Query 007324
Match_columns 608
No_of_seqs 34 out of 36
Neff 2.8
Searched_HMMs 13730
Date Mon Mar 25 22:54:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007324.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007324hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fxka_ a.2.5.1 (A:) Prefoldin 55.5 21 0.0015 28.4 7.8 46 332-377 61-106 (107)
2 d1fxkc_ a.2.5.1 (C:) Prefoldin 33.0 1.1E+02 0.0079 24.2 10.6 46 332-377 84-129 (133)
3 d1seta1 a.2.7.1 (A:1-110) Sery 29.1 1.2E+02 0.0088 23.5 8.4 37 341-377 62-98 (110)
4 d2f23a1 a.2.1.1 (A:3-77) GreA 20.3 1.5E+02 0.011 22.6 7.1 22 537-558 47-68 (75)
5 d1fxka_ a.2.5.1 (A:) Prefoldin 20.0 1.8E+02 0.013 22.4 9.2 85 492-590 9-100 (107)
6 d1urfa_ a.2.6.1 (A:) Protein k 19.3 1.9E+02 0.014 22.3 9.4 66 411-477 7-74 (81)
7 d1urfa_ a.2.6.1 (A:) Protein k 17.6 1.2E+02 0.0089 23.5 6.0 62 311-380 8-73 (81)
8 d1qvra2 c.37.1.20 (A:149-535) 16.3 4.1E+02 0.03 24.9 11.7 103 245-356 229-333 (387)
9 d1l2pa_ f.23.21.1 (A:) F1F0 AT 14.6 1.5E+02 0.011 21.9 5.6 55 468-528 3-59 (61)
10 d1o3xa_ a.7.8.1 (A:) ADP-ribos 10.0 3.7E+02 0.027 21.3 7.1 95 256-355 2-106 (112)
No 1
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=55.47 E-value=21 Score=28.36 Aligned_cols=46 Identities=20% Similarity=0.231 Sum_probs=36.7
Q ss_pred hhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHhhhhhhhh
Q 007324 332 SNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIM 377 (608)
Q Consensus 332 sdlteALAAKdSqLavL~vrldeadq~l~~~e~~La~LQ~e~~RIm 377 (608)
.+..+++..=+..++.+..++...+.+....+..+..++.....+|
T Consensus 61 ~~~~e~~~~l~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~~l~~~~ 106 (107)
T d1fxka_ 61 VAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQEAM 106 (107)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677888777788888888888888888888888888877766554
No 2
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=33.00 E-value=1.1e+02 Score=24.19 Aligned_cols=46 Identities=15% Similarity=0.253 Sum_probs=29.4
Q ss_pred hhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHhhhhhhhh
Q 007324 332 SNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIM 377 (608)
Q Consensus 332 sdlteALAAKdSqLavL~vrldeadq~l~~~e~~La~LQ~e~~RIm 377 (608)
-++.+|+--=+..+..|...++.....+......+..++..+.+|+
T Consensus 84 ~~~~eA~~~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~~~l~ 129 (133)
T d1fxkc_ 84 KNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777665666666666666666666666666666666665554
No 3
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=29.07 E-value=1.2e+02 Score=23.51 Aligned_cols=37 Identities=24% Similarity=0.296 Sum_probs=24.9
Q ss_pred ccchhHHHHHHHHHHHHHHHhhHhHHHHHhhhhhhhh
Q 007324 341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIM 377 (608)
Q Consensus 341 KdSqLavL~vrldeadq~l~~~e~~La~LQ~e~~RIm 377 (608)
+......|..+..+....+...+..+..++.+...+|
T Consensus 62 ~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~l 98 (110)
T d1seta1 62 PPEEKEALIARGKALGEEAKRLEEALREKEARLEALL 98 (110)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666777777777777777777777766655
No 4
>d2f23a1 a.2.1.1 (A:3-77) GreA transcript cleavage protein, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=20.26 E-value=1.5e+02 Score=22.58 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=18.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHH
Q 007324 537 HYSREEHMELEKRYRELTDLLY 558 (608)
Q Consensus 537 ~~Sr~s~~ELE~RlreLTE~Ly 558 (608)
|+-+..+..||.|+.+|.+.|-
T Consensus 47 ~aAke~q~~~e~rI~eLe~~L~ 68 (75)
T d2f23a1 47 EAAKQEKARIEARIDSLEDILS 68 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3367789999999999998874
No 5
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=20.05 E-value=1.8e+02 Score=22.44 Aligned_cols=85 Identities=31% Similarity=0.368 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh-------hhhhHHHHHHHHHHHHHHHHHHHHHH
Q 007324 492 QMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHY-------SREEHMELEKRYRELTDLLYYKQTQL 564 (608)
Q Consensus 492 qle~~reev~~areq~~~~e~a~qe~~ae~q~~e~El~~~Kqd~~~~-------Sr~s~~ELE~RlreLTE~LyqKQTqL 564 (608)
+++.++.++..+..++...+..+.+. +..-.||..+..+..-| =..+..++-..|. +.+
T Consensus 9 ~~q~lq~el~~~~~q~~~le~q~~E~----~~vl~eL~~l~~d~~vyk~vG~vLv~~~~~e~~~~l~----------~~~ 74 (107)
T d1fxka_ 9 QFQQLQQQAQAISVQKQTVEMQINET----QKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQ----------EKL 74 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHH----------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHcCCcccHHHHHhcchhhcCcHHHHHHHHH----------HHH
Confidence 45566666666666666655555443 22233455555555444 1123444333332 344
Q ss_pred HHhhhHHHHHHHHhHHHHHHHhhhhh
Q 007324 565 ETMASEKAAAEFQLEKEMNRLQEVQV 590 (608)
Q Consensus 565 EaLatEKaAl~fQLER~eqq~k~~q~ 590 (608)
|.|..+-..+.-|++.+..+|.+.+.
T Consensus 75 e~l~~~i~~l~~q~~~l~~~l~~~~~ 100 (107)
T d1fxka_ 75 ETLQLREKTIERQEERVMKKLQEMQV 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555556666666666555543
No 6
>d1urfa_ a.2.6.1 (A:) Protein kinase c-like 1, pkn/prk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.31 E-value=1.9e+02 Score=22.35 Aligned_cols=66 Identities=9% Similarity=0.147 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007324 411 ATKMAAMEREVELEHRAAEASMALARIQRI--ADERTAKAGELEQKVAMLEVECATLQQELQDMEARLK 477 (608)
Q Consensus 411 Atr~aamERE~elE~qlAeastAL~~~QR~--~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka~ 477 (608)
..|++.++++-..|.++.+.+.-|.++=-. ..|+ +-..+.++.+.....-++-|++.|..|.+-..
T Consensus 7 ~~rl~~L~~~L~iE~kvkeGaEnm~k~~~~~~~~Dr-K~l~eaq~~l~eS~~Ki~lLr~~L~~~~q~~~ 74 (81)
T d1urfa_ 7 LSRVAGLEKQLAIELKVKQGAENMIQTYSNGSTKDR-KLLLTAQQMLQDSKTKIDIIRMQLRRALQADQ 74 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 358888888899999988888884443111 1133 33477788888888888888888888776543
No 7
>d1urfa_ a.2.6.1 (A:) Protein kinase c-like 1, pkn/prk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.57 E-value=1.2e+02 Score=23.53 Aligned_cols=62 Identities=11% Similarity=0.226 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhhhhhhhhhh--h--hhHHHHHhcccchhHHHHHHHHHHHHHHHhhHhHHHHHhhhhhhhhhhh
Q 007324 311 ARIKQLEQELSVYKSEVTKV--E--SNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNR 380 (608)
Q Consensus 311 ~r~k~lQ~ELs~ar~~v~k~--E--sdlteALAAKdSqLavL~vrldeadq~l~~~e~~La~LQ~e~~RImqdh 380 (608)
.|+.+|+..|. ++.- | .+|..++..+.+. =+..+.+|.+.+..+..+|+-|.....++.+..
T Consensus 8 ~rl~~L~~~L~-----iE~kvkeGaEnm~k~~~~~~~~---DrK~l~eaq~~l~eS~~Ki~lLr~~L~~~~q~~ 73 (81)
T d1urfa_ 8 SRVAGLEKQLA-----IELKVKQGAENMIQTYSNGSTK---DRKLLLTAQQMLQDSKTKIDIIRMQLRRALQAD 73 (81)
T ss_dssp HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHSSSC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHccCCcc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46666766662 2222 2 7888888865432 245677888888888888888888888777654
No 8
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=16.32 E-value=4.1e+02 Score=24.85 Aligned_cols=103 Identities=20% Similarity=0.297 Sum_probs=48.8
Q ss_pred CCcchhhhHHHHhhHHHhhhhcchhhHHHHHHHhhhhhhhhhhhhhhhHhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 007324 245 PPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYK 324 (608)
Q Consensus 245 sp~K~qdql~ea~~ll~~~~~~g~ske~rL~rvc~~ls~rL~~lr~EN~QLEeLLr~E~~~~~S~~~r~k~lQ~ELs~ar 324 (608)
=|-|-=|=||+|-.-++-...+-......|-|-..++..+.+.++.++.. .-......+...++.++++++..+
T Consensus 229 ~PdKAidlld~a~a~~~i~~~s~P~el~~ler~I~qLe~E~~aL~ke~d~------~s~~rl~~le~el~~lee~~~~L~ 302 (387)
T d1qvra2 229 LPDKAIDLIDEAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDP------DSQERLKAIEAEIAKLTEEIAKLR 302 (387)
T ss_dssp THHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHSSCSSH------HHHSCTHHHHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHHhccch------HHHHHHhhhhhhhhHHHHHHHHHH
Confidence 45666667777666555443333333344555555555555555444320 001113444444555555444432
Q ss_pred hhhhhh--hhhHHHHHhcccchhHHHHHHHHHHH
Q 007324 325 SEVTKV--ESNLAEALAAKNSEIETLVSSIDALK 356 (608)
Q Consensus 325 ~~v~k~--EsdlteALAAKdSqLavL~vrldead 356 (608)
++| +..+.+.+..-..+|..++..++.+.
T Consensus 303 ---~~w~~ek~~l~~i~~Lk~~Le~lr~~le~A~ 333 (387)
T d1qvra2 303 ---AEWEREREILRKLREAQHRLDEVRREIELAE 333 (387)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234 34444555555555555555554443
No 9
>d1l2pa_ f.23.21.1 (A:) F1F0 ATP synthase subunit B, membrane domain {Escherichia coli [TaxId: 562]}
Probab=14.64 E-value=1.5e+02 Score=21.86 Aligned_cols=55 Identities=16% Similarity=0.206 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhccCCCchhHHHHHHH--HHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHH
Q 007324 468 ELQDMEARLKRGQKKSPEEANQAIQM--QAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEM 528 (608)
Q Consensus 468 ELqDyk~ka~Ril~gs~e~Agqv~ql--e~~reev~~areq~~~~e~a~qe~~ae~q~~e~El 528 (608)
+|.+.+..|..|..-.-..+++|+.= ...+.|.++ -...+..++++++..++.+|
T Consensus 3 ~L~eAK~eAa~Ii~qA~~ra~qIveeak~~A~~Ea~r------I~~~A~~eIe~E~~~A~~eL 59 (61)
T d1l2pa_ 3 QLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTK------IVAQAQAEIEAERKRAREEL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHh
Confidence 57778888888876666666766632 122222222 23335555656666665554
No 10
>d1o3xa_ a.7.8.1 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.03 E-value=3.7e+02 Score=21.26 Aligned_cols=95 Identities=19% Similarity=0.334 Sum_probs=48.0
Q ss_pred HhhHHHhhhhcchhhHHHHHHHhhhhhhhhhhhhhhhHhHHHHHHHHH----------HHhHHHHHHHHHHHHHHhhhhh
Q 007324 256 AQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAER----------ELSRSYEARIKQLEQELSVYKS 325 (608)
Q Consensus 256 a~~ll~~~~~~g~ske~rL~rvc~~ls~rL~~lr~EN~QLEeLLr~E~----------~~~~S~~~r~k~lQ~ELs~ar~ 325 (608)
|+.|+|+.+.--+.+-...++. .+.|+..+.--.-|-|||.+.. +.+..|-.+.+..|.-+-..=.
T Consensus 2 AN~LiK~m~~e~e~~~e~~~k~----~~eLe~v~~n~~lL~eML~~~~~~~~~~~~~~ell~eL~~~c~~~qp~i~~li~ 77 (112)
T d1o3xa_ 2 ANKLIKEMVQEDQKRMEKISKR----VNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLAS 77 (112)
T ss_dssp CCSSTHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHTTTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7889999986544444444443 3466666666666777887532 2334444444444443322211
Q ss_pred hhhhhhhhHHHHHhcccchhHHHHHHHHHH
Q 007324 326 EVTKVESNLAEALAAKNSEIETLVSSIDAL 355 (608)
Q Consensus 326 ~v~k~EsdlteALAAKdSqLavL~vrldea 355 (608)
.+.-=|+-|.+.|.+ |-.|-.+-.+|+..
T Consensus 78 ~~~ddee~l~elL~~-ND~L~~vl~rY~~~ 106 (112)
T d1o3xa_ 78 DTEDNDEALAEILQA-NDNLTQVINLYKQL 106 (112)
T ss_dssp TCTTCHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 101002334555444 44555555566543
Done!