Query 007324
Match_columns 608
No_of_seqs 34 out of 36
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 22:54:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007324.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007324hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 98.7 0.00014 4.9E-09 64.5 39.5 43 545-587 241-283 (284)
2 1c1g_A Tropomyosin; contractIl 98.3 0.0017 5.7E-08 57.7 38.0 35 342-376 68-102 (284)
3 1i84_S Smooth muscle myosin he 98.2 1.9E-06 6.6E-11 98.3 8.0 41 284-324 858-898 (1184)
4 1i84_S Smooth muscle myosin he 97.9 2.3E-05 7.7E-10 89.7 9.9 42 280-321 861-902 (1184)
5 3na7_A HP0958; flagellar bioge 94.6 3.4 0.00012 39.9 22.1 59 384-446 88-146 (256)
6 3o0z_A RHO-associated protein 94.2 2.9 9.9E-05 39.8 17.2 143 248-412 10-162 (168)
7 3vkg_A Dynein heavy chain, cyt 94.0 18 0.0006 46.9 28.2 121 458-587 1981-2102(3245)
8 3na7_A HP0958; flagellar bioge 93.9 4.9 0.00017 38.8 19.9 95 273-369 22-116 (256)
9 2dfs_A Myosin-5A; myosin-V, in 93.5 1.5 5E-05 50.9 16.5 19 564-582 1025-1043(1080)
10 2fxo_A Myosin heavy chain, car 92.8 4.8 0.00017 35.7 15.8 111 338-474 15-125 (129)
11 2v71_A Nuclear distribution pr 91.7 9.8 0.00034 36.7 19.6 138 437-599 47-184 (189)
12 2dfs_A Myosin-5A; myosin-V, in 91.2 14 0.00048 43.0 20.7 56 499-554 985-1043(1080)
13 3vkg_A Dynein heavy chain, cyt 90.9 18 0.00062 46.8 22.7 15 494-508 2087-2101(3245)
14 2fxo_A Myosin heavy chain, car 90.9 8.2 0.00028 34.2 15.4 102 487-588 9-123 (129)
15 3u59_A Tropomyosin beta chain; 88.7 10 0.00036 32.3 14.0 84 437-537 14-97 (101)
16 3u1c_A Tropomyosin alpha-1 cha 87.4 13 0.00045 31.9 14.0 84 437-537 14-97 (101)
17 3q8t_A Beclin-1; autophagy, AT 87.1 13 0.00044 31.9 12.7 74 494-567 14-93 (96)
18 3mq7_A Bone marrow stromal ant 86.8 5.5 0.00019 36.3 10.5 13 402-414 17-29 (121)
19 3oja_B Anopheles plasmodium-re 85.3 12 0.00043 38.6 13.9 74 332-406 505-578 (597)
20 3oja_B Anopheles plasmodium-re 84.0 25 0.00087 36.3 15.5 32 437-468 549-580 (597)
21 3mq9_A Bone marrow stromal ant 83.7 29 0.001 35.1 15.5 70 437-533 402-471 (471)
22 3ol1_A Vimentin; structural ge 81.8 27 0.00091 30.7 13.4 65 490-562 40-105 (119)
23 3swk_A Vimentin; cytoskeleton, 81.7 15 0.00051 30.9 10.5 58 499-557 22-79 (86)
24 3ni0_A Bone marrow stromal ant 81.3 13 0.00044 33.0 10.1 37 437-473 51-87 (99)
25 2i1j_A Moesin; FERM, coiled-co 80.5 3.7 0.00013 44.4 8.0 61 421-481 338-398 (575)
26 2zuo_A MVP, major vault protei 79.6 98 0.0033 35.9 19.1 54 517-570 748-805 (861)
27 2v4h_A NF-kappa-B essential mo 77.4 41 0.0014 30.3 12.5 77 499-586 25-107 (110)
28 3i00_A HIP-I, huntingtin-inter 74.4 25 0.00085 31.5 10.3 65 453-537 15-79 (120)
29 3ghg_A Fibrinogen alpha chain; 74.2 36 0.0012 37.5 13.2 61 494-554 113-189 (562)
30 3ajw_A Flagellar FLIJ protein; 73.0 45 0.0015 28.7 14.5 96 437-536 17-112 (150)
31 3a7p_A Autophagy protein 16; c 72.5 18 0.00062 34.0 9.2 66 309-378 66-131 (152)
32 3tnu_B Keratin, type II cytosk 72.5 34 0.0012 30.1 10.6 44 432-475 29-72 (129)
33 3o0z_A RHO-associated protein 72.3 69 0.0023 30.5 17.8 65 391-473 11-75 (168)
34 1ic2_A Tropomyosin alpha chain 71.2 41 0.0014 27.6 10.5 66 493-566 8-73 (81)
35 3mq9_A Bone marrow stromal ant 71.1 93 0.0032 31.5 15.2 26 453-478 443-468 (471)
36 3tnu_A Keratin, type I cytoske 70.3 30 0.001 30.6 9.8 45 431-475 30-74 (131)
37 2ocy_A RAB guanine nucleotide 69.7 74 0.0025 29.8 16.7 34 341-374 56-89 (154)
38 3u1c_A Tropomyosin alpha-1 cha 69.5 53 0.0018 28.1 12.2 88 278-369 4-91 (101)
39 3tnu_B Keratin, type II cytosk 66.6 24 0.00081 31.1 8.3 65 266-330 33-101 (129)
40 1l8d_A DNA double-strand break 66.3 41 0.0014 28.2 9.5 36 437-472 8-43 (112)
41 3q8t_A Beclin-1; autophagy, AT 64.4 68 0.0023 27.4 13.0 89 493-582 6-94 (96)
42 2i1j_A Moesin; FERM, coiled-co 63.9 7.2 0.00025 42.2 5.3 35 448-482 337-371 (575)
43 2b9c_A Striated-muscle alpha t 61.3 85 0.0029 28.8 11.2 11 544-554 132-142 (147)
44 2v71_A Nuclear distribution pr 61.3 1.2E+02 0.0041 29.2 19.1 19 458-476 159-177 (189)
45 3i00_A HIP-I, huntingtin-inter 59.0 35 0.0012 30.6 8.0 48 279-330 18-66 (120)
46 3m9b_A Proteasome-associated A 58.8 12 0.00041 37.5 5.5 69 518-588 23-94 (251)
47 3cvf_A Homer-3, homer protein 58.4 20 0.00067 30.5 5.9 43 274-330 4-46 (79)
48 1deq_A Fibrinogen (alpha chain 58.3 1.9E+02 0.0067 30.7 14.7 43 494-536 116-158 (390)
49 3tnu_A Keratin, type I cytoske 56.6 32 0.0011 30.4 7.4 64 267-330 36-103 (131)
50 2jee_A YIIU; FTSZ, septum, coi 55.1 46 0.0016 28.4 7.7 50 269-322 13-66 (81)
51 3tul_A Cell invasion protein S 55.0 1.4E+02 0.0049 28.2 14.5 87 332-418 48-139 (158)
52 3fpp_A Macrolide-specific effl 54.3 46 0.0016 32.0 8.6 74 449-536 79-152 (341)
53 2e7s_A RAB guanine nucleotide 54.3 30 0.001 32.0 6.9 60 306-369 41-101 (135)
54 1x79_B RAB GTPase binding effe 54.0 85 0.0029 28.2 9.6 64 309-372 11-74 (112)
55 2w83_C C-JUN-amino-terminal ki 49.7 97 0.0033 26.4 8.7 40 278-318 4-44 (77)
56 2w6a_A ARF GTPase-activating p 49.5 22 0.00075 29.2 4.6 40 244-288 7-46 (63)
57 3u59_A Tropomyosin beta chain; 49.1 1.2E+02 0.0042 25.6 12.4 25 345-369 67-91 (101)
58 1wt6_A Myotonin-protein kinase 47.9 53 0.0018 28.2 6.9 43 494-536 27-69 (81)
59 2eqb_B RAB guanine nucleotide 47.9 1.4E+02 0.005 26.2 10.4 44 544-587 50-94 (97)
60 3jsv_C NF-kappa-B essential mo 47.8 79 0.0027 27.7 8.2 77 500-591 4-90 (94)
61 2ocy_A RAB guanine nucleotide 46.6 1.9E+02 0.0065 27.1 17.3 39 437-475 106-144 (154)
62 3hnw_A Uncharacterized protein 45.4 1.6E+02 0.0056 26.6 10.3 28 502-529 107-134 (138)
63 1go4_E MAD1 (mitotic arrest de 43.1 98 0.0034 27.3 8.1 32 447-478 13-44 (100)
64 2f1m_A Acriflavine resistance 43.0 97 0.0033 28.9 8.7 18 519-536 112-129 (277)
65 3a7p_A Autophagy protein 16; c 42.0 67 0.0023 30.2 7.3 51 543-593 77-127 (152)
66 3k29_A Putative uncharacterize 41.0 2.5E+02 0.0085 26.9 13.1 53 486-538 69-125 (169)
67 2jee_A YIIU; FTSZ, septum, coi 40.4 1.2E+02 0.0042 25.9 8.0 52 421-472 9-60 (81)
68 4dk0_A Putative MACA; alpha-ha 40.1 94 0.0032 30.1 8.4 40 496-535 68-107 (369)
69 4dk0_A Putative MACA; alpha-ha 40.1 94 0.0032 30.1 8.4 23 308-330 81-103 (369)
70 3fpp_A Macrolide-specific effl 39.7 1.1E+02 0.0037 29.4 8.6 39 497-535 68-106 (341)
71 2e7s_A RAB guanine nucleotide 38.5 62 0.0021 29.9 6.4 28 540-567 95-122 (135)
72 2eqb_B RAB guanine nucleotide 38.4 2.1E+02 0.007 25.2 11.9 67 496-562 24-97 (97)
73 3m9b_A Proteasome-associated A 38.2 34 0.0012 34.3 5.0 39 494-532 57-95 (251)
74 1dh3_A Transcription factor CR 38.1 67 0.0023 25.0 5.7 38 437-474 13-50 (55)
75 1ic2_A Tropomyosin alpha chain 36.7 1.3E+02 0.0045 24.6 7.5 8 313-320 8-15 (81)
76 3trt_A Vimentin; cytoskeleton, 36.7 1.3E+02 0.0044 24.0 7.3 24 509-532 53-76 (77)
77 3cve_A Homer protein homolog 1 35.2 92 0.0032 26.0 6.3 37 280-330 4-40 (72)
78 2b9c_A Striated-muscle alpha t 34.3 2.7E+02 0.0093 25.4 13.1 44 421-464 55-98 (147)
79 1oxz_A ADP-ribosylation factor 33.9 1.4E+02 0.0046 28.6 8.2 100 251-355 48-157 (186)
80 3s4r_A Vimentin; alpha-helix, 32.6 2.3E+02 0.0079 24.0 10.8 68 447-533 24-91 (93)
81 3mq7_A Bone marrow stromal ant 31.3 1.2E+02 0.0042 27.6 7.0 39 333-371 57-99 (121)
82 2zqm_A Prefoldin beta subunit 31.1 2.3E+02 0.0078 23.5 9.4 49 331-379 65-113 (117)
83 2efr_A General control protein 30.8 3.3E+02 0.011 25.3 23.4 63 494-556 73-138 (155)
84 1gd2_E Transcription factor PA 30.1 88 0.003 25.7 5.4 30 437-466 19-49 (70)
85 3cve_A Homer protein homolog 1 29.6 2.2E+02 0.0077 23.7 7.8 45 515-560 10-54 (72)
86 3ra3_A P1C; coiled coil domain 28.5 36 0.0012 23.9 2.4 20 448-467 9-28 (28)
87 2p22_C Protein SRN2; endosome, 28.4 3.9E+02 0.013 25.4 10.4 100 292-405 40-143 (192)
88 1naf_A ADP-ribosylation factor 27.8 1.1E+02 0.0039 28.4 6.4 100 251-355 32-141 (158)
89 3ghg_A Fibrinogen alpha chain; 27.8 6.1E+02 0.021 28.2 12.8 101 349-477 52-155 (562)
90 2no2_A HIP-I, huntingtin-inter 27.5 3.1E+02 0.011 23.9 12.0 42 337-378 62-103 (107)
91 1grj_A GREA protein; transcrip 27.3 88 0.003 28.4 5.5 19 539-557 51-69 (158)
92 3hnw_A Uncharacterized protein 27.1 3.5E+02 0.012 24.4 11.5 43 492-534 69-111 (138)
93 4e61_A Protein BIM1; EB1-like 26.8 1.8E+02 0.0061 25.9 7.1 46 434-479 6-51 (106)
94 4fm3_A Uncharacterized hypothe 26.6 3.1E+02 0.011 24.1 8.5 63 388-454 31-93 (98)
95 3iyk_A VP5; icosahedral virus; 26.0 7E+02 0.024 27.5 16.4 67 342-408 145-211 (526)
96 1wle_A Seryl-tRNA synthetase; 24.9 2.6E+02 0.0091 30.0 9.4 34 344-377 117-150 (501)
97 3nmd_A CGMP dependent protein 24.6 2.6E+02 0.0091 23.4 7.3 51 485-538 16-66 (72)
98 3efg_A Protein SLYX homolog; x 24.0 1.8E+02 0.0061 24.2 6.2 41 545-585 11-51 (78)
99 2p4v_A Transcription elongatio 24.0 1E+02 0.0035 28.1 5.2 19 539-557 51-69 (158)
100 3m91_A Proteasome-associated A 23.7 2.6E+02 0.009 21.9 6.8 36 495-530 13-48 (51)
101 2v66_B Nuclear distribution pr 23.5 3.9E+02 0.013 23.8 16.0 105 446-575 3-107 (111)
102 1wlq_A Geminin; coiled-coil; 2 22.3 1.1E+02 0.0037 26.4 4.6 40 273-313 42-81 (83)
103 1fxk_A Prefoldin; archaeal pro 22.0 3.2E+02 0.011 22.3 9.1 46 331-376 60-105 (107)
104 1m1j_C Fibrinogen gamma chain; 21.7 7.2E+02 0.025 26.2 12.8 83 432-517 27-110 (409)
105 2dgc_A Protein (GCN4); basic d 21.7 2.2E+02 0.0077 22.6 6.2 38 437-474 21-58 (63)
106 3cvf_A Homer-3, homer protein 20.7 3.3E+02 0.011 23.0 7.3 42 494-535 16-57 (79)
107 1gu4_A CAAT/enhancer binding p 20.7 2.8E+02 0.0096 23.1 6.8 38 437-474 27-64 (78)
108 1o3x_A ADP-ribosylation factor 20.7 1.7E+02 0.0058 26.6 6.0 99 251-354 23-131 (140)
109 2zqm_A Prefoldin beta subunit 20.5 1.6E+02 0.0053 24.5 5.3 39 446-484 77-115 (117)
110 2efr_A General control protein 20.2 5.3E+02 0.018 24.0 19.0 49 416-464 68-116 (155)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.70 E-value=0.00014 Score=64.53 Aligned_cols=43 Identities=14% Similarity=0.118 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHhh
Q 007324 545 ELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQE 587 (608)
Q Consensus 545 ELE~RlreLTE~LyqKQTqLEaLatEKaAl~fQLER~eqq~k~ 587 (608)
.++..+..+..-+...+..+..+-...+.+..+++....+|.+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 283 (284)
T 1c1g_A 241 FAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTS 283 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444444444444444455555555666666666666655543
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.30 E-value=0.0017 Score=57.69 Aligned_cols=35 Identities=6% Similarity=0.096 Sum_probs=15.3
Q ss_pred cchhHHHHHHHHHHHHHHHhhHhHHHHHhhhhhhh
Q 007324 342 NSEIETLVSSIDALKKQAALSEGNLASLQMNMESI 376 (608)
Q Consensus 342 dSqLavL~vrldeadq~l~~~e~~La~LQ~e~~RI 376 (608)
..++..+...+......+......+..+..+..++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (284)
T 1c1g_A 68 QEKLELAEKKATDAEADVASLNRRIQLFEEELDRA 102 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444433
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.19 E-value=1.9e-06 Score=98.31 Aligned_cols=41 Identities=17% Similarity=0.146 Sum_probs=16.7
Q ss_pred hhhhhhhhhHhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 007324 284 RLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYK 324 (608)
Q Consensus 284 rL~~lr~EN~QLEeLLr~E~~~~~S~~~r~k~lQ~ELs~ar 324 (608)
++.+++.+...|++-|......+..+..++..|+.+++.++
T Consensus 858 El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~ 898 (1184)
T 1i84_S 858 EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQ 898 (1184)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444443333333222233344444444444444443
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.92 E-value=2.3e-05 Score=89.70 Aligned_cols=42 Identities=17% Similarity=0.135 Sum_probs=15.8
Q ss_pred hhhhhhhhhhhhhHhHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 007324 280 GLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELS 321 (608)
Q Consensus 280 ~ls~rL~~lr~EN~QLEeLLr~E~~~~~S~~~r~k~lQ~ELs 321 (608)
.+..+|..++.....+++.+..-...+..+...+..++.+|.
T Consensus 861 ~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~ 902 (1184)
T 1i84_S 861 AKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQ 902 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444443333333333222223344444444444443
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=94.65 E-value=3.4 Score=39.88 Aligned_cols=59 Identities=12% Similarity=0.136 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007324 384 ETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTA 446 (608)
Q Consensus 384 e~q~lqaLREeLa~AE~rL~~Eq~ah~Atr~aamERE~elE~qlAeastAL~~~QR~~~E~k~ 446 (608)
-++-+++|..++..++.+.. ...---+..|++-..++..+.+....+..++..+.+.+.
T Consensus 88 ~~kE~~aL~kEie~~~~~i~----~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~ 146 (256)
T 3na7_A 88 SERELRSLNIEEDIAKERSN----QANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELES 146 (256)
T ss_dssp SSSHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777776664432 112222334444444555555555555555555544443
No 6
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=94.24 E-value=2.9 Score=39.77 Aligned_cols=143 Identities=21% Similarity=0.260 Sum_probs=73.5
Q ss_pred chhhhHHHHhhHHHhhhhcchhhHHHHHHHhhhhhhhhhhhhhhhHhHHHHHHH-------HHHHhHHHHHHHHHHHHHH
Q 007324 248 KEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVA-------ERELSRSYEARIKQLEQEL 320 (608)
Q Consensus 248 K~qdql~ea~~ll~~~~~~g~ske~rL~rvc~~ls~rL~~lr~EN~QLEeLLr~-------E~~~~~S~~~r~k~lQ~EL 320 (608)
.++-||+|++..|++-.- .++-+++--.++..-.+++|..++- --....+|.+.+..||..|
T Consensus 10 ~LekQL~E~n~kLk~EsE-----------~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L 78 (168)
T 3o0z_A 10 QLQKQLEEANDLLRTESD-----------TAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAIL 78 (168)
T ss_dssp CTHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999997543 3344444445555555555554443 2233444555555555555
Q ss_pred hhhhhhhhhhh---hhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHH
Q 007324 321 SVYKSEVTKVE---SNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELAS 397 (608)
Q Consensus 321 s~ar~~v~k~E---sdlteALAAKdSqLavL~vrldeadq~l~~~e~~La~LQ~e~~RImqdh~~~e~q~lqaLREeLa~ 397 (608)
..=|....... .+|..=+.+-..+|.-++.++..+.-......+.+..|+.++..+ .|+ |-=+|-.
T Consensus 79 ~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~----------eid-~~~eLKa 147 (168)
T 3o0z_A 79 EAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNL----------EID-LNYKLKS 147 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------hHH-HHHHHHH
Confidence 44333222221 233333333344444444444444444444444444444433333 222 2235777
Q ss_pred HHHHHHHHHHHhHHH
Q 007324 398 VERRAEEERAAHNAT 412 (608)
Q Consensus 398 AE~rL~~Eq~ah~At 412 (608)
+-.++..|-.+|.+|
T Consensus 148 lQ~~~eqE~~~H~~T 162 (168)
T 3o0z_A 148 LQQRLEQEVNEHKVT 162 (168)
T ss_dssp HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHH
Confidence 778888888888777
No 7
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=93.96 E-value=18 Score=46.91 Aligned_cols=121 Identities=16% Similarity=0.212 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCC-CchhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 007324 458 LEVECATLQQELQDMEARLKRGQKK-SPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAE 536 (608)
Q Consensus 458 lea~~esl~QELqDyk~ka~Ril~g-s~e~Agqv~qle~~reev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd~~ 536 (608)
.+..++.-..+.+..+..+..-|.. -|. +=.|+++..++.....+++.+.+.++++..++..++.++.+++
T Consensus 1981 ~~~~~~~~~~ei~~~k~~~e~dL~~A~Pa--------~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~ 2052 (3245)
T 3vkg_A 1981 LQVQLDVRNKEIAVQKVKAYADLEKAEPT--------GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYA 2052 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC---------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCC--------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444455555555555532 111 3356677777777777777777778888888888888888877
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHhh
Q 007324 537 HYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQE 587 (608)
Q Consensus 537 ~~Sr~s~~ELE~RlreLTE~LyqKQTqLEaLatEKaAl~fQLER~eqq~k~ 587 (608)
.. -.+...|+.........|-.=...+..|+.||.-=.-+.+.+..++..
T Consensus 2053 ~~-~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~ 2102 (3245)
T 3vkg_A 2053 TL-IRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMST 2102 (3245)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHh
Confidence 42 234677888888888888888889999999998777777777666654
No 8
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=93.90 E-value=4.9 Score=38.79 Aligned_cols=95 Identities=13% Similarity=0.205 Sum_probs=53.1
Q ss_pred HHHHHhhhhhhhhhhhhhhhHhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHH
Q 007324 273 RLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSI 352 (608)
Q Consensus 273 rL~rvc~~ls~rL~~lr~EN~QLEeLLr~E~~~~~S~~~r~k~lQ~ELs~ar~~v~k~EsdlteALAAKdSqLavL~vrl 352 (608)
+|......+-.+|..+..+...|..-+..-...+..+...++.+..++...+.++.+++.-|.. ...+-++..|...+
T Consensus 22 ~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~--v~~~kE~~aL~kEi 99 (256)
T 3na7_A 22 SLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSE--IKSERELRSLNIEE 99 (256)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CSSSSHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCHHHHHHHHHHH
Confidence 3333333444444444444444444444444446666666667777777777777777666643 22446666666666
Q ss_pred HHHHHHHHhhHhHHHHH
Q 007324 353 DALKKQAALSEGNLASL 369 (608)
Q Consensus 353 deadq~l~~~e~~La~L 369 (608)
+.+.......+..+-++
T Consensus 100 e~~~~~i~~lE~eile~ 116 (256)
T 3na7_A 100 DIAKERSNQANREIENL 116 (256)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666555555555
No 9
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=93.49 E-value=1.5 Score=50.91 Aligned_cols=19 Identities=5% Similarity=0.066 Sum_probs=7.3
Q ss_pred HHHhhhHHHHHHHHhHHHH
Q 007324 564 LETMASEKAAAEFQLEKEM 582 (608)
Q Consensus 564 LEaLatEKaAl~fQLER~e 582 (608)
+..|..|++-|.-|++.++
T Consensus 1025 v~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1025 VSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333334443333333333
No 10
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=92.85 E-value=4.8 Score=35.66 Aligned_cols=111 Identities=23% Similarity=0.387 Sum_probs=74.1
Q ss_pred HhcccchhHHHHHHHHHHHHHHHhhHhHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 007324 338 LAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAM 417 (608)
Q Consensus 338 LAAKdSqLavL~vrldeadq~l~~~e~~La~LQ~e~~RImqdh~~~e~q~lqaLREeLa~AE~rL~~Eq~ah~Atr~aam 417 (608)
+.+++.+|..|+..|........-.+.....|-.++..|. ..|++=++-|++||-+..+- .
T Consensus 15 ~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~--------~qL~~E~~~l~e~EE~~~~L-----------~ 75 (129)
T 2fxo_A 15 MASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQ--------LQVQAEQDNLADAEERCDQL-----------I 75 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH-----------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhHHHHHHHH-----------H
Confidence 4456666777777666555554444444444444444433 22666677777777766433 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007324 418 EREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEA 474 (608)
Q Consensus 418 ERE~elE~qlAeastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ 474 (608)
.+..+||..+.++ +..+++...+..+|...-+.++..|..|+..|.|++.
T Consensus 76 ~~k~eLe~~l~el-------~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e~ 125 (129)
T 2fxo_A 76 KNKIQLEAKVKEM-------NKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLEL 125 (129)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445577777664 5667888888999999999999999999999998764
No 11
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=91.73 E-value=9.8 Score=36.65 Aligned_cols=138 Identities=12% Similarity=0.194 Sum_probs=69.6
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHH
Q 007324 437 IQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSS 516 (608)
Q Consensus 437 ~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka~Ril~gs~e~Agqv~qle~~reev~~areq~~~~e~a~qe 516 (608)
++..+..-.++..+|+.++..++.++++++-.+..-..- + ..++..++.++..++.........+..
T Consensus 47 LE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e-----------~--~~~~~~Lq~el~~l~~~~~~l~~~ire 113 (189)
T 2v71_A 47 LEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQ-----------S--YKQVSVLEDDLSQTRAIKEQLHKYVRE 113 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------H--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------H--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455666666666666666666665444332211 1 124455666666666555554444443
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHhhhhhhhhhhc
Q 007324 517 LEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQVCQRVLH 596 (608)
Q Consensus 517 ~~ae~q~~e~El~~~Kqd~~~~Sr~s~~ELE~RlreLTE~LyqKQTqLEaLatEKaAl~fQLER~eqq~k~~q~~~~~~~ 596 (608)
+ |+--.-+-+..+. ...+-.++|.+|..+-|-...=++-|+ ||-.|...+.|+..-+++...|..|+.
T Consensus 114 L-------Eq~NDdlEr~~R~-~~~SleD~e~kln~aiEr~alLE~El~----EKe~l~~~~QRLkdE~rDLk~El~v~~ 181 (189)
T 2v71_A 114 L-------EQANDDLERAKRA-TIMSLEDFEQRLNQAIERNAFLESELD----EKESLLVSVQRLKDEARDLRQELAVRE 181 (189)
T ss_dssp H-------HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHCCC------------------
T ss_pred H-------HHHhhHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 4443334444443 344578999999998887766666665 899999999999999999999999998
Q ss_pred cCC
Q 007324 597 STP 599 (608)
Q Consensus 597 ~~~ 599 (608)
-+|
T Consensus 182 ~~~ 184 (189)
T 2v71_A 182 RQQ 184 (189)
T ss_dssp ---
T ss_pred ccc
Confidence 776
No 12
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=91.22 E-value=14 Score=42.96 Aligned_cols=56 Identities=16% Similarity=0.195 Sum_probs=25.2
Q ss_pred HHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh---hhhhHHHHHHHHHHHH
Q 007324 499 EVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHY---SREEHMELEKRYRELT 554 (608)
Q Consensus 499 ev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd~~~~---Sr~s~~ELE~RlreLT 554 (608)
.+..+.+.+...+..++.+..+...++.....++.+++.- -.+.-..|+.++.+|.
T Consensus 985 ~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 985 RVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444411 1223355666666665
No 13
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=90.91 E-value=18 Score=46.80 Aligned_cols=15 Identities=13% Similarity=0.348 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHhHH
Q 007324 494 QAWQDEVERARQGQR 508 (608)
Q Consensus 494 e~~reev~~areq~~ 508 (608)
.-|.+.+..+..+..
T Consensus 2087 ~RW~~~~~~l~~~~~ 2101 (3245)
T 3vkg_A 2087 GRWEQQSENFNTQMS 2101 (3245)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 347666666665543
No 14
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=90.85 E-value=8.2 Score=34.17 Aligned_cols=102 Identities=14% Similarity=0.233 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh-----------h--hhhHHHHHHHHHHH
Q 007324 487 ANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHY-----------S--REEHMELEKRYREL 553 (608)
Q Consensus 487 Agqv~qle~~reev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd~~~~-----------S--r~s~~ELE~RlreL 553 (608)
+.+.-+|..+.+++..+++.+...+..+.+++.....+..|...+...+... . ...-.+||..|+++
T Consensus 9 ~~~e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el 88 (129)
T 2fxo_A 9 AEREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEM 88 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445577788888888888888888888888888888888877776666522 1 12457999999999
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHhhh
Q 007324 554 TDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEV 588 (608)
Q Consensus 554 TE~LyqKQTqLEaLatEKaAl~fQLER~eqq~k~~ 588 (608)
.+-|-.---+...|..+|--++-.+.-+.+++.+.
T Consensus 89 ~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 89 NKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888888764
No 15
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=88.70 E-value=10 Score=32.26 Aligned_cols=84 Identities=23% Similarity=0.372 Sum_probs=63.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHH
Q 007324 437 IQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSS 516 (608)
Q Consensus 437 ~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka~Ril~gs~e~Agqv~qle~~reev~~areq~~~~e~a~qe 516 (608)
+.--.+....|+..++.+++.++..+..+-+++..+.-|. +.++.+++.+......+...+..
T Consensus 14 lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKi-----------------q~lE~eld~~~e~l~~a~~kLe~ 76 (101)
T 3u59_A 14 LKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKL-----------------KGTEDEVEKYSESVKEAQEKLEQ 76 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566667777778888877777777777777655543 34566788888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 007324 517 LEAEVQKMRVEMAAMKRDAEH 537 (608)
Q Consensus 517 ~~ae~q~~e~El~~~Kqd~~~ 537 (608)
....+..++.|+++|.+-+++
T Consensus 77 ~ek~~~~AE~evasLnRriql 97 (101)
T 3u59_A 77 AEKKATDAEAEVASLNRRIQL 97 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888889999999887764
No 16
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=87.40 E-value=13 Score=31.90 Aligned_cols=84 Identities=17% Similarity=0.244 Sum_probs=59.5
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHH
Q 007324 437 IQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSS 516 (608)
Q Consensus 437 ~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka~Ril~gs~e~Agqv~qle~~reev~~areq~~~~e~a~qe 516 (608)
+.--.+....|+..++.+++.++..+..+-+|+..+..|. +.+..+++.+......+...+.+
T Consensus 14 lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~-----------------~~lE~eld~~ee~L~ea~~kLee 76 (101)
T 3u1c_A 14 LKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQL-----------------RVTEDSRDQVLEELHKSEDSLLF 76 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455556666667676666666666666666554443 34566788888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 007324 517 LEAEVQKMRVEMAAMKRDAEH 537 (608)
Q Consensus 517 ~~ae~q~~e~El~~~Kqd~~~ 537 (608)
.......++.+++.|.+-+++
T Consensus 77 ~ek~~~~aE~ev~~L~Rriql 97 (101)
T 3u1c_A 77 AEENAAKAESEVASLNRRIQL 97 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888899999999887764
No 17
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=87.13 E-value=13 Score=31.91 Aligned_cols=74 Identities=20% Similarity=0.408 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhh------hhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007324 494 QAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYS------REEHMELEKRYRELTDLLYYKQTQLETM 567 (608)
Q Consensus 494 e~~reev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd~~~~S------r~s~~ELE~RlreLTE~LyqKQTqLEaL 567 (608)
..+..+-..+-+.+...+.....+..++.+++.|.+++.++=..|- ...+.++++.+..|---+.+=|++|+.|
T Consensus 14 ~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL 93 (96)
T 3q8t_A 14 KELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKL 93 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344444444444444444455555555555555544433221 1135677777777766667777777665
No 18
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=86.75 E-value=5.5 Score=36.27 Aligned_cols=13 Identities=23% Similarity=0.217 Sum_probs=8.8
Q ss_pred HHHHHHHhHHHHH
Q 007324 402 AEEERAAHNATKM 414 (608)
Q Consensus 402 L~~Eq~ah~Atr~ 414 (608)
|..++++++.+++
T Consensus 17 LrAq~ECrN~T~l 29 (121)
T 3mq7_A 17 LRAVMEARNVTHL 29 (121)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHH
Confidence 4567777777765
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=85.32 E-value=12 Score=38.60 Aligned_cols=74 Identities=11% Similarity=0.108 Sum_probs=41.5
Q ss_pred hhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 007324 332 SNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEER 406 (608)
Q Consensus 332 sdlteALAAKdSqLavL~vrldeadq~l~~~e~~La~LQ~e~~RImqdh~~~e~q~lqaLREeLa~AE~rL~~Eq 406 (608)
..+.+.+..-....+.+...++...+........++.++.++.+|- .+.+.....+..|+.++......++.-.
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le-~~~~~~~~~~~~l~~e~~~~~~~~~~l~ 578 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALE-KQLDNKRAKQAELRQETSLKRQKVKQLE 578 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHH-HHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4455555544555556666666666666666666666666655543 2333445555666666666655554433
No 20
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=84.03 E-value=25 Score=36.33 Aligned_cols=32 Identities=22% Similarity=0.399 Sum_probs=17.7
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 007324 437 IQRIADERTAKAGELEQKVAMLEVECATLQQE 468 (608)
Q Consensus 437 ~QR~~~E~k~ra~eLeqqv~~lea~~esl~QE 468 (608)
+++..++.+.+..++.++...++.++..+.+.
T Consensus 549 le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 549 LEKQLDNKRAKQAELRQETSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666665555554444444433
No 21
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=83.69 E-value=29 Score=35.13 Aligned_cols=70 Identities=17% Similarity=0.284 Sum_probs=46.7
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHH
Q 007324 437 IQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSS 516 (608)
Q Consensus 437 ~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka~Ril~gs~e~Agqv~qle~~reev~~areq~~~~e~a~qe 516 (608)
+||++++-.+...+++-|+...-..+-+|+--|. .++...+..+.+++..+..
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~ 454 (471)
T 3mq9_A 402 LQQELTEAQKGFQDVEAQAATANHTVMALMASLD---------------------------AEKAQGQKKVEELEGEITT 454 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHHH
Confidence 8888888888877777777766666555543332 2222222355567777777
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007324 517 LEAEVQKMRVEMAAMKR 533 (608)
Q Consensus 517 ~~ae~q~~e~El~~~Kq 533 (608)
+.++++.+++|++++|+
T Consensus 455 ~~~~~~~~~~~~~~~~~ 471 (471)
T 3mq9_A 455 LNHKLQDASAEVERLRR 471 (471)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 88888888888888773
No 22
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=81.76 E-value=27 Score=30.75 Aligned_cols=65 Identities=11% Similarity=0.342 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH-HHHHHHH
Q 007324 490 AIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTD-LLYYKQT 562 (608)
Q Consensus 490 v~qle~~reev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd~~~~Sr~s~~ELE~RlreLTE-~LyqKQT 562 (608)
.+++..++..+++++..... .-..++.++.++..+|.+++. -....++||+++..|+| +.|+|+.
T Consensus 40 ~leldn~~~~~edfk~KyE~-------E~~~r~~~E~di~~lrK~lD~-~~l~r~dLE~~iesL~eEl~FLKk~ 105 (119)
T 3ol1_A 40 EVERDNLAEDIMRLREKLQE-------EMLQREEAENTLQSFRQDVDN-ASLARLDLERKVESLQEEIAFLKKL 105 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHH-------HHHHHHHHHHHHHHhhhcccH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555544433 334566679999999999984 23346899999999987 4555554
No 23
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=81.69 E-value=15 Score=30.94 Aligned_cols=58 Identities=12% Similarity=0.236 Sum_probs=42.5
Q ss_pred HHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 007324 499 EVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLL 557 (608)
Q Consensus 499 ev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd~~~~Sr~s~~ELE~RlreLTE~L 557 (608)
+++.++........+....-..|+.+|.++..+|.+++.. ...-++||.++..|+|=|
T Consensus 22 e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a-~l~r~dLE~kvesL~eEl 79 (86)
T 3swk_A 22 ERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNA-SLARLDLERKVESLQEEI 79 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHH
Confidence 4444555555555566666677788899999999999952 334689999999998755
No 24
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=81.29 E-value=13 Score=32.96 Aligned_cols=37 Identities=27% Similarity=0.441 Sum_probs=28.4
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007324 437 IQRIADERTAKAGELEQKVAMLEVECATLQQELQDME 473 (608)
Q Consensus 437 ~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk 473 (608)
+.-+++.++...-+-+-+++-++-++..|+|.|+|.-
T Consensus 51 L~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 51 LQESLEKKVSQALEQQARIKELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666766655556678889999999999999864
No 25
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=80.50 E-value=3.7 Score=44.36 Aligned_cols=61 Identities=20% Similarity=0.219 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 007324 421 VELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQK 481 (608)
Q Consensus 421 ~elE~qlAeastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka~Ril~ 481 (608)
.+||.++...-..+.+++..+.+...++..|+++.+.++.+.+.|.++-...+.--+|+..
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~ 398 (575)
T 2i1j_A 338 QEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEE 398 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666666667777788888888888888888888888887777777776666666553
No 26
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=79.57 E-value=98 Score=35.87 Aligned_cols=54 Identities=19% Similarity=0.223 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHH--HHHHHhhhhhhhHHHHHH-HHHHHHHHHHHH-HHHHHHhhhH
Q 007324 517 LEAEVQKMRVEMAA--MKRDAEHYSREEHMELEK-RYRELTDLLYYK-QTQLETMASE 570 (608)
Q Consensus 517 ~~ae~q~~e~El~~--~Kqd~~~~Sr~s~~ELE~-RlreLTE~LyqK-QTqLEaLatE 570 (608)
.+|..=..++|+++ .++++++-....+.+||- .-++|+|.=..| ..|+++++.|
T Consensus 748 a~a~~i~~~ael~~~~~~~~~el~~~~~~~ele~~k~~~la~ie~~kf~~~v~aig~~ 805 (861)
T 2zuo_A 748 AQALAIETEAELERVKKVREMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPG 805 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred hHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhChH
Confidence 33444444556663 444444333444566663 234555544444 2344444443
No 27
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=77.36 E-value=41 Score=30.28 Aligned_cols=77 Identities=23% Similarity=0.239 Sum_probs=47.9
Q ss_pred HHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH------HHHHHhhhHHH
Q 007324 499 EVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQ------TQLETMASEKA 572 (608)
Q Consensus 499 ev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd~~~~Sr~s~~ELE~RlreLTE~LyqKQ------TqLEaLatEKa 572 (608)
+++.+..+...++.++.....++..|+.|+++++.+++..+ =|+.+. .|||. +-=|++..||-
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~-----vLkaQv------~IY~~DF~aERadREkl~~eKe 93 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVP-----VLKAQA------DIYKADFQAERHAREKLVEKKE 93 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH-----HHHHHH------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH------HHHHHHHccchhhHHHHHhHHH
Confidence 56777777777777777777777777777777776665211 111111 12221 22366777777
Q ss_pred HHHHHhHHHHHHHh
Q 007324 573 AAEFQLEKEMNRLQ 586 (608)
Q Consensus 573 Al~fQLER~eqq~k 586 (608)
-|.-||+.+..++.
T Consensus 94 ~L~~ql~~Lq~q~~ 107 (110)
T 2v4h_A 94 YLQEQLEQLQREFN 107 (110)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 78888887777654
No 28
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=74.38 E-value=25 Score=31.54 Aligned_cols=65 Identities=15% Similarity=0.197 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 007324 453 QKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMK 532 (608)
Q Consensus 453 qqv~~lea~~esl~QELqDyk~ka~Ril~gs~e~Agqv~qle~~reev~~areq~~~~e~a~qe~~ae~q~~e~El~~~K 532 (608)
..+..|+.+++.|+.+|.-++..++|+ +..++.++..+++.+.+-+++++.+.+|.+.++
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~~E~q~~--------------------v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr 74 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMKTESQRV--------------------VLQLKGHVSELEADLAEQQHLRQQAADDCEFLR 74 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344557777777777777777777664 666777778888888888888888888888888
Q ss_pred HHHhh
Q 007324 533 RDAEH 537 (608)
Q Consensus 533 qd~~~ 537 (608)
.+++.
T Consensus 75 ~e~~~ 79 (120)
T 3i00_A 75 AELDE 79 (120)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77774
No 29
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=74.16 E-value=36 Score=37.54 Aligned_cols=61 Identities=11% Similarity=0.228 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh---hh-------------hhhhHHHHHHHHHHHH
Q 007324 494 QAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAE---HY-------------SREEHMELEKRYRELT 554 (608)
Q Consensus 494 e~~reev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd~~---~~-------------Sr~s~~ELE~RlreLT 554 (608)
+.+|..++.+++.+-.+...++.|+.-+.+++++|-+|--|++ .| -..+-..++++|-||.
T Consensus 113 ~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQLeQv~ 189 (562)
T 3ghg_A 113 EDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQVI 189 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHHHHHh
Confidence 3577777777777777777777777777777777777777766 22 1235577888888774
No 30
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=73.05 E-value=45 Score=28.67 Aligned_cols=96 Identities=10% Similarity=0.102 Sum_probs=49.2
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHH
Q 007324 437 IQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSS 516 (608)
Q Consensus 437 ~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka~Ril~gs~e~Agqv~qle~~reev~~areq~~~~e~a~qe 516 (608)
.++..++.........+.+...+..+..|.+...+|....... .++|-. +..+..++.=+..+...|..+...+..
T Consensus 17 ~~~~ed~a~~~l~~a~~~~~~~~~~L~~L~~~~~~y~~~~~~~-~~~g~~---~~~l~~~~~fi~~L~~~I~~q~~~l~~ 92 (150)
T 3ajw_A 17 AEKEVDDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRSNLNTD-MGNGIA---SNRWINYQQFIQTLEKAIEQHRLQLTQ 92 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---CCSGGG---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444455555555555555555555555555322211 122223 334444555566666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 007324 517 LEAEVQKMRVEMAAMKRDAE 536 (608)
Q Consensus 517 ~~ae~q~~e~El~~~Kqd~~ 536 (608)
.+.+++.++..+-...++..
T Consensus 93 ~~~~~e~~r~~l~~a~~~~k 112 (150)
T 3ajw_A 93 WTQKVDLALKSWREKKQRLQ 112 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666666665544444443
No 31
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=72.51 E-value=18 Score=34.01 Aligned_cols=66 Identities=20% Similarity=0.268 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHhhhhhhhhh
Q 007324 309 YEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMR 378 (608)
Q Consensus 309 ~~~r~k~lQ~ELs~ar~~v~k~EsdlteALAAKdSqLavL~vrldeadq~l~~~e~~La~LQ~e~~RImq 378 (608)
..+.+..|+.++...+.++ .++.+.|..|+.-++.|...|.+..-++...+.++..|+.|+..|+.
T Consensus 66 ~~~~I~~L~~El~~l~~ki----~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~ 131 (152)
T 3a7p_A 66 LLNTLAILQKELKSKEQEI----RRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVA 131 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666666665554444 46677788899999999999999999999999999999999865543
No 32
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=72.45 E-value=34 Score=30.08 Aligned_cols=44 Identities=23% Similarity=0.330 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007324 432 MALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEAR 475 (608)
Q Consensus 432 tAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~k 475 (608)
.+|..+.--+.+-++.+..|+-++..++..+++|...|.|++.+
T Consensus 29 ~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~ 72 (129)
T 3tnu_B 29 DDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQR 72 (129)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33333444455555666666666666666666666666666654
No 33
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=72.30 E-value=69 Score=30.51 Aligned_cols=65 Identities=15% Similarity=0.242 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 007324 391 LREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQ 470 (608)
Q Consensus 391 LREeLa~AE~rL~~Eq~ah~Atr~aamERE~elE~qlAeastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELq 470 (608)
|.-.|.++-..|+.|-++ ++|+-+.. +|+..+ +...-..+.||+.++..|......|.+++.
T Consensus 11 LekQL~E~n~kLk~EsE~--~~rlkK~~---------tEl~k~-------~~~~E~~~rELq~~~~~L~~~k~~Leke~~ 72 (168)
T 3o0z_A 11 LQKQLEEANDLLRTESDT--AVRLRKSH---------TEMSKS-------ISQLESLNRELQERNRILENSKSQTDKDYY 72 (168)
T ss_dssp THHHHHHHHHHHHHHHHH--HHHHHHHH---------HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHH--HHHHHHHH---------HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777766654 56666665 233323 222334567777777888888888877776
Q ss_pred HHH
Q 007324 471 DME 473 (608)
Q Consensus 471 Dyk 473 (608)
.+-
T Consensus 73 ~LQ 75 (168)
T 3o0z_A 73 QLQ 75 (168)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 34
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=71.25 E-value=41 Score=27.56 Aligned_cols=66 Identities=21% Similarity=0.254 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007324 493 MQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLET 566 (608)
Q Consensus 493 le~~reev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd~~~~Sr~s~~ELE~RlreLTE~LyqKQTqLEa 566 (608)
|++++-+.+.+.+....++..+......+..++.|+..+++-+.. ||..|..+-+-|-.-|+.||.
T Consensus 8 m~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~--------lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 8 MQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKG--------TEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Confidence 566777788888888888888888888888889998888877663 555566666666666666653
No 35
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=71.05 E-value=93 Score=31.50 Aligned_cols=26 Identities=46% Similarity=0.571 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007324 453 QKVAMLEVECATLQQELQDMEARLKR 478 (608)
Q Consensus 453 qqv~~lea~~esl~QELqDyk~ka~R 478 (608)
.+++-++.++-.++++|++..+...|
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 443 KKVEELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666677777777776665544
No 36
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=70.30 E-value=30 Score=30.58 Aligned_cols=45 Identities=18% Similarity=0.119 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007324 431 SMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEAR 475 (608)
Q Consensus 431 stAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~k 475 (608)
..+|..+.--+.+-++.+..|+-++..++...++|...|.|++.+
T Consensus 30 ~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~ 74 (131)
T 3tnu_A 30 SELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGR 74 (131)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 334444444455555666666666666666666666666666654
No 37
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=69.74 E-value=74 Score=29.83 Aligned_cols=34 Identities=18% Similarity=0.270 Sum_probs=15.6
Q ss_pred ccchhHHHHHHHHHHHHHHHhhHhHHHHHhhhhh
Q 007324 341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNME 374 (608)
Q Consensus 341 KdSqLavL~vrldeadq~l~~~e~~La~LQ~e~~ 374 (608)
.+.++..|...|.+-..+-...+..+..+..+.+
T Consensus 56 ~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElE 89 (154)
T 2ocy_A 56 RDDEVKRLREDIAKENELRTKAEEEADKLNKEVE 89 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555554444444444444444444443
No 38
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=69.50 E-value=53 Score=28.12 Aligned_cols=88 Identities=19% Similarity=0.216 Sum_probs=38.8
Q ss_pred hhhhhhhhhhhhhhhHhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHHHH
Q 007324 278 CAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKK 357 (608)
Q Consensus 278 c~~ls~rL~~lr~EN~QLEeLLr~E~~~~~S~~~r~k~lQ~ELs~ar~~v~k~EsdlteALAAKdSqLavL~vrldeadq 357 (608)
.+...+.++.||.+..-..+-.-.--..+..+..+..++.+|+.....+..-.|++|-.+ ...|......|+++.+
T Consensus 4 MdaIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~----ee~L~ea~~kLee~ek 79 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQV----LEELHKSEDSLLFAEE 79 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 344555666666655422222111111133333333333333333333333333333222 1233344556666666
Q ss_pred HHHhhHhHHHHH
Q 007324 358 QAALSEGNLASL 369 (608)
Q Consensus 358 ~l~~~e~~La~L 369 (608)
.+...++.+++|
T Consensus 80 ~~~~aE~ev~~L 91 (101)
T 3u1c_A 80 NAAKAESEVASL 91 (101)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666666666
No 39
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=66.65 E-value=24 Score=31.09 Aligned_cols=65 Identities=15% Similarity=0.324 Sum_probs=47.2
Q ss_pred cchhhHHHHHHHhhhhhhhhhhhhhhhHhHHHHHHH-HHH---HhHHHHHHHHHHHHHHhhhhhhhhhh
Q 007324 266 TGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVA-ERE---LSRSYEARIKQLEQELSVYKSEVTKV 330 (608)
Q Consensus 266 ~g~ske~rL~rvc~~ls~rL~~lr~EN~QLEeLLr~-E~~---~~~S~~~r~k~lQ~ELs~ar~~v~k~ 330 (608)
+.+.-...|-|.+..|..+|+.++.-|..||.-|+. |.. .+..+...+..|..+|..+|...++-
T Consensus 33 ~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~q 101 (129)
T 3tnu_B 33 NTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARL 101 (129)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 345556788899999999999999999988888862 111 15666677777777777776665554
No 40
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=66.34 E-value=41 Score=28.18 Aligned_cols=36 Identities=11% Similarity=0.303 Sum_probs=19.7
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007324 437 IQRIADERTAKAGELEQKVAMLEVECATLQQELQDM 472 (608)
Q Consensus 437 ~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDy 472 (608)
+....++-..+...|......++..+..++..|..+
T Consensus 8 ~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 8 LETKKTTIEEERNEITQRIGELKNKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444555555555555555555555555555555
No 41
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=64.41 E-value=68 Score=27.45 Aligned_cols=89 Identities=16% Similarity=0.253 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 007324 493 MQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKA 572 (608)
Q Consensus 493 le~~reev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd~~~~Sr~s~~ELE~RlreLTE~LyqKQTqLEaLatEKa 572 (608)
+.+++.++..+...-+.+...+..++++...+..|++.+..+.+..... ....-+.|..+.=-|+.-|-.+-++-+-=.
T Consensus 6 ~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~e-E~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~ 84 (96)
T 3q8t_A 6 SEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQE-EAQYQREYSEFKRQQLELDDELKSVENQMR 84 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999999999999999999999999999988853222 344555566665566666666666655555
Q ss_pred HHHHHhHHHH
Q 007324 573 AAEFQLEKEM 582 (608)
Q Consensus 573 Al~fQLER~e 582 (608)
-..-||+|+.
T Consensus 85 ~~~~qLdkL~ 94 (96)
T 3q8t_A 85 YAQMQLDKLK 94 (96)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 5555666654
No 42
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=63.85 E-value=7.2 Score=42.19 Aligned_cols=35 Identities=14% Similarity=0.228 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 007324 448 AGELEQKVAMLEVECATLQQELQDMEARLKRGQKK 482 (608)
Q Consensus 448 a~eLeqqv~~lea~~esl~QELqDyk~ka~Ril~g 482 (608)
..+|+.++..++.+...++.+|..++..|.+..++
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~ 371 (575)
T 2i1j_A 337 QQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQ 371 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 46788888888888888888888888877765433
No 43
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=61.31 E-value=85 Score=28.77 Aligned_cols=11 Identities=27% Similarity=0.359 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 007324 544 MELEKRYRELT 554 (608)
Q Consensus 544 ~ELE~RlreLT 554 (608)
..+|.+++.||
T Consensus 132 ~~yee~I~~L~ 142 (147)
T 2b9c_A 132 YHLENEVARLK 142 (147)
T ss_dssp HHHHHHHTTSC
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 44
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=61.28 E-value=1.2e+02 Score=29.22 Aligned_cols=19 Identities=32% Similarity=0.471 Sum_probs=2.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 007324 458 LEVECATLQQELQDMEARL 476 (608)
Q Consensus 458 lea~~esl~QELqDyk~ka 476 (608)
+...|.-|+.|+-|+++..
T Consensus 159 l~~~~QRLkdE~rDLk~El 177 (189)
T 2v71_A 159 LLVSVQRLKDEARDLRQEL 177 (189)
T ss_dssp HHCCC--------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555666666655543
No 45
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=59.03 E-value=35 Score=30.63 Aligned_cols=48 Identities=13% Similarity=0.155 Sum_probs=32.0
Q ss_pred hhhhhhhhhhhhhhHhHHHHHHHHHHH-hHHHHHHHHHHHHHHhhhhhhhhhh
Q 007324 279 AGLSSRLQEYKSENAQLEELLVAEREL-SRSYEARIKQLEQELSVYKSEVTKV 330 (608)
Q Consensus 279 ~~ls~rL~~lr~EN~QLEeLLr~E~~~-~~S~~~r~k~lQ~ELs~ar~~v~k~ 330 (608)
++|.+.++-||.|++ -|..|.+. +..|..++.+|+-||.-.|..+.++
T Consensus 18 e~Lkreie~lk~ele----~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a 66 (120)
T 3i00_A 18 ERLYREISGLKAQLE----NMKTESQRVVLQLKGHVSELEADLAEQQHLRQQA 66 (120)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444 44444444 8899999999999999888765554
No 46
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=58.79 E-value=12 Score=37.52 Aligned_cols=69 Identities=14% Similarity=0.164 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhh---hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHhhh
Q 007324 518 EAEVQKMRVEMAAMKRDAEHY---SREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEV 588 (608)
Q Consensus 518 ~ae~q~~e~El~~~Kqd~~~~---Sr~s~~ELE~RlreLTE~LyqKQTqLEaLatEKaAl~fQLER~eqq~k~~ 588 (608)
..++..++.|+..+++.+.+. .++... |.||++|..-++..+.+.+.|..+-+.+.-+|+++..++...
T Consensus 23 ~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~--~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 23 AAELEQLRREAAVLREQLENAVGSHAPTRS--ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp -----------------------------C--CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhhhcccCcccchh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555667777777766543 333333 889999999999999999999998888888888877776543
No 47
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=58.37 E-value=20 Score=30.49 Aligned_cols=43 Identities=21% Similarity=0.395 Sum_probs=25.8
Q ss_pred HHHHhhhhhhhhhhhhhhhHhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhh
Q 007324 274 LARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKV 330 (608)
Q Consensus 274 L~rvc~~ls~rL~~lr~EN~QLEeLLr~E~~~~~S~~~r~k~lQ~ELs~ar~~v~k~ 330 (608)
|--.|+-++.+|+.+..+|+.||+ ++..|++.|..++++-.+.
T Consensus 4 l~~e~e~~~~klq~~E~rN~~Le~--------------~v~~le~~Le~s~~~q~~~ 46 (79)
T 3cvf_A 4 MAAEREETQQKVQDLETRNAELEH--------------QLRAMERSLEEARAERERA 46 (79)
T ss_dssp ------CTTHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHH--------------HHHHHHHHHHHHHHHHHHH
Confidence 345699999999999999995554 4555555555555444444
No 48
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=58.26 E-value=1.9e+02 Score=30.71 Aligned_cols=43 Identities=16% Similarity=0.307 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 007324 494 QAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAE 536 (608)
Q Consensus 494 e~~reev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd~~ 536 (608)
+.++..+..+++.+..+-..+.-++.-+.+.+++|-+|--+++
T Consensus 116 ~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id 158 (390)
T 1deq_A 116 EDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDID 158 (390)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6688899999999999999999999999999999999998887
No 49
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=56.58 E-value=32 Score=30.38 Aligned_cols=64 Identities=25% Similarity=0.296 Sum_probs=42.7
Q ss_pred chhhHHHHHHHhhhhhhhhhhhhhhhHhHHHHHHH-HHHH---hHHHHHHHHHHHHHHhhhhhhhhhh
Q 007324 267 GQSKEARLARVCAGLSSRLQEYKSENAQLEELLVA-EREL---SRSYEARIKQLEQELSVYKSEVTKV 330 (608)
Q Consensus 267 g~ske~rL~rvc~~ls~rL~~lr~EN~QLEeLLr~-E~~~---~~S~~~r~k~lQ~ELs~ar~~v~k~ 330 (608)
.++-...|-|.+..|..+|+.++.-|..||.-|+. |..- +..+...+..|..+|..+|...++-
T Consensus 36 ~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~q 103 (131)
T 3tnu_A 36 GKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQ 103 (131)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456678888999999999999999988887762 2111 5566667777777777766665554
No 50
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=55.11 E-value=46 Score=28.44 Aligned_cols=50 Identities=18% Similarity=0.165 Sum_probs=37.2
Q ss_pred hhHHHHHHHhhhhhhhhhhhhhhhHhHHHHHHHHHHH----hHHHHHHHHHHHHHHhh
Q 007324 269 SKEARLARVCAGLSSRLQEYKSENAQLEELLVAEREL----SRSYEARIKQLEQELSV 322 (608)
Q Consensus 269 ske~rL~rvc~~ls~rL~~lr~EN~QLEeLLr~E~~~----~~S~~~r~k~lQ~ELs~ 322 (608)
.|+..+.-++.-|.-++.+||.+|. -|..|.+. -..+...+.+|++|.+.
T Consensus 13 ~KIq~avdtI~lLqmEieELKekN~----~L~~e~~e~~~~~~~L~~en~qLk~E~~~ 66 (81)
T 2jee_A 13 AKVQQAIDTITLLQMEIEELKEKNN----SLSQEVQNAQHQREELERENNHLKEQQNG 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 4667777788888999999999999 44445444 34477788888888743
No 51
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=55.03 E-value=1.4e+02 Score=28.21 Aligned_cols=87 Identities=11% Similarity=0.088 Sum_probs=63.8
Q ss_pred hhHHHHHhcccchhHHHH---HHHHHHHHHHHhhHhHHHHHhhhhhhhhhhhhhh--hhHHHHHHHHHHHHHHHHHHHHH
Q 007324 332 SNLAEALAAKNSEIETLV---SSIDALKKQAALSEGNLASLQMNMESIMRNRELT--ETRMIQALREELASVERRAEEER 406 (608)
Q Consensus 332 sdlteALAAKdSqLavL~---vrldeadq~l~~~e~~La~LQ~e~~RImqdh~~~--e~q~lqaLREeLa~AE~rL~~Eq 406 (608)
..+..|+....+--.+++ ..|+.+|.-+...+++|..+|...+.|--+..+- .-..++.||-++.++-+.+..-.
T Consensus 48 ~eFqtal~eAq~Atd~ye~ai~n~~sA~~~~d~lekKl~~aq~kL~~L~P~~P~Yak~~a~~~q~~~d~~~~~~~~~kA~ 127 (158)
T 3tul_A 48 KEFQTALGEAQEATDLYEASIKKTDTAKSVYDAATKKLTQAQNKLQSLDPADPGYAQAEAAVEQAGKEATEAKEALDKAT 127 (158)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555566 8899999999999999999998888876655444 57889999999999999998888
Q ss_pred HHhHHHHHHHHH
Q 007324 407 AAHNATKMAAME 418 (608)
Q Consensus 407 ~ah~Atr~aamE 418 (608)
.+|--++..+.+
T Consensus 128 ~A~~~a~~~a~~ 139 (158)
T 3tul_A 128 DATVKAGTDAKA 139 (158)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHhhHHHH
Confidence 887777766655
No 52
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=54.30 E-value=46 Score=31.97 Aligned_cols=74 Identities=11% Similarity=0.181 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHH
Q 007324 449 GELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEM 528 (608)
Q Consensus 449 ~eLeqqv~~lea~~esl~QELqDyk~ka~Ril~gs~e~Agqv~qle~~reev~~areq~~~~e~a~qe~~ae~q~~e~El 528 (608)
..++.++..+++.++.++.++..++.-...+.-. +.+++.++.....+++.+..+++++..++..+
T Consensus 79 ~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s--------------~~~~~~a~~~~~~~~a~l~~~~a~l~~a~a~l 144 (341)
T 3fpp_A 79 MELRAQRQQAEAELKLARVTYSRQQRLAQTQAVS--------------QQDLDNAATEMAVKQAQIGTIDAQIKRNQASL 144 (341)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSSST--------------THHHHHHHHHHHHTHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555666666666665555444332111 11333444444444444455555555556665
Q ss_pred HHHHHHHh
Q 007324 529 AAMKRDAE 536 (608)
Q Consensus 529 ~~~Kqd~~ 536 (608)
+..+..+.
T Consensus 145 ~~a~~~l~ 152 (341)
T 3fpp_A 145 DTAKTNLD 152 (341)
T ss_dssp TTTTTTTT
T ss_pred HHHHHhhh
Confidence 55555544
No 53
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=54.29 E-value=30 Score=31.98 Aligned_cols=60 Identities=20% Similarity=0.240 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHH-HHHHHHHHhhHhHHHHH
Q 007324 306 SRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSI-DALKKQAALSEGNLASL 369 (608)
Q Consensus 306 ~~S~~~r~k~lQ~ELs~ar~~v~k~EsdlteALAAKdSqLavL~vrl-deadq~l~~~e~~La~L 369 (608)
.+.+...++.|+.+|..-+.....+|.... .-+.+|+.|..+| ++|...++.-...-+.+
T Consensus 41 l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~----~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~ 101 (135)
T 2e7s_A 41 LSDRDDEVKRLREDIAKENELRTKAEEEAD----KLNKEVEDLTASLFDEANNLVADARMEKYAI 101 (135)
T ss_dssp TTTHHHHHHTHHHHHHHTTSHHHHHHHTTH----HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666677777777777666666653322 2234555555544 45555544443333333
No 54
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=54.02 E-value=85 Score=28.15 Aligned_cols=64 Identities=13% Similarity=0.147 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHhhh
Q 007324 309 YEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMN 372 (608)
Q Consensus 309 ~~~r~k~lQ~ELs~ar~~v~k~EsdlteALAAKdSqLavL~vrldeadq~l~~~e~~La~LQ~e 372 (608)
|-....+|+++|.+.+......|+-+.+.-..-..++.+|..+++.+.+.|..........+.+
T Consensus 11 lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~ 74 (112)
T 1x79_B 11 LQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRD 74 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344456667777776666666777888888888899999999999999888877776655443
No 55
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=49.66 E-value=97 Score=26.42 Aligned_cols=40 Identities=18% Similarity=0.158 Sum_probs=21.6
Q ss_pred hhhhhhhhhhhhhhhHhHHHHHHHHHHH-hHHHHHHHHHHHH
Q 007324 278 CAGLSSRLQEYKSENAQLEELLVAEREL-SRSYEARIKQLEQ 318 (608)
Q Consensus 278 c~~ls~rL~~lr~EN~QLEeLLr~E~~~-~~S~~~r~k~lQ~ 318 (608)
..|.++.+.+|=.||.||=+.= |.+-- -.+|++|+.+|--
T Consensus 4 ~~gmgkevEnLi~EN~eLl~TK-NaLnvvk~DLI~rvdELt~ 44 (77)
T 2w83_C 4 PEFMGREVENLILENTQLLETK-NALNIVKNDLIAKVDELTC 44 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Confidence 4577888888888888442210 22222 3455555544433
No 56
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=49.52 E-value=22 Score=29.24 Aligned_cols=40 Identities=30% Similarity=0.452 Sum_probs=32.5
Q ss_pred CCCcchhhhHHHHhhHHHhhhhcchhhHHHHHHHhhhhhhhhhhh
Q 007324 244 DPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEY 288 (608)
Q Consensus 244 ~sp~K~qdql~ea~~ll~~~~~~g~ske~rL~rvc~~ls~rL~~l 288 (608)
++|+.+|.-|+ +|.+..+...|.+-|-+|-..+|.+|.-+
T Consensus 7 Dgpit~qeyle-----vK~ALaaSeAkiQQLmkVN~~ls~Elr~m 46 (63)
T 2w6a_A 7 DGAVTLQEYLE-----LKKALATSEAKVQQLMKVNSSLSDELRKL 46 (63)
T ss_dssp CCSSCHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHH-----HHHHHHhhHHHHHHHHHHhHhhhHHHHHH
Confidence 57899998887 67788888889999999999999854433
No 57
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=49.09 E-value=1.2e+02 Score=25.65 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHHHhhHhHHHHH
Q 007324 345 IETLVSSIDALKKQAALSEGNLASL 369 (608)
Q Consensus 345 LavL~vrldeadq~l~~~e~~La~L 369 (608)
|......|+.+.+.+...++..++|
T Consensus 67 l~~a~~kLe~~ek~~~~AE~evasL 91 (101)
T 3u59_A 67 VKEAQEKLEQAEKKATDAEAEVASL 91 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555
No 58
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=47.95 E-value=53 Score=28.19 Aligned_cols=43 Identities=19% Similarity=0.315 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 007324 494 QAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAE 536 (608)
Q Consensus 494 e~~reev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd~~ 536 (608)
++.++++...+...-.++..+++.++..+.+..||++++..++
T Consensus 27 Q~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~e 69 (81)
T 1wt6_A 27 QSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERME 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677776666666666666666666666666666666555
No 59
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=47.89 E-value=1.4e+02 Score=26.16 Aligned_cols=44 Identities=25% Similarity=0.299 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHhHHHHHHHhh
Q 007324 544 MELEKRYRELTDLLYYK-QTQLETMASEKAAAEFQLEKEMNRLQE 587 (608)
Q Consensus 544 ~ELE~RlreLTE~LyqK-QTqLEaLatEKaAl~fQLER~eqq~k~ 587 (608)
..++.-|-+||=.||-= -+|+=.-.-+.+.++-..+++..|+++
T Consensus 50 ~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 50 DKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555566666532 233333333444455555555555554
No 60
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=47.75 E-value=79 Score=27.74 Aligned_cols=77 Identities=23% Similarity=0.254 Sum_probs=43.7
Q ss_pred HHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh----------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007324 500 VERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAE----------HYSREEHMELEKRYRELTDLLYYKQTQLETMAS 569 (608)
Q Consensus 500 v~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd~~----------~~Sr~s~~ELE~RlreLTE~LyqKQTqLEaLat 569 (608)
++.+..+...++.++......+.+|..+++.++.+++ -|..-=++|=. -=|+|..
T Consensus 4 ~~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERa---------------dREkl~~ 68 (94)
T 3jsv_C 4 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERH---------------AREKLVE 68 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHh
Confidence 4555556666666666666666666666666665554 22221122222 2367888
Q ss_pred HHHHHHHHhHHHHHHHhhhhhh
Q 007324 570 EKAAAEFQLEKEMNRLQEVQVC 591 (608)
Q Consensus 570 EKaAl~fQLER~eqq~k~~q~~ 591 (608)
||-.|.-+|+.+..++.....+
T Consensus 69 eKe~L~~ql~~lq~q~~~L~~~ 90 (94)
T 3jsv_C 69 KKEYLQEQLEQLQREFNKLKVG 90 (94)
T ss_dssp TTSHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888888888877665543
No 61
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=46.57 E-value=1.9e+02 Score=27.11 Aligned_cols=39 Identities=10% Similarity=0.082 Sum_probs=28.8
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007324 437 IQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEAR 475 (608)
Q Consensus 437 ~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~k 475 (608)
+.|....-..|...|+.+++-.+.-+++++-+|.+.|.-
T Consensus 106 ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v 144 (154)
T 2ocy_A 106 ARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKV 144 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556777788888888888888888888887753
No 62
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=45.37 E-value=1.6e+02 Score=26.57 Aligned_cols=28 Identities=7% Similarity=0.319 Sum_probs=11.2
Q ss_pred HHHHhHHHHHHhHHHHHHHHHHHHHHHH
Q 007324 502 RARQGQRDAENKLSSLEAEVQKMRVEMA 529 (608)
Q Consensus 502 ~areq~~~~e~a~qe~~ae~q~~e~El~ 529 (608)
.+...+......+.+++.+..++++++.
T Consensus 107 ~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 107 SSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334444444444443
No 63
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=43.08 E-value=98 Score=27.26 Aligned_cols=32 Identities=41% Similarity=0.472 Sum_probs=27.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007324 447 KAGELEQKVAMLEVECATLQQELQDMEARLKR 478 (608)
Q Consensus 447 ra~eLeqqv~~lea~~esl~QELqDyk~ka~R 478 (608)
.+..|..++..|+.+++.|+++...++.+..+
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888999999999999998888776
No 64
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=43.02 E-value=97 Score=28.87 Aligned_cols=18 Identities=11% Similarity=0.193 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 007324 519 AEVQKMRVEMAAMKRDAE 536 (608)
Q Consensus 519 ae~q~~e~El~~~Kqd~~ 536 (608)
++++.++.+++..+..++
T Consensus 112 a~l~~a~a~l~~a~~~l~ 129 (277)
T 2f1m_A 112 AAVTAAKAAVETARINLA 129 (277)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 334444555555555554
No 65
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=42.00 E-value=67 Score=30.25 Aligned_cols=51 Identities=12% Similarity=0.184 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHhhhhhhhh
Q 007324 543 HMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQVCQR 593 (608)
Q Consensus 543 ~~ELE~RlreLTE~LyqKQTqLEaLatEKaAl~fQLER~eqq~k~~q~~~~ 593 (608)
-+.|+.++++|.+-|--|...++.+-.|=-+|.+|+.-++..++..+.|-.
T Consensus 77 l~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~ 127 (152)
T 3a7p_A 77 LKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHS 127 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456889999999999999999999999999999999999999999998864
No 66
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=40.98 E-value=2.5e+02 Score=26.90 Aligned_cols=53 Identities=11% Similarity=0.271 Sum_probs=42.7
Q ss_pred hHHHHHHHHH----HHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007324 486 EANQAIQMQA----WQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHY 538 (608)
Q Consensus 486 ~Agqv~qle~----~reev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd~~~~ 538 (608)
+.+.|++|-. +++.+..+...++.+...+......++.++.++...+++.+-|
T Consensus 69 t~~~i~~m~~yI~llrErea~lEqkVaeq~e~Ve~e~q~Le~ar~el~qArke~eKf 125 (169)
T 3k29_A 69 TSDAILKMKAYIKVVAIQLSEEEEKVNKQKENVLAASKELERAEVELTKRRKEEEKT 125 (169)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777755 8999999999999998888888888888888888888877743
No 67
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=40.40 E-value=1.2e+02 Score=25.86 Aligned_cols=52 Identities=21% Similarity=0.236 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007324 421 VELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDM 472 (608)
Q Consensus 421 ~elE~qlAeastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDy 472 (608)
..||..+..++..++.+|-.+++-|.+-..|.+++..++.+.+.+.+|..-.
T Consensus 9 eqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qL 60 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHL 60 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3588888888888888999999999999999988888777666666555443
No 68
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=40.12 E-value=94 Score=30.07 Aligned_cols=40 Identities=3% Similarity=-0.009 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 007324 496 WQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDA 535 (608)
Q Consensus 496 ~reev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd~ 535 (608)
++.++..++..+..+++.+...++++..++.+++|++.-+
T Consensus 68 ~~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~ 107 (369)
T 4dk0_A 68 QINTLNTRKAALASYQAQLVARKTAYDVALSNYQRLSKLY 107 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444445444444455555554433
No 69
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=40.09 E-value=94 Score=30.06 Aligned_cols=23 Identities=22% Similarity=0.314 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhh
Q 007324 308 SYEARIKQLEQELSVYKSEVTKV 330 (608)
Q Consensus 308 S~~~r~k~lQ~ELs~ar~~v~k~ 330 (608)
.+.+.+...+.++..++....+.
T Consensus 81 ~~~a~l~~a~~~~~~a~~~~~r~ 103 (369)
T 4dk0_A 81 SYQAQLVARKTAYDVALSNYQRL 103 (369)
T ss_dssp HHHHHHHHHHHHHHHTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555666665555554
No 70
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=39.71 E-value=1.1e+02 Score=29.42 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=19.1
Q ss_pred HHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 007324 497 QDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDA 535 (608)
Q Consensus 497 reev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd~ 535 (608)
+.++..++.++..+++.+...++++..++.+++|++.=+
T Consensus 68 ~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~ 106 (341)
T 3fpp_A 68 ENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLA 106 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444445555455555555555554433
No 71
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=38.51 E-value=62 Score=29.89 Aligned_cols=28 Identities=32% Similarity=0.376 Sum_probs=20.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007324 540 REEHMELEKRYRELTDLLYYKQTQLETM 567 (608)
Q Consensus 540 r~s~~ELE~RlreLTE~LyqKQTqLEaL 567 (608)
|..+..+|.|..+|-.-|--|.+.|++|
T Consensus 95 r~~~~~~e~r~~~L~~ql~e~e~ll~~l 122 (135)
T 2e7s_A 95 RMEKYAIEILNKRLTEQLREKDMLLDTL 122 (135)
T ss_dssp THHHHHHHHHHHHHHHTTTHHHHCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567888888888888888888877764
No 72
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=38.38 E-value=2.1e+02 Score=25.20 Aligned_cols=67 Identities=25% Similarity=0.292 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh-------hhhhhhHHHHHHHHHHHHHHHHHHHH
Q 007324 496 WQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAE-------HYSREEHMELEKRYRELTDLLYYKQT 562 (608)
Q Consensus 496 ~reev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd~~-------~~Sr~s~~ELE~RlreLTE~LyqKQT 562 (608)
|..++..++............++.++.+++.||+-+--.+= ---|..+..+|.|..+|-+.|--|.|
T Consensus 24 ~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~d~d~ 97 (97)
T 2eqb_B 24 RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDT 97 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 44444444444444444444444444444444443322211 00255688899999999888876654
No 73
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=38.15 E-value=34 Score=34.35 Aligned_cols=39 Identities=8% Similarity=0.172 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 007324 494 QAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMK 532 (608)
Q Consensus 494 e~~reev~~areq~~~~e~a~qe~~ae~q~~e~El~~~K 532 (608)
..++.++..+..+..-....+.+++.++..++.|+++++
T Consensus 57 ~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 57 HQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555555555555555555555444444444444443
No 74
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=38.12 E-value=67 Score=25.01 Aligned_cols=38 Identities=26% Similarity=0.366 Sum_probs=30.7
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007324 437 IQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEA 474 (608)
Q Consensus 437 ~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ 474 (608)
|+|+-.-.+..+.+||.+|..|+.+...|..++..+..
T Consensus 13 A~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 13 ARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555678999999999999999999999987764
No 75
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=36.73 E-value=1.3e+02 Score=24.57 Aligned_cols=8 Identities=13% Similarity=0.301 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 007324 313 IKQLEQEL 320 (608)
Q Consensus 313 ~k~lQ~EL 320 (608)
+..|+.+.
T Consensus 8 m~~lk~e~ 15 (81)
T 1ic2_A 8 MQMLKLDK 15 (81)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 76
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=36.65 E-value=1.3e+02 Score=23.95 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=11.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHH
Q 007324 509 DAENKLSSLEAEVQKMRVEMAAMK 532 (608)
Q Consensus 509 ~~e~a~qe~~ae~q~~e~El~~~K 532 (608)
..+..+.+++..+|.++.|+..+|
T Consensus 53 ~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 53 QAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333344444445555555555554
No 77
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=35.17 E-value=92 Score=26.02 Aligned_cols=37 Identities=30% Similarity=0.373 Sum_probs=24.3
Q ss_pred hhhhhhhhhhhhhHhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhh
Q 007324 280 GLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKV 330 (608)
Q Consensus 280 ~ls~rL~~lr~EN~QLEeLLr~E~~~~~S~~~r~k~lQ~ELs~ar~~v~k~ 330 (608)
-++.+|+.+..+|..||+ ++..|++.|..++++-.+.
T Consensus 4 ~~~~kLq~~E~~N~~Le~--------------~v~~le~~Le~s~~~q~~~ 40 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEG--------------QLSEMEQRLEKSQSEQDAF 40 (72)
T ss_dssp HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHH--------------HHHHHHHHHHHHHHHHHHH
Confidence 467899999999995554 4555555555555544444
No 78
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=34.33 E-value=2.7e+02 Score=25.43 Aligned_cols=44 Identities=18% Similarity=0.046 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 007324 421 VELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECAT 464 (608)
Q Consensus 421 ~elE~qlAeastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~es 464 (608)
..||.++-++......+.|+|++-.+|..-++..+.-++-.++.
T Consensus 55 ~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~ 98 (147)
T 2b9c_A 55 EIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAEL 98 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777777777777666555544443333333
No 79
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=33.95 E-value=1.4e+02 Score=28.55 Aligned_cols=100 Identities=18% Similarity=0.330 Sum_probs=58.2
Q ss_pred hhHHHHhhHHHhhhhcchhhHHHHHHHhhhhhhhhhhhhhhhHhHHHHHHH----------HHHHhHHHHHHHHHHHHHH
Q 007324 251 DQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVA----------ERELSRSYEARIKQLEQEL 320 (608)
Q Consensus 251 dql~ea~~ll~~~~~~g~ske~rL~rvc~~ls~rL~~lr~EN~QLEeLLr~----------E~~~~~S~~~r~k~lQ~EL 320 (608)
+-|.+|+.|+|+.+..- +.|.-+ .+.+.+.|...|.--.-|.|||.+ +.+.+..|-.+.+.+|.-+
T Consensus 48 eDL~~AN~LiK~m~~~d---~~r~e~-~~k~~~eLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~i 123 (186)
T 1oxz_A 48 EDLRAANKLIKEMVQED---QKRMEK-ISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTL 123 (186)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTSSSCSCTTTTHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhccc---hhhHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccHHHHHHHHHHHHHHHHHH
Confidence 34789999999999653 333222 233344777777777778889985 5666777777777776666
Q ss_pred hhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHH
Q 007324 321 SVYKSEVTKVESNLAEALAAKNSEIETLVSSIDAL 355 (608)
Q Consensus 321 s~ar~~v~k~EsdlteALAAKdSqLavL~vrldea 355 (608)
-+.=..+.-=|.-|.+.|.+-| .|--+-.+|+..
T Consensus 124 ~~Li~e~~ddee~L~elL~~ND-~Ln~vl~kY~~~ 157 (186)
T 1oxz_A 124 FRLASDTEDNDEALAEILQAND-NLTQVINLYKQL 157 (186)
T ss_dssp HHHHHHCCSCHHHHHHHHHHHH-HHHHHHHHHTTH
T ss_pred HHHHHHccCCHHHHHHHHHhhH-HHHHHHHHHHHH
Confidence 3331111101234555555544 344444445443
No 80
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=32.58 E-value=2.3e+02 Score=24.03 Aligned_cols=68 Identities=18% Similarity=0.258 Sum_probs=43.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHH
Q 007324 447 KAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRV 526 (608)
Q Consensus 447 ra~eLeqqv~~lea~~esl~QELqDyk~ka~Ril~gs~e~Agqv~qle~~reev~~areq~~~~e~a~qe~~ae~q~~e~ 526 (608)
|+.-||++-+.|+..+..+++ +. +..-+ ..+..++..+|.++......+..+..++..|..
T Consensus 24 KVR~LEqqN~~Le~~i~~l~~-------~~-------~~~~~-----~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~ 84 (93)
T 3s4r_A 24 KVRFLEQQNKILLAELEQLKG-------QG-------KSRLG-----DLYEEEMRELRRQVDQLTNDKARVEVERDNLAE 84 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HH-------HHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh-------cc-------CCCcH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566667776666666554432 10 11111 225667888888888888888888777777777
Q ss_pred HHHHHHH
Q 007324 527 EMAAMKR 533 (608)
Q Consensus 527 El~~~Kq 533 (608)
++.++|.
T Consensus 85 ~~~~~k~ 91 (93)
T 3s4r_A 85 DIMRLRE 91 (93)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7777664
No 81
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=31.34 E-value=1.2e+02 Score=27.63 Aligned_cols=39 Identities=21% Similarity=0.331 Sum_probs=18.1
Q ss_pred hHHHHHhcccch----hHHHHHHHHHHHHHHHhhHhHHHHHhh
Q 007324 333 NLAEALAAKNSE----IETLVSSIDALKKQAALSEGNLASLQM 371 (608)
Q Consensus 333 dlteALAAKdSq----LavL~vrldeadq~l~~~e~~La~LQ~ 371 (608)
+|.+.|-.+.++ +..|...+..+.+.|.-....++.|..
T Consensus 57 tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~ 99 (121)
T 3mq7_A 57 ALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRR 99 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444 555555555555544444444444433
No 82
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=31.05 E-value=2.3e+02 Score=23.51 Aligned_cols=49 Identities=27% Similarity=0.369 Sum_probs=36.0
Q ss_pred hhhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHhhhhhhhhhh
Q 007324 331 ESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRN 379 (608)
Q Consensus 331 EsdlteALAAKdSqLavL~vrldeadq~l~~~e~~La~LQ~e~~RImqd 379 (608)
+.+..+|+..=+..++.+...+......+......+..++.....+++.
T Consensus 65 ~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~~ 113 (117)
T 2zqm_A 65 KTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALRP 113 (117)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3677788777777777777777777777777777777777777666653
No 83
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=30.79 E-value=3.3e+02 Score=25.35 Aligned_cols=63 Identities=13% Similarity=0.235 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh---hhhhHHHHHHHHHHHHHH
Q 007324 494 QAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHY---SREEHMELEKRYRELTDL 556 (608)
Q Consensus 494 e~~reev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd~~~~---Sr~s~~ELE~RlreLTE~ 556 (608)
....++|..+.....+++......+..+.+++.++.++--++... -..-+.+|..-|.+|+.+
T Consensus 73 d~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~ 138 (155)
T 2efr_A 73 DKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEEL 138 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334455666666666666655555566666666666665555532 122345666666666654
No 84
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=30.06 E-value=88 Score=25.74 Aligned_cols=30 Identities=23% Similarity=0.221 Sum_probs=18.8
Q ss_pred HHHHHHHHh-hhhhHHHHHHHHHHHHHHHHH
Q 007324 437 IQRIADERT-AKAGELEQKVAMLEVECATLQ 466 (608)
Q Consensus 437 ~QR~~~E~k-~ra~eLeqqv~~lea~~esl~ 466 (608)
+||.+-++| .++.+||.+|..++.....+.
T Consensus 19 AQRafReRK~~~i~~LE~~v~~le~~~~~l~ 49 (70)
T 1gd2_E 19 AQRAFRKRKEDHLKALETQVVTLKELHSSTT 49 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666665 566777777776665554443
No 85
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=29.64 E-value=2.2e+02 Score=23.71 Aligned_cols=45 Identities=18% Similarity=0.299 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q 007324 515 SSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYK 560 (608)
Q Consensus 515 qe~~ae~q~~e~El~~~Kqd~~~~Sr~s~~ELE~RlreLTE~LyqK 560 (608)
++++.+-+.++--+..+++++++ |+..+.-+..-+..+.+.|-.|
T Consensus 10 q~~E~~N~~Le~~v~~le~~Le~-s~~~q~~~~~Elk~~~e~Ld~K 54 (72)
T 3cve_A 10 QEVEIRNKDLEGQLSEMEQRLEK-SQSEQDAFRSNLKTLLEILDGK 54 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhH
Confidence 33333333334444444444443 3333333333344444444333
No 86
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=28.50 E-value=36 Score=23.87 Aligned_cols=20 Identities=45% Similarity=0.567 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 007324 448 AGELEQKVAMLEVECATLQQ 467 (608)
Q Consensus 448 a~eLeqqv~~lea~~esl~Q 467 (608)
-+.|+|+++.++...+||+|
T Consensus 9 ndaleqkiaalkqkiaslkq 28 (28)
T 3ra3_A 9 NDALEQKIAALKQKIASLKQ 28 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHhcC
Confidence 35678888888888887765
No 87
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=28.43 E-value=3.9e+02 Score=25.40 Aligned_cols=100 Identities=13% Similarity=0.253 Sum_probs=0.0
Q ss_pred hHhHHHHHHHHHHHhHHHHHH---HHHHHHHHhhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHH
Q 007324 292 NAQLEELLVAERELSRSYEAR---IKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLAS 368 (608)
Q Consensus 292 N~QLEeLLr~E~~~~~S~~~r---~k~lQ~ELs~ar~~v~k~EsdlteALAAKdSqLavL~vrldeadq~l~~~e~~La~ 368 (608)
+.+|.+||.++..++.+|... ...++.++... .++.+-+-.+-..|+.++..+++.=..+...+.....
T Consensus 40 ~~eL~~LL~~~~dlL~~~v~~l~~~q~~~~~~e~l--------~s~ae~ll~l~~~Le~~r~~l~~~l~~~~~L~~~~~~ 111 (192)
T 2p22_C 40 SKEIIDLIQTHRHQLELYVTKFNPLTDFAGKIHAF--------RDQFKQLEENFEDLHEQKDKVQALLENARILESKYVA 111 (192)
T ss_dssp THHHHHHHHHCHHHHHHHGGGGSCCHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHhchhHHHHHHHHHHH--------HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred Hhhhh-hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 007324 369 LQMNM-ESIMRNRELTETRMIQALREELASVERRAEEE 405 (608)
Q Consensus 369 LQ~e~-~RImqdh~~~e~q~lqaLREeLa~AE~rL~~E 405 (608)
.+.++ ..|+.+.+. ++|..+|..|=...+.|
T Consensus 112 k~q~~~~~ls~~~sp------~~L~~~L~~a~~e~eee 143 (192)
T 2p22_C 112 SWQDYHSEFSKKYGD------IALKKKLEQNTKKLDEE 143 (192)
T ss_dssp HHHHHHHHHHHTSSH------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCH------HHHHHHHHHHHHHHHHH
No 88
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=27.81 E-value=1.1e+02 Score=28.44 Aligned_cols=100 Identities=18% Similarity=0.344 Sum_probs=54.7
Q ss_pred hhHHHHhhHHHhhhhcchhhHHHHHHHhhhhhhhhhhhhhhhHhHHHHHHH----------HHHHhHHHHHHHHHHHHHH
Q 007324 251 DQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVA----------ERELSRSYEARIKQLEQEL 320 (608)
Q Consensus 251 dql~ea~~ll~~~~~~g~ske~rL~rvc~~ls~rL~~lr~EN~QLEeLLr~----------E~~~~~S~~~r~k~lQ~EL 320 (608)
+-|.+|+.|+|+.+..- +.|.-++ +.+.+.|...|.--.-|.|||.+ +.+.+..|-.+.+.+|.-+
T Consensus 32 eDL~~AN~LiK~m~~~d---~~r~e~~-~k~~seLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~i 107 (158)
T 1naf_A 32 EDLRAANKLIKEMVQED---QKRMEKI-SKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTL 107 (158)
T ss_dssp THHHHHHHHHHHHHHHH---HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTTTC-----CCTTHHHHHHHHHHTHHHHH
T ss_pred hhHHHHHHHHHHHhccc---hhhHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcccHHHHHHHHHHHHHHHHHH
Confidence 35889999999999643 3343332 33344777777777778889984 2344555555555555544
Q ss_pred hhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHHH
Q 007324 321 SVYKSEVTKVESNLAEALAAKNSEIETLVSSIDAL 355 (608)
Q Consensus 321 s~ar~~v~k~EsdlteALAAKdSqLavL~vrldea 355 (608)
-+.=....-=|.-|.+.|.+-| .|--+-.+|+..
T Consensus 108 ~~Li~e~~ddee~L~elL~~ND-~Ln~vl~kY~~~ 141 (158)
T 1naf_A 108 FRLASDTEDNDEALAEILQAND-NLTQVINLYKQL 141 (158)
T ss_dssp HHHHHHCCSCHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHccCCHHHHHHHHHhhH-HHHHHHHHHHHH
Confidence 3221111000234555555544 344444455443
No 89
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=27.79 E-value=6.1e+02 Score=28.22 Aligned_cols=101 Identities=15% Similarity=0.272 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHhhHhHHHHHhhhhhhhhhhhhhhh---hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 007324 349 VSSIDALKKQAALSEGNLASLQMNMESIMRNRELTE---TRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEH 425 (608)
Q Consensus 349 ~vrldeadq~l~~~e~~La~LQ~e~~RImqdh~~~e---~q~lqaLREeLa~AE~rL~~Eq~ah~Atr~aamERE~elE~ 425 (608)
+.-|+..++- ....++.|....+.|.+++.+.+ +.+++.||.++..+- -. + . ....+- .+||+
T Consensus 52 QglLdkqErD---ltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~-dN--d--N----tynE~S--~ELRR 117 (562)
T 3ghg_A 52 KGLIDEVNQD---FTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSAN-NR--D--N----TYNRVS--EDLRS 117 (562)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHH-HH--H--H----HHHHTT--HHHHH
T ss_pred hhhHHhhcCc---HHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhh-cc--c--h----hHHHHH--HHHHH
Confidence 3334444443 34557777777888888888885 677777777776554 11 1 1 000110 12444
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007324 426 RAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLK 477 (608)
Q Consensus 426 qlAeastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka~ 477 (608)
++. .|++.++. -=++++.|+..++.+..+++..|....
T Consensus 118 rIq-------yLKekVdn-------QlsnIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 118 RIE-------VLKRKVIE-------KVQHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHH-------HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-------HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322 13444333 335667777777888888877766543
No 90
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=27.49 E-value=3.1e+02 Score=23.92 Aligned_cols=42 Identities=21% Similarity=0.325 Sum_probs=30.5
Q ss_pred HHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHhhhhhhhhh
Q 007324 337 ALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMR 378 (608)
Q Consensus 337 ALAAKdSqLavL~vrldeadq~l~~~e~~La~LQ~e~~RImq 378 (608)
.|+++..+|..|+..++...+.=......+.+++.++..|+.
T Consensus 62 eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~~Ek~~L~~ 103 (107)
T 2no2_A 62 ELATSQRELQVLQGSLETSAQSEANWAAEFAELEKERDSLVS 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 377777777777777777777766677777777777777765
No 91
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=27.30 E-value=88 Score=28.42 Aligned_cols=19 Identities=26% Similarity=0.345 Sum_probs=14.0
Q ss_pred hhhhHHHHHHHHHHHHHHH
Q 007324 539 SREEHMELEKRYRELTDLL 557 (608)
Q Consensus 539 Sr~s~~ELE~RlreLTE~L 557 (608)
.+..+..+|.|+++|...|
T Consensus 51 ak~~q~~~e~ri~~Le~~L 69 (158)
T 1grj_A 51 AREQQGFCEGRIKDIEAKL 69 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556788888888877765
No 92
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=27.08 E-value=3.5e+02 Score=24.42 Aligned_cols=43 Identities=5% Similarity=0.132 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 007324 492 QMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRD 534 (608)
Q Consensus 492 qle~~reev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd 534 (608)
++-.++++.+.++..+.+....+..+.+++..+..+++..+++
T Consensus 69 El~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e 111 (138)
T 3hnw_A 69 DYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKE 111 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555444444444444444444444443333333
No 93
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=26.85 E-value=1.8e+02 Score=25.94 Aligned_cols=46 Identities=20% Similarity=0.195 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 007324 434 LARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRG 479 (608)
Q Consensus 434 L~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka~Ri 479 (608)
|..++..+.+.+..+.+|.+++..++..++.+..|--=|=.|.+.|
T Consensus 6 ~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdI 51 (106)
T 4e61_A 6 LVAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDI 51 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3447888888888899999999999999999988877677776664
No 94
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=26.59 E-value=3.1e+02 Score=24.06 Aligned_cols=63 Identities=17% Similarity=0.240 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 007324 388 IQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQK 454 (608)
Q Consensus 388 lqaLREeLa~AE~rL~~Eq~ah~Atr~aamERE~elE~qlAeastAL~~~QR~~~E~k~ra~eLeqq 454 (608)
|..=|+.|..|+..+..+ ....|-|++ -+.++..++|++=+-.+..+..+++-++.+..|.++
T Consensus 31 l~~A~dKl~~A~~Am~~~-~y~~Ar~lA---EqAe~DArLAeAka~~~Ka~~~~~el~~~I~~LrqE 93 (98)
T 4fm3_A 31 LKLAQDKYAAAQIAMTAE-SYKKARLLA---EQAELDARLAESKVLTQKSKDQLGELDKSLKRLRKQ 93 (98)
T ss_dssp HHHHHHHHHHHHHHHHTT-CHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcc-cHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777777766332 123444433 245677788877666555655555555555444443
No 95
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=26.00 E-value=7e+02 Score=27.54 Aligned_cols=67 Identities=16% Similarity=0.304 Sum_probs=54.5
Q ss_pred cchhHHHHHHHHHHHHHHHhhHhHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007324 342 NSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAA 408 (608)
Q Consensus 342 dSqLavL~vrldeadq~l~~~e~~La~LQ~e~~RImqdh~~~e~q~lqaLREeLa~AE~rL~~Eq~a 408 (608)
..|+..|...++.+...+..-+..|..|-.-..+=-.+|+..|+.|+..+|.....--.+.+.||++
T Consensus 145 ~~q~~~LekAl~s~~~i~~~e~~~l~~L~~AL~kE~~~Rt~dE~~mi~~yr~k~~aL~~aIe~Er~~ 211 (526)
T 3iyk_A 145 EKQFDILNKAVTSYNKILTEEDLQMRRLATALQKEIGERTHAETVMVKEYRDKIDALKNAIEVERDG 211 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4588889999999988888888888887444444445666669999999999999998999999887
No 96
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=24.94 E-value=2.6e+02 Score=29.99 Aligned_cols=34 Identities=18% Similarity=0.094 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHHHHHHhhHhHHHHHhhhhhhhh
Q 007324 344 EIETLVSSIDALKKQAALSEGNLASLQMNMESIM 377 (608)
Q Consensus 344 qLavL~vrldeadq~l~~~e~~La~LQ~e~~RIm 377 (608)
..+.|+.+..+.+..+...+..+.+++.+...++
T Consensus 117 ~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l 150 (501)
T 1wle_A 117 QYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRA 150 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777777777777777776554
No 97
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=24.60 E-value=2.6e+02 Score=23.40 Aligned_cols=51 Identities=14% Similarity=0.231 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007324 485 EEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHY 538 (608)
Q Consensus 485 e~Agqv~qle~~reev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd~~~~ 538 (608)
++.|-+-+ ++.-+....+.++....-+.+++.+++.-+.++..++-+++-|
T Consensus 16 ~~mgti~e---Lq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 16 EGRGSLRD---LQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp ---CHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCcHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44554444 4444555555566666666667777777778887777777765
No 98
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=23.99 E-value=1.8e+02 Score=24.18 Aligned_cols=41 Identities=24% Similarity=0.340 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHH
Q 007324 545 ELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRL 585 (608)
Q Consensus 545 ELE~RlreLTE~LyqKQTqLEaLatEKaAl~fQLER~eqq~ 585 (608)
+||.|+-+|=.-|.+=.-.+|.|...=+.++.++.++..++
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql 51 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELSEALADARLTGARNAELI 51 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444443
No 99
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=23.96 E-value=1e+02 Score=28.11 Aligned_cols=19 Identities=26% Similarity=0.480 Sum_probs=14.7
Q ss_pred hhhhHHHHHHHHHHHHHHH
Q 007324 539 SREEHMELEKRYRELTDLL 557 (608)
Q Consensus 539 Sr~s~~ELE~RlreLTE~L 557 (608)
.+..+.++|+|+++|..+|
T Consensus 51 ak~~q~~~e~rI~~L~~~L 69 (158)
T 2p4v_A 51 NKKRLREIDRRVRYLTKCM 69 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4567788888888887765
No 100
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=23.68 E-value=2.6e+02 Score=21.85 Aligned_cols=36 Identities=8% Similarity=0.160 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHH
Q 007324 495 AWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAA 530 (608)
Q Consensus 495 ~~reev~~areq~~~~e~a~qe~~ae~q~~e~El~~ 530 (608)
.++.++..+-.+-......+++.+.++.+|..+|++
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~ 48 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445444444444444555554444444444433
No 101
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=23.53 E-value=3.9e+02 Score=23.78 Aligned_cols=105 Identities=16% Similarity=0.219 Sum_probs=60.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHH
Q 007324 446 AKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMR 525 (608)
Q Consensus 446 ~ra~eLeqqv~~lea~~esl~QELqDyk~ka~Ril~gs~e~Agqv~qle~~reev~~areq~~~~e~a~qe~~ae~q~~e 525 (608)
+|..+|..++..|..++++++--+..-+ .-+..++..++.++..+|...+.....+..+ |
T Consensus 3 k~~rdL~~~~~~L~~E~e~~k~K~~~~~-------------~e~~~~~~~Lq~El~~lr~~~~~l~~~iReL-------E 62 (111)
T 2v66_B 3 QRNRDLQADNQRLKYEVEALKEKLEHQY-------------AQSYKQVSVLEDDLSQTRAIKEQLHKYVREL-------E 62 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H
Confidence 4556666666666666666554433311 1223345567778877777666665555555 3
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 007324 526 VEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAE 575 (608)
Q Consensus 526 ~El~~~Kqd~~~~Sr~s~~ELE~RlreLTE~LyqKQTqLEaLatEKaAl~ 575 (608)
+.=.-+-+..++ ...|-.++|.+|... |-+-.+||.=--||-.|.
T Consensus 63 q~NDDLER~~R~-t~~SLeD~E~k~n~a----iErnalLE~El~EKe~L~ 107 (111)
T 2v66_B 63 QANDDLERAKRA-TIVSLEDFEQRLNQA----IERNAFLESELDEKESLL 107 (111)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HhchHHHHHHHH-HHhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 332222233332 345678899999875 445666666556776664
No 102
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=22.28 E-value=1.1e+02 Score=26.45 Aligned_cols=40 Identities=18% Similarity=0.258 Sum_probs=30.3
Q ss_pred HHHHHhhhhhhhhhhhhhhhHhHHHHHHHHHHHhHHHHHHH
Q 007324 273 RLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARI 313 (608)
Q Consensus 273 rL~rvc~~ls~rL~~lr~EN~QLEeLLr~E~~~~~S~~~r~ 313 (608)
.|-..+.++..++..|+.||.+|-+| ...++-|++++.++
T Consensus 42 ~Lh~~ie~~~eEi~~Lk~en~~L~el-A~~~q~la~~i~~L 81 (83)
T 1wlq_A 42 KLHKEIEQKDSEIARLRKENKDLAEV-AEHVQYMAEVIERL 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHH-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHh
Confidence 35666778888888899999877653 56677788888764
No 103
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=22.05 E-value=3.2e+02 Score=22.25 Aligned_cols=46 Identities=17% Similarity=0.203 Sum_probs=31.8
Q ss_pred hhhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHhhhhhhh
Q 007324 331 ESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESI 376 (608)
Q Consensus 331 EsdlteALAAKdSqLavL~vrldeadq~l~~~e~~La~LQ~e~~RI 376 (608)
+.+..+|+..=+..++.+..++......+...+..+..++.....+
T Consensus 60 ~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~~ 105 (107)
T 1fxk_A 60 RVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQEA 105 (107)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677777777667777777777777777777777777776555443
No 104
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=21.72 E-value=7.2e+02 Score=26.18 Aligned_cols=83 Identities=16% Similarity=0.128 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHH-HHHHHHHHHHHHHhHHHH
Q 007324 432 MALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQ-MQAWQDEVERARQGQRDA 510 (608)
Q Consensus 432 tAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka~Ril~gs~e~Agqv~q-le~~reev~~areq~~~~ 510 (608)
..|-..||.++..=+....+-++|..+..++..+.+-+++.-.+ .++.++...+.+.+ .....+++..+...+...
T Consensus 27 d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~~~~---~Q~~~~d~~e~~tq~skkml~~~~~~e~~~~~~ 103 (409)
T 1m1j_C 27 DFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYPS---EKQTLPQSIEQLTQKSKKIIEEIIRYENTILAH 103 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS---STTCCSSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---ccCCCCCchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 45566788887777777777777777777777777777776333 23323322232222 233444555544444444
Q ss_pred HHhHHHH
Q 007324 511 ENKLSSL 517 (608)
Q Consensus 511 e~a~qe~ 517 (608)
+..+..+
T Consensus 104 ~~~i~~l 110 (409)
T 1m1j_C 104 ENTIQQL 110 (409)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 105
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=21.67 E-value=2.2e+02 Score=22.59 Aligned_cols=38 Identities=21% Similarity=0.282 Sum_probs=23.6
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007324 437 IQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEA 474 (608)
Q Consensus 437 ~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ 474 (608)
+.|+=.-.+.++.+|+.+|..|+.+-..|..++..++.
T Consensus 21 ArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~ 58 (63)
T 2dgc_A 21 ARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKK 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444566777777777777776666666655443
No 106
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=20.75 E-value=3.3e+02 Score=23.04 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 007324 494 QAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDA 535 (608)
Q Consensus 494 e~~reev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd~ 535 (608)
+.+...-..+.++++.++..+..-+.+...++.|+.++-+-+
T Consensus 16 q~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~L 57 (79)
T 3cvf_A 16 QDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLL 57 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444444443333
No 107
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=20.74 E-value=2.8e+02 Score=23.15 Aligned_cols=38 Identities=21% Similarity=0.335 Sum_probs=21.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007324 437 IQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEA 474 (608)
Q Consensus 437 ~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ 474 (608)
+.|+-+-++.+..+++++|..|+.+...|+.++..++.
T Consensus 27 akrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~ 64 (78)
T 1gu4_A 27 VRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSR 64 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555666666666665555555555555544433
No 108
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A
Probab=20.73 E-value=1.7e+02 Score=26.61 Aligned_cols=99 Identities=17% Similarity=0.334 Sum_probs=54.6
Q ss_pred hhHHHHhhHHHhhhhcchhhHHHHHHHhhhhhhhhhhhhhhhHhHHHHHHH----------HHHHhHHHHHHHHHHHHHH
Q 007324 251 DQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVA----------ERELSRSYEARIKQLEQEL 320 (608)
Q Consensus 251 dql~ea~~ll~~~~~~g~ske~rL~rvc~~ls~rL~~lr~EN~QLEeLLr~----------E~~~~~S~~~r~k~lQ~EL 320 (608)
+-|.+|+.|+|+.+..- +.|.-++ +.+.+.|...|.--.-|.|||.+ +.+.+..|-.+.+.+|.-+
T Consensus 23 ~DL~~AN~LiK~m~~~d---~~r~e~~-~k~~~eLe~v~~n~~LL~EML~~~~p~~~~~~~d~Ell~eL~~~ck~~qp~i 98 (140)
T 1o3x_A 23 EDLRAANKLIKEMVQED---QKRMEKI-SKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTL 98 (140)
T ss_dssp ----CCCSSTHHHHHHH---HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccc---hhhHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccHHHHHHHHHHHHHHHHHH
Confidence 34789999999999643 3333322 33344777777777788889985 4566777777777666655
Q ss_pred hhhhhhhhhhhhhHHHHHhcccchhHHHHHHHHH
Q 007324 321 SVYKSEVTKVESNLAEALAAKNSEIETLVSSIDA 354 (608)
Q Consensus 321 s~ar~~v~k~EsdlteALAAKdSqLavL~vrlde 354 (608)
-+.=....-=|.-|.+.|.+-| .|--+-.+|+.
T Consensus 99 ~~li~e~~ddee~l~elL~~ND-~ln~vl~kY~~ 131 (140)
T 1o3x_A 99 FRLASDTEDNDEALAEILQAND-NLTQVINLYKQ 131 (140)
T ss_dssp HHHHTTCTTCHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHccCCHHHHHHHHHhhH-HHHHHHHHHHH
Confidence 3331111101234555555544 34444444443
No 109
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=20.51 E-value=1.6e+02 Score=24.51 Aligned_cols=39 Identities=21% Similarity=0.370 Sum_probs=26.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCc
Q 007324 446 AKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSP 484 (608)
Q Consensus 446 ~ra~eLeqqv~~lea~~esl~QELqDyk~ka~Ril~gs~ 484 (608)
.+...++..++.++..+..+..++.+++......+.+++
T Consensus 77 ~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~~~~ 115 (117)
T 2zqm_A 77 EKIETLEVRLNALERQEKKLNEKLKELTAQIQSALRPPT 115 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 445556667777777777777777777777777776544
No 110
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=20.18 E-value=5.3e+02 Score=24.00 Aligned_cols=49 Identities=20% Similarity=0.127 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 007324 416 AMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECAT 464 (608)
Q Consensus 416 amERE~elE~qlAeastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~es 464 (608)
+-+|+..+|.+|...+.-|.-++++++..-|.+.-|+..+.-++-.+..
T Consensus 68 asqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~ 116 (155)
T 2efr_A 68 YSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYA 116 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777888888877777777666666666666555555555544443
Done!