-.
T Consensus 246 SrlkqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~----k~eReasle~Enlqmr~qqleeentelRs~~a 321 (502)
T KOG0982|consen 246 SRLKQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILI----KKEREASLEKENLQMRDQQLEEENTELRSLIA 321 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666665 44554 333335566555544443332 12333344444455555555554444444444
Q ss_pred HHHhhHhHHHH
Q 007324 358 QAALSEGNLAS 368 (608)
Q Consensus 358 ~l~~~e~~La~ 368 (608)
.+.+...+|+.
T Consensus 322 rlksl~dklae 332 (502)
T KOG0982|consen 322 RLKSLADKLAE 332 (502)
T ss_pred HHHHHHHHHhh
Confidence 44554444443
No 163
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=59.02 E-value=3.4e+02 Score=31.51 Aligned_cols=88 Identities=17% Similarity=0.294 Sum_probs=43.3
Q ss_pred HHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh---hhhhHHHHHH------------HHHHHHHHHHHHHH
Q 007324 498 DEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHY---SREEHMELEK------------RYRELTDLLYYKQT 562 (608)
Q Consensus 498 eev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd~~~~---Sr~s~~ELE~------------RlreLTE~LyqKQT 562 (608)
+++..++......+...+..-.+++.++.++..+..+++.. -++-..+||+ |..+++-..--=++
T Consensus 426 ~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~ 505 (594)
T PF05667_consen 426 EEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKE 505 (594)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHH
Confidence 44555555554444444445556666666666666666521 1112233432 33344443332235
Q ss_pred HHHHhhhHHHHHHHHhHHHHHHH
Q 007324 563 QLETMASEKAAAEFQLEKEMNRL 585 (608)
Q Consensus 563 qLEaLatEKaAl~fQLER~eqq~ 585 (608)
.++..-.+=..++-.+--+.-++
T Consensus 506 eI~KIl~DTr~lQkeiN~l~gkL 528 (594)
T PF05667_consen 506 EIEKILSDTRELQKEINSLTGKL 528 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666665554444433
No 164
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=58.65 E-value=93 Score=27.32 Aligned_cols=69 Identities=22% Similarity=0.268 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 007324 456 AMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDA 535 (608)
Q Consensus 456 ~~lea~~esl~QELqDyk~ka~Ril~gs~e~Agqv~qle~~reev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd~ 535 (608)
-.++.+.+++.+++.-|+. .+--.+. .-.+|+.+|+.||.-|-.+..+.+.. ++.+ |.|+.+||.++
T Consensus 7 d~ir~Ef~~~~~e~~~~k~-~~~e~e~--ki~~Qi~Em~~ir~~v~eLE~~h~km---K~~Y-------EeEI~rLr~eL 73 (79)
T PF08581_consen 7 DAIRQEFENLSQEANSYKH-QKDEYEH--KINSQIQEMQQIRQKVYELEQAHRKM---KQQY-------EEEIARLRREL 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-hHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH-------HHHHHHHHHHH
Confidence 3456666666666665554 1111111 13477888888888888777665554 4445 78888888877
Q ss_pred hh
Q 007324 536 EH 537 (608)
Q Consensus 536 ~~ 537 (608)
+.
T Consensus 74 e~ 75 (79)
T PF08581_consen 74 EQ 75 (79)
T ss_dssp CH
T ss_pred Hh
Confidence 63
No 165
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=58.56 E-value=7 Score=34.53 Aligned_cols=99 Identities=28% Similarity=0.392 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHh
Q 007324 427 AAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQG 506 (608)
Q Consensus 427 lAeastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka~Ril~gs~e~Agqv~qle~~reev~~areq 506 (608)
|.....-+..+.+...+-+.++.+|+.++..++..-..+++-|..+...+..+.......|..++. . .
T Consensus 27 l~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~aq~~a~~~~~~A~~eA~~i~~---------~---A 94 (131)
T PF05103_consen 27 LDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQAQETADEIKAEAEEEAEEIIE---------E---A 94 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCT----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH---------H---H
Confidence 444444555566666666666666666666666666666666666555555555544444543332 1 1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 007324 507 QRDAENKLSSLEAEVQKMRVEMAAMKRDAEH 537 (608)
Q Consensus 507 ~~~~e~a~qe~~ae~q~~e~El~~~Kqd~~~ 537 (608)
...+..-+....+++..+..+++.+|++...
T Consensus 95 ~~~a~~i~~~A~~~~~~l~~~~~~lk~~~~~ 125 (131)
T PF05103_consen 95 QKEAEEIIEEARAEAERLREEIEELKRQAEQ 125 (131)
T ss_dssp -------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122223334555566667777777776654
No 166
>PF07321 YscO: Type III secretion protein YscO; InterPro: IPR009929 This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis [].
Probab=58.25 E-value=1.8e+02 Score=28.15 Aligned_cols=83 Identities=17% Similarity=0.372 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCC-CchhHHHHH---HHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHH
Q 007324 454 KVAMLEVECATLQQELQDMEARLKRGQKK-SPEEANQAI---QMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMA 529 (608)
Q Consensus 454 qv~~lea~~esl~QELqDyk~ka~Ril~g-s~e~Agqv~---qle~~reev~~areq~~~~e~a~qe~~ae~q~~e~El~ 529 (608)
.+..+...+....+.|.||..-..+--.. -+.-.|+++ .++.|+.+|..|+.+.+..+..+..+...+...+.-+.
T Consensus 26 ~l~~a~~~~~~a~~~l~dyr~wr~~ee~rly~~~~~~~v~~kele~~~~qv~~Lr~~e~~le~~~~~a~~~~~~e~~~l~ 105 (152)
T PF07321_consen 26 RLQEARAALQQAEQELADYRQWRQREEERLYAEIQGKVVSLKELEKWQQQVASLREREAELEQQLAEAEEQLEQERQALE 105 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666667777777776644332111 112235555 56889999999998888888777776555555555555
Q ss_pred HHHHHHh
Q 007324 530 AMKRDAE 536 (608)
Q Consensus 530 ~~Kqd~~ 536 (608)
..++.+.
T Consensus 106 ~a~~~~~ 112 (152)
T PF07321_consen 106 EARKQLQ 112 (152)
T ss_pred HHHHHHH
Confidence 5555444
No 167
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.05 E-value=4.3e+02 Score=32.36 Aligned_cols=54 Identities=22% Similarity=0.310 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007324 418 EREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDM 472 (608)
Q Consensus 418 ERE~elE~qlAeastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDy 472 (608)
++..+||+ +.-...++..+++.++....++..|+-+++..=.+|..++-.|.-.
T Consensus 678 el~~~lE~-L~~t~~~~~~~~~~l~aaQT~~~vler~~~~~~~e~~~~k~~lkrA 731 (1104)
T COG4913 678 ELQARLER-LTHTQSDIAIAKAALDAAQTRQKVLERQYQQEVTECAGLKKDLKRA 731 (1104)
T ss_pred HHHHHHHH-hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455553 4445566677888999999999999999999888898888776653
No 168
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=57.99 E-value=3.8e+02 Score=31.69 Aligned_cols=180 Identities=18% Similarity=0.277 Sum_probs=93.6
Q ss_pred chhHHHHHHHHHHHHHHHhhHh-HHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 007324 343 SEIETLVSSIDALKKQAALSEG-NLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREV 421 (608)
Q Consensus 343 SqLavL~vrldeadq~l~~~e~-~La~LQ~e~~RImqdh~~~e~q~lqaLREeLa~AE~rL~~Eq~ah~Atr~aamERE~ 421 (608)
..+..|+.++.+-.+++...-+ .....+....+=..++..+=..+-+.+.+.+..+|.....=+.++-+++...-+
T Consensus 145 ~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~--- 221 (629)
T KOG0963|consen 145 VTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFD--- 221 (629)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH---
Confidence 3344445555544444333222 222333333333334444445566788888888888887767777676666555
Q ss_pred HHHHH--------HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHH-H
Q 007324 422 ELEHR--------AAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAI-Q 492 (608)
Q Consensus 422 elE~q--------lAeastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka~Ril~gs~e~Agqv~-q 492 (608)
++.. .++-...| ......++.+.-|+.+|+.|+++|+.......-...-.....+.++ +
T Consensus 222 -~~s~~dee~~~k~aev~lim-----------~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~ 289 (629)
T KOG0963|consen 222 -LKSKYDEEVAAKAAEVSLIM-----------TELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQ 289 (629)
T ss_pred -HHHhhhhhhHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhH
Confidence 3322 22222221 2334455666667777777777777665555544212223334433 2
Q ss_pred H----HHHHHHHHHH----HHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 007324 493 M----QAWQDEVERA----RQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEH 537 (608)
Q Consensus 493 l----e~~reev~~a----req~~~~e~a~qe~~ae~q~~e~El~~~Kqd~~~ 537 (608)
+ ..+-..++++ ++-.....+.++.+..++.+...+++.|+..+.-
T Consensus 290 kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~ 342 (629)
T KOG0963|consen 290 KDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNS 342 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2 1122222222 2223334455666777777777778888777773
No 169
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=57.17 E-value=2.2e+02 Score=28.62 Aligned_cols=127 Identities=20% Similarity=0.318 Sum_probs=81.7
Q ss_pred hhhhhhhhhhhhhhHhHHHHHHHHHHH--------hHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHH
Q 007324 279 AGLSSRLQEYKSENAQLEELLVAEREL--------SRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVS 350 (608)
Q Consensus 279 ~~ls~rL~~lr~EN~QLEeLLr~E~~~--------~~S~~~r~k~lQ~ELs~ar~~v~k~EsdlteALAAKdSqLavL~v 350 (608)
.+++..++.|-.....|+..+..|+.. +.++...+..|+..+..-|......|..+..-|. ....
T Consensus 88 ~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~krl~-------e~~~ 160 (247)
T PF06705_consen 88 EQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERNEREEREENILKRLE-------EEEN 160 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH
Confidence 344444444445555555555555554 4455555666666665555544444555544332 2222
Q ss_pred HH-HHHHHHHHhhHhHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 007324 351 SI-DALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNAT 412 (608)
Q Consensus 351 rl-deadq~l~~~e~~La~LQ~e~~RImqdh~~~e~q~lqaLREeLa~AE~rL~~Eq~ah~At 412 (608)
++ +..+..-..++..+..|..+...++.....+..+.-..+.++++.--..|..|..+++.+
T Consensus 161 ~l~~~i~~Ek~~Re~~~~~l~~~le~~~~~~~~~~e~f~~~v~~Ei~~lk~~l~~e~~~R~~~ 223 (247)
T PF06705_consen 161 RLQEKIEKEKNTRESKLSELRSELEEVKRRREKGDEQFQNFVLEEIAALKNALALESQEREQS 223 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22 234566788899999999999999987777777777779999999999998887776544
No 170
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=56.94 E-value=5.2e+02 Score=32.92 Aligned_cols=83 Identities=16% Similarity=0.166 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 007324 496 WQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAE 575 (608)
Q Consensus 496 ~reev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd~~~~Sr~s~~ELE~RlreLTE~LyqKQTqLEaLatEKaAl~ 575 (608)
.++++...+.........+.+.+.+++.++.|+.-|..- |..+-++|-+|-..|...+|-++...++=.++.
T Consensus 477 ~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~--------~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k 548 (1293)
T KOG0996|consen 477 IREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSR--------HETGLKKVEELKGKLLASSESLKEKKTELDDLK 548 (1293)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666777777777777776665443 333344444444444444444444333333333
Q ss_pred HHhHHHHHHHh
Q 007324 576 FQLEKEMNRLQ 586 (608)
Q Consensus 576 fQLER~eqq~k 586 (608)
--|..+.+.++
T Consensus 549 ~~l~~~k~e~~ 559 (1293)
T KOG0996|consen 549 EELPSLKQELK 559 (1293)
T ss_pred HhhhhHHHHHH
Confidence 33333333333
No 171
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=56.59 E-value=1.1e+02 Score=26.74 Aligned_cols=71 Identities=18% Similarity=0.310 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHhhhhhhhh
Q 007324 306 SRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIM 377 (608)
Q Consensus 306 ~~S~~~r~k~lQ~ELs~ar~~v~k~EsdlteALAAKdSqLavL~vrldeadq~l~~~e~~La~LQ~e~~RIm 377 (608)
+..+-+.-+.++.++...|++....-..+..+..++ ...+.|+.+..+.+..+...+..+..++.++..++
T Consensus 31 i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~-~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l 101 (108)
T PF02403_consen 31 IIELDQERRELQQELEELRAERNELSKEIGKLKKAG-EDAEELKAEVKELKEEIKELEEQLKELEEELNELL 101 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT-CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556666666666666665555555555554 57888888888999999999999999888887765
No 172
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=56.24 E-value=2.5e+02 Score=32.09 Aligned_cols=56 Identities=30% Similarity=0.327 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Q 007324 487 ANQAIQMQAWQDEVERARQGQRDAENKL----SSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKR 549 (608)
Q Consensus 487 Agqv~qle~~reev~~areq~~~~e~a~----qe~~ae~q~~e~El~~~Kqd~~~~Sr~s~~ELE~R 549 (608)
++-..-++-+|.||+++|-..+.+.-.- ..+++|-..+|.|.+++ +|.-.-|||+|
T Consensus 249 ~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rl-------QrkL~~e~erR 308 (552)
T KOG2129|consen 249 AAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERL-------QRKLINELERR 308 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-------HHHHHHHHHHH
Confidence 3434445778899999998887765443 33555555555555554 45556678877
No 173
>PRK09343 prefoldin subunit beta; Provisional
Probab=56.01 E-value=1.6e+02 Score=27.02 Aligned_cols=52 Identities=15% Similarity=0.104 Sum_probs=45.9
Q ss_pred hhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHhhhhhhhhhhhhhh
Q 007324 332 SNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELT 383 (608)
Q Consensus 332 sdlteALAAKdSqLavL~vrldeadq~l~~~e~~La~LQ~e~~RImqdh~~~ 383 (608)
.|..+|..-=+..++.+..++....++....+..+..+|.....+++.+.-+
T Consensus 67 qd~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~~~~ 118 (121)
T PRK09343 67 VDKTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSKYYPQ 118 (121)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 7888888888889999999999999999999999999999999988876543
No 174
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=55.71 E-value=2.5e+02 Score=28.81 Aligned_cols=33 Identities=18% Similarity=0.332 Sum_probs=25.3
Q ss_pred HhcccchhHHHHHHHHHHHHHHHhhHhHHHHHh
Q 007324 338 LAAKNSEIETLVSSIDALKKQAALSEGNLASLQ 370 (608)
Q Consensus 338 LAAKdSqLavL~vrldeadq~l~~~e~~La~LQ 370 (608)
+.-|.++|+-||--|-++...+..+.+.+-+|.
T Consensus 5 vCqk~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr 37 (202)
T PF06818_consen 5 VCQKSGEISLLKQQLKESQAEVNQKDSEIVSLR 37 (202)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 456788899998888888888877777666663
No 175
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=54.42 E-value=66 Score=27.66 Aligned_cols=28 Identities=25% Similarity=0.224 Sum_probs=23.4
Q ss_pred hhHHHHHHHhhhhhhhhhhhhhhhHhHH
Q 007324 269 SKEARLARVCAGLSSRLQEYKSENAQLE 296 (608)
Q Consensus 269 ske~rL~rvc~~ls~rL~~lr~EN~QLE 296 (608)
.|...+.-+|+-|..++..|+-+|..|.
T Consensus 11 ~ki~~aveti~~Lq~e~eeLke~n~~L~ 38 (72)
T PF06005_consen 11 EKIQQAVETIALLQMENEELKEKNNELK 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 5778888889999999999999988555
No 176
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=54.10 E-value=3.6e+02 Score=30.21 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=18.6
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 007324 506 GQRDAENKLSSLEAEVQKMRVEMAAMK 532 (608)
Q Consensus 506 q~~~~e~a~qe~~ae~q~~e~El~~~K 532 (608)
+.......+.+-..|+|+++..|...-
T Consensus 356 ~~s~~~~k~~~ke~E~q~lr~~l~~~~ 382 (511)
T PF09787_consen 356 QKSPLQLKLKEKESEIQKLRNQLSARA 382 (511)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445556667888999999887644
No 177
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=54.06 E-value=2.6e+02 Score=28.62 Aligned_cols=24 Identities=13% Similarity=0.026 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 007324 456 AMLEVECATLQQELQDMEARLKRG 479 (608)
Q Consensus 456 ~~lea~~esl~QELqDyk~ka~Ri 479 (608)
..+++.++.++.+|..++....|.
T Consensus 110 ~~~~~~l~~ak~~l~~a~~~~~r~ 133 (331)
T PRK03598 110 AQARAAVKQAQAAYDYAQNFYNRQ 133 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443
No 178
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=53.96 E-value=1.2e+02 Score=25.76 Aligned_cols=79 Identities=18% Similarity=0.193 Sum_probs=50.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhhhhhhhhh--------hhhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHhhh
Q 007324 301 AERELSRSYEARIKQLEQELSVYKSEVTKV--------ESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMN 372 (608)
Q Consensus 301 ~E~~~~~S~~~r~k~lQ~ELs~ar~~v~k~--------EsdlteALAAKdSqLavL~vrldeadq~l~~~e~~La~LQ~e 372 (608)
.....+..-..++..+-.||...-....-| ..+..+++..=...++.+...+......+...+..+..++..
T Consensus 19 ~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~ 98 (106)
T PF01920_consen 19 QQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKK 98 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444455666666676654443333 367777777777777888888888888888888888888777
Q ss_pred hhhhhhh
Q 007324 373 MESIMRN 379 (608)
Q Consensus 373 ~~RImqd 379 (608)
...++.+
T Consensus 99 l~~~~~~ 105 (106)
T PF01920_consen 99 LYELFGQ 105 (106)
T ss_dssp HHCCCS-
T ss_pred HHHHhcC
Confidence 6665544
No 179
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=53.83 E-value=2.5e+02 Score=28.24 Aligned_cols=41 Identities=22% Similarity=0.293 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 007324 495 AWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDA 535 (608)
Q Consensus 495 ~~reev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd~ 535 (608)
.|+.++..-++-+..+......+..++...+.+++.-|+.+
T Consensus 134 ~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~aA 174 (188)
T PF05335_consen 134 GAQQELAEKTQLLEAAKRRVEELQRQLQAARADYEKTKKAA 174 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555556666666666666666666544
No 180
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=53.55 E-value=3.1e+02 Score=29.33 Aligned_cols=24 Identities=13% Similarity=0.169 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 007324 452 EQKVAMLEVECATLQQELQDMEAR 475 (608)
Q Consensus 452 eqqv~~lea~~esl~QELqDyk~k 475 (608)
+.++..+++.+..++.++.-|+.-
T Consensus 126 ~a~l~~a~a~l~~a~~~~~R~~~L 149 (390)
T PRK15136 126 QANIELQKTALAQAQSDLNRRVPL 149 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555566666665555543
No 181
>PF15294 Leu_zip: Leucine zipper
Probab=52.18 E-value=2e+02 Score=30.72 Aligned_cols=85 Identities=18% Similarity=0.261 Sum_probs=47.5
Q ss_pred hhhcCCCCcchhhhHHHHhhHHHhhhhcch-----hhHHHHHHHhhh-----hhhhhhhhhhhhHhHHHHHHHHHHHhHH
Q 007324 239 ALKADDPPTKEQDQLDEAQGLLKTTISTGQ-----SKEARLARVCAG-----LSSRLQEYKSENAQLEELLVAERELSRS 308 (608)
Q Consensus 239 ~~KaD~sp~K~qdql~ea~~ll~~~~~~g~-----ske~rL~rvc~~-----ls~rL~~lr~EN~QLEeLLr~E~~~~~S 308 (608)
....|++..-...-|++.-.+=++..+++. ..-.+|.-+..+ |.++...|+.||+.|-+=|..=-..|.+
T Consensus 78 kl~~diselEn~eLLe~i~~~E~~~~~~~~~~~~~~~~~KL~pl~e~g~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~ 157 (278)
T PF15294_consen 78 KLQTDISELENRELLEQIAEFEKQEFTSSFKPNQETSKPKLEPLNESGGSELLNKEIDRLQEENEKLKERLKSLEKQATS 157 (278)
T ss_pred HhcccHHHHHHHHHHHHHHHHHHhhhcccCCccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666555555555555444444432 111257666666 9999999999999776654422222444
Q ss_pred HHHHHHHHHHHHhhh
Q 007324 309 YEARIKQLEQELSVY 323 (608)
Q Consensus 309 ~~~r~k~lQ~ELs~a 323 (608)
+...-..++..|+..
T Consensus 158 ~l~Ek~kl~~~L~~l 172 (278)
T PF15294_consen 158 ALDEKSKLEAQLKEL 172 (278)
T ss_pred HHHHHHHHHHHHHHH
Confidence 443334444444443
No 182
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=51.31 E-value=3e+02 Score=28.47 Aligned_cols=21 Identities=0% Similarity=0.139 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhh
Q 007324 309 YEARIKQLEQELSVYKSEVTK 329 (608)
Q Consensus 309 ~~~r~k~lQ~ELs~ar~~v~k 329 (608)
..+.++..+..+..++....+
T Consensus 119 ~~~~i~~a~~~l~~a~~~~~R 139 (346)
T PRK10476 119 ANEQVERARANAKLATRTLER 139 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444433333
No 183
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=50.99 E-value=1.8e+02 Score=30.78 Aligned_cols=44 Identities=18% Similarity=0.356 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 007324 493 MQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAE 536 (608)
Q Consensus 493 le~~reev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd~~ 536 (608)
++.+..+...+.+.....+....++.+++.+++.|.+.++++-.
T Consensus 52 l~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~ 95 (314)
T PF04111_consen 52 LEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEE 95 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555556666666666666666666666665544
No 184
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.56 E-value=4.4e+02 Score=30.20 Aligned_cols=111 Identities=23% Similarity=0.302 Sum_probs=65.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCc--hhHHHHHHH-HHHHHHHHHHHHhHHHHHHhHHHHHHHHHHH
Q 007324 448 AGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSP--EEANQAIQM-QAWQDEVERARQGQRDAENKLSSLEAEVQKM 524 (608)
Q Consensus 448 a~eLeqqv~~lea~~esl~QELqDyk~ka~Ril~gs~--e~Agqv~ql-e~~reev~~areq~~~~e~a~qe~~ae~q~~ 524 (608)
|.-|+|..-.+...|+.+..|+.+.+...+|++.--. ..+.-.++. +-+|+=+....-.|.++..++-..
T Consensus 102 ~~~leqertq~qq~~e~~erEv~~l~~llsr~~~~~~Lenem~ka~Ed~eKlrelv~pmekeI~elk~kl~~a------- 174 (542)
T KOG0993|consen 102 CQNLEQERTQLQQNEEKLEREVKALMELLSRGQYQLDLENEMDKAKEDEEKLRELVTPMEKEINELKKKLAKA------- 174 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhH-------
Confidence 3446666667778889999999999999999874322 222222222 345555555555565555555444
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHH
Q 007324 525 RVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKE 581 (608)
Q Consensus 525 e~El~~~Kqd~~~~Sr~s~~ELE~RlreLTE~LyqKQTqLEaLatEKaAl~fQLER~ 581 (608)
+.=+.-+....+||.- -||.+|++|- |+-.|.-.--|||.+
T Consensus 175 E~~i~El~k~~~h~a~--------slh~~t~lL~--------L~RD~s~~l~~leel 215 (542)
T KOG0993|consen 175 EQRIDELSKAKHHKAE--------SLHVFTDLLN--------LARDKSEQLRQLEEL 215 (542)
T ss_pred HHHHHHHHhhhcccch--------HHHHHHHHHH--------HhcCCchhhhHHHHh
Confidence 3323333344455522 5899999997 566665444455443
No 185
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=49.96 E-value=1.5e+02 Score=24.62 Aligned_cols=83 Identities=24% Similarity=0.367 Sum_probs=41.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHH
Q 007324 447 KAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRV 526 (608)
Q Consensus 447 ra~eLeqqv~~lea~~esl~QELqDyk~ka~Ril~gs~e~Agqv~qle~~reev~~areq~~~~e~a~qe~~ae~q~~e~ 526 (608)
....+.+++...+..+..|...+.+|.....-. . ....+.++..|+.-+..+...+..+...+..++.+++.++.
T Consensus 6 ~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~----~-~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~ 80 (123)
T PF02050_consen 6 ELAEAQQELQEAEEQLEQLQQERQEYQEQLSES----Q-QGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQARE 80 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT----------SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----c-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555666666663332222 2 12234455566666666666666666666666555555555
Q ss_pred HHHHHHHH
Q 007324 527 EMAAMKRD 534 (608)
Q Consensus 527 El~~~Kqd 534 (608)
.+-...++
T Consensus 81 ~l~~a~~~ 88 (123)
T PF02050_consen 81 ELQEARRE 88 (123)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444333
No 186
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=49.85 E-value=1.9e+02 Score=25.81 Aligned_cols=48 Identities=21% Similarity=0.290 Sum_probs=39.5
Q ss_pred hhhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHhhhhhhhhh
Q 007324 331 ESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMR 378 (608)
Q Consensus 331 EsdlteALAAKdSqLavL~vrldeadq~l~~~e~~La~LQ~e~~RImq 378 (608)
+-+..+|+..=+..++.+..++..........+..+..+|..+..++.
T Consensus 62 ~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~~~ 109 (110)
T TIGR02338 62 KTDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEALA 109 (110)
T ss_pred eecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 577888888888888888888888888888888888888888777653
No 187
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=49.71 E-value=4.5e+02 Score=30.07 Aligned_cols=41 Identities=12% Similarity=0.302 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 007324 496 WQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAE 536 (608)
Q Consensus 496 ~reev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd~~ 536 (608)
+++.+..+...+...+..+.....++..++.++..++.++.
T Consensus 426 l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 466 (650)
T TIGR03185 426 LLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLD 466 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444445444444444
No 188
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=49.69 E-value=6.3e+02 Score=31.79 Aligned_cols=201 Identities=18% Similarity=0.244 Sum_probs=108.0
Q ss_pred HHHHHhhhhhhhhhhhhhhhHhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhh---hhHHHHHhcccchhHHHH
Q 007324 273 RLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVE---SNLAEALAAKNSEIETLV 349 (608)
Q Consensus 273 rL~rvc~~ls~rL~~lr~EN~QLEeLLr~E~~~~~S~~~r~k~lQ~ELs~ar~~v~k~E---sdlteALAAKdSqLavL~ 349 (608)
+|-+-.--|.+.|..|+.|-+|+..-=..=..+...|.=.+++||+++...+-...... ..+-+-+--+.-+|...+
T Consensus 269 ~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~ 348 (1200)
T KOG0964|consen 269 DLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIE 348 (1200)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444455667788888888877765555556677778888999988866544433321 112222233444555555
Q ss_pred HHHHHHHHHHHhhHhHHHHHhhhhhhhhhhhhhh--------------------------hhHHHHHHHHHHHHHHHHHH
Q 007324 350 SSIDALKKQAALSEGNLASLQMNMESIMRNRELT--------------------------ETRMIQALREELASVERRAE 403 (608)
Q Consensus 350 vrldeadq~l~~~e~~La~LQ~e~~RImqdh~~~--------------------------e~q~lqaLREeLa~AE~rL~ 403 (608)
-+|....-.-.-....|+.|+.....|+.-+..+ -..--++|+-++.++++-++
T Consensus 349 Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~ 428 (1200)
T KOG0964|consen 349 PKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESELK 428 (1200)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 5555554444444455555554333333222211 02233566777777777664
Q ss_pred HHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007324 404 EERAAHNATKMAAMEREV-ELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKR 478 (608)
Q Consensus 404 ~Eq~ah~Atr~aamERE~-elE~qlAeastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka~R 478 (608)
+--+- ..+.++.- +...++.+.-+-.+...|.+++...+-..|=-+=+.+...++++.+.|.-.+....+
T Consensus 429 ~~~e~-----i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~ 499 (1200)
T KOG0964|consen 429 EKLEE-----IKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNLRA 499 (1200)
T ss_pred HHHHH-----HHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32222 11111110 234445555555666777777776666665555555666666666666655444433
No 189
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=49.65 E-value=2.5e+02 Score=27.10 Aligned_cols=52 Identities=25% Similarity=0.333 Sum_probs=28.4
Q ss_pred HHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q 007324 499 EVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELT 554 (608)
Q Consensus 499 ev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd~~~~Sr~s~~ELE~RlreLT 554 (608)
+++..++.+.+++....+....++..+.+...|++++. ..-..|.+.+.+|.
T Consensus 88 ~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~~e~~~----~~ve~L~~ql~~L~ 139 (140)
T PF10473_consen 88 ELQKKQEKVSELESLNSSLENLLQEKEQEKVQLKEESK----SAVEMLQKQLKELN 139 (140)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhc
Confidence 34444444445555555555555555766555555544 34456666666664
No 190
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=49.43 E-value=3.7e+02 Score=29.08 Aligned_cols=78 Identities=21% Similarity=0.185 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHH
Q 007324 423 LEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVER 502 (608)
Q Consensus 423 lE~qlAeastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka~Ril~gs~e~Agqv~qle~~reev~~ 502 (608)
|-..|+.=..-..+.|+-+.-=-.++.+|+++++.+-++-+-|.|-|..+|.-= ..++.++..
T Consensus 218 LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q-----------------~~L~aEL~e 280 (306)
T PF04849_consen 218 LSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQ-----------------RQLQAELQE 280 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-----------------HHHHHHHHH
Confidence 334455555555556666666666777777777777777777777776664321 123445666
Q ss_pred HHHhHHHHHHhHHHH
Q 007324 503 ARQGQRDAENKLSSL 517 (608)
Q Consensus 503 areq~~~~e~a~qe~ 517 (608)
+++...+-..-+.+.
T Consensus 281 lqdkY~E~~~mL~Ea 295 (306)
T PF04849_consen 281 LQDKYAECMAMLHEA 295 (306)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666655555544444
No 191
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=49.39 E-value=2.3e+02 Score=26.65 Aligned_cols=70 Identities=26% Similarity=0.316 Sum_probs=40.7
Q ss_pred hhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 007324 332 SNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAH 409 (608)
Q Consensus 332 sdlteALAAKdSqLavL~vrldeadq~l~~~e~~La~LQ~e~~RImqdh~~~e~q~lqaLREeLa~AE~rL~~Eq~ah 409 (608)
..+..-|++=...|+..|.+.+++.++-...+..+..|+... .+-++-+.-|+.++.+|.+.++.|..++
T Consensus 12 ~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~--------~s~~qr~~eLqaki~ea~~~le~eK~ak 81 (107)
T PF09304_consen 12 NELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQN--------ASRNQRIAELQAKIDEARRNLEDEKQAK 81 (107)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566666666666666555555555555554332 3345566667777777777776665543
No 192
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=48.13 E-value=3.3e+02 Score=28.12 Aligned_cols=112 Identities=21% Similarity=0.327 Sum_probs=50.1
Q ss_pred hhHHHHHHHHHHHHHHHhhHhHHHHHhhhhhhhhhhhhhhhhHH------HHHHHHHHHHHHHHHHH--------HHHHh
Q 007324 344 EIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRM------IQALREELASVERRAEE--------ERAAH 409 (608)
Q Consensus 344 qLavL~vrldeadq~l~~~e~~La~LQ~e~~RImqdh~~~e~q~------lqaLREeLa~AE~rL~~--------Eq~ah 409 (608)
.++.|..|++.....+....+.|+.++.-..-.=+++...+.+| .+-+.++....|..|++ .+++.
T Consensus 5 ~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~e 84 (205)
T KOG1003|consen 5 DVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYE 84 (205)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555554444444444444444444444444444443222 23344444444444322 22333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 007324 410 NATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQ 467 (608)
Q Consensus 410 ~Atr~aamERE~elE~qlAeastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~Q 467 (608)
..+|-=.|. |++||+- ..++.-.-.+|.+|+.....+..++.++.+
T Consensus 85 EVarkL~ii-E~dLE~~-----------eeraE~~Es~~~eLeEe~~~~~~nlk~l~~ 130 (205)
T KOG1003|consen 85 EVARKLVII-EGELERA-----------EERAEAAESQSEELEEDLRILDSNLKSLSA 130 (205)
T ss_pred HHHHHHHHH-HhHHHHH-----------HHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Confidence 334433333 4555543 333444445666666666665555554443
No 193
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=47.97 E-value=3.5e+02 Score=28.29 Aligned_cols=24 Identities=4% Similarity=0.086 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 007324 386 RMIQALREELASVERRAEEERAAH 409 (608)
Q Consensus 386 q~lqaLREeLa~AE~rL~~Eq~ah 409 (608)
.-+..++.+|..||.+|..=|..|
T Consensus 177 ~ql~~~~~~l~~ae~~l~~fr~~~ 200 (362)
T TIGR01010 177 NEVKEAEQRLNATKAELLKYQIKN 200 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 334555555666666665544444
No 194
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=47.79 E-value=3.9e+02 Score=28.87 Aligned_cols=29 Identities=21% Similarity=0.484 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhHH
Q 007324 307 RSYEARIKQLEQELSVYKSEVTKVESNLA 335 (608)
Q Consensus 307 ~S~~~r~k~lQ~ELs~ar~~v~k~Esdlt 335 (608)
-.|.++..++++||+.-+..-...|..|-
T Consensus 23 ~~ykq~f~~~reEl~EFQegSrE~Eaele 51 (333)
T KOG1853|consen 23 HEYKQHFLQMREELNEFQEGSREIEAELE 51 (333)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 35788888899998877655555555443
No 195
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=47.38 E-value=1.1e+02 Score=35.10 Aligned_cols=82 Identities=27% Similarity=0.369 Sum_probs=61.6
Q ss_pred hhhHHHHHHHhhhhhhhhhhhhhhhHhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHH
Q 007324 268 QSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIET 347 (608)
Q Consensus 268 ~ske~rL~rvc~~ls~rL~~lr~EN~QLEeLLr~E~~~~~S~~~r~k~lQ~ELs~ar~~v~k~EsdlteALAAKdSqLav 347 (608)
.||=.++..-|.-|.+||.....+.+.+++- +.+..+++..||+||.--|..-+.==+.|+|-|+.-|-+|+.
T Consensus 433 dSKa~~f~~Ec~aL~~rL~~aE~ek~~l~ee-------L~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmNeqL~~ 505 (518)
T PF10212_consen 433 DSKAVHFYAECRALQKRLESAEKEKESLEEE-------LKEANQNISRLQDELETTRRNYEEQLSMMSEHLASMNEQLAK 505 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888899999999999988888755444 345567899999999554443333338888888888888888
Q ss_pred HHHHHHHHH
Q 007324 348 LVSSIDALK 356 (608)
Q Consensus 348 L~vrldead 356 (608)
-...++..+
T Consensus 506 Q~eeI~~LK 514 (518)
T PF10212_consen 506 QREEIQTLK 514 (518)
T ss_pred HHHHHHHHh
Confidence 777777665
No 196
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=47.14 E-value=3.8e+02 Score=28.46 Aligned_cols=83 Identities=28% Similarity=0.332 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-------HHHHHHHH
Q 007324 389 QALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQ-------KVAMLEVE 461 (608)
Q Consensus 389 qaLREeLa~AE~rL~~Eq~ah~Atr~aamERE~elE~qlAeastAL~~~QR~~~E~k~ra~eLeq-------qv~~lea~ 461 (608)
..|+++|-+--... +-|+-||..-+..++ ||.|++++= |..+...+..+..++..+.. +|..+...
T Consensus 138 ~~L~eKlK~l~eQy-e~rE~~~~~~~k~ke----LE~Ql~~AK--l~q~~~~~~~e~~k~~~~~~~~l~~~~~~~~~~~~ 210 (309)
T PF09728_consen 138 EELREKLKSLIEQY-ELREEHFEKLLKQKE----LEVQLAEAK--LEQQQEEAEQEKEKAKQEKEILLEEAAQVQTLKET 210 (309)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHhhHHH----HHHHHHHHH--HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667766554444 345667776665555 999987753 44567777788888888888 88888888
Q ss_pred HHHHHHHHHHHHHHHhh
Q 007324 462 CATLQQELQDMEARLKR 478 (608)
Q Consensus 462 ~esl~QELqDyk~ka~R 478 (608)
-..|+..|.-|..|-.-
T Consensus 211 E~~Lr~QL~~Y~~Kf~e 227 (309)
T PF09728_consen 211 EKELREQLNLYSEKFEE 227 (309)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888888876554
No 197
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=46.80 E-value=1.3e+02 Score=24.80 Aligned_cols=60 Identities=13% Similarity=0.291 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007324 413 KMAAMEREVELEHRAAEASMALARIQRIADERTAK-AGELEQKVAMLEVECATLQQELQDMEAR 475 (608)
Q Consensus 413 r~aamERE~elE~qlAeastAL~~~QR~~~E~k~r-a~eLeqqv~~lea~~esl~QELqDyk~k 475 (608)
+++.+.++-+-|..+-+.+.. |-+.|.-.++. ..+++.++..+...++.|+.+|.+|...
T Consensus 2 ~i~~L~~~i~~E~ki~~Gae~---m~~~~~t~~~~~~~~~~~~l~~s~~kI~~L~~~L~~l~~~ 62 (70)
T PF02185_consen 2 RIEELQKKIDKELKIKEGAEN---MLQAYSTDKKKVLSEAESQLRESNQKIELLREQLEKLQQR 62 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHCCHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666677778887777777 44444222333 6788888888888888888888887654
No 198
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=46.37 E-value=3.1e+02 Score=29.49 Aligned_cols=50 Identities=22% Similarity=0.397 Sum_probs=28.5
Q ss_pred HHHHhhhhhhhhhh-----hhhhhHhHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 007324 274 LARVCAGLSSRLQE-----YKSENAQLEELLVAERELSRSYEARIKQLEQELSVY 323 (608)
Q Consensus 274 L~rvc~~ls~rL~~-----lr~EN~QLEeLLr~E~~~~~S~~~r~k~lQ~ELs~a 323 (608)
++...+.+...|.. |+....++++=|.+=-..+..+..+++.|+..+...
T Consensus 53 fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y 107 (301)
T PF06120_consen 53 FADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNY 107 (301)
T ss_pred HHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555543 455556555555554455666666666666666443
No 199
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=45.76 E-value=2.4e+02 Score=25.78 Aligned_cols=98 Identities=11% Similarity=0.147 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 007324 433 ALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAEN 512 (608)
Q Consensus 433 AL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka~Ril~gs~e~Agqv~qle~~reev~~areq~~~~e~ 512 (608)
.|.-.++.-+..+.......+++...+..++.|.+...+|......... .|-++. +|..++.=+..+...|..+..
T Consensus 10 vl~l~~~~ee~a~~~la~a~~~~~~~~~~L~~L~~y~~~y~~~~~~~~~-~g~~~~---~l~~~~~fi~~L~~~I~~q~~ 85 (147)
T PRK05689 10 LLDLAEKAEEQAALQLGQARQELQQAEQQLKMLEDYRLEYRQQLNDRGS-AGMTSS---WWINYQQFLQQLEKAITQQRQ 85 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcCHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666666677777777777777777777775544321 222222 334455556666667777777
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 007324 513 KLSSLEAEVQKMRVEMAAMKRD 534 (608)
Q Consensus 513 a~qe~~ae~q~~e~El~~~Kqd 534 (608)
.+..++.+++.++..+-...++
T Consensus 86 ~v~~~~~~ve~~r~~~~~a~~~ 107 (147)
T PRK05689 86 QLTQWTQKVDNARKYWQEKKQR 107 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777766666666554444433
No 200
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=45.74 E-value=40 Score=28.17 Aligned_cols=29 Identities=38% Similarity=0.448 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007324 450 ELEQKVAMLEVECATLQQELQDMEARLKR 478 (608)
Q Consensus 450 eLeqqv~~lea~~esl~QELqDyk~ka~R 478 (608)
-+||+++.||..+..+.|++++++.+++.
T Consensus 29 tiEqRLa~LE~rL~~ae~ra~~ae~~~~~ 57 (60)
T PF11471_consen 29 TIEQRLAALEQRLQAAEQRAQAAEARAKQ 57 (60)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38889999999999999999998887753
No 201
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=45.64 E-value=5.1e+02 Score=29.58 Aligned_cols=85 Identities=20% Similarity=0.268 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 007324 388 IQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQ 467 (608)
Q Consensus 388 lqaLREeLa~AE~rL~~Eq~ah~Atr~aamERE~elE~qlAeastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~Q 467 (608)
+..++.+++..+.+++.++.++.. +++.++ +.+.++..--..| +.+++++.+++..+.- -..+..-+.=++.
T Consensus 76 ~~~~~~~~~~l~~~le~~~~~~~e-k~~~l~---~~~~~L~~~F~~L--A~~ile~k~~~f~~~~--~~~l~~ll~Pl~e 147 (475)
T PRK10361 76 NTSLEADLREVTTRMEAAQQHADD-KIRQMI---NSEQRLSEQFENL--ANRIFEHSNRRVDEQN--RQSLNSLLSPLRE 147 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH---HHHHHHHHHHHHH--HHHHHHHHHHHHHHHH--HHHHHHHHhhHHH
Confidence 345566666666677666665422 222222 1223333333332 4566666666665322 2334455555666
Q ss_pred HHHHHHHHHhhcc
Q 007324 468 ELQDMEARLKRGQ 480 (608)
Q Consensus 468 ELqDyk~ka~Ril 480 (608)
.|.+++.++..+-
T Consensus 148 ~l~~f~~~v~~~~ 160 (475)
T PRK10361 148 QLDGFRRQVQDSF 160 (475)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666555443
No 202
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=45.38 E-value=3.3e+02 Score=27.32 Aligned_cols=69 Identities=20% Similarity=0.346 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007324 496 WQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLE 565 (608)
Q Consensus 496 ~reev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd~~~~Sr~s~~ELE~RlreLTE~LyqKQTqLE 565 (608)
|.++-+.+...++.....+..++.....++.-+..+++++..... ...++++-.++|+-+|+.=-..|+
T Consensus 47 ~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~-qi~~~~~~~~~l~p~m~~m~~~L~ 115 (251)
T PF11932_consen 47 WDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQ-QIEQIEETRQELVPLMEQMIDELE 115 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444333333333333333333333333332111 123444555555555554333333
No 203
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=45.27 E-value=2.5e+02 Score=26.19 Aligned_cols=73 Identities=21% Similarity=0.211 Sum_probs=42.5
Q ss_pred hhhhhhhhhhhhhHhHHHHHHHHHHH----hHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHH
Q 007324 280 GLSSRLQEYKSENAQLEELLVAEREL----SRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDAL 355 (608)
Q Consensus 280 ~ls~rL~~lr~EN~QLEeLLr~E~~~----~~S~~~r~k~lQ~ELs~ar~~v~k~EsdlteALAAKdSqLavL~vrldea 355 (608)
|+.+++.+++-.-.+++..|..-|.. ..+-++.--.+..-++ .-...+..|+.+|.++
T Consensus 37 g~~~~~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~------------------~sq~~i~~lK~~L~~a 98 (142)
T PF04048_consen 37 GRAHRYQEFEELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSSIS------------------ESQERIRELKESLQEA 98 (142)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHH
Confidence 45556666665555555555544433 3333333333333333 3344556678888888
Q ss_pred HHHHHhhHhHHHHHh
Q 007324 356 KKQAALSEGNLASLQ 370 (608)
Q Consensus 356 dq~l~~~e~~La~LQ 370 (608)
+..+..+.+.|..|-
T Consensus 99 k~~L~~~~~eL~~L~ 113 (142)
T PF04048_consen 99 KSLLGCRREELKELW 113 (142)
T ss_pred HHHHhcCCHHHHHHH
Confidence 888888888777773
No 204
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=44.72 E-value=7.3e+02 Score=31.11 Aligned_cols=136 Identities=17% Similarity=0.239 Sum_probs=88.9
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhh--hhhHHHH---HhcccchhHHHHHHHHHHHHHHHhhHhHHH-------HHhhhh
Q 007324 306 SRSYEARIKQLEQELSVYKSEVTKV--ESNLAEA---LAAKNSEIETLVSSIDALKKQAALSEGNLA-------SLQMNM 373 (608)
Q Consensus 306 ~~S~~~r~k~lQ~ELs~ar~~v~k~--EsdlteA---LAAKdSqLavL~vrldeadq~l~~~e~~La-------~LQ~e~ 373 (608)
+..|...|..|..+|..||-.--.. ++..+.- .-++..+|..|...++..+.++..+++.+- .|..++
T Consensus 406 lKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~ 485 (1041)
T KOG0243|consen 406 LKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEK 485 (1041)
T ss_pred HHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 6777888888888887776433222 4555322 446677889999999999999888888876 444444
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007324 374 ESIMRNRELTETRMIQALREELASVERRAEEERAA---HNATKMAAMEREVELEHRAAEASMALARIQRIAD 442 (608)
Q Consensus 374 ~RImqdh~~~e~q~lqaLREeLa~AE~rL~~Eq~a---h~Atr~aamERE~elE~qlAeastAL~~~QR~~~ 442 (608)
..+-.+-. -.+.-|..+.+++..+.++|+++-.- ...+=+....|...|-+.+.++...+..+=++++
T Consensus 486 ~~~k~~L~-~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~l~~kld 556 (1041)
T KOG0243|consen 486 EKLKSKLQ-NKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLSSLFEKLD 556 (1041)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 43332222 13677889999999999998776555 2333344445555566667777776654444443
No 205
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=44.24 E-value=1.7e+02 Score=32.38 Aligned_cols=46 Identities=22% Similarity=0.300 Sum_probs=29.3
Q ss_pred hHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHhhhhhhhhh
Q 007324 333 NLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMR 378 (608)
Q Consensus 333 dlteALAAKdSqLavL~vrldeadq~l~~~e~~La~LQ~e~~RImq 378 (608)
++.+.+..-..+++.|..++.++.+.+...+..|+.|+.++..+..
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 128 EWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3445555555666666666667777776677777777666665554
No 206
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=43.92 E-value=4.1e+02 Score=27.95 Aligned_cols=73 Identities=22% Similarity=0.310 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh---hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007324 493 MQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAE---HYSREEHMELEKRYRELTDLLYYKQTQLETMAS 569 (608)
Q Consensus 493 le~~reev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd~~---~~Sr~s~~ELE~RlreLTE~LyqKQTqLEaLat 569 (608)
++..+.++..++.+.......+.++.++.+.+..+++.+++..+ .|++.+-..|.++|+.| ++.|.+.=++.
T Consensus 225 i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~L-----e~~~gw~~~~~ 299 (325)
T PF08317_consen 225 IEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDAL-----EKLTGWKIVSI 299 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-----HHHHCcEEEEE
Confidence 34455555566666666666666666666666666666655444 55666667777777654 44555544444
Q ss_pred H
Q 007324 570 E 570 (608)
Q Consensus 570 E 570 (608)
+
T Consensus 300 ~ 300 (325)
T PF08317_consen 300 S 300 (325)
T ss_pred e
Confidence 4
No 207
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=43.37 E-value=2.8e+02 Score=30.79 Aligned_cols=75 Identities=21% Similarity=0.286 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH----HHHHHH
Q 007324 388 IQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAM----LEVECA 463 (608)
Q Consensus 388 lqaLREeLa~AE~rL~~Eq~ah~Atr~aamERE~elE~qlAeastAL~~~QR~~~E~k~ra~eLeqqv~~----lea~~e 463 (608)
++.|.++|.+. ++.-......+.++. ...-+-+.-+--.+.|++-|+.-||.+|-- .-.+..
T Consensus 214 l~~~~~el~ei-----k~~~~~L~~~~e~Lk---------~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~ 279 (395)
T PF10267_consen 214 LQKILEELREI-----KESQSRLEESIEKLK---------EQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIY 279 (395)
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHH
Q 007324 464 TLQQELQDMEARL 476 (608)
Q Consensus 464 sl~QELqDyk~ka 476 (608)
.|||+|.+|+.|.
T Consensus 280 ~LKqeLa~~EEK~ 292 (395)
T PF10267_consen 280 NLKQELASMEEKM 292 (395)
T ss_pred HHHHHHHhHHHHH
No 208
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=43.32 E-value=3.7e+02 Score=27.21 Aligned_cols=32 Identities=25% Similarity=0.378 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 007324 449 GELEQKVAMLEVECATLQQELQDMEARLKRGQ 480 (608)
Q Consensus 449 ~eLeqqv~~lea~~esl~QELqDyk~ka~Ril 480 (608)
..++.++..+++.++.++..|..++....|..
T Consensus 104 ~~~~~~i~~~~~~~~~a~~~l~~a~~~~~r~~ 135 (334)
T TIGR00998 104 QQLQAKVESLKIKLEQAREKLLQAELDLRRRV 135 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34566777788888888888887777777765
No 209
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=42.96 E-value=3.2e+02 Score=30.89 Aligned_cols=79 Identities=24% Similarity=0.302 Sum_probs=53.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH----HH
Q 007324 384 ETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAM----LE 459 (608)
Q Consensus 384 e~q~lqaLREeLa~AE~rL~~Eq~ah~Atr~aamERE~elE~qlAeastAL~~~QR~~~E~k~ra~eLeqqv~~----le 459 (608)
++.++++|-++|.+.-.....=.++ ++ .|+-++--- ++-+--.++|++-|+.-||.++-- .-
T Consensus 258 ~~~~l~aileeL~eIk~~q~~Lees--------ye---~Lke~~krd---y~fi~etLQEERyR~erLEEqLNdlteLqQ 323 (455)
T KOG3850|consen 258 QGAALDAILEELREIKETQALLEES--------YE---RLKEQIKRD---YKFIAETLQEERYRYERLEEQLNDLTELQQ 323 (455)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHH--------HH---HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4567999999998876554322222 22 233332211 222445678999999999999765 67
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007324 460 VECATLQQELQDMEARL 476 (608)
Q Consensus 460 a~~esl~QELqDyk~ka 476 (608)
.+...|+|||.-|+.|+
T Consensus 324 nEi~nLKqElasmeerv 340 (455)
T KOG3850|consen 324 NEIANLKQELASMEERV 340 (455)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88999999999999875
No 210
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=42.35 E-value=2.9e+02 Score=28.82 Aligned_cols=82 Identities=17% Similarity=0.221 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 007324 496 WQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAE 575 (608)
Q Consensus 496 ~reev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd~~~~Sr~s~~ELE~RlreLTE~LyqKQTqLEaLatEKaAl~ 575 (608)
++.++..++.++..++..+...+++++.++.++.|.+.=++. .--+..+|++ ..-.|...|.+++.+-+.-+.+.
T Consensus 97 ~~~~~~~~~a~l~~~~~~l~~a~~~l~~a~~~~~r~~~L~~~-g~is~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~ 171 (370)
T PRK11578 97 AENQIKEVEATLMELRAQRQQAEAELKLARVTLSRQQRLAKT-QAVSQQDLDT----AATELAVKQAQIGTIDAQIKRNQ 171 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555555554433321 0112333333 22233444555555444444444
Q ss_pred HHhHHHH
Q 007324 576 FQLEKEM 582 (608)
Q Consensus 576 fQLER~e 582 (608)
-+|+...
T Consensus 172 ~~l~~~~ 178 (370)
T PRK11578 172 ASLDTAK 178 (370)
T ss_pred HHHHHHH
Confidence 4444333
No 211
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=42.09 E-value=3.1e+02 Score=25.98 Aligned_cols=25 Identities=28% Similarity=0.508 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 007324 451 LEQKVAMLEVECATLQQELQDMEAR 475 (608)
Q Consensus 451 Leqqv~~lea~~esl~QELqDyk~k 475 (608)
++.++..+...+..+.+||.++..+
T Consensus 79 ~~~e~~~~~~~l~~l~~el~~l~~~ 103 (191)
T PF04156_consen 79 LQGELSELQQQLQQLQEELDQLQER 103 (191)
T ss_pred hhhhHHhHHHHHHHHHHHHHHHHHH
Confidence 3335555555555555565555444
No 212
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=41.14 E-value=2.4e+02 Score=27.16 Aligned_cols=84 Identities=23% Similarity=0.278 Sum_probs=55.2
Q ss_pred hhhHhHHHHHHHHHHH---------------hHHHHHHHHHHHHHHhhhhhhhhhh----hhhHHHHHhcccchhHHHHH
Q 007324 290 SENAQLEELLVAEREL---------------SRSYEARIKQLEQELSVYKSEVTKV----ESNLAEALAAKNSEIETLVS 350 (608)
Q Consensus 290 ~EN~QLEeLLr~E~~~---------------~~S~~~r~k~lQ~ELs~ar~~v~k~----EsdlteALAAKdSqLavL~v 350 (608)
.+.+.+-.+.|+++-. +.+++.++..+++.+..++.+.... +.-..+..+..+.+++.|+.
T Consensus 89 ~~~~~~~~~fraQRN~YIsGf~LfL~l~I~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~ 168 (192)
T PF05529_consen 89 TEDQVLAKKFRAQRNMYISGFALFLSLVIRRVHSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKK 168 (192)
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHH
Confidence 4566666677777643 4566666667777666655544333 12244566677788888888
Q ss_pred HHHHHHHHHHhhHhHHHHHhhhh
Q 007324 351 SIDALKKQAALSEGNLASLQMNM 373 (608)
Q Consensus 351 rldeadq~l~~~e~~La~LQ~e~ 373 (608)
.|..++..+.+...+.+.++.+.
T Consensus 169 el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 169 ELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 88888888877777777776653
No 213
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=40.97 E-value=2.9e+02 Score=25.29 Aligned_cols=42 Identities=19% Similarity=0.313 Sum_probs=20.2
Q ss_pred hHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHhhhhh
Q 007324 333 NLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNME 374 (608)
Q Consensus 333 dlteALAAKdSqLavL~vrldeadq~l~~~e~~La~LQ~e~~ 374 (608)
++.+|+.-=+..+..|...++.....+......++.++....
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~ 132 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQ 132 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666665544444444444444444444444444444443333
No 214
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=40.87 E-value=4.8e+02 Score=27.88 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=13.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 007324 447 KAGELEQKVAMLEVECATLQQELQ 470 (608)
Q Consensus 447 ra~eLeqqv~~lea~~esl~QELq 470 (608)
.+.+++.++..++++++.++..|.
T Consensus 228 ~~~~~~~~l~~~~~~l~~~~~~l~ 251 (421)
T TIGR03794 228 ELETVEARIKEARYEIEELENKLN 251 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555555553
No 215
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=40.86 E-value=5.6e+02 Score=29.26 Aligned_cols=63 Identities=19% Similarity=0.240 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHhhhhhhhhhhhhh
Q 007324 309 YEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL 382 (608)
Q Consensus 309 ~~~r~k~lQ~ELs~ar~~v~k~EsdlteALAAKdSqLavL~vrldeadq~l~~~e~~La~LQ~e~~RImqdh~~ 382 (608)
..+|..++..+|...-.+.+.| -+|+.+|....++....+..++-.|..||.|..-|..++--
T Consensus 11 ~dqr~~~~~~~laq~~k~~s~~-----------~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 11 NDQRLIDLNTELAQCEKAQSRL-----------SAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVR 73 (459)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666664442222222 35777888888888888999999999999998877766543
No 216
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=40.28 E-value=2.7e+02 Score=28.80 Aligned_cols=43 Identities=21% Similarity=0.405 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHH-Hhhh
Q 007324 496 WQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRD-AEHY 538 (608)
Q Consensus 496 ~reev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd-~~~~ 538 (608)
...|=+++|.-..++|..+.....++..++.|++.+|.| +.+|
T Consensus 84 VtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLY 127 (248)
T PF08172_consen 84 VTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLY 127 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445788999999999999999999999999999999999 4444
No 217
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=40.25 E-value=4e+02 Score=26.78 Aligned_cols=61 Identities=23% Similarity=0.289 Sum_probs=44.1
Q ss_pred HHHhcccchh-----HHHHHHHHHHHHHHHhhHhHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007324 336 EALAAKNSEI-----ETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAA 408 (608)
Q Consensus 336 eALAAKdSqL-----avL~vrldeadq~l~~~e~~La~LQ~e~~RImqdh~~~e~q~lqaLREeLa~AE~rL~~Eq~a 408 (608)
+|-+|.|.|. +...++.+=+++-+.+...+=+.| .|--++|+-|..++++|+..+.+|..+
T Consensus 24 ~Ak~A~daQ~~A~~~Aa~~vk~~lA~kA~qaA~aAeAaL------------~GKq~iveqLe~ev~EAe~vV~ee~~s 89 (188)
T PF05335_consen 24 EAKAANDAQAAAAEQAAQQVKNQLADKAAQAAKAAEAAL------------AGKQQIVEQLEQEVREAEAVVQEEKAS 89 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555554 445566666777666666665665 456788999999999999999999888
No 218
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=40.09 E-value=2.7e+02 Score=24.83 Aligned_cols=46 Identities=22% Similarity=0.328 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007324 489 QAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHY 538 (608)
Q Consensus 489 qv~qle~~reev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd~~~~ 538 (608)
.+.+++.+|.++..+..++...+..+.+. .....||..+.-|...|
T Consensus 8 ~~~~~q~~q~~~~~l~~q~~~le~~~~E~----~~v~~eL~~l~~d~~vy 53 (110)
T TIGR02338 8 QLAQLQQLQQQLQAVATQKQQVEAQLKEA----EKALEELERLPDDTPVY 53 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHcCCCcchhH
Confidence 33455666666666666655555544433 34456677777777766
No 219
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.56 E-value=6.6e+02 Score=29.08 Aligned_cols=130 Identities=19% Similarity=0.266 Sum_probs=74.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------cc---CCCchhHHHHHHHHHHHHHHHHHHHhHHHHH
Q 007324 442 DERTAKAGELEQKVAMLEVECATLQQELQDMEARLKR-------GQ---KKSPEEANQAIQMQAWQDEVERARQGQRDAE 511 (608)
Q Consensus 442 ~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka~R-------il---~gs~e~Agqv~qle~~reev~~areq~~~~e 511 (608)
++-.+-...|+.+++.+.++...|.|.-.||+.-.-- .+ +-.+...+. ++.+.+..++.-
T Consensus 289 ~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e~~e~~~----------IqeleqdL~a~~ 358 (521)
T KOG1937|consen 289 DDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKNLETEDEEIRR----------IQELEQDLEAVD 358 (521)
T ss_pred CChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchHHHHHH----------HHHHHHHHHHHH
Confidence 3445666777788888888888888887777543211 11 111111121 111111122221
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHhh
Q 007324 512 NKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQE 587 (608)
Q Consensus 512 ~a~qe~~ae~q~~e~El~~~Kqd~~~~Sr~s~~ELE~RlreLTE~LyqKQTqLEaLatEKaAl~fQLER~eqq~k~ 587 (608)
...+.-+....+++.|++++-.|+.. -.+..|.++++-+.----+-+=.+..|--.|+.|++++-.+++-
T Consensus 359 eei~~~eel~~~Lrsele~lp~dv~r------k~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~R 428 (521)
T KOG1937|consen 359 EEIESNEELAEKLRSELEKLPDDVQR------KVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEALNR 428 (521)
T ss_pred HHHHhhHHHHHHHHHHHhcCCchhHH------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 12222223344555666555555542 35788999999885444456778889999999999888877754
No 220
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=39.50 E-value=4.4e+02 Score=27.03 Aligned_cols=36 Identities=17% Similarity=0.194 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 007324 427 AAEASMALARIQRIADERTAKAGELEQKVAMLEVEC 462 (608)
Q Consensus 427 lAeastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~ 462 (608)
+....+.+..+.+.+..-..|+.++..+..++++..
T Consensus 108 ~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~ 143 (225)
T COG1842 108 LQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARK 143 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555566666555555555555555554443
No 221
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=39.47 E-value=59 Score=31.45 Aligned_cols=33 Identities=21% Similarity=0.504 Sum_probs=27.9
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007324 506 GQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHY 538 (608)
Q Consensus 506 q~~~~e~a~qe~~ae~q~~e~El~~~Kqd~~~~ 538 (608)
|..+++..+..+..++.+|..|..+|+++++.|
T Consensus 75 Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~ 107 (135)
T KOG4196|consen 75 QKHELEKEKAELQQQVEKLKEENSRLRRELDAY 107 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788889999999999999999999965
No 222
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=39.32 E-value=6.7e+02 Score=29.10 Aligned_cols=68 Identities=21% Similarity=0.347 Sum_probs=56.1
Q ss_pred ccchhHHHHHHHHHHHHHHHhhHhHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007324 341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAA 408 (608)
Q Consensus 341 KdSqLavL~vrldeadq~l~~~e~~La~LQ~e~~RImqdh~~~e~q~lqaLREeLa~AE~rL~~Eq~a 408 (608)
...|+..|...++.+...+..-+..|..|-.-..+=-.+|+..|+.|+...|.....--.+.+.||++
T Consensus 138 e~~q~~~LekAl~~~~~i~~~E~~~l~~L~~AL~kE~~~Rt~dE~~mv~~yr~ki~aL~~aIe~Er~~ 205 (508)
T PF00901_consen 138 EENQIEILEKALKSYGKIVKEENKQLDRLARALQKESRERTQDERKMVEEYRQKIDALKNAIEVEREG 205 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45688999999999999988888888887544444455677779999999999999988899999887
No 223
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=38.86 E-value=1.2e+02 Score=34.53 Aligned_cols=44 Identities=11% Similarity=0.188 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 007324 520 EVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQL 564 (608)
Q Consensus 520 e~q~~e~El~~~Kqd~~~~Sr~s~~ELE~RlreLTE~LyqKQTqL 564 (608)
....++..|+.+|++++..++. ..++|+++.+|-+.+-.-+.|+
T Consensus 77 kasELEKqLaaLrqElq~~saq-~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 77 TAAQMQKQYEEIRRELDVLNKQ-RGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHH
Confidence 3333455555555555543333 2355666554444444434444
No 224
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=38.52 E-value=5.5e+02 Score=27.92 Aligned_cols=85 Identities=22% Similarity=0.274 Sum_probs=61.5
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHH
Q 007324 506 GQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRL 585 (608)
Q Consensus 506 q~~~~e~a~qe~~ae~q~~e~El~~~Kqd~~~~Sr~s~~ELE~RlreLTE~LyqKQTqLEaLatEKaAl~fQLER~eqq~ 585 (608)
++...+++++--+.-...-..|...+|++...+. .+-..||+.-.-|+--|..|-.|+--|-.-=++.-.|+|++++.+
T Consensus 40 QleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~-e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqel 118 (307)
T PF10481_consen 40 QLESLEAALQKQKQKVEEEKNEYSALKRENQSLM-ESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQEL 118 (307)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHH-HHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555677888888887432 235678888888999999999998888888888888888888877
Q ss_pred hhhhhh
Q 007324 586 QEVQVC 591 (608)
Q Consensus 586 k~~q~~ 591 (608)
+--.-|
T Consensus 119 kr~KsE 124 (307)
T PF10481_consen 119 KRCKSE 124 (307)
T ss_pred HHHHHH
Confidence 654443
No 225
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.51 E-value=4.5e+02 Score=27.82 Aligned_cols=52 Identities=25% Similarity=0.271 Sum_probs=42.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHhhhhhhhhhh
Q 007324 540 REEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQVCQRVL 595 (608)
Q Consensus 540 r~s~~ELE~RlreLTE~LyqKQTqLEaLatEKaAl~fQLER~eqq~k~~q~~~~~~ 595 (608)
++++.|+|+=+.-|++++-.++-+.| |-+||++.+.-+|-+.+-+++ |-+|+
T Consensus 54 S~~~~e~e~l~~~l~etene~~~~ne-L~~ek~~~q~~ieqeik~~q~---elEvl 105 (246)
T KOG4657|consen 54 SQSQVELENLKADLRETENELVKVNE-LKTEKEARQMGIEQEIKATQS---ELEVL 105 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 44688999999999999999999999 999999999988766655544 55554
No 226
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=38.43 E-value=6.8e+02 Score=28.95 Aligned_cols=142 Identities=14% Similarity=0.230 Sum_probs=69.1
Q ss_pred hhhhhhhhhhh--hhHHHHHHHHHHHHHHHH--------HHHHHHHhHHHHHHHHHH--HHHHHHH-HHHHHHHHHHHHH
Q 007324 373 MESIMRNRELT--ETRMIQALREELASVERR--------AEEERAAHNATKMAAMER--EVELEHR-AAEASMALARIQR 439 (608)
Q Consensus 373 ~~RImqdh~~~--e~q~lqaLREeLa~AE~r--------L~~Eq~ah~Atr~aamER--E~elE~q-lAeastAL~~~QR 439 (608)
+.++|+|-+.- -.+-++-||++|+.|... +--|+...-|.|+...-- |++.+++ |---=.+|..+++
T Consensus 244 v~km~kdle~Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~rkelE~lR~~L~kAEk 323 (575)
T KOG4403|consen 244 VNKMMKDLEGLQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSRKELEQLRVALEKAEK 323 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 33444444433 256677777777766432 111334445555554321 1222232 3334456777777
Q ss_pred HHHHHh--------hhhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHH-HHHHHHHHHHHHhHH
Q 007324 440 IADERT--------AKAGELEQKVAM--LEVECATLQQELQDMEARLKRGQKKSPEEANQAIQM-QAWQDEVERARQGQR 508 (608)
Q Consensus 440 ~~~E~k--------~ra~eLeqqv~~--lea~~esl~QELqDyk~ka~Ril~gs~e~Agqv~ql-e~~reev~~areq~~ 508 (608)
.+...+ .+--.+...+.+ +.-.-..+--+|+.++.-|.++.++-+.-.|..+-- -+ -+++.-..|=
T Consensus 324 ele~nS~wsaP~aLQ~wLq~T~E~E~q~~~kkrqnaekql~~Ake~~eklkKKrssv~gtl~vahgs---slDdVD~kIl 400 (575)
T KOG4403|consen 324 ELEANSSWSAPLALQKWLQLTHEVEVQYYNKKRQNAEKQLKEAKEMAEKLKKKRSSVFGTLHVAHGS---SLDDVDHKIL 400 (575)
T ss_pred HHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcchheeeeecccc---chhhHHHHHH
Confidence 777663 233333333333 222233344566667777777776644222211100 00 0444444677
Q ss_pred HHHHhHHHH
Q 007324 509 DAENKLSSL 517 (608)
Q Consensus 509 ~~e~a~qe~ 517 (608)
+++.++.++
T Consensus 401 eak~al~ev 409 (575)
T KOG4403|consen 401 EAKSALSEV 409 (575)
T ss_pred HHHHHHHHH
Confidence 777777766
No 227
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=37.56 E-value=9.6e+02 Score=30.40 Aligned_cols=179 Identities=18% Similarity=0.275 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhHhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHHHHHHH
Q 007324 281 LSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAA 360 (608)
Q Consensus 281 ls~rL~~lr~EN~QLEeLLr~E~~~~~S~~~r~k~lQ~ELs~ar~~v~k~EsdlteALAAKdSqLavL~vrldeadq~l~ 360 (608)
.+..|...-..+...|++|.. +..+=.+.......-..|...+-.+..++.+... ++.-++....++.
T Consensus 267 i~re~~~~Dk~i~~ke~~l~e-rp~li~~ke~~~~~k~rl~~~~k~i~~~kk~~~~-----------~~~~ie~~ek~l~ 334 (1141)
T KOG0018|consen 267 IRRELQKVDKKISEKEEKLAE-RPELIKVKENASHLKKRLEEIEKDIETAKKDYRA-----------LKETIERLEKELK 334 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-hhHHhhcchhhccchhHHHHhhhhHHHHHHHHHh-----------hHHHHHHHHHHHH
Q ss_pred hhHhHHHHHhhhhhhhhh----hhhhhhhHH-----------------HHHHHHHHHHHHHHHHHHHHH--hHHHHHHHH
Q 007324 361 LSEGNLASLQMNMESIMR----NRELTETRM-----------------IQALREELASVERRAEEERAA--HNATKMAAM 417 (608)
Q Consensus 361 ~~e~~La~LQ~e~~RImq----dh~~~e~q~-----------------lqaLREeLa~AE~rL~~Eq~a--h~Atr~aam 417 (608)
+.+++-++...++...+| .-+.-.++. ++.|--.-..-..+|..+..- ..-+|....
T Consensus 335 av~~~~~~fekei~~~~q~rg~~lnl~d~~~~ey~rlk~ea~~~~~~el~~ln~~~r~~~~~ld~~~~~~~elE~r~k~l 414 (1141)
T KOG0018|consen 335 AVEGAKEEFEKEIEERSQERGSELNLKDDQVEEYERLKEEACKEALEELEVLNRNMRSDQDTLDHELERRAELEARIKQL 414 (1141)
T ss_pred HHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 007324 418 EREV-ELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQD 471 (608)
Q Consensus 418 ERE~-elE~qlAeastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqD 471 (608)
...+ ++..++......++...|++.+.+...+.|+..+.+++..-.-++-||.+
T Consensus 415 ~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~ 469 (1141)
T KOG0018|consen 415 KESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEELVE 469 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHH
No 228
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=37.46 E-value=7.3e+02 Score=28.98 Aligned_cols=95 Identities=15% Similarity=0.256 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHhHH
Q 007324 429 EASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQR 508 (608)
Q Consensus 429 eastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka~Ril~gs~e~Agqv~qle~~reev~~areq~~ 508 (608)
++-..+..++..++....|..+|.++-..++.-+..--.+|. .+... .. .++ ..+-.++..+|+.+.
T Consensus 391 d~e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk---~~~~~---~~-~e~------~~~~~~ik~~r~~~k 457 (594)
T PF05667_consen 391 DAEENIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLK---EKASN---RE-SES------KQKLQEIKELREEIK 457 (594)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH---HHHhh---cc-hHH------HHHHHHHHHHHHHHH
Confidence 344555667777777888888888777776664443333332 22111 11 111 223346666666777
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 007324 509 DAENKLSSLEAEVQKMRVEMAAMKRDAE 536 (608)
Q Consensus 509 ~~e~a~qe~~ae~q~~e~El~~~Kqd~~ 536 (608)
+....++.-......+..|+++|-+++.
T Consensus 458 ~~~~e~~~Kee~~~qL~~e~e~~~k~~~ 485 (594)
T PF05667_consen 458 EIEEEIRQKEELYKQLVKELEKLPKDVN 485 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 7777777666777777888888888876
No 229
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=37.19 E-value=1.6e+02 Score=24.85 Aligned_cols=49 Identities=24% Similarity=0.352 Sum_probs=36.8
Q ss_pred hhhhhhhhhhhhhhhHhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhh
Q 007324 278 CAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSE 326 (608)
Q Consensus 278 c~~ls~rL~~lr~EN~QLEeLLr~E~~~~~S~~~r~k~lQ~ELs~ar~~ 326 (608)
--.++.+|...|..|..++.-|...-.....+.+.++.|..++..+|++
T Consensus 13 kQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~~ 61 (61)
T PF08826_consen 13 KQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRSR 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3456777888888888888888776666788888888888888777653
No 230
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=36.05 E-value=4.5e+02 Score=26.12 Aligned_cols=114 Identities=21% Similarity=0.273 Sum_probs=64.1
Q ss_pred hhhhhhhhhhHhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh---------hhhhhhhhHHHHHhcccchhHHHHHHHH
Q 007324 283 SRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKS---------EVTKVESNLAEALAAKNSEIETLVSSID 353 (608)
Q Consensus 283 ~rL~~lr~EN~QLEeLLr~E~~~~~S~~~r~k~lQ~ELs~ar~---------~v~k~EsdlteALAAKdSqLavL~vrld 353 (608)
++|++|.-+++-.-.|+..=-.++..|..+..+|..-|+..+. ....+..||-+ ...+|+
T Consensus 2 rrl~a~qe~Qq~qa~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~-----------~l~rLe 70 (182)
T PF15035_consen 2 RRLDAYQEEQQRQAQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEE-----------ALIRLE 70 (182)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHH-----------HHHHHH
Confidence 3555555555533333333333355566666666665532200 11111234444 556677
Q ss_pred HHHHHHHh-------hHhHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007324 354 ALKKQAAL-------SEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAA 408 (608)
Q Consensus 354 eadq~l~~-------~e~~La~LQ~e~~RImqdh~~~e~q~lqaLREeLa~AE~rL~~Eq~a 408 (608)
+-.+.... ..+.|+.....+..|..|-.-. +.=+..|+++|..-|.....|..+
T Consensus 71 EEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~kl-t~~~~~l~~eL~~ke~~~~~ee~~ 131 (182)
T PF15035_consen 71 EEQQRSEELAQVNALLREQLEQARKANEALQEDLQKL-TQDWERLRDELEQKEAEWREEEEN 131 (182)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76666555 6666666666666655443322 445677899999999999888776
No 231
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=36.04 E-value=6e+02 Score=27.60 Aligned_cols=161 Identities=15% Similarity=0.096 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHhhhhhhhhhhhhhhhhHHHH
Q 007324 310 EARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQ 389 (608)
Q Consensus 310 ~~r~k~lQ~ELs~ar~~v~k~EsdlteALAAKdSqLavL~vrldeadq~l~~~e~~La~LQ~e~~RImqdh~~~e~q~lq 389 (608)
.+....+...|..++.+....+..+.-+...+.........+.......+.....+...++.....+..+--..+.+ +.
T Consensus 238 ~~~~~~ln~ql~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~s~~i~~Lr~~~~~~~~~~~~l~~~~~~~~p~-~~ 316 (458)
T COG3206 238 EQQLSALNTQLQSARARLAQAEARLASLLQLLPLGREAAALREVLESPTIQDLRQQYAQVRQQIADLSTELGAKHPQ-LV 316 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHhccHHHHHHHHHHHHHHHHHHHHHHhhcccChH-HH
Confidence 34455556666666666666655555544444444422222222222222222233333322222233222222222 33
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 007324 390 ALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQEL 469 (608)
Q Consensus 390 aLREeLa~AE~rL~~Eq~ah~Atr~aamERE~elE~qlAeastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QEL 469 (608)
+++..+.+.+..+..|-.---++..+...+=.-.+..++.....+...-..+-..-.+..+|+.++...+.-.+++=+..
T Consensus 317 ~~~~q~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~~~~~~~~~~~~l~~L~Re~~~~r~~ye~lL~r~ 396 (458)
T COG3206 317 ALEAQLAELRQQIAAELRQILASLPNELALLEQQEAALEKELAQLKGRLSKLPKLQVQLRELEREAEAARSLYETLLQRY 396 (458)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHhhchHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555554443332222222211111111113333333333333444444555555555555555555444444
Q ss_pred HH
Q 007324 470 QD 471 (608)
Q Consensus 470 qD 471 (608)
++
T Consensus 397 qe 398 (458)
T COG3206 397 QE 398 (458)
T ss_pred HH
Confidence 33
No 232
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=35.97 E-value=2.8e+02 Score=24.89 Aligned_cols=60 Identities=15% Similarity=0.175 Sum_probs=39.9
Q ss_pred hHHHHHHHhhhhhhhhhhhhhhhHhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHH
Q 007324 270 KEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAE 336 (608)
Q Consensus 270 ke~rL~rvc~~ls~rL~~lr~EN~QLEeLLr~E~~~~~S~~~r~k~lQ~ELs~ar~~v~k~Esdlte 336 (608)
|+.--.-+..=|.-++.+||..|.+|.+-.-.-...-..|.+...+|++|. ..|.+.|..
T Consensus 12 KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~-------~~WqerLr~ 71 (79)
T PRK15422 12 KVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQ-------NGWQERLQA 71 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 455556677788889999999999555443333333555777777787777 556554443
No 233
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=35.79 E-value=3.8e+02 Score=29.65 Aligned_cols=14 Identities=21% Similarity=0.292 Sum_probs=7.2
Q ss_pred HHHHHHHHhhccCC
Q 007324 469 LQDMEARLKRGQKK 482 (608)
Q Consensus 469 LqDyk~ka~Ril~g 482 (608)
|.+++.++..|...
T Consensus 62 L~~Ak~ea~~Ii~~ 75 (445)
T PRK13428 62 VEDAKAEAARVVEE 75 (445)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555555543
No 234
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=35.79 E-value=2.4e+02 Score=25.72 Aligned_cols=21 Identities=33% Similarity=0.442 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 007324 452 EQKVAMLEVECATLQQELQDM 472 (608)
Q Consensus 452 eqqv~~lea~~esl~QELqDy 472 (608)
+.+.+.....+.+..++|+.+
T Consensus 42 ~~~~~~~~~~l~~~~~el~~~ 62 (158)
T PF03938_consen 42 QEKFKALQKELQAKQKELQKL 62 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444333
No 235
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=35.46 E-value=7.3e+02 Score=28.41 Aligned_cols=94 Identities=13% Similarity=0.230 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHH--HHhhhhhhhhhhhhhh
Q 007324 306 SRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLA--SLQMNMESIMRNRELT 383 (608)
Q Consensus 306 ~~S~~~r~k~lQ~ELs~ar~~v~k~EsdlteALAAKdSqLavL~vrldeadq~l~~~e~~La--~LQ~e~~RImqdh~~~ 383 (608)
+..+..++..++.+++..+.+...++..+.+.-.+...+++. |+.+.+++...=++|+ .|+....++...+..+
T Consensus 62 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~----l~~~~~~L~~~F~~LA~~ile~k~~~f~~~~~~~ 137 (475)
T PRK10361 62 CELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQ----MINSEQRLSEQFENLANRIFEHSNRRVDEQNRQS 137 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555554444443333333333332 3333333333333332 2444445555544444
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 007324 384 ETRMIQALREELASVERRAE 403 (608)
Q Consensus 384 e~q~lqaLREeLa~AE~rL~ 403 (608)
=..+|.=|++.|..-+.++.
T Consensus 138 l~~ll~Pl~e~l~~f~~~v~ 157 (475)
T PRK10361 138 LNSLLSPLREQLDGFRRQVQ 157 (475)
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 57788889999988888775
No 236
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=35.08 E-value=3.6e+02 Score=24.75 Aligned_cols=92 Identities=9% Similarity=0.089 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 007324 434 LARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENK 513 (608)
Q Consensus 434 L~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka~Ril~gs~e~Agqv~qle~~reev~~areq~~~~e~a 513 (608)
|.-.++.-+..+.....+.+.+...+..+..|.+...+|......... .|-++ .++..|+.=+..+.+.|..+...
T Consensus 11 L~l~~~~ee~a~~~L~~a~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~-~g~~~---~~l~~~~~fl~~L~~~i~~q~~~ 86 (146)
T PRK07720 11 LELKENEKEKALGEYEEAVSRFEQVAEKLYELLKQKEDLEQAKEEKLQ-SGLSI---QEIRHYQQFVTNLERTIDHYQLL 86 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555666666666666666777777777777888776654321 12222 23444555566666666666655
Q ss_pred HHHHHHHHHHHHHHHH
Q 007324 514 LSSLEAEVQKMRVEMA 529 (608)
Q Consensus 514 ~qe~~ae~q~~e~El~ 529 (608)
+..++.+++.++..+-
T Consensus 87 v~~~~~~ve~~r~~~~ 102 (146)
T PRK07720 87 VMQAREQMNRKQQDLT 102 (146)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555444444433
No 237
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=35.03 E-value=3.1e+02 Score=24.01 Aligned_cols=45 Identities=29% Similarity=0.401 Sum_probs=26.2
Q ss_pred hhhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHhhhhhh
Q 007324 331 ESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMES 375 (608)
Q Consensus 331 EsdlteALAAKdSqLavL~vrldeadq~l~~~e~~La~LQ~e~~R 375 (608)
|-++.+|..-=+..++.|..+++.....+......+..++..++.
T Consensus 82 e~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~ 126 (129)
T cd00890 82 EKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQ 126 (129)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777765555555555555555555555555555555554443
No 238
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=34.69 E-value=7.9e+02 Score=28.56 Aligned_cols=108 Identities=19% Similarity=0.288 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhccCCCchhHHHHHHHH----HHH
Q 007324 423 LEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQEL-QDMEARLKRGQKKSPEEANQAIQMQ----AWQ 497 (608)
Q Consensus 423 lE~qlAeastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QEL-qDyk~ka~Ril~gs~e~Agqv~qle----~~r 497 (608)
++.-+...-.+|+..|+-+.|...--.-|+-+++..+++--.|+-+- ..|.+|.. ...|-++|. .-.
T Consensus 388 ~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnk--------svsqclEmdk~LskKe 459 (527)
T PF15066_consen 388 IEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNK--------SVSQCLEMDKTLSKKE 459 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh--------HHHHHHHHHHHhhhhH
Confidence 33333334444555666666655555566666677776666665442 22444432 234444442 234
Q ss_pred HHHHHHHHhHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHhhh
Q 007324 498 DEVERARQGQRDAENKL----SSLEAEVQKMRVEMAAMKRDAEHY 538 (608)
Q Consensus 498 eev~~areq~~~~e~a~----qe~~ae~q~~e~El~~~Kqd~~~~ 538 (608)
++|+++++-.++++.+. .-+..|.+.-+.|+=.+..+|+.|
T Consensus 460 eeverLQ~lkgelEkat~SALdlLkrEKe~~EqefLslqeEfQk~ 504 (527)
T PF15066_consen 460 EEVERLQQLKGELEKATTSALDLLKREKETREQEFLSLQEEFQKH 504 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777776666666544 335555555566665666666543
No 239
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=34.60 E-value=3.9e+02 Score=25.06 Aligned_cols=114 Identities=11% Similarity=0.071 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHH----H--H
Q 007324 419 REVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQA----I--Q 492 (608)
Q Consensus 419 RE~elE~qlAeastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka~Ril~gs~e~Agqv----~--q 492 (608)
+..-||++++-....|..++.-+...-.-..--...+..++.+|..+..++.+..-++.-.+.....++... . -
T Consensus 28 ~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL~~~~~~~~~~~~~~~~~~ 107 (160)
T PF13094_consen 28 RKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPVLQLDDSGVLELPELPQKSL 107 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcccccccccccccccccc
Confidence 344578888888888887887777766666666777777888888888888887777655552221111000 0 0
Q ss_pred H--------HHH-HHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 007324 493 M--------QAW-QDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMK 532 (608)
Q Consensus 493 l--------e~~-reev~~areq~~~~e~a~qe~~ae~q~~e~El~~~K 532 (608)
+ ..+ .+++..+-.+++..-..++.-.+++..|...|++.+
T Consensus 108 ~~~~~~~~~~~l~d~el~~l~~ql~~hl~s~~~n~~~l~~~~~~ie~~~ 156 (160)
T PF13094_consen 108 LEASESRFAPTLCDEELLPLLKQLNKHLESMQNNLQQLKGLLEAIERSY 156 (160)
T ss_pred ccccccccCcccchHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 0 113 556666666666444444444444555555555443
No 240
>KOG3809 consensus Microtubule-binding protein MIP-T3 [Cytoskeleton]
Probab=34.26 E-value=6.8e+02 Score=28.99 Aligned_cols=54 Identities=20% Similarity=0.290 Sum_probs=44.4
Q ss_pred hhhhhhhhhhhhhhhHhHHHHHHHHHHH-----------hHHHHHHHHHHHHHHhhhhhhhhhhh
Q 007324 278 CAGLSSRLQEYKSENAQLEELLVAEREL-----------SRSYEARIKQLEQELSVYKSEVTKVE 331 (608)
Q Consensus 278 c~~ls~rL~~lr~EN~QLEeLLr~E~~~-----------~~S~~~r~k~lQ~ELs~ar~~v~k~E 331 (608)
++.+-.+|+-.|+||-|-++-|-+|... ++-|.+.|++.++++.++|+++-.-|
T Consensus 509 ~daMq~EL~mWrse~rq~~~elq~eq~~t~~a~epL~~~la~lq~~I~d~~e~i~~~r~~IL~Ne 573 (583)
T KOG3809|consen 509 IDAMQKELEMWRSEQRQNEQELQNEQAATFGASEPLYNILANLQKEINDTKEEISKARGRILNNE 573 (583)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 3457789999999999999999999876 66777888888899988888875543
No 241
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=33.98 E-value=7.7e+02 Score=28.22 Aligned_cols=43 Identities=19% Similarity=0.282 Sum_probs=23.6
Q ss_pred cchhHHHHHHHHHHHHHHHhhHhHHHHHhhhhhhhhhhhhhhh
Q 007324 342 NSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTE 384 (608)
Q Consensus 342 dSqLavL~vrldeadq~l~~~e~~La~LQ~e~~RImqdh~~~e 384 (608)
+++|....-.-+.+.+++.....++...|-+..|+-....+.+
T Consensus 108 ~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lq 150 (499)
T COG4372 108 RSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQ 150 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555666666666666655544443
No 242
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=33.88 E-value=3.9e+02 Score=25.65 Aligned_cols=76 Identities=21% Similarity=0.355 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhhccCCCc-hhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 007324 467 QELQDMEARLKRGQKKSP-EEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHME 545 (608)
Q Consensus 467 QELqDyk~ka~Ril~gs~-e~Agqv~qle~~reev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd~~~~Sr~s~~E 545 (608)
..|.++|..-.+-..+++ ..+. +-.+++..|.-++..+.....+++++.+=..|+.++|..++...+. -..
T Consensus 55 ~~Ls~LK~~y~~~~~~~~~~~~~-------l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~-n~~ 126 (131)
T PF04859_consen 55 RRLSELKRRYRKKQSDPSPQVAR-------LAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRA-NKS 126 (131)
T ss_pred HHHHHHHHHHHcCCCCCCccccc-------cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 467788887777664433 2221 1225666777788888888899999999999999999999964332 456
Q ss_pred HHHHH
Q 007324 546 LEKRY 550 (608)
Q Consensus 546 LE~Rl 550 (608)
||+||
T Consensus 127 Lekrl 131 (131)
T PF04859_consen 127 LEKRL 131 (131)
T ss_pred hhccC
Confidence 66664
No 243
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=33.40 E-value=4.8e+02 Score=30.03 Aligned_cols=26 Identities=8% Similarity=0.318 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhHHHH
Q 007324 492 QMQAWQDEVERARQGQRDAENKLSSL 517 (608)
Q Consensus 492 qle~~reev~~areq~~~~e~a~qe~ 517 (608)
.+.+|+..+....++..++..++++.
T Consensus 411 nq~vw~~kl~~~~e~~~~~~~s~d~~ 436 (493)
T KOG0804|consen 411 NQDVWRGKLKELEEREKEALGSKDEK 436 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778887777766666655544443
No 244
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.32 E-value=9.1e+02 Score=28.86 Aligned_cols=180 Identities=18% Similarity=0.190 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhhhhHhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhh-h--------------------hhHHH
Q 007324 278 CAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKV-E--------------------SNLAE 336 (608)
Q Consensus 278 c~~ls~rL~~lr~EN~QLEeLLr~E~~~~~S~~~r~k~lQ~ELs~ar~~v~k~-E--------------------sdlte 336 (608)
++-|.++|.+-..+..|--+.=-.=.+-...|.++..+|+-++..+|++.+.. | +.|-.
T Consensus 17 ierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLq 96 (772)
T KOG0999|consen 17 IERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQ 96 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHH
Q ss_pred HHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHhhhhhhhhhhhhhh--hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 007324 337 ALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELT--ETRMIQALREELASVERRAEEERAAHNATKM 414 (608)
Q Consensus 337 ALAAKdSqLavL~vrldeadq~l~~~e~~La~LQ~e~~RImqdh~~~--e~q~lqaLREeLa~AE~rL~~Eq~ah~Atr~ 414 (608)
--|||. +-+..++=+....|+-.+.-|+..|++++||.+-|++- .+.|+..=|-||.+-=.-. ..|+++--.-.
T Consensus 97 ESaakE---~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~-KfRE~RllseY 172 (772)
T KOG0999|consen 97 ESAAKE---EYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEY-KFREARLLSEY 172 (772)
T ss_pred HHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHH-HHHHHHHHHHH
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 007324 415 AAMEREVELEHR-AAEASMALARIQRIADERTAKAGELEQKVAMLEVECATL 465 (608)
Q Consensus 415 aamERE~elE~q-lAeastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl 465 (608)
+-+| =|-= +.-.+..|..-|=-|.--+--+.-|+..+..+...++-+
T Consensus 173 SELE----EENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee~ 220 (772)
T KOG0999|consen 173 SELE----EENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEA 220 (772)
T ss_pred HHHH----HhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
No 245
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=33.25 E-value=4.8e+02 Score=25.67 Aligned_cols=117 Identities=25% Similarity=0.281 Sum_probs=58.3
Q ss_pred HHHHHHhhhhhhhhhhhhhhhHhHHHHHH-------HHHHHhHHHHHHHHHHHH--------HHhhhhhhhhhhhhhHHH
Q 007324 272 ARLARVCAGLSSRLQEYKSENAQLEELLV-------AERELSRSYEARIKQLEQ--------ELSVYKSEVTKVESNLAE 336 (608)
Q Consensus 272 ~rL~rvc~~ls~rL~~lr~EN~QLEeLLr-------~E~~~~~S~~~r~k~lQ~--------ELs~ar~~v~k~Esdlte 336 (608)
.|..|-+..|..+|.++|-+.++++.-|. .+.+-+.++..+|+.+-. ++... .+|=+.+.+
T Consensus 11 ~rr~R~~~rL~~~L~~~r~al~~~~a~~~~~~a~v~~~~~~l~~~~~ri~~m~~gg~~f~i~~~~~~----~~~r~~l~~ 86 (158)
T PF09486_consen 11 QRRRRRERRLRARLAAQRRALAAAEAELAEQQAEVEAARQRLRAHDARIDAMMTGGAPFSIDEYLAL----RRYRDVLEE 86 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCccHHHHHHH----HHHHHHHHH
Confidence 56677788888888888887776554443 112223344444443322 11000 111244444
Q ss_pred HHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 007324 337 ALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERA 407 (608)
Q Consensus 337 ALAAKdSqLavL~vrldeadq~l~~~e~~La~LQ~e~~RImqdh~~~e~q~lqaLREeLa~AE~rL~~Eq~ 407 (608)
-+..--.+++.|...+++....+.....++.-+ ...++..++++....+.+++.++
T Consensus 87 ~~~~~e~~~a~l~~~l~~~~~~ia~~~raIarn---------------~a~id~~~er~~~l~r~~ea~~e 142 (158)
T PF09486_consen 87 RVRAAEAELAALRQALRAAEDEIAATRRAIARN---------------DARIDVCRERIDRLRRAAEAAAE 142 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------hhhHHHHHHHHHHHHHHHHHhHH
Confidence 444444444444444444444444443333333 34567777777766666655443
No 246
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=32.06 E-value=6.6e+02 Score=26.90 Aligned_cols=48 Identities=21% Similarity=0.273 Sum_probs=30.9
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhHhHHHHHH-----HHHHHhHHHHHHHHHHHHHHhh
Q 007324 271 EARLARVCAGLSSRLQEYKSENAQLEELLV-----AERELSRSYEARIKQLEQELSV 322 (608)
Q Consensus 271 e~rL~rvc~~ls~rL~~lr~EN~QLEeLLr-----~E~~~~~S~~~r~k~lQ~ELs~ 322 (608)
+.-|..-|+.+=+-+..+..+.. |.. .-.....=++-|+|.|+.|+++
T Consensus 18 ~~~l~~eCEe~wk~me~~q~kL~----l~~~e~l~~s~~ql~ll~~~~k~L~aE~~q 70 (268)
T PF11802_consen 18 KEELIKECEELWKDMEECQNKLS----LIGTETLTDSDAQLSLLMMRVKCLTAELEQ 70 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh----hcCCCCCCCcchhHHHHHHHHHHHHHHHHH
Confidence 34566788888888877766665 332 2222344677788888888843
No 247
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=31.93 E-value=5e+02 Score=28.27 Aligned_cols=53 Identities=21% Similarity=0.248 Sum_probs=44.6
Q ss_pred hhhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHhhhhhhhhhhhhhh
Q 007324 331 ESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELT 383 (608)
Q Consensus 331 EsdlteALAAKdSqLavL~vrldeadq~l~~~e~~La~LQ~e~~RImqdh~~~ 383 (608)
-.-|+-=|..|.+++..|...|..++.++...+..|--+.++++|-.+-...+
T Consensus 83 rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~ 135 (307)
T PF10481_consen 83 RQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSG 135 (307)
T ss_pred HHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 35667778899999999999999999999999999999988888876665543
No 248
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=31.76 E-value=3e+02 Score=22.80 Aligned_cols=62 Identities=16% Similarity=0.289 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007324 410 NATKMAAMEREVELEHRAAEASMALARIQRIADERTA--KAGELEQKVAMLEVECATLQQELQDMEA 474 (608)
Q Consensus 410 ~Atr~aamERE~elE~qlAeastAL~~~QR~~~E~k~--ra~eLeqqv~~lea~~esl~QELqDyk~ 474 (608)
-..|++...++-.-|.++.+.+.- |-+.|...+. -..+.+.+..-....++-|+.+|..|..
T Consensus 7 ~~~~l~~L~~~l~~E~~~r~Gaen---m~~~~~~~~~~~~~~~~~~~l~es~~ki~~Lr~~L~k~~~ 70 (72)
T cd00089 7 LQSRLERLEKELSIELKVKEGAEN---LLRLYSDEKKKKLLAEAEQMLRESKQKLELLKMQLEKLKQ 70 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456778888888888888887777 6666666554 3778889999999999999999999874
No 249
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=31.67 E-value=86 Score=29.91 Aligned_cols=32 Identities=34% Similarity=0.444 Sum_probs=24.6
Q ss_pred HHHHHhcccchhHHHHHHHHHHHHHHHhhHhH
Q 007324 334 LAEALAAKNSEIETLVSSIDALKKQAALSEGN 365 (608)
Q Consensus 334 lteALAAKdSqLavL~vrldeadq~l~~~e~~ 365 (608)
|-..+.+||++|..|+..|+++...-...+..
T Consensus 99 Le~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekr 130 (131)
T PF04859_consen 99 LEAELRAKDSEIDRLREKLDELNRANKSLEKR 130 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44556889999999999999988776555443
No 250
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=31.42 E-value=1.1e+03 Score=29.05 Aligned_cols=110 Identities=15% Similarity=0.164 Sum_probs=63.8
Q ss_pred hhHhHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHH--HHHHHHHHhHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 007324 361 LSEGNLASLQMNMESIMRNRELTETRMIQALREELASVER--RAEEERAAHNATKMAAMER----EVELEHRAAEASMAL 434 (608)
Q Consensus 361 ~~e~~La~LQ~e~~RImqdh~~~e~q~lqaLREeLa~AE~--rL~~Eq~ah~Atr~aamER----E~elE~qlAeastAL 434 (608)
-..+.+..|+++=+.|-+.. .-++-+|--||....++|- .-..|+...--.-...+.+ --++|+++.|++.-+
T Consensus 450 EkdE~I~~lm~EGEkLSK~q-l~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~ 528 (961)
T KOG4673|consen 450 EKDEIINQLMAEGEKLSKKQ-LAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKH 528 (961)
T ss_pred HHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 34444555555544443322 2346677888888888873 2223333321111111111 123677777777665
Q ss_pred HHHHHHHHHH----hhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 007324 435 ARIQRIADER----TAKAGELEQKVAMLEVECATLQQELQD 471 (608)
Q Consensus 435 ~~~QR~~~E~----k~ra~eLeqqv~~lea~~esl~QELqD 471 (608)
+.+-.+.++. ..++++||.+.....+..++++-.|+.
T Consensus 529 ~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk 569 (961)
T KOG4673|consen 529 QAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQK 569 (961)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 5554444444 367899999999999999999986653
No 251
>PRK10780 periplasmic chaperone; Provisional
Probab=31.41 E-value=4.6e+02 Score=24.86 Aligned_cols=53 Identities=13% Similarity=0.243 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHH
Q 007324 520 EVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYK-QTQLETMASEKA 572 (608)
Q Consensus 520 e~q~~e~El~~~Kqd~~~~Sr~s~~ELE~RlreLTE~LyqK-QTqLEaLatEKa 572 (608)
+++..+.|+....+++......-+.+|..|..+++.-++.| ++-++..|.+++
T Consensus 84 ~~~~~~~el~~~~~~~q~~~~~~qq~~~~~~~e~~~~i~~ki~~ai~~vak~~g 137 (165)
T PRK10780 84 DRTKLEKDVMAQRQTFSQKAQAFEQDRRRRSNEERNKILTRIQTAVKSVANKQG 137 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34455555655555555433334455666666665555544 334444444433
No 252
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=31.40 E-value=2.2e+02 Score=24.52 Aligned_cols=46 Identities=28% Similarity=0.259 Sum_probs=26.6
Q ss_pred hhhhhhhhhhhhhhhHhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhh
Q 007324 278 CAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKV 330 (608)
Q Consensus 278 c~~ls~rL~~lr~EN~QLEeLLr~E~~~~~S~~~r~k~lQ~ELs~ar~~v~k~ 330 (608)
+++|-.+.+.|+.||. +|+.+...+. ..-..|.+-...||.+|+..
T Consensus 9 le~Li~~~~~L~~EN~----~Lr~q~~~~~---~ER~~L~ekne~Ar~rvEam 54 (65)
T TIGR02449 9 VEHLLEYLERLKSENR----LLRAQEKTWR---EERAQLLEKNEQARQKVEAM 54 (65)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 3444445566778888 7776655433 33444555666666666543
No 253
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=31.39 E-value=5.2e+02 Score=25.46 Aligned_cols=33 Identities=30% Similarity=0.257 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007324 416 AMEREVELEHRAAEASMALARIQRIADERTAKA 448 (608)
Q Consensus 416 amERE~elE~qlAeastAL~~~QR~~~E~k~ra 448 (608)
+..+...|...+.+.-.+|..+...+++...++
T Consensus 13 r~R~~~rL~~~L~~~r~al~~~~a~~~~~~a~v 45 (158)
T PF09486_consen 13 RRRRERRLRARLAAQRRALAAAEAELAEQQAEV 45 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555554444333
No 254
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=30.78 E-value=8.3e+02 Score=27.63 Aligned_cols=81 Identities=14% Similarity=0.216 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----CCCchhHHHHHHHHHHHH
Q 007324 423 LEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQ----KKSPEEANQAIQMQAWQD 498 (608)
Q Consensus 423 lE~qlAeastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka~Ril----~gs~e~Agqv~qle~~re 498 (608)
.|.++..+-.+|...+-+ ..+-+-+.++...-.-+..|..+|.+.+..-.-.+ +.+|.-..--.++.+++.
T Consensus 254 Ae~rl~~Ar~aL~~fRn~-----~gvlDP~~~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~ 328 (434)
T PRK15178 254 AQENLGAARLELLKIQHI-----QKDIDPKETITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEK 328 (434)
T ss_pred HHHHHHHHHHHHHHHHHh-----CCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHH
Confidence 455566777776665532 22333333444433444444444444433332222 333333332224456666
Q ss_pred HHHHHHHhHH
Q 007324 499 EVERARQGQR 508 (608)
Q Consensus 499 ev~~areq~~ 508 (608)
++...+..+.
T Consensus 329 QIa~er~kl~ 338 (434)
T PRK15178 329 QIGEQRNRLS 338 (434)
T ss_pred HHHHHHHHhh
Confidence 6666665554
No 255
>TIGR03789 pdsO proteobacterial sortase system OmpA family protein. A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the OmpA protein family (pfam00691). Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein.
Probab=30.73 E-value=82 Score=32.45 Aligned_cols=44 Identities=25% Similarity=0.308 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhHHHHHHHhhhhhhhhhhccCCceeEeee
Q 007324 557 LYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQVCQRVLHSTPIEVVIYI 606 (608)
Q Consensus 557 LyqKQTqLEaLatEKaAl~fQLER~eqq~k~~q~~~~~~~~~~~~~~~~~ 606 (608)
|-+||+-|+.+..|.+.++-+|+++.++..-. ++++|+...||+
T Consensus 96 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~V~F 139 (239)
T TIGR03789 96 LTQKQQALEQLEAEYQQAQVHLETLQQDQQQL------LEELALGMNVQF 139 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hhcccCCcceee
Confidence 55788888888888888888888877654433 333666666654
No 256
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=30.71 E-value=6.1e+02 Score=26.04 Aligned_cols=43 Identities=16% Similarity=0.359 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHhhhh
Q 007324 543 HMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQ 589 (608)
Q Consensus 543 ~~ELE~RlreLTE~LyqKQTqLEaLatEKaAl~fQLER~eqq~k~~q 589 (608)
-..|.+++++...++-+| +++.+|++-..-.|..-...|+.+-
T Consensus 132 ~~~Lq~Ql~~~e~l~~~~----da~l~e~t~~i~eL~~~ieEy~~~t 174 (193)
T PF14662_consen 132 KATLQRQLCEFESLICQR----DAILSERTQQIEELKKTIEEYRSIT 174 (193)
T ss_pred hHHHHHHHHHHHHHHHHH----HHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 466777777777776655 5556666666555555555554443
No 257
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=30.67 E-value=8.4e+02 Score=29.10 Aligned_cols=93 Identities=18% Similarity=0.345 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH--HHHHHHHHHHHHHHHHHHhhhHH
Q 007324 494 QAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEK--RYRELTDLLYYKQTQLETMASEK 571 (608)
Q Consensus 494 e~~reev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd~~~~Sr~s~~ELE~--RlreLTE~LyqKQTqLEaLatEK 571 (608)
-+....+..+..++..++...++++.++..|+.|++.++..++.+.+.-+.++-. -++.+-. +=--|+.==.||
T Consensus 418 ~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~----~I~~L~~~L~e~ 493 (652)
T COG2433 418 TVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDR----RIERLEKELEEK 493 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH----HHHHHHHHHHHH
Confidence 3456677777777777777777777777777777777777766555543322211 1111111 112244444577
Q ss_pred HHHHHHhHHHHHHHhhhhh
Q 007324 572 AAAEFQLEKEMNRLQEVQV 590 (608)
Q Consensus 572 aAl~fQLER~eqq~k~~q~ 590 (608)
..-+-+|+|.+.+++..+.
T Consensus 494 ~~~ve~L~~~l~~l~k~~~ 512 (652)
T COG2433 494 KKRVEELERKLAELRKMRK 512 (652)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 7777788887777775544
No 258
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=30.60 E-value=5.3e+02 Score=25.34 Aligned_cols=46 Identities=17% Similarity=0.245 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHhhhh
Q 007324 544 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQ 589 (608)
Q Consensus 544 ~ELE~RlreLTE~LyqKQTqLEaLatEKaAl~fQLER~eqq~k~~q 589 (608)
-+||.||+.|-+++-.=...+=.++.=-+=|.-.|......+.+++
T Consensus 108 D~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~e~~~ 153 (159)
T PF05384_consen 108 DELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQIEDAQ 153 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5677777777666654444443333333333334444444444443
No 259
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=29.97 E-value=4.9e+02 Score=24.77 Aligned_cols=45 Identities=13% Similarity=0.057 Sum_probs=19.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhccC
Q 007324 437 IQRIADERTAKAGELEQKVAM----LEVECATLQQELQDMEARLKRGQK 481 (608)
Q Consensus 437 ~QR~~~E~k~ra~eLeqqv~~----lea~~esl~QELqDyk~ka~Ril~ 481 (608)
+.+.+++|+.++..--..+.. +....+..++.|.+.+..+..|..
T Consensus 43 i~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~ii~ 91 (175)
T PRK14472 43 ILSALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEADKIIR 91 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555444333322222 222333344445555555555443
No 260
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=29.79 E-value=6.2e+02 Score=29.22 Aligned_cols=35 Identities=23% Similarity=0.303 Sum_probs=21.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 007324 447 KAGELEQKVAMLEVECATLQQELQDMEARLKRGQKK 482 (608)
Q Consensus 447 ra~eLeqqv~~lea~~esl~QELqDyk~ka~Ril~g 482 (608)
.+.+.++.......++.. ++++..|+++..-|.++
T Consensus 172 ~~k~~~~~w~~~~~~Lp~-~~~~~~yk~~v~~i~~~ 206 (555)
T TIGR03545 172 SLKAMQQKWKKRKKDLPN-KQDLEEYKKRLEAIKKK 206 (555)
T ss_pred HHHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHhc
Confidence 333344444444444442 77888888888888765
No 261
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=29.61 E-value=5.9e+02 Score=25.52 Aligned_cols=105 Identities=22% Similarity=0.261 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHhHHH
Q 007324 434 LARIQRIADERTAKAGELEQKVAMLEVECA----TLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRD 509 (608)
Q Consensus 434 L~~~QR~~~E~k~ra~eLeqqv~~lea~~e----sl~QELqDyk~ka~Ril~gs~e~Agqv~qle~~reev~~areq~~~ 509 (608)
+..+.+.+++|..++..--..+..++.+.+ ...+.|.+.+.++..|+...-..+. ...+.++.
T Consensus 75 ~~pI~~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ea~-------------~~~e~~~~ 141 (204)
T PRK09174 75 LPRIGGIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQAAREAAK-------------AKAEAERA 141 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHH
Confidence 455777778888777665555555444433 3455566666666666543322222 11111111
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q 007324 510 AENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYK 560 (608)
Q Consensus 510 ~e~a~qe~~ae~q~~e~El~~~Kqd~~~~Sr~s~~ELE~RlreLTE~LyqK 560 (608)
.+..+....+...+.++++.|+.+. .+|...--+++..++.|
T Consensus 142 --~a~~ea~~~l~~Ae~~I~~ek~~A~-------~el~~~a~e~A~~I~~K 183 (204)
T PRK09174 142 --AIEASLEKKLKEAEARIAAIKAKAM-------ADVGSIAEETAAAIVEQ 183 (204)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 1222333344445555555555544 44555555666665555
No 262
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=29.46 E-value=2.2e+02 Score=29.68 Aligned_cols=27 Identities=15% Similarity=0.246 Sum_probs=16.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007324 446 AKAGELEQKVAMLEVECATLQQELQDM 472 (608)
Q Consensus 446 ~ra~eLeqqv~~lea~~esl~QELqDy 472 (608)
.+...++.++..+++.++.++..|.++
T Consensus 158 ~~~~~~~~~l~~~~~~l~~~~~~l~~~ 184 (370)
T PRK11578 158 AQIGTIDAQIKRNQASLDTAKTNLDYT 184 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344455556666666666666666544
No 263
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=29.33 E-value=8.2e+02 Score=27.19 Aligned_cols=136 Identities=16% Similarity=0.191 Sum_probs=0.0
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhH-----HHHH-HHHHHHHHHHHHHHhHHHHHHhHHHH
Q 007324 444 RTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEA-----NQAI-QMQAWQDEVERARQGQRDAENKLSSL 517 (608)
Q Consensus 444 ~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka~Ril~gs~e~A-----gqv~-qle~~reev~~areq~~~~e~a~qe~ 517 (608)
++--.+-.|..|..++..+.-+...|.||..|..-+=...+.+- +++. +|-..+.+++.++-.-......+.-+
T Consensus 177 r~dt~r~Ae~eV~~~eerv~kAs~~L~~yr~kngvfdp~~qaevq~~Lvs~Le~eL~~iqaqL~tvks~m~~~nPqi~~L 256 (372)
T COG3524 177 RRDTVRFAEEEVQKAEERVKKASNDLTDYRIKNGVFDPKAQAEVQMSLVSKLEDELIVIQAQLDTVKSVMNPENPQIPGL 256 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhH
Q ss_pred HHHHHHHHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHH--HHHHHHH-----HHHHHhhhHHHHHHHHhH
Q 007324 518 EAEVQKMRVEMAAMKRDAE-HYSREEHMELEKRYRELT--DLLYYKQ-----TQLETMASEKAAAEFQLE 579 (608)
Q Consensus 518 ~ae~q~~e~El~~~Kqd~~-~~Sr~s~~ELE~RlreLT--E~LyqKQ-----TqLEaLatEKaAl~fQLE 579 (608)
.++.+.+|.+|.+.++-+- --+.++-+.+=..|..|+ -+|-+|| |-||+--.|-+-.+++||
T Consensus 257 karieSlrkql~qe~q~isag~~~~sl~~qaAefq~l~lE~~fAekay~AAl~SlEsArieAdrqq~yL~ 326 (372)
T COG3524 257 KARIESLRKQLLQEKQAISAGGSSQSLSNQAAEFQRLYLENTFAEKAYAAALTSLESARIEADRQQLYLE 326 (372)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhheee
No 264
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=29.29 E-value=3.9e+02 Score=24.06 Aligned_cols=52 Identities=21% Similarity=0.256 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007324 422 ELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDME 473 (608)
Q Consensus 422 elE~qlAeastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk 473 (608)
.||..+..|+..++.+|-.++|-|-+-..|.+.+-.+...-+.|.++-+.++
T Consensus 8 qLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk 59 (79)
T PRK15422 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLK 59 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4788877888888889999999999999999998887777666666655544
No 265
>PRK11677 hypothetical protein; Provisional
Probab=29.27 E-value=1.7e+02 Score=28.09 Aligned_cols=58 Identities=19% Similarity=0.365 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-hhhhh--hHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHH
Q 007324 515 SSLEAEVQKMRVEMAAMKRDAE-HYSRE--EHMELEKRYRELTDLLYYK-QTQLETMASEKA 572 (608)
Q Consensus 515 qe~~ae~q~~e~El~~~Kqd~~-~~Sr~--s~~ELE~RlreLTE~LyqK-QTqLEaLatEKa 572 (608)
..++.++++.+.|++.+|+++. ||... --..|-+-||+|-+-|-.- +..|..+-..++
T Consensus 32 ~~le~eLe~~k~ele~YkqeV~~HFa~TA~Ll~~L~~~Y~~Ly~HlA~~s~~Llp~~~~q~~ 93 (134)
T PRK11677 32 QALQYELEKNKAELEEYRQELVSHFARSAELLDTMAKDYRQLYQHMAKSSSELLPNLPAQDN 93 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Confidence 3477788888999999999998 65433 3367778888887777542 223354444445
No 266
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=29.09 E-value=7.9e+02 Score=29.23 Aligned_cols=134 Identities=13% Similarity=0.205 Sum_probs=0.0
Q ss_pred hhHHHHhhHHHhhhhcchhhHHHHHHHhhhhhhhhhhhhhhhHhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhh
Q 007324 251 DQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKV 330 (608)
Q Consensus 251 dql~ea~~ll~~~~~~g~ske~rL~rvc~~ls~rL~~lr~EN~QLEeLLr~E~~~~~S~~~r~k~lQ~ELs~ar~~v~k~ 330 (608)
..++-|+..++.-+..=+..-.+-..-+..+..++..++..-+-|.|=+..-.+.-..+..|++.+-.-++...=....+
T Consensus 554 ~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~A 633 (717)
T PF10168_consen 554 EKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEA 633 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHH
Q ss_pred hhhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHhhhhhhhhhhhhhhhhHH
Q 007324 331 ESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRM 387 (608)
Q Consensus 331 EsdlteALAAKdSqLavL~vrldeadq~l~~~e~~La~LQ~e~~RImqdh~~~e~q~ 387 (608)
|-+|.+=|-.=+.+|..|+.+++.++.++......++ ...++-...-..+++|+
T Consensus 634 Er~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~---~~~~~~~~s~~L~~~Q~ 687 (717)
T PF10168_consen 634 EREFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIE---SQKSPKKKSIVLSESQK 687 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccccccCCCccCCHHHH
No 267
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=28.97 E-value=5.7e+02 Score=25.15 Aligned_cols=127 Identities=20% Similarity=0.266 Sum_probs=65.2
Q ss_pred HHhhhhc-chhhHHHHHHHhhhhhhhhhhhhhhhHhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhh--------
Q 007324 260 LKTTIST-GQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKV-------- 330 (608)
Q Consensus 260 l~~~~~~-g~ske~rL~rvc~~ls~rL~~lr~EN~QLEeLLr~E~~~~~S~~~r~k~lQ~ELs~ar~~v~k~-------- 330 (608)
++.++.| +.||+ -+..+++.-+.++..++.|..++...++ .++.....|...--.||.+..-+
T Consensus 4 i~~ti~~ie~sK~-qIf~I~E~~R~E~~~l~~EL~evk~~v~-------~~I~evD~Le~~er~aR~rL~eVS~~f~~ys 75 (159)
T PF05384_consen 4 IKKTIDTIESSKE-QIFEIAEQARQEYERLRKELEEVKEEVS-------EVIEEVDKLEKRERQARQRLAEVSRNFDRYS 75 (159)
T ss_pred HHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Confidence 4444443 23333 3456667777777777777775544443 45555555555555555555444
Q ss_pred hhhHHHH----------HhcccchhHHHHHHHHHHHHHHHhhHhHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 007324 331 ESNLAEA----------LAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVER 400 (608)
Q Consensus 331 EsdlteA----------LAAKdSqLavL~vrldeadq~l~~~e~~La~LQ~e~~RImqdh~~~e~q~lqaLREeLa~AE~ 400 (608)
|.|+-+| |+.+..+..-|..|.|...+.+......++-.+.=+..| +=+|..|.-.|...-.
T Consensus 76 E~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi--------~vvl~yL~~dl~~v~~ 147 (159)
T PF05384_consen 76 EEDIKEAYEEAHELQVRLAMLREREKQLRERRDELERRLRNLEETIERAENLVSQI--------GVVLNYLSGDLQQVSE 147 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhhHHHHHH
Confidence 4444444 444444455555555555555555444444432222221 4456666666555544
Q ss_pred HH
Q 007324 401 RA 402 (608)
Q Consensus 401 rL 402 (608)
.+
T Consensus 148 ~~ 149 (159)
T PF05384_consen 148 QI 149 (159)
T ss_pred HH
Confidence 44
No 268
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=28.62 E-value=4.6e+02 Score=25.92 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=10.3
Q ss_pred HHhhhhhhhhhhhhhhhHhHHHHH
Q 007324 276 RVCAGLSSRLQEYKSENAQLEELL 299 (608)
Q Consensus 276 rvc~~ls~rL~~lr~EN~QLEeLL 299 (608)
+.|..|...+..++.+.+.|++-|
T Consensus 69 ~~~~~l~~~~~~~~~~i~~l~~~i 92 (188)
T PF03962_consen 69 NKLEKLQKEIEELEKKIEELEEKI 92 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333
No 269
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=28.07 E-value=1.1e+03 Score=28.13 Aligned_cols=85 Identities=25% Similarity=0.400 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHH---------
Q 007324 453 QKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQK--------- 523 (608)
Q Consensus 453 qqv~~lea~~esl~QELqDyk~ka~Ril~gs~e~Agqv~qle~~reev~~areq~~~~e~a~qe~~ae~q~--------- 523 (608)
..|..++.++..|++.|.-+..+....-..++.....+.+|...+..++.+++..+++.. ...+.+++..
T Consensus 70 ~ev~~l~~ea~~L~~~~~~v~~~~~~~e~~t~~s~~~L~~ld~vK~rm~~a~~~L~EA~~-w~~l~~~v~~~~~~~d~~~ 148 (766)
T PF10191_consen 70 REVDRLRQEAASLQEQMASVQEEIKAVEQDTAQSMAQLAELDSVKSRMEAARETLQEADN-WSTLSAEVDDLFESGDIAK 148 (766)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhcCCHHH
Confidence 334455556666666666666555443333445556666777777777777777776642 3334333322
Q ss_pred HHHHHHHHHHHHhhh
Q 007324 524 MRVEMAAMKRDAEHY 538 (608)
Q Consensus 524 ~e~El~~~Kqd~~~~ 538 (608)
+-.=|+.|++.+...
T Consensus 149 ~a~~l~~m~~sL~~l 163 (766)
T PF10191_consen 149 IADRLAEMQRSLAVL 163 (766)
T ss_pred HHHHHHHHHHHHHHH
Confidence 222266666666643
No 270
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=28.05 E-value=4.3e+02 Score=23.44 Aligned_cols=23 Identities=17% Similarity=0.166 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHH
Q 007324 432 MALARIQRIADERTAKAGELEQK 454 (608)
Q Consensus 432 tAL~~~QR~~~E~k~ra~eLeqq 454 (608)
..|+.+++.+.....+...|...
T Consensus 20 ~~la~~~~~~~~~~~~l~~l~~~ 42 (141)
T TIGR02473 20 LELAKAQAEFERLETQLQQLIKY 42 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 271
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=28.04 E-value=3.4e+02 Score=28.95 Aligned_cols=70 Identities=21% Similarity=0.418 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhh------hHHHHHHHHHHHHHHHHHHHHH
Q 007324 490 AIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSRE------EHMELEKRYRELTDLLYYKQTQ 563 (608)
Q Consensus 490 v~qle~~reev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd~~~~Sr~------s~~ELE~RlreLTE~LyqKQTq 563 (608)
+...+.++.++.....++-.- +-.+++.+|-+=.++.-+=+.-+.. +-+||++||..| ||+
T Consensus 170 ~~~v~~l~~q~~k~~~~qv~~------in~qlErLRL~krrlQl~g~Ld~~~q~~~~ae~seLq~r~~~l-------~~~ 236 (289)
T COG4985 170 LLEVETLRDQVDKMVEQQVRV------INSQLERLRLEKRRLQLNGQLDDEFQQHYVAEKSELQKRLAQL-------QTE 236 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHH-------HHH
Q ss_pred HHHhhhHHH
Q 007324 564 LETMASEKA 572 (608)
Q Consensus 564 LEaLatEKa 572 (608)
|-+|-+|++
T Consensus 237 L~~L~~e~~ 245 (289)
T COG4985 237 LDALRAELE 245 (289)
T ss_pred HHHHhhhhh
No 272
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=27.93 E-value=6.6e+02 Score=25.54 Aligned_cols=32 Identities=19% Similarity=0.269 Sum_probs=17.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007324 447 KAGELEQKVAMLEVECATLQQELQDMEARLKR 478 (608)
Q Consensus 447 ra~eLeqqv~~lea~~esl~QELqDyk~ka~R 478 (608)
....++.++..+++.+..++.++..|+.-..+
T Consensus 98 ~~~~~~~~~~~~~~~l~~a~~~~~R~~~L~~~ 129 (327)
T TIGR02971 98 DVAAQQATLNRLEAELETAQREVDRYRSLFRD 129 (327)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34444555555556666666666555554443
No 273
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=27.76 E-value=1.2e+03 Score=28.62 Aligned_cols=128 Identities=20% Similarity=0.310 Sum_probs=63.9
Q ss_pred hhHHHHHhcccchhHHHHH-------HHHHHHHHHHh--hHhHHH----HHhhhhhhhhhhhhhh---hhH------HHH
Q 007324 332 SNLAEALAAKNSEIETLVS-------SIDALKKQAAL--SEGNLA----SLQMNMESIMRNRELT---ETR------MIQ 389 (608)
Q Consensus 332 sdlteALAAKdSqLavL~v-------rldeadq~l~~--~e~~La----~LQ~e~~RImqdh~~~---e~q------~lq 389 (608)
|-|.++|+-||+.+--+.. +|.-+...+.. +-+.|. .|+..+.-+...|... +++ -+|
T Consensus 94 dklE~~Lankda~lrq~eekn~slqerLelaE~~l~qs~rae~lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~q 173 (916)
T KOG0249|consen 94 DKLENELANKDADLRQNEEKNRSLQERLELAEPKLQQSLRAETLPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLE 173 (916)
T ss_pred HHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhHHhhhhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 7788899999987644433 33333332211 123333 3444444444444443 222 234
Q ss_pred HHHHHHHHHHHHHHHHHHH--------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 007324 390 ALREELASVERRAEEERAA--------------HNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKV 455 (608)
Q Consensus 390 aLREeLa~AE~rL~~Eq~a--------------h~Atr~aamERE~elE~qlAeastAL~~~QR~~~E~k~ra~eLeqqv 455 (608)
-+-.+|+.|-.+++.+-+. |.--||++.++-..|+.+++..-.- ..++..--
T Consensus 174 e~naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~--------------l~~~~~~k 239 (916)
T KOG0249|consen 174 ELNAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQ--------------LEEMRHDK 239 (916)
T ss_pred HHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHH
Confidence 4555677777777665443 2333455555555555554444433 33444444
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 007324 456 AMLEVECATLQQELQDME 473 (608)
Q Consensus 456 ~~lea~~esl~QELqDyk 473 (608)
..+.-..+.|+|++.-++
T Consensus 240 ~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 240 DKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHhhhHHHHHHHHHHHH
Confidence 444455555555555555
No 274
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=27.39 E-value=4.3e+02 Score=26.86 Aligned_cols=26 Identities=31% Similarity=0.400 Sum_probs=12.2
Q ss_pred HHHHHHhhhHHHHHHHHhHHHHHHHh
Q 007324 561 QTQLETMASEKAAAEFQLEKEMNRLQ 586 (608)
Q Consensus 561 QTqLEaLatEKaAl~fQLER~eqq~k 586 (608)
||.=+++--|=.-|+||||--..+++
T Consensus 151 QsLR~avRqElqELE~QL~DRl~~l~ 176 (179)
T PF14723_consen 151 QSLRSAVRQELQELEFQLEDRLLQLR 176 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444445555555554444
No 275
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=26.94 E-value=2e+02 Score=26.70 Aligned_cols=42 Identities=24% Similarity=0.465 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-hhhhh--hHHHHHHHHHHHHHHH
Q 007324 516 SLEAEVQKMRVEMAAMKRDAE-HYSRE--EHMELEKRYRELTDLL 557 (608)
Q Consensus 516 e~~ae~q~~e~El~~~Kqd~~-~~Sr~--s~~ELE~RlreLTE~L 557 (608)
.++.++++.+.|++.+|+++. ||... --..|-+.|+.|-+-|
T Consensus 29 ~l~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~~l~~~Y~~l~~Hl 73 (128)
T PF06295_consen 29 KLEQELEQAKQELEQYKQEVNDHFAQTAELLDNLTQDYQKLYQHL 73 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888999999999998 55443 2366677777665544
No 276
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=26.54 E-value=79 Score=26.45 Aligned_cols=29 Identities=24% Similarity=0.318 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhhhH
Q 007324 306 SRSYEARIKQLEQELSVYKSEVTKVESNL 334 (608)
Q Consensus 306 ~~S~~~r~k~lQ~ELs~ar~~v~k~Esdl 334 (608)
..++++|++.|.+.|..+..+..+.|...
T Consensus 27 ~ltiEqRLa~LE~rL~~ae~ra~~ae~~~ 55 (60)
T PF11471_consen 27 PLTIEQRLAALEQRLQAAEQRAQAAEARA 55 (60)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34688888888888888877777766544
No 277
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=26.44 E-value=1.1e+02 Score=33.09 Aligned_cols=55 Identities=20% Similarity=0.329 Sum_probs=28.4
Q ss_pred HHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q 007324 499 EVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELT 554 (608)
Q Consensus 499 ev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd~~~~Sr~s~~ELE~RlreLT 554 (608)
.|..+...+-.....+..+...+..|..++.-||.++-- ....-+.||+|+..|.
T Consensus 99 sVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt-~aL~ItdLe~RV~~LE 153 (326)
T PF04582_consen 99 SVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVST-QALNITDLESRVKALE 153 (326)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred hHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhh-hcchHhhHHHHHHHHh
Confidence 344455555667777888888888999999999999863 1224689999998763
No 278
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=26.34 E-value=6.8e+02 Score=29.82 Aligned_cols=59 Identities=20% Similarity=0.212 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHhhHhHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 007324 346 ETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEE 404 (608)
Q Consensus 346 avL~vrldeadq~l~~~e~~La~LQ~e~~RImqdh~~~e~q~lqaLREeLa~AE~rL~~ 404 (608)
..+...+.++.......+..++.++..+..++..-..--.+++...+.++...-+.++.
T Consensus 532 ~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a~~~~~~~i~~lk~ 590 (771)
T TIGR01069 532 EHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKEVESIIRELKE 590 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444445555555566666666666655555566666666665555555543
No 279
>PRK10698 phage shock protein PspA; Provisional
Probab=26.16 E-value=6.9e+02 Score=25.23 Aligned_cols=25 Identities=8% Similarity=0.120 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCC
Q 007324 458 LEVECATLQQELQDMEARLKRGQKK 482 (608)
Q Consensus 458 lea~~esl~QELqDyk~ka~Ril~g 482 (608)
++..++.+.....+|+.+|.-.+.+
T Consensus 57 ~er~~~~~~~~~~~~e~kA~~Al~~ 81 (222)
T PRK10698 57 LTRRIEQAEAQQVEWQEKAELALRK 81 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 3344444444455555555555543
No 280
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=26.12 E-value=4.7e+02 Score=30.11 Aligned_cols=80 Identities=18% Similarity=0.185 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhh---------hhHHHHHHHHHHHHHHHHHH
Q 007324 490 AIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSR---------EEHMELEKRYRELTDLLYYK 560 (608)
Q Consensus 490 v~qle~~reev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd~~~~Sr---------~s~~ELE~RlreLTE~LyqK 560 (608)
|+.+-.....+..+...+..+...+..+...+..+..+|..++.|+++.-+ .-+.-|-+.|+.|-++|-.-
T Consensus 22 i~~l~~s~~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~Lqvq~~N~k~L~~eL~~Ll~~l~i~ 101 (701)
T PF09763_consen 22 IHSLLESEKQVNSLMEYLDEALAECDELESWLSLYDVELNSVRDDIEYIESQNNGLQVQSANQKLLLNELENLLDTLSIP 101 (701)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHhcCCC
Confidence 666767777788888888889889999999999999999999999996622 24467888888888888888
Q ss_pred HHHHHHhhh
Q 007324 561 QTQLETMAS 569 (608)
Q Consensus 561 QTqLEaLat 569 (608)
...|+.|..
T Consensus 102 ~~~l~~L~~ 110 (701)
T PF09763_consen 102 EEHLEALRN 110 (701)
T ss_pred HHHHHHHhc
Confidence 888888876
No 281
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=26.02 E-value=2.5e+02 Score=28.85 Aligned_cols=58 Identities=12% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHhhccCCCchhHHHHH-HHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHH
Q 007324 474 ARLKRGQKKSPEEANQAI-QMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAM 531 (608)
Q Consensus 474 ~ka~Ril~gs~e~Agqv~-qle~~reev~~areq~~~~e~a~qe~~ae~q~~e~El~~~ 531 (608)
.+..|++...+..-.++. ||+.++.+|.++|.++..+.-.++.+..+-.++-.+|.+.
T Consensus 43 ~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r 101 (263)
T PRK10803 43 TQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSL 101 (263)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 282
>PRK02793 phi X174 lysis protein; Provisional
Probab=25.98 E-value=2.2e+02 Score=24.33 Aligned_cols=51 Identities=25% Similarity=0.317 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHHHHHHHhh
Q 007324 308 SYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALS 362 (608)
Q Consensus 308 S~~~r~k~lQ~ELs~ar~~v~k~EsdlteALAAKdSqLavL~vrldeadq~l~~~ 362 (608)
++.+|+.+|+.-++-- +..=+.|.++++....+|..|...+.....++...
T Consensus 5 ~~e~Ri~~LE~~lafQ----e~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 5 SLEARLAELESRLAFQ----EITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred hHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4677888877776433 33337788899998888888877776665555443
No 283
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=25.88 E-value=2.6e+02 Score=23.93 Aligned_cols=67 Identities=21% Similarity=0.320 Sum_probs=0.0
Q ss_pred hhHHHHHhcccchhHHHHHHHHHHHHH-------HHhhHhHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 007324 332 SNLAEALAAKNSEIETLVSSIDALKKQ-------AALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVE 399 (608)
Q Consensus 332 sdlteALAAKdSqLavL~vrldeadq~-------l~~~e~~La~LQ~e~~RImqdh~~~e~q~lqaLREeLa~AE 399 (608)
++|..-|+.||.+|+.|...-+..-.. +.-.......++.....+- +.-.....-++.|+++|..+|
T Consensus 1 ~sl~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~-~~~~~~e~~~~~l~~~l~~~E 74 (74)
T PF12329_consen 1 SSLEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELK-KKLEELEKELESLEERLKRAE 74 (74)
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhccC
No 284
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=25.23 E-value=8.4e+02 Score=26.62 Aligned_cols=87 Identities=22% Similarity=0.267 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhcc-CC-CchhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHH
Q 007324 450 ELEQKVAMLEVECATLQQELQDME-------ARLKRGQ-KK-SPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAE 520 (608)
Q Consensus 450 eLeqqv~~lea~~esl~QELqDyk-------~ka~Ril-~g-s~e~Agqv~qle~~reev~~areq~~~~e~a~qe~~ae 520 (608)
+...+.+.|..++..|+|.|.+.. .+..+-. ++ +....+..++-+.|=.+++.++.++...+.-++.+--|
T Consensus 76 ~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDE 155 (319)
T PF09789_consen 76 ESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDE 155 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455677777888888876633 2222211 22 22222334666778888888888887777766666444
Q ss_pred HHHHHHHHHHHHHHHh
Q 007324 521 VQKMRVEMAAMKRDAE 536 (608)
Q Consensus 521 ~q~~e~El~~~Kqd~~ 536 (608)
.+.+-.|-..+|.-++
T Consensus 156 keEl~~ERD~yk~K~~ 171 (319)
T PF09789_consen 156 KEELVTERDAYKCKAH 171 (319)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444444
No 285
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.90 E-value=1.2e+03 Score=27.68 Aligned_cols=51 Identities=18% Similarity=0.277 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHh----hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 007324 521 VQKMRVEMAAMKRDAE----HYSREEHMELEKRYRELTDLLYYKQTQLETMASEKA 572 (608)
Q Consensus 521 ~q~~e~El~~~Kqd~~----~~Sr~s~~ELE~RlreLTE~LyqKQTqLEaLatEKa 572 (608)
..++=.+|++-||+++ ..+.--+++-|++-| |+-+-+.||.+||..-.+|+
T Consensus 516 ~eel~~alektkQel~~tkarl~stqqslaEke~H-L~nLr~errk~Lee~lemK~ 570 (654)
T KOG4809|consen 516 IEELMNALEKTKQELDATKARLASTQQSLAEKEAH-LANLRIERRKQLEEILEMKK 570 (654)
T ss_pred HHHHHHHHHHHhhChhhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhh
Confidence 3344556777788777 223333566677766 88899999999999888884
No 286
>PRK02119 hypothetical protein; Provisional
Probab=24.85 E-value=2.9e+02 Score=23.72 Aligned_cols=37 Identities=30% Similarity=0.388 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHhhhh
Q 007324 546 LEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQ 589 (608)
Q Consensus 546 LE~RlreLTE~LyqKQTqLEaLatEKaAl~fQLER~eqq~k~~q 589 (608)
+|.-+.+|-+.++.=|.++..| .-+|..+-++++++.
T Consensus 21 QE~tie~LN~~v~~Qq~~id~L-------~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 21 QENLLEELNQALIEQQFVIDKM-------QVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhc
Confidence 4455556666666666555443 344555555555544
No 287
>PRK00295 hypothetical protein; Provisional
Probab=24.71 E-value=2.4e+02 Score=23.88 Aligned_cols=51 Identities=25% Similarity=0.294 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHHHHHHHhh
Q 007324 308 SYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALS 362 (608)
Q Consensus 308 S~~~r~k~lQ~ELs~ar~~v~k~EsdlteALAAKdSqLavL~vrldeadq~l~~~ 362 (608)
|+.+|+.+|+.-++-. +..=++|.++++...-+|..|...+.....++...
T Consensus 2 ~~e~Ri~~LE~kla~q----E~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 2 SLEERVTELESRQAFQ----DDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred CHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4667777777666333 22227788888888888888777776665555443
No 288
>PRK02119 hypothetical protein; Provisional
Probab=24.56 E-value=2.3e+02 Score=24.34 Aligned_cols=52 Identities=17% Similarity=0.271 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHHHHHHHh
Q 007324 306 SRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAAL 361 (608)
Q Consensus 306 ~~S~~~r~k~lQ~ELs~ar~~v~k~EsdlteALAAKdSqLavL~vrldeadq~l~~ 361 (608)
+..+.+|+..|+.-++-- +..=+.|.++++...-+|..|...+.....++..
T Consensus 4 ~~~~e~Ri~~LE~rla~Q----E~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 4 QQNLENRIAELEMKIAFQ----ENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred hHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455677777777766433 3333778888988888888887777666655544
No 289
>PRK00736 hypothetical protein; Provisional
Probab=24.30 E-value=2.2e+02 Score=24.09 Aligned_cols=50 Identities=24% Similarity=0.327 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHHHHHHHh
Q 007324 308 SYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAAL 361 (608)
Q Consensus 308 S~~~r~k~lQ~ELs~ar~~v~k~EsdlteALAAKdSqLavL~vrldeadq~l~~ 361 (608)
|+.+|+..|+.-+.-- +..=+.|.++++...-+|..|...+.....++..
T Consensus 2 ~~e~Ri~~LE~klafq----e~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 2 DAEERLTELEIRVAEQ----EKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred CHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777776666333 2233678888888888887777776666555544
No 290
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.96 E-value=3.2e+02 Score=31.49 Aligned_cols=88 Identities=30% Similarity=0.385 Sum_probs=54.8
Q ss_pred hhHHHHhhHHHhhhhcchhhHHHHHHHhhhhhhhhhhhhhhhHhHHHHHHH---H------HH-HhHHHHHHHHHHHHHH
Q 007324 251 DQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVA---E------RE-LSRSYEARIKQLEQEL 320 (608)
Q Consensus 251 dql~ea~~ll~~~~~~g~ske~rL~rvc~~ls~rL~~lr~EN~QLEeLLr~---E------~~-~~~S~~~r~k~lQ~EL 320 (608)
+-|..|+.|+|+.|++.+.|...+.+-+ +-|++.+.---+|+|||-. | .+ .|.-+-.|..+++.-|
T Consensus 188 eDLqaANkLIK~lVkeee~k~eKiskR~----~aleev~n~vk~l~em~l~~s~eg~a~pd~E~~lq~v~~~ce~lr~tl 263 (594)
T KOG1086|consen 188 EDLQAANKLIKTLVKEEEHKLEKISKRV----KALEEVNNNVKLLEEMLLDYSQEGNASPDNELLLQEVYNRCEQLRPTL 263 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999998776655544333 3345555555678888862 1 11 3666677777777777
Q ss_pred hhhhhhhhhhhhhHHHHHhccc
Q 007324 321 SVYKSEVTKVESNLAEALAAKN 342 (608)
Q Consensus 321 s~ar~~v~k~EsdlteALAAKd 342 (608)
=+.-+..+--+..|.|-|-|.|
T Consensus 264 frlaset~dnD~aL~eILqanD 285 (594)
T KOG1086|consen 264 FRLASETEDNDPALAEILQAND 285 (594)
T ss_pred HHhhcccccCcHHHHHHHhhhh
Confidence 5553333333445555554433
No 291
>PTZ00491 major vault protein; Provisional
Probab=23.77 E-value=1.4e+03 Score=28.21 Aligned_cols=15 Identities=27% Similarity=0.527 Sum_probs=8.8
Q ss_pred CCCCCCCcccccccC
Q 007324 169 PPSPLPPKEMGIVNE 183 (608)
Q Consensus 169 p~p~lp~k~~e~~~e 183 (608)
|....|+..++|+.-
T Consensus 360 P~~YIP~~~v~VV~~ 374 (850)
T PTZ00491 360 PCEYIPPVLVEVVER 374 (850)
T ss_pred CcccCCCCcEEEEEe
Confidence 444566666666653
No 292
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=23.52 E-value=7.9e+02 Score=24.97 Aligned_cols=35 Identities=23% Similarity=0.273 Sum_probs=28.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 007324 446 AKAGELEQKVAMLEVECATLQQELQDMEARLKRGQ 480 (608)
Q Consensus 446 ~ra~eLeqqv~~lea~~esl~QELqDyk~ka~Ril 480 (608)
+....+++++..+++.+..++.+|..++....|..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~R~~ 124 (327)
T TIGR02971 90 RAAAKLFKDVAAQQATLNRLEAELETAQREVDRYR 124 (327)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457788888899999999999998888887775
No 293
>PF04394 DUF536: Protein of unknown function, DUF536; InterPro: IPR007489 This is a C-terminal region from several bacterial proteins of unknown function that may be involved in a theta-type replication mechanism.
Probab=23.35 E-value=1.6e+02 Score=23.63 Aligned_cols=40 Identities=28% Similarity=0.388 Sum_probs=35.1
Q ss_pred HHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHhhhhh
Q 007324 335 AEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNME 374 (608)
Q Consensus 335 teALAAKdSqLavL~vrldeadq~l~~~e~~La~LQ~e~~ 374 (608)
.+.|..||++|+.+-.=||--.++.......++.|+.+..
T Consensus 2 ~~Ql~~kd~qI~~l~kLLDQQQ~L~L~~~k~le~L~~el~ 41 (45)
T PF04394_consen 2 DEQLEEKDKQIEELQKLLDQQQQLALQDNKKLEELKAELE 41 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999999999977654
No 294
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=23.32 E-value=3.4e+02 Score=21.41 Aligned_cols=38 Identities=34% Similarity=0.472 Sum_probs=28.1
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007324 437 IQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEA 474 (608)
Q Consensus 437 ~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ 474 (608)
+.|.-.-.+.+..+|++++..|+.....|.+++..++.
T Consensus 16 A~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 16 ARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555556677788888888888888888888877653
No 295
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=23.23 E-value=3.3e+02 Score=28.68 Aligned_cols=75 Identities=12% Similarity=0.118 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHH
Q 007324 450 ELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMA 529 (608)
Q Consensus 450 eLeqqv~~lea~~esl~QELqDyk~ka~Ril~gs~e~Agqv~qle~~reev~~areq~~~~e~a~qe~~ae~q~~e~El~ 529 (608)
+++.++..+++.++.++.++...+....|...=-..++.. +.+++.++- .+...+++++.+++.++
T Consensus 96 ~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~~~~is-------~~~~d~a~~-------~~~~a~a~~~~a~a~l~ 161 (385)
T PRK09859 96 PLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVS-------RQDYDTART-------QLNEAEANVTVAKAAVE 161 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcC-------HHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 4555566666777666666666666555554111111110 112333332 22333445555566666
Q ss_pred HHHHHHhhh
Q 007324 530 AMKRDAEHY 538 (608)
Q Consensus 530 ~~Kqd~~~~ 538 (608)
..+..+.++
T Consensus 162 ~a~~~L~~t 170 (385)
T PRK09859 162 QATINLQYA 170 (385)
T ss_pred HHHHhhCCC
Confidence 666666643
No 296
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=23.07 E-value=5.8e+02 Score=27.86 Aligned_cols=39 Identities=15% Similarity=0.187 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHH
Q 007324 543 HMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKE 581 (608)
Q Consensus 543 ~~ELE~RlreLTE~LyqKQTqLEaLatEKaAl~fQLER~ 581 (608)
..+...++..+...+......++.|-.+...+.-+|++.
T Consensus 370 ~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 370 PPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355666777777777666666776666666665555555
No 297
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=23.05 E-value=6.4e+02 Score=23.78 Aligned_cols=66 Identities=23% Similarity=0.316 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHhhhhhhhhhhhhh
Q 007324 306 SRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL 382 (608)
Q Consensus 306 ~~S~~~r~k~lQ~ELs~ar~~v~k~EsdlteALAAKdSqLavL~vrldeadq~l~~~e~~La~LQ~e~~RImqdh~~ 382 (608)
-.++..++..|+.+|-..++....| ..+=..|+..++...++..++...+.+||....-+.++-.+
T Consensus 11 ~~el~n~La~Le~slE~~K~S~~eL-----------~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 11 QNELQNRLASLERSLEDEKTSQGEL-----------AKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHH-----------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888888887777766666 12223377777777788888888888888888888777665
No 298
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=22.92 E-value=4.1e+02 Score=21.45 Aligned_cols=36 Identities=31% Similarity=0.478 Sum_probs=22.9
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007324 442 DERTAKAGELEQKVAMLEVECATLQQELQDMEARLK 477 (608)
Q Consensus 442 ~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka~ 477 (608)
.-.+..+.+|+.+|..+......|+.++..++....
T Consensus 22 ~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~ 57 (64)
T PF00170_consen 22 QRKKQYIEELEEKVEELESENEELKKELEQLKKEIQ 57 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456667777777777777777766666665543
No 299
>PLN02939 transferase, transferring glycosyl groups
Probab=22.82 E-value=1.6e+03 Score=28.20 Aligned_cols=171 Identities=22% Similarity=0.257 Sum_probs=85.9
Q ss_pred hhhhhhhhhhhhhhhHhHHHHHHHHHHH-------hHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHH
Q 007324 278 CAGLSSRLQEYKSENAQLEELLVAEREL-------SRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVS 350 (608)
Q Consensus 278 c~~ls~rL~~lr~EN~QLEeLLr~E~~~-------~~S~~~r~k~lQ~ELs~ar~~v~k~EsdlteALAAKdSqLavL~v 350 (608)
+--|+.+|.-||.||- +|.+-.+. ++....++--|..|.+...+.+-..|+-+..|-+ .-+.|..|+.
T Consensus 221 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 295 (977)
T PLN02939 221 VHSLSKELDVLKEENM----LLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQE-DVSKLSPLQY 295 (977)
T ss_pred cccHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhccchhH
Confidence 3458999999999999 66554444 6666777777788887777777766766644322 1122222221
Q ss_pred HHHHHHHHHHhhHhHHHHHhhhhhhhhhhhhhhh---hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 007324 351 SIDALKKQAALSEGNLASLQMNMESIMRNRELTE---TRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRA 427 (608)
Q Consensus 351 rldeadq~l~~~e~~La~LQ~e~~RImqdh~~~e---~q~lqaLREeLa~AE~rL~~Eq~ah~Atr~aamERE~elE~ql 427 (608)
+. .-++++-||.=..+. .++.+-- -+--|.||.+...-|+-|++--.++| +..+++ +=+|-
T Consensus 296 --~~-------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~ 359 (977)
T PLN02939 296 --DC-------WWEKVENLQDLLDRA-TNQVEKAALVLDQNQDLRDKVDKLEASLKEANVSKF--SSYKVE----LLQQK 359 (977)
T ss_pred --HH-------HHHHHHHHHHHHHHH-HHHHHHHHHHhccchHHHHHHHHHHHHHHHhhHhhh--hHHHHH----HHHHH
Confidence 11 112222222212211 1111110 11124566677666777765555554 222222 21111
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007324 428 AEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKR 478 (608)
Q Consensus 428 AeastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka~R 478 (608)
.....- +++ +.-.++..++....++|+..++-|...+....+
T Consensus 360 ~~~~~~--~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (977)
T PLN02939 360 LKLLEE--RLQ-------ASDHEIHSYIQLYQESIKEFQDTLSKLKEESKK 401 (977)
T ss_pred HHHHHH--HHH-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 111110 111 122355666777777777777777776555443
No 300
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=22.74 E-value=6e+02 Score=26.10 Aligned_cols=110 Identities=22% Similarity=0.226 Sum_probs=77.1
Q ss_pred hhHHHhhhhcCCCCcchhhhHHHHhhHHHhhhhcchhhHH----HHHHHhhhhhhhhhhhhhhhHhHHHHHHHHHHHhHH
Q 007324 233 NKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEA----RLARVCAGLSSRLQEYKSENAQLEELLVAERELSRS 308 (608)
Q Consensus 233 n~k~qq~~KaD~sp~K~qdql~ea~~ll~~~~~~g~ske~----rL~rvc~~ls~rL~~lr~EN~QLEeLLr~E~~~~~S 308 (608)
|.++.+ -+-+.-+|.-|||.++=.+. ...-|.+|+- -+-+.+ -+..|+-|..+|+-|++-++.=...|++
T Consensus 31 ~lq~e~--lgktavqk~Ld~La~~Gki~--~K~YGKqKIY~a~QDqF~~~--~~eel~~ld~~i~~l~ek~q~l~~t~s~ 104 (201)
T KOG4603|consen 31 NLQREH--LGKTAVQKTLDQLAQQGKIK--EKMYGKQKIYFADQDQFDMV--SDEELQVLDGKIVALTEKVQSLQQTCSY 104 (201)
T ss_pred HHHHHh--ccchHHHHHHHHHHHcCchh--HHhccceeeEeecHHhhcCC--ChHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 555444 45566678888888764442 2445777752 222222 2468999999999999999888888999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHhh
Q 007324 309 YEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQM 371 (608)
Q Consensus 309 ~~~r~k~lQ~ELs~ar~~v~k~EsdlteALAAKdSqLavL~vrldeadq~l~~~e~~La~LQ~ 371 (608)
+.+.||.|+.-|+ ++.+..++++.+..+.--++.|..+.+
T Consensus 105 veaEik~L~s~Lt-----------------------~eemQe~i~~L~kev~~~~erl~~~k~ 144 (201)
T KOG4603|consen 105 VEAEIKELSSALT-----------------------TEEMQEEIQELKKEVAGYRERLKNIKA 144 (201)
T ss_pred HHHHHHHHHHhcC-----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999887762 455666777777777777777776643
No 301
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=22.64 E-value=1.6e+03 Score=28.33 Aligned_cols=46 Identities=13% Similarity=0.184 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007324 429 EASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARL 476 (608)
Q Consensus 429 eastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka 476 (608)
..-..|.++|| +.-+.+...+++++..+...+..-+++..+...+.
T Consensus 200 ~~~~~L~~~q~--dl~~~~~~~l~~~~~~Lq~~in~kR~~~se~~~~~ 245 (1109)
T PRK10929 200 NNRQELARLRS--ELAKKRSQQLDAYLQALRNQLNSQRQREAERALES 245 (1109)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555 56889999999999999999888877776654433
No 302
>PRK02793 phi X174 lysis protein; Provisional
Probab=22.47 E-value=3.3e+02 Score=23.26 Aligned_cols=37 Identities=27% Similarity=0.390 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHH
Q 007324 546 LEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEM 582 (608)
Q Consensus 546 LE~RlreLTE~LyqKQTqLEaLatEKaAl~fQLER~e 582 (608)
+|.|+.+|=.-|.+=.-.+|.|...=..++-++.++.
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~ 42 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLR 42 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444443333333
No 303
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=22.35 E-value=4.1e+02 Score=25.12 Aligned_cols=66 Identities=26% Similarity=0.265 Sum_probs=0.0
Q ss_pred hhHHHHhhHHHhhhhcchhhHHHHHHHhhhhhhhh-hhhhhhhHhHHHHHHHHHHHhHHHHHHHHHH
Q 007324 251 DQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRL-QEYKSENAQLEELLVAERELSRSYEARIKQL 316 (608)
Q Consensus 251 dql~ea~~ll~~~~~~g~ske~rL~rvc~~ls~rL-~~lr~EN~QLEeLLr~E~~~~~S~~~r~k~l 316 (608)
..|.++..-.........+....|-..+..++... ...+.|..-|=-||.-.-.++..|..|++.|
T Consensus 44 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~kl~~E~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk~L 110 (136)
T PF04871_consen 44 KELKEAEQAAEAELEELASEVKELEAEKEKLKEEARKEAQSELDDLLVLLGDLEEKRKKYKERLKEL 110 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHc
No 304
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=22.28 E-value=1.1e+03 Score=25.97 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 007324 450 ELEQKVAMLEVECATLQQELQD 471 (608)
Q Consensus 450 eLeqqv~~lea~~esl~QELqD 471 (608)
+++-+++.+++.++-++..|..
T Consensus 187 ~~~~~v~~a~a~~~~A~l~L~~ 208 (352)
T COG1566 187 GAQAQVASAEAALDQAKLDLER 208 (352)
T ss_pred cchhHHHHHHHHHHHHHHHhhC
Confidence 3344455555555555555544
No 305
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=22.24 E-value=3.2e+02 Score=26.38 Aligned_cols=22 Identities=27% Similarity=0.277 Sum_probs=17.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHH
Q 007324 537 HYSREEHMELEKRYRELTDLLY 558 (608)
Q Consensus 537 ~~Sr~s~~ELE~RlreLTE~Ly 558 (608)
++-+..+..||+|+++|...|-
T Consensus 50 ~aak~~q~~~e~RI~~L~~~L~ 71 (158)
T PRK05892 50 IQRADELARLDDRINELDRRLR 71 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3356678999999999998774
No 306
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.03 E-value=9.8e+02 Score=25.54 Aligned_cols=49 Identities=20% Similarity=0.304 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhccCC
Q 007324 434 LARIQRIADERTAKAGELEQKVAMLEVECATLQQELQD----MEARLKRGQKK 482 (608)
Q Consensus 434 L~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqD----yk~ka~Ril~g 482 (608)
+-.++-+.++-+.+.+.+++.++.++...+.++..+.+ ++.++|-.+.-
T Consensus 61 i~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~n 113 (265)
T COG3883 61 IEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQVN 113 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33467778888888888888888888888888777766 78888888733
No 307
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=21.96 E-value=1.2e+03 Score=26.57 Aligned_cols=40 Identities=15% Similarity=0.308 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhH
Q 007324 448 AGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEA 487 (608)
Q Consensus 448 a~eLeqqv~~lea~~esl~QELqDyk~ka~Ril~gs~e~A 487 (608)
...|-+-++.-+-.|-....=+..|--+.+|++++.|.++
T Consensus 176 ~~afn~tikife~q~~~~e~~~ka~~d~~~~eqG~qg~~e 215 (464)
T KOG4637|consen 176 IEAFNETIKIFEEQCGTQENLSKAYIDRFRREQGSQGNSE 215 (464)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHhccCCchH
Confidence 3345566677777788888888889999999998877544
No 308
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=21.49 E-value=1e+03 Score=25.41 Aligned_cols=73 Identities=19% Similarity=0.309 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhh------hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007324 494 QAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSR------EEHMELEKRYRELTDLLYYKQTQLET 566 (608)
Q Consensus 494 e~~reev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd~~~~Sr------~s~~ELE~RlreLTE~LyqKQTqLEa 566 (608)
...+.+++..+.++.....--..+.+.+++-..|++|.+.-+.-.++ -+...||..|+.|=+.-+.|=--|.-
T Consensus 172 ~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRNl~y 250 (267)
T PF10234_consen 172 KAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRNLDY 250 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 45566666666666666666666666677777777777776662221 15577899999998888777655543
No 309
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=21.20 E-value=5.8e+02 Score=24.12 Aligned_cols=85 Identities=21% Similarity=0.219 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhhhhHhHHHHHHHHHHH--hHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHH
Q 007324 278 CAGLSSRLQEYKSENAQLEELLVAEREL--SRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDAL 355 (608)
Q Consensus 278 c~~ls~rL~~lr~EN~QLEeLLr~E~~~--~~S~~~r~k~lQ~ELs~ar~~v~k~EsdlteALAAKdSqLavL~vrldea 355 (608)
+..|..+|..++.++..|+.-|.+=... ...+...+.+|..++.....++....++-.. .-..++..+...+..+
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~---vs~ee~~~~~~~~~~~ 157 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSKP---VSPEEKEKLEKEYKKW 157 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHHH
Q ss_pred HHHHHhhHhH
Q 007324 356 KKQAALSEGN 365 (608)
Q Consensus 356 dq~l~~~e~~ 365 (608)
......|...
T Consensus 158 ~k~w~kRKri 167 (169)
T PF07106_consen 158 RKEWKKRKRI 167 (169)
T ss_pred HHHHHHHHHH
No 310
>PRK04406 hypothetical protein; Provisional
Probab=21.18 E-value=3.2e+02 Score=23.63 Aligned_cols=55 Identities=18% Similarity=0.242 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHHHHHHHhhHh
Q 007324 306 SRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEG 364 (608)
Q Consensus 306 ~~S~~~r~k~lQ~ELs~ar~~v~k~EsdlteALAAKdSqLavL~vrldeadq~l~~~e~ 364 (608)
+..+.+|+.+|+.-++-- +..=++|.++++...-+|..|...+.....++.....
T Consensus 6 ~~~le~Ri~~LE~~lAfQ----E~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~~ 60 (75)
T PRK04406 6 IEQLEERINDLECQLAFQ----EQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMDS 60 (75)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
No 311
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=21.07 E-value=1.5e+03 Score=27.33 Aligned_cols=32 Identities=22% Similarity=0.220 Sum_probs=24.5
Q ss_pred HHHHHhhhHHHHHHHHhHHHHHHHhhhhhhhh
Q 007324 562 TQLETMASEKAAAEFQLEKEMNRLQEVQVCQR 593 (608)
Q Consensus 562 TqLEaLatEKaAl~fQLER~eqq~k~~q~~~~ 593 (608)
.||..+-.||++|.-.|+....++..++-+.-
T Consensus 272 qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als 303 (717)
T PF09730_consen 272 QQLLQVEREKSSLLSNLQESQKQLEHAQGALS 303 (717)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777888999998888888888876665543
No 312
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=20.94 E-value=1.5e+02 Score=31.33 Aligned_cols=43 Identities=26% Similarity=0.329 Sum_probs=32.3
Q ss_pred hhhhhhhhhhhhhhhHhHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 007324 278 CAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQEL 320 (608)
Q Consensus 278 c~~ls~rL~~lr~EN~QLEeLLr~E~~~~~S~~~r~k~lQ~EL 320 (608)
+.-...||..|+.||.+|||+++.=-..+..|..|..+|...+
T Consensus 165 ~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~ 207 (290)
T COG4026 165 YEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGV 207 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccc
Confidence 4556789999999999999999854444566777777776654
No 313
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=20.90 E-value=4e+02 Score=22.34 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 007324 546 LEKRYRELTDLLYYKQTQLETM 567 (608)
Q Consensus 546 LE~RlreLTE~LyqKQTqLEaL 567 (608)
+|.-+.+|.+.+|.=|.++..|
T Consensus 16 qe~~ie~Ln~~v~~Qq~~I~~L 37 (69)
T PF04102_consen 16 QEDTIEELNDVVTEQQRQIDRL 37 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555544
No 314
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=20.82 E-value=1.8e+03 Score=28.17 Aligned_cols=42 Identities=17% Similarity=0.130 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHH
Q 007324 544 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRL 585 (608)
Q Consensus 544 ~ELE~RlreLTE~LyqKQTqLEaLatEKaAl~fQLER~eqq~ 585 (608)
.+|-++...|-..|---+-++.+|.+.|+-+.-|+-...-+|
T Consensus 484 ~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qy 525 (1195)
T KOG4643|consen 484 EELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQY 525 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666677777777778888888888887766554444433
No 315
>PRK04325 hypothetical protein; Provisional
Probab=20.75 E-value=3.2e+02 Score=23.46 Aligned_cols=52 Identities=21% Similarity=0.296 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHHHHHHHh
Q 007324 306 SRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAAL 361 (608)
Q Consensus 306 ~~S~~~r~k~lQ~ELs~ar~~v~k~EsdlteALAAKdSqLavL~vrldeadq~l~~ 361 (608)
+.++..|+..|+.-++-- +..=++|.++++...-+|..|...+.-...++..
T Consensus 4 ~~~~e~Ri~~LE~klAfQ----E~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 4 VQEMEDRITELEIQLAFQ----EDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred chhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777666333 2233778888888888888777666665554443
No 316
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=20.73 E-value=5.6e+02 Score=23.60 Aligned_cols=70 Identities=24% Similarity=0.285 Sum_probs=50.2
Q ss_pred HHhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHH-HH-hcccchhHHHHHHHHHHHHHHHhhHhHHHHHhhhhh
Q 007324 304 ELSRSYEARIKQLEQELSVYKSEVTKVESNLAE-AL-AAKNSEIETLVSSIDALKKQAALSEGNLASLQMNME 374 (608)
Q Consensus 304 ~~~~S~~~r~k~lQ~ELs~ar~~v~k~Esdlte-AL-AAKdSqLavL~vrldeadq~l~~~e~~La~LQ~e~~ 374 (608)
.+++.+..+.+.|..||++.+...-..++ .+. .- +..-+--+.|+..|-.+.-++....+++-.||-+++
T Consensus 22 Rkl~ele~eN~~l~~EL~kyk~~~g~~d~-~~~~~~g~~~~~~~~~l~~eLk~a~~qi~~Ls~kv~eLq~ENR 93 (96)
T PF11365_consen 22 RKLSELEDENKQLTEELNKYKSKYGDLDS-LAKLSEGGSPSGREAELQEELKLAREQINELSGKVMELQYENR 93 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcc-cccCCCCCCCccccHHHHHHHHHHHHHHHHHhhHHHHHhhccc
Confidence 45888999999999999999875433332 110 00 112233467899999999999999999999987765
No 317
>PF11839 DUF3359: Protein of unknown function (DUF3359); InterPro: IPR021793 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 80 amino acids in length.
Probab=20.67 E-value=6e+02 Score=23.46 Aligned_cols=53 Identities=21% Similarity=0.159 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 007324 430 ASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKK 482 (608)
Q Consensus 430 astAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka~Ril~g 482 (608)
+......++-.++....++++...+...+....+.++|.=.+.-.|+.|.+++
T Consensus 40 a~~~a~~a~~~A~~A~~~AdeA~~kA~~A~aaA~~Aqq~A~eAnek~~RMfek 92 (96)
T PF11839_consen 40 AQATAASAQSAAASAQQRADEAASKADAALAAAEAAQQTADEANEKADRMFEK 92 (96)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333345555555555555555555556666666666666666666666544
No 318
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=20.55 E-value=33 Score=38.73 Aligned_cols=90 Identities=21% Similarity=0.226 Sum_probs=0.0
Q ss_pred HhhHHHhhhhcchhhHHHHHHHhhhhhhhhhhhhhhhHhHHHHHH---HHHHH-hHHHHHHHHHHHHHHhhhhhhhhhhh
Q 007324 256 AQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLV---AEREL-SRSYEARIKQLEQELSVYKSEVTKVE 331 (608)
Q Consensus 256 a~~ll~~~~~~g~ske~rL~rvc~~ls~rL~~lr~EN~QLEeLLr---~E~~~-~~S~~~r~k~lQ~ELs~ar~~v~k~E 331 (608)
-+.-|+.+..+...-|.||.=-=.+..+.|.+|....+.=|+=|| -|..+ |+++|.|+--.++||.+ +.
T Consensus 381 LkErL~~S~rkLeEyErrLl~QEqqt~Kll~qyq~RLedSE~RLr~QQ~eKd~qmksII~RL~~vEeELrr-----e~-- 453 (495)
T PF12004_consen 381 LKERLRMSHRKLEEYERRLLSQEQQTQKLLLQYQARLEDSEERLRRQQEEKDSQMKSIISRLMAVEEELRR-----EH-- 453 (495)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHhhhhHHHHHHHHhhhhhhhhhhhh-----hH--
Confidence 344566777778888888876666777778888766666666666 23333 99999999999999933 33
Q ss_pred hhHHHHHhcccchhHHHHHHH
Q 007324 332 SNLAEALAAKNSEIETLVSSI 352 (608)
Q Consensus 332 sdlteALAAKdSqLavL~vrl 352 (608)
.+|..+|.+|+.=|++=..++
T Consensus 454 ~~m~~~~~~kqrii~aQ~~~i 474 (495)
T PF12004_consen 454 AEMQAVLDHKQRIIDAQEKRI 474 (495)
T ss_dssp ---------------------
T ss_pred HHHhcccccchHHHHHhhhhc
Confidence 358888888877766655553
No 319
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=20.45 E-value=1.3e+03 Score=26.32 Aligned_cols=234 Identities=18% Similarity=0.251 Sum_probs=121.2
Q ss_pred chhhhHHHHhhHHH---hhhhcchhhHHHHHHHhhhhhhhhhhhhhhhHhHHHHHH----------HHHHH----h----
Q 007324 248 KEQDQLDEAQGLLK---TTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLV----------AEREL----S---- 306 (608)
Q Consensus 248 K~qdql~ea~~ll~---~~~~~g~ske~rL~rvc~~ls~rL~~lr~EN~QLEeLLr----------~E~~~----~---- 306 (608)
.+.++|+.....+. .....|.--+|+ .+...+...+..|+....++=.|+. +|+.. |
T Consensus 165 ~Le~~L~~ie~~F~~f~~lt~~GD~~~A~--eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~g 242 (560)
T PF06160_consen 165 ELEKQLENIEEEFSEFEELTENGDYLEAR--EILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEG 242 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHH--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCC
Confidence 45556665555543 334566666664 4444444444444444443333333 12221 1
Q ss_pred -----HHHHHHHHHHHHHHhhhhhhhhhhh-hhHHHHHhcccchhH--------------HHHHHHHHHHHHHHhhHhHH
Q 007324 307 -----RSYEARIKQLEQELSVYKSEVTKVE-SNLAEALAAKNSEIE--------------TLVSSIDALKKQAALSEGNL 366 (608)
Q Consensus 307 -----~S~~~r~k~lQ~ELs~ar~~v~k~E-sdlteALAAKdSqLa--------------vL~vrldeadq~l~~~e~~L 366 (608)
-.+..+++++++.|..+...+...+ +...+.+..=...|. .+...+......+.-...+.
T Consensus 243 y~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~ 322 (560)
T PF06160_consen 243 YYLEHLDIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQN 322 (560)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 1345556666666666665555443 111111211122222 22233333334445555555
Q ss_pred HHHhhhhhhhhhhhhhh--hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007324 367 ASLQMNMESIMRNRELT--ETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADER 444 (608)
Q Consensus 367 a~LQ~e~~RImqdh~~~--e~q~lqaLREeLa~AE~rL~~Eq~ah~Atr~aamERE~elE~qlAeastAL~~~QR~~~E~ 444 (608)
..|..+.+|+-+.-... +......|..+|..-+.+...=...-..-....-. +...+.+....|+.++....+=
T Consensus 323 ~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~----i~~~l~~~~~~l~~ie~~q~~~ 398 (560)
T PF06160_consen 323 KELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSE----IQEELEEIEEQLEEIEEEQEEI 398 (560)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777777766555 35555666666666666554333221111111112 3344555555666666666666
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccCCCchhH
Q 007324 445 TAKAGELEQKVAMLEVECATLQQELQDMEARLKR-GQKKSPEEA 487 (608)
Q Consensus 445 k~ra~eLeqqv~~lea~~esl~QELqDyk~ka~R-il~gs~e~A 487 (608)
+.....|...-..++..+.-+++.|..++-+..+ -|+|=|.+.
T Consensus 399 ~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGlp~~y 442 (560)
T PF06160_consen 399 NESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNLPGLPEDY 442 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHH
Confidence 6777777777777777777777777777766543 347766544
No 320
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=20.33 E-value=7.5e+02 Score=23.53 Aligned_cols=45 Identities=18% Similarity=0.170 Sum_probs=20.5
Q ss_pred HHHHHHHHhhhhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhccC
Q 007324 437 IQRIADERTAKAGELEQKVA----MLEVECATLQQELQDMEARLKRGQK 481 (608)
Q Consensus 437 ~QR~~~E~k~ra~eLeqqv~----~lea~~esl~QELqDyk~ka~Ril~ 481 (608)
+.+.+++|+.++..--..+. .++...+..++.|.+.+.++..|..
T Consensus 44 I~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii~ 92 (174)
T PRK07352 44 LGKILEERREAILQALKEAEERLRQAAQALAEAQQKLAQAQQEAERIRA 92 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555544433322222 2333334444555555555555553
No 321
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=20.30 E-value=9.5e+02 Score=24.67 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHhhccCCCchhHH
Q 007324 464 TLQQELQDMEARLKRGQKKSPEEAN 488 (608)
Q Consensus 464 sl~QELqDyk~ka~Ril~gs~e~Ag 488 (608)
..+++|.+.+.++..|+...-..|.
T Consensus 61 e~e~~l~~a~~ea~~ii~~A~~eA~ 85 (250)
T PRK14474 61 RYRQKQQSLEQQRASFMAQAQEAAD 85 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555544333333
No 322
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=20.18 E-value=6.6e+02 Score=26.10 Aligned_cols=44 Identities=11% Similarity=0.197 Sum_probs=33.6
Q ss_pred chhHHHHHHHHHHHHHHHhhHhHHHHHhhhhhhhhhhhhhhhhH
Q 007324 343 SEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR 386 (608)
Q Consensus 343 SqLavL~vrldeadq~l~~~e~~La~LQ~e~~RImqdh~~~e~q 386 (608)
.+++.....|+.++....+...+.+.++.+-+|++.+|+.=+++
T Consensus 165 ~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~ 208 (216)
T KOG1962|consen 165 TELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQ 208 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 34555666777778888888888899999999999888765443
No 323
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=20.06 E-value=2.9e+02 Score=23.81 Aligned_cols=49 Identities=27% Similarity=0.287 Sum_probs=31.5
Q ss_pred hHHHHHHHhhhhh-------hhhhhhhhhhHhHHHHHHHHHHHhHHHHHHHHHHHH
Q 007324 270 KEARLARVCAGLS-------SRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQ 318 (608)
Q Consensus 270 ke~rL~rvc~~ls-------~rL~~lr~EN~QLEeLLr~E~~~~~S~~~r~k~lQ~ 318 (608)
|.-+|.+.|.+|. .++..+..|+.+|=+-.-.-.+.+..++.|++.|.+
T Consensus 8 kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~leq 63 (65)
T TIGR02449 8 QVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALEQ 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 4556666776654 555666666665555555555568888888887754
Done!