Query 007325
Match_columns 608
No_of_seqs 474 out of 2988
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 22:02:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007325.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007325hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0465 Mitochondrial elongati 100.0 7E-113 1E-117 892.8 36.3 519 83-605 32-553 (721)
2 COG0480 FusA Translation elong 100.0 2E-110 5E-115 928.6 57.4 517 87-606 7-524 (697)
3 PRK00007 elongation factor G; 100.0 5E-100 1E-104 866.5 60.5 522 85-606 5-526 (693)
4 PRK12739 elongation factor G; 100.0 5.6E-99 1E-103 858.4 59.5 520 86-606 4-523 (691)
5 TIGR00484 EF-G translation elo 100.0 8.1E-98 2E-102 849.5 61.6 519 85-606 5-523 (689)
6 PRK13351 elongation factor G; 100.0 2.8E-95 6E-100 830.7 62.1 519 86-606 4-522 (687)
7 PRK12740 elongation factor G; 100.0 3.7E-89 8E-94 779.2 59.3 505 96-606 1-505 (668)
8 PRK00741 prfC peptide chain re 100.0 1.5E-83 3.3E-88 704.2 49.8 450 87-570 7-474 (526)
9 PLN00116 translation elongatio 100.0 1.4E-83 3.1E-88 743.0 44.6 499 85-600 14-597 (843)
10 PTZ00416 elongation factor 2; 100.0 3.5E-83 7.6E-88 738.2 44.8 493 86-600 15-590 (836)
11 KOG0464 Elongation factor G [T 100.0 7E-86 1.5E-90 659.8 17.5 498 86-596 33-567 (753)
12 TIGR00503 prfC peptide chain r 100.0 1.6E-79 3.5E-84 672.6 48.7 449 86-567 7-472 (527)
13 TIGR00490 aEF-2 translation el 100.0 1.4E-76 3E-81 676.1 43.9 461 85-600 14-497 (720)
14 PRK07560 elongation factor EF- 100.0 2.3E-75 5E-80 667.8 43.8 438 86-601 16-498 (731)
15 TIGR01394 TypA_BipA GTP-bindin 100.0 1.2E-67 2.6E-72 585.8 43.3 367 90-568 1-389 (594)
16 PRK10218 GTP-binding protein; 100.0 4.7E-67 1E-71 579.8 45.3 368 88-566 3-392 (607)
17 KOG0469 Elongation factor 2 [T 100.0 1.6E-68 3.5E-73 545.3 18.6 491 86-600 15-596 (842)
18 COG4108 PrfC Peptide chain rel 100.0 2.7E-66 5.9E-71 525.6 32.3 452 88-567 10-473 (528)
19 PRK05433 GTP-binding protein L 100.0 3.5E-65 7.6E-70 568.1 43.6 363 87-570 4-382 (600)
20 TIGR01393 lepA GTP-binding pro 100.0 4.3E-64 9.4E-69 558.9 44.8 361 89-570 2-378 (595)
21 COG1217 TypA Predicted membran 100.0 5.9E-60 1.3E-64 481.5 36.4 367 88-565 3-391 (603)
22 KOG0462 Elongation factor-type 100.0 1.1E-59 2.4E-64 488.5 29.1 367 84-570 54-434 (650)
23 COG0481 LepA Membrane GTPase L 100.0 3.3E-58 7.1E-63 470.1 32.2 365 85-570 4-384 (603)
24 cd01886 EF-G Elongation factor 100.0 6.3E-54 1.4E-58 434.9 32.2 270 92-362 1-270 (270)
25 KOG0468 U5 snRNP-specific prot 100.0 1.8E-52 3.9E-57 439.6 32.4 488 85-600 123-694 (971)
26 KOG0467 Translation elongation 100.0 1.8E-53 3.9E-58 455.3 22.6 468 84-572 3-554 (887)
27 cd04169 RF3 RF3 subfamily. Pe 100.0 1.2E-49 2.6E-54 403.4 30.0 263 89-362 1-267 (267)
28 cd04170 EF-G_bact Elongation f 100.0 1.7E-47 3.8E-52 390.0 31.4 268 92-362 1-268 (268)
29 cd04168 TetM_like Tet(M)-like 100.0 4.9E-46 1.1E-50 370.9 27.7 237 92-362 1-237 (237)
30 PRK05306 infB translation init 100.0 4.5E-37 9.7E-42 347.7 34.3 379 87-600 287-724 (787)
31 PRK12736 elongation factor Tu; 100.0 2.9E-36 6.2E-41 322.9 31.0 272 88-474 10-297 (394)
32 CHL00071 tufA elongation facto 100.0 3.5E-36 7.6E-41 323.7 31.6 274 87-474 9-307 (409)
33 PLN03126 Elongation factor Tu; 100.0 3.5E-35 7.6E-40 318.6 34.5 273 86-474 77-376 (478)
34 PTZ00141 elongation factor 1- 100.0 3.3E-35 7.1E-40 318.0 30.2 272 88-474 5-318 (446)
35 TIGR00485 EF-Tu translation el 100.0 4E-35 8.7E-40 314.4 30.5 273 87-474 9-297 (394)
36 PLN00043 elongation factor 1-a 100.0 5E-35 1.1E-39 316.3 29.1 272 88-474 5-318 (447)
37 TIGR00487 IF-2 translation ini 100.0 2.9E-34 6.3E-39 318.3 34.8 304 88-522 85-419 (587)
38 PRK12735 elongation factor Tu; 100.0 1.3E-34 2.8E-39 310.3 30.0 272 88-474 10-299 (396)
39 PRK00049 elongation factor Tu; 100.0 2.1E-34 4.6E-39 308.4 30.1 273 88-474 10-299 (396)
40 PRK12317 elongation factor 1-a 100.0 1.6E-34 3.5E-39 313.3 29.6 273 88-475 4-311 (425)
41 PLN03127 Elongation factor Tu; 100.0 9E-34 1.9E-38 306.3 31.7 274 86-474 57-350 (447)
42 TIGR02034 CysN sulfate adenyly 100.0 7.5E-34 1.6E-38 305.2 27.4 270 92-475 2-301 (406)
43 CHL00189 infB translation init 100.0 1.8E-33 3.8E-38 315.7 29.6 298 87-515 241-569 (742)
44 TIGR00483 EF-1_alpha translati 100.0 4.6E-33 9.9E-38 301.9 29.2 276 88-475 5-313 (426)
45 PRK05124 cysN sulfate adenylyl 100.0 6.6E-33 1.4E-37 302.2 28.4 276 88-476 25-330 (474)
46 COG5256 TEF1 Translation elong 100.0 1E-32 2.2E-37 281.9 27.6 274 88-479 5-321 (428)
47 PTZ00327 eukaryotic translatio 100.0 2.2E-31 4.7E-36 287.0 27.7 255 90-475 34-352 (460)
48 KOG0460 Mitochondrial translat 100.0 1E-32 2.2E-37 272.5 14.9 271 90-476 54-343 (449)
49 COG0050 TufB GTPases - transla 100.0 9.7E-32 2.1E-36 261.0 20.5 274 88-475 10-298 (394)
50 PRK10512 selenocysteinyl-tRNA- 100.0 4.6E-31 1E-35 295.0 28.0 251 92-474 2-260 (614)
51 PRK05506 bifunctional sulfate 100.0 1.5E-30 3.2E-35 294.8 28.2 275 88-476 22-326 (632)
52 PRK04000 translation initiatio 100.0 2.6E-30 5.6E-35 277.8 28.5 256 90-476 9-320 (411)
53 PF00009 GTP_EFTU: Elongation 100.0 9.9E-32 2.2E-36 259.6 15.8 145 88-232 1-147 (188)
54 TIGR03680 eif2g_arch translati 100.0 9.4E-30 2E-34 273.7 28.9 255 90-475 4-314 (406)
55 TIGR00475 selB selenocysteine- 100.0 1.9E-29 4E-34 281.4 28.1 253 92-473 2-260 (581)
56 COG0532 InfB Translation initi 100.0 2.2E-28 4.8E-33 258.5 26.8 301 89-520 4-338 (509)
57 KOG1145 Mitochondrial translat 100.0 2.4E-28 5.2E-33 254.8 25.5 302 88-520 151-503 (683)
58 PRK04004 translation initiatio 100.0 4.9E-28 1.1E-32 269.4 28.2 342 89-511 5-376 (586)
59 cd01885 EF2 EF2 (for archaea a 100.0 3.5E-28 7.7E-33 239.3 21.2 129 91-221 1-139 (222)
60 COG3276 SelB Selenocysteine-sp 100.0 6.2E-28 1.3E-32 248.7 21.2 249 92-474 2-256 (447)
61 cd01884 EF_Tu EF-Tu subfamily. 100.0 2.8E-27 6.2E-32 229.0 19.6 127 91-220 3-131 (195)
62 COG5257 GCD11 Translation init 100.0 1.1E-26 2.5E-31 228.5 23.5 328 90-561 10-386 (415)
63 TIGR00491 aIF-2 translation in 100.0 3.4E-26 7.3E-31 253.5 29.3 330 89-511 3-374 (590)
64 KOG0458 Elongation factor 1 al 100.0 9.5E-27 2.1E-31 245.9 23.4 276 84-472 171-488 (603)
65 COG5258 GTPBP1 GTPase [General 99.9 5.3E-26 1.1E-30 228.2 22.3 284 87-473 114-436 (527)
66 COG2895 CysN GTPases - Sulfate 99.9 4.8E-26 1E-30 227.0 21.7 313 89-506 5-337 (431)
67 cd01883 EF1_alpha Eukaryotic e 99.9 1.9E-25 4.2E-30 220.9 15.6 130 92-221 1-151 (219)
68 cd01890 LepA LepA subfamily. 99.9 1.4E-24 3.1E-29 207.3 20.8 130 91-223 1-135 (179)
69 cd04166 CysN_ATPS CysN_ATPS su 99.9 5.8E-25 1.3E-29 215.7 16.3 131 92-222 1-145 (208)
70 cd01891 TypA_BipA TypA (tyrosi 99.9 3.2E-24 7E-29 208.1 20.2 143 89-233 1-143 (194)
71 PRK14845 translation initiatio 99.9 7.6E-23 1.7E-27 236.6 29.1 317 103-511 474-832 (1049)
72 KOG0461 Selenocysteine-specifi 99.9 1.1E-23 2.4E-28 208.6 19.0 247 91-458 8-267 (522)
73 cd04167 Snu114p Snu114p subfam 99.9 1.8E-23 3.9E-28 206.0 18.9 130 91-220 1-136 (213)
74 cd01888 eIF2_gamma eIF2-gamma 99.9 2.5E-23 5.3E-28 203.4 16.1 116 91-221 1-151 (203)
75 cd01889 SelB_euk SelB subfamil 99.9 7.3E-23 1.6E-27 198.3 18.8 119 92-221 2-134 (192)
76 cd04165 GTPBP1_like GTPBP1-lik 99.9 4.8E-22 1E-26 196.6 17.1 141 92-236 1-168 (224)
77 cd00881 GTP_translation_factor 99.9 2.1E-21 4.5E-26 186.4 21.0 142 92-235 1-143 (189)
78 PF14492 EFG_II: Elongation Fa 99.9 6.9E-22 1.5E-26 160.3 8.9 75 484-558 1-75 (75)
79 KOG0459 Polypeptide release fa 99.8 4.6E-21 1E-25 194.1 12.9 292 85-478 74-394 (501)
80 cd04171 SelB SelB subfamily. 99.8 3.2E-20 6.9E-25 173.9 16.8 115 92-221 2-118 (164)
81 COG1160 Predicted GTPases [Gen 99.8 4.3E-20 9.3E-25 192.8 18.6 113 91-220 4-125 (444)
82 PRK09554 feoB ferrous iron tra 99.8 2.2E-20 4.9E-25 213.4 16.9 239 91-359 4-263 (772)
83 COG2262 HflX GTPases [General 99.8 6.3E-21 1.4E-25 196.0 10.2 180 15-221 103-318 (411)
84 PF02421 FeoB_N: Ferrous iron 99.8 6.2E-20 1.3E-24 169.5 13.7 109 92-220 2-118 (156)
85 KOG1144 Translation initiation 99.8 1.9E-19 4.2E-24 193.1 18.1 240 89-426 474-736 (1064)
86 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 3.8E-19 8.2E-24 167.6 18.1 115 91-223 1-118 (168)
87 PRK11058 GTPase HflX; Provisio 99.8 2.7E-20 5.9E-25 200.1 11.2 186 15-221 108-323 (426)
88 COG1159 Era GTPase [General fu 99.8 3.1E-19 6.8E-24 177.0 16.9 116 90-222 6-129 (298)
89 TIGR03156 GTP_HflX GTP-binding 99.8 4.1E-20 9E-25 194.4 10.0 186 15-221 100-315 (351)
90 cd03690 Tet_II Tet_II: This su 99.8 2.5E-19 5.4E-24 149.5 11.1 85 387-472 1-85 (85)
91 KOG1143 Predicted translation 99.8 2.3E-18 5E-23 172.6 16.0 285 91-474 168-491 (591)
92 TIGR00436 era GTP-binding prot 99.8 4.2E-18 9.2E-23 173.8 18.0 111 92-220 2-120 (270)
93 cd04160 Arfrp1 Arfrp1 subfamil 99.8 3.9E-18 8.5E-23 160.7 15.5 117 92-222 1-122 (167)
94 PRK15494 era GTPase Era; Provi 99.8 6.4E-18 1.4E-22 177.5 18.6 116 89-221 51-174 (339)
95 COG1160 Predicted GTPases [Gen 99.8 5.6E-18 1.2E-22 177.1 17.8 117 89-222 177-304 (444)
96 cd04092 mtEFG2_II_like mtEFG2_ 99.8 1.8E-18 3.8E-23 143.9 10.5 83 390-472 1-83 (83)
97 cd01894 EngA1 EngA1 subfamily. 99.8 8.3E-18 1.8E-22 156.2 16.3 112 94-222 1-120 (157)
98 PRK00093 GTP-binding protein D 99.8 1.7E-17 3.8E-22 181.0 19.1 115 89-220 172-297 (435)
99 TIGR03594 GTPase_EngA ribosome 99.8 1.4E-17 2.9E-22 181.6 17.8 115 89-220 171-296 (429)
100 cd04154 Arl2 Arl2 subfamily. 99.8 1.8E-17 4E-22 157.5 16.1 113 89-222 13-130 (173)
101 KOG0463 GTP-binding protein GP 99.8 6.2E-18 1.3E-22 169.6 13.2 283 91-476 134-458 (641)
102 cd03689 RF3_II RF3_II: this su 99.8 4.9E-18 1.1E-22 141.4 10.4 81 392-472 1-84 (85)
103 cd01895 EngA2 EngA2 subfamily. 99.8 4.7E-17 1E-21 153.4 18.5 116 90-222 2-128 (174)
104 cd04157 Arl6 Arl6 subfamily. 99.8 2.7E-17 5.9E-22 153.9 16.5 112 92-222 1-119 (162)
105 cd04151 Arl1 Arl1 subfamily. 99.7 3.2E-17 6.9E-22 153.4 15.7 110 92-222 1-115 (158)
106 cd04088 EFG_mtEFG_II EFG_mtEFG 99.7 9.5E-18 2.1E-22 139.6 10.5 83 390-472 1-83 (83)
107 PRK03003 GTP-binding protein D 99.7 3.6E-17 7.7E-22 179.8 17.9 116 89-221 210-336 (472)
108 PRK03003 GTP-binding protein D 99.7 4.1E-17 9E-22 179.2 18.1 117 88-221 36-160 (472)
109 cd01864 Rab19 Rab19 subfamily. 99.7 5.1E-17 1.1E-21 153.0 15.7 114 90-221 3-122 (165)
110 cd00878 Arf_Arl Arf (ADP-ribos 99.7 5.2E-17 1.1E-21 151.7 15.5 110 92-222 1-115 (158)
111 cd04091 mtEFG1_II_like mtEFG1_ 99.7 1.7E-17 3.6E-22 137.3 10.4 81 390-472 1-81 (81)
112 cd01898 Obg Obg subfamily. Th 99.7 8.9E-17 1.9E-21 151.8 16.5 112 92-221 2-128 (170)
113 cd01897 NOG NOG1 is a nucleola 99.7 1.1E-16 2.3E-21 151.1 16.9 113 91-221 1-127 (168)
114 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 1.2E-16 2.5E-21 152.3 17.1 111 90-221 15-130 (174)
115 PRK00089 era GTPase Era; Revie 99.7 2.2E-16 4.7E-21 163.2 19.5 114 90-220 5-126 (292)
116 KOG0466 Translation initiation 99.7 1E-17 2.2E-22 164.1 8.8 247 90-463 38-342 (466)
117 TIGR03594 GTPase_EngA ribosome 99.7 5.9E-17 1.3E-21 176.6 15.8 113 92-221 1-121 (429)
118 COG0218 Predicted GTPase [Gene 99.7 1.7E-16 3.7E-21 149.7 16.2 135 83-236 17-165 (200)
119 cd04145 M_R_Ras_like M-Ras/R-R 99.7 2.5E-16 5.5E-21 147.7 17.4 112 91-221 3-121 (164)
120 PRK12299 obgE GTPase CgtA; Rev 99.7 9.2E-17 2E-21 167.8 15.8 133 71-221 139-285 (335)
121 cd04149 Arf6 Arf6 subfamily. 99.7 1.7E-16 3.7E-21 150.3 16.2 110 91-221 10-124 (168)
122 cd00879 Sar1 Sar1 subfamily. 99.7 1.3E-16 2.8E-21 153.9 15.5 112 90-222 19-135 (190)
123 cd01879 FeoB Ferrous iron tran 99.7 1.1E-16 2.5E-21 148.9 14.4 108 95-222 1-116 (158)
124 cd04124 RabL2 RabL2 subfamily. 99.7 2.1E-16 4.5E-21 148.5 16.0 113 92-220 2-117 (161)
125 PRK09518 bifunctional cytidyla 99.7 1E-16 2.3E-21 184.2 16.7 117 88-221 448-575 (712)
126 TIGR02729 Obg_CgtA Obg family 99.7 1.6E-16 3.4E-21 165.9 16.5 131 73-221 140-287 (329)
127 smart00178 SAR Sar1p-like memb 99.7 1.9E-16 4.2E-21 152.3 15.9 112 89-221 16-132 (184)
128 PRK15467 ethanolamine utilizat 99.7 1.2E-16 2.7E-21 149.7 13.8 101 91-222 2-106 (158)
129 PRK04213 GTP-binding protein; 99.7 2.9E-16 6.3E-21 153.0 16.8 112 89-222 8-145 (201)
130 PRK09518 bifunctional cytidyla 99.7 2.7E-16 5.9E-21 180.7 19.2 119 85-220 270-396 (712)
131 PRK12298 obgE GTPase CgtA; Rev 99.7 1.4E-16 3.1E-21 169.5 15.7 120 84-221 153-289 (390)
132 cd04158 ARD1 ARD1 subfamily. 99.7 3E-16 6.5E-21 148.7 15.9 109 92-221 1-114 (169)
133 cd04150 Arf1_5_like Arf1-Arf5- 99.7 3.5E-16 7.6E-21 146.8 15.9 109 92-221 2-115 (159)
134 smart00177 ARF ARF-like small 99.7 3.7E-16 7.9E-21 149.1 16.3 112 90-222 13-129 (175)
135 cd04113 Rab4 Rab4 subfamily. 99.7 3.5E-16 7.6E-21 146.5 15.7 114 92-221 2-119 (161)
136 cd01878 HflX HflX subfamily. 99.7 4.5E-16 9.8E-21 152.1 16.6 136 69-222 20-168 (204)
137 PRK12296 obgE GTPase CgtA; Rev 99.7 2.6E-16 5.7E-21 170.3 16.1 135 69-221 138-298 (500)
138 PLN00223 ADP-ribosylation fact 99.7 7.8E-16 1.7E-20 147.7 17.7 112 90-222 17-133 (181)
139 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.7 4.6E-16 1E-20 149.5 16.0 112 91-221 4-123 (183)
140 cd04163 Era Era subfamily. Er 99.7 1.1E-15 2.5E-20 142.6 18.2 114 90-220 3-124 (168)
141 smart00173 RAS Ras subfamily o 99.7 5.1E-16 1.1E-20 145.8 15.8 111 92-221 2-119 (164)
142 PRK12297 obgE GTPase CgtA; Rev 99.7 4.2E-16 9.1E-21 166.8 16.9 120 83-220 151-287 (424)
143 cd04106 Rab23_lke Rab23-like s 99.7 9.4E-16 2E-20 143.6 16.9 112 92-221 2-120 (162)
144 cd01860 Rab5_related Rab5-rela 99.7 8.3E-16 1.8E-20 144.1 16.4 114 92-221 3-120 (163)
145 PTZ00133 ADP-ribosylation fact 99.7 8E-16 1.7E-20 147.7 16.3 110 91-221 18-132 (182)
146 cd04159 Arl10_like Arl10-like 99.7 1.1E-15 2.4E-20 141.7 16.7 110 93-222 2-116 (159)
147 cd04114 Rab30 Rab30 subfamily. 99.7 5.4E-16 1.2E-20 146.4 14.8 116 88-221 5-126 (169)
148 cd03691 BipA_TypA_II BipA_TypA 99.7 2.1E-16 4.7E-21 132.3 10.7 83 390-472 1-86 (86)
149 cd03699 lepA_II lepA_II: This 99.7 1.9E-16 4.2E-21 132.5 10.2 82 390-472 1-86 (86)
150 TIGR03598 GTPase_YsxC ribosome 99.7 5E-16 1.1E-20 148.6 14.6 120 83-221 11-143 (179)
151 PRK00093 GTP-binding protein D 99.7 7.8E-16 1.7E-20 168.1 17.9 113 91-220 2-122 (435)
152 cd04155 Arl3 Arl3 subfamily. 99.7 7.3E-16 1.6E-20 146.2 15.3 114 88-222 12-130 (173)
153 cd04164 trmE TrmE (MnmE, ThdF, 99.7 8.4E-16 1.8E-20 142.5 15.3 112 92-222 3-122 (157)
154 cd04138 H_N_K_Ras_like H-Ras/N 99.7 1.3E-15 2.8E-20 142.1 16.6 111 92-221 3-120 (162)
155 KOG1423 Ras-like GTPase ERA [C 99.7 5.7E-16 1.2E-20 152.6 14.3 122 83-221 65-199 (379)
156 cd01865 Rab3 Rab3 subfamily. 99.7 1E-15 2.3E-20 144.2 15.7 115 91-221 2-120 (165)
157 cd01861 Rab6 Rab6 subfamily. 99.7 2.3E-15 4.9E-20 140.8 17.6 111 92-220 2-118 (161)
158 smart00175 RAB Rab subfamily o 99.7 1.6E-15 3.5E-20 142.0 16.6 112 92-221 2-119 (164)
159 COG2229 Predicted GTPase [Gene 99.7 1.9E-15 4.1E-20 139.4 16.4 126 90-223 10-137 (187)
160 cd04156 ARLTS1 ARLTS1 subfamil 99.7 1.1E-15 2.5E-20 142.8 15.2 109 92-221 1-115 (160)
161 PTZ00369 Ras-like protein; Pro 99.7 1.1E-15 2.5E-20 147.5 15.6 114 91-221 6-124 (189)
162 cd04107 Rab32_Rab38 Rab38/Rab3 99.7 1.8E-15 3.9E-20 147.6 17.0 111 92-220 2-123 (201)
163 cd04136 Rap_like Rap-like subf 99.7 2.1E-15 4.6E-20 141.2 16.9 111 91-221 2-120 (163)
164 cd01862 Rab7 Rab7 subfamily. 99.7 1.5E-15 3.3E-20 143.5 15.9 112 92-221 2-123 (172)
165 cd04175 Rap1 Rap1 subgroup. T 99.7 2.8E-15 6.1E-20 140.9 17.6 111 92-221 3-120 (164)
166 cd01866 Rab2 Rab2 subfamily. 99.7 1.9E-15 4.2E-20 142.9 16.5 114 91-220 5-122 (168)
167 cd00877 Ran Ran (Ras-related n 99.7 1.3E-15 2.8E-20 143.9 15.0 113 92-220 2-117 (166)
168 cd01863 Rab18 Rab18 subfamily. 99.7 1.6E-15 3.5E-20 141.9 15.4 113 92-220 2-119 (161)
169 cd04139 RalA_RalB RalA/RalB su 99.7 1.5E-15 3.3E-20 142.1 15.1 113 92-221 2-119 (164)
170 cd04119 RJL RJL (RabJ-Like) su 99.7 2.5E-15 5.4E-20 141.1 16.3 113 92-220 2-123 (168)
171 cd04120 Rab12 Rab12 subfamily. 99.7 3.4E-15 7.4E-20 145.5 17.7 111 92-220 2-118 (202)
172 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.7 2.7E-15 5.8E-20 141.3 16.3 113 91-221 3-121 (166)
173 cd04122 Rab14 Rab14 subfamily. 99.7 2.6E-15 5.7E-20 141.5 16.2 115 91-221 3-121 (166)
174 PRK00454 engB GTP-binding prot 99.7 2.9E-15 6.2E-20 145.1 16.8 120 83-221 17-149 (196)
175 cd04161 Arl2l1_Arl13_like Arl2 99.7 2.5E-15 5.4E-20 142.2 15.9 110 92-222 1-115 (167)
176 PRK05291 trmE tRNA modificatio 99.7 1E-15 2.2E-20 166.7 15.1 113 90-221 215-335 (449)
177 cd04147 Ras_dva Ras-dva subfam 99.7 1.3E-15 2.7E-20 148.3 14.1 111 92-221 1-118 (198)
178 cd04162 Arl9_Arfrp2_like Arl9/ 99.7 3.8E-15 8.3E-20 140.5 16.6 110 93-222 2-114 (164)
179 TIGR00231 small_GTP small GTP- 99.7 1E-15 2.2E-20 141.1 12.4 113 91-222 2-123 (161)
180 cd01868 Rab11_like Rab11-like. 99.6 5.5E-15 1.2E-19 139.0 17.6 113 91-221 4-122 (165)
181 cd04123 Rab21 Rab21 subfamily. 99.6 4.2E-15 9.1E-20 138.7 16.5 112 92-221 2-119 (162)
182 cd04140 ARHI_like ARHI subfami 99.6 2.1E-15 4.5E-20 142.2 14.5 114 91-221 2-122 (165)
183 cd04127 Rab27A Rab27a subfamil 99.6 4.2E-15 9.1E-20 141.9 16.4 114 90-221 4-134 (180)
184 cd01867 Rab8_Rab10_Rab13_like 99.6 4.9E-15 1.1E-19 139.9 16.7 114 90-221 3-122 (167)
185 cd00880 Era_like Era (E. coli 99.6 5.8E-15 1.3E-19 136.2 16.5 111 95-222 1-119 (163)
186 cd04177 RSR1 RSR1 subgroup. R 99.6 6.3E-15 1.4E-19 139.3 17.0 110 92-221 3-120 (168)
187 COG0370 FeoB Fe2+ transport sy 99.6 3.1E-15 6.6E-20 163.3 16.7 110 91-220 4-121 (653)
188 cd01893 Miro1 Miro1 subfamily. 99.6 5.4E-15 1.2E-19 139.5 16.4 113 92-222 2-118 (166)
189 PLN03118 Rab family protein; P 99.6 7.7E-15 1.7E-19 144.3 17.8 113 90-221 14-134 (211)
190 cd04110 Rab35 Rab35 subfamily. 99.6 6.8E-15 1.5E-19 143.3 17.2 114 90-221 6-124 (199)
191 cd04115 Rab33B_Rab33A Rab33B/R 99.6 3.1E-15 6.8E-20 141.7 14.4 114 90-221 2-123 (170)
192 TIGR02528 EutP ethanolamine ut 99.6 1.8E-15 3.9E-20 138.8 12.3 97 92-221 2-102 (142)
193 cd04126 Rab20 Rab20 subfamily. 99.6 8.2E-15 1.8E-19 144.6 17.5 109 92-221 2-114 (220)
194 cd01882 BMS1 Bms1. Bms1 is an 99.6 6.3E-16 1.4E-20 153.4 9.5 156 89-269 38-209 (225)
195 cd04112 Rab26 Rab26 subfamily. 99.6 4.5E-15 9.8E-20 143.6 15.3 114 92-220 2-119 (191)
196 cd00154 Rab Rab family. Rab G 99.6 7.3E-15 1.6E-19 135.9 15.9 113 92-220 2-118 (159)
197 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.6 8.2E-15 1.8E-19 139.3 16.4 110 91-220 3-120 (172)
198 cd04176 Rap2 Rap2 subgroup. T 99.6 1E-14 2.2E-19 136.9 16.7 110 92-220 3-119 (163)
199 cd04142 RRP22 RRP22 subfamily. 99.6 7.4E-15 1.6E-19 142.9 16.1 112 92-221 2-130 (198)
200 cd04144 Ras2 Ras2 subfamily. 99.6 1E-14 2.2E-19 141.0 16.9 109 92-220 1-119 (190)
201 cd04137 RheB Rheb (Ras Homolog 99.6 1E-14 2.2E-19 139.4 16.6 111 91-220 2-119 (180)
202 cd01881 Obg_like The Obg-like 99.6 5.8E-15 1.3E-19 139.9 14.8 109 95-221 1-134 (176)
203 cd04116 Rab9 Rab9 subfamily. 99.6 1.1E-14 2.4E-19 137.6 16.6 113 90-220 5-127 (170)
204 TIGR00450 mnmE_trmE_thdF tRNA 99.6 8.4E-15 1.8E-19 158.7 17.1 115 89-221 202-324 (442)
205 cd00876 Ras Ras family. The R 99.6 1.3E-14 2.9E-19 135.0 16.2 111 92-221 1-118 (160)
206 cd03700 eEF2_snRNP_like_II EF2 99.6 2E-15 4.2E-20 128.3 9.6 82 390-471 1-92 (93)
207 cd04109 Rab28 Rab28 subfamily. 99.6 1.4E-14 3E-19 142.9 17.2 111 92-220 2-122 (215)
208 cd04146 RERG_RasL11_like RERG/ 99.6 7.9E-15 1.7E-19 138.1 14.8 112 92-220 1-119 (165)
209 PF00025 Arf: ADP-ribosylation 99.6 5.6E-15 1.2E-19 140.9 13.3 114 88-222 12-130 (175)
210 cd01874 Cdc42 Cdc42 subfamily. 99.6 2.9E-14 6.3E-19 136.0 18.1 111 91-221 2-119 (175)
211 PLN03110 Rab GTPase; Provision 99.6 7.1E-15 1.5E-19 145.1 14.1 115 88-220 10-130 (216)
212 cd04101 RabL4 RabL4 (Rab-like4 99.6 1.8E-14 3.9E-19 135.2 16.2 116 92-221 2-121 (164)
213 cd04108 Rab36_Rab34 Rab34/Rab3 99.6 1.2E-14 2.5E-19 138.0 15.1 112 92-221 2-120 (170)
214 cd04135 Tc10 TC10 subfamily. 99.6 1.5E-14 3.2E-19 137.2 15.6 111 92-222 2-119 (174)
215 cd04121 Rab40 Rab40 subfamily. 99.6 2.9E-14 6.3E-19 137.6 17.7 114 89-220 5-123 (189)
216 cd04090 eEF2_II_snRNP Loc2 eEF 99.6 4.4E-15 9.6E-20 126.4 10.3 81 390-470 1-91 (94)
217 COG0486 ThdF Predicted GTPase 99.6 8.2E-15 1.8E-19 153.9 14.5 118 87-222 214-339 (454)
218 PLN03071 GTP-binding nuclear p 99.6 1.7E-14 3.8E-19 142.6 16.2 116 89-220 12-130 (219)
219 KOG1489 Predicted GTP-binding 99.6 6.8E-15 1.5E-19 146.0 12.9 126 78-221 184-326 (366)
220 cd04143 Rhes_like Rhes_like su 99.6 3.1E-14 6.7E-19 143.1 16.8 109 92-220 2-126 (247)
221 smart00176 RAN Ran (Ras-relate 99.6 2.1E-14 4.6E-19 139.7 14.6 109 96-220 1-112 (200)
222 cd04118 Rab24 Rab24 subfamily. 99.6 3.7E-14 8E-19 137.2 16.2 113 92-221 2-119 (193)
223 cd04132 Rho4_like Rho4-like su 99.6 3.9E-14 8.5E-19 136.2 16.3 110 92-221 2-119 (187)
224 cd04134 Rho3 Rho3 subfamily. 99.6 3.9E-14 8.5E-19 136.8 16.0 115 91-222 1-119 (189)
225 cd00157 Rho Rho (Ras homology) 99.6 2.1E-14 4.5E-19 135.6 13.6 114 92-222 2-119 (171)
226 TIGR00437 feoB ferrous iron tr 99.6 2.1E-14 4.7E-19 160.9 15.6 104 97-220 1-112 (591)
227 cd04125 RabA_like RabA-like su 99.6 5.1E-14 1.1E-18 135.7 16.0 113 92-220 2-118 (188)
228 cd01892 Miro2 Miro2 subfamily. 99.6 3.9E-14 8.6E-19 134.2 14.6 116 89-221 3-122 (169)
229 cd01875 RhoG RhoG subfamily. 99.6 5.4E-14 1.2E-18 136.1 15.6 111 91-221 4-121 (191)
230 cd04128 Spg1 Spg1p. Spg1p (se 99.6 5.8E-14 1.2E-18 134.8 15.2 111 92-221 2-118 (182)
231 PLN03108 Rab family protein; P 99.6 1.1E-13 2.3E-18 136.1 17.3 116 90-221 6-125 (210)
232 smart00174 RHO Rho (Ras homolo 99.6 6E-14 1.3E-18 133.1 15.0 110 93-221 1-116 (174)
233 cd01871 Rac1_like Rac1-like su 99.6 1.1E-13 2.4E-18 131.9 16.4 114 91-221 2-119 (174)
234 cd04111 Rab39 Rab39 subfamily. 99.6 7.7E-14 1.7E-18 137.2 15.8 113 91-221 3-123 (211)
235 cd04117 Rab15 Rab15 subfamily. 99.6 1.7E-13 3.8E-18 128.6 17.5 112 92-221 2-119 (161)
236 cd01870 RhoA_like RhoA-like su 99.6 6E-14 1.3E-18 133.2 14.4 111 91-221 2-119 (175)
237 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.6 2E-13 4.4E-18 126.5 17.2 118 89-222 21-143 (221)
238 cd01876 YihA_EngB The YihA (En 99.5 1.5E-13 3.2E-18 128.6 16.1 110 93-221 2-124 (170)
239 PF10662 PduV-EutP: Ethanolami 99.5 3.5E-14 7.6E-19 128.4 10.9 97 91-220 2-102 (143)
240 cd04133 Rop_like Rop subfamily 99.5 1.1E-13 2.4E-18 132.0 15.1 114 91-221 2-119 (176)
241 KOG0092 GTPase Rab5/YPT51 and 99.5 7E-14 1.5E-18 129.7 12.9 111 91-221 6-124 (200)
242 cd04130 Wrch_1 Wrch-1 subfamil 99.5 1.3E-13 2.8E-18 131.0 15.0 111 92-221 2-118 (173)
243 KOG0084 GTPase Rab1/YPT1, smal 99.5 1.4E-13 3.1E-18 128.2 14.5 117 88-222 7-129 (205)
244 cd00882 Ras_like_GTPase Ras-li 99.5 1.1E-13 2.3E-18 126.1 12.6 108 95-222 1-117 (157)
245 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.5 3.2E-13 6.9E-18 129.6 16.2 112 90-221 5-123 (182)
246 PF01926 MMR_HSR1: 50S ribosom 99.5 1.1E-13 2.5E-18 122.5 11.7 107 92-216 1-116 (116)
247 cd04148 RGK RGK subfamily. Th 99.5 3.4E-13 7.3E-18 133.6 16.2 113 92-221 2-120 (221)
248 KOG0078 GTP-binding protein SE 99.5 7.2E-13 1.6E-17 125.3 16.9 120 86-221 8-131 (207)
249 cd01896 DRG The developmentall 99.5 4.2E-13 9.1E-18 133.9 16.1 131 92-242 2-155 (233)
250 KOG0075 GTP-binding ADP-ribosy 99.5 1.2E-13 2.5E-18 122.0 10.3 112 91-222 21-137 (186)
251 cd04131 Rnd Rnd subfamily. Th 99.5 4.4E-13 9.5E-18 128.2 15.3 110 92-221 3-119 (178)
252 cd04105 SR_beta Signal recogni 99.5 2.4E-13 5.1E-18 132.9 13.6 112 91-223 1-125 (203)
253 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.5 7.8E-13 1.7E-17 131.4 17.0 114 90-220 13-130 (232)
254 KOG0073 GTP-binding ADP-ribosy 99.5 5.9E-13 1.3E-17 120.0 14.3 112 90-222 16-132 (185)
255 COG0536 Obg Predicted GTPase [ 99.5 2.3E-13 5E-18 137.0 12.8 137 67-221 136-289 (369)
256 cd04103 Centaurin_gamma Centau 99.5 1.8E-12 4E-17 121.4 16.6 104 92-220 2-112 (158)
257 PTZ00132 GTP-binding nuclear p 99.5 2.5E-12 5.5E-17 126.8 17.4 115 90-220 9-126 (215)
258 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.5 1.7E-12 3.7E-17 128.2 16.0 111 91-221 2-119 (222)
259 cd01852 AIG1 AIG1 (avrRpt2-ind 99.4 1.7E-12 3.7E-17 126.2 15.2 114 91-221 1-130 (196)
260 COG3596 Predicted GTPase [Gene 99.4 1.8E-12 3.9E-17 127.3 15.0 116 89-221 38-162 (296)
261 cd04129 Rho2 Rho2 subfamily. 99.4 3.8E-12 8.3E-17 122.6 15.6 111 91-221 2-119 (187)
262 PRK09866 hypothetical protein; 99.4 5.2E-12 1.1E-16 137.6 16.7 68 154-221 229-303 (741)
263 PF00071 Ras: Ras family; Int 99.4 7.2E-12 1.6E-16 117.2 15.2 114 92-221 1-118 (162)
264 COG1084 Predicted GTPase [Gene 99.4 4.1E-12 8.9E-17 127.6 13.8 125 89-231 167-305 (346)
265 cd01873 RhoBTB RhoBTB subfamil 99.4 7.2E-12 1.6E-16 121.6 15.2 66 154-221 65-134 (195)
266 cd04104 p47_IIGP_like p47 (47- 99.4 5.8E-12 1.3E-16 122.5 14.5 114 91-221 2-121 (197)
267 KOG0394 Ras-related GTPase [Ge 99.4 2.5E-12 5.3E-17 118.3 10.9 117 89-221 8-132 (210)
268 KOG0098 GTPase Rab2, small G p 99.4 3.2E-12 6.9E-17 117.7 11.5 115 91-221 7-125 (216)
269 KOG0070 GTP-binding ADP-ribosy 99.4 2.8E-12 6E-17 118.8 10.7 113 89-222 16-133 (181)
270 KOG0080 GTPase Rab18, small G 99.4 3.7E-12 8E-17 114.2 11.0 116 90-221 11-131 (209)
271 PF09439 SRPRB: Signal recogni 99.4 3.3E-12 7.1E-17 120.8 10.7 111 90-223 3-128 (181)
272 KOG1191 Mitochondrial GTPase [ 99.3 4.4E-12 9.6E-17 133.0 11.4 116 88-220 266-402 (531)
273 PRK13768 GTPase; Provisional 99.3 2E-11 4.4E-16 123.2 15.2 70 154-223 96-178 (253)
274 KOG1532 GTPase XAB1, interacts 99.3 1.8E-11 3.8E-16 119.4 13.3 137 88-224 17-198 (366)
275 KOG0093 GTPase Rab3, small G p 99.3 3.3E-11 7.2E-16 106.6 13.3 116 91-222 22-141 (193)
276 cd04102 RabL3 RabL3 (Rab-like3 99.3 3.5E-11 7.7E-16 117.2 15.0 115 92-222 2-144 (202)
277 cd01850 CDC_Septin CDC/Septin. 99.3 3.3E-11 7.2E-16 123.1 14.3 136 91-235 5-172 (276)
278 COG1163 DRG Predicted GTPase [ 99.3 1.4E-11 3.1E-16 123.2 11.1 205 89-360 62-289 (365)
279 PLN00023 GTP-binding protein; 99.3 4E-11 8.7E-16 122.8 14.6 122 85-222 16-166 (334)
280 PF08477 Miro: Miro-like prote 99.3 7E-12 1.5E-16 111.2 7.6 113 92-218 1-119 (119)
281 cd01899 Ygr210 Ygr210 subfamil 99.3 1E-10 2.3E-15 121.3 16.4 28 334-361 242-270 (318)
282 KOG0087 GTPase Rab11/YPT3, sma 99.2 4.7E-11 1E-15 112.6 11.1 119 87-221 11-133 (222)
283 PRK09435 membrane ATPase/prote 99.2 1.4E-10 3E-15 120.6 15.2 137 88-233 54-221 (332)
284 KOG0095 GTPase Rab30, small G 99.2 1.2E-10 2.6E-15 103.2 12.3 116 90-221 7-126 (213)
285 KOG0076 GTP-binding ADP-ribosy 99.2 4.5E-11 9.7E-16 109.0 9.4 119 91-222 18-141 (197)
286 KOG0086 GTPase Rab4, small G p 99.2 1.4E-10 3.1E-15 103.1 12.1 117 90-222 9-129 (214)
287 KOG0079 GTP-binding protein H- 99.2 7.1E-11 1.5E-15 104.5 9.6 116 91-222 9-127 (198)
288 KOG0088 GTPase Rab21, small G 99.2 1.5E-11 3.3E-16 109.9 5.3 115 91-221 14-132 (218)
289 PF03029 ATP_bind_1: Conserved 99.2 8.8E-11 1.9E-15 117.2 10.6 129 95-223 1-172 (238)
290 TIGR00073 hypB hydrogenase acc 99.2 3.8E-10 8.3E-15 110.6 14.7 130 83-221 15-162 (207)
291 COG1100 GTPase SAR1 and relate 99.2 6.6E-10 1.4E-14 109.5 15.5 112 91-222 6-126 (219)
292 KOG0071 GTP-binding ADP-ribosy 99.2 7.8E-10 1.7E-14 97.3 13.5 112 91-223 18-134 (180)
293 KOG0090 Signal recognition par 99.1 5.5E-10 1.2E-14 105.6 12.9 116 91-227 39-165 (238)
294 PRK09602 translation-associate 99.1 1.4E-09 3.1E-14 116.2 16.9 82 91-190 2-114 (396)
295 KOG0410 Predicted GTP binding 99.1 2.3E-10 4.9E-15 114.2 9.6 119 83-220 171-307 (410)
296 PTZ00099 rab6; Provisional 99.1 7.8E-10 1.7E-14 105.5 12.5 68 154-221 28-99 (176)
297 PF03144 GTP_EFTU_D2: Elongati 99.1 8.7E-11 1.9E-15 95.3 5.0 68 404-471 1-74 (74)
298 TIGR02836 spore_IV_A stage IV 99.1 1.8E-09 3.9E-14 112.5 14.1 151 91-243 18-216 (492)
299 KOG0395 Ras-related GTPase [Ge 99.0 2.4E-09 5.2E-14 103.7 13.4 115 90-221 3-122 (196)
300 KOG0074 GTP-binding ADP-ribosy 99.0 1.3E-09 2.9E-14 95.9 10.0 114 88-222 15-134 (185)
301 smart00053 DYNc Dynamin, GTPas 99.0 2.1E-09 4.6E-14 106.9 12.8 136 88-223 24-208 (240)
302 KOG0072 GTP-binding ADP-ribosy 99.0 5.2E-10 1.1E-14 98.8 7.1 113 89-222 17-134 (182)
303 cd01853 Toc34_like Toc34-like 99.0 6.6E-09 1.4E-13 104.4 15.3 117 87-237 28-146 (249)
304 COG4917 EutP Ethanolamine util 99.0 1.9E-09 4.2E-14 93.2 8.7 98 91-220 2-103 (148)
305 PF03308 ArgK: ArgK protein; 99.0 2.9E-09 6.2E-14 105.0 10.3 125 89-222 28-182 (266)
306 KOG0091 GTPase Rab39, small G 99.0 1.4E-08 3E-13 91.8 13.6 113 92-221 10-130 (213)
307 TIGR00750 lao LAO/AO transport 98.9 1.9E-08 4.1E-13 104.3 16.3 128 88-222 32-187 (300)
308 KOG0083 GTPase Rab26/Rab37, sm 98.9 5.4E-10 1.2E-14 97.2 4.0 112 95-221 2-117 (192)
309 PRK09601 GTP-binding protein Y 98.9 9E-08 1.9E-12 100.3 19.3 81 91-189 3-107 (364)
310 KOG0097 GTPase Rab14, small G 98.9 1.4E-08 3E-13 89.3 10.5 119 87-221 8-130 (215)
311 COG1703 ArgK Putative periplas 98.9 3.6E-08 7.8E-13 98.5 14.6 126 89-223 50-205 (323)
312 cd01342 Translation_Factor_II_ 98.9 1.5E-08 3.3E-13 82.7 9.2 78 390-471 1-82 (83)
313 TIGR00101 ureG urease accessor 98.8 5.3E-08 1.1E-12 94.7 14.4 61 154-221 91-151 (199)
314 PF00350 Dynamin_N: Dynamin fa 98.8 9.1E-09 2E-13 97.0 8.7 64 154-217 100-168 (168)
315 PF04670 Gtr1_RagA: Gtr1/RagA 98.8 3.9E-08 8.4E-13 97.3 12.5 115 92-223 1-127 (232)
316 TIGR00991 3a0901s02IAP34 GTP-b 98.8 1.2E-07 2.6E-12 97.0 16.3 116 88-220 36-166 (313)
317 KOG0081 GTPase Rab27, small G 98.8 1.4E-08 3.1E-13 91.1 8.3 68 155-222 67-139 (219)
318 cd01684 Tet_like_IV EF-G_domai 98.8 6.9E-09 1.5E-13 91.7 6.0 44 561-606 1-44 (115)
319 cd01693 mtEFG2_like_IV mtEF-G2 98.8 4.5E-09 9.8E-14 93.7 4.0 41 561-601 1-41 (120)
320 PRK10463 hydrogenase nickel in 98.8 4.2E-08 9E-13 99.6 11.3 131 83-221 97-244 (290)
321 cd03693 EF1_alpha_II EF1_alpha 98.8 7.8E-08 1.7E-12 81.3 10.8 85 387-475 2-90 (91)
322 KOG4252 GTP-binding protein [S 98.7 1.3E-08 2.8E-13 93.2 5.6 119 87-221 17-138 (246)
323 PF04548 AIG1: AIG1 family; I 98.7 1.5E-07 3.3E-12 92.5 13.5 115 91-222 1-131 (212)
324 PTZ00258 GTP-binding protein; 98.7 6E-08 1.3E-12 102.8 11.2 84 88-189 19-126 (390)
325 KOG1490 GTP-binding protein CR 98.7 4E-08 8.7E-13 103.5 9.5 117 87-221 165-295 (620)
326 cd03698 eRF3_II_like eRF3_II_l 98.7 9.4E-08 2E-12 79.3 9.8 79 389-472 1-83 (83)
327 cd01434 EFG_mtEFG1_IV EFG_mtEF 98.7 1.4E-08 3.1E-13 89.9 5.0 45 563-607 1-45 (116)
328 KOG2486 Predicted GTPase [Gene 98.7 5.7E-08 1.2E-12 95.7 9.5 118 86-221 132-262 (320)
329 PF05049 IIGP: Interferon-indu 98.7 8.6E-08 1.9E-12 100.5 11.5 109 91-219 36-153 (376)
330 KOG0077 Vesicle coat complex C 98.7 5.8E-08 1.3E-12 88.2 8.5 113 90-223 20-137 (193)
331 cd01900 YchF YchF subfamily. 98.7 4.2E-08 9E-13 99.6 8.6 79 93-189 1-103 (274)
332 COG5019 CDC3 Septin family pro 98.7 3.2E-07 6.9E-12 94.2 13.4 149 90-247 23-203 (373)
333 PF00735 Septin: Septin; Inte 98.6 3.9E-07 8.5E-12 93.2 13.1 137 91-236 5-172 (281)
334 PF03764 EFG_IV: Elongation fa 98.6 6.9E-08 1.5E-12 86.1 6.2 47 559-606 1-48 (120)
335 KOG0052 Translation elongation 98.6 1.9E-08 4.1E-13 103.9 1.7 130 89-221 6-156 (391)
336 cd01680 EFG_like_IV Elongation 98.5 7.6E-08 1.6E-12 85.2 4.8 44 563-606 1-44 (116)
337 cd01859 MJ1464 MJ1464. This f 98.5 3.7E-07 8.1E-12 85.1 9.6 51 170-220 4-54 (156)
338 COG5192 BMS1 GTP-binding prote 98.5 5.9E-07 1.3E-11 95.4 11.4 120 91-236 70-190 (1077)
339 COG0378 HypB Ni2+-binding GTPa 98.5 1.5E-06 3.2E-11 82.1 11.7 124 90-221 13-156 (202)
340 KOG1486 GTP-binding protein DR 98.4 2.6E-06 5.6E-11 82.7 12.6 83 91-191 63-152 (364)
341 cd04089 eRF3_II eRF3_II: domai 98.4 1.9E-06 4.1E-11 71.3 10.0 78 389-472 1-82 (82)
342 KOG1547 Septin CDC10 and relat 98.4 5E-06 1.1E-10 80.2 13.1 138 90-237 46-215 (336)
343 cd03112 CobW_like The function 98.4 1.9E-06 4E-11 80.7 10.1 125 91-219 1-158 (158)
344 TIGR00993 3a0901s04IAP86 chlor 98.4 7.6E-06 1.7E-10 90.5 16.1 118 87-221 115-250 (763)
345 KOG3883 Ras family small GTPas 98.4 7.2E-06 1.6E-10 73.7 12.5 117 89-221 8-132 (198)
346 TIGR01425 SRP54_euk signal rec 98.4 3E-05 6.5E-10 83.3 19.7 129 90-220 100-252 (429)
347 KOG2655 Septin family protein 98.3 6E-06 1.3E-10 85.7 13.5 143 91-243 22-195 (366)
348 cd03695 CysN_NodQ_II CysN_NodQ 98.3 4.6E-06 9.9E-11 68.8 9.8 78 391-472 2-81 (81)
349 cd03696 selB_II selB_II: this 98.3 3.9E-06 8.4E-11 69.6 9.3 78 391-472 2-83 (83)
350 KOG0393 Ras-related small GTPa 98.3 1.7E-06 3.8E-11 82.5 7.9 109 91-220 5-122 (198)
351 COG0012 Predicted GTPase, prob 98.3 9.7E-06 2.1E-10 84.1 13.2 81 91-189 3-108 (372)
352 PRK14722 flhF flagellar biosyn 98.3 2E-06 4.4E-11 90.8 8.1 128 88-220 135-294 (374)
353 cd01858 NGP_1 NGP-1. Autoanti 98.3 3.7E-06 7.9E-11 78.6 9.0 50 172-221 2-53 (157)
354 cd03697 EFTU_II EFTU_II: Elong 98.3 5.5E-06 1.2E-10 69.3 8.9 79 391-473 2-86 (87)
355 cd03694 GTPBP_II Domain II of 98.2 1.1E-05 2.3E-10 67.6 9.8 78 391-472 2-87 (87)
356 COG0523 Putative GTPases (G3E 98.2 1.3E-05 2.9E-10 83.2 12.1 131 90-223 1-161 (323)
357 PRK11537 putative GTP-binding 98.2 1.6E-05 3.5E-10 82.9 12.5 141 89-233 3-175 (318)
358 cd03110 Fer4_NifH_child This p 98.2 4.2E-05 9.2E-10 72.9 14.3 68 153-222 91-158 (179)
359 cd03114 ArgK-like The function 98.2 1.5E-05 3.3E-10 73.7 10.8 59 153-218 90-148 (148)
360 TIGR02475 CobW cobalamin biosy 98.2 3.5E-05 7.5E-10 81.2 14.6 146 88-236 2-203 (341)
361 PRK00771 signal recognition pa 98.1 0.00017 3.6E-09 78.2 19.9 127 89-220 94-245 (437)
362 cd01855 YqeH YqeH. YqeH is an 98.1 7.2E-06 1.6E-10 79.1 8.4 55 165-221 21-75 (190)
363 cd02036 MinD Bacterial cell di 98.1 5.2E-05 1.1E-09 71.9 14.1 82 156-239 64-146 (179)
364 PF03193 DUF258: Protein of un 98.1 1.4E-06 3.1E-11 81.0 3.1 65 91-168 36-100 (161)
365 cd03115 SRP The signal recogni 98.1 2.2E-05 4.8E-10 74.5 11.4 67 153-221 81-153 (173)
366 KOG0096 GTPase Ran/TC4/GSP1 (n 98.1 4.3E-06 9.3E-11 77.9 6.1 113 89-221 9-128 (216)
367 PRK10867 signal recognition pa 98.1 0.00022 4.7E-09 77.2 19.9 212 90-333 100-345 (433)
368 PRK10416 signal recognition pa 98.1 5.1E-05 1.1E-09 79.1 14.4 145 89-237 113-287 (318)
369 cd01858 NGP_1 NGP-1. Autoanti 98.1 5.6E-06 1.2E-10 77.3 6.3 56 90-165 102-157 (157)
370 KOG3886 GTP-binding protein [S 98.1 7.6E-06 1.6E-10 78.7 7.0 121 90-229 4-138 (295)
371 TIGR03596 GTPase_YlqF ribosome 98.1 9.7E-06 2.1E-10 83.1 8.5 56 163-220 5-61 (276)
372 TIGR03597 GTPase_YqeH ribosome 98.0 5.2E-06 1.1E-10 88.3 5.8 131 91-237 155-297 (360)
373 cd01856 YlqF YlqF. Proteins o 98.0 1.5E-05 3.2E-10 75.7 8.2 57 162-220 2-59 (171)
374 TIGR00064 ftsY signal recognit 98.0 5.6E-05 1.2E-09 77.1 12.6 126 88-220 70-230 (272)
375 KOG1673 Ras GTPases [General f 98.0 4.5E-05 9.7E-10 68.8 9.8 114 91-220 21-137 (205)
376 TIGR00959 ffh signal recogniti 98.0 0.0006 1.3E-08 73.7 20.5 81 153-238 181-268 (428)
377 PF00448 SRP54: SRP54-type pro 98.0 3.2E-05 7E-10 75.0 9.7 123 91-220 2-153 (196)
378 cd01849 YlqF_related_GTPase Yl 98.0 1.9E-05 4E-10 73.6 7.8 42 180-221 1-43 (155)
379 cd04178 Nucleostemin_like Nucl 98.0 1.1E-05 2.4E-10 76.5 6.1 56 90-165 117-172 (172)
380 KOG1954 Endocytosis/signaling 98.0 3.5E-05 7.6E-10 78.8 9.6 134 89-222 57-226 (532)
381 cd01855 YqeH YqeH. YqeH is an 98.0 1E-05 2.3E-10 78.0 5.5 62 91-165 128-190 (190)
382 PRK12288 GTPase RsgA; Reviewed 97.9 1.1E-05 2.4E-10 85.0 6.0 66 91-169 206-271 (347)
383 TIGR00092 GTP-binding protein 97.9 3E-05 6.4E-10 81.6 9.1 81 91-189 3-108 (368)
384 cd03692 mtIF2_IVc mtIF2_IVc: t 97.9 7.9E-05 1.7E-09 61.9 9.9 73 394-470 5-82 (84)
385 PF02492 cobW: CobW/HypB/UreG, 97.9 2.2E-05 4.8E-10 75.0 7.2 140 91-233 1-169 (178)
386 cd01851 GBP Guanylate-binding 97.9 6.7E-05 1.4E-09 74.4 10.7 88 88-190 5-103 (224)
387 COG1162 Predicted GTPases [Gen 97.9 9.7E-06 2.1E-10 82.2 4.6 65 91-168 165-229 (301)
388 cd01849 YlqF_related_GTPase Yl 97.9 1.9E-05 4.1E-10 73.6 5.9 57 89-165 99-155 (155)
389 KOG0448 Mitofusin 1 GTPase, in 97.9 0.00011 2.4E-09 80.8 12.1 143 89-233 108-286 (749)
390 PRK12727 flagellar biosynthesi 97.9 0.00012 2.5E-09 80.1 12.1 141 88-231 348-507 (559)
391 TIGR00157 ribosome small subun 97.9 1.8E-05 3.9E-10 79.6 5.5 64 91-168 121-184 (245)
392 PRK14974 cell division protein 97.9 9.9E-05 2.1E-09 77.3 11.0 130 89-220 139-292 (336)
393 KOG2743 Cobalamin synthesis pr 97.8 9.4E-05 2E-09 73.9 10.1 152 83-234 50-239 (391)
394 PRK09563 rbgA GTPase YlqF; Rev 97.8 3.2E-05 6.9E-10 79.8 7.1 59 89-167 120-178 (287)
395 TIGR03596 GTPase_YlqF ribosome 97.8 5.9E-05 1.3E-09 77.4 8.7 57 89-165 117-173 (276)
396 KOG1707 Predicted Ras related/ 97.8 8.3E-05 1.8E-09 80.5 9.7 114 91-222 10-130 (625)
397 PRK09563 rbgA GTPase YlqF; Rev 97.8 4.2E-05 9.1E-10 78.9 7.3 57 162-220 7-64 (287)
398 cd01857 HSR1_MMR1 HSR1/MMR1. 97.8 2.9E-05 6.2E-10 71.2 5.2 55 92-166 85-139 (141)
399 PRK12289 GTPase RsgA; Reviewed 97.8 2.9E-05 6.3E-10 81.9 5.2 65 92-169 174-238 (352)
400 COG1161 Predicted GTPases [Gen 97.7 4.7E-05 1E-09 79.6 6.2 57 91-167 133-189 (322)
401 PRK11889 flhF flagellar biosyn 97.7 0.00034 7.4E-09 73.9 12.1 129 89-221 240-391 (436)
402 cd01856 YlqF YlqF. Proteins o 97.7 6.8E-05 1.5E-09 71.1 6.4 57 89-165 114-170 (171)
403 PRK13796 GTPase YqeH; Provisio 97.7 6E-05 1.3E-09 80.3 6.6 62 91-167 161-222 (365)
404 COG3640 CooC CO dehydrogenase 97.7 0.00035 7.5E-09 68.0 11.0 64 154-220 133-198 (255)
405 cd02038 FleN-like FleN is a me 97.7 0.00053 1.2E-08 62.6 11.9 76 155-233 45-122 (139)
406 cd01857 HSR1_MMR1 HSR1/MMR1. 97.7 0.00018 3.9E-09 65.9 8.3 52 170-221 3-56 (141)
407 KOG1491 Predicted GTP-binding 97.7 0.00014 3E-09 74.1 8.0 84 89-190 19-126 (391)
408 cd01854 YjeQ_engC YjeQ/EngC. 97.7 6.5E-05 1.4E-09 77.4 5.8 66 91-169 162-227 (287)
409 PF09547 Spore_IV_A: Stage IV 97.6 0.00051 1.1E-08 72.3 11.8 152 91-244 18-217 (492)
410 KOG1534 Putative transcription 97.6 0.00041 8.8E-09 66.1 9.8 68 155-222 98-179 (273)
411 COG0541 Ffh Signal recognition 97.6 0.0042 9.1E-08 65.9 18.2 148 153-332 181-343 (451)
412 cd03702 IF2_mtIF2_II This fami 97.6 0.00052 1.1E-08 58.1 9.3 77 391-472 2-79 (95)
413 PRK14721 flhF flagellar biosyn 97.6 0.00049 1.1E-08 74.0 11.5 130 89-220 190-339 (420)
414 PRK12289 GTPase RsgA; Reviewed 97.6 0.00034 7.3E-09 73.9 9.9 47 175-221 86-134 (352)
415 PRK12726 flagellar biosynthesi 97.6 0.00073 1.6E-08 71.2 12.1 26 88-113 204-229 (407)
416 TIGR00157 ribosome small subun 97.5 0.00021 4.5E-09 71.9 7.5 50 172-221 30-81 (245)
417 cd02037 MRP-like MRP (Multiple 97.5 0.00048 1E-08 65.1 9.1 83 153-237 66-159 (169)
418 KOG2485 Conserved ATP/GTP bind 97.5 0.0003 6.5E-09 71.1 7.8 80 87-178 140-220 (335)
419 PRK08099 bifunctional DNA-bind 97.5 0.00052 1.1E-08 73.9 9.9 143 87-236 216-395 (399)
420 PRK00098 GTPase RsgA; Reviewed 97.5 0.00017 3.8E-09 74.7 6.0 65 91-168 165-229 (298)
421 cd02117 NifH_like This family 97.4 0.0012 2.5E-08 65.0 11.4 86 153-241 115-207 (212)
422 cd01854 YjeQ_engC YjeQ/EngC. 97.4 0.00036 7.9E-09 71.9 8.1 47 175-221 75-123 (287)
423 PRK13849 putative crown gall t 97.4 0.001 2.2E-08 66.3 11.0 64 153-218 82-151 (231)
424 TIGR03597 GTPase_YqeH ribosome 97.4 0.00043 9.3E-09 73.7 8.8 54 166-221 51-104 (360)
425 KOG1487 GTP-binding protein DR 97.4 0.00044 9.6E-09 67.8 8.0 85 91-193 60-151 (358)
426 PHA02518 ParA-like protein; Pr 97.4 0.0016 3.5E-08 63.5 12.2 138 92-231 2-157 (211)
427 cd01859 MJ1464 MJ1464. This f 97.4 0.0003 6.5E-09 65.4 6.6 23 89-111 100-122 (156)
428 KOG1533 Predicted GTPase [Gene 97.4 0.00012 2.7E-09 70.7 3.7 129 93-221 5-177 (290)
429 PRK00098 GTPase RsgA; Reviewed 97.4 0.00047 1E-08 71.5 8.3 46 175-220 77-124 (298)
430 PRK12724 flagellar biosynthesi 97.4 0.00099 2.1E-08 71.2 10.6 128 91-220 224-372 (432)
431 cd03688 eIF2_gamma_II eIF2_gam 97.3 0.0018 4E-08 55.7 9.8 84 386-470 2-104 (113)
432 PRK05703 flhF flagellar biosyn 97.3 0.0019 4.1E-08 70.2 11.8 139 90-231 221-380 (424)
433 TIGR01969 minD_arch cell divis 97.3 0.0053 1.2E-07 61.6 14.2 82 153-238 107-189 (251)
434 PRK12723 flagellar biosynthesi 97.3 0.0025 5.4E-08 68.1 12.2 129 90-220 174-325 (388)
435 KOG0447 Dynamin-like GTP bindi 97.3 0.0027 5.8E-08 68.2 12.1 138 86-223 304-495 (980)
436 KOG4423 GTP-binding protein-li 97.3 3E-05 6.6E-10 72.1 -2.0 115 89-221 24-149 (229)
437 PRK13185 chlL protochlorophyll 97.2 0.0039 8.4E-08 63.6 12.9 82 153-240 116-202 (270)
438 COG1419 FlhF Flagellar GTP-bin 97.2 0.0023 4.9E-08 67.7 11.2 126 89-221 202-352 (407)
439 PRK06731 flhF flagellar biosyn 97.2 0.0031 6.7E-08 64.1 11.9 131 89-221 74-225 (270)
440 cd03703 aeIF5B_II aeIF5B_II: T 97.2 0.0026 5.6E-08 55.0 9.5 81 391-471 2-93 (110)
441 cd00066 G-alpha G protein alph 97.2 0.00068 1.5E-08 70.9 7.2 82 140-221 146-242 (317)
442 TIGR03371 cellulose_yhjQ cellu 97.2 0.0044 9.5E-08 62.1 12.6 82 155-238 115-199 (246)
443 PRK06995 flhF flagellar biosyn 97.2 0.0017 3.6E-08 71.1 9.9 129 89-220 255-404 (484)
444 cd02032 Bchl_like This family 97.2 0.007 1.5E-07 61.6 14.0 81 154-240 115-200 (267)
445 PRK14723 flhF flagellar biosyn 97.2 0.0022 4.7E-08 73.5 10.8 129 90-220 185-336 (767)
446 smart00275 G_alpha G protein a 97.1 0.0012 2.6E-08 69.7 8.2 82 139-220 168-264 (342)
447 PRK01889 GTPase RsgA; Reviewed 97.1 0.0024 5.2E-08 67.9 10.3 46 176-221 110-156 (356)
448 cd03111 CpaE_like This protein 97.1 0.0053 1.1E-07 53.3 10.5 59 156-216 44-106 (106)
449 cd02042 ParA ParA and ParB of 97.1 0.0037 7.9E-08 53.7 9.4 81 93-200 2-83 (104)
450 cd03701 IF2_IF5B_II IF2_IF5B_I 97.1 0.0033 7.1E-08 53.4 8.7 76 391-471 2-78 (95)
451 TIGR01007 eps_fam capsular exo 97.1 0.0067 1.4E-07 59.1 12.1 68 153-221 126-194 (204)
452 PRK13796 GTPase YqeH; Provisio 97.0 0.0033 7.2E-08 67.0 10.4 52 167-221 58-110 (365)
453 PRK13232 nifH nitrogenase redu 97.0 0.0051 1.1E-07 62.9 11.2 91 152-245 114-209 (273)
454 CHL00072 chlL photochlorophyll 97.0 0.0088 1.9E-07 61.8 13.0 85 154-245 115-204 (290)
455 KOG1424 Predicted GTP-binding 97.0 0.00069 1.5E-08 72.6 4.6 74 90-183 314-387 (562)
456 CHL00175 minD septum-site dete 97.0 0.018 3.8E-07 59.2 15.0 89 154-245 126-217 (281)
457 TIGR01281 DPOR_bchL light-inde 96.9 0.0089 1.9E-07 60.9 12.2 82 153-240 114-200 (268)
458 cd02040 NifH NifH gene encodes 96.9 0.0082 1.8E-07 61.1 11.8 90 153-245 115-210 (270)
459 PRK12288 GTPase RsgA; Reviewed 96.9 0.0046 9.9E-08 65.3 10.1 46 176-221 118-164 (347)
460 cd01983 Fer4_NifH The Fer4_Nif 96.9 0.0064 1.4E-07 50.7 9.3 77 93-199 2-79 (99)
461 KOG3887 Predicted small GTPase 96.9 0.017 3.8E-07 56.3 12.4 116 91-223 28-151 (347)
462 PF14578 GTP_EFTU_D4: Elongati 96.8 0.01 2.2E-07 48.4 8.9 75 389-471 4-80 (81)
463 KOG4181 Uncharacterized conser 96.8 0.016 3.4E-07 59.4 12.2 24 88-111 186-209 (491)
464 KOG3859 Septins (P-loop GTPase 96.8 0.0057 1.2E-07 60.7 8.8 143 90-247 42-218 (406)
465 TIGR03815 CpaE_hom_Actino heli 96.8 0.03 6.4E-07 58.8 14.9 81 153-239 203-283 (322)
466 TIGR03348 VI_IcmF type VI secr 96.8 0.0035 7.6E-08 76.7 8.9 118 88-221 109-257 (1169)
467 PRK13230 nitrogenase reductase 96.8 0.014 2.9E-07 60.0 11.8 92 153-246 115-211 (279)
468 KOG2484 GTPase [General functi 96.7 0.0011 2.5E-08 68.9 3.6 83 87-189 249-333 (435)
469 TIGR01287 nifH nitrogenase iro 96.6 0.017 3.7E-07 59.1 11.3 89 154-245 115-209 (275)
470 COG0552 FtsY Signal recognitio 96.6 0.009 1.9E-07 61.5 8.9 126 89-219 138-296 (340)
471 KOG0780 Signal recognition par 96.6 0.013 2.8E-07 61.0 9.8 125 90-219 101-252 (483)
472 PRK10751 molybdopterin-guanine 96.4 0.0085 1.8E-07 56.7 7.0 23 89-111 5-27 (173)
473 PRK13695 putative NTPase; Prov 96.4 0.0083 1.8E-07 56.9 7.0 35 183-217 99-136 (174)
474 KOG2423 Nucleolar GTPase [Gene 96.4 0.0017 3.8E-08 67.2 2.2 26 86-111 303-328 (572)
475 COG3523 IcmF Type VI protein s 96.4 0.015 3.2E-07 69.6 10.2 125 89-231 124-279 (1188)
476 cd04178 Nucleostemin_like Nucl 96.4 0.0047 1E-07 58.6 4.9 42 180-221 1-44 (172)
477 COG1763 MobB Molybdopterin-gua 96.3 0.02 4.4E-07 53.4 8.5 22 90-111 2-23 (161)
478 PRK13235 nifH nitrogenase redu 96.1 0.071 1.5E-06 54.5 12.6 85 153-239 116-206 (274)
479 PRK01889 GTPase RsgA; Reviewed 96.1 0.008 1.7E-07 63.9 5.6 65 91-168 196-260 (356)
480 PRK13233 nifH nitrogenase redu 96.1 0.027 5.8E-07 57.6 9.4 81 153-240 117-208 (275)
481 PRK13231 nitrogenase reductase 96.1 0.075 1.6E-06 54.0 12.4 86 153-240 112-199 (264)
482 PRK14493 putative bifunctional 96.0 0.02 4.2E-07 58.5 7.8 23 91-113 2-24 (274)
483 cd02035 ArsA ArsA ATPase funct 96.0 0.09 2E-06 51.8 12.2 66 155-220 114-183 (217)
484 cd03116 MobB Molybdenum is an 96.0 0.034 7.4E-07 52.0 8.6 22 91-112 2-23 (159)
485 PF07015 VirC1: VirC1 protein; 96.0 0.048 1E-06 53.7 9.7 121 97-219 9-152 (231)
486 COG1618 Predicted nucleotide k 95.9 0.15 3.3E-06 47.2 12.2 59 170-235 92-153 (179)
487 KOG3905 Dynein light intermedi 95.9 0.23 4.9E-06 50.8 14.4 23 89-111 51-73 (473)
488 cd00550 ArsA_ATPase Oxyanion-t 95.8 0.12 2.5E-06 52.4 12.1 86 153-238 123-231 (254)
489 PRK13236 nitrogenase reductase 95.7 0.13 2.9E-06 53.2 12.6 86 153-240 120-211 (296)
490 PRK13234 nifH nitrogenase redu 95.6 0.056 1.2E-06 55.9 9.4 89 153-245 118-213 (295)
491 smart00010 small_GTPase Small 95.6 0.02 4.4E-07 50.2 5.3 20 92-111 2-21 (124)
492 TIGR03018 pepcterm_TyrKin exop 95.6 0.092 2E-06 51.3 10.2 57 156-215 150-207 (207)
493 PF05783 DLIC: Dynein light in 95.5 0.29 6.2E-06 53.8 14.7 22 90-111 25-46 (472)
494 PF05621 TniB: Bacterial TniB 95.5 0.13 2.7E-06 52.8 10.9 26 86-111 57-82 (302)
495 PF13555 AAA_29: P-loop contai 95.4 0.014 3E-07 45.2 3.0 20 92-111 25-44 (62)
496 COG0455 flhG Antiactivator of 95.4 0.26 5.5E-06 50.0 12.9 63 154-218 112-177 (262)
497 TIGR02016 BchX chlorophyllide 95.3 0.68 1.5E-05 48.0 16.1 85 154-246 122-215 (296)
498 PRK14495 putative molybdopteri 95.3 0.071 1.5E-06 57.3 8.7 23 91-113 2-24 (452)
499 TIGR03499 FlhF flagellar biosy 95.2 0.019 4.2E-07 59.0 4.3 25 89-113 193-217 (282)
500 PF06858 NOG1: Nucleolar GTP-b 95.2 0.051 1.1E-06 41.1 5.3 41 178-218 13-58 (58)
No 1
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.8e-113 Score=892.76 Aligned_cols=519 Identities=56% Similarity=0.897 Sum_probs=492.8
Q ss_pred ccCCCCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeC
Q 007325 83 RVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDT 162 (608)
Q Consensus 83 ~~~~~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDT 162 (608)
...+.+++|||+|+.|.++|||||.++++|++|.+..++++..+.+.||+++.|++||||+++....+.|.++.+|+|||
T Consensus 32 ~~~~~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDT 111 (721)
T KOG0465|consen 32 ARIPLNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDT 111 (721)
T ss_pred ccCchhhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecC
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCCcHHHHHHHHHHhhCCccEEE
Q 007325 163 PGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVV 242 (608)
Q Consensus 163 PG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~ 242 (608)
|||+||..++++++++.|+||+|+|++.|++.||..+|+++.++++|.+.|+||||+.++++.+++++|+..|.++++.+
T Consensus 112 PGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmGa~~~~~l~~i~~kl~~~~a~v 191 (721)
T KOG0465|consen 112 PGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMGASPFRTLNQIRTKLNHKPAVV 191 (721)
T ss_pred CCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhcCCChHHHHHHHHhhcCCchhee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHHhcCCCCCHHHHH
Q 007325 243 QLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIK 322 (608)
Q Consensus 243 ~~pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l~~~~~~~~el~ 322 (608)
|+|++.+.+|.|++|++.+++++|+++ .|......++|+++.+.+.+.|++|+|.+++.||+|.|.||++++++.++|.
T Consensus 192 qiPig~e~~f~GvvDlv~~kai~~~g~-~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~e~fLee~~ps~~~l~ 270 (721)
T KOG0465|consen 192 QIPIGSESNFKGVVDLVNGKAIYWDGE-NGEIVRKDEIPEDLEELAEEKRQALIETLADVDETLAEMFLEEEEPSAQQLK 270 (721)
T ss_pred EccccccccchhHHhhhhceEEEEcCC-CCceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccCCCCHHHHH
Confidence 999999999999999999999999976 4666777999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccCcceeeeeeccCCCCChHHHHHHHHHhCCCCCCCCCCCCC-CCCCccchhccccCCCC-CeEEEEEEeeec
Q 007325 323 KLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGT-DPENPEATLERAASDDE-PFAGLAFKIMSD 400 (608)
Q Consensus 323 ~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~-~~~~~~~~~~~~~~~~~-p~~~~V~K~~~d 400 (608)
.++++.++.+.|+|||||||++|.||++|||+|++|||+|.+...+... +.+++ +...+..+.+. ||++++||+..+
T Consensus 271 ~aIRr~Ti~r~fvPVl~GSAlKNkGVQPlLDAVvdYLPsP~Ev~n~a~~ke~~~~-ekv~l~~~~d~~Pfv~LAFKle~g 349 (721)
T KOG0465|consen 271 AAIRRATIKRSFVPVLCGSALKNKGVQPLLDAVVDYLPSPSEVENYALNKETNSK-EKVTLSPSRDKDPFVALAFKLEEG 349 (721)
T ss_pred HHHHHHHhhcceeeEEechhhcccCcchHHHHHHHhCCChhhhcccccccCCCCc-cceEeccCCCCCceeeeEEEeeec
Confidence 9999999999999999999999999999999999999999998876655 22122 22333333333 999999999999
Q ss_pred CCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCeeecCCEEEEcCCCcccccceeccC-CCCccc
Q 007325 401 PFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDA-DHPILL 479 (608)
Q Consensus 401 ~~~G~la~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~GdtL~~~-~~~~~l 479 (608)
++ |.+.|+|||+|+|++||.|||.++++++|+++|++|+++.+++|+++.|||||++.|+ ++.+|||+++. .....+
T Consensus 350 ~f-GqLTyvRvYqG~L~kG~~iyN~rtgKKvrv~RL~rmHa~~medV~~v~AG~I~alfGi-dcasGDTftd~~~~~~~m 427 (721)
T KOG0465|consen 350 RF-GQLTYVRVYQGTLSKGDTIYNVRTGKKVRVGRLVRMHANDMEDVNEVLAGDICALFGI-DCASGDTFTDKQNLALSM 427 (721)
T ss_pred Cc-cceEEEEEeeeeecCCcEEEecCCCceeEhHHHhHhcccccchhhhhhccceeeeecc-ccccCceeccCcccccee
Confidence 99 9999999999999999999999999999999999999999999999999999999999 79999999987 667789
Q ss_pred CCCCCCCceEEEEEEeCCCCCHHHHHHHHHHHHHhCCeeEEEEeCCCCcEEEEeeChhhHHHHHHHHHhhcCeEEEEecc
Q 007325 480 ERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAP 559 (608)
Q Consensus 480 ~~~~~~~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~vl~g~GelHLev~~~rL~~~f~vev~~s~p 559 (608)
+.|.+|+||++++|+|.+..|.+++.+||.++.+|||+|++..|+|++|++|+|||||||||..+||+++||+++.+++|
T Consensus 428 ~si~vPePVis~aikP~~k~d~~~fskaL~rf~~EDPtFrv~~d~E~kqTvIsGMGELHLEIy~eRl~rEy~~~~~~Gkp 507 (721)
T KOG0465|consen 428 ESIHIPEPVISVAIKPVNKKDADNFSKALNRFTKEDPTFRVSLDPEMKQTVISGMGELHLEIYVERLVREYKVDAELGKP 507 (721)
T ss_pred eeeecCCCeeEEEecccccccHHHHHHHHHhhcccCCceEEEeccccccchhhccchhhHHHHHHHHHHHhCCccccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeeecceeEEEEEeeecCCCCeeEEEEEEEEecCCCCccee
Q 007325 560 QVNYRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEVQCQKNI 605 (608)
Q Consensus 560 ~V~yrETi~~~~~~~~~~~kq~gg~gq~~~v~~~~ePl~~g~g~~~ 605 (608)
+|+|||||..+++.++.|||||||.||||+|.-.+||+|.|....|
T Consensus 508 ~VayRETi~~~~~f~~~hKkqSgG~gqy~kv~g~~epl~~~~~~~~ 553 (721)
T KOG0465|consen 508 QVAYRETITSPVEFDYTHKKQSGGAGQYGKVEGVIEPLPPGSNEKF 553 (721)
T ss_pred eeeehhhcCCcccceeeeccccCCCccccceeeEEeecCCCCCceE
Confidence 9999999999999999999999999999999999999999887653
No 2
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-110 Score=928.57 Aligned_cols=517 Identities=65% Similarity=1.056 Sum_probs=495.0
Q ss_pred CCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC-eeEEEEeCCCC
Q 007325 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK-HRINIIDTPGH 165 (608)
Q Consensus 87 ~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~-~~i~liDTPG~ 165 (608)
.+++|||+|+||.+||||||+++|++.+|.+.+.|++++|++++||+++|++||||++++..++.|++ ++|||||||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 67899999999999999999999999999999999999999999999999999999999999999996 99999999999
Q ss_pred CCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCCcHHHHHHHHHHhhCCccEEEecc
Q 007325 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLP 245 (608)
Q Consensus 166 ~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~p 245 (608)
+||..++.++++.+|+||+||||.+|+++||+.+|+++.++++|+++|+||||+..+++..++++++++|+..+.++|+|
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~~~~~~v~~p 166 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGADFYLVVEQLKERLGANPVPVQLP 166 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECccccccChhhhHHHHHHHhCCCceeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHHhcCCCCCHHHHHHHH
Q 007325 246 VGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLI 325 (608)
Q Consensus 246 i~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l~~~~~~~~el~~~l 325 (608)
|+.++.|.|++|++.++++.|.. |..+...++|++..+...++|..++|.+++.||++||+|++|.+++.+++++.+
T Consensus 167 Ig~~~~f~g~idl~~~~~~~~~~---~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de~l~e~yl~g~e~~~~~i~~~i 243 (697)
T COG0480 167 IGAEEEFEGVIDLVEMKAVAFGD---GAKYEWIEIPADLKEIAEEAREKLLEALAEFDEELMEKYLEGEEPTEEEIKKAL 243 (697)
T ss_pred ccCccccCceeEhhhcCeEEEcC---CcccceeeCCHHHHhHHHHHHHHHHHHHhhcCHHHHHHHhcCCCccHHHHHHHH
Confidence 99999999999999999999984 444555788999999999999999999999999999999999999999999999
Q ss_pred HhhcccCcceeeeeeccCCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccchhccccCCCCCeEEEEEEeeecCCCce
Q 007325 326 RKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGS 405 (608)
Q Consensus 326 ~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~~G~ 405 (608)
++.++.+.++|++|+||++|.|++.|||+|++++|+|.+.+...+...+.......+.+++++|++++|||+..||++|+
T Consensus 244 ~~~~~~~~~~pvl~gsa~kn~gv~~lLdav~~~lPsP~e~~~~~g~~~~~~~~~~~~~~~~e~p~~a~vfKi~~d~~~g~ 323 (697)
T COG0480 244 RKGTIAGKIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPPIKGDLDDEIEKAVLRKASDEGPLSALVFKIMTDPFVGK 323 (697)
T ss_pred HHhhhccceeeEEeeecccCCcHHHHHHHHHHHCCChhhcccccccCCccccchhcccCCCCCceEEEEEEeEecCCCCe
Confidence 99999999999999999999999999999999999999988766654322223333466779999999999999999999
Q ss_pred EEEEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCeeecCCEEEEcCCCcccccceeccCCCCcccCCCCCC
Q 007325 406 LTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERMDFP 485 (608)
Q Consensus 406 la~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~GdtL~~~~~~~~l~~~~~~ 485 (608)
++|+|||||+|++||.|+|.++++++||++|+.|+|+++++++++.||||+++.||+++.+|||||+.+.+..++++.+|
T Consensus 324 l~~~RvysGtl~~G~~v~n~~~~~~erv~~l~~~~~~~~~~v~~~~AG~I~a~~Gl~~~~tGdTl~~~~~~v~~~~~~~p 403 (697)
T COG0480 324 LTFVRVYSGTLKSGSEVLNSTKGKKERVGRLLLMHGNEREEVDEVPAGDIVALVGLKDATTGDTLCDENKPVILESMEFP 403 (697)
T ss_pred EEEEEEeccEEcCCCEEEeCCCCccEEEEEEEEccCCceeecccccCccEEEEEcccccccCCeeecCCCccccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999988767889999999
Q ss_pred CceEEEEEEeCCCCCHHHHHHHHHHHHHhCCeeEEEEeCCCCcEEEEeeChhhHHHHHHHHHhhcCeEEEEecceEEEEE
Q 007325 486 DPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRE 565 (608)
Q Consensus 486 ~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~vl~g~GelHLev~~~rL~~~f~vev~~s~p~V~yrE 565 (608)
+|+++++|+|+++.|++||.+||++|++|||+++++.|+||||++|+|||||||||+++||+++|||++++++|+|+|||
T Consensus 404 ePVi~vavepk~~~d~~Kl~~aL~~l~~eDPt~~v~~d~Etge~iIsGmGELHLei~~drl~~~~~Vev~~~~PqV~YrE 483 (697)
T COG0480 404 EPVISVAVEPKTKADQEKLSEALNKLAEEDPTFRVETDEETGETIISGMGELHLEIIVDRLKREFGVEVEVGKPQVAYRE 483 (697)
T ss_pred CceEEEEEeECChhhHHHHHHHHHHHHhhCCceEEEEcCCcccEEEEecchhhHHHHHHHHHhhcCceEEecCCeeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecceeEEEEEeeecCCCCeeEEEEEEEEecCCCCcceee
Q 007325 566 SISKVSEVKYVHKKQSGGQGQFADITVRFEPMEVQCQKNIF 606 (608)
Q Consensus 566 Ti~~~~~~~~~~~kq~gg~gq~~~v~~~~ePl~~g~g~~~~ 606 (608)
||++.+...++|+|||||+||||+|++++||+++|.||+|.
T Consensus 484 Ti~~~~~~~~~~~kqsgg~~q~~~v~i~~EP~~~~~~~~f~ 524 (697)
T COG0480 484 TIRKKSEVEGKHKKQSGGPGQYGHVYIEIEPLEDGSGFEFV 524 (697)
T ss_pred eecccccceeeeeeccCCCCcccEEEEEEEeCCCCcceEEE
Confidence 99999999999999999999999999999999999999996
No 3
>PRK00007 elongation factor G; Reviewed
Probab=100.00 E-value=4.8e-100 Score=866.51 Aligned_cols=522 Identities=70% Similarity=1.106 Sum_probs=492.0
Q ss_pred CCCCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCC
Q 007325 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG 164 (608)
Q Consensus 85 ~~~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 164 (608)
.+.+++|||+|+||+|+|||||+|+|++.+|.+...|.++.|++++|+.+.|++||+|+++...++.|++++++|+||||
T Consensus 5 ~~~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG 84 (693)
T PRK00007 5 TPLERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPG 84 (693)
T ss_pred CcccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCC
Confidence 35678999999999999999999999999999988899999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCCcHHHHHHHHHHhhCCccEEEec
Q 007325 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQL 244 (608)
Q Consensus 165 ~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~ 244 (608)
|.+|..++.++++.+|++|+|||+.+|++.|++.+|+++...++|+++|+||+|+..+++.+.++++++.++..+.+.++
T Consensus 85 ~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~~~~~~~~~i~~~l~~~~~~~~i 164 (693)
T PRK00007 85 HVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGADFYRVVEQIKDRLGANPVPIQL 164 (693)
T ss_pred cHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCeeeEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHHhcCCCCCHHHHHHH
Q 007325 245 PVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKL 324 (608)
Q Consensus 245 pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l~~~~~~~~el~~~ 324 (608)
|++...+|.|++|++.+.++.|.....|..++..++|..+.+...++|.+|+|.+++.||++||+||+|++++.+++++.
T Consensus 165 pisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~l~~~~l~~~ 244 (693)
T PRK00007 165 PIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAAEADEELMEKYLEGEELTEEEIKAA 244 (693)
T ss_pred cCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHhCcCCCCHHHHHHH
Confidence 99999999999999999999996434577788889999988888999999999999999999999999999999999999
Q ss_pred HHhhcccCcceeeeeeccCCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccchhccccCCCCCeEEEEEEeeecCCCc
Q 007325 325 IRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVG 404 (608)
Q Consensus 325 l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~~G 404 (608)
+++++..+.++||+|+||+++.|++.|||+|++++|+|.+++...+...+.......+.|++++|++++|||+.+|++.|
T Consensus 245 l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK~~~d~~~G 324 (693)
T PRK00007 245 LRKATIANEIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGILPDGEEEEVERKASDDEPFSALAFKIMTDPFVG 324 (693)
T ss_pred HHHHHhcCcEEEEEecccccCcCHHHHHHHHHHHCCChhhcccccccCCCccccceeecCCCCCCeEEEEEEeeecCCCC
Confidence 99999999999999999999999999999999999999876543321111111344577899999999999999999999
Q ss_pred eEEEEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCeeecCCEEEEcCCCcccccceeccCCCCcccCCCCC
Q 007325 405 SLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERMDF 484 (608)
Q Consensus 405 ~la~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~GdtL~~~~~~~~l~~~~~ 484 (608)
+++|+|||||+|++||.|+|.+.++.++|++|+.+.|.++.++++|.|||||+|.|++++.+||||++...+..++++.+
T Consensus 325 ~ia~~RV~sGtl~~g~~v~~~~~~~~eki~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~GdtL~~~~~~~~l~~~~~ 404 (693)
T PRK00007 325 KLTFFRVYSGVLESGSYVLNSTKGKKERIGRILQMHANKREEIKEVRAGDIAAAVGLKDTTTGDTLCDEKNPIILESMEF 404 (693)
T ss_pred cEEEEEEeeeEEcCCCEEEeCCCCceeEeceeEEeccCCcccccccCCCcEEEEeCCccCCcCCEeeCCCCccccCCCCC
Confidence 99999999999999999999988889999999999999999999999999999999999999999998877777888889
Q ss_pred CCceEEEEEEeCCCCCHHHHHHHHHHHHHhCCeeEEEEeCCCCcEEEEeeChhhHHHHHHHHHhhcCeEEEEecceEEEE
Q 007325 485 PDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYR 564 (608)
Q Consensus 485 ~~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~vl~g~GelHLev~~~rL~~~f~vev~~s~p~V~yr 564 (608)
|.|+++++|+|.++.|.+||.+||++|++|||+|+|.+|+||||++|+||||||||+|++||+++|++++++++|+|+||
T Consensus 405 ~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~~l~g~GelHLei~~~rL~~~~~vev~~s~p~V~yr 484 (693)
T PRK00007 405 PEPVISVAVEPKTKADQEKMGIALQKLAEEDPSFRVSTDEETGQTIIAGMGELHLDIIVDRMKREFKVEANVGKPQVAYR 484 (693)
T ss_pred CCceEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEEecHHhHHHHHHHHHHHhCCeeEecCCEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeecceeEEEEEeeecCCCCeeEEEEEEEEecCCCCcceee
Q 007325 565 ESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEVQCQKNIF 606 (608)
Q Consensus 565 ETi~~~~~~~~~~~kq~gg~gq~~~v~~~~ePl~~g~g~~~~ 606 (608)
|||+++++++++|++|+||+||||+|+++++|+++|.|++|.
T Consensus 485 ETi~~~~~~~~~~~~~~gg~~~~~~v~l~~eP~~~~~~~~f~ 526 (693)
T PRK00007 485 ETIRKKVEVEGKFVKQSGGRGQYGHVVIEFEPNEPGKGYEFV 526 (693)
T ss_pred ecccCccccCcccccccCCCCceEEEEEEEEeCCCCCCcEEe
Confidence 999999998999999999999999999999999999999885
No 4
>PRK12739 elongation factor G; Reviewed
Probab=100.00 E-value=5.6e-99 Score=858.43 Aligned_cols=520 Identities=70% Similarity=1.116 Sum_probs=492.0
Q ss_pred CCCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCC
Q 007325 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (608)
Q Consensus 86 ~~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 165 (608)
+.+++|||+|+||+|+|||||+++|++.+|.+.+.+.+++|++++|+.+.|++||+|++....++.|++++++|||||||
T Consensus 4 ~~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~ 83 (691)
T PRK12739 4 PLEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGH 83 (691)
T ss_pred CccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCH
Confidence 45679999999999999999999999999988888889999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCCcHHHHHHHHHHhhCCccEEEecc
Q 007325 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLP 245 (608)
Q Consensus 166 ~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~p 245 (608)
.+|..++.++++.+|++|+|||+.+|++.+++.+|+.+...++|+++|+||+|+..+++.+.++++++.++..+.+.++|
T Consensus 84 ~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~i~~~l~~~~~~~~iP 163 (691)
T PRK12739 84 VDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGADFFRSVEQIKDRLGANAVPIQLP 163 (691)
T ss_pred HHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceeEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHHhcCCCCCHHHHHHHH
Q 007325 246 VGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLI 325 (608)
Q Consensus 246 i~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l~~~~~~~~el~~~l 325 (608)
++...+|.|++|++.++.+.|.....|..+...++|..+.+...++|.+|+|.+++.||++||+||++.+++.++++..+
T Consensus 164 is~~~~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yl~~~~~~~~~l~~~l 243 (691)
T PRK12739 164 IGAEDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAEVDEELMEKYLEGEEITEEEIKAAI 243 (691)
T ss_pred ccccccceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhhhcCHHHHHHHhccCCCCHHHHHHHH
Confidence 99999999999999999999975445667888899999998999999999999999999999999999999999999999
Q ss_pred HhhcccCcceeeeeeccCCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccchhccccCCCCCeEEEEEEeeecCCCce
Q 007325 326 RKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGS 405 (608)
Q Consensus 326 ~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~~G~ 405 (608)
++.+..+.++||+|+||++|.|++.|||+|++++|+|.+++........ ......+.|++++|++++|||+++|++.|+
T Consensus 244 ~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~-~~~~~~~~~~~~~pl~a~VfK~~~d~~~G~ 322 (691)
T PRK12739 244 RKATINMEFFPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGINPD-TEEEIERPASDDEPFAALAFKIMTDPFVGR 322 (691)
T ss_pred HHHHHcCCEEEEEeccccCCccHHHHHHHHHHHCCChhhccccccccCC-CCcceeeccCCCCCeEEEEEEeeeCCCCCe
Confidence 9999999999999999999999999999999999999876654432211 112345778999999999999999999999
Q ss_pred EEEEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCeeecCCEEEEcCCCcccccceeccCCCCcccCCCCCC
Q 007325 406 LTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERMDFP 485 (608)
Q Consensus 406 la~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~GdtL~~~~~~~~l~~~~~~ 485 (608)
++|+|||||+|++||.|+|.+.+++++|++|+.++|+++.+++++.|||||+|.|++++.+||||++...+..++++.+|
T Consensus 323 i~~~RV~sGtL~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~gdtl~~~~~~~~l~~~~~~ 402 (691)
T PRK12739 323 LTFFRVYSGVLESGSYVLNTTKGKKERIGRLLQMHANKREEIKEVYAGDIAAAVGLKDTTTGDTLCDEKAPIILESMEFP 402 (691)
T ss_pred EEEEEEeeeEEcCCCEEEeCCCCceEEecceEEEecCCcccccccCCCCEEEEeCCCcccCCCEEeCCCCccccCCCCCC
Confidence 99999999999999999999989999999999999999999999999999999999999999999988777788888999
Q ss_pred CceEEEEEEeCCCCCHHHHHHHHHHHHHhCCeeEEEEeCCCCcEEEEeeChhhHHHHHHHHHhhcCeEEEEecceEEEEE
Q 007325 486 DPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRE 565 (608)
Q Consensus 486 ~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~vl~g~GelHLev~~~rL~~~f~vev~~s~p~V~yrE 565 (608)
.|+++++|+|.++.|++||.+||++|++|||+|+|.+|+||||++|+||||||||+|++||+++|++++++++|+|+|||
T Consensus 403 ~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~il~g~GelHLei~~~rL~~~f~vev~~s~p~V~yrE 482 (691)
T PRK12739 403 EPVISLAVEPKTKADQDKMGLALQKLAEEDPTFRVETDEETGQTIISGMGELHLDIIVDRMKREFKVEANVGAPQVAYRE 482 (691)
T ss_pred CceEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEEecHHHHHHHHHHHHHHhCCeeEecCCEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecceeEEEEEeeecCCCCeeEEEEEEEEecCCCCcceee
Q 007325 566 SISKVSEVKYVHKKQSGGQGQFADITVRFEPMEVQCQKNIF 606 (608)
Q Consensus 566 Ti~~~~~~~~~~~kq~gg~gq~~~v~~~~ePl~~g~g~~~~ 606 (608)
||+++++.+++|+||+||+||||+|+++++|+++|+|++|.
T Consensus 483 ti~~~~~~~~~~~~~s~g~~~~~~v~l~~~P~~~~~~~~~~ 523 (691)
T PRK12739 483 TITKSVEAEGKYKKQSGGRGQYGDVWIEFEPNEEGKGFEFV 523 (691)
T ss_pred ccCCcccccceeccccCCCCceeEEEEEEEECCCCCCcEEE
Confidence 99999999999999999999999999999999999999985
No 5
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=100.00 E-value=8.1e-98 Score=849.50 Aligned_cols=519 Identities=64% Similarity=1.035 Sum_probs=490.0
Q ss_pred CCCCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCC
Q 007325 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG 164 (608)
Q Consensus 85 ~~~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 164 (608)
.+.+++|||+|+||+|+|||||+|+|++.+|.+.+.+.+++|++++|+.+.|++||+|++.....+.|+++++++|||||
T Consensus 5 ~~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG 84 (689)
T TIGR00484 5 TDLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPG 84 (689)
T ss_pred CccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCC
Confidence 45678999999999999999999999999999888888999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCCcHHHHHHHHHHhhCCccEEEec
Q 007325 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQL 244 (608)
Q Consensus 165 ~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~ 244 (608)
|.+|..++..+++.+|++|+|||+.+|++.+++.+|+++...++|+++|+||+|+..+++.+.+++|++.++....+.++
T Consensus 85 ~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~i 164 (689)
T TIGR00484 85 HVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGANFLRVVNQIKQRLGANAVPIQL 164 (689)
T ss_pred CcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceeEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHHhcCCCCCHHHHHHH
Q 007325 245 PVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKL 324 (608)
Q Consensus 245 pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l~~~~~~~~el~~~ 324 (608)
|++...+|.|++|++.+..++|+++ .++.+...++|+++.+.+.++|++|+|.+++.||++||+|++|+.++.+++++.
T Consensus 165 pis~~~~~~~~id~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~~~~~~l~~~ 243 (689)
T TIGR00484 165 PIGAEDNFIGVIDLVEMKAYFFNGD-KGTKAIEKEIPSDLLEQAKELRENLVEAVAEFDEELMEKYLEGEELTIEEIKNA 243 (689)
T ss_pred ccccCCCceEEEECccceEEecccC-CCceeeeccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHH
Confidence 9999999999999999999999753 578888999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccCcceeeeeeccCCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccchhccccCCCCCeEEEEEEeeecCCCc
Q 007325 325 IRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVG 404 (608)
Q Consensus 325 l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~~G 404 (608)
+++++..+.++||++|||++|.|++.|||+|++++|+|.+++...+...+ ......+.|++++|++|+|||+.+|++.|
T Consensus 244 l~~~~~~~~~~PV~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~-~~~~~~~~~~~~~~l~a~VfK~~~d~~~G 322 (689)
T TIGR00484 244 IRKGVLNCEFFPVLCGSAFKNKGVQLLLDAVVDYLPSPTDVPAIKGIDPD-TEKEIERKASDDEPFSALAFKVATDPFVG 322 (689)
T ss_pred HHHHHhcCCEEEEEeccccCCccHHHHHHHHHHHCCCchhcccccccCCC-CCceeeecCCCCCceEEEEEEeeecCCCC
Confidence 99999999999999999999999999999999999999876543322111 11234577889999999999999999999
Q ss_pred eEEEEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCeeecCCEEEEcCCCcccccceeccCCCCcccCCCCC
Q 007325 405 SLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERMDF 484 (608)
Q Consensus 405 ~la~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~GdtL~~~~~~~~l~~~~~ 484 (608)
+++|+|||||+|++||+|+|.+.++++++++|+.++|+++.+++++.|||||+|.|++++.+||||++...+..++++.+
T Consensus 323 ~i~~~RV~sGtL~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~gdtl~~~~~~~~~~~~~~ 402 (689)
T TIGR00484 323 QLTFVRVYSGVLKSGSYVKNSRKNKKERVGRLVKMHANNREEIKEVRAGDICAAIGLKDTTTGDTLCDPKIDVILERMEF 402 (689)
T ss_pred eEEEEEEEEeEEcCCCEEEeCCCCceEEecceEEeecCCcccccccCCCCEEEEcCCCCCCCCCEEeCCCCccccCCCCC
Confidence 99999999999999999999988889999999999999999999999999999999999999999998877777888889
Q ss_pred CCceEEEEEEeCCCCCHHHHHHHHHHHHHhCCeeEEEEeCCCCcEEEEeeChhhHHHHHHHHHhhcCeEEEEecceEEEE
Q 007325 485 PDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYR 564 (608)
Q Consensus 485 ~~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~vl~g~GelHLev~~~rL~~~f~vev~~s~p~V~yr 564 (608)
|+|+++++|+|.++.|.+||.+||++|++|||+|+|.+|+||||++|+||||||||+|++||+++||+++++++|+|+||
T Consensus 403 ~~Pvl~~~i~p~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~il~g~GelHLei~~~~L~~~~~vev~~~~p~V~yr 482 (689)
T TIGR00484 403 PEPVISLAVEPKTKADQEKMGIALGKLAEEDPTFRTFTDPETGQTIIAGMGELHLDIIVDRMKREFKVEANVGAPQVAYR 482 (689)
T ss_pred CCceEEEEEEECCcccHHHHHHHHHHHHHhCCEEEEEECCCCCCEEEEEeeHHHHHHHHHHHHHHhCCeeEecCCEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeecceeEEEEEeeecCCCCeeEEEEEEEEecCCCCcceee
Q 007325 565 ESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEVQCQKNIF 606 (608)
Q Consensus 565 ETi~~~~~~~~~~~kq~gg~gq~~~v~~~~ePl~~g~g~~~~ 606 (608)
|||+++++..++|++|+||+||||+|++++||++++ |++|.
T Consensus 483 Eti~~~~~~~~~~~~~~~~~~~~~~v~l~~eP~~~~-g~~~~ 523 (689)
T TIGR00484 483 ETIRSKVEVEGKHAKQSGGRGQYGHVKIRFEPLEPK-GYEFV 523 (689)
T ss_pred ecccCccccccccccccCCCCceEEEEEEEEECCCC-CcEEE
Confidence 999999998999999999999999999999999986 88874
No 6
>PRK13351 elongation factor G; Reviewed
Probab=100.00 E-value=2.8e-95 Score=830.67 Aligned_cols=519 Identities=53% Similarity=0.917 Sum_probs=488.5
Q ss_pred CCCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCC
Q 007325 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (608)
Q Consensus 86 ~~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 165 (608)
+.+++|||+|+||.|+|||||+++|++.+|.+.+.+.++.|++.+|+.+.|+++|+|+......+.|+++.+++||||||
T Consensus 4 ~~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~ 83 (687)
T PRK13351 4 PLMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGH 83 (687)
T ss_pred ccccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCc
Confidence 45678999999999999999999999999988888888889999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCCcHHHHHHHHHHhhCCccEEEecc
Q 007325 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLP 245 (608)
Q Consensus 166 ~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~p 245 (608)
.+|..++..+++.+|++|+|+|++++++.++..+|+.+...++|+++|+||+|+.++++.++++++++.++..+.++|+|
T Consensus 84 ~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~P 163 (687)
T PRK13351 84 IDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGADLFKVLEDIEERFGKRPLPLQLP 163 (687)
T ss_pred HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCeEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHHhcCCCCCHHHHHHHH
Q 007325 246 VGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLI 325 (608)
Q Consensus 246 i~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l~~~~~~~~el~~~l 325 (608)
++.+..|.|++|++.++++.|.....+..+...++|..+.+...++|.+|+|.+++.||+++|+|+++.+++.++++..+
T Consensus 164 ~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~lle~~l~~~~l~~~~l~~~~ 243 (687)
T PRK13351 164 IGSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAEFDDELLELYLEGEELSAEQLRAPL 243 (687)
T ss_pred cccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHHH
Confidence 99999999999999999999976444566778889999999999999999999999999999999999999999999999
Q ss_pred HhhcccCcceeeeeeccCCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccchhccccCCCCCeEEEEEEeeecCCCce
Q 007325 326 RKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGS 405 (608)
Q Consensus 326 ~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~~G~ 405 (608)
++++..+.++|||||||++|.|++.|||+|++++|+|.+++...... .........|++++|++++|||+..+++.|+
T Consensus 244 ~~~~~~~~~~PV~~gSA~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~--~~~~~~~~~~~~~~pl~a~VfK~~~d~~~G~ 321 (687)
T PRK13351 244 REGTRSGHLVPVLFGSALKNIGIEPLLDAVVDYLPSPLEVPPPRGSK--DNGKPVKVDPDPEKPLLALVFKVQYDPYAGK 321 (687)
T ss_pred HHHHHhCCEEEEEecccCcCccHHHHHHHHHHHCCChhhcccccccC--CCCCceeecCCCCCCeEEEEEEeeecCCCce
Confidence 99999999999999999999999999999999999998755433211 0111234678899999999999999999999
Q ss_pred EEEEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCeeecCCEEEEcCCCcccccceeccCCCCcccCCCCCC
Q 007325 406 LTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERMDFP 485 (608)
Q Consensus 406 la~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~GdtL~~~~~~~~l~~~~~~ 485 (608)
++|+|||||+|++||+|++.+.++.+++++|+.++|.++.++++|.||||++|.|++++.+||||++...+..++++.+|
T Consensus 322 i~~~RV~sGtl~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~gdtl~~~~~~~~~~~~~~~ 401 (687)
T PRK13351 322 LTYLRVYSGTLRAGSQLYNGTGGKREKVGRLFRLQGNKREEVDRAKAGDIVAVAGLKELETGDTLHDSADPVLLELLTFP 401 (687)
T ss_pred EEEEEEeEEEEcCCCEEEeCCCCCceEeeeEEEEccCCeeECCccCCCCEEEEECcccCccCCEEeCCCCccccCCCCCC
Confidence 99999999999999999999988899999999999999999999999999999999999999999988766777888899
Q ss_pred CceEEEEEEeCCCCCHHHHHHHHHHHHHhCCeeEEEEeCCCCcEEEEeeChhhHHHHHHHHHhhcCeEEEEecceEEEEE
Q 007325 486 DPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRE 565 (608)
Q Consensus 486 ~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~vl~g~GelHLev~~~rL~~~f~vev~~s~p~V~yrE 565 (608)
+|+++++|+|.++.|.+||.+||++|++|||+|+|++|+||||++|+||||||||++++||+++|++++++++|+|+|||
T Consensus 402 ~pv~~~~Iep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~ii~g~GelHLei~~~rL~~~~~vev~~~~p~V~y~E 481 (687)
T PRK13351 402 EPVVSLAVEPERRGDEQKLAEALEKLVWEDPSLRVEEDEETGQTILSGMGELHLEVALERLRREFKLEVNTGKPQVAYRE 481 (687)
T ss_pred CccEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEECCCCCCEEEEEecHHHHHHHHHHHHHHhCCceEecCCeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecceeEEEEEeeecCCCCeeEEEEEEEEecCCCCcceee
Q 007325 566 SISKVSEVKYVHKKQSGGQGQFADITVRFEPMEVQCQKNIF 606 (608)
Q Consensus 566 Ti~~~~~~~~~~~kq~gg~gq~~~v~~~~ePl~~g~g~~~~ 606 (608)
||++.++..++|+||+||+||||+|+++++|+++|+|+.|.
T Consensus 482 ti~~~~~~~~~~~~~~~~~~~~~~v~~~~ep~~~~~g~~~~ 522 (687)
T PRK13351 482 TIRKMAEGVYRHKKQFGGKGQFGEVHLRVEPLERGAGFIFV 522 (687)
T ss_pred eccccccccceeeeccCCCceEEEEEEEEEECCCCCCcEEe
Confidence 99999998999999999999999999999999999998875
No 7
>PRK12740 elongation factor G; Reviewed
Probab=100.00 E-value=3.7e-89 Score=779.25 Aligned_cols=505 Identities=57% Similarity=0.919 Sum_probs=475.9
Q ss_pred EcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchHHHHHH
Q 007325 96 MAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERA 175 (608)
Q Consensus 96 vG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~ 175 (608)
+||+|+|||||+++|++.+|.+.+.+.++.|++++|+.+.|++||+|+......+.|+++.+++||||||.+|..++..+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 69999999999999999999998888888899999999999999999999999999999999999999999999999999
Q ss_pred HHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCCcHHHHHHHHHHhhCCccEEEeccCCCCCCeeeE
Q 007325 176 LRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGV 255 (608)
Q Consensus 176 l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~ 255 (608)
++.+|++|+|+|++.+...++..+|+.+...++|+++|+||+|+..+++.++++++++.++..+.+.++|+..+..|.|+
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~l~~~l~~~~~~~~~p~~~~~~~~~~ 160 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAGADFFRVLAQLQEKLGAPVVPLQLPIGEGDDFTGV 160 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCceeEEecccCCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHHhcCCCCCHHHHHHHHHhhcccCcce
Q 007325 256 VDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFV 335 (608)
Q Consensus 256 idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l~~~~~~~~el~~~l~~~~~~~~~~ 335 (608)
+|++.++.++|+. +..+...+.|....+....+|..|+|.+++.||+++|+|+++.+++.++++..+++.+..+.++
T Consensus 161 id~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~~~l~~~~~~~~~~~~~~~~~~~ 237 (668)
T PRK12740 161 VDLLSMKAYRYDE---GGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEGEELSEEEIKAGLRKATLAGEIV 237 (668)
T ss_pred EECccceEEEecC---CCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCEE
Confidence 9999999999982 6667778888888888888999999999999999999999999999999999999999999999
Q ss_pred eeeeeccCCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccchhccccCCCCCeEEEEEEeeecCCCceEEEEEEecce
Q 007325 336 PVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGT 415 (608)
Q Consensus 336 Pv~~~SA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~~G~la~~RV~sG~ 415 (608)
|||+|||++|.|++.|||+|++++|+|.+++...+.. ........|++++|++++|||+++++++|+++|+|||||+
T Consensus 238 Pv~~gSA~~~~Gv~~LLd~i~~~lPsp~~~~~~~~~~---~~~~~~~~~~~~~~l~a~v~k~~~~~~~G~i~~~RV~sG~ 314 (668)
T PRK12740 238 PVFCGSALKNKGVQRLLDAVVDYLPSPLEVPPVDGED---GEEGAELAPDPDGPLVALVFKTMDDPFVGKLSLVRVYSGT 314 (668)
T ss_pred EEEeccccCCccHHHHHHHHHHHCCChhhcccccCCC---CccccccccCCCCCeEEEEEEeeecCCCCcEEEEEEeeeE
Confidence 9999999999999999999999999998755322110 1112335678899999999999999999999999999999
Q ss_pred eCCCCEEEeCCCCceeecceEEEeecCceeecCeeecCCEEEEcCCCcccccceeccCCCCcccCCCCCCCceEEEEEEe
Q 007325 416 LSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERMDFPDPVIKVAIEP 495 (608)
Q Consensus 416 l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~GdtL~~~~~~~~l~~~~~~~Pv~~~aiep 495 (608)
|++||.|++.++++.++|++|+.++|++..++++|.|||||+|.|++++.+||||++...+..++++.+++|+++++|+|
T Consensus 315 L~~g~~v~~~~~~~~~~i~~l~~l~g~~~~~v~~~~aGdI~~i~gl~~~~~Gdtl~~~~~~~~~~~~~~~~P~~~~~i~p 394 (668)
T PRK12740 315 LKKGDTLYNSGTGKKERVGRLYRMHGKQREEVDEAVAGDIVAVAKLKDAATGDTLCDKGDPILLEPMEFPEPVISLAIEP 394 (668)
T ss_pred EcCCCEEEeCCCCCcEEecceeeecCCCccccCccCCCCEEEEeccCccCCCCEEeCCCCccccCCCCCCCcceEEEEEE
Confidence 99999999998888899999999999999999999999999999999999999999877777888889999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhCCeeEEEEeCCCCcEEEEeeChhhHHHHHHHHHhhcCeEEEEecceEEEEEeeecceeEEE
Q 007325 496 KTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRESISKVSEVKY 575 (608)
Q Consensus 496 ~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~vl~g~GelHLev~~~rL~~~f~vev~~s~p~V~yrETi~~~~~~~~ 575 (608)
.++.|.++|.++|++|++|||+|+|..|++|||++|+|+||||||++++||+++|++++.+++|+|+|||||.+++++.+
T Consensus 395 ~~~~d~~~L~~aL~~l~~~Dpsl~v~~~~~~ge~~l~g~GelhLei~~~~L~~~~~~~v~~~~p~V~yrEti~~~~~~~~ 474 (668)
T PRK12740 395 KDKGDEEKLSEALGKLAEEDPTLRVERDEETGQTILSGMGELHLDVALERLKREYGVEVETGPPQVPYRETIRKKAEGHG 474 (668)
T ss_pred CCcchHHHHHHHHHHHHHhCCeEEEEECCCCCCEEEEEecHHHHHHHHHHHHHHhCceeEecCCeeEEeeccCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeecCCCCeeEEEEEEEEecCCCCcceee
Q 007325 576 VHKKQSGGQGQFADITVRFEPMEVQCQKNIF 606 (608)
Q Consensus 576 ~~~kq~gg~gq~~~v~~~~ePl~~g~g~~~~ 606 (608)
+|++|+||+|||++|++++||+++|+|++|.
T Consensus 475 ~~~~~~~~~~~~~~v~l~~ep~~~~~~~~f~ 505 (668)
T PRK12740 475 RHKKQSGGHGQFGDVWLEVEPLPRGEGFEFV 505 (668)
T ss_pred eeccccCCCCceEEEEEEEEECCCCCceEEe
Confidence 9999999999999999999999999999885
No 8
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=100.00 E-value=1.5e-83 Score=704.24 Aligned_cols=450 Identities=32% Similarity=0.498 Sum_probs=410.6
Q ss_pred CCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccC----CccccchhhhhhcceeEeecEEEEeecCeeEEEEeC
Q 007325 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEG----TATMDWMEQEQERGITITSAATTTYWNKHRINIIDT 162 (608)
Q Consensus 87 ~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g----~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDT 162 (608)
..++|||+|+||+|+|||||+++|++.+|.+...|.++.+ .+++|+++.|++||+|+..+...+.|+++.+++|||
T Consensus 7 ~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDT 86 (526)
T PRK00741 7 VAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDT 86 (526)
T ss_pred hhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEEC
Confidence 3578999999999999999999999999999998888632 256999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCCcHHHHHHHHHHhhCCccEEE
Q 007325 163 PGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVV 242 (608)
Q Consensus 163 PG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~ 242 (608)
|||.+|..++.++++.+|++|+|||++++++.+++.+|+.+...++|+++|+||+|+..+++.++++++++.|+..++|+
T Consensus 87 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~a~~~~~l~~i~~~l~~~~~p~ 166 (526)
T PRK00741 87 PGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGREPLELLDEIEEVLGIACAPI 166 (526)
T ss_pred CCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccccCHHHHHHHHHHHhCCCCeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHHhcCCCCCHHHHH
Q 007325 243 QLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIK 322 (608)
Q Consensus 243 ~~pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l~~~~~~~~el~ 322 (608)
++||+.+.+|+|++|++.++++.|.... |.. ..+.|.+++.||++|++|++++.+ +++.
T Consensus 167 ~~Pig~~~~f~Gvvdl~~~~~~~~~~~~-~~~------------------~~~~e~~~~~dd~lle~~l~~~~~--~~l~ 225 (526)
T PRK00741 167 TWPIGMGKRFKGVYDLYNDEVELYQPGE-GHT------------------IQEVEIIKGLDNPELDELLGEDLA--EQLR 225 (526)
T ss_pred EeccccCCceeEEEEeecceeeecccCC-CCc------------------ceeeeeccCCCHHHHHHHhcccHH--HHHH
Confidence 9999999999999999999999995321 211 134567889999999999998755 5666
Q ss_pred HHH-----------HhhcccCcceeeeeeccCCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccchhccccCCCCCeE
Q 007325 323 KLI-----------RKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFA 391 (608)
Q Consensus 323 ~~l-----------~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 391 (608)
+.+ ++++..+.++|||||||++|.||++|||+|++++|+|.++.... ....+ .+.||+
T Consensus 226 ~~lel~~~~~~~~~~~~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~P~P~~~~~~~----------~~~~~-~~~~~~ 294 (526)
T PRK00741 226 EELELVQGASNEFDLEAFLAGELTPVFFGSALNNFGVQEFLDAFVEWAPAPQPRQTDE----------REVEP-TEEKFS 294 (526)
T ss_pred HHHHhhhhcccchhHHHHhcCCeEEEEEeecccCcCHHHHHHHHHHHCCCCCcccccc----------eeecC-CCCceE
Confidence 666 88899999999999999999999999999999999998643210 11222 346799
Q ss_pred EEEEEee---ecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCeeecCCEEEEcCCCcccccc
Q 007325 392 GLAFKIM---SDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGE 468 (608)
Q Consensus 392 ~~V~K~~---~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gd 468 (608)
++|||+. .++++|+++|+|||||++++|+.|+|.++++.+|+++++.++|.++.++++|.|||||+|.|++++++||
T Consensus 295 ~~VFK~~~~m~~~~~grlafvRV~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDIv~v~~l~~~~~GD 374 (526)
T PRK00741 295 GFVFKIQANMDPKHRDRIAFVRVCSGKFEKGMKVRHVRTGKDVRISNALTFMAQDREHVEEAYAGDIIGLHNHGTIQIGD 374 (526)
T ss_pred EEEEEEEecCCCCcCceEEEEEEeccEECCCCEEEeccCCceEEecceEEEecCCceECceeCCCCEEEEECCCCCccCC
Confidence 9999998 4679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCcccCCCCCCCceEEEEEEeCCCCCHHHHHHHHHHHHHhCCeeEEEEeCCCCcEEEEeeChhhHHHHHHHHHh
Q 007325 469 TLCDADHPILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKR 548 (608)
Q Consensus 469 tL~~~~~~~~l~~~~~~~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~vl~g~GelHLev~~~rL~~ 548 (608)
|||+.+ +..++++++|+|+++++|+|+++.|.+||.+||++|++||| +++.+|++|+|++|+|||||||||+++||++
T Consensus 375 TL~~~~-~~~~~~i~~~~P~~~~~v~p~~~~d~~kl~~aL~~L~eED~-l~~~~~~~t~e~il~g~G~lhleV~~~RL~~ 452 (526)
T PRK00741 375 TFTQGE-KLKFTGIPNFAPELFRRVRLKNPLKQKQLQKGLVQLSEEGA-VQVFRPLDNNDLILGAVGQLQFEVVAHRLKN 452 (526)
T ss_pred CccCCC-ccccCCCCCCCccEEEEEEECCchhHHHHHHHHHHHhhcCC-eEEEECCCCCCEEEEEEeHHHHHHHHHHHHH
Confidence 999866 67788999999999999999999999999999999999995 9999999999999999999999999999999
Q ss_pred hcCeEEEEecceEEEEEeeecc
Q 007325 549 EFKVEANVGAPQVNYRESISKV 570 (608)
Q Consensus 549 ~f~vev~~s~p~V~yrETi~~~ 570 (608)
+||+++.+++|+|++-.-|...
T Consensus 453 ey~v~v~~~~~~v~~~rw~~~~ 474 (526)
T PRK00741 453 EYNVEAIYEPVGVATARWVECD 474 (526)
T ss_pred HhCCEEEEecCCccEEEEEeCC
Confidence 9999999999999999888643
No 9
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=100.00 E-value=1.4e-83 Score=743.00 Aligned_cols=499 Identities=29% Similarity=0.416 Sum_probs=419.0
Q ss_pred CCCCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeec-----------
Q 007325 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN----------- 153 (608)
Q Consensus 85 ~~~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~----------- 153 (608)
..++++|||||+||+|||||||+++|++.+|.+... ...+++++|+.+.|++||+|++++..++.|.
T Consensus 14 ~~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~--~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~ 91 (843)
T PLN00116 14 DKKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE--VAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKG 91 (843)
T ss_pred hCccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccc--cCCceeeccCcHHHHHhCCceecceeEEEeeccccccccccc
Confidence 456789999999999999999999999999987653 3445567999999999999999999999884
Q ss_pred -----CeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcC-------C
Q 007325 154 -----KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL-------G 221 (608)
Q Consensus 154 -----~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~-------~ 221 (608)
++.+||||||||.||..++..+++.+|++|+|||+.+|++.||+.+|+++...++|+++|+||||+. .
T Consensus 92 ~~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~~~~~~~~~ 171 (843)
T PLN00116 92 ERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDG 171 (843)
T ss_pred ccCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCcccchhhcCCH
Confidence 6889999999999999999999999999999999999999999999999999999999999999998 3
Q ss_pred ----CcHHHHHHHHH---HhhCCccE-EEec-cCCC----------------------CCCeeeEEecccceeE---Eec
Q 007325 222 ----ANFFRTRDMIV---TNLGAKPL-VVQL-PVGA----------------------EDNFKGVVDLVKMKAI---IWS 267 (608)
Q Consensus 222 ----~~~~~~~~~i~---~~l~~~~~-~~~~-pi~~----------------------~~~~~g~idl~~~~~~---~~~ 267 (608)
+++.+++++++ ..++.... ++++ |++. ..+|.+.+|++..+.| +|+
T Consensus 172 ~~~~~~~~~vi~~in~~~~~~~~~~~~~~~~~P~~~nv~F~s~~~~~~~~l~~~~~~y~~~~~~~~~~l~~~lwg~~~~~ 251 (843)
T PLN00116 172 EEAYQTFSRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFD 251 (843)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccCceEEccCCCeeeeeecccCEEEEhHHHHHHHHHHhCCcHHHHHHHhhccceEc
Confidence 67889999998 22221111 2233 5544 2333444455555545 554
Q ss_pred CcCCCceeeeec--CcHhH---HHHHHHHHHHHHHHHHhhcHHHHHHHhcC--CCCCHHHHHHHHHhhcccCcceeeeee
Q 007325 268 GEELGAKFAYED--IPANL---QKMAQEYRSQMIETIVELDDEAMESYLEG--NEPDEETIKKLIRKGTIAGSFVPVLCG 340 (608)
Q Consensus 268 ~~~~g~~~~~~~--~~~~~---~~~~~~~r~~l~e~~~~~dd~l~e~~l~~--~~~~~~el~~~l~~~~~~~~~~Pv~~~ 340 (608)
++ +..+...+ .+... .+.+.+.+.+++|.+++.||++|++|+++ ..++.++++. +++.+....+.|+|++
T Consensus 252 ~~--~~~~~~~~~~~~~~~~~f~~~il~~~~~l~e~v~~~d~~lle~~l~~~~~~l~~~el~~-~~~~l~~~~~~pv~~~ 328 (843)
T PLN00116 252 PA--TKKWTTKNTGSPTCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLEKLGVTLKSDEKEL-MGKALMKRVMQTWLPA 328 (843)
T ss_pred CC--CceEEecCCCCchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCCCCCHHHHhh-hhHHHHHHHHHhhcCC
Confidence 32 44444444 33222 22334589999999999999999999986 5799999988 9999999999999987
Q ss_pred ccCCCCChHHHHHHHHHhCCCCCCCCCCCCC-----CCCCccchhccccCCCCCeEEEEEEeeecCCCce-EEEEEEecc
Q 007325 341 SAFKNKGVQPLLDAVVDYLPSPLDLPAMKGT-----DPENPEATLERAASDDEPFAGLAFKIMSDPFVGS-LTFVRVYAG 414 (608)
Q Consensus 341 SA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~-----~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~~G~-la~~RV~sG 414 (608)
| +.|||+|++++|+|.+++..+.. ............|++++|++++|||+..+++.|+ ++|+|||||
T Consensus 329 s-------~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RVysG 401 (843)
T PLN00116 329 S-------DALLEMIIFHLPSPAKAQRYRVENLYEGPLDDKYATAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSG 401 (843)
T ss_pred h-------HHHHHHHHHhCCChHHhhhHHhhhccCCCCCccccchhhcCCCCCCeEEEEEeeeecCCCCeEEEEEEEEee
Confidence 6 89999999999999865432110 0011222456788999999999999999988887 999999999
Q ss_pred eeCCCCEEE----eCCCCce-----eecceEEEeecCceeecCeeecCCEEEEcCCCcccc-cceeccCC--CCcccCCC
Q 007325 415 TLSAGSYVL----NANKGKK-----ERIGRLLEMHANSREDVKVALAGDIIALAGLKDTIT-GETLCDAD--HPILLERM 482 (608)
Q Consensus 415 ~l~~g~~v~----~~~~~~~-----~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~-GdtL~~~~--~~~~l~~~ 482 (608)
+|++||.|+ |...++. ++|++|+.++|++++++++|.|||||+|.|++++.+ ||||++.. .+..++++
T Consensus 402 tL~~g~~v~v~~~n~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~AGdI~ai~gl~~~~~~gdTL~~~~~~~~~~l~~~ 481 (843)
T PLN00116 402 TVATGMKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQESVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIKAM 481 (843)
T ss_pred eecCCCEEEEeCCCCCCCCccccceeEhheEEEecCCCceECcEECCCCEEEEEeecccccCCceecCCcccCCcccccc
Confidence 999999998 4544433 589999999999999999999999999999998655 99999876 56777888
Q ss_pred CCC-CceEEEEEEeCCCCCHHHHHHHHHHHHHhCCeeEEEEeCCCCcEEEEeeChhhHHHHHHHHHhhc--CeEEEEecc
Q 007325 483 DFP-DPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREF--KVEANVGAP 559 (608)
Q Consensus 483 ~~~-~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~vl~g~GelHLev~~~rL~~~f--~vev~~s~p 559 (608)
.+| +|+++++|+|.++.|++||.+||++|++|||+|++.. +||||++|+||||+|||+|++||+++| ||++++++|
T Consensus 482 ~~~~~Pv~~~aIeP~~~~d~~kL~~aL~~L~~eDPsl~v~~-~etge~il~g~GElHLEi~~~rL~~~f~~~vev~~s~p 560 (843)
T PLN00116 482 KFSVSPVVRVAVQCKNASDLPKLVEGLKRLAKSDPMVQCTI-EESGEHIIAGAGELHLEICLKDLQDDFMGGAEIKVSDP 560 (843)
T ss_pred ccCCCceEEEEEEECChhhHHHHHHHHHHHHHhCCCeEEEE-cCCCCEEEEEccHHHHHHHHHHHHHHhhCCCcEEEcCC
Confidence 888 9999999999999999999999999999999999864 899999999999999999999999999 999999999
Q ss_pred eEEEEEeeecceeEEEEEeeecCCCCeeEEEEEEEEecCCC
Q 007325 560 QVNYRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEVQ 600 (608)
Q Consensus 560 ~V~yrETi~~~~~~~~~~~kq~gg~gq~~~v~~~~ePl~~g 600 (608)
+|+|||||.++++.++++ +| +||||+|+++++|+++|
T Consensus 561 ~V~yrETI~~~~~~~~~~-~~---~~~~~~v~l~iePl~~~ 597 (843)
T PLN00116 561 VVSFRETVLEKSCRTVMS-KS---PNKHNRLYMEARPLEEG 597 (843)
T ss_pred eEEEEecccccccCcEEE-ec---CCceEEEEEEEEECCHH
Confidence 999999999998888884 46 67889999999999987
No 10
>PTZ00416 elongation factor 2; Provisional
Probab=100.00 E-value=3.5e-83 Score=738.21 Aligned_cols=493 Identities=29% Similarity=0.464 Sum_probs=424.7
Q ss_pred CCCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCC-ccccchhhhhhcceeEeecEEEEeec----------C
Q 007325 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGT-ATMDWMEQEQERGITITSAATTTYWN----------K 154 (608)
Q Consensus 86 ~~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~-~~~d~~~~e~~~giTi~~~~~~~~~~----------~ 154 (608)
..+++|||+|+||+|||||||+++|++.+|.+.+. ..|+ +++|+.+.|++||+|++++...+.|. +
T Consensus 15 ~~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~---~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~ 91 (836)
T PTZ00416 15 NPDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSK---NAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQP 91 (836)
T ss_pred CccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccc---cCCceeecccchhhHhhcceeeccceEEEeecccccccCCCc
Confidence 35789999999999999999999999999877654 3344 45999999999999999999999886 6
Q ss_pred eeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcC----C-------Cc
Q 007325 155 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL----G-------AN 223 (608)
Q Consensus 155 ~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~----~-------~~ 223 (608)
+.++|+|||||.+|..++..+++.+|++|+|||+.+|++.|++.+|+++...++|+++|+||||+. + ++
T Consensus 92 ~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~~~~~ 171 (836)
T PTZ00416 92 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRAILELQLDPEEIYQN 171 (836)
T ss_pred eEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhhhhhcCCCHHHHHHH
Confidence 789999999999999999999999999999999999999999999999999999999999999998 4 77
Q ss_pred HHHHHHHHHHhhC-----------CccEEEeccCCCCC----------------CeeeEEecccceeE---EecCcCCCc
Q 007325 224 FFRTRDMIVTNLG-----------AKPLVVQLPVGAED----------------NFKGVVDLVKMKAI---IWSGEELGA 273 (608)
Q Consensus 224 ~~~~~~~i~~~l~-----------~~~~~~~~pi~~~~----------------~~~g~idl~~~~~~---~~~~~~~g~ 273 (608)
+.++++++++.++ ..+.+.++|++.+. +|...+|.+....| +|++. +.
T Consensus 172 ~~~ii~~in~~l~~~~~~~~~~~~~~p~~~~vp~~s~~~~~~f~~~~F~~~y~~~~~~~~~~l~~~~wg~~~~~~~--~~ 249 (836)
T PTZ00416 172 FVKTIENVNVIIATYNDELMGDVQVYPEKGTVAFGSGLQGWAFTLTTFARIYAKKFGVEESKMMERLWGDNFFDAK--TK 249 (836)
T ss_pred HHHHHHHHHHHHHhcccccccceecceeccEEEEEeccccceeehHHhhhhhhhhcCCcHHHHHHHHhccccccCC--CC
Confidence 8999999998765 37788899998765 33333455555555 55432 44
Q ss_pred eeeeec-------CcHhHHHHHHHHHHHHHHHHHhhcHHHHHHHhc--CCCCCHHHH--HH-HHHhhcccCcceeeeeec
Q 007325 274 KFAYED-------IPANLQKMAQEYRSQMIETIVELDDEAMESYLE--GNEPDEETI--KK-LIRKGTIAGSFVPVLCGS 341 (608)
Q Consensus 274 ~~~~~~-------~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l~--~~~~~~~el--~~-~l~~~~~~~~~~Pv~~~S 341 (608)
.+...+ +|..+.+.+.+.+++|+|.+++.||++|++|++ |.+++.+++ .. .+.+.+. +.|+|+
T Consensus 250 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~e~~~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~~~-~~~~Pv---- 324 (836)
T PTZ00416 250 KWIKDETNAQGKKLKRAFCQFILDPICQLFDAVMNEDKEKYDKMLKSLNISLTGEDKELTGKPLLKAVM-QKWLPA---- 324 (836)
T ss_pred EEEeccCCccccccchHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCcChHHhccChHHHHHHHH-HHHhch----
Confidence 444443 344566788889999999999999999999999 778998884 23 5666666 899998
Q ss_pred cCCCCChHHHHHHHHHhCCCCCCCCCCCCC-----CCCCccchhccccCCCCCeEEEEEEeeecCCCce-EEEEEEecce
Q 007325 342 AFKNKGVQPLLDAVVDYLPSPLDLPAMKGT-----DPENPEATLERAASDDEPFAGLAFKIMSDPFVGS-LTFVRVYAGT 415 (608)
Q Consensus 342 A~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~-----~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~~G~-la~~RV~sG~ 415 (608)
++.|||+|++++|+|.+++..... ..+.+.....+.|++++|++++|||+..+++.|+ ++|+|||||+
T Consensus 325 ------~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~plva~VfK~~~~~~~g~~~s~~RV~SGt 398 (836)
T PTZ00416 325 ------ADTLLEMIVDHLPSPKEAQKYRVENLYEGPMDDEAANAIRNCDPNGPLMMYISKMVPTSDKGRFYAFGRVFSGT 398 (836)
T ss_pred ------HHHHHHHHHHhCCChhHhCchhhhccccCCCCccccceeeccCCCCCeEEEEEeeeecCCCCcEEEEEEEEeee
Confidence 799999999999999875432110 0011122346788999999999999999999998 8999999999
Q ss_pred eCCCCEEE----eCCCCcee-----ecceEEEeecCceeecCeeecCCEEEEcCCCc--ccccceeccCCCCcccCCCCC
Q 007325 416 LSAGSYVL----NANKGKKE-----RIGRLLEMHANSREDVKVALAGDIIALAGLKD--TITGETLCDADHPILLERMDF 484 (608)
Q Consensus 416 l~~g~~v~----~~~~~~~~-----ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~--~~~GdtL~~~~~~~~l~~~~~ 484 (608)
|+.||.|+ |.+.+.++ +|++||.++|++..++++|.|||||+|.|+++ +.+| ||++...+..+.++.+
T Consensus 399 L~~g~~v~v~~~~~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~v~AGdI~~i~gl~~~~~~tg-TL~~~~~~~~l~~i~~ 477 (836)
T PTZ00416 399 VATGQKVRIQGPNYVPGKKEDLFEKNIQRTVLMMGRYVEQIEDVPCGNTVGLVGVDQYLVKSG-TITTSETAHNIRDMKY 477 (836)
T ss_pred ecCCCEEEEeCCCCCCCCcccchheecceeEEecCCCceECcEECCCCEEEEEecccceecce-eecCCCCccccccccc
Confidence 99999998 44444444 59999999999999999999999999999998 7899 9998877777888888
Q ss_pred C-CceEEEEEEeCCCCCHHHHHHHHHHHHHhCCeeEEEEeCCCCcEEEEeeChhhHHHHHHHHHhhc-CeEEEEecceEE
Q 007325 485 P-DPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREF-KVEANVGAPQVN 562 (608)
Q Consensus 485 ~-~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~vl~g~GelHLev~~~rL~~~f-~vev~~s~p~V~ 562 (608)
+ +|+++++|+|.++.|++||.+||++|.+|||++.+.. +||||++|+||||+|||+|++||+++| +|++++++|+|+
T Consensus 478 ~~~Pv~~vaIep~~~~d~~kL~~aL~~L~~eDPsl~~~~-~etgE~il~g~GElHLei~l~~L~~~f~~vev~~s~P~V~ 556 (836)
T PTZ00416 478 SVSPVVRVAVEPKNPKDLPKLVEGLKRLAKSDPLVVCTT-EESGEHIVAGCGELHVEICLKDLEDDYANIDIIVSDPVVS 556 (836)
T ss_pred CCCCeEEEEEEECCHHHHHHHHHHHHHHHhhCCceEEEE-cCCCCeEEEeCcHhHHHHHHHHHHHHhcCcceEecCCEEE
Confidence 6 9999999999999999999999999999999999965 899999999999999999999999999 999999999999
Q ss_pred EEEeeecceeEEEEEeeecCCCCeeEEEEEEEEecCCC
Q 007325 563 YRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEVQ 600 (608)
Q Consensus 563 yrETi~~~~~~~~~~~kq~gg~gq~~~v~~~~ePl~~g 600 (608)
|||||+++++.+++|++|+|+ ++|++++||+++|
T Consensus 557 yrETI~~~s~~~~~~~~~~~~----~~v~~~~ePl~~~ 590 (836)
T PTZ00416 557 YRETVTEESSQTCLSKSPNKH----NRLYMKAEPLTEE 590 (836)
T ss_pred EEEEecccccceEEEECCCCC----eeEEEEEEECCHH
Confidence 999999999999999999876 3999999999987
No 11
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7e-86 Score=659.79 Aligned_cols=498 Identities=41% Similarity=0.674 Sum_probs=453.0
Q ss_pred CCCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCC
Q 007325 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (608)
Q Consensus 86 ~~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 165 (608)
+..++|||+|+.|.++||||..++++|.+|.+...|.+++|.+++|++..|++||||+++...++.|+++++|+||||||
T Consensus 33 ~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpgh 112 (753)
T KOG0464|consen 33 AIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGH 112 (753)
T ss_pred chhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCCcHHHHHHHHHHhhCCccEEEecc
Q 007325 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLP 245 (608)
Q Consensus 166 ~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~p 245 (608)
+||.-++++++++.|++|.|+|++.|+++||..+|+++.+.++|.++|+||||+..++|+..++++++.+|..++.+++|
T Consensus 113 vdf~leverclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~anfe~avdsi~ekl~ak~l~l~lp 192 (753)
T KOG0464|consen 113 VDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLAANFENAVDSIEEKLGAKALKLQLP 192 (753)
T ss_pred ceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhhhhhhhhHHHHHHHHhCCceEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCe-eeEEecccceeEEec-CcCCCceeeeecC----cHhHHHHHHHHHHHHHHHHHhhcHHHHHHHhcC-----C
Q 007325 246 VGAEDNF-KGVVDLVKMKAIIWS-GEELGAKFAYEDI----PANLQKMAQEYRSQMIETIVELDDEAMESYLEG-----N 314 (608)
Q Consensus 246 i~~~~~~-~g~idl~~~~~~~~~-~~~~g~~~~~~~~----~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l~~-----~ 314 (608)
+++...| +|++|++..+.+.|. ++++|..|...++ +.++.+...+.+.+|+|.+++.|+++.+++++. +
T Consensus 193 i~eak~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~ndpel~e~~ae~knal~~qlad~~~dfad~~ldef~~n~d 272 (753)
T KOG0464|consen 193 IGEAKGFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKNDPELAEELAEAKNALCEQLADLDADFADKFLDEFDENFD 272 (753)
T ss_pred ccccccccchHHHHHHHhhccCCCCCCccccccCCcccccCCHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhcccc
Confidence 9999999 799999988888884 4557887876653 457788888999999999999999999988873 5
Q ss_pred CCCHHHHHHHHHhhcccCcceeeeeeccCCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccchhccccCCCCCeEEEE
Q 007325 315 EPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLA 394 (608)
Q Consensus 315 ~~~~~el~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V 394 (608)
.++.+++...+++.+...+..||+||||.+|.||++|||++.-|+|+|.++..... . =.+..++++.
T Consensus 273 ~i~a~elksai~~lt~aq~a~~i~cgsaiknkgiqplldavtmylpspeernyefl---------q----wykddlcala 339 (753)
T KOG0464|consen 273 KIDAEELKSAIHELTCAQKAAPILCGSAIKNKGIQPLLDAVTMYLPSPEERNYEFL---------Q----WYKDDLCALA 339 (753)
T ss_pred ccCHHHHHHHHHHHhhhhhhcceehhhhhcccCccchhhhhhhccCChhhcchHHH---------h----hhhhhHHHHh
Confidence 68999999999999999999999999999999999999999999999988643110 0 1245678899
Q ss_pred EEeeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCeeecCCEEEEcCCCcccccceeccCC
Q 007325 395 FKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDAD 474 (608)
Q Consensus 395 ~K~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~GdtL~~~~ 474 (608)
||+.+|+.+|.++|.|||||+++.+-.++|.+....+.+.+++.+.+++..+|+++.||+|...+||+.+.||||+.+..
T Consensus 340 fkvlhdkqrg~l~fmriysgsi~~~~ai~nin~~~se~~~kl~~pfade~~~i~qlsagnialt~glk~tatgdtivask 419 (753)
T KOG0464|consen 340 FKVLHDKQRGPLSFMRIYSGSIHNNLAIFNINGMCSEGILKLFLPFADEHREIEQLSAGNIALTAGLKHTATGDTIVASK 419 (753)
T ss_pred hhhhcccccCceeEEEEecccccCceeeeecccccccchHhhhccchhhhhhhhhcccccEEEEecceeeccCCeEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999996432
Q ss_pred ------------------------CCcccCCCCCCCceEEEEEEeCCCCCHHHHHHHHHHHHHhCCeeEEEEeCCCCcEE
Q 007325 475 ------------------------HPILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTV 530 (608)
Q Consensus 475 ------------------------~~~~l~~~~~~~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~v 530 (608)
....+.+++.|.||+++.|||.+...++.+..||+-|.+||||++++.|+++||++
T Consensus 420 asa~aa~qk~~~egekk~~q~~daerll~agie~pd~vffc~iepps~~k~~d~ehale~lqredpslkir~d~dsgqti 499 (753)
T KOG0464|consen 420 ASAEAAAQKAAGEGEKKHLQNKDAERLLFAGIEIPDAVFFCCIEPPSLRKLNDFEHALECLQREDPSLKIRFDPDSGQTI 499 (753)
T ss_pred hhHHHHHHHhhccchhhccCCccccceeeecccCCCceEEEeccCcccccchhHHHHHHHHhccCCceeEEecCCCCceE
Confidence 12347788999999999999999999999999999999999999999999999999
Q ss_pred EEeeChhhHHHHHHHHHhhcCeEEEEecceEEEEEeeecceeEEEEEeeecCCCCe--eEEEEEEEEe
Q 007325 531 IEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRESISKVSEVKYVHKKQSGGQGQ--FADITVRFEP 596 (608)
Q Consensus 531 l~g~GelHLev~~~rL~~~f~vev~~s~p~V~yrETi~~~~~~~~~~~kq~gg~gq--~~~v~~~~eP 596 (608)
+.||||||+|++.+|++|+||.++-+++.+|+|||+|.+...+..+.....|-..+ |.++..|.+|
T Consensus 500 l~~~gelhie~ihdrikrey~ldtfig~lqvayre~i~~~lr~t~~ld~~lgdkk~~~~velear~~~ 567 (753)
T KOG0464|consen 500 LCGMGELHIEAIHDRIKREYGLDTFIGKLQVAYREMILEELRATAKLDDGLGDKKHLEFVELEARLEE 567 (753)
T ss_pred EeccchhhHHHHHHHHHhhcCchheehhHHHHHHHHHHHHhhhhhhhhccccccccceEEEEEeeecc
Confidence 99999999999999999999999999999999999999887665555444444444 4455545444
No 12
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=100.00 E-value=1.6e-79 Score=672.62 Aligned_cols=449 Identities=29% Similarity=0.459 Sum_probs=396.4
Q ss_pred CCCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeec-cC---CccccchhhhhhcceeEeecEEEEeecCeeEEEEe
Q 007325 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVH-EG---TATMDWMEQEQERGITITSAATTTYWNKHRINIID 161 (608)
Q Consensus 86 ~~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~-~g---~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liD 161 (608)
...++|||+|+||+|+|||||+++|++.+|.+...|.++ .| .+++|+++.|++||+|+.++...+.|+++++++||
T Consensus 7 ~~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliD 86 (527)
T TIGR00503 7 EVDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLD 86 (527)
T ss_pred hhccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEE
Confidence 346789999999999999999999999999999888886 33 38899999999999999999999999999999999
Q ss_pred CCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCCcHHHHHHHHHHhhCCccEE
Q 007325 162 TPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLV 241 (608)
Q Consensus 162 TPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~ 241 (608)
||||.+|..++.++++.+|++|+|||++.++..+++.+|+.+...++|+++|+||+|+..+++.+++++|++.++..+.+
T Consensus 87 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~~~~~~ll~~i~~~l~~~~~~ 166 (527)
T TIGR00503 87 TPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDIRDPLELLDEVENELKINCAP 166 (527)
T ss_pred CCChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccCCCHHHHHHHHHHHhCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCCCCeeeEEecccceeEEecCcCCCceeeee------cCcHh----HHHHHHHHHHHHHHHHHhhcHHHHHHHh
Q 007325 242 VQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYE------DIPAN----LQKMAQEYRSQMIETIVELDDEAMESYL 311 (608)
Q Consensus 242 ~~~pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~------~~~~~----~~~~~~~~r~~l~e~~~~~dd~l~e~~l 311 (608)
.++||+.+..|.|++|++.++++.|.....++ .... ..|.. ..+..+++|+.+ |.+++.++
T Consensus 167 ~~~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~-~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~l-e~~~~~~~------- 237 (527)
T TIGR00503 167 ITWPIGCGKLFKGVYHLLKDETYLYQSGTGGT-IQAVRQVKGLNNPALDSAVGSDLAQQLRDEL-ELVEGASN------- 237 (527)
T ss_pred EEEEecCCCceeEEEEcccCcceecCccCCCc-eeEeehhccCCChhhhhhhhHHHHHHHHHHH-HHHhhhcc-------
Confidence 99999999999999999999999996532232 2222 11211 122344555555 66665553
Q ss_pred cCCCCCHHHHHHHHHhhcccCcceeeeeeccCCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccchhccccCCCCCeE
Q 007325 312 EGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFA 391 (608)
Q Consensus 312 ~~~~~~~~el~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 391 (608)
+++ ++++..+.++|||||||++|.||+.|||+|++++|+|.++.... ..+.+ .++||+
T Consensus 238 ---~~~--------~~~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~PsP~~~~~~~----------~~~~~-~~~~~~ 295 (527)
T TIGR00503 238 ---EFD--------LAAFHGGEMTPVFFGTALGNFGVDHFLDGLLQWAPKPEARQSDT----------RTVEP-TEEKFS 295 (527)
T ss_pred ---ccC--------HHHHhcCCeeEEEEeecccCccHHHHHHHHHHHCCCCccccCCc----------eecCC-CCCCee
Confidence 223 35667789999999999999999999999999999998643210 11222 467899
Q ss_pred EEEEEeee--c-CCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCeeecCCEEEEcCCCcccccc
Q 007325 392 GLAFKIMS--D-PFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGE 468 (608)
Q Consensus 392 ~~V~K~~~--d-~~~G~la~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gd 468 (608)
++|||+.. | +++|+++|+|||||+|++|++|+|.++++++++++++.++|.+++++++|.|||||++.|++++++||
T Consensus 296 ~~VFK~~~~mdp~~~griaf~RV~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDI~~~~~~~~~~~GD 375 (527)
T TIGR00503 296 GFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLKHVRTGKDVVISDALTFMAGDREHVEEAYAGDIIGLHNHGTIQIGD 375 (527)
T ss_pred EEEEEEEeccCcccCceEEEEEEeeeEEcCCCEEEecCCCCcEEecchhhhhcCCceEcceeCCCCEEEEECCCCcccCC
Confidence 99999998 8 59999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCcccCCCCCCCceEEEEEEeCCCCCHHHHHHHHHHHHHhCCeeEEEEeCCCCcEEEEeeChhhHHHHHHHHHh
Q 007325 469 TLCDADHPILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKR 548 (608)
Q Consensus 469 tL~~~~~~~~l~~~~~~~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~vl~g~GelHLev~~~rL~~ 548 (608)
|||+. .+..++++++|.|+++++|+|+++.|++||.+||++|++||| +++.+|++|+|++|+|||||||||+++||++
T Consensus 376 tl~~~-~~~~~~~i~~~~P~~~~~v~~~~~~d~~kl~~aL~~L~eED~-l~v~~~~~t~e~il~g~GelhleV~~~RL~~ 453 (527)
T TIGR00503 376 TFTQG-EKIKFTGIPNFAPELFRRIRLKDPLKQKQLLKGLVQLSEEGA-VQVFRPLDNNDLIVGAVGVLQFDVVVYRLKE 453 (527)
T ss_pred EecCC-CceeecCCCCCCcceEEEEEECChhhHHHHHHHHHHHHhhCC-eEEEEcCCCCCEEEEEEeHHHHHHHHHHHHH
Confidence 99984 467788899999999999999999999999999999999998 9999999999999999999999999999999
Q ss_pred hcCeEEEEecceEEEEEee
Q 007325 549 EFKVEANVGAPQVNYRESI 567 (608)
Q Consensus 549 ~f~vev~~s~p~V~yrETi 567 (608)
+|||++.+++|+|+.--=|
T Consensus 454 ey~v~v~~~~~~v~~~rw~ 472 (527)
T TIGR00503 454 EYNVEARYEPVNVATARWV 472 (527)
T ss_pred HhCCeEEEeCCCceEEEEE
Confidence 9999999999999864433
No 13
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=100.00 E-value=1.4e-76 Score=676.07 Aligned_cols=461 Identities=33% Similarity=0.469 Sum_probs=386.7
Q ss_pred CCCCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEE----EeecCeeEEEE
Q 007325 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATT----TYWNKHRINII 160 (608)
Q Consensus 85 ~~~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~----~~~~~~~i~li 160 (608)
...+++|||+|+||.|+|||||+++|++.+|.+.+. ...+++++|+.+.|++||+|+.....+ +.|++++++||
T Consensus 14 ~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~--~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~li 91 (720)
T TIGR00490 14 WKPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEE--LAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLI 91 (720)
T ss_pred hCcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchh--cCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEE
Confidence 345678999999999999999999999999987663 333456799999999999999988765 56788999999
Q ss_pred eCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCCcHHHHHHHHHHhhCCccE
Q 007325 161 DTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPL 240 (608)
Q Consensus 161 DTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~ 240 (608)
|||||.+|..++..+++.+|++|+|+|+.+|+..+++.+|+.+...++|+++|+||+|+..++++..++++++.|+..+.
T Consensus 92 DTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~~~~~~~~~~~ 171 (720)
T TIGR00490 92 DTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLINELKLTPQELQERFIKIIT 171 (720)
T ss_pred eCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhcccchhcCCHHHHHHHHhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998876444
Q ss_pred EEeccCCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHHhc--------
Q 007325 241 VVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLE-------- 312 (608)
Q Consensus 241 ~~~~pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l~-------- 312 (608)
.++.++... .++++ +..+.+..++.++.+++.|++
T Consensus 172 ~v~~~~~~~------------------------------~~~~~-------~~~~~~~~~~~~~~f~s~~~~~~~~~~~~ 214 (720)
T TIGR00490 172 EVNKLIKAM------------------------------APEEF-------RDKWKVRVEDGSVAFGSAYYNWAISVPSM 214 (720)
T ss_pred HHHhhhhcc------------------------------CCHHH-------hhceEechhhCCHHHHhhhhcccccchhH
Confidence 333332110 01100 011233344455566666655
Q ss_pred -CCCCCHHHHHHHHHhhcccC--cceeeeeeccCCCCChHHHHHHHHHhCCCCCCCCCCCCC-----CCCCccchhcccc
Q 007325 313 -GNEPDEETIKKLIRKGTIAG--SFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGT-----DPENPEATLERAA 384 (608)
Q Consensus 313 -~~~~~~~el~~~l~~~~~~~--~~~Pv~~~SA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~-----~~~~~~~~~~~~~ 384 (608)
+..++.+++.+.+.+..... .++|| ++.|||+|++++|+|.+++..... ..++........|
T Consensus 215 ~~~~~~~~~l~~~~~~~~~~~~~~~~Pv----------~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (720)
T TIGR00490 215 KKTGIGFKDIYKYCKEDKQKELAKKSPL----------HQVVLDMVIRHLPSPIEAQKYRIPVIWKGDLNSEVGKAMLNC 284 (720)
T ss_pred hhcCCCHHHHHHHHHhccHHHHhhhhhH----------HHHHHHHHHHhCCChhhhhhhcccccccCCCCccchhhcccC
Confidence 45566666666665544443 58888 489999999999999865422100 1011122346788
Q ss_pred CCCCCeEEEEEEeeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCeeecCCEEEEcCCCcc
Q 007325 385 SDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDT 464 (608)
Q Consensus 385 ~~~~p~~~~V~K~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~ 464 (608)
++++|++++|||+..+++.|+++|+|||||+|++||.|++.+.++.++|++|+.++|.+..++++|.|||||+|.|++++
T Consensus 285 d~~~pl~a~VfK~~~~~~~G~ia~~RV~sGtL~~G~~l~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~ 364 (720)
T TIGR00490 285 DPKGPLALMITKIVVDKHAGEVAVGRLYSGTIRPGMEVYIVDRKAKARIQQVGVYMGPERVEVDEIPAGNIVAVIGLKDA 364 (720)
T ss_pred CCCCCeEEEEEEEEecCCCcEEEEEEEEeCEEcCCCEEEEcCCCCeeEeeEEEEeccCCccCccEECCCCEEEEECcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeccCCCC-cccCCC-CCCCceEEEEEEeCCCCCHHHHHHHHHHHHHhCCeeEEEEeCCCCcEEEEeeChhhHHHH
Q 007325 465 ITGETLCDADHP-ILLERM-DFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEII 542 (608)
Q Consensus 465 ~~GdtL~~~~~~-~~l~~~-~~~~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~vl~g~GelHLev~ 542 (608)
.+|||||+.+.+ ..++++ .+|+|+++++|+|.++.|++||.++|++|++|||+|++.+|+||||++|+||||+|||++
T Consensus 365 ~~GdtL~~~~~~~~~~~~~~~~~~Pv~~~~i~p~~~~d~~kL~~aL~~L~~eDPsl~v~~d~etge~il~g~GElHLei~ 444 (720)
T TIGR00490 365 VAGETICTTVENITPFESIKHISEPVVTVAIEAKNTKDLPKLIEVLRQVAKEDPTVHVEINEETGEHLISGMGELHLEII 444 (720)
T ss_pred ccCceeecCCcccccCcccccCCCceEEEEEEECCHHHHHHHHHHHHHHHhhCCeEEEEECCCCCCeEEEEccceeHHHH
Confidence 999999987644 345655 478999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCeEEEEecceEEEEEeeeccee-EEEEEeeecCCCCeeEEEEEEEEecCCC
Q 007325 543 VDRLKREFKVEANVGAPQVNYRESISKVSE-VKYVHKKQSGGQGQFADITVRFEPMEVQ 600 (608)
Q Consensus 543 ~~rL~~~f~vev~~s~p~V~yrETi~~~~~-~~~~~~kq~gg~gq~~~v~~~~ePl~~g 600 (608)
++||+++||+++.+++|+|+|||||++.++ ++++| .||||+|+|++||+++|
T Consensus 445 ~~rL~~~~~vev~~~~P~V~YrETi~~~~~~~~~~~------~~~~~~v~l~iePl~~~ 497 (720)
T TIGR00490 445 VEKIREDYGLDVETSPPIVVYRETVTGTSPVVEGKS------PNKHNRFYIVVEPLEES 497 (720)
T ss_pred HHHHHHHhCCceeecCCEEEEEEeccccccceEEEc------CCCcEEEEEEEEECCcc
Confidence 999999999999999999999999999988 67666 24789999999999998
No 14
>PRK07560 elongation factor EF-2; Reviewed
Probab=100.00 E-value=2.3e-75 Score=667.80 Aligned_cols=438 Identities=35% Similarity=0.514 Sum_probs=364.4
Q ss_pred CCCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEee----cCeeEEEEe
Q 007325 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW----NKHRINIID 161 (608)
Q Consensus 86 ~~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~----~~~~i~liD 161 (608)
..+++|||+|+||.|||||||+++|++.+|.+.+. ...+++++|+.+.|++||+|++++..++.| +++.++|||
T Consensus 16 ~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~--~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liD 93 (731)
T PRK07560 16 NPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEE--LAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLID 93 (731)
T ss_pred chhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchh--hcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEc
Confidence 45789999999999999999999999999987763 234467899999999999999999998887 478999999
Q ss_pred CCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCCcHHHHHHHHHHhhCCccEE
Q 007325 162 TPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLV 241 (608)
Q Consensus 162 TPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~ 241 (608)
||||.+|..++.++++.+|++|+|||+.+|++.+++.+|+++.+.++|.|+|+||+|+..+++....+++++.++.
T Consensus 94 tPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~~~~~~~~~~~~~~~~~~---- 169 (731)
T PRK07560 94 TPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRLIKELKLTPQEMQQRLLK---- 169 (731)
T ss_pred CCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhhcccccCCHHHHHHHHHH----
Confidence 9999999999999999999999999999999999999999999999999999999999888766665555554421
Q ss_pred EeccCCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHHhcCCCCCHHHH
Q 007325 242 VQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETI 321 (608)
Q Consensus 242 ~~~pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l~~~~~~~~el 321 (608)
.+.+.+ .++++|.+ +++
T Consensus 170 --------------------------------------------------------~~~e~~-~~l~~~~~------~~~ 186 (731)
T PRK07560 170 --------------------------------------------------------IIKDVN-KLIKGMAP------EEF 186 (731)
T ss_pred --------------------------------------------------------HHHHHH-HHHHHhhh------hhh
Confidence 111121 33333332 011
Q ss_pred HHHHHhhcccCcceeeeeeccCCCCChH----------------------------------HHHHHHHHhCCCCCCCCC
Q 007325 322 KKLIRKGTIAGSFVPVLCGSAFKNKGVQ----------------------------------PLLDAVVDYLPSPLDLPA 367 (608)
Q Consensus 322 ~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~----------------------------------~Lld~i~~~lP~p~~~~~ 367 (608)
...+......+ .|+++||+.+.|+. .|||+|++++|+|.+++.
T Consensus 187 ~~~~~~~~~~~---~v~~~sa~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~~l~~~~Pv~~~Lld~I~~~lPsP~~~~~ 263 (731)
T PRK07560 187 KEKWKVDVEDG---TVAFGSALYNWAISVPMMQKTGIKFKDIIDYYEKGKQKELAEKAPLHEVVLDMVVKHLPNPIEAQK 263 (731)
T ss_pred hcceeecCCCC---cEeeeecccccceeHHHHHHhCCCHHHHHHHHhcCCHHHHHhhccchhHHHHHHHHhCCChhhhhh
Confidence 00000000001 24455665555543 899999999999987543
Q ss_pred CCCC-----CCCCccchhccccCCCCCeEEEEEEeeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeecC
Q 007325 368 MKGT-----DPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHAN 442 (608)
Q Consensus 368 ~~~~-----~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~ 442 (608)
.+.. ...+........|++++|++++|||+..|++.|+++|+|||||+|++||.|++.+.+.+++|++|+.++|+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~d~~~G~va~~RV~sGtL~~Gd~v~~~~~~~~~~v~~i~~~~g~ 343 (731)
T PRK07560 264 YRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVTDIIVDPHAGEVATGRVFSGTLRKGQEVYLVGAKKKNRVQQVGIYMGP 343 (731)
T ss_pred hcccccccCCCCccccceeeccCCCCCEEEEEEeeEEcCCCCeEEEEEEEEeEEcCCCEEEEcCCCCceEeheehhhhcC
Confidence 2110 00111123456788999999999999999999999999999999999999999998888999999999999
Q ss_pred ceeecCeeecCCEEEEcCCCcccccceeccCCCCcccCCC-CCCCceEEEEEEeCCCCCHHHHHHHHHHHHHhCCeeEEE
Q 007325 443 SREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERM-DFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFS 521 (608)
Q Consensus 443 ~~~~v~~a~aGdIv~i~gl~~~~~GdtL~~~~~~~~l~~~-~~~~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDPsl~v~ 521 (608)
+..++++|.|||||+|.|++++.+||||++.....++.++ .+|+|+++++|+|.++.|++||.+||++|++|||+|+|.
T Consensus 344 ~~~~v~~a~AGdIv~i~gl~~~~~GdtL~~~~~~~~~~~~~~~p~Pv~~~aI~p~~~~d~~kL~~aL~~L~~eDPsl~v~ 423 (731)
T PRK07560 344 EREEVEEIPAGNIAAVTGLKDARAGETVVSVEDMTPFESLKHISEPVVTVAIEAKNPKDLPKLIEVLRQLAKEDPTLVVK 423 (731)
T ss_pred CCceeeeECCCCEEEEEcccccccCCEEeCCCccccccccccCCCCeEEEEEEECCHHHHHHHHHHHHHHHhhCCcEEEE
Confidence 9999999999999999999999999999988777777786 488999999999999999999999999999999999999
Q ss_pred EeCCCCcEEEEeeChhhHHHHHHHHHhhcCeEEEEecceEEEEEeeeccee-EEEEEeeecCCCCeeEEEEEEEEecCCC
Q 007325 522 RDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRESISKVSE-VKYVHKKQSGGQGQFADITVRFEPMEVQ 600 (608)
Q Consensus 522 ~~~etge~vl~g~GelHLev~~~rL~~~f~vev~~s~p~V~yrETi~~~~~-~~~~~~kq~gg~gq~~~v~~~~ePl~~g 600 (608)
+|++|||++|+||||+|||++++||+++|++++.+++|+|+|||||.++++ ++++ ++ |+|++|+|+++|+|+|
T Consensus 424 ~~~etge~~l~g~GElHLei~~~rL~~~~~vev~~~~p~V~yrETI~~~~~~~~~~----~~--~~~~~v~l~iePl~~~ 497 (731)
T PRK07560 424 INEETGEHLLSGMGELHLEVITYRIKRDYGIEVVTSEPIVVYRETVRGKSQVVEGK----SP--NKHNRFYISVEPLEEE 497 (731)
T ss_pred EcCCCCCeEEEcCCHHHHHHHHHHHHHHhCCceEecCCEEEEEEecccCccceEEE----CC--CCceEEEEEEEECCHH
Confidence 999999999999999999999999999999999999999999999999974 4433 44 4589999999999987
Q ss_pred C
Q 007325 601 C 601 (608)
Q Consensus 601 ~ 601 (608)
.
T Consensus 498 ~ 498 (731)
T PRK07560 498 V 498 (731)
T ss_pred H
Confidence 4
No 15
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=100.00 E-value=1.2e-67 Score=585.79 Aligned_cols=367 Identities=34% Similarity=0.531 Sum_probs=332.5
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCch
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~ 169 (608)
+|||+|+||+|||||||+++|++.+|.+...+.+++ +++|+++.|++||+|+.+....+.|++++++|||||||.||.
T Consensus 1 iRNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~--~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~ 78 (594)
T TIGR01394 1 IRNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAE--RVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFG 78 (594)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhcCCCccccccee--ecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHH
Confidence 689999999999999999999999998877766654 689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCCcHHHHHHHHHHhhCCccEEEeccCCCC
Q 007325 170 LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAE 249 (608)
Q Consensus 170 ~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~pi~~~ 249 (608)
.++.++++.+|++|+|||+.+|++.|++.+|+.+...++|+++|+||+|+..++++++++++.+.+...
T Consensus 79 ~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~----------- 147 (594)
T TIGR01394 79 GEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVDEVFDLFAEL----------- 147 (594)
T ss_pred HHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhh-----------
Confidence 999999999999999999999999999999999999999999999999998887777777776654210
Q ss_pred CCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHHhcCCCCCHHHHHHHHHhhc
Q 007325 250 DNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGT 329 (608)
Q Consensus 250 ~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l~~~~~~~~el~~~l~~~~ 329 (608)
|. + .+
T Consensus 148 ----------------------g~-----------------------------~--------------~e---------- 152 (594)
T TIGR01394 148 ----------------------GA-----------------------------D--------------DE---------- 152 (594)
T ss_pred ----------------------cc-----------------------------c--------------cc----------
Confidence 00 0 00
Q ss_pred ccCcceeeeeeccCCCC----------ChHHHHHHHHHhCCCCCCCCCCCCCCCCCccchhccccCCCCCeEEEEEEeee
Q 007325 330 IAGSFVPVLCGSAFKNK----------GVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMS 399 (608)
Q Consensus 330 ~~~~~~Pv~~~SA~~~~----------Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~ 399 (608)
...+|++++||++|. |+++||+.|.+++|+|.. ++++||+++||++++
T Consensus 153 --~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~~--------------------~~~~pl~~~V~~i~~ 210 (594)
T TIGR01394 153 --QLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPKG--------------------DLDEPLQMLVTNLDY 210 (594)
T ss_pred --cccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCCC--------------------CCCCCEEEEEEEEEe
Confidence 012589999999996 899999999999999953 247899999999999
Q ss_pred cCCCceEEEEEEecceeCCCCEEEeCCCC---ceeecceEEEeecCceeecCeeecCCEEEEcCCCcccccceeccCCCC
Q 007325 400 DPFVGSLTFVRVYAGTLSAGSYVLNANKG---KKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHP 476 (608)
Q Consensus 400 d~~~G~la~~RV~sG~l~~g~~v~~~~~~---~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~GdtL~~~~~~ 476 (608)
++++|+++++||+||+|++||.|++.+.+ ..++|++|+.+.|.++.++++|.|||||+|.|++++.+|||||+++.+
T Consensus 211 d~~~Grv~~gRV~sG~lk~G~~V~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGDiv~i~gl~~i~~Gdtl~~~~~~ 290 (594)
T TIGR01394 211 DEYLGRIAIGRVHRGTVKKGQQVALMKRDGTIENGRISKLLGFEGLERVEIDEAGAGDIVAVAGLEDINIGETIADPEVP 290 (594)
T ss_pred eCCCceEEEEEEEeCEEccCCEEEEecCCCceeEEEEEEEEEccCCCceECCEECCCCEEEEeCCcccCCCCEEeCCCcc
Confidence 99999999999999999999999988753 257999999999999999999999999999999999999999999988
Q ss_pred cccCCCCCCCceEEEEEEeCCC---CCHHH------HHHHHHHHHHhCCeeEEEEeCCCCcEEEEeeChhhHHHHHHHHH
Q 007325 477 ILLERMDFPDPVIKVAIEPKTK---ADIDK------MANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLK 547 (608)
Q Consensus 477 ~~l~~~~~~~Pv~~~aiep~~~---~d~~k------L~~aL~~L~~eDPsl~v~~~~etge~vl~g~GelHLev~~~rL~ 547 (608)
.+++++.+++|+++++++|.+. +++.| |.++|.++.++||+|+|+.++++++++|+|+|||||+|++++|+
T Consensus 291 ~~l~~~~~~~P~~~~~~~~~~~p~~~~e~k~~t~~~l~~~L~k~~~~d~sl~v~~~~~~~~~~v~g~GelHL~il~e~lr 370 (594)
T TIGR01394 291 EALPTITVDEPTLSMTFSVNDSPLAGKEGKKVTSRHIRDRLMRELETNVALRVEDTESADKFEVSGRGELHLSILIETMR 370 (594)
T ss_pred ccCCCCCCCCCeEEEEEEecCCCcccccchhhhHHHHHHHHHHhhccCCeEEEEEecCCCeEEEEEECHHHHHHHHHHHh
Confidence 8999999999999999999865 44444 99999999999999999999999999999999999999999999
Q ss_pred hhcCeEEEEecceEEEEEeee
Q 007325 548 REFKVEANVGAPQVNYRESIS 568 (608)
Q Consensus 548 ~~f~vev~~s~p~V~yrETi~ 568 (608)
|+ |+|+.+++|+|+||| |.
T Consensus 371 re-g~e~~~~~P~V~yre-i~ 389 (594)
T TIGR01394 371 RE-GFELQVGRPQVIYKE-ID 389 (594)
T ss_pred cc-CceEEEeCCEEEEEe-CC
Confidence 99 999999999999999 54
No 16
>PRK10218 GTP-binding protein; Provisional
Probab=100.00 E-value=4.7e-67 Score=579.83 Aligned_cols=368 Identities=31% Similarity=0.485 Sum_probs=333.4
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 167 (608)
+++|||+|+||+|||||||+++|++.+|.+...+... .+++|+.+.|+++|+|+......+.|+++.+++||||||.+
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~--~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~d 80 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQ--ERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHAD 80 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccc--eeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcch
Confidence 5789999999999999999999998888776644332 38999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCCcHHHHHHHHHHhhCCccEEEeccCC
Q 007325 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVG 247 (608)
Q Consensus 168 f~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~pi~ 247 (608)
|..++..+++.+|++|+|||+.+|++.+++.+|+.+...++|.++|+||+|+..++++++++++++.|..-
T Consensus 81 f~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l--------- 151 (607)
T PRK10218 81 FGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNL--------- 151 (607)
T ss_pred hHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCchhHHHHHHHHHHhcc---------
Confidence 99999999999999999999999999999999999999999999999999999998888888887765310
Q ss_pred CCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHHhcCCCCCHHHHHHHHHh
Q 007325 248 AEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRK 327 (608)
Q Consensus 248 ~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l~~~~~~~~el~~~l~~ 327 (608)
+. .
T Consensus 152 ---------~~----------------------------------------------------------~---------- 154 (607)
T PRK10218 152 ---------DA----------------------------------------------------------T---------- 154 (607)
T ss_pred ---------Cc----------------------------------------------------------c----------
Confidence 00 0
Q ss_pred hcccCcceeeeeeccCCCC----------ChHHHHHHHHHhCCCCCCCCCCCCCCCCCccchhccccCCCCCeEEEEEEe
Q 007325 328 GTIAGSFVPVLCGSAFKNK----------GVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKI 397 (608)
Q Consensus 328 ~~~~~~~~Pv~~~SA~~~~----------Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~ 397 (608)
....-+||+++||++|. |+..|||+|.+++|+|.. ++++||.++|||+
T Consensus 155 --~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~~--------------------~~~~Pl~~~V~k~ 212 (607)
T PRK10218 155 --DEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPDV--------------------DLDGPFQMQISQL 212 (607)
T ss_pred --ccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCCC--------------------CCCCCeEEEEEee
Confidence 00011699999999998 699999999999999953 2478999999999
Q ss_pred eecCCCceEEEEEEecceeCCCCEEEeCCC-Cc--eeecceEEEeecCceeecCeeecCCEEEEcCCCcccccceeccCC
Q 007325 398 MSDPFVGSLTFVRVYAGTLSAGSYVLNANK-GK--KERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDAD 474 (608)
Q Consensus 398 ~~d~~~G~la~~RV~sG~l~~g~~v~~~~~-~~--~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~GdtL~~~~ 474 (608)
++++++|+++++||++|+|++||.|++.+. ++ .++|++|+.+.|.++.++++|.|||||+|.|++++.+|||||+..
T Consensus 213 ~~d~~~G~i~~gRV~sG~lk~Gd~v~~~~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~GdTl~~~~ 292 (607)
T PRK10218 213 DYNSYVGVIGIGRIKRGKVKPNQQVTIIDSEGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGELNISDTVCDTQ 292 (607)
T ss_pred EecCCCcEEEEEEEEeCcCcCCCEEEEecCCCcEeeEEEEEEEEEecCCceECCEEcCCCEEEEECccccccCcEEecCC
Confidence 999999999999999999999999998765 44 689999999999999999999999999999999999999999988
Q ss_pred CCcccCCCCCCCceEEEEEEeCC---CCCHHHHHH---HHHHHHH---hCCeeEEEEeCCCCcEEEEeeChhhHHHHHHH
Q 007325 475 HPILLERMDFPDPVIKVAIEPKT---KADIDKMAN---GLIKLAQ---EDPSFHFSRDEEINQTVIEGMGELHLEIIVDR 545 (608)
Q Consensus 475 ~~~~l~~~~~~~Pv~~~aiep~~---~~d~~kL~~---aL~~L~~---eDPsl~v~~~~etge~vl~g~GelHLev~~~r 545 (608)
.+..++++++++|++++++.|.+ .+|+.|+.+ +|.+|.+ +||+|+|+.+++|+|++|+|+|||||+|++++
T Consensus 293 ~~~~l~~~~~~~P~~~~~~~~~~sp~~g~e~k~~t~~~~~~rL~~~~~~D~sl~v~~~~~~~~~~v~g~GelHL~il~e~ 372 (607)
T PRK10218 293 NVEALPALSVDEPTVSMFFCVNTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETEDADAFRVSGRGELHLSVLIEN 372 (607)
T ss_pred CcccCCCCCCCCCeEEEEEEeCCCccccchhhhhhHHHHHHHHHHhhCCCCeEEEEEcCCCCeEEEEEEcHHHHHHHHHH
Confidence 88889999999999999999999 789999866 6666666 89999999999999999999999999999999
Q ss_pred HHhhcCeEEEEecceEEEEEe
Q 007325 546 LKREFKVEANVGAPQVNYRES 566 (608)
Q Consensus 546 L~~~f~vev~~s~p~V~yrET 566 (608)
|+|+ |+|+.+++|+|+||||
T Consensus 373 lrre-g~e~~~~~P~V~yret 392 (607)
T PRK10218 373 MRRE-GFELAVSRPKVIFREI 392 (607)
T ss_pred HHhC-CceEEEeCCEEEEEEE
Confidence 9999 9999999999999998
No 17
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-68 Score=545.28 Aligned_cols=491 Identities=29% Similarity=0.408 Sum_probs=383.9
Q ss_pred CCCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEee-------------
Q 007325 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW------------- 152 (608)
Q Consensus 86 ~~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~------------- 152 (608)
...++||+.++.|.+||||||++.|+..+|.+... -..+++++|..+.|++|||||++..+++.+
T Consensus 15 k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~a--kaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~ 92 (842)
T KOG0469|consen 15 KKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAA--KAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQE 92 (842)
T ss_pred cccccccceEEEEecCCcchhhHHHHHhhceeeec--ccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCC
Confidence 45679999999999999999999999888876532 134568999999999999999999999865
Q ss_pred ---cCeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCCc----HH
Q 007325 153 ---NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGAN----FF 225 (608)
Q Consensus 153 ---~~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~----~~ 225 (608)
+++.|||||.|||.||++++..++|+.|++++|||+.+|++.||+.+++++...++..++|+||+|+.-.+ .+
T Consensus 93 ~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~DRAlLELq~~~E 172 (842)
T KOG0469|consen 93 GDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKMDRALLELQLSQE 172 (842)
T ss_pred CCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccceEEeehhhHHHHhhcCCHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999985433 22
Q ss_pred HHHHHHHHhhC-CccEEEeccCCCCCCeeeEEecccce-eEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhc
Q 007325 226 RTRDMIVTNLG-AKPLVVQLPVGAEDNFKGVVDLVKMK-AIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELD 303 (608)
Q Consensus 226 ~~~~~i~~~l~-~~~~~~~~pi~~~~~~~g~idl~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~d 303 (608)
+..+.++.... .+.+...+ ++.--|.+.+...+ .+.|.+.-+||.|+...|...|.+++.....+|+..+|...
T Consensus 173 eLyqtf~R~VE~vNviisTy----~d~~~g~~~v~P~kg~v~F~SGLhGWaFTlrQFa~~Y~~KF~~~~~kmm~~LWg~~ 248 (842)
T KOG0469|consen 173 ELYQTFQRIVENVNVIISTY----GDGPMGDVQVDPEKGTVGFGSGLHGWAFTLRQFAEMYAKKFGIDVRKMMNRLWGDN 248 (842)
T ss_pred HHHHHHHHHHhcccEEEEec----ccCCcCceEecCCCCceeeccccchhhhhHHHHHHHHHHHhCCcHHHHHHHhhccc
Confidence 22232322221 12221111 11122333344333 46777777899999999999999988777777777666310
Q ss_pred --HH-------------------------------HHHHHhcCCCCCHHHHHHHHHhhc------------------ccC
Q 007325 304 --DE-------------------------------AMESYLEGNEPDEETIKKLIRKGT------------------IAG 332 (608)
Q Consensus 304 --d~-------------------------------l~e~~l~~~~~~~~el~~~l~~~~------------------~~~ 332 (608)
+. +.+..+ ....+|+...+.+.- .+.
T Consensus 249 ~f~~ktkk~~~s~t~~~gn~~~r~F~~~iLdPIykvfdaim---N~kkeei~~llekl~v~lk~~~kd~eGK~LlK~vMr 325 (842)
T KOG0469|consen 249 FFNPKTKKWSKSATDAEGNPLRRAFCMFILDPIYKVFDAIM---NFKKEEIATLLEKLEVTLKGDEKDLEGKALLKVVMR 325 (842)
T ss_pred ccCccCCcccccccccccCccccceeEEeechHHHHHHHHh---hccHHHHHHHHHHhcceeccccccccchHHHHHHHH
Confidence 00 000000 012233332222211 123
Q ss_pred cceeeeeeccCCCCChHHHHHHHHHhCCCCCCCCCCCCC-----CCCCccchhccccCCCCCeEEEEEEeeecCCC-ceE
Q 007325 333 SFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGT-----DPENPEATLERAASDDEPFAGLAFKIMSDPFV-GSL 406 (608)
Q Consensus 333 ~~~Pv~~~SA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~-----~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~~-G~l 406 (608)
+|+|. -+.||++|.-+||||..++.++.. +.++.....+..||+++|+++||.|+...... .++
T Consensus 326 ~wLPA----------adallemIalhLPSPvtaQkyR~e~LYEGP~DDe~a~aik~CD~~aplmmYvSKMvPtsDkgRFy 395 (842)
T KOG0469|consen 326 KWLPA----------ADALLEMIALHLPSPVTAQKYRAEYLYEGPADDEAAVAIKNCDPKAPLMMYVSKMVPTSDKGRFY 395 (842)
T ss_pred Hhcch----------HHHHHHHHHhhCCCchHHHHHHHHHhhcCCCchHHhhHhhccCCCCCeEEeeeeccccCCCceEE
Confidence 45554 378999999999999998876522 22234456778999999999999999865554 469
Q ss_pred EEEEEecceeCCCCEEEeC----CCCcee-----ecceEEEeecCceeecCeeecCCEEEEcCCCc-ccccceeccCCCC
Q 007325 407 TFVRVYAGTLSAGSYVLNA----NKGKKE-----RIGRLLEMHANSREDVKVALAGDIIALAGLKD-TITGETLCDADHP 476 (608)
Q Consensus 407 a~~RV~sG~l~~g~~v~~~----~~~~~~-----ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~-~~~GdtL~~~~~~ 476 (608)
||+|||||++..|+++++. ..|+++ .|.+...|+|+..++|+.++||+|+++.|+++ +.++.||+..+..
T Consensus 396 AFGRVFsG~v~~G~KvRiqgPnY~PGkkedl~~K~iqRtvlMMGr~vepied~PaGNIiGlvGvDqfLvKtGTiTt~e~A 475 (842)
T KOG0469|consen 396 AFGRVFSGKVFTGLKVRIQGPNYVPGKKEDLYIKAIQRTVLMMGRFVEPIEDCPAGNIIGLVGVDQFLVKTGTITTSEAA 475 (842)
T ss_pred EEeeeecceeccCcEEEEeCCCCCCCcHHHHHHHHHHHHHHHhcccccccccCCCCcEEEEeehhHhhhccCceeehhhh
Confidence 9999999999999999954 344443 36777789999999999999999999999998 4456688877777
Q ss_pred cccCCCCCC-CceEEEEEEeCCCCCHHHHHHHHHHHHHhCCeeEEEEeCCCCcEEEEeeChhhHHHHHHHHHhhc-CeEE
Q 007325 477 ILLERMDFP-DPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREF-KVEA 554 (608)
Q Consensus 477 ~~l~~~~~~-~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~vl~g~GelHLev~~~rL~~~f-~vev 554 (608)
..++.++|. .|++++|||++++.|++||.++|++|+++||.+.+.+ +|+||++|.|.||||||||+.+|++.| +|.+
T Consensus 476 HNmrvMKFSVSPVV~VAVe~Knp~DLpKLvEGLkrLakSDP~v~~~~-~esGehiiAgaGeLHLEICLkDLeedhA~iPl 554 (842)
T KOG0469|consen 476 HNMRVMKFSVSPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCII-EESGEHIIAGAGELHLEICLKDLEEDHACIPL 554 (842)
T ss_pred ccceEEEeeccceEEEEEecCChhhhHHHHHHHHHHhccCCeEEEEe-ccCCceEEeccchhhHHHHHhhHhhcccCCce
Confidence 778888877 8999999999999999999999999999999999998 579999999999999999999999999 8999
Q ss_pred EEecceEEEEEeeecceeEEEEEeeecCCCCeeEEEEEEEEecCCC
Q 007325 555 NVGAPQVNYRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEVQ 600 (608)
Q Consensus 555 ~~s~p~V~yrETi~~~~~~~~~~~kq~gg~gq~~~v~~~~ePl~~g 600 (608)
+.++|.|.|||||.+++....-.| ..+.+.++++..||++.|
T Consensus 555 k~sdPvVsYrEtvs~~ss~~~lsK----SpNKHNRi~mtaeP~~~~ 596 (842)
T KOG0469|consen 555 KKSDPVVSYRETVSEESSQTCLSK----SPNKHNRIYMTAEPMDDG 596 (842)
T ss_pred ecCCCeeeeecccccccchhhhcc----CCcccceeEEecccCCch
Confidence 999999999999998876543333 256678999999999876
No 18
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.7e-66 Score=525.64 Aligned_cols=452 Identities=30% Similarity=0.488 Sum_probs=380.0
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccC----CccccchhhhhhcceeEeecEEEEeecCeeEEEEeCC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEG----TATMDWMEQEQERGITITSAATTTYWNKHRINIIDTP 163 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g----~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTP 163 (608)
.+.|+.|||.||++|||||++.||...|++...|.+... .+.+||++.|++|||++.+++..+.|+++.+||+|||
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP 89 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP 89 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCC
Confidence 456899999999999999999999999999988887432 3789999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCCcHHHHHHHHHHhhCCccEEEe
Q 007325 164 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQ 243 (608)
Q Consensus 164 G~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ 243 (608)
||.||+..+.+.|..+|.||.||||..|+++||+.+++.++..++|++-|+||+|+..-+.-+++++|.+.|++.+.|+.
T Consensus 90 GHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~~~Pit 169 (528)
T COG4108 90 GHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGRDPLELLDEIEEELGIQCAPIT 169 (528)
T ss_pred CccccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeeccccccCChHHHHHHHHHHhCcceeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCeeeEEecccceeEEecCcCCCceeeee---cCcH-hHHHHH-HHHHHHHHHHHHhhcHHHHHHHhcCCCCCH
Q 007325 244 LPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYE---DIPA-NLQKMA-QEYRSQMIETIVELDDEAMESYLEGNEPDE 318 (608)
Q Consensus 244 ~pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~---~~~~-~~~~~~-~~~r~~l~e~~~~~dd~l~e~~l~~~~~~~ 318 (608)
||||.++.|+|++|+.+.....|.+...+...... .+.. ++.... ...++.+.|.+ +|+.. .+.+.+.
T Consensus 170 WPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~-----EL~~~--a~~~Fd~ 242 (528)
T COG4108 170 WPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREEL-----ELVQG--AGNEFDL 242 (528)
T ss_pred ccccCCcccceeeeeccCEEEEeccCCCccccccccccCCCChhHHhhhchHHHHHHHHHH-----HHHHh--hccccCH
Confidence 99999999999999999988888764332222211 1111 111111 11112222211 11110 0122222
Q ss_pred HHHHHHHHhhcccCcceeeeeeccCCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccchhccccCCCCCeEEEEEEee
Q 007325 319 ETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIM 398 (608)
Q Consensus 319 ~el~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~ 398 (608)
..+..|...|||+|||++|.||+.+|+.++++.|+|..+....+. ..+ .+..|.++|||+.
T Consensus 243 --------~~fl~G~~TPVFFGSAl~NFGV~~~L~~~~~~AP~P~~~~a~~~~----------v~p-~e~kfsGFVFKIQ 303 (528)
T COG4108 243 --------EAFLAGELTPVFFGSALGNFGVDHFLDALVDWAPSPRARQADTRE----------VEP-TEDKFSGFVFKIQ 303 (528)
T ss_pred --------HHHhcCCccceEehhhhhccCHHHHHHHHHhhCCCCCcccCCcCc----------ccC-CCCccceEEEEEE
Confidence 245567889999999999999999999999999999876542211 111 2345999999997
Q ss_pred e---cCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCeeecCCEEEEcCCCcccccceeccCCC
Q 007325 399 S---DPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADH 475 (608)
Q Consensus 399 ~---d~~~G~la~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~GdtL~~~~~ 475 (608)
. ..++.++||.||.||++.+|+++...++|+..+++.-..+++.+++.+++|.||||++|.+-..++.|||++.. .
T Consensus 304 ANMDp~HRDRIAFmRv~SGkferGMkv~h~rtGK~~~ls~~~~f~A~dRe~ve~A~aGDIIGl~nhG~~~IGDT~t~G-e 382 (528)
T COG4108 304 ANMDPKHRDRIAFMRVCSGKFERGMKVTHVRTGKDVKLSDALTFMAQDRETVEEAYAGDIIGLHNHGTIQIGDTFTEG-E 382 (528)
T ss_pred cCCCcccccceeEEEeccccccCCceeeeeecCCceEecchHhhhhhhhhhhhhccCCCeEeccCCCceeecceeecC-c
Confidence 5 35678999999999999999999999999999999999999999999999999999999888789999999986 6
Q ss_pred CcccCCCCCCCceEEEEEEeCCCCCHHHHHHHHHHHHHhCCeeEEEEeCCCCcEEEEeeChhhHHHHHHHHHhhcCeEEE
Q 007325 476 PILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEAN 555 (608)
Q Consensus 476 ~~~l~~~~~~~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~vl~g~GelHLev~~~rL~~~f~vev~ 555 (608)
...+.+++...|-++..|..+++....+|.+||.+|++|- .+++.....++++++...|.||+||+.+||+.+|++++.
T Consensus 383 ~l~f~giP~FaPE~frrvr~kd~~K~Kql~Kgl~QL~eEG-avQ~f~p~~~~d~IlGAVG~LQFeV~~~RL~~EY~ve~~ 461 (528)
T COG4108 383 KLKFTGIPNFAPELFRRVRLKDPLKQKQLKKGLEQLAEEG-AVQVFKPLDGNDLILGAVGQLQFEVVQARLKNEYNVEAV 461 (528)
T ss_pred eeeecCCCCCCHHHHHHHhcCChHHHHHHHHHHHHHhhcC-eeEEEecCCCCCceEEeeeeeehHHHHHHHHhhhCCeEE
Confidence 7788999988999999999999999999999999999999 677777677899999999999999999999999999999
Q ss_pred EecceEEEEEee
Q 007325 556 VGAPQVNYRESI 567 (608)
Q Consensus 556 ~s~p~V~yrETi 567 (608)
+.+..+..--=|
T Consensus 462 ~e~~~~~~aRWi 473 (528)
T COG4108 462 FEPVNFSTARWI 473 (528)
T ss_pred EeeccceEEEEe
Confidence 987665544333
No 19
>PRK05433 GTP-binding protein LepA; Provisional
Probab=100.00 E-value=3.5e-65 Score=568.12 Aligned_cols=363 Identities=31% Similarity=0.464 Sum_probs=325.3
Q ss_pred CCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeec-----CeeEEEEe
Q 007325 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-----KHRINIID 161 (608)
Q Consensus 87 ~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~-----~~~i~liD 161 (608)
.+++|||+|+||.|||||||+++|++.+|.+...+ .+++++|+++.|++||+|+......+.|. ++.++|||
T Consensus 4 ~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~---~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiD 80 (600)
T PRK05433 4 MKNIRNFSIIAHIDHGKSTLADRLIELTGTLSERE---MKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLID 80 (600)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccc---cccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEE
Confidence 46789999999999999999999999988776532 36789999999999999999999999885 68899999
Q ss_pred CCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCCcHHHHHHHHHHhhCCccEE
Q 007325 162 TPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLV 241 (608)
Q Consensus 162 TPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~ 241 (608)
||||.+|..++.++++.+|++|+|||++++++.++...|..+...++|+++|+||+|+..++..++.+++++.++..
T Consensus 81 TPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~--- 157 (600)
T PRK05433 81 TPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPERVKQEIEDVIGID--- 157 (600)
T ss_pred CCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHHHHhCCC---
Confidence 99999999999999999999999999999999999999998888899999999999997665554444444332210
Q ss_pred EeccCCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHHhcCCCCCHHHH
Q 007325 242 VQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETI 321 (608)
Q Consensus 242 ~~~pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l~~~~~~~~el 321 (608)
T Consensus 158 -------------------------------------------------------------------------------- 157 (600)
T PRK05433 158 -------------------------------------------------------------------------------- 157 (600)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhcccCcceeeeeeccCCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccchhccccCCCCCeEEEEEEeeecC
Q 007325 322 KKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDP 401 (608)
Q Consensus 322 ~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~ 401 (608)
..+++++||++|.|+++|+++|.+.+|+|.. ++++|+.++||++++|+
T Consensus 158 ------------~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~~--------------------~~~~pl~~~Vfd~~~d~ 205 (600)
T PRK05433 158 ------------ASDAVLVSAKTGIGIEEVLEAIVERIPPPKG--------------------DPDAPLKALIFDSWYDN 205 (600)
T ss_pred ------------cceEEEEecCCCCCHHHHHHHHHHhCccccC--------------------CCCCCceEEEEEEEecC
Confidence 0137889999999999999999999999864 24789999999999999
Q ss_pred CCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCeeecCCEEEEc-C---CCcccccceeccCCCC-
Q 007325 402 FVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALA-G---LKDTITGETLCDADHP- 476 (608)
Q Consensus 402 ~~G~la~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~-g---l~~~~~GdtL~~~~~~- 476 (608)
++|.++++||++|+|++||.|++.+++..++|++|+.+.+ +..+++++.||||+++. | ++++++||||++...+
T Consensus 206 ~~G~v~~~rV~sG~Lk~Gd~i~~~~~~~~~~V~~i~~~~~-~~~~v~~~~aGdIg~i~~~ik~~~~~~~Gdtl~~~~~~~ 284 (600)
T PRK05433 206 YRGVVVLVRVVDGTLKKGDKIKMMSTGKEYEVDEVGVFTP-KMVPVDELSAGEVGYIIAGIKDVRDARVGDTITLAKNPA 284 (600)
T ss_pred CCceEEEEEEEcCEEecCCEEEEecCCceEEEEEeeccCC-CceECcEEcCCCEEEEecccccccccCCCCEEECCCCcc
Confidence 9999999999999999999999999999999999996655 78999999999999884 4 5568999999988766
Q ss_pred -cccCCCCCCCceEEEEEEeCCCCCHHHHHHHHHHHHHhCCeeEEEEeCCCCcEEEEe-----eChhhHHHHHHHHHhhc
Q 007325 477 -ILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEG-----MGELHLEIIVDRLKREF 550 (608)
Q Consensus 477 -~~l~~~~~~~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~vl~g-----~GelHLev~~~rL~~~f 550 (608)
.++++++.|+|+++++++|.+..|.++|.+||++|++|||||.++ +||++.+++| ||+|||||+++||+++|
T Consensus 285 ~~~l~~~~~~~P~v~~~i~p~~~~d~~kL~~aL~kL~~eD~sl~~~--~e~~~~l~~g~r~gf~G~lHlev~~erL~~e~ 362 (600)
T PRK05433 285 EEPLPGFKEVKPMVFAGLYPVDSDDYEDLRDALEKLQLNDASLTYE--PETSQALGFGFRCGFLGLLHMEIIQERLEREF 362 (600)
T ss_pred ccCCCCCCCCCcEEEEEEEECCccCHHHHHHHHHHHHHhCCeEEEE--ecCCcceecceEeecHHHHHHHHHHHHHHHhh
Confidence 478889999999999999999999999999999999999999997 6899999999 99999999999999999
Q ss_pred CeEEEEecceEEEEEeeecc
Q 007325 551 KVEANVGAPQVNYRESISKV 570 (608)
Q Consensus 551 ~vev~~s~p~V~yrETi~~~ 570 (608)
|+++.+++|+|+|||||++.
T Consensus 363 ~~~v~~~~P~V~Yreti~~g 382 (600)
T PRK05433 363 DLDLITTAPSVVYEVTLTDG 382 (600)
T ss_pred CceEEEecCEEEEEEEEeCC
Confidence 99999999999999999974
No 20
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=100.00 E-value=4.3e-64 Score=558.88 Aligned_cols=361 Identities=31% Similarity=0.478 Sum_probs=320.1
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeec--C---eeEEEEeCC
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--K---HRINIIDTP 163 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~--~---~~i~liDTP 163 (608)
++|||+|+||+|||||||+++|++.+|.+... ..+++++|+.+.|++||+|+......+.|. + +.++|||||
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~---~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTP 78 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISER---EMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTP 78 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCccc---cccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECC
Confidence 58999999999999999999999988877543 245688999999999999999999988884 3 789999999
Q ss_pred CCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCCcHHHHHHHHHHhhCCccEEEe
Q 007325 164 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQ 243 (608)
Q Consensus 164 G~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ 243 (608)
||.+|..++.++++.+|++|+|+|++++++.++...|..+...++|+++|+||+|+..++.++..+++.+.++.
T Consensus 79 G~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~------ 152 (595)
T TIGR01393 79 GHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSADPERVKKEIEEVIGL------ 152 (595)
T ss_pred CcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccCHHHHHHHHHHHhCC------
Confidence 99999999999999999999999999999999999998888889999999999998765544443444332221
Q ss_pred ccCCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHHhcCCCCCHHHHHH
Q 007325 244 LPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKK 323 (608)
Q Consensus 244 ~pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l~~~~~~~~el~~ 323 (608)
T Consensus 153 -------------------------------------------------------------------------------- 152 (595)
T TIGR01393 153 -------------------------------------------------------------------------------- 152 (595)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhcccCcceeeeeeccCCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccchhccccCCCCCeEEEEEEeeecCCC
Q 007325 324 LIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFV 403 (608)
Q Consensus 324 ~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~~ 403 (608)
...+++++||++|.|+++|++.|.+.+|+|.. ++++|+.++||++++|+++
T Consensus 153 ---------~~~~vi~vSAktG~GI~~Lle~I~~~lp~p~~--------------------~~~~pl~~~V~~~~~d~~~ 203 (595)
T TIGR01393 153 ---------DASEAILASAKTGIGIEEILEAIVKRVPPPKG--------------------DPDAPLKALIFDSHYDNYR 203 (595)
T ss_pred ---------CcceEEEeeccCCCCHHHHHHHHHHhCCCCCC--------------------CCCCCeEEEEEEEEEeCCC
Confidence 00137889999999999999999999999864 2478999999999999999
Q ss_pred ceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCeeecCCEEEEc-C---CCcccccceeccCCCCc--
Q 007325 404 GSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALA-G---LKDTITGETLCDADHPI-- 477 (608)
Q Consensus 404 G~la~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~-g---l~~~~~GdtL~~~~~~~-- 477 (608)
|.++++||++|+|++||.|++.+.++.++|++|+.+.+.. .+++++.||||+++. | ++++++||||++.+.+.
T Consensus 204 G~v~~~rV~sG~lk~Gd~v~~~~~~~~~~v~~i~~~~~~~-~~v~~~~aGdIg~i~~~~~~~~~~~~Gdtl~~~~~~~~~ 282 (595)
T TIGR01393 204 GVVALVRVFEGTIKPGDKIRFMSTGKEYEVDEVGVFTPKL-TKTDELSAGEVGYIIAGIKDVSDVRVGDTITHVKNPAKE 282 (595)
T ss_pred cEEEEEEEECCEEecCCEEEEecCCCeeEEeEEEEecCCc-eECCEEcCCCEEEEeccccccCccCCCCEEECCCCcccc
Confidence 9999999999999999999999999999999999776655 899999999998884 3 56689999999887663
Q ss_pred ccCCCCCCCceEEEEEEeCCCCCHHHHHHHHHHHHHhCCeeEEEEeCCCCcEEEEe-----eChhhHHHHHHHHHhhcCe
Q 007325 478 LLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEG-----MGELHLEIIVDRLKREFKV 552 (608)
Q Consensus 478 ~l~~~~~~~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~vl~g-----~GelHLev~~~rL~~~f~v 552 (608)
+++++++++|+++++|+|.+.+|.++|.+||++|++|||+|.++. ||++.+++| ||+|||||+++||+++||+
T Consensus 283 ~l~~~~~~~P~v~~~i~p~~~~d~~kL~~aL~kL~~eD~sl~~~~--e~~~~l~~g~r~g~lG~lHlei~~erL~re~~~ 360 (595)
T TIGR01393 283 PLPGFKEVKPMVFAGLYPIDTEDYEDLRDALEKLKLNDASLTYEP--ESSPALGFGFRCGFLGLLHMEIIQERLEREFNL 360 (595)
T ss_pred CCCCCcCCCcEEEEEEEECCcccHHHHHHHHHHHhccCCeEEEEe--cCCcccccccEEeeeeHHHHHHHHHHHHHHhCC
Confidence 788899999999999999999999999999999999999999984 799988885 9999999999999999999
Q ss_pred EEEEecceEEEEEeeecc
Q 007325 553 EANVGAPQVNYRESISKV 570 (608)
Q Consensus 553 ev~~s~p~V~yrETi~~~ 570 (608)
++.+++|+|+|||||++.
T Consensus 361 ~v~~~~P~V~Yreti~~g 378 (595)
T TIGR01393 361 DLITTAPSVIYRVYLTNG 378 (595)
T ss_pred eeEEecCEEEEEEEecCC
Confidence 999999999999999863
No 21
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=100.00 E-value=5.9e-60 Score=481.50 Aligned_cols=367 Identities=33% Similarity=0.516 Sum_probs=327.6
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 167 (608)
..+||||||+|++||||||+++||.++|..+..+.+.. .+||+...|++|||||-+....+.|++++||++|||||.|
T Consensus 3 ~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~E--RvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHAD 80 (603)
T COG1217 3 EDIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAE--RVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHAD 80 (603)
T ss_pred cccceeEEEEEecCCcchHHHHHHhhccccccccchhh--hhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCC
Confidence 46899999999999999999999999998887666644 8999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCCcHHHHHHHHHHhhCCccEEEeccCC
Q 007325 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVG 247 (608)
Q Consensus 168 f~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~pi~ 247 (608)
|..++++.|...|+++++|||.+|.++||+.+++.+.+.+++.|+|+||+|++.++.+.++++..+.|-.
T Consensus 81 FGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~---------- 150 (603)
T COG1217 81 FGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVE---------- 150 (603)
T ss_pred ccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHH----------
Confidence 9999999999999999999999999999999999999999999999999999999988888877654410
Q ss_pred CCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHHhcCCCCCHHHHHHHHHh
Q 007325 248 AEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRK 327 (608)
Q Consensus 248 ~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l~~~~~~~~el~~~l~~ 327 (608)
+.. +|+-
T Consensus 151 ---------------------------------------------------L~A-~deQ--------------------- 157 (603)
T COG1217 151 ---------------------------------------------------LGA-TDEQ--------------------- 157 (603)
T ss_pred ---------------------------------------------------hCC-Chhh---------------------
Confidence 000 0000
Q ss_pred hcccCcceeeeeeccCCCC----------ChHHHHHHHHHhCCCCCCCCCCCCCCCCCccchhccccCCCCCeEEEEEEe
Q 007325 328 GTIAGSFVPVLCGSAFKNK----------GVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKI 397 (608)
Q Consensus 328 ~~~~~~~~Pv~~~SA~~~~----------Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~ 397 (608)
--+|++..||..|. .+.+|++.|.+++|.|.. +.++||.++|+-+
T Consensus 158 -----LdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~--------------------~~d~PlQ~qvt~L 212 (603)
T COG1217 158 -----LDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKG--------------------DLDEPLQMQVTQL 212 (603)
T ss_pred -----CCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCC--------------------CCCCCeEEEEEee
Confidence 11578888887663 478999999999999974 4589999999999
Q ss_pred eecCCCceEEEEEEecceeCCCCEEEeCCCC---ceeecceEEEeecCceeecCeeecCCEEEEcCCCcccccceeccCC
Q 007325 398 MSDPFVGSLTFVRVYAGTLSAGSYVLNANKG---KKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDAD 474 (608)
Q Consensus 398 ~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~---~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~GdtL~~~~ 474 (608)
.+++|+|++..+||++|++++||.|.....+ +..||.+++-+.|-++.++++|.|||||+|+|+.++..|||+|+++
T Consensus 213 dyn~y~GrIgigRi~~G~vk~~q~V~~i~~~g~~~~gri~kllgf~GL~R~ei~eA~AGDIVaiaG~~~~~igdTi~d~~ 292 (603)
T COG1217 213 DYNSYVGRIGIGRIFRGTVKPNQQVALIKSDGTTENGRITKLLGFLGLERIEIEEAEAGDIVAIAGLEDINIGDTICDPD 292 (603)
T ss_pred ccccccceeEEEEEecCcccCCCeEEEEcCCCcEEeeEEEeeeeccceeeeecccccccCEEEEcCcccccccccccCCC
Confidence 9999999999999999999999999865433 3468999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCCCCceEEEEEEeCCCC---------CHHHHHHHHHHHHHhCCeeEEEEeCCCCcEEEEeeChhhHHHHHHH
Q 007325 475 HPILLERMDFPDPVIKVAIEPKTKA---------DIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDR 545 (608)
Q Consensus 475 ~~~~l~~~~~~~Pv~~~aiep~~~~---------d~~kL~~aL~~L~~eDPsl~v~~~~etge~vl~g~GelHLev~~~r 545 (608)
.+..++.+.+.+|.+++.+...+.. --.++.+.|.+-.+.+.+|+|+--++-..+.++|.|||||-|+++-
T Consensus 293 ~~~aLp~l~iDePTlsMtf~vN~SPfAG~EGk~vTSR~i~dRL~~El~~NValrVe~t~~pd~f~VsGRGELhLsILiE~ 372 (603)
T COG1217 293 NPEALPALSVDEPTLSMTFSVNDSPFAGKEGKFVTSRQIRDRLNKELETNVALRVEETESPDAFEVSGRGELHLSILIEN 372 (603)
T ss_pred CccCCCCcccCCCceEEEEEecCCCCCCcCCceeeHHHHHHHHHHHhhhceeEEEeecCCCCeEEEeccceeehHHHHHH
Confidence 9999999999999999998766543 2468889999999999999998765568899999999999999999
Q ss_pred HHhhcCeEEEEecceEEEEE
Q 007325 546 LKREFKVEANVGAPQVNYRE 565 (608)
Q Consensus 546 L~~~f~vev~~s~p~V~yrE 565 (608)
|||+ |.|+.+|.|+|.|||
T Consensus 373 MRRE-GfEl~VsrP~Vi~ke 391 (603)
T COG1217 373 MRRE-GFELQVSRPEVIIKE 391 (603)
T ss_pred hhhc-ceEEEecCceEEEEe
Confidence 9999 999999999999999
No 22
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-59 Score=488.46 Aligned_cols=367 Identities=29% Similarity=0.434 Sum_probs=321.6
Q ss_pred cCCCCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC---eeEEEE
Q 007325 84 VIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK---HRINII 160 (608)
Q Consensus 84 ~~~~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~---~~i~li 160 (608)
..|.+++||++||+|.|||||||.++|+..+|.+.... ....++|....|++||||+.+...++.|.+ +.+|+|
T Consensus 54 ~~P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~---~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLI 130 (650)
T KOG0462|consen 54 LDPVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNI---GQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLI 130 (650)
T ss_pred cCchhhccceEEEEEecCCcchHHHHHHHHhCCCCCCC---chhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEee
Confidence 34668999999999999999999999999999665432 234889999999999999999999999988 999999
Q ss_pred eCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCCcHHHHHHHHHHhhCCccE
Q 007325 161 DTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPL 240 (608)
Q Consensus 161 DTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~ 240 (608)
|||||.||..|+.+.+..|||+|+||||.+|+++||...+..+.+.++.+|.|+||+|++.++.+++..++.+.|+..+
T Consensus 131 DTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~- 209 (650)
T KOG0462|consen 131 DTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADPERVENQLFELFDIPP- 209 (650)
T ss_pred cCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998876421
Q ss_pred EEeccCCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHHhcCCCCCHHH
Q 007325 241 VVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEET 320 (608)
Q Consensus 241 ~~~~pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l~~~~~~~~e 320 (608)
T Consensus 210 -------------------------------------------------------------------------------- 209 (650)
T KOG0462|consen 210 -------------------------------------------------------------------------------- 209 (650)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhcccCcceeeeeeccCCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccchhccccCCCCCeEEEEEEeeec
Q 007325 321 IKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSD 400 (608)
Q Consensus 321 l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d 400 (608)
-+++.+||++|.|+.++|++|++.+|+|.. ..++||.+++|.++.|
T Consensus 210 --------------~~~i~vSAK~G~~v~~lL~AII~rVPpP~~--------------------~~d~plr~Lifds~yD 255 (650)
T KOG0462|consen 210 --------------AEVIYVSAKTGLNVEELLEAIIRRVPPPKG--------------------IRDAPLRMLIFDSEYD 255 (650)
T ss_pred --------------cceEEEEeccCccHHHHHHHHHhhCCCCCC--------------------CCCcchHHHhhhhhhh
Confidence 147889999999999999999999999976 2479999999999999
Q ss_pred CCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCe---eecCCEEEEcC-CCcccccceeccCC--
Q 007325 401 PFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKV---ALAGDIIALAG-LKDTITGETLCDAD-- 474 (608)
Q Consensus 401 ~~~G~la~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~---a~aGdIv~i~g-l~~~~~GdtL~~~~-- 474 (608)
.|.|.++++||..|.+++||+|....+++...++.+-.|.-. ..++.+ ..+|+|++-.+ +++.+.|||++...
T Consensus 256 ~y~G~I~~vrv~~G~vrkGdkV~~~~t~~~yev~~vgvm~p~-~~~~~~l~agqvGyIi~~mr~~~ea~IGdTi~~~~~~ 334 (650)
T KOG0462|consen 256 EYRGVIALVRVVDGVVRKGDKVQSAATGKSYEVKVVGVMRPE-MTPVVELDAGQVGYIICNMRNVKEAQIGDTIAHKSVT 334 (650)
T ss_pred hhcceEEEEEEeeeeeecCCEEEEeecCcceEeEEeEEeccC-ceeeeeecccccceeEecccccccccccceeeecccC
Confidence 999999999999999999999998888877766666555533 344444 45566666555 77899999998765
Q ss_pred C-CcccCCCCCCCceEEEEEEeCCCCCHHHHHHHHHHHHHhCCeeEEEEeCCCC----cEEEEeeChhhHHHHHHHHHhh
Q 007325 475 H-PILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEIN----QTVIEGMGELHLEIIVDRLKRE 549 (608)
Q Consensus 475 ~-~~~l~~~~~~~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etg----e~vl~g~GelHLev~~~rL~~~ 549 (608)
. ...++.++...|++++...|.+..|.+.|..++.||+.+|+++.+..+ .++ -+.++++|.|||||+.+||+++
T Consensus 335 ~~v~tl~~~~~~~pMvFvg~fP~dgsd~~~l~~a~erL~lnd~sv~v~~~-~s~aLg~gwr~gflG~LHm~Vf~erle~E 413 (650)
T KOG0462|consen 335 KAVETLPGFEPTKPMVFVGLFPLDGSDYETLRDAIERLVLNDESVTVIKE-SSGALGQGWRLGFLGLLHMEVFIERLERE 413 (650)
T ss_pred cccCcCCCCCCCcceEEeccccCccchhhhHHHHHHHHhcccccceeeec-CCcccccceEeeccceeeHHHHHHHHHHh
Confidence 2 344666777799999999999999999999999999999999999874 344 3689999999999999999999
Q ss_pred cCeEEEEecceEEEEEeeecc
Q 007325 550 FKVEANVGAPQVNYRESISKV 570 (608)
Q Consensus 550 f~vev~~s~p~V~yrETi~~~ 570 (608)
||.++.+++|.|+||--....
T Consensus 414 yg~elivt~PtV~Yr~~~~~~ 434 (650)
T KOG0462|consen 414 YGAELIVTPPTVPYRVVYSNG 434 (650)
T ss_pred cCceeeecCCcceEEEEecCC
Confidence 999999999999999654443
No 23
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=3.3e-58 Score=470.11 Aligned_cols=365 Identities=32% Similarity=0.472 Sum_probs=326.8
Q ss_pred CCCCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeec-----CeeEEE
Q 007325 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-----KHRINI 159 (608)
Q Consensus 85 ~~~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~-----~~~i~l 159 (608)
.+.+++||++|++|.+||||||.++|+..+|.+..... ...++|.+..|++||||++.....+.|. .+.+||
T Consensus 4 ~~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem---~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnl 80 (603)
T COG0481 4 TPQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREM---RAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNL 80 (603)
T ss_pred cchhhccceEEEEEecCCcchHHHHHHHHhcCcChHHH---HHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEE
Confidence 45678999999999999999999999999887665322 3478999999999999999999999884 389999
Q ss_pred EeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCCcHHHHHHHHHHhhCCcc
Q 007325 160 IDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKP 239 (608)
Q Consensus 160 iDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~ 239 (608)
||||||+||..|+.+++..|.|+++||||+.|++.||..-...+...++.++-|+||+|++.++.+++.++|.+.+|...
T Consensus 81 IDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~Adpervk~eIe~~iGid~ 160 (603)
T COG0481 81 IDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAADPERVKQEIEDIIGIDA 160 (603)
T ss_pred cCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCCCCHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887632
Q ss_pred EEEeccCCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHHhcCCCCCHH
Q 007325 240 LVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEE 319 (608)
Q Consensus 240 ~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l~~~~~~~~ 319 (608)
.
T Consensus 161 ~------------------------------------------------------------------------------- 161 (603)
T COG0481 161 S------------------------------------------------------------------------------- 161 (603)
T ss_pred c-------------------------------------------------------------------------------
Confidence 1
Q ss_pred HHHHHHHhhcccCcceeeeeeccCCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccchhccccCCCCCeEEEEEEeee
Q 007325 320 TIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMS 399 (608)
Q Consensus 320 el~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~ 399 (608)
-.+.+||++|.||+++|++|++.+|+|.. ++++|+.|++|..++
T Consensus 162 ----------------dav~~SAKtG~gI~~iLe~Iv~~iP~P~g--------------------~~~~pLkALifDS~y 205 (603)
T COG0481 162 ----------------DAVLVSAKTGIGIEDVLEAIVEKIPPPKG--------------------DPDAPLKALIFDSWY 205 (603)
T ss_pred ----------------hheeEecccCCCHHHHHHHHHhhCCCCCC--------------------CCCCcceEEEEeccc
Confidence 14567999999999999999999999975 468999999999999
Q ss_pred cCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCeeecCCEEEE-cCCC---cccccceeccCCC
Q 007325 400 DPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL-AGLK---DTITGETLCDADH 475 (608)
Q Consensus 400 d~~~G~la~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i-~gl~---~~~~GdtL~~~~~ 475 (608)
|++.|.++++||+.|++++||+|....+|++-.|.++-.+.. .....+++.||+++.+ +|++ +++.|||++...+
T Consensus 206 D~Y~GVv~~vRi~dG~ik~gdki~~m~tg~~y~V~evGvftP-~~~~~~~L~aGeVG~~~a~iK~v~d~~VGDTiT~~~~ 284 (603)
T COG0481 206 DNYLGVVVLVRIFDGTLKKGDKIRMMSTGKEYEVDEVGIFTP-KMVKVDELKAGEVGYIIAGIKDVRDARVGDTITLASN 284 (603)
T ss_pred cccceEEEEEEEeeceecCCCEEEEEecCCEEEEEEEeeccC-CccccccccCCceeEEEEeeeecccCcccceEeccCC
Confidence 999999999999999999999999999999888888877765 6788999999999987 5554 5789999985443
Q ss_pred --CcccCCCCCCCceEEEEEEeCCCCCHHHHHHHHHHHHHhCCeeEEEEeCCCCcEEEEe-----eChhhHHHHHHHHHh
Q 007325 476 --PILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEG-----MGELHLEIIVDRLKR 548 (608)
Q Consensus 476 --~~~l~~~~~~~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~vl~g-----~GelHLev~~~rL~~ 548 (608)
..++++++...|++++.+.|.+..|.+.|.+||.||..+|.+|.++ +||.+.+-.| +|-|||||+.+||+|
T Consensus 285 p~~e~LpGfk~~~P~Vf~GlyPid~~dye~LrdAleKL~LNDasl~~E--~EtS~ALGfGfRcGFLGlLHmeiiqERLeR 362 (603)
T COG0481 285 PATEPLPGFKEVKPMVFAGLYPVDSDDYEDLRDALEKLQLNDASLTYE--PETSQALGFGFRCGFLGLLHMEIIQERLER 362 (603)
T ss_pred CccccCCCCCcCCceEEEeecccChhHHHHHHHHHHhcccccceeeec--cccchhccCceeehhhhHHHHHHHHHHHHH
Confidence 3467888888999999999999999999999999999999999998 4787765555 799999999999999
Q ss_pred hcCeEEEEecceEEEEEeeecc
Q 007325 549 EFKVEANVGAPQVNYRESISKV 570 (608)
Q Consensus 549 ~f~vev~~s~p~V~yrETi~~~ 570 (608)
+|++++....|.|.|+-..+..
T Consensus 363 Ef~ldlI~TaPsV~Y~v~~~~g 384 (603)
T COG0481 363 EFDLDLITTAPSVVYKVELTDG 384 (603)
T ss_pred hhCcceEecCCceEEEEEEcCC
Confidence 9999999999999999776653
No 24
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=100.00 E-value=6.3e-54 Score=434.93 Aligned_cols=270 Identities=72% Similarity=1.153 Sum_probs=261.8
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchHH
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (608)
||+|+||+|+|||||+++|++.+|.+.+.+.+.+|++++|+.+.|++||+|+++....+.|+++++++||||||.+|..+
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCCcHHHHHHHHHHhhCCccEEEeccCCCCCC
Q 007325 172 VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDN 251 (608)
Q Consensus 172 ~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~pi~~~~~ 251 (608)
+.++++.+|++|+|||+.+|++.+++.+|+.+...++|+++|+||+|+.+++++++++++++.++..+++.++|++...+
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~~~~~~~~Pisa~~~ 160 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGADFFRVVEQIREKLGANPVPLQLPIGEEDD 160 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceEEEeccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHHhcCCCCCHHHHHHHHHhhccc
Q 007325 252 FKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIA 331 (608)
Q Consensus 252 ~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l~~~~~~~~el~~~l~~~~~~ 331 (608)
|+|+||++++++|.|+.. .|..+...++|+++.+.++++|++|+|.+++.||+|||+||+|++++.+|+.+.++++++.
T Consensus 161 f~g~vd~~~~~a~~~~~~-~~~~~~~~~ip~~~~~~~~~~r~~l~e~vae~dd~L~e~yl~~~~~~~~el~~~l~~~~~~ 239 (270)
T cd01886 161 FRGVVDLIEMKALYWDGE-LGEKIEETEIPEDLLEEAEEAREELIETLAEFDDELMEKYLEGEEITEEEIKAAIRKGTIA 239 (270)
T ss_pred ceEEEEccccEEEecccC-CCceeEEecCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Confidence 999999999999999443 3667888999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeeeeeccCCCCChHHHHHHHHHhCCCC
Q 007325 332 GSFVPVLCGSAFKNKGVQPLLDAVVDYLPSP 362 (608)
Q Consensus 332 ~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lP~p 362 (608)
+.++|||||||.++.|++.|||.|.+++|+|
T Consensus 240 ~~~~PV~~gSa~~~~Gi~~lld~i~~~~p~p 270 (270)
T cd01886 240 NKIVPVLCGSAFKNKGVQPLLDAVVDYLPSP 270 (270)
T ss_pred CcEEEEEeCcCCCCcCHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999998
No 25
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-52 Score=439.65 Aligned_cols=488 Identities=24% Similarity=0.350 Sum_probs=360.9
Q ss_pred CCCCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEee-----cCeeEEE
Q 007325 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-----NKHRINI 159 (608)
Q Consensus 85 ~~~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~-----~~~~i~l 159 (608)
..+.++|||+++||-+||||+|++.|..+++.... ...+....+.|....|++||+++++...++-. +.+.+|+
T Consensus 123 ~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~-~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~ni 201 (971)
T KOG0468|consen 123 DNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFS-KNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNI 201 (971)
T ss_pred cCcceEEEEEEeeccccChhHHHHhhceecccccc-ccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeee
Confidence 35678999999999999999999999877773221 12233447889999999999999999888765 4578999
Q ss_pred EeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCCc-----------HHHHH
Q 007325 160 IDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGAN-----------FFRTR 228 (608)
Q Consensus 160 iDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~-----------~~~~~ 228 (608)
+|||||.+|..++..+++.+|++++|||+.+|++-+++.+++++.+.++|+.+|+||+|+...+ +..++
T Consensus 202 lDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRLilELkLPP~DAY~KLrHii 281 (971)
T KOG0468|consen 202 LDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRLILELKLPPMDAYYKLRHII 281 (971)
T ss_pred ecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHHHHHHhcCChHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999986533 23455
Q ss_pred HHHHHhhC---CccEEEeccCCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHH----------H----
Q 007325 229 DMIVTNLG---AKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQE----------Y---- 291 (608)
Q Consensus 229 ~~i~~~l~---~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------~---- 291 (608)
++++..+. ..-.++.-|+. .+++|.+...|+.|+...|..-|++.... |
T Consensus 282 ~~iN~~is~~s~~~~~~~sP~~--------------gNvcFaS~~~g~cFtl~sFak~Y~~~~~~~~~d~Fa~RLWGdvY 347 (971)
T KOG0468|consen 282 DEINNLISTFSKDDNPVVSPIL--------------GNVCFASGKLGFCFTLKSFAKLYADAHGHIDVDDFAKRLWGDVY 347 (971)
T ss_pred HHhcchhhhccccccccccccc--------------CceeeeccccceeeehHHHHHHHHHhcCCcchhhhhhhhhcccc
Confidence 55553332 11112222221 23456666677777777666554443110 0
Q ss_pred ---------------------HHHHHHH-------HHhhcHHHHHHHhc--CCCCCHHHHHHHHHhhcccCcceeeeeec
Q 007325 292 ---------------------RSQMIET-------IVELDDEAMESYLE--GNEPDEETIKKLIRKGTIAGSFVPVLCGS 341 (608)
Q Consensus 292 ---------------------r~~l~e~-------~~~~dd~l~e~~l~--~~~~~~~el~~~l~~~~~~~~~~Pv~~~S 341 (608)
-+.++|. +...-++-+...+. |..+++++++-..+-..+ .++.-|++.
T Consensus 348 f~~ktrkF~kk~~~~~~~rsFVeFILePlYKi~sq~igd~~~~l~~~l~e~~v~ls~e~~k~n~rPll~--lvc~~ffg~ 425 (971)
T KOG0468|consen 348 FHSKTRKFVKKPPDGSGSRSFVEFILEPLYKIFSQVIGDEKDSLKGLLAELGVRLSKEAYKLNPRPLLR--LVCKSFFGI 425 (971)
T ss_pred ccccccccccCCCCCcccchhhhhhHhHHHHHHHHHhcchhhhhhhhhhhhcccccHHHhhcCccHHHH--HHHHHhccc
Confidence 0112222 11111122222221 344555554322211110 000112222
Q ss_pred cCCCCChHHHHHHHHHhCCCCCCCCCCCCC-----CCCCccchhccccCCCCCeEEEEEEeee-cCCCceEEEEEEecce
Q 007325 342 AFKNKGVQPLLDAVVDYLPSPLDLPAMKGT-----DPENPEATLERAASDDEPFAGLAFKIMS-DPFVGSLTFVRVYAGT 415 (608)
Q Consensus 342 A~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~-----~~~~~~~~~~~~~~~~~p~~~~V~K~~~-d~~~G~la~~RV~sG~ 415 (608)
. ..+.|++++++|+|.+....+.. ..++........|++.+|+++.+.|++. +...-+.+|+||+||+
T Consensus 426 ~------sgfvd~~v~hi~sP~e~a~~K~~hsy~G~~~~~i~~~m~~c~~~~pLm~h~tklyp~dD~~~f~~f~rv~Sg~ 499 (971)
T KOG0468|consen 426 E------SGFVDMPVEHIPSPRENAARKAEHSYTGTKDSLIYEGMVECNASGPLMVHVTKLYPRDDTVQFHVFGRVYSGQ 499 (971)
T ss_pred h------hhhhHhhHhhcCChhhhhccccceeecCCCcchHHHHHHhhCCCCceeEEeecceecCCceeeeeeeeeeecc
Confidence 1 35899999999999985543322 1222334556789999999999999986 4445789999999999
Q ss_pred eCCCCEEEeCCCC---------ceeecceEEEeecCceeecCeeecCCEEEEcCCCc-ccccceeccC---CCCcccCCC
Q 007325 416 LSAGSYVLNANKG---------KKERIGRLLEMHANSREDVKVALAGDIIALAGLKD-TITGETLCDA---DHPILLERM 482 (608)
Q Consensus 416 l~~g~~v~~~~~~---------~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~-~~~GdtL~~~---~~~~~l~~~ 482 (608)
++.|+.|.+...+ ....|++++...++++.+|++|+||.++.|.|++. +....|+++. .+...++++
T Consensus 500 ~~~~q~V~vlgeny~leDEeD~~~~~v~el~v~~arY~i~V~~~~~G~~VLI~Gidq~i~KtaTi~~~~~ked~yiFrpl 579 (971)
T KOG0468|consen 500 VVTGQDVRVLGENYSLEDEEDMVICEVGELWVVRARYRIPVSRAPAGLWVLIEGVDQSIVKTATIKSLEYKEDVYIFRPL 579 (971)
T ss_pred eeecceeeEeeccccCCCcccceeeeeeeeeeeeeeEEEEecccCCCcEEEEeccchHHhhhhheeccccccceeeccch
Confidence 9999999865433 23468999999999999999999999999999987 5567888764 344567777
Q ss_pred CC-CCceEEEEEEeCCCCCHHHHHHHHHHHHHhCCeeEEEEeCCCCcEEEEeeChhhHHHHHHHHHhhc-CeEEEEecce
Q 007325 483 DF-PDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREF-KVEANVGAPQ 560 (608)
Q Consensus 483 ~~-~~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~vl~g~GelHLev~~~rL~~~f-~vev~~s~p~ 560 (608)
.+ +.|+++++++|.+|++++||++||++.++.+|.+...+ ||+||++|.|.|||+|++++.+||..| .||+++++|.
T Consensus 580 ~~~t~~VvKiaveP~nPsELPKmldgLrKinKsYPl~~tkV-EESGEHvilGtGElYmDcvlyDLR~~yseieikvaDPv 658 (971)
T KOG0468|consen 580 KFNTEPVVKVAVEPLNPSELPKMLDGLRKINKSYPLVITKV-EESGEHVILGTGELYMDCVLYDLRKSYSEIEIKVADPV 658 (971)
T ss_pred hcCCcceEEEEeccCChhhhhHHHHHHHhhcccCCcEEEeh-hhcCceEEecCchhhHHHHHHHHHHHHhhhceeecCce
Confidence 64 58999999999999999999999999999999998887 789999999999999999999999999 7999999999
Q ss_pred EEEEEeeecceeEEEEEeeecCCCCeeEEEEEEEEecCCC
Q 007325 561 VNYRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEVQ 600 (608)
Q Consensus 561 V~yrETi~~~~~~~~~~~kq~gg~gq~~~v~~~~ePl~~g 600 (608)
|.|.||+.+.+... +-..+ .+.-..+.+..||++.|
T Consensus 659 v~F~Et~vetssik--cfaet--pnkknkItmiaEPlek~ 694 (971)
T KOG0468|consen 659 VRFCETVVETSSIK--CFAET--PNKKNKITMIAEPLEKG 694 (971)
T ss_pred eEEEEeeecccchh--hhccC--CCccCceeeeechhhhh
Confidence 99999999876543 22223 23336899999999865
No 26
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-53 Score=455.31 Aligned_cols=468 Identities=28% Similarity=0.416 Sum_probs=343.0
Q ss_pred cCCCCCceeEEEEcCCCCchHHHHHHHHHhhCCccc--ceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEe
Q 007325 84 VIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYK--IGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIID 161 (608)
Q Consensus 84 ~~~~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~--~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liD 161 (608)
+.+.+.+|||++++|.|||||||++.|+..+|.+.. .|++ +++|+.++|+.||||++++.+++..+++.+||||
T Consensus 3 ~~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagki----rfld~redeq~rgitmkss~is~~~~~~~~nlid 78 (887)
T KOG0467|consen 3 QKGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKI----RFLDTREDEQTRGITMKSSAISLLHKDYLINLID 78 (887)
T ss_pred CCCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccce----eeccccchhhhhceeeeccccccccCceEEEEec
Confidence 345678999999999999999999999988886654 3443 8999999999999999999999988999999999
Q ss_pred CCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCCc-----------HHHHHHH
Q 007325 162 TPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGAN-----------FFRTRDM 230 (608)
Q Consensus 162 TPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~-----------~~~~~~~ 230 (608)
+|||.||.+++..+.+.+|+++++||+.+|+..||..+++++...+...++|+||||+...+ .-+++++
T Consensus 79 spghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidrl~~el~lsp~ea~~~l~r~i~~ 158 (887)
T KOG0467|consen 79 SPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDRLITELKLSPQEAYEHLLRVIEQ 158 (887)
T ss_pred CCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhhhHHHHHhcChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999976533 2345555
Q ss_pred HHHhhCCccEEEeccCCCCCCeeeEEecc-----cceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHH-----
Q 007325 231 IVTNLGAKPLVVQLPVGAEDNFKGVVDLV-----KMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIV----- 300 (608)
Q Consensus 231 i~~~l~~~~~~~~~pi~~~~~~~g~idl~-----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~----- 300 (608)
++...|.-..-+ + -..++...+-|.. ...++.|....+||.|....+..-+..+....++++...++
T Consensus 159 vn~~i~~~~~~~-v--~l~~~~~~i~d~~~~F~p~kgNVif~~A~~~~~f~~~~fak~~~~kl~~k~~al~k~lwgd~y~ 235 (887)
T KOG0467|consen 159 VNGVIGQFLGGI-V--ELDDNWENIEDEEITFGPEDGNVIFASALDGWGFGIEQFAKFYAKKLGLKDAALLKFLWGDRYI 235 (887)
T ss_pred hhhHHHHhhcch-h--hccchhhhhhhcceeecCCCCcEEEEEecccccccHHHHHHHHHHhcChhhhhhhhhhccceee
Confidence 554443111000 0 0000000000000 01122333333678887777666555443333322222222
Q ss_pred -----------------------------h--------hcHHHHHHHhc--CCCCCHHHHHHHHHhhcccCcceeeeeec
Q 007325 301 -----------------------------E--------LDDEAMESYLE--GNEPDEETIKKLIRKGTIAGSFVPVLCGS 341 (608)
Q Consensus 301 -----------------------------~--------~dd~l~e~~l~--~~~~~~~el~~~l~~~~~~~~~~Pv~~~S 341 (608)
. .|.+.+++... +..+-+.+++..+. .+.+.|+|+-
T Consensus 236 ~~ktk~I~~~~~~~grkplf~~~vle~lw~iy~~~~~~~d~~~~~ki~k~l~i~~l~r~~~~ll~--~im~~wLPls--- 310 (887)
T KOG0467|consen 236 DPKTKRICEGKKLKGRKPLFVQFVLENLWRIYELALKSRDKEKLEKIAKSLNIKLLPRDLRNLLD--AIMSTWLPLS--- 310 (887)
T ss_pred cchhhhhhcccCcccCCCccceeehhhHHHHHHHHhccchHHHHHHHhhhcccccchHHHHHHHH--HHHHhhcccc---
Confidence 1 11222222221 12333333332222 2346788863
Q ss_pred cCCCCChHHHHHHHHHhCCCCCCCCCCCCCC-------C-CCccchhccccCCCCCeEEEEEEeeec-----CCCceEEE
Q 007325 342 AFKNKGVQPLLDAVVDYLPSPLDLPAMKGTD-------P-ENPEATLERAASDDEPFAGLAFKIMSD-----PFVGSLTF 408 (608)
Q Consensus 342 A~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~-------~-~~~~~~~~~~~~~~~p~~~~V~K~~~d-----~~~G~la~ 408 (608)
+..+-+.+.++|+|.+.+..+... . +.+.......|++++|..++|.|+... |....++|
T Consensus 311 -------~avll~a~~~lp~pl~~~~~r~~rl~~s~~~~~~~~~~~~v~~~~~~~pviv~Vskm~~~~~k~lp~~~l~~~ 383 (887)
T KOG0467|consen 311 -------DAVLLTVVYKLPDPIRSQAERGLRLLSSSDHRSDPPLTKAVKSCSKESPVLVFVSKMLATPLKYLPQSRLLAF 383 (887)
T ss_pred -------cchHHHHHHhcCCHHHHHHHhhceeccCcccccChHhhhhhhcCCCCCcEEEEEEeeeccchhhCchhhheee
Confidence 445666778899987755433110 0 011223345688999999999999763 33236899
Q ss_pred EEEecceeCCCCEEEeCCC-------CceeecceEEEeecCceeecCeeecCCEEEEcCCCcccccceeccCCCCcccCC
Q 007325 409 VRVYAGTLSAGSYVLNANK-------GKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLER 481 (608)
Q Consensus 409 ~RV~sG~l~~g~~v~~~~~-------~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~GdtL~~~~~~~~l~~ 481 (608)
+||||||++.||.||..+. -.+.+|.++|.++|++..+.+++++|++++|.|-..+....|||+.....++..
T Consensus 384 ari~sgTlr~g~~v~v~~pd~~~~e~i~~~~ie~lyl~mgqelv~~d~v~~gnv~~I~g~~~vlks~TL~s~~~~~p~~~ 463 (887)
T KOG0467|consen 384 ARIFSGTLRVGQVVYVLGPDPLSPEHITECTVESLYLFMGQELVPLDEVPSGNVVAIGGAGIVLKSATLCSKVPCGPNLV 463 (887)
T ss_pred eeeccCceeeccEeeecCCCCCCcceeeeeeehhhHHhhcccceeeeccCCCcEEEecccceEeccceecccCCCcceee
Confidence 9999999999999997544 234679999999999999999999999999998333567889998754444333
Q ss_pred CCC-CCceEEEEEEeCCCCCHHHHHHHHHHHHHhCCeeEEEEeCCCCcEEEEeeChhhHHHHHHHHHhhc-CeEEEEecc
Q 007325 482 MDF-PDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREF-KVEANVGAP 559 (608)
Q Consensus 482 ~~~-~~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~vl~g~GelHLev~~~rL~~~f-~vev~~s~p 559 (608)
..+ -+|.++++|+|.++.|+++|.++|+.|.+.||++++..+ ++||+++...||+|||.|+.+|++ | ++++.+++|
T Consensus 464 ~~f~~tp~vrvaiep~~p~em~~L~~glkll~~adp~v~i~v~-~~gEhvl~~aGevhlerc~kDL~e-fa~i~i~vSeP 541 (887)
T KOG0467|consen 464 VNFQITPIVRVAIEPDDPDEMDKLVEGLKLLNQADPFVKIRVE-ENGEHVLVTAGEVHLERCLKDLKE-FAKIEISVSEP 541 (887)
T ss_pred eeeeeeeEEEEEeecCChHHhHHHHHHHHhhcccchhhHHHHh-hccceeeeeccHHHHHHHHHHHhh-hhceEEEecCC
Confidence 333 389999999999999999999999999999999999885 799999999999999999999999 7 899999999
Q ss_pred eEEEEEeeeccee
Q 007325 560 QVNYRESISKVSE 572 (608)
Q Consensus 560 ~V~yrETi~~~~~ 572 (608)
.|+||||+.+.+.
T Consensus 542 ~vpfrET~~e~s~ 554 (887)
T KOG0467|consen 542 LVPFRETIIEDSD 554 (887)
T ss_pred ccchhhhccccch
Confidence 9999999965543
No 27
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=100.00 E-value=1.2e-49 Score=403.38 Aligned_cols=263 Identities=36% Similarity=0.547 Sum_probs=244.8
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeec----cCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCC
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVH----EGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG 164 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~----~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 164 (608)
++|||+|+||+|+|||||+++|++.+|.+.+.|.+. .|++++|+.+.|++||+|+......+.|+++++++|||||
T Consensus 1 ~~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG 80 (267)
T cd04169 1 RRRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPG 80 (267)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCC
Confidence 369999999999999999999999999999999887 5889999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCCcHHHHHHHHHHhhCCccEEEec
Q 007325 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQL 244 (608)
Q Consensus 165 ~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~ 244 (608)
|.+|..++..+++.+|++|+|+|++.+++.+++.+|+.+...++|+++|+||+|+..+++.++++++++.++..++++++
T Consensus 81 ~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~l~~~l~~~~~~~~~ 160 (267)
T cd04169 81 HEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGRDPLELLDEIEEELGIDCTPLTW 160 (267)
T ss_pred chHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCCCHHHHHHHHHHHHCCCceeEEe
Confidence 99999999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHHhcCCCCCHHHHHHH
Q 007325 245 PVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKL 324 (608)
Q Consensus 245 pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l~~~~~~~~el~~~ 324 (608)
|++.+.+|+|++|++.+++|.|.....+......++|+++. |.+++.||+|||+|+++++++.+++.+.
T Consensus 161 Pi~~~~~~~g~vd~~~~~a~~~~~~~~~~~~~~~~~p~~~~-----------e~~~e~~~~l~e~~~e~~~~~~~~~~~~ 229 (267)
T cd04169 161 PIGMGKDFKGVYDRRTGEVELYDRGAGGATIAPEETKGLDD-----------PKLDELGGDLAEQLREELELLEGAGPEF 229 (267)
T ss_pred cccCCCceEEEEEhhhCEEEEecCCCCCccceeccCCcccH-----------HHHHhcCHHHHHHHhCCCccchhhhHHH
Confidence 99999999999999999999994322222345566676543 7889999999999999999999999999
Q ss_pred HHhhcccCcceeeeeeccCCCCChHHHHHHHHHhCCCC
Q 007325 325 IRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSP 362 (608)
Q Consensus 325 l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lP~p 362 (608)
++++++.+.++|||||||.+|.|++.|||+|++++|+|
T Consensus 230 ~~~~~~~~~~~Pv~~gsa~~~~Gv~~Lld~i~~~~P~p 267 (267)
T cd04169 230 DQEAFLAGELTPVFFGSALNNFGVQELLDALVDLAPAP 267 (267)
T ss_pred hHHHHHcCCEEEEEecccccCcCHHHHHHHHHHHCCCC
Confidence 99999999999999999999999999999999999998
No 28
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=100.00 E-value=1.7e-47 Score=390.02 Aligned_cols=268 Identities=44% Similarity=0.715 Sum_probs=257.6
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchHH
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (608)
||+|+||+|+|||||+++|++.+|.+.+.|.+..|++++|+.+.|.++++|+......+.|+++++++|||||+.+|..+
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 68999999999999999999999988888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCCcHHHHHHHHHHhhCCccEEEeccCCCCCC
Q 007325 172 VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDN 251 (608)
Q Consensus 172 ~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~pi~~~~~ 251 (608)
+..+++.+|++++|+|++.+...++..+|+++...++|+++|+||+|+..+++.+.++++++.++..+++.++|++.+.+
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~~~~~~~~~l~~~~~~~~~~~~ip~~~~~~ 160 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERADFDKTLAALQEAFGRPVVPLQLPIGEGDD 160 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCCCHHHHHHHHHHHhCCCeEEEEecccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHHhcCCCCCHHHHHHHHHhhccc
Q 007325 252 FKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIA 331 (608)
Q Consensus 252 ~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l~~~~~~~~el~~~l~~~~~~ 331 (608)
|.|++|++.+++|.|++ |......++|+++.+.++++|..|+|.+++.||+|||+||+|++++++++.+.+++++..
T Consensus 161 ~~~~vd~~~~~~~~~~~---~~~~~~~~~p~~~~~~~~~~~~~l~e~~a~~dd~l~e~yl~~~~~~~~~l~~~l~~~~~~ 237 (268)
T cd04170 161 FKGVVDLLTEKAYIYSP---GAPSEEIEIPEELKEEVAEAREELLEAVAETDDELMEKYLEGGELTEEELHAGLRRALRA 237 (268)
T ss_pred eeEEEEcccCEEEEccC---CCcceeccCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999965 334567789999999999999999999999999999999999999999999999999999
Q ss_pred CcceeeeeeccCCCCChHHHHHHHHHhCCCC
Q 007325 332 GSFVPVLCGSAFKNKGVQPLLDAVVDYLPSP 362 (608)
Q Consensus 332 ~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lP~p 362 (608)
+.++|||||||+++.|++.|+|+|.+++|+|
T Consensus 238 ~~~~pv~~gSa~~~~G~~~ll~~~~~~~p~p 268 (268)
T cd04170 238 GLLVPVLCGSALTNIGVRELLDALVHLLPSP 268 (268)
T ss_pred CCEEEEEEeeCCCCcCHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999998
No 29
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=100.00 E-value=4.9e-46 Score=370.94 Aligned_cols=237 Identities=41% Similarity=0.648 Sum_probs=222.6
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchHH
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (608)
||+++||+|+|||||+++|++.+|.+.+.|.++.|++++|+.+.|++||+|+......+.|+++++++||||||.+|..+
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCCcHHHHHHHHHHhhCCccEEEeccCCCCCC
Q 007325 172 VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDN 251 (608)
Q Consensus 172 ~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~pi~~~~~ 251 (608)
+..+++.+|++++|+|+.++++.+++.+|+.+...++|+++|+||+|+..+++++++++|++.++.+++|+|+|+
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~----- 155 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVG----- 155 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCc-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred eeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHHhcCCCCCHHHHHHHHHhhccc
Q 007325 252 FKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIA 331 (608)
Q Consensus 252 ~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l~~~~~~~~el~~~l~~~~~~ 331 (608)
+++.+. .. ..++++|+|.+++.||+|||+||+|++++.+|+++.+++++..
T Consensus 156 ---~~~~~~---------------~~-----------~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~ 206 (237)
T cd04168 156 ---LAPNIC---------------ET-----------NEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAK 206 (237)
T ss_pred ---Eeeeee---------------ee-----------eeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHh
Confidence 121100 01 1235789999999999999999999999999999999999999
Q ss_pred CcceeeeeeccCCCCChHHHHHHHHHhCCCC
Q 007325 332 GSFVPVLCGSAFKNKGVQPLLDAVVDYLPSP 362 (608)
Q Consensus 332 ~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lP~p 362 (608)
+.++|||||||.++.|++.|||+|++++|+|
T Consensus 207 ~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p~~ 237 (237)
T cd04168 207 RKVFPVYHGSALKGIGIEELLEGITKLFPTS 237 (237)
T ss_pred CCeEEEEEccccCCcCHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999998
No 30
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=100.00 E-value=4.5e-37 Score=347.71 Aligned_cols=379 Identities=25% Similarity=0.304 Sum_probs=282.0
Q ss_pred CCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCC
Q 007325 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (608)
Q Consensus 87 ~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 166 (608)
..+.++|+|+||+|||||||+++|.. + .+.. ...+|+|++.....+.|+++.++|||||||.
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~--~------~v~~----------~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe 348 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRK--T------NVAA----------GEAGGITQHIGAYQVETNGGKITFLDTPGHE 348 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHh--C------Cccc----------cccCceeeeccEEEEEECCEEEEEEECCCCc
Confidence 34779999999999999999999952 1 1111 1136889999999999999999999999999
Q ss_pred CchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCCcHHHHHHHHHHhhCCccEEEeccC
Q 007325 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPV 246 (608)
Q Consensus 167 df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~pi 246 (608)
+|...+.++++.+|++|+|||+.+|+..++.++|..+...++|+|+|+||+|+..++++++..++.+. +.
T Consensus 349 ~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~-~~--------- 418 (787)
T PRK05306 349 AFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELSEY-GL--------- 418 (787)
T ss_pred cchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccCHHHHHHHHHHh-cc---------
Confidence 99999999999999999999999999999999999999999999999999999877665555444320 00
Q ss_pred CCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHHhcCCCCCHHHHHHHHH
Q 007325 247 GAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIR 326 (608)
Q Consensus 247 ~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l~~~~~~~~el~~~l~ 326 (608)
+.+ +
T Consensus 419 -----------------------------------------------------------~~e-----------~------ 422 (787)
T PRK05306 419 -----------------------------------------------------------VPE-----------E------ 422 (787)
T ss_pred -----------------------------------------------------------cHH-----------H------
Confidence 000 0
Q ss_pred hhcccCcceeeeeeccCCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccchhccccCCCCCeEEEEEEeeecCCCceE
Q 007325 327 KGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSL 406 (608)
Q Consensus 327 ~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~~G~l 406 (608)
.+..+|++++||++|.|+++|+++|..... .. ...++++.|+.++||+++.|+++|.+
T Consensus 423 ----~g~~vp~vpvSAktG~GI~eLle~I~~~~e-~~-----------------~l~~~~~~~~~g~V~es~~dkg~G~v 480 (787)
T PRK05306 423 ----WGGDTIFVPVSAKTGEGIDELLEAILLQAE-VL-----------------ELKANPDRPARGTVIEAKLDKGRGPV 480 (787)
T ss_pred ----hCCCceEEEEeCCCCCCchHHHHhhhhhhh-hh-----------------hcccCCCCCcEEEEEEEEEcCCCeEE
Confidence 022368999999999999999999975321 00 12245678999999999999999999
Q ss_pred EEEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCeeecCCEEEEcCCCcc-cccceeccCCCC---------
Q 007325 407 TFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDT-ITGETLCDADHP--------- 476 (608)
Q Consensus 407 a~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~-~~GdtL~~~~~~--------- 476 (608)
+++||++|+|+.||.|++.. ++++|+.|.+....++++|.|||+|.|.||+++ .+||||+...+.
T Consensus 481 ~~v~V~sGtLk~Gd~vv~g~-----~~gkVr~m~~~~~~~v~~A~pGd~V~I~gl~~~p~~Gd~l~~~~~e~~a~~~~~~ 555 (787)
T PRK05306 481 ATVLVQNGTLKVGDIVVAGT-----TYGRVRAMVDDNGKRVKEAGPSTPVEILGLSGVPQAGDEFVVVEDEKKAREIAEY 555 (787)
T ss_pred EEEEEecCeEecCCEEEECC-----cEEEEEEEECCCCCCCCEEcCCCeEEEeCCCCCCCCCCEEEEcCCHHHHHHHHHH
Confidence 99999999999999999863 567888888888889999999999999999998 899999843221
Q ss_pred ---------------cccCCCCCC-----CceEEEEEEeCCCCCHHHHHHHHHHHHHhCCeeEEEEeCCCC---------
Q 007325 477 ---------------ILLERMDFP-----DPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEIN--------- 527 (608)
Q Consensus 477 ---------------~~l~~~~~~-----~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etg--------- 527 (608)
..++.+..+ .+.+.+.|.+...++.+.|..+|.+|..+++.+.+-.. .-|
T Consensus 556 r~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~iikad~~Gs~eai~~~l~~l~~~~v~~~i~~~-~vG~it~~Dv~l 634 (787)
T PRK05306 556 RQEKAREKKLARQQRVSLENLFEQMKEGEVKELNLIIKADVQGSVEALKDSLEKLSTDEVKVNIIHS-GVGAITESDVTL 634 (787)
T ss_pred HHHHHHHHHhhhccccCHHHhhhhhhcCCceEEEEEEEeCCcchHHHHHHHHHhhcccCCceEEEee-ccCCCCHHHHHH
Confidence 112222111 13699999999999999999999999999999988542 222
Q ss_pred ----cEEEEeeChhhHHHHHHHHHhhcCeEEEEec----------------ceEEEEEeeecceeEEEEEeeecCCCCee
Q 007325 528 ----QTVIEGMGELHLEIIVDRLKREFKVEANVGA----------------PQVNYRESISKVSEVKYVHKKQSGGQGQF 587 (608)
Q Consensus 528 ----e~vl~g~GelHLev~~~rL~~~f~vev~~s~----------------p~V~yrETi~~~~~~~~~~~kq~gg~gq~ 587 (608)
.-+|.|.+-- ..--...+.+.-||+|.... -.-.|+|.+.+.+++...++-. ..|.-
T Consensus 635 a~~~~a~ii~Fnv~-~~~~~~~~a~~~~v~i~~~~iIY~l~d~~~~~~~~~l~~~~~e~~~g~a~v~~vF~~~--k~~~i 711 (787)
T PRK05306 635 AAASNAIIIGFNVR-PDAKARKLAEQEGVDIRYYSIIYDLIDDVKAAMSGMLEPEYEEEIIGQAEVREVFKVS--KVGTI 711 (787)
T ss_pred HHhcCCEEEEEcCC-CCHHHHHHHHHcCCEEEEeChHHHHHHHHHHHHhhccCchhheeeeeeEEEEEEEecC--CCCeE
Confidence 2344454421 22223444444466665543 1112888888888887655421 22454
Q ss_pred EEEEEEEEecCCC
Q 007325 588 ADITVRFEPMEVQ 600 (608)
Q Consensus 588 ~~v~~~~ePl~~g 600 (608)
+-|.+.=--+.+|
T Consensus 712 aGc~V~~G~i~~~ 724 (787)
T PRK05306 712 AGCMVTEGKIKRN 724 (787)
T ss_pred EEEEEeeCEEecC
Confidence 5555443333333
No 31
>PRK12736 elongation factor Tu; Reviewed
Probab=100.00 E-value=2.9e-36 Score=322.89 Aligned_cols=272 Identities=28% Similarity=0.408 Sum_probs=217.4
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceee-ccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEV-HEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~-~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 166 (608)
+...||+++||+|||||||+++|+...+. .|.. ..+...+|..++|++||+|++.....+.+++++++|||||||.
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~---~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~ 86 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAE---RGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHA 86 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhh---hccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHH
Confidence 44689999999999999999999843321 1221 1123468999999999999999988888888999999999999
Q ss_pred CchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCE-EEEEeCCCcCCCcHHHHHHHHHHhhCCccEEEecc
Q 007325 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLP 245 (608)
Q Consensus 167 df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~-ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~p 245 (608)
+|...+.+++..+|++++|||+.+|+..++++++..+...++|. |+|+||+|+...+ +..+.+.
T Consensus 87 ~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~--~~~~~i~------------- 151 (394)
T PRK12736 87 DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDE--ELLELVE------------- 151 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchH--HHHHHHH-------------
Confidence 99999999999999999999999999999999999999999995 6789999986321 1111110
Q ss_pred CCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHHhcCCCCCHHHHHHHH
Q 007325 246 VGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLI 325 (608)
Q Consensus 246 i~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l~~~~~~~~el~~~l 325 (608)
+++...+
T Consensus 152 -------------------------------------------------------------------------~~i~~~l 158 (394)
T PRK12736 152 -------------------------------------------------------------------------MEVRELL 158 (394)
T ss_pred -------------------------------------------------------------------------HHHHHHH
Confidence 1111222
Q ss_pred HhhcccCcceeeeeeccCCCC--------ChHHHHHHHHHhCCCCCCCCCCCCCCCCCccchhccccCCCCCeEEEEEEe
Q 007325 326 RKGTIAGSFVPVLCGSAFKNK--------GVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKI 397 (608)
Q Consensus 326 ~~~~~~~~~~Pv~~~SA~~~~--------Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~ 397 (608)
+........+|++++||++|. ++..|++.|.+++|.|.. +.++||.++|+++
T Consensus 159 ~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~~~~--------------------~~~~p~r~~I~~~ 218 (394)
T PRK12736 159 SEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPTPER--------------------DTDKPFLMPVEDV 218 (394)
T ss_pred HHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCCCCC--------------------CCCCCeEEEEEEE
Confidence 222122234789999999983 689999999999997743 1368999999999
Q ss_pred eecCCCceEEEEEEecceeCCCCEEEeCCC--CceeecceEEEeecCceeecCeeecCCEEEE--cCCC--cccccceec
Q 007325 398 MSDPFVGSLTFVRVYAGTLSAGSYVLNANK--GKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DTITGETLC 471 (608)
Q Consensus 398 ~~d~~~G~la~~RV~sG~l~~g~~v~~~~~--~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~--~~~~GdtL~ 471 (608)
+.+++.|.+++|||.+|+|+.||.|++.+. +...+|++|... ..++++|.|||++++ .|++ ++..|++||
T Consensus 219 ~~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~~~~~~V~sI~~~----~~~~~~a~aGd~v~l~l~~i~~~~i~~G~vl~ 294 (394)
T PRK12736 219 FTITGRGTVVTGRVERGTVKVGDEVEIVGIKETQKTVVTGVEMF----RKLLDEGQAGDNVGVLLRGVDRDEVERGQVLA 294 (394)
T ss_pred EecCCcEEEEEEEEeecEEecCCEEEEecCCCCeEEEEEEEEEC----CEEccEECCCCEEEEEECCCcHHhCCcceEEe
Confidence 999999999999999999999999998665 556788888642 468999999999976 6764 488999999
Q ss_pred cCC
Q 007325 472 DAD 474 (608)
Q Consensus 472 ~~~ 474 (608)
+++
T Consensus 295 ~~~ 297 (394)
T PRK12736 295 KPG 297 (394)
T ss_pred cCC
Confidence 875
No 32
>CHL00071 tufA elongation factor Tu
Probab=100.00 E-value=3.5e-36 Score=323.74 Aligned_cols=274 Identities=27% Similarity=0.400 Sum_probs=218.8
Q ss_pred CCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCC
Q 007325 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (608)
Q Consensus 87 ~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 166 (608)
.+...||+++||+|||||||+++|++..+.+.. ......+.+|+.+.|++||+|++.....+.+++.+++|+|||||.
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~--~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~ 86 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGG--AKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA 86 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCcccc--ccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH
Confidence 345689999999999999999999987765431 111233578999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCC-EEEEEeCCCcCCCcHHHHHHHHHHhhCCccEEEecc
Q 007325 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLP 245 (608)
Q Consensus 167 df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p-~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~p 245 (608)
+|...+.+++..+|++++|||+.+|+..|+++++..+...++| +|+|+||+|+...+ +..+.+.
T Consensus 87 ~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~--~~~~~~~------------- 151 (409)
T CHL00071 87 DYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDE--ELLELVE------------- 151 (409)
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHH--HHHHHHH-------------
Confidence 9999999999999999999999999999999999999999999 56789999986421 1111111
Q ss_pred CCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHHhcCCCCCHHHHHHHH
Q 007325 246 VGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLI 325 (608)
Q Consensus 246 i~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l~~~~~~~~el~~~l 325 (608)
+++...+
T Consensus 152 -------------------------------------------------------------------------~~l~~~l 158 (409)
T CHL00071 152 -------------------------------------------------------------------------LEVRELL 158 (409)
T ss_pred -------------------------------------------------------------------------HHHHHHH
Confidence 1122222
Q ss_pred HhhcccCcceeeeeeccCCCC------------------ChHHHHHHHHHhCCCCCCCCCCCCCCCCCccchhccccCCC
Q 007325 326 RKGTIAGSFVPVLCGSAFKNK------------------GVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDD 387 (608)
Q Consensus 326 ~~~~~~~~~~Pv~~~SA~~~~------------------Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (608)
+........+|++++||++|. |+..|+++|.+++|.|.. +.+
T Consensus 159 ~~~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~~p~~--------------------~~~ 218 (409)
T CHL00071 159 SKYDFPGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIPTPER--------------------DTD 218 (409)
T ss_pred HHhCCCCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCCCCCC--------------------CCC
Confidence 222212234688888888775 468999999999887743 136
Q ss_pred CCeEEEEEEeeecCCCceEEEEEEecceeCCCCEEEeCC--CCceeecceEEEeecCceeecCeeecCCEEEE--cCCC-
Q 007325 388 EPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNAN--KGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK- 462 (608)
Q Consensus 388 ~p~~~~V~K~~~d~~~G~la~~RV~sG~l~~g~~v~~~~--~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~- 462 (608)
.||.++|++++.+++.|.+++|||++|+++.||.|...+ .+...+|.+|... .+++++|.|||+|++ .+++
T Consensus 219 ~p~r~~I~~v~~~~g~G~Vv~G~V~sG~l~~Gd~v~i~p~~~~~~~~VksI~~~----~~~v~~a~aGd~v~i~l~~i~~ 294 (409)
T CHL00071 219 KPFLMAIEDVFSITGRGTVATGRIERGTVKVGDTVEIVGLRETKTTTVTGLEMF----QKTLDEGLAGDNVGILLRGIQK 294 (409)
T ss_pred CCEEEEEEEEEEeCCCeEEEEEEEecCEEeeCCEEEEeeCCCCcEEEEEEEEEc----CcCCCEECCCceeEEEEcCCCH
Confidence 899999999999999999999999999999999998643 3456788888643 257899999999976 4654
Q ss_pred -cccccceeccCC
Q 007325 463 -DTITGETLCDAD 474 (608)
Q Consensus 463 -~~~~GdtL~~~~ 474 (608)
++..||+|++++
T Consensus 295 ~~i~~G~vl~~~~ 307 (409)
T CHL00071 295 EDIERGMVLAKPG 307 (409)
T ss_pred HHcCCeEEEecCC
Confidence 488999999875
No 33
>PLN03126 Elongation factor Tu; Provisional
Probab=100.00 E-value=3.5e-35 Score=318.61 Aligned_cols=273 Identities=26% Similarity=0.353 Sum_probs=217.2
Q ss_pred CCCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCC
Q 007325 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (608)
Q Consensus 86 ~~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 165 (608)
..+...||+++||+|+|||||+++|++..+.+.. ....+...+|+.++|+++|+|++.....+.+++++++|||||||
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~--~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh 154 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGG--SAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGH 154 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhcc--ccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCH
Confidence 3456789999999999999999999987775432 22334467999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCC-EEEEEeCCCcCCCc--HHHHHHHHHHhhCCccEEE
Q 007325 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGAN--FFRTRDMIVTNLGAKPLVV 242 (608)
Q Consensus 166 ~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p-~ivviNK~D~~~~~--~~~~~~~i~~~l~~~~~~~ 242 (608)
.+|..++..++..+|++++|||+.+|+..|++++|..+...++| +++++||||+...+ ++.+.+++++.
T Consensus 155 ~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~-------- 226 (478)
T PLN03126 155 ADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVREL-------- 226 (478)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHHHHHHHHHH--------
Confidence 99999999999999999999999999999999999999999999 56789999986421 11111122221
Q ss_pred eccCCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHHhcCCCCCHHHHH
Q 007325 243 QLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIK 322 (608)
Q Consensus 243 ~~pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l~~~~~~~~el~ 322 (608)
T Consensus 227 -------------------------------------------------------------------------------- 226 (478)
T PLN03126 227 -------------------------------------------------------------------------------- 226 (478)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhcccCcceeeeeeccCCCC------------------ChHHHHHHHHHhCCCCCCCCCCCCCCCCCccchhcccc
Q 007325 323 KLIRKGTIAGSFVPVLCGSAFKNK------------------GVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAA 384 (608)
Q Consensus 323 ~~l~~~~~~~~~~Pv~~~SA~~~~------------------Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~ 384 (608)
+++.-.....+|++.+||+++. ++..|++.|.++.|.|..
T Consensus 227 --l~~~g~~~~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~~~~p~r-------------------- 284 (478)
T PLN03126 227 --LSSYEFPGDDIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSYIPIPQR-------------------- 284 (478)
T ss_pred --HHhcCCCcCcceEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHhCCCCCC--------------------
Confidence 1111111223566677776652 256899999988776643
Q ss_pred CCCCCeEEEEEEeeecCCCceEEEEEEecceeCCCCEEEeCCCC--ceeecceEEEeecCceeecCeeecCCEEEE--cC
Q 007325 385 SDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKG--KKERIGRLLEMHANSREDVKVALAGDIIAL--AG 460 (608)
Q Consensus 385 ~~~~p~~~~V~K~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~--~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~g 460 (608)
+.+.||.++|..++..+++|.+..|+|.+|++++||.|+..+.+ ...+|..|... ..++++|.|||.++| .+
T Consensus 285 ~~~~p~r~~I~~vf~v~g~GtVv~G~V~sG~i~~Gd~v~i~p~~~~~~~~VksI~~~----~~~v~~A~aG~~v~l~L~~ 360 (478)
T PLN03126 285 QTDLPFLLAVEDVFSITGRGTVATGRVERGTVKVGETVDIVGLRETRSTTVTGVEMF----QKILDEALAGDNVGLLLRG 360 (478)
T ss_pred ccccceeeEEEEEEEeCCceEEEEEEEEcCeEecCCEEEEecCCCceEEEEEEEEEC----CeECCEEeCCceeeeeccC
Confidence 13589999999999999999999999999999999999987654 35678877643 478999999999998 55
Q ss_pred CC--cccccceeccCC
Q 007325 461 LK--DTITGETLCDAD 474 (608)
Q Consensus 461 l~--~~~~GdtL~~~~ 474 (608)
++ ++..|++|++++
T Consensus 361 i~~~di~rG~VL~~~~ 376 (478)
T PLN03126 361 IQKADIQRGMVLAKPG 376 (478)
T ss_pred CcHHHcCCccEEecCC
Confidence 54 378999999875
No 34
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=100.00 E-value=3.3e-35 Score=317.98 Aligned_cols=272 Identities=26% Similarity=0.312 Sum_probs=220.2
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccce---------eeccCC----ccccchhhhhhcceeEeecEEEEeecC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIG---------EVHEGT----ATMDWMEQEQERGITITSAATTTYWNK 154 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g---------~~~~g~----~~~d~~~~e~~~giTi~~~~~~~~~~~ 154 (608)
+...||+++||.|+|||||+++|++.+|.+...+ ....|+ .++|+.++|++||+|++.+...+.|++
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 3457999999999999999999999988776533 122333 479999999999999999999999999
Q ss_pred eeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCC-------chhHHHHHHHHHhcCCCE-EEEEeCCCcCCC----
Q 007325 155 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-------EPQSETVWRQADKYGVPR-ICFVNKMDRLGA---- 222 (608)
Q Consensus 155 ~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~-------~~~t~~~~~~~~~~~~p~-ivviNK~D~~~~---- 222 (608)
+.++|||||||.+|..++..++..+|++|+|||+.+|+ ..||+++|..+...++|. |+|+||||+...
T Consensus 85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~~~ 164 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVNYSQ 164 (446)
T ss_pred eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccchhhH
Confidence 99999999999999999999999999999999999997 589999999999999996 579999996432
Q ss_pred -cHHHHHHHHHHhhCCccEEEeccCCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHh
Q 007325 223 -NFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVE 301 (608)
Q Consensus 223 -~~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~ 301 (608)
.++++.+++++.|+.
T Consensus 165 ~~~~~i~~~i~~~l~~---------------------------------------------------------------- 180 (446)
T PTZ00141 165 ERYDEIKKEVSAYLKK---------------------------------------------------------------- 180 (446)
T ss_pred HHHHHHHHHHHHHHHh----------------------------------------------------------------
Confidence 233333333332211
Q ss_pred hcHHHHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeeccCCCCChH------------HHHHHHHHhCCCCCCCCCCC
Q 007325 302 LDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQ------------PLLDAVVDYLPSPLDLPAMK 369 (608)
Q Consensus 302 ~dd~l~e~~l~~~~~~~~el~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~------------~Lld~i~~~lP~p~~~~~~~ 369 (608)
......-+|++++||++|.|+. .|+++|... +.|..
T Consensus 181 --------------------------~g~~~~~~~~ipiSa~~g~ni~~~~~~~~Wy~G~tL~~~l~~~-~~~~~----- 228 (446)
T PTZ00141 181 --------------------------VGYNPEKVPFIPISGWQGDNMIEKSDNMPWYKGPTLLEALDTL-EPPKR----- 228 (446)
T ss_pred --------------------------cCCCcccceEEEeecccCCCcccCCCCCcccchHHHHHHHhCC-CCCCc-----
Confidence 1001112688999999999985 489988654 43422
Q ss_pred CCCCCCccchhccccCCCCCeEEEEEEeeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCe
Q 007325 370 GTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKV 449 (608)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~ 449 (608)
+.+.||.+.|..++..++.|.+..|||.+|+|++||.|...+.+...+|.+|... ..++++
T Consensus 229 ---------------~~~~p~r~~I~~v~~v~g~Gtvv~G~V~~G~l~~Gd~v~i~P~~~~~~VksI~~~----~~~~~~ 289 (446)
T PTZ00141 229 ---------------PVDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPSGVTTEVKSVEMH----HEQLAE 289 (446)
T ss_pred ---------------CCCCCeEEEEEEEEecCCceEEEEEEEEcceEecCCEEEEccCCcEEEEEEEEec----CcccCE
Confidence 1368999999999999999999999999999999999999998888888888643 367999
Q ss_pred eecCCEEEE--cCCC--cccccceeccCC
Q 007325 450 ALAGDIIAL--AGLK--DTITGETLCDAD 474 (608)
Q Consensus 450 a~aGdIv~i--~gl~--~~~~GdtL~~~~ 474 (608)
|.|||.|++ .+++ ++..|++|++..
T Consensus 290 a~aG~~v~i~L~~i~~~~v~rG~vl~~~~ 318 (446)
T PTZ00141 290 AVPGDNVGFNVKNVSVKDIKRGYVASDSK 318 (446)
T ss_pred ECCCCEEEEEECCCCHHHcCCceEEecCC
Confidence 999999998 3432 378899999864
No 35
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=4e-35 Score=314.44 Aligned_cols=273 Identities=28% Similarity=0.409 Sum_probs=215.5
Q ss_pred CCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeec-cCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCC
Q 007325 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVH-EGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (608)
Q Consensus 87 ~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~-~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 165 (608)
.+...||+++||+|||||||+++|++... ..|+.. .+...+|..++|++||+|++.....+.+++.+++|||||||
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~---~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh 85 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLA---KEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGH 85 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHH---HhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCch
Confidence 34568999999999999999999974322 222211 12357899999999999999999888888899999999999
Q ss_pred CCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEE-EEEeCCCcCCCcHHHHHHHHHHhhCCccEEEec
Q 007325 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQL 244 (608)
Q Consensus 166 ~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~i-vviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~ 244 (608)
.+|...+..++..+|++++|||+.+|+..++.+++..+...++|.+ +|+||+|+...+ +..+.+.
T Consensus 86 ~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~--~~~~~~~------------ 151 (394)
T TIGR00485 86 ADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDE--ELLELVE------------ 151 (394)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHH--HHHHHHH------------
Confidence 9999999999999999999999999999999999999999999987 579999986421 1111110
Q ss_pred cCCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHHhcCCCCCHHHHHHH
Q 007325 245 PVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKL 324 (608)
Q Consensus 245 pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l~~~~~~~~el~~~ 324 (608)
+++.+.
T Consensus 152 --------------------------------------------------------------------------~~i~~~ 157 (394)
T TIGR00485 152 --------------------------------------------------------------------------MEVREL 157 (394)
T ss_pred --------------------------------------------------------------------------HHHHHH
Confidence 011111
Q ss_pred HHhhcccCcceeeeeeccCCCC--------ChHHHHHHHHHhCCCCCCCCCCCCCCCCCccchhccccCCCCCeEEEEEE
Q 007325 325 IRKGTIAGSFVPVLCGSAFKNK--------GVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFK 396 (608)
Q Consensus 325 l~~~~~~~~~~Pv~~~SA~~~~--------Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K 396 (608)
++........+|++++||++|. ++..|+++|.+++|.|.. +.+.||.++|+.
T Consensus 158 l~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~~~~~~--------------------~~~~p~r~~V~~ 217 (394)
T TIGR00485 158 LSEYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYIPTPER--------------------ETDKPFLMPIED 217 (394)
T ss_pred HHhcCCCccCccEEECccccccccCCchhHhHHHHHHHHHhcCCCCCC--------------------CCCCCeEEEEEE
Confidence 1111112234689999999875 467899999988887753 136899999999
Q ss_pred eeecCCCceEEEEEEecceeCCCCEEEeCC--CCceeecceEEEeecCceeecCeeecCCEEEE--cCCC--ccccccee
Q 007325 397 IMSDPFVGSLTFVRVYAGTLSAGSYVLNAN--KGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DTITGETL 470 (608)
Q Consensus 397 ~~~d~~~G~la~~RV~sG~l~~g~~v~~~~--~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~--~~~~GdtL 470 (608)
++.+++.|.+++|||.+|+|++||.|+..+ .++..+|++|... ..++++|.|||.|+| .+++ +++.|++|
T Consensus 218 vf~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~~~~~~VksI~~~----~~~~~~a~aGd~v~l~l~~i~~~~i~rG~vl 293 (394)
T TIGR00485 218 VFSITGRGTVVTGRVERGIVKVGEEVEIVGLKDTRKTTVTGVEMF----RKELDEGRAGDNVGLLLRGIKREEIERGMVL 293 (394)
T ss_pred EEeeCCceEEEEEEEEeeEEeCCCEEEEecCCCCcEEEEEEEEEC----CeEEEEECCCCEEEEEeCCccHHHCCccEEE
Confidence 999999999999999999999999999765 3566788888743 467899999999977 6663 48899999
Q ss_pred ccCC
Q 007325 471 CDAD 474 (608)
Q Consensus 471 ~~~~ 474 (608)
|+++
T Consensus 294 ~~~~ 297 (394)
T TIGR00485 294 AKPG 297 (394)
T ss_pred ecCC
Confidence 9864
No 36
>PLN00043 elongation factor 1-alpha; Provisional
Probab=100.00 E-value=5e-35 Score=316.30 Aligned_cols=272 Identities=26% Similarity=0.314 Sum_probs=218.1
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccce--ee-----------ccCCccccchhhhhhcceeEeecEEEEeecC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIG--EV-----------HEGTATMDWMEQEQERGITITSAATTTYWNK 154 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g--~~-----------~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~ 154 (608)
+...||+++||.|+|||||+.+|++.+|.+.+.+ ++ ...++++|+.++|++||+|++.....+.+++
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 3457999999999999999999999999766533 11 1124689999999999999999999999999
Q ss_pred eeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCC-------chhHHHHHHHHHhcCCCE-EEEEeCCCcCCC----
Q 007325 155 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-------EPQSETVWRQADKYGVPR-ICFVNKMDRLGA---- 222 (608)
Q Consensus 155 ~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~-------~~~t~~~~~~~~~~~~p~-ivviNK~D~~~~---- 222 (608)
+.++|+|||||.+|..++..+++.+|++|+|||+.+|. ..||+++|..+...++|. |+|+||||+...
T Consensus 85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~~~ 164 (447)
T PLN00043 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK 164 (447)
T ss_pred EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCchhhhH
Confidence 99999999999999999999999999999999999873 379999999999999975 778999998622
Q ss_pred -cHHHHHHHHHHhhCCccEEEeccCCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHh
Q 007325 223 -NFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVE 301 (608)
Q Consensus 223 -~~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~ 301 (608)
+++++++++++.++
T Consensus 165 ~~~~~i~~ei~~~l~----------------------------------------------------------------- 179 (447)
T PLN00043 165 ARYDEIVKEVSSYLK----------------------------------------------------------------- 179 (447)
T ss_pred HHHHHHHHHHHHHHH-----------------------------------------------------------------
Confidence 22333333332221
Q ss_pred hcHHHHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeeccCCCCChH------------HHHHHHHHhCCCCCCCCCCC
Q 007325 302 LDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQ------------PLLDAVVDYLPSPLDLPAMK 369 (608)
Q Consensus 302 ~dd~l~e~~l~~~~~~~~el~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~------------~Lld~i~~~lP~p~~~~~~~ 369 (608)
+.-....-+|++++||++|.|+. .|+++|.+ +|.|..
T Consensus 180 -------------------------~~g~~~~~~~~ipiSa~~G~ni~~~~~~~~Wy~g~tLl~~l~~-i~~p~~----- 228 (447)
T PLN00043 180 -------------------------KVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQ-INEPKR----- 228 (447)
T ss_pred -------------------------HcCCCcccceEEEEeccccccccccccCCcccchHHHHHHHhh-cCCCcc-----
Confidence 11000112478888999999874 48888865 554432
Q ss_pred CCCCCCccchhccccCCCCCeEEEEEEeeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCe
Q 007325 370 GTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKV 449 (608)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~ 449 (608)
..+.||.+.|..++..++.|.+..|||.+|++++||.|...+.+...+|..|... ..++++
T Consensus 229 ---------------~~~~plr~~I~~v~~~~g~G~vv~G~V~~G~l~~Gd~v~~~P~~~~~~VksI~~~----~~~v~~ 289 (447)
T PLN00043 229 ---------------PSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEMH----HESLQE 289 (447)
T ss_pred ---------------ccCCCcEEEEEEEEEeCCcEEEEEEEEECCEEeeCCEEEEcCCCCEEEEEEEEEC----CeEeCE
Confidence 1368999999999999999999999999999999999999998888888888643 478999
Q ss_pred eecCCEEEE--cCC--CcccccceeccCC
Q 007325 450 ALAGDIIAL--AGL--KDTITGETLCDAD 474 (608)
Q Consensus 450 a~aGdIv~i--~gl--~~~~~GdtL~~~~ 474 (608)
|.|||.+++ .++ +++..|++||+..
T Consensus 290 a~aGd~v~i~l~~~~~~~i~rG~vl~~~~ 318 (447)
T PLN00043 290 ALPGDNVGFNVKNVAVKDLKRGYVASNSK 318 (447)
T ss_pred ecCCCeEEEEECCCCHhhCCCccEEccCC
Confidence 999999998 444 3478999999863
No 37
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=100.00 E-value=2.9e-34 Score=318.30 Aligned_cols=304 Identities=24% Similarity=0.301 Sum_probs=235.6
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCe-eEEEEeCCCCC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKH-RINIIDTPGHV 166 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~-~i~liDTPG~~ 166 (608)
.+.++|+++||+|||||||+++|.... +. ....+|+|++.....+.|++. .++|||||||.
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~--------v~----------~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe 146 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTK--------VA----------QGEAGGITQHIGAYHVENEDGKMITFLDTPGHE 146 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCC--------cc----------cccCCceeecceEEEEEECCCcEEEEEECCCCc
Confidence 456899999999999999999995211 00 111357888888888888655 89999999999
Q ss_pred CchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCCcHHHHHHHHHHhhCCccEEEeccC
Q 007325 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPV 246 (608)
Q Consensus 167 df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~pi 246 (608)
+|...+.++++.+|++|+|+|+.+|+..|+.+.++.+...++|+++++||+|+.+++.+++.+.+++ ++.
T Consensus 147 ~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~~e~v~~~L~~-~g~--------- 216 (587)
T TIGR00487 147 AFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEANPDRVKQELSE-YGL--------- 216 (587)
T ss_pred chhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCCHHHHHHHHHH-hhh---------
Confidence 9999999999999999999999999999999999999999999999999999976655444333321 000
Q ss_pred CCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHHhcCCCCCHHHHHHHHH
Q 007325 247 GAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIR 326 (608)
Q Consensus 247 ~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l~~~~~~~~el~~~l~ 326 (608)
..+.|
T Consensus 217 -----------------------------------------------------------~~~~~---------------- 221 (587)
T TIGR00487 217 -----------------------------------------------------------VPEDW---------------- 221 (587)
T ss_pred -----------------------------------------------------------hHHhc----------------
Confidence 00000
Q ss_pred hhcccCcceeeeeeccCCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccchhccccCCCCCeEEEEEEeeecCCCceE
Q 007325 327 KGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSL 406 (608)
Q Consensus 327 ~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~~G~l 406 (608)
+...|++.+||++|.|+++|++.|.... ... ....+++.|+.++|+++..+++.|.+
T Consensus 222 -----~~~~~~v~iSAktGeGI~eLl~~I~~~~-~~~-----------------~l~~~~~~~~~~~V~ev~~~~g~G~v 278 (587)
T TIGR00487 222 -----GGDTIFVPVSALTGDGIDELLDMILLQS-EVE-----------------ELKANPNGQASGVVIEAQLDKGRGPV 278 (587)
T ss_pred -----CCCceEEEEECCCCCChHHHHHhhhhhh-hhc-----------------cccCCCCCCceeEEEEEEEeCCCcEE
Confidence 1124788899999999999999997421 000 01234578999999999999999999
Q ss_pred EEEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCeeecCCEEEEcCCCcc-cccceeccCCCC---------
Q 007325 407 TFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDT-ITGETLCDADHP--------- 476 (608)
Q Consensus 407 a~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~-~~GdtL~~~~~~--------- 476 (608)
++++|++|+|++||.|.+.+. ..+|..|+ ......+++|.||++|.|.|++++ .+||+|+...+.
T Consensus 279 ~~~~V~~GtL~~Gd~iv~~~~--~~kVr~l~---~~~g~~v~~a~~g~~v~i~Gl~~~p~aGd~~~~~~~e~~a~~~~~~ 353 (587)
T TIGR00487 279 ATVLVQSGTLRVGDIVVVGAA--YGRVRAMI---DENGKSVKEAGPSKPVEILGLSDVPAAGDEFIVFKDEKDARLVAEK 353 (587)
T ss_pred EEEEEEeCEEeCCCEEEECCC--ccEEEEEE---CCCCCCCCEECCCCEEEEeCCCCCCCCCCEEEEcCCHHHHHHHHHH
Confidence 999999999999999998763 23454544 434467899999999999999986 899999732111
Q ss_pred ---------------cccCCCCC-----CCceEEEEEEeCCCCCHHHHHHHHHHHHHhCCeeEEEE
Q 007325 477 ---------------ILLERMDF-----PDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSR 522 (608)
Q Consensus 477 ---------------~~l~~~~~-----~~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDPsl~v~~ 522 (608)
..++.+.. ..|.+.+.|++...+..+.|.++|+++..+++++.+-.
T Consensus 354 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viikad~~Gs~eal~~~l~~~~~~~~~~~v~~ 419 (587)
T TIGR00487 354 RAGKLRQKALSRSVKVTLDNLFEQIKEGELKELNIILKADVQGSLEAIKNSLEKLNNEEVKVKVIH 419 (587)
T ss_pred HHHHHHHHhhhhccccchhHhhhhhhccCCceEEEEEEeCCcchHHHHHHHHHhhcccCCeEEEEE
Confidence 11222211 24889999999999999999999999999999998764
No 38
>PRK12735 elongation factor Tu; Reviewed
Probab=100.00 E-value=1.3e-34 Score=310.31 Aligned_cols=272 Identities=27% Similarity=0.390 Sum_probs=215.1
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeec-cCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVH-EGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~-~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 166 (608)
+...||+++||+|||||||+++|++.... .+... ...+.+|+.++|++||+|++.....+.+++.+++|+|||||.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~---~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~ 86 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAK---KGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA 86 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhh---cCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH
Confidence 34579999999999999999999864331 12111 123478999999999999999998888888999999999999
Q ss_pred CchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEE-EEEeCCCcCCCcHHHHHHHHHHhhCCccEEEecc
Q 007325 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLP 245 (608)
Q Consensus 167 df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~i-vviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~p 245 (608)
+|...+.+++..+|++++|+|+.+|+..++++++..+...++|.+ +|+||+|+...+ +..+.+.
T Consensus 87 ~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~--~~~~~~~------------- 151 (396)
T PRK12735 87 DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDE--ELLELVE------------- 151 (396)
T ss_pred HHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchH--HHHHHHH-------------
Confidence 999999999999999999999999999999999999999999977 579999986321 1111110
Q ss_pred CCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHHhcCCCCCHHHHHHHH
Q 007325 246 VGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLI 325 (608)
Q Consensus 246 i~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l~~~~~~~~el~~~l 325 (608)
+++...+
T Consensus 152 -------------------------------------------------------------------------~ei~~~l 158 (396)
T PRK12735 152 -------------------------------------------------------------------------MEVRELL 158 (396)
T ss_pred -------------------------------------------------------------------------HHHHHHH
Confidence 0111111
Q ss_pred HhhcccCcceeeeeeccCCC----------CChHHHHHHHHHhCCCCCCCCCCCCCCCCCccchhccccCCCCCeEEEEE
Q 007325 326 RKGTIAGSFVPVLCGSAFKN----------KGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAF 395 (608)
Q Consensus 326 ~~~~~~~~~~Pv~~~SA~~~----------~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~ 395 (608)
+.....+..+|++++||++| .|+..|+++|.+.+|.|.. +.++||.++|.
T Consensus 159 ~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~~p~~--------------------~~~~p~r~~I~ 218 (396)
T PRK12735 159 SKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIPEPER--------------------AIDKPFLMPIE 218 (396)
T ss_pred HHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCCCCCc--------------------cCCCCeEEEEE
Confidence 11111122368888999998 4789999999999997743 13689999999
Q ss_pred EeeecCCCceEEEEEEecceeCCCCEEEeCCC--CceeecceEEEeecCceeecCeeecCCEEEE--cCCC--cccccce
Q 007325 396 KIMSDPFVGSLTFVRVYAGTLSAGSYVLNANK--GKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DTITGET 469 (608)
Q Consensus 396 K~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~--~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~--~~~~Gdt 469 (608)
.++..++.|.++.|||.+|++++||.|+..+. ++..+|..|... .+++++|.|||.+++ .|++ ++..|++
T Consensus 219 ~~f~v~g~Gtvv~G~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~~----~~~v~~a~aGd~v~l~L~~i~~~~i~rG~v 294 (396)
T PRK12735 219 DVFSISGRGTVVTGRVERGIVKVGDEVEIVGIKETQKTTVTGVEMF----RKLLDEGQAGDNVGVLLRGTKREDVERGQV 294 (396)
T ss_pred EEEecCCceEEEEEEEEecEEeCCCEEEEecCCCCeEEEEEEEEEC----CeEeCEECCCCEEEEEeCCCcHHHCCcceE
Confidence 99999999999999999999999999997764 356678887642 478999999999998 6664 4889999
Q ss_pred eccCC
Q 007325 470 LCDAD 474 (608)
Q Consensus 470 L~~~~ 474 (608)
||+++
T Consensus 295 l~~~~ 299 (396)
T PRK12735 295 LAKPG 299 (396)
T ss_pred EEcCC
Confidence 99875
No 39
>PRK00049 elongation factor Tu; Reviewed
Probab=100.00 E-value=2.1e-34 Score=308.44 Aligned_cols=273 Identities=27% Similarity=0.392 Sum_probs=215.1
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 167 (608)
+...||+++||+|||||||+++|++....... +. ......+|+.++|++||+|++.....+.+++.+++|+|||||.+
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~-~~-~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~ 87 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGG-AE-AKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHAD 87 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccC-Cc-ccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHH
Confidence 44689999999999999999999864321110 11 11224789999999999999999988888899999999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEE-EEEeCCCcCCCcHHHHHHHHHHhhCCccEEEeccC
Q 007325 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPV 246 (608)
Q Consensus 168 f~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~i-vviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~pi 246 (608)
|...+..++..+|++++|||+.+|+..++++++..+...++|++ +++||+|+...+ +..+.+.
T Consensus 88 f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~--~~~~~~~-------------- 151 (396)
T PRK00049 88 YVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDE--ELLELVE-------------- 151 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchH--HHHHHHH--------------
Confidence 99999999999999999999999999999999999999999986 589999986421 1111110
Q ss_pred CCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHHhcCCCCCHHHHHHHHH
Q 007325 247 GAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIR 326 (608)
Q Consensus 247 ~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l~~~~~~~~el~~~l~ 326 (608)
+++.+.+.
T Consensus 152 ------------------------------------------------------------------------~~i~~~l~ 159 (396)
T PRK00049 152 ------------------------------------------------------------------------MEVRELLS 159 (396)
T ss_pred ------------------------------------------------------------------------HHHHHHHH
Confidence 01111111
Q ss_pred hhcccCcceeeeeeccCCCC----------ChHHHHHHHHHhCCCCCCCCCCCCCCCCCccchhccccCCCCCeEEEEEE
Q 007325 327 KGTIAGSFVPVLCGSAFKNK----------GVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFK 396 (608)
Q Consensus 327 ~~~~~~~~~Pv~~~SA~~~~----------Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K 396 (608)
........+|++++||+++. |+..|+++|.+++|.|.. ..+.||.+.|..
T Consensus 160 ~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~~p~~--------------------~~~~p~r~~I~~ 219 (396)
T PRK00049 160 KYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIPTPER--------------------AIDKPFLMPIED 219 (396)
T ss_pred hcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCCCCCC--------------------CCCCCeEEEEEE
Confidence 11111234688889998864 678999999999987743 136899999999
Q ss_pred eeecCCCceEEEEEEecceeCCCCEEEeCCC--CceeecceEEEeecCceeecCeeecCCEEEE--cCC--Cccccccee
Q 007325 397 IMSDPFVGSLTFVRVYAGTLSAGSYVLNANK--GKKERIGRLLEMHANSREDVKVALAGDIIAL--AGL--KDTITGETL 470 (608)
Q Consensus 397 ~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~--~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl--~~~~~GdtL 470 (608)
++..+++|.++.|+|.+|++++||+|+..+. ++..+|++|... .+++++|.|||.+++ .++ +++..|++|
T Consensus 220 ~f~v~g~G~Vv~G~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~~----~~~~~~a~~Gd~v~l~l~~i~~~~i~~G~vl 295 (396)
T PRK00049 220 VFSISGRGTVVTGRVERGIIKVGEEVEIVGIRDTQKTTVTGVEMF----RKLLDEGQAGDNVGALLRGIKREDVERGQVL 295 (396)
T ss_pred EEeeCCceEEEEEEEeeeEEecCCEEEEeecCCCceEEEEEEEEC----CcEeCEEcCCCEEEEEeCCCCHHHCCcceEE
Confidence 9999999999999999999999999987654 566778887643 368999999999998 665 348899999
Q ss_pred ccCC
Q 007325 471 CDAD 474 (608)
Q Consensus 471 ~~~~ 474 (608)
|+++
T Consensus 296 ~~~~ 299 (396)
T PRK00049 296 AKPG 299 (396)
T ss_pred ecCC
Confidence 9875
No 40
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=100.00 E-value=1.6e-34 Score=313.28 Aligned_cols=273 Identities=27% Similarity=0.348 Sum_probs=219.8
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccc------------eee-ccCCccccchhhhhhcceeEeecEEEEeecC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKI------------GEV-HEGTATMDWMEQEQERGITITSAATTTYWNK 154 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~------------g~~-~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~ 154 (608)
+...||+++||+|||||||+++|++..|.+... |.. ..+++++|+.++|++||+|++.....+.+++
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 345799999999999999999999998887543 222 3345689999999999999999999999999
Q ss_pred eeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCC--CCchhHHHHHHHHHhcCCC-EEEEEeCCCcCCCcH---HHHH
Q 007325 155 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVA--GVEPQSETVWRQADKYGVP-RICFVNKMDRLGANF---FRTR 228 (608)
Q Consensus 155 ~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~--g~~~~t~~~~~~~~~~~~p-~ivviNK~D~~~~~~---~~~~ 228 (608)
+.++|||||||.+|...+..+++.+|++|+|||+++ ++..++.+++..+...++| +++|+||+|+...+. ....
T Consensus 84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~ 163 (425)
T PRK12317 84 YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYEEVK 163 (425)
T ss_pred eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHHHHHH
Confidence 999999999999999999999999999999999999 9999999999998888874 788999999875321 1111
Q ss_pred HHHHHhhCCccEEEeccCCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHH
Q 007325 229 DMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAME 308 (608)
Q Consensus 229 ~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e 308 (608)
+++++.
T Consensus 164 ~~i~~~-------------------------------------------------------------------------- 169 (425)
T PRK12317 164 EEVSKL-------------------------------------------------------------------------- 169 (425)
T ss_pred HHHHHH--------------------------------------------------------------------------
Confidence 222111
Q ss_pred HHhcCCCCCHHHHHHHHHhhcccCcceeeeeeccCCCCChHH------------HHHHHHHhCCCCCCCCCCCCCCCCCc
Q 007325 309 SYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQP------------LLDAVVDYLPSPLDLPAMKGTDPENP 376 (608)
Q Consensus 309 ~~l~~~~~~~~el~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~------------Lld~i~~~lP~p~~~~~~~~~~~~~~ 376 (608)
+...-.....+|++++||++|.|+++ |+++|.. +|.|..
T Consensus 170 ----------------l~~~g~~~~~~~ii~iSA~~g~gi~~~~~~~~wy~g~~L~~~l~~-~~~~~~------------ 220 (425)
T PRK12317 170 ----------------LKMVGYKPDDIPFIPVSAFEGDNVVKKSENMPWYNGPTLLEALDN-LKPPEK------------ 220 (425)
T ss_pred ----------------HHhhCCCcCcceEEEeecccCCCccccccCCCcccHHHHHHHHhc-CCCCcc------------
Confidence 11000011125789999999999975 8888754 565532
Q ss_pred cchhccccCCCCCeEEEEEEeeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCeeecCCEE
Q 007325 377 EATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDII 456 (608)
Q Consensus 377 ~~~~~~~~~~~~p~~~~V~K~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv 456 (608)
+.+.||.+.|..++..++.|.+..|+|.+|+|++||.|+..+.+...+|++|... ..++++|.|||.|
T Consensus 221 --------~~~~p~r~~i~~~~~~~g~G~vv~G~v~~G~v~~Gd~v~i~P~~~~~~VksI~~~----~~~~~~a~aG~~v 288 (425)
T PRK12317 221 --------PTDKPLRIPIQDVYSISGVGTVPVGRVETGVLKVGDKVVFMPAGVVGEVKSIEMH----HEELPQAEPGDNI 288 (425)
T ss_pred --------ccCCCcEEEEEEEEeeCCCeEEEEEEEeeccEecCCEEEECCCCCeEEEEEEEEC----CcccCEECCCCeE
Confidence 1368999999999999999999999999999999999999988888888888643 4679999999999
Q ss_pred EE--cCCC--cccccceeccCCC
Q 007325 457 AL--AGLK--DTITGETLCDADH 475 (608)
Q Consensus 457 ~i--~gl~--~~~~GdtL~~~~~ 475 (608)
++ .+++ ++..|++|+++..
T Consensus 289 ~i~l~~~~~~~i~rG~vl~~~~~ 311 (425)
T PRK12317 289 GFNVRGVGKKDIKRGDVCGHPDN 311 (425)
T ss_pred EEEECCCCHHHccCccEecCCCC
Confidence 87 4543 4789999998754
No 41
>PLN03127 Elongation factor Tu; Provisional
Probab=100.00 E-value=9e-34 Score=306.26 Aligned_cols=274 Identities=27% Similarity=0.412 Sum_probs=212.3
Q ss_pred CCCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCC-ccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCC
Q 007325 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGT-ATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG 164 (608)
Q Consensus 86 ~~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~-~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 164 (608)
..+...||+++||+|||||||+++|+... ...|...... ..+|..++|++||+|++.....+.+++.+++|+||||
T Consensus 57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~---~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPG 133 (447)
T PLN03127 57 RTKPHVNVGTIGHVDHGKTTLTAAITKVL---AEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPG 133 (447)
T ss_pred cCCceEEEEEECcCCCCHHHHHHHHHhHH---HHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCC
Confidence 34567899999999999999999996321 2222221112 2689999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCE-EEEEeCCCcCCCcHHHHHHHHHHhhCCccEEEe
Q 007325 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQ 243 (608)
Q Consensus 165 ~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~-ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ 243 (608)
|.+|...+..++..+|++++|||+.+|+..|+++++..+...++|. |+++||+|+...+ +..+.+.+
T Consensus 134 h~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~--~~~~~i~~---------- 201 (447)
T PLN03127 134 HADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDE--ELLELVEM---------- 201 (447)
T ss_pred ccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHH--HHHHHHHH----------
Confidence 9999999999999999999999999999999999999999999996 6789999986421 11111110
Q ss_pred ccCCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHHhcCCCCCHHHHHH
Q 007325 244 LPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKK 323 (608)
Q Consensus 244 ~pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l~~~~~~~~el~~ 323 (608)
++.+
T Consensus 202 ----------------------------------------------------------------------------~i~~ 205 (447)
T PLN03127 202 ----------------------------------------------------------------------------ELRE 205 (447)
T ss_pred ----------------------------------------------------------------------------HHHH
Confidence 0111
Q ss_pred HHHhhcccCcceeeeeeccC---CCCC-------hHHHHHHHHHhCCCCCCCCCCCCCCCCCccchhccccCCCCCeEEE
Q 007325 324 LIRKGTIAGSFVPVLCGSAF---KNKG-------VQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGL 393 (608)
Q Consensus 324 ~l~~~~~~~~~~Pv~~~SA~---~~~G-------i~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 393 (608)
.+...-.....+|++++||+ ++.| +..|+++|.+++|.|.. +.+.||.+.
T Consensus 206 ~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~p~r--------------------~~~~pfr~~ 265 (447)
T PLN03127 206 LLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPEPVR--------------------VLDKPFLMP 265 (447)
T ss_pred HHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCCCCCc--------------------ccccceEee
Confidence 11110011223677777775 4444 78999999999997743 135899999
Q ss_pred EEEeeecCCCceEEEEEEecceeCCCCEEEeCCC----CceeecceEEEeecCceeecCeeecCCEEEE--cCCC--ccc
Q 007325 394 AFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANK----GKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DTI 465 (608)
Q Consensus 394 V~K~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~----~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~--~~~ 465 (608)
|..++..+++|.+..|||.+|++++||.|++.+. +...+|..|... ..++++|.|||.+++ .|++ ++.
T Consensus 266 I~~vf~v~g~GtVvtG~v~~G~i~~Gd~v~i~p~~~~g~~~~~VksI~~~----~~~v~~a~aGd~v~l~L~~i~~~~i~ 341 (447)
T PLN03127 266 IEDVFSIQGRGTVATGRVEQGTIKVGEEVEIVGLRPGGPLKTTVTGVEMF----KKILDQGQAGDNVGLLLRGLKREDVQ 341 (447)
T ss_pred EEEEEEcCCceEEEEEEEEccEEecCCEEEEcccCCCCcEEEEEEEEEEE----CcEeCEEcCCCEEEEEeCCCCHHHCC
Confidence 9999999999999999999999999999987643 346788888644 357899999999998 5654 488
Q ss_pred ccceeccCC
Q 007325 466 TGETLCDAD 474 (608)
Q Consensus 466 ~GdtL~~~~ 474 (608)
.|++||+++
T Consensus 342 rG~Vl~~~~ 350 (447)
T PLN03127 342 RGQVICKPG 350 (447)
T ss_pred CccEEecCC
Confidence 999999863
No 42
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=100.00 E-value=7.5e-34 Score=305.17 Aligned_cols=270 Identities=24% Similarity=0.268 Sum_probs=206.6
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCccc--ceeec-----cC--------CccccchhhhhhcceeEeecEEEEeecCee
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYK--IGEVH-----EG--------TATMDWMEQEQERGITITSAATTTYWNKHR 156 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~--~g~~~-----~g--------~~~~d~~~~e~~~giTi~~~~~~~~~~~~~ 156 (608)
+|+++||+|||||||+++|++.+|.+.. .++++ .| ++++|+.++|++||+|++.....+.|++++
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~ 81 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKRK 81 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCeE
Confidence 7999999999999999999999998765 33322 33 358999999999999999999999999999
Q ss_pred EEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCC-EEEEEeCCCcCCCcHHHHHHHHHHhh
Q 007325 157 INIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGANFFRTRDMIVTNL 235 (608)
Q Consensus 157 i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p-~ivviNK~D~~~~~~~~~~~~i~~~l 235 (608)
++|||||||.+|..++..++..+|++|+|||+.+|+..|+++++..+...++| +++|+||||+...+. +.++++.+.
T Consensus 82 ~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~~-~~~~~i~~~- 159 (406)
T TIGR02034 82 FIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYDE-EVFENIKKD- 159 (406)
T ss_pred EEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccchH-HHHHHHHHH-
Confidence 99999999999999999999999999999999999999999999999988886 577999999865331 111211111
Q ss_pred CCccEEEeccCCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHHhcCCC
Q 007325 236 GAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNE 315 (608)
Q Consensus 236 ~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l~~~~ 315 (608)
T Consensus 160 -------------------------------------------------------------------------------- 159 (406)
T TIGR02034 160 -------------------------------------------------------------------------------- 159 (406)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCHHHHHHHHHhhcccCcceeeeeeccCCCCChHH------------HHHHHHHhCCCCCCCCCCCCCCCCCccchhccc
Q 007325 316 PDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQP------------LLDAVVDYLPSPLDLPAMKGTDPENPEATLERA 383 (608)
Q Consensus 316 ~~~~el~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~------------Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~ 383 (608)
+...++... ...+|++.+||++|.|+.. |+++|.. +|.|..
T Consensus 160 -----~~~~~~~~~--~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~L~~-~~~~~~------------------- 212 (406)
T TIGR02034 160 -----YLAFAEQLG--FRDVTFIPLSALKGDNVVSRSESMPWYSGPTLLEILET-VEVERD------------------- 212 (406)
T ss_pred -----HHHHHHHcC--CCCccEEEeecccCCCCcccccCCCccchhHHHHHHHh-cCCCCC-------------------
Confidence 001111100 0124788889999999874 6777755 444422
Q ss_pred cCCCCCeEEEEEEeeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCeeecCCEEEEcC--C
Q 007325 384 ASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAG--L 461 (608)
Q Consensus 384 ~~~~~p~~~~V~K~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~g--l 461 (608)
..+.||.+.|..++...+.+.-..|+|.+|+|++||+|+..+.+...+|++|... ..++++|.|||.+++.- .
T Consensus 213 -~~~~p~r~~i~~v~~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~----~~~~~~a~~G~~v~l~l~~~ 287 (406)
T TIGR02034 213 -AQDLPLRFPVQYVNRPNLDFRGYAGTIASGSVHVGDEVVVLPSGRSSRVARIVTF----DGDLEQARAGQAVTLTLDDE 287 (406)
T ss_pred -cCCCCcccceEEEeecCCCcEEEEEEEecceeecCCEEEEeCCCcEEEEEEEEEC----CcccCEeCCCCEEEEEECCc
Confidence 1257887766665432221222569999999999999999888888889988643 25689999999999843 3
Q ss_pred CcccccceeccCCC
Q 007325 462 KDTITGETLCDADH 475 (608)
Q Consensus 462 ~~~~~GdtL~~~~~ 475 (608)
+++..|++||+++.
T Consensus 288 ~~i~rG~vl~~~~~ 301 (406)
T TIGR02034 288 IDISRGDLLAAADS 301 (406)
T ss_pred cccCCccEEEcCCC
Confidence 44788999998764
No 43
>CHL00189 infB translation initiation factor 2; Provisional
Probab=100.00 E-value=1.8e-33 Score=315.70 Aligned_cols=298 Identities=22% Similarity=0.298 Sum_probs=233.1
Q ss_pred CCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeec----CeeEEEEeC
Q 007325 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN----KHRINIIDT 162 (608)
Q Consensus 87 ~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~----~~~i~liDT 162 (608)
..+.|+|+|+||+|||||||+++|....... ...+|+|.......+.|. +..++||||
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~------------------~e~~GiTq~i~~~~v~~~~~~~~~kItfiDT 302 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQ------------------KEAGGITQKIGAYEVEFEYKDENQKIVFLDT 302 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCcc------------------ccCCccccccceEEEEEEecCCceEEEEEEC
Confidence 3577999999999999999999996433211 122567777766666653 589999999
Q ss_pred CCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCCcHHHHHHHHHHhhCCccEEE
Q 007325 163 PGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVV 242 (608)
Q Consensus 163 PG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~ 242 (608)
|||.+|...+.++++.+|++|+|||+.+|++.++.+.|+.+...++|+|+|+||+|+...+.+++.+++... +.
T Consensus 303 PGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~-~l----- 376 (742)
T CHL00189 303 PGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANANTERIKQQLAKY-NL----- 376 (742)
T ss_pred CcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccCHHHHHHHHHHh-cc-----
Confidence 999999999999999999999999999999999999999999999999999999999776544433333210 00
Q ss_pred eccCCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHHhcCCCCCHHHHH
Q 007325 243 QLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIK 322 (608)
Q Consensus 243 ~~pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l~~~~~~~~el~ 322 (608)
+ .++
T Consensus 377 ---------------------------------------------------------------l-----------~e~-- 380 (742)
T CHL00189 377 ---------------------------------------------------------------I-----------PEK-- 380 (742)
T ss_pred ---------------------------------------------------------------c-----------hHh--
Confidence 0 000
Q ss_pred HHHHhhcccCcceeeeeeccCCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccchhccccCCCCCeEEEEEEeeecCC
Q 007325 323 KLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPF 402 (608)
Q Consensus 323 ~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~ 402 (608)
.+..+|++++||++|.|+++|+++|..+...+. ..++++.|+.++|+++..|++
T Consensus 381 --------~g~~vpvv~VSAktG~GIdeLle~I~~l~e~~~------------------lk~~~~~~~~g~V~e~~iD~~ 434 (742)
T CHL00189 381 --------WGGDTPMIPISASQGTNIDKLLETILLLAEIED------------------LKADPTQLAQGIILEAHLDKT 434 (742)
T ss_pred --------hCCCceEEEEECCCCCCHHHHHHhhhhhhhhhc------------------ccCCCCCCceEEEEEEEEcCC
Confidence 123578999999999999999999987643111 123457899999999999999
Q ss_pred CceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCeeecCCEEEEcCCCc-ccccceeccCCCCc----
Q 007325 403 VGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKD-TITGETLCDADHPI---- 477 (608)
Q Consensus 403 ~G~la~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~-~~~GdtL~~~~~~~---- 477 (608)
.|.+++++|++|+|+.||.|++.+ +.++|+.|.+....++++|.|||+|+|.|+++ ..+||+|....+.-
T Consensus 435 ~G~V~~~~V~sGtLr~GD~vv~g~-----~~gkVr~m~~~~~~~v~~a~pgdiV~I~gl~~~~~~Gd~l~v~~~e~~a~~ 509 (742)
T CHL00189 435 KGPVATILVQNGTLHIGDIIVIGT-----SYAKIRGMINSLGNKINLATPSSVVEIWGLSSVPATGEHFQVFNSEKEAKL 509 (742)
T ss_pred CceEEEEEEEcCEEecCCEEEECC-----cceEEEEEEcCCCcCccEEcCCCceEecCcccCCCCCCEEEEeCCHHHHHH
Confidence 999999999999999999999876 45788888888889999999999999999954 77899985322110
Q ss_pred -----------------ccCCC-----CCCCceEEEEEEeCCCCCHHHHHHHHHHHHHhC
Q 007325 478 -----------------LLERM-----DFPDPVIKVAIEPKTKADIDKMANGLIKLAQED 515 (608)
Q Consensus 478 -----------------~l~~~-----~~~~Pv~~~aiep~~~~d~~kL~~aL~~L~~eD 515 (608)
.+..+ .-..+.+.+-|.+...+..+.|..+|.++..+.
T Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~EAi~~~l~~~~~~~ 569 (742)
T CHL00189 510 KIIKNKENNKKDTTKRITLSTTKTINKKDNKKQINLIIKTDTQGSIEAIINSISQIPQKK 569 (742)
T ss_pred HHHHHHHHHHHhhhcccchHHHHHHhhhcCCceeeEEEEeCCcchHHHHHHHHHhcCCCc
Confidence 00000 012467889999999999999999999885544
No 44
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=100.00 E-value=4.6e-33 Score=301.90 Aligned_cols=276 Identities=28% Similarity=0.356 Sum_probs=215.8
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccce-------eecc------CCccccchhhhhhcceeEeecEEEEeecC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIG-------EVHE------GTATMDWMEQEQERGITITSAATTTYWNK 154 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g-------~~~~------g~~~~d~~~~e~~~giTi~~~~~~~~~~~ 154 (608)
+...||+++||+|+|||||+++|++.+|.+.... .... ...++|+.++|+++|+|++.....+.+++
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK 84 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence 4468999999999999999999999888765321 0011 23579999999999999999999999999
Q ss_pred eeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCC---CchhHHHHHHHHHhcCC-CEEEEEeCCCcCCCcHHHHHHH
Q 007325 155 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG---VEPQSETVWRQADKYGV-PRICFVNKMDRLGANFFRTRDM 230 (608)
Q Consensus 155 ~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g---~~~~t~~~~~~~~~~~~-p~ivviNK~D~~~~~~~~~~~~ 230 (608)
..++|||||||.+|...+..+++.+|++|+|||++++ ...++.+++..+...++ |+++|+||+|+...+.++ ++.
T Consensus 85 ~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~-~~~ 163 (426)
T TIGR00483 85 YEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEE-FEA 163 (426)
T ss_pred eEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHH-HHH
Confidence 9999999999999999999999999999999999998 77888888777777775 577899999986432110 111
Q ss_pred HHHhhCCccEEEeccCCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHH
Q 007325 231 IVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESY 310 (608)
Q Consensus 231 i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~ 310 (608)
+.
T Consensus 164 ~~------------------------------------------------------------------------------ 165 (426)
T TIGR00483 164 IK------------------------------------------------------------------------------ 165 (426)
T ss_pred HH------------------------------------------------------------------------------
Confidence 00
Q ss_pred hcCCCCCHHHHHHHHHhhcccCcceeeeeeccCCCCChHH------------HHHHHHHhCCCCCCCCCCCCCCCCCccc
Q 007325 311 LEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQP------------LLDAVVDYLPSPLDLPAMKGTDPENPEA 378 (608)
Q Consensus 311 l~~~~~~~~el~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~------------Lld~i~~~lP~p~~~~~~~~~~~~~~~~ 378 (608)
+++.+.++..-.....+|++.+||++|.|+.+ |+++|.+ +|.|..
T Consensus 166 --------~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~~~~w~~g~~l~~~l~~-~~~~~~-------------- 222 (426)
T TIGR00483 166 --------KEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSENTPWYKGKTLLEALDA-LEPPEK-------------- 222 (426)
T ss_pred --------HHHHHHHHHcCCCcccceEEEeeccccccccccccCCccccchHHHHHHhc-CCCCCC--------------
Confidence 01111111111111235788999999999874 8899854 554432
Q ss_pred hhccccCCCCCeEEEEEEeeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCeeecCCEEEE
Q 007325 379 TLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL 458 (608)
Q Consensus 379 ~~~~~~~~~~p~~~~V~K~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i 458 (608)
+.+.||.+.|..++..++.|.++.|||.+|+++.||.|.+.+.+...+|++|... ..++++|.|||.+++
T Consensus 223 ------~~~~p~r~~i~~v~~~~g~G~vv~G~v~~G~i~~gd~v~i~P~~~~~~VksI~~~----~~~~~~a~aG~~v~i 292 (426)
T TIGR00483 223 ------PTDKPLRIPIQDVYSITGVGTVPVGRVETGVLKPGDKVVFEPAGVSGEVKSIEMH----HEQIEQAEPGDNIGF 292 (426)
T ss_pred ------ccCCCcEEEEEEEEecCCCeEEEEEEEccceeecCCEEEECCCCcEEEEEEEEEC----CcccCEEcCCCEEEE
Confidence 1368999999999999999999999999999999999999998888889888643 367999999999988
Q ss_pred --cCC--CcccccceeccCCC
Q 007325 459 --AGL--KDTITGETLCDADH 475 (608)
Q Consensus 459 --~gl--~~~~~GdtL~~~~~ 475 (608)
.++ ++++.|++|+++..
T Consensus 293 ~l~~i~~~~i~rG~vl~~~~~ 313 (426)
T TIGR00483 293 NVRGVSKKDIRRGDVCGHPDN 313 (426)
T ss_pred EECCCChhhcccceEEecCCC
Confidence 554 34889999998654
No 45
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=100.00 E-value=6.6e-33 Score=302.25 Aligned_cols=276 Identities=25% Similarity=0.271 Sum_probs=209.0
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCccc--ceeec-----cC--------CccccchhhhhhcceeEeecEEEEee
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYK--IGEVH-----EG--------TATMDWMEQEQERGITITSAATTTYW 152 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~--~g~~~-----~g--------~~~~d~~~~e~~~giTi~~~~~~~~~ 152 (608)
+...+|+++||+|+|||||+++|++.+|.+.. .+++. .| +.++|+.++|++||+|++.....+.+
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 45589999999999999999999999998765 22222 23 34899999999999999999999999
Q ss_pred cCeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCC-CEEEEEeCCCcCCCcHHHHHHHH
Q 007325 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGV-PRICFVNKMDRLGANFFRTRDMI 231 (608)
Q Consensus 153 ~~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~-p~ivviNK~D~~~~~~~~~~~~i 231 (608)
++++++|||||||.+|..++..++..+|++|+|||+.+|+..||++++..+...++ |+++|+||+|+...+. ..++++
T Consensus 105 ~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~~-~~~~~i 183 (474)
T PRK05124 105 EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYSE-EVFERI 183 (474)
T ss_pred CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccccchh-HHHHHH
Confidence 99999999999999999999999999999999999999999999999999888886 4678999999865331 111111
Q ss_pred HHhhCCccEEEeccCCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHHh
Q 007325 232 VTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYL 311 (608)
Q Consensus 232 ~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l 311 (608)
.+.
T Consensus 184 ~~~----------------------------------------------------------------------------- 186 (474)
T PRK05124 184 RED----------------------------------------------------------------------------- 186 (474)
T ss_pred HHH-----------------------------------------------------------------------------
Confidence 110
Q ss_pred cCCCCCHHHHHHHHHhhcccCcceeeeeeccCCCCChHH------------HHHHHHHhCCCCCCCCCCCCCCCCCccch
Q 007325 312 EGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQP------------LLDAVVDYLPSPLDLPAMKGTDPENPEAT 379 (608)
Q Consensus 312 ~~~~~~~~el~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~------------Lld~i~~~lP~p~~~~~~~~~~~~~~~~~ 379 (608)
+...+.... .....|++++||++|.|+.. |++.| +.+|.|..
T Consensus 187 ---------l~~~~~~~~-~~~~~~iipvSA~~g~ni~~~~~~~~wy~G~tLl~~L-~~i~~~~~--------------- 240 (474)
T PRK05124 187 ---------YLTFAEQLP-GNLDIRFVPLSALEGDNVVSQSESMPWYSGPTLLEVL-ETVDIQRV--------------- 240 (474)
T ss_pred ---------HHHHHHhcC-CCCCceEEEEEeecCCCcccccccccccchhhHHHHH-hhcCCCCC---------------
Confidence 000011000 01235788899999999864 56644 45554432
Q ss_pred hccccCCCCCeEEEEEEeeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCeeecCCEEEEc
Q 007325 380 LERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALA 459 (608)
Q Consensus 380 ~~~~~~~~~p~~~~V~K~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~ 459 (608)
..+.|+.+.|..++...+...-..|+|.+|+|+.||+|+..+.+...+|++|.... .++++|.|||.|+|.
T Consensus 241 -----~~~~p~r~~I~~v~~~~~~~~g~~G~V~sG~l~~Gd~v~i~P~~~~~~VksI~~~~----~~v~~A~aG~~V~l~ 311 (474)
T PRK05124 241 -----VDAQPFRFPVQYVNRPNLDFRGYAGTLASGVVKVGDRVKVLPSGKESNVARIVTFD----GDLEEAFAGEAITLV 311 (474)
T ss_pred -----CCCCCceeeEEEEEecCCcccceEEEEEeEEEecCCEEEEecCCceEEEEEEEEcC----ccccCcCCCCEEEEE
Confidence 13578888887765432211124599999999999999999988888899987443 468999999999984
Q ss_pred C--CCcccccceeccCCCC
Q 007325 460 G--LKDTITGETLCDADHP 476 (608)
Q Consensus 460 g--l~~~~~GdtL~~~~~~ 476 (608)
- ..++..||+||+++.+
T Consensus 312 L~~~~~i~rG~VL~~~~~~ 330 (474)
T PRK05124 312 LEDEIDISRGDLLVAADEA 330 (474)
T ss_pred eCCccccCCccEEECCCCC
Confidence 3 3457899999987544
No 46
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-32 Score=281.93 Aligned_cols=274 Identities=27% Similarity=0.360 Sum_probs=217.9
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccc------------eee-ccCCccccchhhhhhcceeEeecEEEEeecC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKI------------GEV-HEGTATMDWMEQEQERGITITSAATTTYWNK 154 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~------------g~~-~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~ 154 (608)
+...|++++||+|||||||+.+|+|..|.+... |+- +.-+.++|..++|++||+|++.+...++.+.
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 345699999999999999999999999987651 110 1224689999999999999999999999999
Q ss_pred eeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCC-------CchhHHHHHHHHHhcCCCEE-EEEeCCCcCCCc---
Q 007325 155 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG-------VEPQSETVWRQADKYGVPRI-CFVNKMDRLGAN--- 223 (608)
Q Consensus 155 ~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g-------~~~~t~~~~~~~~~~~~p~i-vviNK~D~~~~~--- 223 (608)
+.++|+|||||.||..++..+...||.+|+||||..+ +..||++++-.++..++..+ +++||||....+
T Consensus 85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde~r 164 (428)
T COG5256 85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDEER 164 (428)
T ss_pred ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCHHH
Confidence 9999999999999999999999999999999999988 89999999999999999875 558999998754
Q ss_pred HHHHHHHHHH---hhCCccEEEeccCCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHH
Q 007325 224 FFRTRDMIVT---NLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIV 300 (608)
Q Consensus 224 ~~~~~~~i~~---~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~ 300 (608)
++++.+++.. .+|.++
T Consensus 165 f~ei~~~v~~l~k~~G~~~------------------------------------------------------------- 183 (428)
T COG5256 165 FEEIVSEVSKLLKMVGYNP------------------------------------------------------------- 183 (428)
T ss_pred HHHHHHHHHHHHHHcCCCc-------------------------------------------------------------
Confidence 2222222222 111110
Q ss_pred hhcHHHHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeeccCCCCChH------------HHHHHHHHhCCCCCCCCCC
Q 007325 301 ELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQ------------PLLDAVVDYLPSPLDLPAM 368 (608)
Q Consensus 301 ~~dd~l~e~~l~~~~~~~~el~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~------------~Lld~i~~~lP~p~~~~~~ 368 (608)
+-+|.+++||++|.|+. .||++|. .+..|..
T Consensus 184 --------------------------------~~v~FIPiSg~~G~Nl~~~s~~~pWY~GpTLleaLd-~~~~p~~---- 226 (428)
T COG5256 184 --------------------------------KDVPFIPISGFKGDNLTKKSENMPWYKGPTLLEALD-QLEPPER---- 226 (428)
T ss_pred --------------------------------cCCeEEecccccCCcccccCcCCcCccCChHHHHHh-ccCCCCC----
Confidence 11344555788777764 4677765 4444432
Q ss_pred CCCCCCCccchhccccCCCCCeEEEEEEeeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecC
Q 007325 369 KGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVK 448 (608)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~ 448 (608)
.-+.||++.|..++.-.+.|.+..+||-+|.|++||+|+..+.+....|+++..- .++++
T Consensus 227 ----------------~~d~Plr~pI~~v~~i~~~gtv~vGrVEsG~i~~g~~v~~~p~~~~~evksie~~----~~~~~ 286 (428)
T COG5256 227 ----------------PLDKPLRLPIQDVYSISGIGTVPVGRVESGVIKPGQKVTFMPAGVVGEVKSIEMH----HEEIS 286 (428)
T ss_pred ----------------CCCCCeEeEeeeEEEecCCceEEEEEEeeeeeccCCEEEEecCcceEEEeeeeec----ccccc
Confidence 1379999999999988888999999999999999999999998887788887633 57899
Q ss_pred eeecCCEEEE--cCC--CcccccceeccCCCCccc
Q 007325 449 VALAGDIIAL--AGL--KDTITGETLCDADHPILL 479 (608)
Q Consensus 449 ~a~aGdIv~i--~gl--~~~~~GdtL~~~~~~~~l 479 (608)
.+.|||.+.+ .|+ ++++.||+++++++++..
T Consensus 287 ~a~~GD~i~~~vrgv~~~dI~~Gdv~~~~~n~~t~ 321 (428)
T COG5256 287 QAEPGDNVGFNVRGVEKNDIRRGDVIGHSDNPPTV 321 (428)
T ss_pred cCCCCCeEEEEecCCchhccCCccEeccCCCCccc
Confidence 9999999987 454 459999999988776543
No 47
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=100.00 E-value=2.2e-31 Score=287.03 Aligned_cols=255 Identities=20% Similarity=0.285 Sum_probs=198.4
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEee---------------c-
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW---------------N- 153 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~---------------~- 153 (608)
..||+++||.|||||||+.+|. + ...|..++|++||+|++..+..+.+ .
T Consensus 34 ~~~ig~~GHVDhGKTtLv~aLt---g------------~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~ 98 (460)
T PTZ00327 34 TINIGTIGHVAHGKSTVVKALS---G------------VKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGS 98 (460)
T ss_pred cEEEEEEccCCCCHHHHHHHHh---C------------CCcccchhhHHhCCchhccccccccccCcccCCcccccccCC
Confidence 4689999999999999999995 2 2347788999999999988776521 0
Q ss_pred -----------------CeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCC-CchhHHHHHHHHHhcCCC-EEEEE
Q 007325 154 -----------------KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG-VEPQSETVWRQADKYGVP-RICFV 214 (608)
Q Consensus 154 -----------------~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g-~~~~t~~~~~~~~~~~~p-~ivvi 214 (608)
...++|||||||.+|..++..++..+|++++|||+.++ +++||.+++..+...+++ +|+|+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvl 178 (460)
T PTZ00327 99 SKPDNPPCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQ 178 (460)
T ss_pred CcccccccccccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEE
Confidence 24799999999999999999999999999999999986 799999999999888886 57899
Q ss_pred eCCCcCCCc-HHHHHHHHHHhhCCccEEEeccCCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHH
Q 007325 215 NKMDRLGAN-FFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRS 293 (608)
Q Consensus 215 NK~D~~~~~-~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~ 293 (608)
||+|+...+ ..+.++++++
T Consensus 179 NKiDlv~~~~~~~~~~ei~~------------------------------------------------------------ 198 (460)
T PTZ00327 179 NKIDLVKEAQAQDQYEEIRN------------------------------------------------------------ 198 (460)
T ss_pred ecccccCHHHHHHHHHHHHH------------------------------------------------------------
Confidence 999986421 1111121111
Q ss_pred HHHHHHHhhcHHHHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeeccCCCCChHHHHHHHHHhCCCCCCCCCCCCCCC
Q 007325 294 QMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDP 373 (608)
Q Consensus 294 ~l~e~~~~~dd~l~e~~l~~~~~~~~el~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~ 373 (608)
.++.. .....|++.+||++|.|++.|+++|.+.+|.|..
T Consensus 199 ------------------------------~l~~~--~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~~r--------- 237 (460)
T PTZ00327 199 ------------------------------FVKGT--IADNAPIIPISAQLKYNIDVVLEYICTQIPIPKR--------- 237 (460)
T ss_pred ------------------------------HHHhh--ccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCCCC---------
Confidence 11100 0134689999999999999999999999998743
Q ss_pred CCccchhccccCCCCCeEEEEEEeeec--------CCCceEEEEEEecceeCCCCEEEeCCCC-------------ceee
Q 007325 374 ENPEATLERAASDDEPFAGLAFKIMSD--------PFVGSLTFVRVYAGTLSAGSYVLNANKG-------------KKER 432 (608)
Q Consensus 374 ~~~~~~~~~~~~~~~p~~~~V~K~~~d--------~~~G~la~~RV~sG~l~~g~~v~~~~~~-------------~~~k 432 (608)
+.+.|+.++|...+.. .++|.+..|+|.+|++++||.|...+.+ ...+
T Consensus 238 -----------~~~~p~r~~Idr~F~V~~~g~~~~~~~GtVv~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~ 306 (460)
T PTZ00327 238 -----------DLTSPPRMIVIRSFDVNKPGEDIENLKGGVAGGSILQGVLKVGDEIEIRPGIISKDSGGEFTCRPIRTR 306 (460)
T ss_pred -----------CCCCCcEEEEEEEEeecccCCcccCCceEEEEEEEeeceEecCCEEEEccCcccccccCccccccceEE
Confidence 1357888888876643 3479999999999999999999988753 2346
Q ss_pred cceEEEeecCceeecCeeecCCEEEEc-----CC--CcccccceeccCCC
Q 007325 433 IGRLLEMHANSREDVKVALAGDIIALA-----GL--KDTITGETLCDADH 475 (608)
Q Consensus 433 i~~i~~~~g~~~~~v~~a~aGdIv~i~-----gl--~~~~~GdtL~~~~~ 475 (608)
|.+|.. ...++++|.|||.++|. ++ +++..|++|+.++.
T Consensus 307 VksI~~----~~~~v~~a~aG~~vai~l~ld~~v~~~dv~rG~Vl~~~~~ 352 (460)
T PTZ00327 307 IVSLFA----ENNELQYAVPGGLIGVGTTIDPTLTRADRLVGQVLGYPGK 352 (460)
T ss_pred EEEEEE----CCeECCEEcCCCEEEEEeccCCCcchhhcccccEEEcCCC
Confidence 777753 35789999999999994 33 23668999998653
No 48
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-32 Score=272.51 Aligned_cols=271 Identities=30% Similarity=0.414 Sum_probs=213.1
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccce-eeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCc
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIG-EVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g-~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 168 (608)
.-||+-|||++||||||+.++.... ...| .......-.|..++|+.|||||+.....++...+.+--+|||||.||
T Consensus 54 HvNVGTIGHVDHGKTTLTaAITkil---a~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADY 130 (449)
T KOG0460|consen 54 HVNVGTIGHVDHGKTTLTAAITKIL---AEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADY 130 (449)
T ss_pred cccccccccccCCchhHHHHHHHHH---HhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHH
Confidence 4699999999999999999995221 1111 11111234577899999999999999999888999999999999999
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEE-EEeCCCcCCC-cHHHHHHHHHHhhCCccEEEeccC
Q 007325 169 TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRIC-FVNKMDRLGA-NFFRTRDMIVTNLGAKPLVVQLPV 246 (608)
Q Consensus 169 ~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~iv-viNK~D~~~~-~~~~~~~~i~~~l~~~~~~~~~pi 246 (608)
.+.++.+....|++|+||.|++|.++||++++-.+++-+++.|+ |+||.|..+. +.-
T Consensus 131 IKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~l--------------------- 189 (449)
T KOG0460|consen 131 IKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPEML--------------------- 189 (449)
T ss_pred HHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCHHHH---------------------
Confidence 99999999999999999999999999999999999999999765 5899998742 211
Q ss_pred CCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHHhcCCCCCHHHHHHHHH
Q 007325 247 GAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIR 326 (608)
Q Consensus 247 ~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l~~~~~~~~el~~~l~ 326 (608)
|.+ +-|+++.|.
T Consensus 190 --------------------------------------------------eLV------------------EmE~RElLs 201 (449)
T KOG0460|consen 190 --------------------------------------------------ELV------------------EMEIRELLS 201 (449)
T ss_pred --------------------------------------------------HHH------------------HHHHHHHHH
Confidence 111 013333444
Q ss_pred hhcccCcceeeeeeccCCC-------CC---hHHHHHHHHHhCCCCCCCCCCCCCCCCCccchhccccCCCCCeEEEEEE
Q 007325 327 KGTIAGSFVPVLCGSAFKN-------KG---VQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFK 396 (608)
Q Consensus 327 ~~~~~~~~~Pv~~~SA~~~-------~G---i~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K 396 (608)
..--.+.-+||++|||+-- .| |..|||++.+|+|.|.. +-+.||.+.|-.
T Consensus 202 e~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R--------------------~~~~pFl~pie~ 261 (449)
T KOG0460|consen 202 EFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPER--------------------DLDKPFLLPIED 261 (449)
T ss_pred HcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCccc--------------------ccCCCceeehhh
Confidence 4444556689999998742 23 67899999999999965 247899999999
Q ss_pred eeecCCCceEEEEEEecceeCCCCEEEeCCCCc--eeecceEEEeecCceeecCeeecCCEEEE--cCCC--ccccccee
Q 007325 397 IMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGK--KERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DTITGETL 470 (608)
Q Consensus 397 ~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~--~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~--~~~~GdtL 470 (608)
++..+++|.++.+|+-.|+|++|+++-....++ +..|..|-.+ +..+++|.|||-+++ .|++ +++.|.++
T Consensus 262 vfsI~GRGTVvtGrlERG~lKkG~e~eivG~~~~lkttvtgiemF----~K~ld~a~AGDn~G~LlRGik~~dvkRGmvl 337 (449)
T KOG0460|consen 262 VFSIPGRGTVVTGRLERGVLKKGDEVEIVGHNKTLKTTVTGIEMF----RKSLDEAQAGDNLGALLRGIKREDVKRGMVL 337 (449)
T ss_pred eeeecCCceEEEEEEeecccccCCEEEEeccCcceeeEeehHHHH----HHHHHhcccccceehhhhcCCHHHHhcccEE
Confidence 999999999999999999999999998765443 3345554322 467899999999987 6664 58899999
Q ss_pred ccCCCC
Q 007325 471 CDADHP 476 (608)
Q Consensus 471 ~~~~~~ 476 (608)
+.++..
T Consensus 338 ~~pGsv 343 (449)
T KOG0460|consen 338 AKPGSV 343 (449)
T ss_pred ecCCcc
Confidence 987654
No 49
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.7e-32 Score=261.02 Aligned_cols=274 Identities=28% Similarity=0.407 Sum_probs=210.2
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 167 (608)
+..-||+.|||.|||||||..++........ +.........|..|+|++|||||+.+...++..+..+-.+|+|||.|
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~--~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaD 87 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKG--GAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD 87 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhc--cccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHH
Confidence 3457999999999999999999963221110 11111113357789999999999999999999999999999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEE-EEeCCCcCCCcHHHHHHHHHHhhCCccEEEeccC
Q 007325 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRIC-FVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPV 246 (608)
Q Consensus 168 f~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~iv-viNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~pi 246 (608)
|.+.++.+...+|++|+||.|.+|.++||++++..+++.++|.|+ |+||+|+.+..
T Consensus 88 YvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~----------------------- 144 (394)
T COG0050 88 YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDE----------------------- 144 (394)
T ss_pred HHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcH-----------------------
Confidence 999999999999999999999999999999999999999998765 58999987521
Q ss_pred CCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHHhcCCCCCHHHHHHHHH
Q 007325 247 GAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIR 326 (608)
Q Consensus 247 ~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l~~~~~~~~el~~~l~ 326 (608)
+|+|.+. .|+++.|.
T Consensus 145 -----------------------------------------------ellelVe------------------mEvreLLs 159 (394)
T COG0050 145 -----------------------------------------------ELLELVE------------------MEVRELLS 159 (394)
T ss_pred -----------------------------------------------HHHHHHH------------------HHHHHHHH
Confidence 1222222 12233333
Q ss_pred hhcccCcceeeeeeccCCCC--------ChHHHHHHHHHhCCCCCCCCCCCCCCCCCccchhccccCCCCCeEEEEEEee
Q 007325 327 KGTIAGSFVPVLCGSAFKNK--------GVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIM 398 (608)
Q Consensus 327 ~~~~~~~~~Pv~~~SA~~~~--------Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~ 398 (608)
..--.+.-.||..+||+.-. -|.+|++++.+|+|.|.. +.+.||.+.|-.++
T Consensus 160 ~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per--------------------~~dkPflmpvEdvf 219 (394)
T COG0050 160 EYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPER--------------------DIDKPFLMPVEDVF 219 (394)
T ss_pred HcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCC--------------------cccccccccceeeE
Confidence 33334455789999988642 268999999999999965 24799999999999
Q ss_pred ecCCCceEEEEEEecceeCCCCEEEeCCCC--ceeecceEEEeecCceeecCeeecCCEEEE--cCC--Ccccccceecc
Q 007325 399 SDPFVGSLTFVRVYAGTLSAGSYVLNANKG--KKERIGRLLEMHANSREDVKVALAGDIIAL--AGL--KDTITGETLCD 472 (608)
Q Consensus 399 ~d~~~G~la~~RV~sG~l~~g~~v~~~~~~--~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl--~~~~~GdtL~~ 472 (608)
...++|.++++||-.|+|+.|+.+....-. ++..+..+- | -++..++..|||.+++ .|. +++..|..|+.
T Consensus 220 sIsgrgtvvtGrVeRG~lkvg~eveivG~~~~~kttvtgve-m---frk~ld~~~AGdnvg~llRg~~r~~veRGqvLak 295 (394)
T COG0050 220 SISGRGTVVTGRVERGILKVGEEVEIVGIKETQKTTVTGVE-M---FRKLLDEGQAGDNVGVLLRGVKREDVERGQVLAK 295 (394)
T ss_pred EEcCceeEEEEEEeeeeeccCCEEEEecccccceeEEEhHH-H---HHHHHhccccCCCcceEEEeccccceecceEeec
Confidence 999999999999999999999999865433 222233221 1 1456789999999887 444 45888999987
Q ss_pred CCC
Q 007325 473 ADH 475 (608)
Q Consensus 473 ~~~ 475 (608)
++.
T Consensus 296 pgs 298 (394)
T COG0050 296 PGS 298 (394)
T ss_pred CCc
Confidence 754
No 50
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.98 E-value=4.6e-31 Score=294.97 Aligned_cols=251 Identities=21% Similarity=0.254 Sum_probs=203.2
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEee-cCeeEEEEeCCCCCCchH
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPGHVDFTL 170 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPG~~df~~ 170 (608)
.|+++||+|||||||+++|. | ..+|..++|++||+|++.....+.. ++..++|||||||.+|..
T Consensus 2 ii~~~GhvdhGKTtLi~aLt---g------------~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~ 66 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAIT---G------------VNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLS 66 (614)
T ss_pred EEEEECCCCCCHHHHHHHHh---C------------CCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHH
Confidence 58999999999999999994 2 1257778899999999998877765 467899999999999999
Q ss_pred HHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCE-EEEEeCCCcCCCc-HHHHHHHHHHhhCCccEEEeccCCC
Q 007325 171 EVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLGAN-FFRTRDMIVTNLGAKPLVVQLPVGA 248 (608)
Q Consensus 171 ~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~-ivviNK~D~~~~~-~~~~~~~i~~~l~~~~~~~~~pi~~ 248 (608)
.+..++..+|++++|||+.+|+.+|+++++..+...++|. ++|+||+|+...+ +..+.+++++.
T Consensus 67 ~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~-------------- 132 (614)
T PRK10512 67 NMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAV-------------- 132 (614)
T ss_pred HHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHH--------------
Confidence 9999999999999999999999999999999999899996 6899999986421 11112222111
Q ss_pred CCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHHhcCCCCCHHHHHHHHHhh
Q 007325 249 EDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKG 328 (608)
Q Consensus 249 ~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l~~~~~~~~el~~~l~~~ 328 (608)
+...
T Consensus 133 ----------------------------------------------------------------------------l~~~ 136 (614)
T PRK10512 133 ----------------------------------------------------------------------------LREY 136 (614)
T ss_pred ----------------------------------------------------------------------------HHhc
Confidence 1100
Q ss_pred cccCcceeeeeeccCCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccchhccccCCCCCeEEEEEEeeecCCCceEEE
Q 007325 329 TIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTF 408 (608)
Q Consensus 329 ~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~~G~la~ 408 (608)
.....|++++||++|.|++.|++.|.++. .|.. +.++||.+.|..++..++.|.++.
T Consensus 137 --~~~~~~ii~VSA~tG~gI~~L~~~L~~~~-~~~~--------------------~~~~~~rl~Id~vf~v~G~GtVvt 193 (614)
T PRK10512 137 --GFAEAKLFVTAATEGRGIDALREHLLQLP-EREH--------------------AAQHRFRLAIDRAFTVKGAGLVVT 193 (614)
T ss_pred --CCCCCcEEEEeCCCCCCCHHHHHHHHHhh-cccc--------------------CcCCCceEEEEEEeccCCCeEEEE
Confidence 00135899999999999999999998764 3322 135899999999999999999999
Q ss_pred EEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCeeecCCEEEE--cC-CC--cccccceeccCC
Q 007325 409 VRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AG-LK--DTITGETLCDAD 474 (608)
Q Consensus 409 ~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~g-l~--~~~~GdtL~~~~ 474 (608)
|+|.+|+++.||+|.+.+.+...+|.+|... ..++++|.|||.+++ .| ++ ++..||+|+++.
T Consensus 194 Gtv~sG~l~~Gd~v~i~p~~~~~~VrsIq~~----~~~v~~a~aG~rval~l~g~~~~~~i~rGdvl~~~~ 260 (614)
T PRK10512 194 GTALSGEVKVGDTLWLTGVNKPMRVRGLHAQ----NQPTEQAQAGQRIALNIAGDAEKEQINRGDWLLADA 260 (614)
T ss_pred EEEecceEecCCEEEEcCCCCcEEEEEEecC----CcCCCEEeCCCeEEEEecCCCChhhCCCcCEEeCCC
Confidence 9999999999999999888877888887532 368999999999988 44 43 488999999763
No 51
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.97 E-value=1.5e-30 Score=294.81 Aligned_cols=275 Identities=25% Similarity=0.249 Sum_probs=206.5
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCccc--ce-----eeccCC--------ccccchhhhhhcceeEeecEEEEee
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYK--IG-----EVHEGT--------ATMDWMEQEQERGITITSAATTTYW 152 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~--~g-----~~~~g~--------~~~d~~~~e~~~giTi~~~~~~~~~ 152 (608)
+...+|+|+||+|||||||+++|++..|.+.. .+ ....|+ ..+|..++|++||+|++.....+.+
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 33457999999999999999999999987762 11 112333 5789999999999999999999999
Q ss_pred cCeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCC-EEEEEeCCCcCCCcHHHHHHHH
Q 007325 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGANFFRTRDMI 231 (608)
Q Consensus 153 ~~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p-~ivviNK~D~~~~~~~~~~~~i 231 (608)
++.+++|||||||.+|...+..++..+|++++|||+.+|+..++++++..+...+++ +++|+||+|+...+.+ .++++
T Consensus 102 ~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~~-~~~~i 180 (632)
T PRK05506 102 PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQE-VFDEI 180 (632)
T ss_pred CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccchhH-HHHHH
Confidence 999999999999999999999999999999999999999999999999999888864 6778999998642211 11111
Q ss_pred HHhhCCccEEEeccCCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHHh
Q 007325 232 VTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYL 311 (608)
Q Consensus 232 ~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l 311 (608)
.+
T Consensus 181 ~~------------------------------------------------------------------------------ 182 (632)
T PRK05506 181 VA------------------------------------------------------------------------------ 182 (632)
T ss_pred HH------------------------------------------------------------------------------
Confidence 10
Q ss_pred cCCCCCHHHHHHHHHhhcccCcceeeeeeccCCCCChH------------HHHHHHHHhCCCCCCCCCCCCCCCCCccch
Q 007325 312 EGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQ------------PLLDAVVDYLPSPLDLPAMKGTDPENPEAT 379 (608)
Q Consensus 312 ~~~~~~~~el~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~------------~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~ 379 (608)
++.+.+.+.. ...+|++++||++|.|+. .|++.|.. +|.|..
T Consensus 183 --------~i~~~~~~~~--~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~l~~-~~~~~~--------------- 236 (632)
T PRK05506 183 --------DYRAFAAKLG--LHDVTFIPISALKGDNVVTRSARMPWYEGPSLLEHLET-VEIASD--------------- 236 (632)
T ss_pred --------HHHHHHHHcC--CCCccEEEEecccCCCccccccCCCcccHhHHHHHHhc-CCCCCC---------------
Confidence 0101111000 012467888999999987 47777754 343322
Q ss_pred hccccCCCCCeEEEEEEeeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCeeecCCEEEEc
Q 007325 380 LERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALA 459 (608)
Q Consensus 380 ~~~~~~~~~p~~~~V~K~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~ 459 (608)
..+.|+.+.|..++...+.+.-..|+|.+|+|++||+|.+.+.+...+|++|... ..++++|.|||.|+|.
T Consensus 237 -----~~~~p~r~~i~~v~~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~----~~~~~~a~aG~~v~i~ 307 (632)
T PRK05506 237 -----RNLKDFRFPVQYVNRPNLDFRGFAGTVASGVVRPGDEVVVLPSGKTSRVKRIVTP----DGDLDEAFAGQAVTLT 307 (632)
T ss_pred -----cCCCCceeeEEEEEecCCCceEEEEEEecceeecCCEEEEcCCCceEEEEEEEEC----CceeCEEcCCCeEEEE
Confidence 1257888877766543221222569999999999999999988888899998633 3568999999999994
Q ss_pred C--CCcccccceeccCCCC
Q 007325 460 G--LKDTITGETLCDADHP 476 (608)
Q Consensus 460 g--l~~~~~GdtL~~~~~~ 476 (608)
- -.++..|++||+++.+
T Consensus 308 l~~~~~i~rG~vL~~~~~~ 326 (632)
T PRK05506 308 LADEIDISRGDMLARADNR 326 (632)
T ss_pred ecCccccCCccEEecCCCC
Confidence 2 2347899999987653
No 52
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.97 E-value=2.6e-30 Score=277.81 Aligned_cols=256 Identities=22% Similarity=0.340 Sum_probs=198.6
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeec----------------
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN---------------- 153 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~---------------- 153 (608)
..||+++||.|||||||+++|. + .++|..++|++||+|++.+...+.|.
T Consensus 9 ~~ni~v~Gh~d~GKSTL~~~L~---~------------~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (411)
T PRK04000 9 EVNIGMVGHVDHGKTTLVQALT---G------------VWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPK 73 (411)
T ss_pred cEEEEEEccCCCCHHHHHHHhh---C------------eecccCHhHHhcCcEEEecccccccccccccCcccccccccc
Confidence 4799999999999999999993 2 24788999999999999876554442
Q ss_pred ----------CeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCC-chhHHHHHHHHHhcCC-CEEEEEeCCCcCC
Q 007325 154 ----------KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-EPQSETVWRQADKYGV-PRICFVNKMDRLG 221 (608)
Q Consensus 154 ----------~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~-~~~t~~~~~~~~~~~~-p~ivviNK~D~~~ 221 (608)
.+.++|||||||.+|...+..++..+|++++|+|+.++. ..++.+++..+...++ |+++|+||+|+..
T Consensus 74 ~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~ 153 (411)
T PRK04000 74 CPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVS 153 (411)
T ss_pred ccccccccccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeecccc
Confidence 268999999999999999999999999999999999988 8899999988888886 5788999999865
Q ss_pred CcH-HHHHHHHHHhhCCccEEEeccCCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHH
Q 007325 222 ANF-FRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIV 300 (608)
Q Consensus 222 ~~~-~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~ 300 (608)
.+. ....+++++
T Consensus 154 ~~~~~~~~~~i~~------------------------------------------------------------------- 166 (411)
T PRK04000 154 KERALENYEQIKE------------------------------------------------------------------- 166 (411)
T ss_pred chhHHHHHHHHHH-------------------------------------------------------------------
Confidence 321 001111111
Q ss_pred hhcHHHHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeeccCCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccchh
Q 007325 301 ELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATL 380 (608)
Q Consensus 301 ~~dd~l~e~~l~~~~~~~~el~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~ 380 (608)
++ ... .....|++.+||++|.|++.|++.|.+.+|.|..
T Consensus 167 ---------~l--------------~~~--~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~~~~---------------- 205 (411)
T PRK04000 167 ---------FV--------------KGT--VAENAPIIPVSALHKVNIDALIEAIEEEIPTPER---------------- 205 (411)
T ss_pred ---------Hh--------------ccc--cCCCCeEEEEECCCCcCHHHHHHHHHHhCCCCCC----------------
Confidence 00 000 0123588999999999999999999999987643
Q ss_pred ccccCCCCCeEEEEEEeee--------cCCCceEEEEEEecceeCCCCEEEeCCCCc------------eeecceEEEee
Q 007325 381 ERAASDDEPFAGLAFKIMS--------DPFVGSLTFVRVYAGTLSAGSYVLNANKGK------------KERIGRLLEMH 440 (608)
Q Consensus 381 ~~~~~~~~p~~~~V~K~~~--------d~~~G~la~~RV~sG~l~~g~~v~~~~~~~------------~~ki~~i~~~~ 440 (608)
+.+.|+.+.|..++. ++++|.+..|||.+|+|++||.|...+.+. ..+|++|...
T Consensus 206 ----~~~~~~r~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~l~~gd~v~i~P~~~~~~~~~~~~~~~~~~VksI~~~- 280 (411)
T PRK04000 206 ----DLDKPPRMYVARSFDVNKPGTPPEKLKGGVIGGSLIQGVLKVGDEIEIRPGIKVEEGGKTKWEPITTKIVSLRAG- 280 (411)
T ss_pred ----CCCCCceEEEEeeeeecCCCccccCCcceEEEEEEEeCEEecCCEEEEcCCcceecccccccccceEEEeEEEEC-
Confidence 135789999988774 345678999999999999999999987642 3467777532
Q ss_pred cCceeecCeeecCCEEEEc-----CC--CcccccceeccCCCC
Q 007325 441 ANSREDVKVALAGDIIALA-----GL--KDTITGETLCDADHP 476 (608)
Q Consensus 441 g~~~~~v~~a~aGdIv~i~-----gl--~~~~~GdtL~~~~~~ 476 (608)
..++++|.|||.++|. ++ +++..|+.||+++.+
T Consensus 281 ---~~~~~~a~~G~~v~i~l~~~~~i~~~~i~~G~vl~~~~~~ 320 (411)
T PRK04000 281 ---GEKVEEARPGGLVGVGTKLDPSLTKADALAGSVAGKPGTL 320 (411)
T ss_pred ---CEECCEEcCCCEEEEEeccCCCCCHHHccCccEEEcCCCC
Confidence 4789999999999884 33 236789999987544
No 53
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.97 E-value=9.9e-32 Score=259.56 Aligned_cols=145 Identities=37% Similarity=0.491 Sum_probs=127.7
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEe--ecCeeEEEEeCCCC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY--WNKHRINIIDTPGH 165 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~--~~~~~i~liDTPG~ 165 (608)
++++||+++||.|||||||+++|++..+.....+....+.+..|..+.|+++|+|+......+. +.++.+++||||||
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~ 80 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGH 80 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSS
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccc
Confidence 4689999999999999999999999988776655443334678999999999999999999999 99999999999999
Q ss_pred CCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCCcHHHHHHHHH
Q 007325 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIV 232 (608)
Q Consensus 166 ~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~ 232 (608)
.+|..++.++++.+|++|+|||+.+|++.++.++++.+...++|+++|+||||+...++.+.+++++
T Consensus 81 ~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~~~~~~~~~~~~ 147 (188)
T PF00009_consen 81 EDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIEKELEEIIEEIK 147 (188)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSHHHHHHHHHHHH
T ss_pred cceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchhhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998554444444443
No 54
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.97 E-value=9.4e-30 Score=273.66 Aligned_cols=255 Identities=22% Similarity=0.335 Sum_probs=196.8
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEee-----------------
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW----------------- 152 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~----------------- 152 (608)
..||+++||+|||||||+++|. + ..+|..++|++||+|+......+.+
T Consensus 4 ~~~i~iiG~~~~GKSTL~~~Lt---~------------~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (406)
T TIGR03680 4 EVNIGMVGHVDHGKTTLTKALT---G------------VWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPV 68 (406)
T ss_pred eEEEEEEccCCCCHHHHHHHHh---C------------eecccCHhHHHcCceeEecccccccccccccCcccccccccc
Confidence 4699999999999999999993 2 2368889999999999988655432
Q ss_pred ---------cCeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCC-chhHHHHHHHHHhcCCC-EEEEEeCCCcCC
Q 007325 153 ---------NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-EPQSETVWRQADKYGVP-RICFVNKMDRLG 221 (608)
Q Consensus 153 ---------~~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~-~~~t~~~~~~~~~~~~p-~ivviNK~D~~~ 221 (608)
.+..+++||||||.+|...+..++..+|++++|||++++. ..++.+++..+...+++ +++|+||+|+..
T Consensus 69 ~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~ 148 (406)
T TIGR03680 69 CPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVS 148 (406)
T ss_pred ccccccccccccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCC
Confidence 1367999999999999999999999999999999999998 88999999988888765 788899999865
Q ss_pred CcH-HHHHHHHHHhhCCccEEEeccCCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHH
Q 007325 222 ANF-FRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIV 300 (608)
Q Consensus 222 ~~~-~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~ 300 (608)
.+. ....+++.+
T Consensus 149 ~~~~~~~~~~i~~------------------------------------------------------------------- 161 (406)
T TIGR03680 149 KEKALENYEEIKE------------------------------------------------------------------- 161 (406)
T ss_pred HHHHHHHHHHHHh-------------------------------------------------------------------
Confidence 321 011111111
Q ss_pred hhcHHHHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeeccCCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccchh
Q 007325 301 ELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATL 380 (608)
Q Consensus 301 ~~dd~l~e~~l~~~~~~~~el~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~ 380 (608)
+ +.... ...+|++++||++|.|++.|+++|...+|.|..
T Consensus 162 ---------~--------------l~~~~--~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~~~~---------------- 200 (406)
T TIGR03680 162 ---------F--------------VKGTV--AENAPIIPVSALHNANIDALLEAIEKFIPTPER---------------- 200 (406)
T ss_pred ---------h--------------hhhcc--cCCCeEEEEECCCCCChHHHHHHHHHhCCCCCC----------------
Confidence 0 00000 112589999999999999999999999987643
Q ss_pred ccccCCCCCeEEEEEEeeec--------CCCceEEEEEEecceeCCCCEEEeCCCCc------------eeecceEEEee
Q 007325 381 ERAASDDEPFAGLAFKIMSD--------PFVGSLTFVRVYAGTLSAGSYVLNANKGK------------KERIGRLLEMH 440 (608)
Q Consensus 381 ~~~~~~~~p~~~~V~K~~~d--------~~~G~la~~RV~sG~l~~g~~v~~~~~~~------------~~ki~~i~~~~ 440 (608)
+.+.|+.+.|..++.. +++|.+..|||.+|+|++||.|...+.+. ..+|.+|...
T Consensus 201 ----~~~~~~~~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~i~~gd~v~i~P~~~~~~~g~~~~~~~~~~V~sI~~~- 275 (406)
T TIGR03680 201 ----DLDKPPLMYVARSFDVNKPGTPPEKLKGGVIGGSLIQGKLKVGDEIEIRPGIKVEKGGKTKWEPIYTEITSLRAG- 275 (406)
T ss_pred ----CCCCCcEEEEEEEEeecCCCccccCCceeEEEEEEEeCEEeCCCEEEEccCccccccccccccccceEEeEEEEC-
Confidence 1357899999987743 34678999999999999999999886542 2467776532
Q ss_pred cCceeecCeeecCCEEEEc-----CC--CcccccceeccCCC
Q 007325 441 ANSREDVKVALAGDIIALA-----GL--KDTITGETLCDADH 475 (608)
Q Consensus 441 g~~~~~v~~a~aGdIv~i~-----gl--~~~~~GdtL~~~~~ 475 (608)
..++++|.|||.++|. ++ +++..|+.|+.++.
T Consensus 276 ---~~~~~~a~~G~~v~i~l~~~~~i~~~dv~~G~vl~~~~~ 314 (406)
T TIGR03680 276 ---GYKVEEARPGGLVGVGTKLDPALTKADALAGQVVGKPGT 314 (406)
T ss_pred ---CEECCEEcCCCEEEEeeccCCCCCHHHcccccEEEcCCC
Confidence 4789999999999983 33 23678999998753
No 55
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.97 E-value=1.9e-29 Score=281.40 Aligned_cols=253 Identities=23% Similarity=0.281 Sum_probs=203.6
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchHH
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (608)
+|+++||+|||||||+++|. +. .+|..+.|.++|+|++.....+.+++..+++||||||.+|...
T Consensus 2 ~I~iiG~~d~GKTTLi~aLt---g~------------~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~ 66 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALT---GI------------AADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISN 66 (581)
T ss_pred EEEEECCCCCCHHHHHHHHh---Cc------------cCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHH
Confidence 79999999999999999995 21 1466678899999999999899998899999999999999999
Q ss_pred HHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCC-EEEEEeCCCcCCCcH-HHHHHHHHHhhCCccEEEeccCCCC
Q 007325 172 VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGANF-FRTRDMIVTNLGAKPLVVQLPVGAE 249 (608)
Q Consensus 172 ~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p-~ivviNK~D~~~~~~-~~~~~~i~~~l~~~~~~~~~pi~~~ 249 (608)
+..++..+|++++|||+++|+..++.+++..+...++| +++|+||+|+.+.+. +...+++++
T Consensus 67 ~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~---------------- 130 (581)
T TIGR00475 67 AIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQ---------------- 130 (581)
T ss_pred HHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHH----------------
Confidence 99999999999999999999999999999999989999 999999999865321 111111111
Q ss_pred CCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHHhcCCCCCHHHHHHHHHhhc
Q 007325 250 DNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGT 329 (608)
Q Consensus 250 ~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l~~~~~~~~el~~~l~~~~ 329 (608)
++..+ .
T Consensus 131 --------------------------------------------------------~l~~~------------------~ 136 (581)
T TIGR00475 131 --------------------------------------------------------ILNSY------------------I 136 (581)
T ss_pred --------------------------------------------------------HHHHh------------------C
Confidence 00100 0
Q ss_pred ccCcceeeeeeccCCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccchhccccCCCCCeEEEEEEeeecCCCceEEEE
Q 007325 330 IAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFV 409 (608)
Q Consensus 330 ~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~~G~la~~ 409 (608)
.....|++.+||++|.|+++|++.|.++++..... ..++||.+.|..++..++.|.++.|
T Consensus 137 -~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~~~~~-------------------~~~~p~r~~Id~~f~v~G~GtVv~G 196 (581)
T TIGR00475 137 -FLKNAKIFKTSAKTGQGIGELKKELKNLLESLDIK-------------------RIQKPLRMAIDRAFKVKGAGTVVTG 196 (581)
T ss_pred -CCCCCcEEEEeCCCCCCchhHHHHHHHHHHhCCCc-------------------CcCCCcEEEEEEEEecCCcEEEEEE
Confidence 00125789999999999999999998776543210 1368999999999999999999999
Q ss_pred EEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCeeecCCEEEE--cCCC--cccccceeccC
Q 007325 410 RVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DTITGETLCDA 473 (608)
Q Consensus 410 RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~--~~~~GdtL~~~ 473 (608)
+|.+|+++.||+|...+.+...+|.+|... ..++++|.|||.|+| .|++ ++..|..++++
T Consensus 197 ~v~~G~i~~Gd~l~i~P~~~~~~Vr~iq~~----~~~v~~a~aG~rval~L~~i~~~~i~rG~~~~~~ 260 (581)
T TIGR00475 197 TAFSGEVKVGDNLRLLPINHEVRVKAIQAQ----NQDVEIAYAGQRIALNLMDVEPESLKRGLLILTP 260 (581)
T ss_pred EEecceEecCCEEEECCCCceEEEeEEEEC----CccCCEEECCCEEEEEeCCCCHHHcCCceEEcCC
Confidence 999999999999999998888899998633 367999999999998 4443 36778666543
No 56
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=2.2e-28 Score=258.46 Aligned_cols=301 Identities=25% Similarity=0.322 Sum_probs=229.2
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeec---CeeEEEEeCCCC
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN---KHRINIIDTPGH 165 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~---~~~i~liDTPG~ 165 (608)
+-|.|+++||.+||||||++.+-..+-.... .-|||.......+.++ ...+.|||||||
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~E------------------aGGITQhIGA~~v~~~~~~~~~itFiDTPGH 65 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGE------------------AGGITQHIGAYQVPLDVIKIPGITFIDTPGH 65 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCcccccc------------------CCceeeEeeeEEEEeccCCCceEEEEcCCcH
Confidence 4579999999999999999999522111111 2468999999999884 479999999999
Q ss_pred CCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCCcHHHHHHHHHHhhCCccEEEecc
Q 007325 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLP 245 (608)
Q Consensus 166 ~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~p 245 (608)
.-|.....++...+|.+|+|||+.+|+++||.+.++.++..++|+++++||+|++.++++++..++++. |..
T Consensus 66 eAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~-gl~------- 137 (509)
T COG0532 66 EAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEY-GLV------- 137 (509)
T ss_pred HHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHc-CCC-------
Confidence 999999999999999999999999999999999999999999999999999999999988887777653 110
Q ss_pred CCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHHhcCCCCCHHHHHHHH
Q 007325 246 VGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLI 325 (608)
Q Consensus 246 i~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l~~~~~~~~el~~~l 325 (608)
.++
T Consensus 138 ------------------------------------------------------------------------~E~----- 140 (509)
T COG0532 138 ------------------------------------------------------------------------PEE----- 140 (509)
T ss_pred ------------------------------------------------------------------------Hhh-----
Confidence 011
Q ss_pred HhhcccCcceeeeeeccCCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccchhccccCCCCCeEEEEEEeeecCCCce
Q 007325 326 RKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGS 405 (608)
Q Consensus 326 ~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~~G~ 405 (608)
++..+.++.+||++|.|+++||++|.-.. ...+.+.+++.+..+.|.....+++.|.
T Consensus 141 -----~gg~v~~VpvSA~tg~Gi~eLL~~ill~a------------------ev~elka~~~~~a~gtviE~~~dkG~G~ 197 (509)
T COG0532 141 -----WGGDVIFVPVSAKTGEGIDELLELILLLA------------------EVLELKANPEGPARGTVIEVKLDKGLGP 197 (509)
T ss_pred -----cCCceEEEEeeccCCCCHHHHHHHHHHHH------------------HHHhhhcCCCCcceEEEEEEEeccCCCc
Confidence 12225678889999999999999997432 1123556788999999999999999999
Q ss_pred EEEEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCeeecCCEEEEcCCCcc-cccceeccCCC---------
Q 007325 406 LTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDT-ITGETLCDADH--------- 475 (608)
Q Consensus 406 la~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~-~~GdtL~~~~~--------- 475 (608)
++..-|+.|||+.||.|...... +.+..|......+++.+.++--+.+.|++++ ..||....-++
T Consensus 198 vatviv~~GtL~~GD~iv~g~~~-----g~I~t~v~~~~~~i~~a~ps~~v~i~g~~evp~Ag~~~~v~~~e~~A~~~~~ 272 (509)
T COG0532 198 VATVIVQDGTLKKGDIIVAGGEY-----GRVRTMVDDLGKPIKEAGPSKPVEILGLSEVPAAGDVFIVVKDEKKARAIAE 272 (509)
T ss_pred eEEEEEecCeEecCCEEEEccCC-----CceEEeehhcCCCccccCCCCCeEEeccccccccCceEEecCChHHHhhhhh
Confidence 99999999999999999876532 2334444444566777777766666666663 23554421110
Q ss_pred --------C-----------cccCCCCCCC--ceEEEEEEeCCCCCHHHHHHHHHHHHHhCCeeEE
Q 007325 476 --------P-----------ILLERMDFPD--PVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHF 520 (608)
Q Consensus 476 --------~-----------~~l~~~~~~~--Pv~~~aiep~~~~d~~kL~~aL~~L~~eDPsl~v 520 (608)
. ..+..+.... ..+.+-|.+...+..+.|..+|+++.-..-.+++
T Consensus 273 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~viiKaDt~GSlEAL~~~L~~~~~~~v~~~i 338 (509)
T COG0532 273 LRVVLLREAELASKKKGELEELIAEIKIRGELKELNVILKADTQGSLEALKGSLKKLGVDEVKVRI 338 (509)
T ss_pred HhhhhhhhhhhhhHHHHHHHHHHHhhhccCCcceecEEEEEcccchHHHHHHHHHhcCCCceEEEE
Confidence 0 0112222223 3499999999999999999999999876654444
No 57
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=2.4e-28 Score=254.83 Aligned_cols=302 Identities=24% Similarity=0.329 Sum_probs=239.4
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEee-cCeeEEEEeCCCCC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPGHV 166 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPG~~ 166 (608)
.+-|.|.|+||+|||||||+++|-...-+..+ .-|||.....+.+.. +|..++|+|||||.
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E------------------~GGITQhIGAF~V~~p~G~~iTFLDTPGHa 212 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGE------------------AGGITQHIGAFTVTLPSGKSITFLDTPGHA 212 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhh------------------cCCccceeceEEEecCCCCEEEEecCCcHH
Confidence 46789999999999999999999532221111 146888888877766 67899999999999
Q ss_pred CchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCCcHHHHHHHHHHhhCCccEEEeccC
Q 007325 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPV 246 (608)
Q Consensus 167 df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~pi 246 (608)
-|..+..++...+|.+|+||.+.+|+++||.+.++.++..++|+++++||+|+++++.+++..++.+. |.
T Consensus 213 AF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~~~-gi--------- 282 (683)
T KOG1145|consen 213 AFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGANPEKVKRELLSQ-GI--------- 282 (683)
T ss_pred HHHHHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCCCHHHHHHHHHHc-Cc---------
Confidence 99999999999999999999999999999999999999999999999999999999988887777531 10
Q ss_pred CCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHHhcCCCCCHHHHHHHHH
Q 007325 247 GAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIR 326 (608)
Q Consensus 247 ~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l~~~~~~~~el~~~l~ 326 (608)
..|.|
T Consensus 283 -----------------------------------------------------------~~E~~---------------- 287 (683)
T KOG1145|consen 283 -----------------------------------------------------------VVEDL---------------- 287 (683)
T ss_pred -----------------------------------------------------------cHHHc----------------
Confidence 00111
Q ss_pred hhcccCcceeeeeeccCCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccchhccccCCCCCeEEEEEEeeecCCCceE
Q 007325 327 KGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSL 406 (608)
Q Consensus 327 ~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~~G~l 406 (608)
|.-++++.+||++|.|++.|.+++.-.. +..+.+.+|++|+-++|.....|+++|.+
T Consensus 288 -----GGdVQvipiSAl~g~nl~~L~eaill~A------------------e~mdLkA~p~g~~eg~VIES~vdkg~G~~ 344 (683)
T KOG1145|consen 288 -----GGDVQVIPISALTGENLDLLEEAILLLA------------------EVMDLKADPKGPAEGWVIESSVDKGRGPV 344 (683)
T ss_pred -----CCceeEEEeecccCCChHHHHHHHHHHH------------------HHhhcccCCCCCceEEEEEeeecCCccce
Confidence 2336788899999999999999987542 22345667899999999999999999999
Q ss_pred EEEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCeeecCCEEEEcCCCcc-cccceeccCCCC---------
Q 007325 407 TFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDT-ITGETLCDADHP--------- 476 (608)
Q Consensus 407 a~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~-~~GdtL~~~~~~--------- 476 (608)
+.+-|-.|||++|+.+..... -.||..|+-..| +++++|.||.-+.|.|.+++ ..||-+...+..
T Consensus 345 aT~iVkrGTLkKG~vlV~G~~--w~KVr~l~D~nG---k~i~~A~Ps~pv~V~GwkdlP~aGD~vleVeSe~~Ar~~~~~ 419 (683)
T KOG1145|consen 345 ATVIVKRGTLKKGSVLVAGKS--WCKVRALFDHNG---KPIDEATPSQPVEVLGWKDLPIAGDEVLEVESEDRARKVLSK 419 (683)
T ss_pred eEEEEeccccccccEEEEech--hhhhhhhhhcCC---CCccccCCCCceEeecccCCCCCCceEEEEecHHHHHHHHHH
Confidence 999999999999999986543 245666666555 67999999999999999985 568876311100
Q ss_pred ------------------------------cccC--------CCC--CCCceEEEEEEeCCCCCHHHHHHHHHHHHHhCC
Q 007325 477 ------------------------------ILLE--------RMD--FPDPVIKVAIEPKTKADIDKMANGLIKLAQEDP 516 (608)
Q Consensus 477 ------------------------------~~l~--------~~~--~~~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDP 516 (608)
-... .++ ...|.+.+-|...-.+..+.++++|+-|..+--
T Consensus 420 R~~~~~~Ek~~~~~e~~~~~~~~~~~~~~a~r~~~~~~~~~~~v~~~~~~~~~niIiK~DV~GS~EAv~d~L~tl~~~~v 499 (683)
T KOG1145|consen 420 RKDESEQEKISRDLEDIEEQREEAAEALLAKREEGENIGRKTRVELHEQNPLFNIIIKCDVQGSAEAVLDALSTLNSEQV 499 (683)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhccccceecccccCCcceEEEEEecccchHHHHHHHHhhcCCCce
Confidence 0000 122 236899999999999999999999998885555
Q ss_pred eeEE
Q 007325 517 SFHF 520 (608)
Q Consensus 517 sl~v 520 (608)
.+.+
T Consensus 500 ~l~~ 503 (683)
T KOG1145|consen 500 KLNV 503 (683)
T ss_pred EEEE
Confidence 5544
No 58
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.96 E-value=4.9e-28 Score=269.35 Aligned_cols=342 Identities=20% Similarity=0.256 Sum_probs=220.9
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceee--ccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCC
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEV--HEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~--~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 166 (608)
+.+.|+|+||+|||||||+++|..........|.+ ..|.+..++...+...|.+.......+.+ ..++|||||||.
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~iDTPG~e 82 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKI--PGLLFIDTPGHE 82 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceecccccccccc--CCEEEEECCChH
Confidence 45799999999999999999996333222222211 12222222222222222221111111111 137999999999
Q ss_pred CchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCCcHHHHHHHHHHhhCCccEEEeccC
Q 007325 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPV 246 (608)
Q Consensus 167 df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~pi 246 (608)
+|...+.++++.+|++|+|+|+++|+..++.+.+..+...++|+++|+||+|+... +.. ..+
T Consensus 83 ~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~-~~~-------~~~---------- 144 (586)
T PRK04004 83 AFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPG-WKS-------TED---------- 144 (586)
T ss_pred HHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchh-hhh-------hcC----------
Confidence 99999999999999999999999999999999999999999999999999998521 000 000
Q ss_pred CCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHH--HHhcCCCCCHHHHHHH
Q 007325 247 GAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAME--SYLEGNEPDEETIKKL 324 (608)
Q Consensus 247 ~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e--~~l~~~~~~~~el~~~ 324 (608)
..+.+.......... ..+++.+.+ .+|.+..+..+.+..
T Consensus 145 -----------------------------------~~~~e~~~~~~~~v~---~~f~~~l~ev~~~L~~~g~~~e~~~~- 185 (586)
T PRK04004 145 -----------------------------------APFLESIEKQSQRVQ---QELEEKLYELIGQLSELGFSADRFDR- 185 (586)
T ss_pred -----------------------------------chHHHHHhhhhHHHH---HHHHHHHHHHHHHHHhcCCChhhhhh-
Confidence 000000000000000 011111111 234444444443332
Q ss_pred HHhhcccCcceeeeeeccCCCCChHHHHHHHHH----hCCCCCCCCCCCCCCCCCccchhccccCCCCCeEEEEEEeeec
Q 007325 325 IRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVD----YLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSD 400 (608)
Q Consensus 325 l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~----~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d 400 (608)
++. .+..+|++.+||++|.|+++|++.+.. ++|.+.. .+++.|+.+.|++++.+
T Consensus 186 ~~~---~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~~~l~~~l~-------------------~~~~~~~~~~V~ev~~~ 243 (586)
T PRK04004 186 VKD---FTKTVAIVPVSAKTGEGIPDLLMVLAGLAQRYLEERLK-------------------IDVEGPGKGTVLEVKEE 243 (586)
T ss_pred hhc---cCCCceEeeccCCCCCChHHHHHHHHHHHHHHHHHhhc-------------------cCCCCCeEEEEEEEEEe
Confidence 221 234578899999999999999998864 3443332 23578999999999999
Q ss_pred CCCceEEEEEEecceeCCCCEEEeCCCCc--eeecceEEEee--------cCceeecCeeecCCEEEE--cCCCcccccc
Q 007325 401 PFVGSLTFVRVYAGTLSAGSYVLNANKGK--KERIGRLLEMH--------ANSREDVKVALAGDIIAL--AGLKDTITGE 468 (608)
Q Consensus 401 ~~~G~la~~RV~sG~l~~g~~v~~~~~~~--~~ki~~i~~~~--------g~~~~~v~~a~aGdIv~i--~gl~~~~~Gd 468 (608)
++.|.+++++|++|+|++||.|...+.+. ..+|..|.... +.....+++|.|..-+-| .|++++..|+
T Consensus 244 ~g~G~v~~~~v~~GtL~~Gd~vv~~~~~~~i~~kVr~l~~~~~~~e~~~~~~~~~~~~~~~~~~~v~i~~~gl~~~~~g~ 323 (586)
T PRK04004 244 RGLGTTIDVILYDGTLRKGDTIVVGGKDGPIVTKVRALLKPRPLDEMRDPEDKFKPVDEVVAAAGVKISAPDLEDALAGS 323 (586)
T ss_pred CCCceEEEEEEEcCEEECCCEEEECcCCCcceEEEEEEecCcchhhccccccccccccccCCCCceEEEeCCccccCCCC
Confidence 99999999999999999999998877653 35788887652 224466777777665555 5898888898
Q ss_pred eeccCCCCc----------ccCCCCCCCceEEEEEEeCCCCCHHHHHHHHHHH
Q 007325 469 TLCDADHPI----------LLERMDFPDPVIKVAIEPKTKADIDKMANGLIKL 511 (608)
Q Consensus 469 tL~~~~~~~----------~l~~~~~~~Pv~~~aiep~~~~d~~kL~~aL~~L 511 (608)
.+.-..+.. .+..+......+.+-|.+...+..+.|.++|+++
T Consensus 324 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~vivkad~~Gs~EAi~~~l~~~ 376 (586)
T PRK04004 324 PLRVVRDEDVEEVKEEVEEEIEEIRIETDEEGVVVKADTLGSLEALVNELREE 376 (586)
T ss_pred eEEEeCcHHHHHHHHHHHHHHHhccccccccCEEEEeCCccHHHHHHHHHHhC
Confidence 874322110 0111222345678888899999999999998875
No 59
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.96 E-value=3.5e-28 Score=239.29 Aligned_cols=129 Identities=48% Similarity=0.632 Sum_probs=117.9
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeec----------CeeEEEE
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN----------KHRINII 160 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~----------~~~i~li 160 (608)
|||+|+||++||||||+++|++.+|.+.... ...++++|+.+.|++||+|+.++..++.|. ++.++||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~--~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~ii 78 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKL--AGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLI 78 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCcccc--CCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEE
Confidence 7999999999999999999999988765442 223578999999999999999998888886 7889999
Q ss_pred eCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCC
Q 007325 161 DTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (608)
Q Consensus 161 DTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~ 221 (608)
|||||.+|..++..+++.+|++|+|||+.+|+..+++.+++.+...++|+++|+||+|+..
T Consensus 79 DTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~~ 139 (222)
T cd01885 79 DSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRLI 139 (222)
T ss_pred CCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcch
Confidence 9999999999999999999999999999999999999999999999999999999999864
No 60
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=6.2e-28 Score=248.72 Aligned_cols=249 Identities=24% Similarity=0.347 Sum_probs=208.7
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchHH
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (608)
.|+..||.++|||||+.++. | ...|..++|++||+|++.....+...++.+.|||+|||.+|...
T Consensus 2 ii~t~GhidHgkT~L~~alt---g------------~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~ 66 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALT---G------------GVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISN 66 (447)
T ss_pred eEEEeeeeeccchhhhhhhc---c------------cccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHH
Confidence 58899999999999999994 2 34688999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCE-EEEEeCCCcCCCc-HHHHHHHHHHhhCCccEEEeccCCCC
Q 007325 172 VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLGAN-FFRTRDMIVTNLGAKPLVVQLPVGAE 249 (608)
Q Consensus 172 ~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~-ivviNK~D~~~~~-~~~~~~~i~~~l~~~~~~~~~pi~~~ 249 (608)
+..++...|.+++|||+.+|++.||.+++..+...+++. ++|+||+|+.+.. .++.+++|.+.
T Consensus 67 miag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~~r~e~~i~~Il~~--------------- 131 (447)
T COG3276 67 LLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDEARIEQKIKQILAD--------------- 131 (447)
T ss_pred HHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccHHHHHHHHHHHHhh---------------
Confidence 999999999999999999999999999999999999998 8899999987532 11111111110
Q ss_pred CCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHHhcCCCCCHHHHHHHHHhhc
Q 007325 250 DNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGT 329 (608)
Q Consensus 250 ~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l~~~~~~~~el~~~l~~~~ 329 (608)
+.
T Consensus 132 ---------------------------------------------------------------------------l~--- 133 (447)
T COG3276 132 ---------------------------------------------------------------------------LS--- 133 (447)
T ss_pred ---------------------------------------------------------------------------cc---
Confidence 00
Q ss_pred ccCcceeeeeeccCCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccchhccccCCCCCeEEEEEEeeecCCCceEEEE
Q 007325 330 IAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFV 409 (608)
Q Consensus 330 ~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~~G~la~~ 409 (608)
-...|+|..|+.+|.||++|-+.|.+..- +.+ .+.+.||..+|...+..+++|.+..|
T Consensus 134 --l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~-~~e-------------------~d~~~~fri~IDraFtVKGvGTVVtG 191 (447)
T COG3276 134 --LANAKIFKTSAKTGRGIEELKNELIDLLE-EIE-------------------RDEQKPFRIAIDRAFTVKGVGTVVTG 191 (447)
T ss_pred --cccccccccccccCCCHHHHHHHHHHhhh-hhh-------------------hccCCceEEEEeeEEEeccccEEEEe
Confidence 01146788899999999999999988764 111 13479999999999999999999999
Q ss_pred EEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCeeecCCEEEE--cCC--CcccccceeccCC
Q 007325 410 RVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGL--KDTITGETLCDAD 474 (608)
Q Consensus 410 RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl--~~~~~GdtL~~~~ 474 (608)
.++||+++.||+++..+.++..+|.+|... -.++++|.||+-|++ .|. +.+..|+.|.++.
T Consensus 192 tv~sG~V~v~D~L~l~p~~k~v~VRsIq~~----d~d~~~a~AG~RVgLaL~~v~~eei~RG~~L~~~~ 256 (447)
T COG3276 192 TVLSGEVKVGDKLYLSPINKEVRVRSIQAH----DVDVEEAKAGQRVGLALKGVEKEEIERGDWLLKPE 256 (447)
T ss_pred EEeeeeEEECCEEEEecCCCeEEEEeeeec----CcchhhccccceeeeecCCCCHHHhhcccEeccCC
Confidence 999999999999999999999999988633 367899999999998 343 2367899998765
No 61
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.95 E-value=2.8e-27 Score=228.98 Aligned_cols=127 Identities=31% Similarity=0.451 Sum_probs=114.1
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceee-ccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCch
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEV-HEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~-~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~ 169 (608)
.||+++||+|+|||||+++|++... ..|.. ..+...+|+.+.|++||+|++.....+.+++.+++|+|||||.+|.
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~---~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~ 79 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLA---KKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYI 79 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH---hcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHH
Confidence 5899999999999999999987643 22222 1334679999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCC-EEEEEeCCCcC
Q 007325 170 LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRL 220 (608)
Q Consensus 170 ~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p-~ivviNK~D~~ 220 (608)
.++.+++..+|++++|||+.+|+..+++++|+.+...++| +|+|+||+|+.
T Consensus 80 ~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~ 131 (195)
T cd01884 80 KNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMV 131 (195)
T ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCC
Confidence 9999999999999999999999999999999999999998 66889999986
No 62
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=1.1e-26 Score=228.51 Aligned_cols=328 Identities=23% Similarity=0.357 Sum_probs=229.2
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEee-----------------
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW----------------- 152 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~----------------- 152 (608)
--||+++||++||||||+.+|. | -.+|.+.+|-+||||+...+.....
T Consensus 10 ~vNIG~vGHVdHGKtTlv~Als---G------------vwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~ 74 (415)
T COG5257 10 EVNIGMVGHVDHGKTTLTKALS---G------------VWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPK 74 (415)
T ss_pred ceEeeeeeecccchhhheehhh---c------------eeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCC
Confidence 3699999999999999999993 3 3568889999999999988766543
Q ss_pred ---c------CeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCC-CchhHHHHHHHHHhcCCCEE-EEEeCCCcCC
Q 007325 153 ---N------KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG-VEPQSETVWRQADKYGVPRI-CFVNKMDRLG 221 (608)
Q Consensus 153 ---~------~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g-~~~~t~~~~~~~~~~~~p~i-vviNK~D~~~ 221 (608)
. -+++.|+|.|||.-+...+.++....|+|++||+|++. .++||.+++-.+.-.++..+ ++-||+|+..
T Consensus 75 C~~cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~ 154 (415)
T COG5257 75 CPNCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVS 154 (415)
T ss_pred CCCCCCCccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceec
Confidence 0 14688999999999999999999999999999999965 68999999999988888765 5569999875
Q ss_pred CcHHHHHHHHHHhhCCccEEEeccCCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHh
Q 007325 222 ANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVE 301 (608)
Q Consensus 222 ~~~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~ 301 (608)
.+
T Consensus 155 ~E------------------------------------------------------------------------------ 156 (415)
T COG5257 155 RE------------------------------------------------------------------------------ 156 (415)
T ss_pred HH------------------------------------------------------------------------------
Confidence 32
Q ss_pred hcHHHHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeeccCCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccchhc
Q 007325 302 LDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLE 381 (608)
Q Consensus 302 ~dd~l~e~~l~~~~~~~~el~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~ 381 (608)
+.+|.| +++++.++..++.+ .|++.+||.++.+|+.|+++|.+++|.|..
T Consensus 157 ---~AlE~y--------~qIk~FvkGt~Ae~--aPIIPiSA~~~~NIDal~e~i~~~IptP~r----------------- 206 (415)
T COG5257 157 ---RALENY--------EQIKEFVKGTVAEN--APIIPISAQHKANIDALIEAIEKYIPTPER----------------- 206 (415)
T ss_pred ---HHHHHH--------HHHHHHhcccccCC--CceeeehhhhccCHHHHHHHHHHhCCCCcc-----------------
Confidence 112222 23333333222222 478888999999999999999999999965
Q ss_pred cccCCCCCeEEEEEEeeec--------CCCceEEEEEEecceeCCCCEEEeCCC-----Ccee----ecceEEEeecCce
Q 007325 382 RAASDDEPFAGLAFKIMSD--------PFVGSLTFVRVYAGTLSAGSYVLNANK-----GKKE----RIGRLLEMHANSR 444 (608)
Q Consensus 382 ~~~~~~~p~~~~V~K~~~d--------~~~G~la~~RV~sG~l~~g~~v~~~~~-----~~~~----ki~~i~~~~g~~~ 444 (608)
|.+.|..++|.+.+.. .-.|-+.-+-+..|.|+.||++-..+. +.+. -..+|..+++..
T Consensus 207 ---d~~~~p~m~v~RSFDVNkPGt~~~~L~GGViGGsl~~G~l~vGDEIEIrPGi~v~k~~k~~~~pi~T~i~Sl~ag~- 282 (415)
T COG5257 207 ---DLDKPPRMYVARSFDVNKPGTPPEELKGGVIGGSLVQGVLRVGDEIEIRPGIVVEKGGKTVWEPITTEIVSLQAGG- 282 (415)
T ss_pred ---CCCCCceEEEEeecccCCCCCCHHHccCceecceeeeeeEecCCeEEecCCeEeecCCceEEEEeeEEEEEEEeCC-
Confidence 3578889999998742 235678889999999999999985431 1111 134455555543
Q ss_pred eecCeeecCCEEEE-cCCCc-ccccceeccC--CCCcccCCCCCCCceEEEEEEeCCCCCHHHHHHHHHHHHHhCCeeEE
Q 007325 445 EDVKVALAGDIIAL-AGLKD-TITGETLCDA--DHPILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHF 520 (608)
Q Consensus 445 ~~v~~a~aGdIv~i-~gl~~-~~~GdtL~~~--~~~~~l~~~~~~~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDPsl~v 520 (608)
.++++|.+|-.++| ++|+- +.++|-|... ..+- ..|+...++.++-. -|.++.-.+-.+++
T Consensus 283 ~~~~ea~PGGLvgvGT~lDP~ltKaD~L~G~V~G~pG-----~lPpv~~~~~ie~~----------LL~RvvG~~~e~kv 347 (415)
T COG5257 283 EDVEEARPGGLVGVGTKLDPTLTKADALVGQVVGKPG-----TLPPVWTSIRIEYH----------LLERVVGTKEELKV 347 (415)
T ss_pred eeeeeccCCceEEEecccCcchhhhhhhccccccCCC-----CCCCceEEEEEEee----------ehhhhhCccccccc
Confidence 68999999999999 67775 3456766542 1122 23333445555532 23444444455666
Q ss_pred EEeCCCCcEEEEeeChhhHHHHHHHHHhhcCeEEEEecceE
Q 007325 521 SRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQV 561 (608)
Q Consensus 521 ~~~~etge~vl~g~GelHLev~~~rL~~~f~vev~~s~p~V 561 (608)
+- -.++|.++...|.----=++...+.. -++|.+..|.-
T Consensus 348 ep-ik~~E~Lml~VGtatT~GvV~~~k~d-~~ev~Lk~Pvc 386 (415)
T COG5257 348 EP-IKTNEVLMLNVGTATTVGVVTSAKKD-EIEVKLKRPVC 386 (415)
T ss_pred cc-ccCCCeEEEEeecceeEEEEEEecCc-eEEEEecccee
Confidence 54 25788888877754221112222221 36666666644
No 63
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.95 E-value=3.4e-26 Score=253.53 Aligned_cols=330 Identities=21% Similarity=0.278 Sum_probs=214.9
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEee----------------
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW---------------- 152 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~---------------- 152 (608)
+.+.|+++||+|||||||+|+|.......... .|+|.+.....+.+
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~------------------ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v 64 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREA------------------GGITQHIGATEIPMDVIEGICGDLLKKFKI 64 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccC------------------CceecccCeeEeeecccccccccccccccc
Confidence 45799999999999999999997432211111 12333222222211
Q ss_pred --cCeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCCcHHHHHHH
Q 007325 153 --NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDM 230 (608)
Q Consensus 153 --~~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~ 230 (608)
....+.|||||||.+|...+.++++.+|++++|+|+++|+..++.+.+..+...++|+++|+||+|+... +.
T Consensus 65 ~~~~~~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~-~~----- 138 (590)
T TIGR00491 65 RLKIPGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPG-WR----- 138 (590)
T ss_pred ccccCcEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccch-hh-----
Confidence 1124899999999999999999999999999999999999999999999999899999999999998631 00
Q ss_pred HHHhhCCccEEEeccCCCCCCeeeEEecccceeEEecCcCCCceeee--ecCcHhHHHHHHHHHHHHHHHHHhhcHHHHH
Q 007325 231 IVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAY--EDIPANLQKMAQEYRSQMIETIVELDDEAME 308 (608)
Q Consensus 231 i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e 308 (608)
... +..|.. ...+......+.+....++..++
T Consensus 139 --~~~------------------------------------~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~-------- 172 (590)
T TIGR00491 139 --SHE------------------------------------GRPFMESFSKQEIQVQQNLDTKVYNLVIKLH-------- 172 (590)
T ss_pred --hcc------------------------------------CchHHHHHHhhhHHHHHHHHHHHHHHHHHHH--------
Confidence 000 000000 00000000011111111111111
Q ss_pred HHhcCCCCCHHHHHHHHHhhcccCcceeeeeeccCCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccchhccccCCCC
Q 007325 309 SYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDE 388 (608)
Q Consensus 309 ~~l~~~~~~~~el~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (608)
...+..+.+.. + ...+..+|++++||++|.|+++|+++|..+.-.-.. .....++++
T Consensus 173 ----~~G~~~e~~~~-i---~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~~l~---------------~~l~~~~~~ 229 (590)
T TIGR00491 173 ----EEGFEAERFDR-V---TDFTKTVAIIPISAITGEGIPELLTMLAGLAQQYLE---------------EQLKLEEEG 229 (590)
T ss_pred ----hcCccHHhhhh-h---hhcCCCceEEEeecCCCCChhHHHHHHHHHHHHHhh---------------hhhccCCCC
Confidence 11122221111 1 123445789999999999999999998653211000 011224578
Q ss_pred CeEEEEEEeeecCCCceEEEEEEecceeCCCCEEEeCCCCc--eeecceEEEeec--------CceeecCeee--cCCEE
Q 007325 389 PFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGK--KERIGRLLEMHA--------NSREDVKVAL--AGDII 456 (608)
Q Consensus 389 p~~~~V~K~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~--~~ki~~i~~~~g--------~~~~~v~~a~--aGdIv 456 (608)
|+.+.|..++.+.+.|.++.++|++|+|++||.|...+.+. ..+|..|+...+ .....++++. +|--+
T Consensus 230 ~~~~~V~e~~~~~G~G~v~t~~v~~G~l~~GD~iv~~~~~~~i~~kVr~l~~~~~l~e~r~~~~~~~~~~~~~~~~~~~v 309 (590)
T TIGR00491 230 PARGTILEVKEETGLGMTIDAVIYDGILRKGDTIAMAGSDDVIVTRVRALLKPRPLEEMRESRKKFQKVDEVVAAAGVKI 309 (590)
T ss_pred CeEEEEEEEEEcCCCceEEEEEEEcCEEeCCCEEEEccCCCcccEEEEEecCCCccccccccccccCCcceecCCCceeE
Confidence 99999999999999999999999999999999999887653 457777775543 1234566644 45556
Q ss_pred EEcCCCcccccceeccCCCCc----------ccCCCCCCCceEEEEEEeCCCCCHHHHHHHHHHH
Q 007325 457 ALAGLKDTITGETLCDADHPI----------LLERMDFPDPVIKVAIEPKTKADIDKMANGLIKL 511 (608)
Q Consensus 457 ~i~gl~~~~~GdtL~~~~~~~----------~l~~~~~~~Pv~~~aiep~~~~d~~kL~~aL~~L 511 (608)
.+.||++...|+.+....+.. ....+.+....+.+-|.+...+..+.|.++|+++
T Consensus 310 ~~~~l~~~~aG~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~vivkad~~Gs~EAl~~~l~~~ 374 (590)
T TIGR00491 310 AAPGLDDVMAGSPIRVVTDEEIEKVKEEILKEVEEIKIDTDEEGVVVKADTLGSLEALVNELRDM 374 (590)
T ss_pred EecCCCCCCCCCEEEEcCcHHHHHHHHHHHHHhhhcccccccccEEEEecCcchHHHHHHHHHhC
Confidence 668998888898874332110 0112223355688899999999999999999976
No 64
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=9.5e-27 Score=245.94 Aligned_cols=276 Identities=23% Similarity=0.295 Sum_probs=210.5
Q ss_pred cCCCCCceeEEEEcCCCCchHHHHHHHHHhhCCcccc------------eee-ccCCccccchhhhhhcceeEeecEEEE
Q 007325 84 VIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKI------------GEV-HEGTATMDWMEQEQERGITITSAATTT 150 (608)
Q Consensus 84 ~~~~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~------------g~~-~~g~~~~d~~~~e~~~giTi~~~~~~~ 150 (608)
+..++...+.+++||+|+|||||+.+|||..|.+... |.- +....++|...+|++||+|++.....+
T Consensus 171 q~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~f 250 (603)
T KOG0458|consen 171 QSDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWF 250 (603)
T ss_pred ccCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEE
Confidence 3445567899999999999999999999988876431 111 344578999999999999999999999
Q ss_pred eecCeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCC-------CchhHHHHHHHHHhcCCCE-EEEEeCCCcCCC
Q 007325 151 YWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG-------VEPQSETVWRQADKYGVPR-ICFVNKMDRLGA 222 (608)
Q Consensus 151 ~~~~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g-------~~~~t~~~~~~~~~~~~p~-ivviNK~D~~~~ 222 (608)
+-+.+.++|+|+|||.||...+..+...+|.+|+|||++.+ ...||+++...++..|+.. ||++||||..+.
T Consensus 251 es~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~W 330 (603)
T KOG0458|consen 251 ESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVSW 330 (603)
T ss_pred ecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccCc
Confidence 99999999999999999999999999999999999999943 4679999999999999876 556899999887
Q ss_pred cHHHHHHHHHHhhCCccEEEeccCCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhh
Q 007325 223 NFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVEL 302 (608)
Q Consensus 223 ~~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~ 302 (608)
+.++ +++|++.++.
T Consensus 331 sq~R-F~eIk~~l~~----------------------------------------------------------------- 344 (603)
T KOG0458|consen 331 SQDR-FEEIKNKLSS----------------------------------------------------------------- 344 (603)
T ss_pred cHHH-HHHHHHHHHH-----------------------------------------------------------------
Confidence 6332 3333332221
Q ss_pred cHHHHHHHhcCCCCCHHHHHHHHHhhccc--CcceeeeeeccCCCCChH---------------HHHHHHHHhCCCCCCC
Q 007325 303 DDEAMESYLEGNEPDEETIKKLIRKGTIA--GSFVPVLCGSAFKNKGVQ---------------PLLDAVVDYLPSPLDL 365 (608)
Q Consensus 303 dd~l~e~~l~~~~~~~~el~~~l~~~~~~--~~~~Pv~~~SA~~~~Gi~---------------~Lld~i~~~lP~p~~~ 365 (608)
||. + .-++.. -+|+|+ |++.|.|+- .||+.|.. +-.|..
T Consensus 345 -------fL~----------~--~~gf~es~v~FIPi---SGl~GeNL~k~~~~~~l~~WY~Gp~LL~~id~-~~~p~~- 400 (603)
T KOG0458|consen 345 -------FLK----------E--SCGFKESSVKFIPI---SGLSGENLIKIEQENELSQWYKGPTLLSQIDS-FKIPER- 400 (603)
T ss_pred -------HHH----------H--hcCcccCCcceEec---ccccCCcccccccchhhhhhhcCChHHHHHhh-ccCCCC-
Confidence 000 0 000011 134443 666666642 46777766 433432
Q ss_pred CCCCCCCCCCccchhccccCCCCCeEEEEEEeeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeecCcee
Q 007325 366 PAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSRE 445 (608)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~ 445 (608)
..+.||++-|..++..+..|...+|||-||.|.+||+||+.+......|..|..- -.
T Consensus 401 -------------------~~~kPl~ltIsdi~~~~~~~~~i~gkiesG~iq~gqkl~i~~s~e~~~vk~l~~~----~~ 457 (603)
T KOG0458|consen 401 -------------------PIDKPLRLTISDIYPLPSSGVSISGKIESGYIQPGQKLYIMTSREDATVKGLTSN----DE 457 (603)
T ss_pred -------------------cccCCeEEEhhheeecCCCeeEEEEEEeccccccCCEEEEecCcceEEEEeeecC----CC
Confidence 1256999999999999999999999999999999999999988877777776522 46
Q ss_pred ecCeeecCCEEEE--cCCC--cccccceecc
Q 007325 446 DVKVALAGDIIAL--AGLK--DTITGETLCD 472 (608)
Q Consensus 446 ~v~~a~aGdIv~i--~gl~--~~~~GdtL~~ 472 (608)
+...|.|||-|.+ .++. .+..||+++.
T Consensus 458 ~~~~a~AGD~Vsl~L~~i~~n~v~~g~i~~~ 488 (603)
T KOG0458|consen 458 PKTWAVAGDNVSLKLPGILPNLVQVGDIADS 488 (603)
T ss_pred cceeEeeCCEEEEecCccChhhcccceeeec
Confidence 7888999999988 4432 3788999994
No 65
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.94 E-value=5.3e-26 Score=228.16 Aligned_cols=284 Identities=25% Similarity=0.342 Sum_probs=219.6
Q ss_pred CCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCC----ccccchhhhhhcceeEeecEEEEeec---------
Q 007325 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGT----ATMDWMEQEQERGITITSAATTTYWN--------- 153 (608)
Q Consensus 87 ~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~----~~~d~~~~e~~~giTi~~~~~~~~~~--------- 153 (608)
.....+|+..||.|||||||+..|. .|..++|. .+.|..+.|.++|.|.+.+..-+-++
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~Lv--------tG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlkn 185 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLV--------TGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKN 185 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEE--------ecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecC
Confidence 3445799999999999999999996 34555554 67899999999999988887776552
Q ss_pred --------------CeeEEEEeCCCCCCchHHHHHHH--HhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCC
Q 007325 154 --------------KHRINIIDTPGHVDFTLEVERAL--RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKM 217 (608)
Q Consensus 154 --------------~~~i~liDTPG~~df~~~~~~~l--~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~ 217 (608)
++.+.|+||-||+.+...+.+++ ...|..++||.|.+|++..|++++..+...++|+|+|++|+
T Consensus 186 Pld~aE~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~ 265 (527)
T COG5258 186 PLDEAEKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKI 265 (527)
T ss_pred cccHHHHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEEEec
Confidence 35688999999999999999988 45699999999999999999999999999999999999999
Q ss_pred CcCC-CcHHHHHHHHHHhhCCccEEEeccCCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHH
Q 007325 218 DRLG-ANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMI 296 (608)
Q Consensus 218 D~~~-~~~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~ 296 (608)
|+.. .++..++++|...|.. .- .+|. .-.
T Consensus 266 D~~~ddr~~~v~~ei~~~Lk~-v~--Rip~------------------~vk----------------------------- 295 (527)
T COG5258 266 DMVPDDRFQGVVEEISALLKR-VG--RIPL------------------IVK----------------------------- 295 (527)
T ss_pred ccCcHHHHHHHHHHHHHHHHH-hc--ccce------------------eee-----------------------------
Confidence 9975 4577788888776643 00 0110 000
Q ss_pred HHHHhhcHHHHHHHhcCCCCCHHHHHHHHHhhcccCc-ceeeeeeccCCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 007325 297 ETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGS-FVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPEN 375 (608)
Q Consensus 297 e~~~~~dd~l~e~~l~~~~~~~~el~~~l~~~~~~~~-~~Pv~~~SA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~ 375 (608)
+.||.. . ...+...++ ++|+|.+|+.+|.|++ ||+.+..+||.-..
T Consensus 296 ----~~~d~v----------------~-aa~a~k~~~~vvPi~~tSsVTg~Gld-lL~e~f~~Lp~rr~----------- 342 (527)
T COG5258 296 ----DTDDVV----------------L-AAKAMKAGRGVVPIFYTSSVTGEGLD-LLDEFFLLLPKRRR----------- 342 (527)
T ss_pred ----ccchhH----------------H-hhhhhhcCCceEEEEEEecccCccHH-HHHHHHHhCCcccc-----------
Confidence 001100 0 011233444 7899999999999986 66666677875421
Q ss_pred ccchhccccCCCCCeEEEEEEeeecCCCceEEEEEEecceeCCCCEEEeCCCC----ceeecceEEEeecCceeecCeee
Q 007325 376 PEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKG----KKERIGRLLEMHANSREDVKVAL 451 (608)
Q Consensus 376 ~~~~~~~~~~~~~p~~~~V~K~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~----~~~ki~~i~~~~g~~~~~v~~a~ 451 (608)
.+..+||.+||.|+++..++|.++.+-|-+|.|+.||.|+..+.. ...+|++|- |+ +..|++|.
T Consensus 343 --------~~d~g~flmYId~iYsVtGVGtVvsGsV~~G~l~~gd~vllGP~~~G~fr~v~vkSIe-mh---~~rvdsa~ 410 (527)
T COG5258 343 --------WDDEGPFLMYIDKIYSVTGVGTVVSGSVKSGILHVGDTVLLGPFKDGKFREVVVKSIE-MH---HYRVDSAK 410 (527)
T ss_pred --------cCCCCCeEEEEEeeEEEeeeEEEEeeeEEeeeeccCCEEEEccCCCCcEEEEEEEEEE-Ee---eEEecccc
Confidence 134799999999999999999999999999999999999987543 346677764 33 57899999
Q ss_pred cCCEEEE--cCCCc--ccccceeccC
Q 007325 452 AGDIIAL--AGLKD--TITGETLCDA 473 (608)
Q Consensus 452 aGdIv~i--~gl~~--~~~GdtL~~~ 473 (608)
||+|+.+ .|... +..|.+|+..
T Consensus 411 aG~iig~Al~gv~~e~lerGMVl~~~ 436 (527)
T COG5258 411 AGSIIGIALKGVEKEELERGMVLSAG 436 (527)
T ss_pred CCcEEEEEecccCHHHHhcceEecCC
Confidence 9999987 56554 7889998765
No 66
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.94 E-value=4.8e-26 Score=226.98 Aligned_cols=313 Identities=24% Similarity=0.271 Sum_probs=211.5
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccc---------------eeeccCCccccchhhhhhcceeEeecEEEEeec
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKI---------------GEVHEGTATMDWMEQEQERGITITSAATTTYWN 153 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~---------------g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~ 153 (608)
...+++.+|+++-|||||+.+||+.+..+..- |.-.+-.-.+|-.+.|++.||||+..+..|...
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~ 84 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTE 84 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccc
Confidence 35689999999999999999999877654321 111222345788899999999999999999999
Q ss_pred CeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEE-EEeCCCcCCCcHHHHHHHHH
Q 007325 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRIC-FVNKMDRLGANFFRTRDMIV 232 (608)
Q Consensus 154 ~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~iv-viNK~D~~~~~~~~~~~~i~ 232 (608)
.+++.+.|||||+.|...+..+..-||.+|++|||..|+..||+.+-..+...++++++ ++||||+.+.+. +.+++|.
T Consensus 85 KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e-~~F~~I~ 163 (431)
T COG2895 85 KRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSE-EVFEAIV 163 (431)
T ss_pred cceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccCH-HHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999865 589999987642 2222222
Q ss_pred HhhCCccEEEeccCCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHHhc
Q 007325 233 TNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLE 312 (608)
Q Consensus 233 ~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l~ 312 (608)
+.+. .+.++
T Consensus 164 ~dy~--------------------------------------------------------------------~fa~~--- 172 (431)
T COG2895 164 ADYL--------------------------------------------------------------------AFAAQ--- 172 (431)
T ss_pred HHHH--------------------------------------------------------------------HHHHH---
Confidence 2110 00000
Q ss_pred CCCCCHHHHHHHHHhhcccCcceeeeeeccCCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccchhc-cccCCCCCeE
Q 007325 313 GNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLE-RAASDDEPFA 391 (608)
Q Consensus 313 ~~~~~~~el~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~ 391 (608)
| ......++ +.||+.|.||-. ++. ..+++.|...-.-.+... .......||.
T Consensus 173 ------------L--~~~~~~~I---PiSAl~GDNV~~---------~s~-~mpWY~GptLLe~LE~v~i~~~~~~~~~R 225 (431)
T COG2895 173 ------------L--GLKDVRFI---PISALLGDNVVS---------KSE-NMPWYKGPTLLEILETVEIADDRSAKAFR 225 (431)
T ss_pred ------------c--CCCcceEE---echhccCCcccc---------ccc-CCCcccCccHHHHHhhcccccccccccee
Confidence 0 01111233 458888877531 110 111222110000000000 0111235555
Q ss_pred EEEEEeeecCCCceEEE-EEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCeeecCCEEEEcCCCc--ccccc
Q 007325 392 GLAFKIMSDPFVGSLTF-VRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKD--TITGE 468 (608)
Q Consensus 392 ~~V~K~~~d~~~G~la~-~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~--~~~Gd 468 (608)
..|--+. .|+..+-.| |+|-||++++||.|...+.|+..+|++|..+.| ++++|.||+-|.+.=-++ +..||
T Consensus 226 fPVQ~V~-Rp~~dfRGyaGtiasG~v~~Gd~vvvlPsG~~s~V~~Ivt~dg----~~~~A~aG~aVtl~L~deidisRGd 300 (431)
T COG2895 226 FPVQYVN-RPNLDFRGYAGTIASGSVKVGDEVVVLPSGKTSRVKRIVTFDG----ELAQASAGEAVTLVLADEIDISRGD 300 (431)
T ss_pred eceEEec-CCCCcccccceeeeccceecCCeEEEccCCCeeeEEEEeccCC----chhhccCCceEEEEEcceeecccCc
Confidence 5444332 343334444 788899999999999999999999999998865 468899999999863232 67899
Q ss_pred eeccCCCCcccCCCCCCCceEEEEEEeCCCCCHHHHHH
Q 007325 469 TLCDADHPILLERMDFPDPVIKVAIEPKTKADIDKMAN 506 (608)
Q Consensus 469 tL~~~~~~~~l~~~~~~~Pv~~~aiep~~~~d~~kL~~ 506 (608)
.|+..+.++. ..-.+..-++.+.=+|..++..-.|..
T Consensus 301 ~i~~~~~~~~-~~~~f~A~vvWm~~~pl~pGr~Y~lK~ 337 (431)
T COG2895 301 LIVAADAPPA-VADAFDADVVWMDEEPLLPGRSYDLKI 337 (431)
T ss_pred EEEccCCCcc-hhhhcceeEEEecCCCCCCCceEEEEe
Confidence 9998776553 222344556666666666665443333
No 67
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.93 E-value=1.9e-25 Score=220.87 Aligned_cols=130 Identities=32% Similarity=0.403 Sum_probs=115.2
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccce--eec-----cCC------ccccchhhhhhcceeEeecEEEEeecCeeEE
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIG--EVH-----EGT------ATMDWMEQEQERGITITSAATTTYWNKHRIN 158 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g--~~~-----~g~------~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~ 158 (608)
||+++||+|+|||||+++|++.+|.+.+.+ +++ .|. +++|+.+.|++||+|++.....+.|+++.++
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 799999999999999999999999877654 222 343 3899999999999999999999999999999
Q ss_pred EEeCCCCCCchHHHHHHHHhcCeEEEEEcCCC-------CCchhHHHHHHHHHhcC-CCEEEEEeCCCcCC
Q 007325 159 IIDTPGHVDFTLEVERALRVLDGAICLFDSVA-------GVEPQSETVWRQADKYG-VPRICFVNKMDRLG 221 (608)
Q Consensus 159 liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~-------g~~~~t~~~~~~~~~~~-~p~ivviNK~D~~~ 221 (608)
+||||||.+|...+..+++.+|++|+|||+++ +...++.+++..+...+ .|+++|+||+|+..
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~ 151 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVT 151 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEcccccc
Confidence 99999999999999999999999999999998 56778888888887777 46788999999874
No 68
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.93 E-value=1.4e-24 Score=207.29 Aligned_cols=130 Identities=40% Similarity=0.570 Sum_probs=110.9
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEee-----cCeeEEEEeCCCC
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-----NKHRINIIDTPGH 165 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~-----~~~~i~liDTPG~ 165 (608)
|||+++|++|+|||||+++|++..+.+...+. ...+.|+.+.|+.+|+|.......+.| .+..++||||||+
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 77 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREM---KEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGH 77 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCC---ceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCC
Confidence 69999999999999999999987765543221 135678888999999999888777755 4677999999999
Q ss_pred CCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCCc
Q 007325 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGAN 223 (608)
Q Consensus 166 ~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~ 223 (608)
.+|...+..+++.+|++|+|+|++++...++...|..+...++|+++|+||+|+...+
T Consensus 78 ~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~ 135 (179)
T cd01890 78 VDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSAD 135 (179)
T ss_pred hhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCC
Confidence 9999999999999999999999999888888888887777899999999999986543
No 69
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.93 E-value=5.8e-25 Score=215.72 Aligned_cols=131 Identities=27% Similarity=0.332 Sum_probs=116.5
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcc--cceeec-----------cCCccccchhhhhhcceeEeecEEEEeecCeeEE
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNY--KIGEVH-----------EGTATMDWMEQEQERGITITSAATTTYWNKHRIN 158 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~--~~g~~~-----------~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~ 158 (608)
+|+|+||+|||||||+++|++.+|.+. ..+.++ .+++++|+.+.|++||+|++.....+.|++.+++
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 589999999999999999999999876 333332 4568899999999999999999999999999999
Q ss_pred EEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCC-EEEEEeCCCcCCC
Q 007325 159 IIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGA 222 (608)
Q Consensus 159 liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p-~ivviNK~D~~~~ 222 (608)
|||||||.+|..++..+++.+|++|+|+|+++++..++..++..+...++| +|+|+||+|+...
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~ 145 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDY 145 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccC
Confidence 999999999999999999999999999999999999998888888888866 5668999998643
No 70
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.92 E-value=3.2e-24 Score=208.12 Aligned_cols=143 Identities=41% Similarity=0.576 Sum_probs=121.4
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCc
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 168 (608)
++|+|+++|++|+|||||+++|++..+.......+ ..+.+|+.+.|..+|+|+......+.+++..+++|||||+.+|
T Consensus 1 ~~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~--~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 78 (194)
T cd01891 1 DIRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEV--EERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADF 78 (194)
T ss_pred CccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcc--cccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHH
Confidence 37899999999999999999998766655443322 2366888899999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCCcHHHHHHHHHH
Q 007325 169 TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVT 233 (608)
Q Consensus 169 ~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~ 233 (608)
...+..+++.+|++++|+|++++...++..++..+...++|+++|+||+|+...+....++++++
T Consensus 79 ~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~ 143 (194)
T cd01891 79 GGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVFD 143 (194)
T ss_pred HHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHH
Confidence 99999999999999999999998888888888888788999999999999976655444444443
No 71
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.91 E-value=7.6e-23 Score=236.59 Aligned_cols=317 Identities=20% Similarity=0.213 Sum_probs=212.7
Q ss_pred hHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC------------------eeEEEEeCCC
Q 007325 103 KTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK------------------HRINIIDTPG 164 (608)
Q Consensus 103 KTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~------------------~~i~liDTPG 164 (608)
||||+++|....- ..+...|||++.....+.++. ..++||||||
T Consensus 474 KTtLLD~iR~t~v------------------~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPG 535 (1049)
T PRK14845 474 NTTLLDKIRKTRV------------------AKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPG 535 (1049)
T ss_pred cccHHHHHhCCCc------------------ccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCC
Confidence 9999999952111 122346889998888877642 1289999999
Q ss_pred CCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCC-CcHHHHHHHHHHhhCCccEEEe
Q 007325 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG-ANFFRTRDMIVTNLGAKPLVVQ 243 (608)
Q Consensus 165 ~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~-~~~~~~~~~i~~~l~~~~~~~~ 243 (608)
|.+|.....+++..+|++++|+|+++|++.++.+.+..+...++|+++|+||+|+.. .+...
T Consensus 536 he~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~----------------- 598 (1049)
T PRK14845 536 HEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISE----------------- 598 (1049)
T ss_pred cHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCcccccccc-----------------
Confidence 999998888888999999999999999999999999999999999999999999853 21000
Q ss_pred ccCCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHHhcCCCCCHHHHHH
Q 007325 244 LPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKK 323 (608)
Q Consensus 244 ~pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l~~~~~~~~el~~ 323 (608)
..++-..+....+...+++-+.+.+.-.+|.+ ..+..+. ..
T Consensus 599 ---------------------------------~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~-----~G~~~e~-~~ 639 (1049)
T PRK14845 599 ---------------------------------DEPFLLNFNEQDQHALTELEIKLYELIGKLYE-----LGFDADR-FD 639 (1049)
T ss_pred ---------------------------------chhhhhhhhhhHHHHHHHHHHHHHHHhhHHHh-----cCcchhh-hh
Confidence 00011111111111111111111111011111 1112111 11
Q ss_pred HHHhhcccCcceeeeeeccCCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccchhccccCCCCCeEEEEEEeeecCCC
Q 007325 324 LIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFV 403 (608)
Q Consensus 324 ~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~~ 403 (608)
.+. ..+..+|++++||++|.||+.|+++|....+.-.+ .....++++|+.++|..++.+++.
T Consensus 640 ~~~---d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~~~l~---------------~~L~~~~~~~~~g~VlEv~~~kG~ 701 (1049)
T PRK14845 640 RVQ---DFTRTVAIVPVSAKTGEGIPELLMMVAGLAQKYLE---------------ERLKLNVEGYAKGTILEVKEEKGL 701 (1049)
T ss_pred hhh---hcCCCceEEEEEcCCCCCHHHHHHHHHHhhHHhhh---------------hhhccCCCCceEEEEEEEEEecCc
Confidence 111 12456899999999999999999988754332111 001234578999999999999999
Q ss_pred ceEEEEEEecceeCCCCEEEeCCCCc--eeecceEEEee--------cCceeecCeeecCCEEEE--cCCCcccccceec
Q 007325 404 GSLTFVRVYAGTLSAGSYVLNANKGK--KERIGRLLEMH--------ANSREDVKVALAGDIIAL--AGLKDTITGETLC 471 (608)
Q Consensus 404 G~la~~RV~sG~l~~g~~v~~~~~~~--~~ki~~i~~~~--------g~~~~~v~~a~aGdIv~i--~gl~~~~~GdtL~ 471 (608)
|.++.+.|++|+|++||.|...+.+. ..+|..|+... +.....+++|.|+.-|-| .|++++..|+.+.
T Consensus 702 G~vvt~iv~~G~Lk~GD~iv~g~~~~~i~~kVRaLl~p~pl~e~r~~~~~~~~~~~~~~a~~vki~a~gl~~~~aG~~~~ 781 (1049)
T PRK14845 702 GTTIDAIIYDGTLRRGDTIVVGGPDDVIVTKVRALLKPKPLDEIRDPRDKFDPVDEVTAAAGVKIAAPGLEEVLAGSPIR 781 (1049)
T ss_pred eeEEEEEEEcCEEecCCEEEEccCCCcceEEEEEecCcccccccccccccccccccccCCCceEEecCCccccCCCCeEE
Confidence 99999999999999999999887654 46677776431 223467888888777766 5899998999875
Q ss_pred cCCCCc-----------ccCCCCCCCceEEEEEEeCCCCCHHHHHHHHHHH
Q 007325 472 DADHPI-----------LLERMDFPDPVIKVAIEPKTKADIDKMANGLIKL 511 (608)
Q Consensus 472 ~~~~~~-----------~l~~~~~~~Pv~~~aiep~~~~d~~kL~~aL~~L 511 (608)
-..+.. .+....+....+.+-|.+...+..+.|..+|+++
T Consensus 782 v~~~e~~~~~~~~~~~~~~~~~~~~~~~~~vivKaDt~GSlEAl~~~L~~~ 832 (1049)
T PRK14845 782 IVPTKEKIEKAKEEVMKEVEEAKIETDKEGILIKADTLGSLEALANELRKA 832 (1049)
T ss_pred EeCCHHHHHHHHHHHHHHHhhhccCcceeeEEEEecccchHHHHHHHHHhC
Confidence 432110 0111122345678888899999999999998876
No 72
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=1.1e-23 Score=208.61 Aligned_cols=247 Identities=23% Similarity=0.297 Sum_probs=196.0
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEee---------cCeeEEEEe
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW---------NKHRINIID 161 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~---------~~~~i~liD 161 (608)
.|++++||.|+|||||..+|... + .+...|.++...+||+|.+.....+.. ...++.++|
T Consensus 8 ~N~GiLGHvDSGKTtLarals~~-~----------STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvD 76 (522)
T KOG0461|consen 8 LNLGILGHVDSGKTTLARALSEL-G----------STAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVD 76 (522)
T ss_pred eeeeeEeeccCchHHHHHHHHhh-c----------cchhhccCCcccccceeEeecceeeecccccccCccccceeEEEe
Confidence 69999999999999999999521 1 134568889999999999999888765 235689999
Q ss_pred CCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCCcHHHHHHHHHHhhCCccEE
Q 007325 162 TPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLV 241 (608)
Q Consensus 162 TPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~ 241 (608)
+|||......+..+....|..++|||+..|.+.|+.+.+-.....-...++|+||+|....+..
T Consensus 77 CPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~qr---------------- 140 (522)
T KOG0461|consen 77 CPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQR---------------- 140 (522)
T ss_pred CCCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccchhh----------------
Confidence 9999999999999999999999999999999999999988877777888999999997654310
Q ss_pred EeccCCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHHhcCCCCCHHHH
Q 007325 242 VQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETI 321 (608)
Q Consensus 242 ~~~pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l~~~~~~~~el 321 (608)
..-+|..+ ..+
T Consensus 141 ---------------------------------------------------~ski~k~~------------------kk~ 151 (522)
T KOG0461|consen 141 ---------------------------------------------------ASKIEKSA------------------KKV 151 (522)
T ss_pred ---------------------------------------------------hhHHHHHH------------------HHH
Confidence 00011100 011
Q ss_pred HHHHHhhcccCcceeeeeeccCCC----CChHHHHHHHHHhCCCCCCCCCCCCCCCCCccchhccccCCCCCeEEEEEEe
Q 007325 322 KKLIRKGTIAGSFVPVLCGSAFKN----KGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKI 397 (608)
Q Consensus 322 ~~~l~~~~~~~~~~Pv~~~SA~~~----~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~ 397 (608)
.+.|.. +.-+.-.|++.+||+.| .+|++|.+.|.+.+--|.. |+.+||.++|...
T Consensus 152 ~KtLe~-t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~R--------------------d~~gpflm~vDHC 210 (522)
T KOG0461|consen 152 RKTLES-TGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKR--------------------DEEGPFLMAVDHC 210 (522)
T ss_pred HHHHHh-cCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCc--------------------CCCCCeEEEeeee
Confidence 111111 11123368999999999 8999999999887766654 4579999999999
Q ss_pred eecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCeeecCCEEEE
Q 007325 398 MSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL 458 (608)
Q Consensus 398 ~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i 458 (608)
+.-++.|.+..+.|++|.++.|+.|-.+.-+...||+.+..+ +.+|.+|.+||-.++
T Consensus 211 F~IKGQGTV~TGTvl~G~~~ln~~iE~PAL~e~rkVKslqmf----~~~vtsa~~GdR~g~ 267 (522)
T KOG0461|consen 211 FAIKGQGTVLTGTVLRGVLRLNTEIEFPALNEKRKVKSLQMF----KQRVTSAAAGDRAGF 267 (522)
T ss_pred EEeccCceEEeeeEEEeEEecCcEEeecccchhhhhhhHHHH----hhhhhhhhcccceee
Confidence 999999999999999999999999998877777777776544 367999999999887
No 73
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.91 E-value=1.8e-23 Score=205.97 Aligned_cols=130 Identities=38% Similarity=0.505 Sum_probs=114.1
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeecc-CCccccchhhhhhcceeEeecEEEEeec-----CeeEEEEeCCC
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHE-GTATMDWMEQEQERGITITSAATTTYWN-----KHRINIIDTPG 164 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~-g~~~~d~~~~e~~~giTi~~~~~~~~~~-----~~~i~liDTPG 164 (608)
|||+|+||+|+|||||+++|++.++.....++... .+.++|..+.|+++|+|+......+.+. .+.+++|||||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence 69999999999999999999988887654433322 3456899999999999999998888764 37899999999
Q ss_pred CCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcC
Q 007325 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (608)
Q Consensus 165 ~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~ 220 (608)
|.+|...+..+++.+|++|+|+|+.++...+++.+++.+...++|+++|+||+|+.
T Consensus 81 ~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~ 136 (213)
T cd04167 81 HVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred CcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 99999999999999999999999999988888888888888889999999999986
No 74
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.90 E-value=2.5e-23 Score=203.41 Aligned_cols=116 Identities=26% Similarity=0.363 Sum_probs=100.9
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeec-----------------
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN----------------- 153 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~----------------- 153 (608)
+||+++||.|+|||||+++|. + ...|+.+.|.++|+|+..+...+.|.
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~---~------------~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALS---G------------VWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKE 65 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHh---C------------CCCCCCCeeEEcCCceeecccccccccccCcCCCCcccccccc
Confidence 489999999999999999994 1 33688889999999999998888774
Q ss_pred ----------C------eeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCC-CchhHHHHHHHHHhcCC-CEEEEEe
Q 007325 154 ----------K------HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG-VEPQSETVWRQADKYGV-PRICFVN 215 (608)
Q Consensus 154 ----------~------~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g-~~~~t~~~~~~~~~~~~-p~ivviN 215 (608)
+ ++++|||||||.+|...+..++..+|++++|+|+.++ ...++.+.+..+...++ |+++|+|
T Consensus 66 ~~~~~~~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvN 145 (203)
T cd01888 66 DSPECECPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQN 145 (203)
T ss_pred ccccccccccCCccccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEE
Confidence 3 7899999999999999999999999999999999984 67788888888777776 5788999
Q ss_pred CCCcCC
Q 007325 216 KMDRLG 221 (608)
Q Consensus 216 K~D~~~ 221 (608)
|+|+..
T Consensus 146 K~Dl~~ 151 (203)
T cd01888 146 KIDLVK 151 (203)
T ss_pred chhccC
Confidence 999864
No 75
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.90 E-value=7.3e-23 Score=198.28 Aligned_cols=119 Identities=26% Similarity=0.444 Sum_probs=104.5
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeec--------------CeeE
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--------------KHRI 157 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~--------------~~~i 157 (608)
||+++|++|+|||||+++|+... +...+|....|.++|+|+......+.+. ++.+
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~-----------~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIA-----------STAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQI 70 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhcc-----------chhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceE
Confidence 79999999999999999997331 2345688889999999999998888876 7899
Q ss_pred EEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCC
Q 007325 158 NIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (608)
Q Consensus 158 ~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~ 221 (608)
++||||||.+|......++..+|++++|+|+.++...++.+.+..+...++|+++|+||+|+..
T Consensus 71 ~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~ 134 (192)
T cd01889 71 TLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIP 134 (192)
T ss_pred EEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCC
Confidence 9999999999988888888999999999999999888888777777777899999999999864
No 76
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.88 E-value=4.8e-22 Score=196.59 Aligned_cols=141 Identities=20% Similarity=0.195 Sum_probs=112.4
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEE----------------------
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATT---------------------- 149 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~---------------------- 149 (608)
+|+++|+.++|||||+++|.. +.... +. ......+|.+..|.++|+|.......
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~--~~~~~-~~-~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 76 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQ--GELDN-GR-GKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDI 76 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHh--CCcCC-CC-CeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccc
Confidence 478999999999999999973 22111 11 01124578889999999987544322
Q ss_pred --EeecCeeEEEEeCCCCCCchHHHHHHHH--hcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCC-cH
Q 007325 150 --TYWNKHRINIIDTPGHVDFTLEVERALR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA-NF 224 (608)
Q Consensus 150 --~~~~~~~i~liDTPG~~df~~~~~~~l~--~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~-~~ 224 (608)
+...++.++++|||||.+|..++.+++. .+|++++|||+.++...++.+++..+...++|+++|+||+|+... .+
T Consensus 77 ~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~~~~~ 156 (224)
T cd04165 77 EICEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAPANIL 156 (224)
T ss_pred eeeeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccCHHHH
Confidence 2234678999999999999999999886 789999999999999999999999999999999999999998654 46
Q ss_pred HHHHHHHHHhhC
Q 007325 225 FRTRDMIVTNLG 236 (608)
Q Consensus 225 ~~~~~~i~~~l~ 236 (608)
.+.++++++.+.
T Consensus 157 ~~~~~~l~~~L~ 168 (224)
T cd04165 157 QETLKDLKRILK 168 (224)
T ss_pred HHHHHHHHHHhc
Confidence 777888877764
No 77
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.88 E-value=2.1e-21 Score=186.43 Aligned_cols=142 Identities=46% Similarity=0.689 Sum_probs=117.1
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchHH
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (608)
+|+++|.+|+|||||+|+|+.............. ..+++...+..+++|+......+.+.+..+++|||||+.+|...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEE--TFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceec--ccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHH
Confidence 5899999999999999999866554333222111 45677778889999999998899999999999999999999999
Q ss_pred HHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCC-CcHHHHHHHHHHhh
Q 007325 172 VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG-ANFFRTRDMIVTNL 235 (608)
Q Consensus 172 ~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~-~~~~~~~~~i~~~l 235 (608)
+..+++.+|++++|+|+.++...+..+.+..+...++|+++|+||+|+.. .++....+++++.+
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~ 143 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELL 143 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHH
Confidence 99999999999999999999888888888888888999999999999976 44455555555444
No 78
>PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H ....
Probab=99.86 E-value=6.9e-22 Score=160.35 Aligned_cols=75 Identities=53% Similarity=0.923 Sum_probs=70.7
Q ss_pred CCCceEEEEEEeCCCCCHHHHHHHHHHHHHhCCeeEEEEeCCCCcEEEEeeChhhHHHHHHHHHhhcCeEEEEec
Q 007325 484 FPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGA 558 (608)
Q Consensus 484 ~~~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~vl~g~GelHLev~~~rL~~~f~vev~~s~ 558 (608)
||+|+++++|+|.++.|.++|.+||++|++|||+|++.+|++|||++|+||||+||||+++||+++||++|++++
T Consensus 1 ~p~Pv~~~~i~p~~~~d~~kl~~aL~~l~~eDP~l~~~~d~et~e~~l~g~Gelhlev~~~~L~~~~~v~v~~~~ 75 (75)
T PF14492_consen 1 FPPPVLSVAIEPKNKEDEPKLSEALQKLSEEDPSLRVERDEETGELILSGMGELHLEVLLERLKRRFGVEVEFGK 75 (75)
T ss_dssp SSS-SEEEEEEESSHHHHHHHHHHHHHHHHH-TTSEEEEETTTSEEEEEESSHHHHHHHHHHHHHTTCEBEEEE-
T ss_pred CCCCeEEEEEEECCHhHHHHHHHHHHHHHhcCCeEEEEEcchhceEEEEECCHHHHHHHHHHHHHHHCCeeEecC
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999874
No 79
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=4.6e-21 Score=194.13 Aligned_cols=292 Identities=21% Similarity=0.253 Sum_probs=209.3
Q ss_pred CCCCCceeEEEEcCCCCchHHHHHHHHHhhCCcccce--e----ecc-------CCccccchhhhhhcceeEeecEEEEe
Q 007325 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIG--E----VHE-------GTATMDWMEQEQERGITITSAATTTY 151 (608)
Q Consensus 85 ~~~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g--~----~~~-------g~~~~d~~~~e~~~giTi~~~~~~~~ 151 (608)
.+++...|+.++||.++||||+-..+++.+|...... . ... -+..+|++.+|+++|-|+......+.
T Consensus 74 ~~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FE 153 (501)
T KOG0459|consen 74 EYPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFE 153 (501)
T ss_pred CCCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEE
Confidence 3456778999999999999999999988777654311 0 000 13578999999999999999999999
Q ss_pred ecCeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCC-----C--chhHHHHHHHHHhcCCCEE-EEEeCCCcCCCc
Q 007325 152 WNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG-----V--EPQSETVWRQADKYGVPRI-CFVNKMDRLGAN 223 (608)
Q Consensus 152 ~~~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g-----~--~~~t~~~~~~~~~~~~p~i-vviNK~D~~~~~ 223 (608)
....+++++|+|||..|...+..++..+|.+++|+.+..| . ..||+++...++..++..+ +++||||-+..+
T Consensus 154 te~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvn 233 (501)
T KOG0459|consen 154 TENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVN 233 (501)
T ss_pred ecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccC
Confidence 9999999999999999999999999999999999999743 2 3589999999998888775 558999977654
Q ss_pred HHH-HHHHHHHhhCCccEEEeccCCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhh
Q 007325 224 FFR-TRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVEL 302 (608)
Q Consensus 224 ~~~-~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~ 302 (608)
+.. ..+++.
T Consensus 234 Ws~eRy~E~~---------------------------------------------------------------------- 243 (501)
T KOG0459|consen 234 WSNERYEECK---------------------------------------------------------------------- 243 (501)
T ss_pred cchhhHHHHH----------------------------------------------------------------------
Confidence 211 111111
Q ss_pred cHHHHHHHhcCCCCCHHHHHHHHHhhcccC-cceeeeeeccCCCCChHHHHHHHHH--hCCCCCCCCCCCCCCCCCccch
Q 007325 303 DDEAMESYLEGNEPDEETIKKLIRKGTIAG-SFVPVLCGSAFKNKGVQPLLDAVVD--YLPSPLDLPAMKGTDPENPEAT 379 (608)
Q Consensus 303 dd~l~e~~l~~~~~~~~el~~~l~~~~~~~-~~~Pv~~~SA~~~~Gi~~Lld~i~~--~lP~p~~~~~~~~~~~~~~~~~ 379 (608)
+.+...|+..-... .-.-.+.+|.++|.++.+..+.++- ..|++.+.- + . .
T Consensus 244 ----------------~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~s~cpwy~gp~fl~~l-----d---~--l 297 (501)
T KOG0459|consen 244 ----------------EKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTDSVCPWYKGPIFLEYL-----D---E--L 297 (501)
T ss_pred ----------------HHHHHHHHHhcccCCCCceeeecccccccchhhcccccCCcccCCccceeh-----h---c--c
Confidence 11111122100000 0011334688899888876652221 122222100 0 0 0
Q ss_pred hccccCCCCCeEEEEEEeeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCeeecCCEEEE-
Q 007325 380 LERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL- 458 (608)
Q Consensus 380 ~~~~~~~~~p~~~~V~K~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i- 458 (608)
....-+.++|+.+.|..-+.| .|.+.+++|-||++++||.+...++++...|..|| .+-.+++++.|||.+-|
T Consensus 298 ~~~~R~~~GP~~~pI~~Kykd--mGTvv~GKvEsGsi~kg~~lvvMPnk~~veV~~I~----~ddvE~~~~~pGenvk~r 371 (501)
T KOG0459|consen 298 PHLERILNGPIRCPVANKYKD--MGTVVGGKVESGSIKKGQQLVVMPNKTNVEVLGIY----SDDVETDRVAPGENVKLR 371 (501)
T ss_pred CcccccCCCCEEeehhhhccc--cceEEEEEecccceecCCeEEEccCCcceEEEEEe----cccceeeeccCCcceEEE
Confidence 011224689999988766655 47999999999999999999999988888888877 33578999999999987
Q ss_pred -cCCC--cccccceeccCCCCcc
Q 007325 459 -AGLK--DTITGETLCDADHPIL 478 (608)
Q Consensus 459 -~gl~--~~~~GdtL~~~~~~~~ 478 (608)
.|++ ++..|-+||++.++..
T Consensus 372 lkgieeedi~~GfiL~~~~n~~~ 394 (501)
T KOG0459|consen 372 LKGIEEEDISPGFILCSPNNPCK 394 (501)
T ss_pred ecccchhhccCceEEecCCCccc
Confidence 5654 4889999999887653
No 80
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.85 E-value=3.2e-20 Score=173.94 Aligned_cols=115 Identities=27% Similarity=0.399 Sum_probs=95.1
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeec-CeeEEEEeCCCCCCchH
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-KHRINIIDTPGHVDFTL 170 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~-~~~i~liDTPG~~df~~ 170 (608)
+|+++|++|+|||||+++|. +.. .+..+.+..+++|+......+.+. +..+++|||||+.+|..
T Consensus 2 ~i~i~G~~~~GKssl~~~l~---~~~------------~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~ 66 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALT---GIE------------TDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIK 66 (164)
T ss_pred EEEEEecCCCCHHHHHHHHh---Ccc------------cccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHH
Confidence 79999999999999999995 210 122334556778888887777776 88999999999999988
Q ss_pred HHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCC-CEEEEEeCCCcCC
Q 007325 171 EVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGV-PRICFVNKMDRLG 221 (608)
Q Consensus 171 ~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~-p~ivviNK~D~~~ 221 (608)
.+..+++.+|++++|+|+.++...++.+.+..+...+. |+++|+||+|+..
T Consensus 67 ~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~ 118 (164)
T cd04171 67 NMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVD 118 (164)
T ss_pred HHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccC
Confidence 88889999999999999999888888877776666666 9999999999864
No 81
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.84 E-value=4.3e-20 Score=192.80 Aligned_cols=113 Identities=26% Similarity=0.339 Sum_probs=97.9
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCc--
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF-- 168 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df-- 168 (608)
+.|+|+|.||+|||||+|+|+ |....+ .+...|+|.+..+....|.++.+.+|||+|..+.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~---g~r~AI--------------V~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~ 66 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLT---GRRIAI--------------VSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDE 66 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHh---CCeeeE--------------eecCCCCccCCccceeEEcCceEEEEECCCCCcCCc
Confidence 689999999999999999996 322222 1223688999999999999999999999998753
Q ss_pred -------hHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcC
Q 007325 169 -------TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (608)
Q Consensus 169 -------~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~ 220 (608)
..++..++..||++|+|||+.+|+.++++++.+.++..++|+++|+||+|-.
T Consensus 67 ~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~ 125 (444)
T COG1160 67 DELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNL 125 (444)
T ss_pred hHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCc
Confidence 3446778999999999999999999999999999998889999999999965
No 82
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.84 E-value=2.2e-20 Score=213.40 Aligned_cols=239 Identities=19% Similarity=0.177 Sum_probs=176.3
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchH
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~ 170 (608)
.+|+++|++|+|||||+|+|. |...+.+++ .|+|++.....+.+++++++++||||+.+|..
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Lt---g~~~~vgn~---------------pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~ 65 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLT---GARQRVGNW---------------AGVTVERKEGQFSTTDHQVTLVDLPGTYSLTT 65 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHh---CCCCccCCC---------------CCceEeeEEEEEEcCceEEEEEECCCcccccc
Confidence 589999999999999999994 433333322 57788888888889999999999999988743
Q ss_pred H--------H--HHHH--HhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCC-CcHHHHHHHHHHhhCC
Q 007325 171 E--------V--ERAL--RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG-ANFFRTRDMIVTNLGA 237 (608)
Q Consensus 171 ~--------~--~~~l--~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~-~~~~~~~~~i~~~l~~ 237 (608)
. . ..++ ..+|++++|+|+++.. .....+.++.+.++|+++|+||+|+.. .......+++++.+|.
T Consensus 66 ~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~le--r~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~ 143 (772)
T PRK09554 66 ISSQTSLDEQIACHYILSGDADLLINVVDASNLE--RNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSARLGC 143 (772)
T ss_pred ccccccHHHHHHHHHHhccCCCEEEEEecCCcch--hhHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHHHHhCC
Confidence 1 1 1122 2679999999999743 344567788889999999999999864 4456667889999999
Q ss_pred ccEEEeccCCCC-CCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhh-cHHHHHHHhcCCC
Q 007325 238 KPLVVQLPVGAE-DNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVEL-DDEAMESYLEGNE 315 (608)
Q Consensus 238 ~~~~~~~pi~~~-~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~-dd~l~e~~l~~~~ 315 (608)
.+++++.+.+++ +++.+.++..... + .....++|+++.+..++.++.+.+.+++. ++.++.+|++++.
T Consensus 144 pVvpiSA~~g~GIdeL~~~I~~~~~~---------~-~~~~~~yp~~le~~I~~l~~~L~e~iae~~~RwLAiKlLEgD~ 213 (772)
T PRK09554 144 PVIPLVSTRGRGIEALKLAIDRHQAN---------E-NVELVHYPQPLLNEADSLAKVMPSDIPLQQRRWLGLQMLEGDI 213 (772)
T ss_pred CEEEEEeecCCCHHHHHHHHHHhhhc---------c-CCcccCCCHHHHHHHHHHHHHhhhhhccccchHHHHHHhcCch
Confidence 989998888776 4443333222110 0 11234577788888888888888877765 7889999999876
Q ss_pred CCHH------HHHHHHHhhcccCcceeeeeeccCCCCChHHHHHHHHHhC
Q 007325 316 PDEE------TIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYL 359 (608)
Q Consensus 316 ~~~~------el~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~l 359 (608)
++.+ ++.+.+++........|.+++++.+..+++.+++.++...
T Consensus 214 ~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~ia~~ry~~i~~l~~~~v~~~ 263 (772)
T PRK09554 214 YSRAYAGEASQHLDAALARLRNEMDDPALHIADARYQCIAAICDAVSNTL 263 (772)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5544 4445555555555557888899999999999999998654
No 83
>COG2262 HflX GTPases [General function prediction only]
Probab=99.84 E-value=6.3e-21 Score=196.03 Aligned_cols=180 Identities=18% Similarity=0.220 Sum_probs=129.8
Q ss_pred cccccccccccCCC------CCCCccCCCCCCCCCccccccCc---------------ccccCCCCCCCCCcccccchhH
Q 007325 15 VCNFAMNGSQRRPV------PVPVTVPRSLGLLPSPASHFLGS---------------VCVFSPRSTSKLSPRSRRQFSV 73 (608)
Q Consensus 15 ~~~~~~~~~~~~~~------~~~~~~~r~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~ 73 (608)
+--||.||.|++++ ++.|.+||+.+ ....+++..+. +. +..+.. ..++++..
T Consensus 103 LdIFa~RA~S~EgkLQVeLAqL~Y~lpRl~~-~~~~l~~~GggiG~rGpGE~~lE~drR~---ir~rI~---~i~~eLe~ 175 (411)
T COG2262 103 LDIFAQRARSREGKLQVELAQLRYELPRLVG-SGSHLSRLGGGIGFRGPGETQLETDRRR---IRRRIA---KLKRELEN 175 (411)
T ss_pred HHHHHHHhccchhhhhhhHHhhhhhhhHhHh-hhhhcccccCCCCCCCCCchHHHHHHHH---HHHHHH---HHHHHHHH
Confidence 34499999999999 99999999988 55556644421 11 222222 44577788
Q ss_pred HHHhhhhhhccCCCCCceeEEEEcCCCCchHHHHHHHHHhhCCccc-ceeeccCCccccchhhhhhcceeEeecEEEEee
Q 007325 74 FAMAAEESKRVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYK-IGEVHEGTATMDWMEQEQERGITITSAATTTYW 152 (608)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~-~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~ 152 (608)
....++..++.+..+.++.|+++|++|||||||+|+|. +.... ...+ -.|.++....+.+
T Consensus 176 v~~~R~~~R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT---~~~~~~~d~L----------------FATLdpttR~~~l 236 (411)
T COG2262 176 VEKAREPRRKKRSRSGIPLVALVGYTNAGKSTLFNALT---GADVYVADQL----------------FATLDPTTRRIEL 236 (411)
T ss_pred HHHHHHHHhhhhcccCCCeEEEEeeccccHHHHHHHHh---ccCeeccccc----------------cccccCceeEEEe
Confidence 88888888888888899999999999999999999995 22111 1122 2388888888888
Q ss_pred c-CeeEEEEeCCCCCC---------chHHHHHHHHhcCeEEEEEcCCCCC-chhHH---HHHHHHHhcCCCEEEEEeCCC
Q 007325 153 N-KHRINIIDTPGHVD---------FTLEVERALRVLDGAICLFDSVAGV-EPQSE---TVWRQADKYGVPRICFVNKMD 218 (608)
Q Consensus 153 ~-~~~i~liDTPG~~d---------f~~~~~~~l~~~D~~i~VvDa~~g~-~~~t~---~~~~~~~~~~~p~ivviNK~D 218 (608)
. +..+.+.||-|+++ |.+.. .....+|.+++|||+++.- ..+.. .++..+....+|+|+|+||+|
T Consensus 237 ~~g~~vlLtDTVGFI~~LP~~LV~AFksTL-EE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD 315 (411)
T COG2262 237 GDGRKVLLTDTVGFIRDLPHPLVEAFKSTL-EEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKID 315 (411)
T ss_pred CCCceEEEecCccCcccCChHHHHHHHHHH-HHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEeccc
Confidence 6 68999999999987 44433 3445669999999999763 22223 334444446789999999999
Q ss_pred cCC
Q 007325 219 RLG 221 (608)
Q Consensus 219 ~~~ 221 (608)
+..
T Consensus 316 ~~~ 318 (411)
T COG2262 316 LLE 318 (411)
T ss_pred ccC
Confidence 764
No 84
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.83 E-value=6.2e-20 Score=169.52 Aligned_cols=109 Identities=22% Similarity=0.332 Sum_probs=84.8
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCch--
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT-- 169 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~-- 169 (608)
+|+++|.+|+|||||+|+|+ |...+.+++ +|.|+......+.+.+..+.++||||..++.
T Consensus 2 ~ialvG~PNvGKStLfN~Lt---g~~~~v~n~---------------pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~ 63 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALT---GAKQKVGNW---------------PGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSK 63 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHH---TTSEEEEES---------------TTSSSEEEEEEEEETTEEEEEEE----SSSSSS
T ss_pred EEEEECCCCCCHHHHHHHHH---CCCceecCC---------------CCCCeeeeeEEEEecCceEEEEECCCcccCCCC
Confidence 69999999999999999994 555555553 5779999999999999999999999975542
Q ss_pred --HH--HHHHH--HhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcC
Q 007325 170 --LE--VERAL--RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (608)
Q Consensus 170 --~~--~~~~l--~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~ 220 (608)
.+ ...++ ...|++|+|+||++ ..+...+..++.+.++|+++|+||+|+.
T Consensus 64 s~ee~v~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P~vvvlN~~D~a 118 (156)
T PF02421_consen 64 SEEERVARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLELGIPVVVVLNKMDEA 118 (156)
T ss_dssp SHHHHHHHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSSEEEEEETHHHH
T ss_pred CcHHHHHHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEEeCHHHH
Confidence 11 22233 46799999999997 4566778888999999999999999964
No 85
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=1.9e-19 Score=193.12 Aligned_cols=240 Identities=25% Similarity=0.253 Sum_probs=159.2
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEee----------------
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW---------------- 152 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~---------------- 152 (608)
+.|.+||+||+++|||-|++.+...+-.-.. ..|||.......+..
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqege------------------aggitqqIgAt~fp~~ni~e~tk~~~~~~K~ 535 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGE------------------AGGITQQIGATYFPAENIREKTKELKKDAKK 535 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhcccccccc------------------ccceeeeccccccchHHHHHHHHHHHhhhhh
Confidence 5689999999999999999999522111111 124455444444332
Q ss_pred --cCeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCCcHHHHHHH
Q 007325 153 --NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDM 230 (608)
Q Consensus 153 --~~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~ 230 (608)
+--.+.+||||||..|.....++...||.+|+|||..+|+.+||.+.++.++..+.|+||++||+|++-
T Consensus 536 ~~kvPg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLY--------- 606 (1064)
T KOG1144|consen 536 RLKVPGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLY--------- 606 (1064)
T ss_pred hcCCCeeEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhc---------
Confidence 223488999999999999999999999999999999999999999999999999999999999999851
Q ss_pred HHHhhCCccEEEeccCCCCCCeeeEEecccceeEEecCcCCCceeee-ecCcHhHHHHH----HHHHHHHHHHHHhhcHH
Q 007325 231 IVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAY-EDIPANLQKMA----QEYRSQMIETIVELDDE 305 (608)
Q Consensus 231 i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~----~~~r~~l~e~~~~~dd~ 305 (608)
||.... .+|-..+...- .++...+-.-+.+
T Consensus 607 -----------------------------------------gwk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~e---- 641 (1064)
T KOG1144|consen 607 -----------------------------------------GWKSCPNAPIVEALKKQKKDVQNEFKERLNNIIVE---- 641 (1064)
T ss_pred -----------------------------------------ccccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHH----
Confidence 221110 11111111111 1111111111111
Q ss_pred HHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeeccCCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccchhccccC
Q 007325 306 AMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAAS 385 (608)
Q Consensus 306 l~e~~l~~~~~~~~el~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~ 385 (608)
+.|+-|+ . +|+ -+-...+.++-++++||.+|.||..||-.|+++.-.-.. ....
T Consensus 642 faEQgLN-----~-~Ly---ykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~-----------------~kl~ 695 (1064)
T KOG1144|consen 642 FAEQGLN-----A-ELY---YKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMV-----------------EKLA 695 (1064)
T ss_pred HHHcccc-----h-hhe---eecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHH-----------------HHHh
Confidence 1111111 0 110 111234677888999999999999999999987432211 0011
Q ss_pred CCCCeEEEEEEeeecCCCceEEEEEEecceeCCCCEEEeCC
Q 007325 386 DDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNAN 426 (608)
Q Consensus 386 ~~~p~~~~V~K~~~d~~~G~la~~RV~sG~l~~g~~v~~~~ 426 (608)
.-..+.+.|..+-.-++.|.-.-+-+..|.|+.||.|.+..
T Consensus 696 y~~ev~cTVlEVKvieG~GtTIDViLvNG~L~eGD~IvvcG 736 (1064)
T KOG1144|consen 696 YVDEVQCTVLEVKVIEGHGTTIDVILVNGELHEGDQIVVCG 736 (1064)
T ss_pred hhhheeeEEEEEEeecCCCceEEEEEEcceeccCCEEEEcC
Confidence 22445677777777788898888888899999999998653
No 86
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.82 E-value=3.8e-19 Score=167.58 Aligned_cols=115 Identities=32% Similarity=0.358 Sum_probs=93.1
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeec---CeeEEEEeCCCCCC
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN---KHRINIIDTPGHVD 167 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~---~~~i~liDTPG~~d 167 (608)
|+|+|+|++|+|||||+++|..... . ....+++|.......+.+. +..+++|||||+.+
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~--~----------------~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~ 62 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNV--A----------------AGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEA 62 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhccc--c----------------cccCCCeEEeeccEEEecccCCcceEEEEeCCCcHH
Confidence 4799999999999999999962211 0 0112345666655566654 68899999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCCc
Q 007325 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGAN 223 (608)
Q Consensus 168 f~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~ 223 (608)
|...+..++..+|++++|+|++++...++.+.+..+...++|+++|+||+|+...+
T Consensus 63 ~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~ 118 (168)
T cd01887 63 FTNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNAN 118 (168)
T ss_pred HHHHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceeccccc
Confidence 98888889999999999999999888888888888888999999999999986543
No 87
>PRK11058 GTPase HflX; Provisional
Probab=99.82 E-value=2.7e-20 Score=200.12 Aligned_cols=186 Identities=14% Similarity=0.101 Sum_probs=117.0
Q ss_pred cccccccccccCCC------CCCCccCCCCCCCCCccccccCcccccCCCCCCCC-----------CcccccchhHHHHh
Q 007325 15 VCNFAMNGSQRRPV------PVPVTVPRSLGLLPSPASHFLGSVCVFSPRSTSKL-----------SPRSRRQFSVFAMA 77 (608)
Q Consensus 15 ~~~~~~~~~~~~~~------~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~ 77 (608)
+--||.||.|++++ +++|.+||+.+ ....+++..|..- + .-++... ....+.++......
T Consensus 108 l~IF~~rA~t~e~klqvelA~l~y~~prl~~-~~~~l~~~~gg~g-~-~g~ge~~~e~d~r~i~~ri~~l~~~L~~~~~~ 184 (426)
T PRK11058 108 LDIFAQRARTHEGKLQVELAQLRHLATRLVR-GWTHLERQKGGIG-L-RGPGETQLETDRRLLRNRIVQILSRLERVEKQ 184 (426)
T ss_pred HHHHHHhcCChHHHHHHHHHhhhhhhhhhhc-cccchhhhcCCCC-C-CCCChhHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34599999999999 99999999988 5667887765322 0 1111110 00111222222222
Q ss_pred hhhhhccCCCCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCe-e
Q 007325 78 AEESKRVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKH-R 156 (608)
Q Consensus 78 ~~~~~~~~~~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~-~ 156 (608)
+...+.......++.|+|+|.+|+|||||+|+|+ +..... ....+.|++.....+.+.+. .
T Consensus 185 r~~~r~~r~~~~~p~ValVG~~NaGKSSLlN~Lt---~~~~~v---------------~~~~~tTld~~~~~i~l~~~~~ 246 (426)
T PRK11058 185 REQGRRARIKADVPTVSLVGYTNAGKSTLFNRIT---EARVYA---------------ADQLFATLDPTLRRIDVADVGE 246 (426)
T ss_pred HHHHHHHhhhcCCCEEEEECCCCCCHHHHHHHHh---CCceee---------------ccCCCCCcCCceEEEEeCCCCe
Confidence 2222222223345789999999999999999995 211110 11123466666666666554 8
Q ss_pred EEEEeCCCCCCc--------hHHHHHHHHhcCeEEEEEcCCCCCchhHH----HHHHHHHhcCCCEEEEEeCCCcCC
Q 007325 157 INIIDTPGHVDF--------TLEVERALRVLDGAICLFDSVAGVEPQSE----TVWRQADKYGVPRICFVNKMDRLG 221 (608)
Q Consensus 157 i~liDTPG~~df--------~~~~~~~l~~~D~~i~VvDa~~g~~~~t~----~~~~~~~~~~~p~ivviNK~D~~~ 221 (608)
+.+|||||+.+. ...+...++.+|++|+|+|+++....... .++..+...++|+++|+||+|+..
T Consensus 247 ~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~ 323 (426)
T PRK11058 247 TVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLD 323 (426)
T ss_pred EEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCC
Confidence 999999998542 11234456889999999999986543333 233444445799999999999853
No 88
>COG1159 Era GTPase [General function prediction only]
Probab=99.82 E-value=3.1e-19 Score=177.04 Aligned_cols=116 Identities=23% Similarity=0.309 Sum_probs=93.1
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCC--
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD-- 167 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d-- 167 (608)
.--|||+|.||+|||||+|+|+ |....+.+ ....+|.....+-++.++.++.++||||...
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~---G~KisIvS--------------~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk 68 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALV---GQKISIVS--------------PKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPK 68 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHh---cCceEeec--------------CCcchhhhheeEEEEcCCceEEEEeCCCCCCcc
Confidence 3479999999999999999997 33222222 1233466666666677899999999999654
Q ss_pred ------chHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCC
Q 007325 168 ------FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (608)
Q Consensus 168 ------f~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (608)
....+..++..+|.+++|||+.+++...++.+++.+...+.|+++++||+|+...
T Consensus 69 ~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~ 129 (298)
T COG1159 69 HALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKP 129 (298)
T ss_pred hHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCc
Confidence 3556677888999999999999999999999999998888999999999998654
No 89
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.81 E-value=4.1e-20 Score=194.40 Aligned_cols=186 Identities=15% Similarity=0.167 Sum_probs=117.1
Q ss_pred cccccccccccCCC------CCCCccCCCCCCCCCccccccCcccccCCCCCC--CC--------CcccccchhHHHHhh
Q 007325 15 VCNFAMNGSQRRPV------PVPVTVPRSLGLLPSPASHFLGSVCVFSPRSTS--KL--------SPRSRRQFSVFAMAA 78 (608)
Q Consensus 15 ~~~~~~~~~~~~~~------~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~--------~~~~~~~~~~~~~~~ 78 (608)
+-=||.||.|++++ ++.|.+||+.+.... ++++.+.--. .-+.-. .. ....+.++......+
T Consensus 100 l~iF~~ra~t~e~klqv~la~l~~~l~r~~~~~~~-l~~~~~~i~~-~g~gE~~~~~~~~~i~~ri~~l~~~L~~~~~~~ 177 (351)
T TIGR03156 100 LDIFAQRARTHEGKLQVELAQLKYLLPRLVGGWTH-LSRQGGGIGT-RGPGETQLETDRRLIRERIAQLKKELEKVEKQR 177 (351)
T ss_pred HHHHHHhccChHHHHHHHHHhccchhhhhhhhHHH-HHhhcCCCCC-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34599999999999 999999999874544 6666543221 111110 00 011123333343444
Q ss_pred hhhhccCCCCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEee-cCeeE
Q 007325 79 EESKRVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRI 157 (608)
Q Consensus 79 ~~~~~~~~~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~i 157 (608)
...+..+..+..+.|+|+|++|+|||||+|+|+... . .. +...+.|++.....+.+ ++..+
T Consensus 178 ~~~r~~r~~~~~~~ValvG~~NvGKSSLln~L~~~~---~-~v--------------~~~~~tT~d~~~~~i~~~~~~~i 239 (351)
T TIGR03156 178 ERQRRRRKRADVPTVALVGYTNAGKSTLFNALTGAD---V-YA--------------ADQLFATLDPTTRRLDLPDGGEV 239 (351)
T ss_pred HHHHhhhcccCCcEEEEECCCCCCHHHHHHHHhCCc---e-ee--------------ccCCccccCCEEEEEEeCCCceE
Confidence 333333433456899999999999999999996211 0 00 01123466666666666 56899
Q ss_pred EEEeCCCCCC---------chHHHHHHHHhcCeEEEEEcCCCCCchhHH----HHHHHHHhcCCCEEEEEeCCCcCC
Q 007325 158 NIIDTPGHVD---------FTLEVERALRVLDGAICLFDSVAGVEPQSE----TVWRQADKYGVPRICFVNKMDRLG 221 (608)
Q Consensus 158 ~liDTPG~~d---------f~~~~~~~l~~~D~~i~VvDa~~g~~~~t~----~~~~~~~~~~~p~ivviNK~D~~~ 221 (608)
.||||||+.+ |.. +...+..+|++|+|+|+++....... .+++.+...++|+++|+||+|+..
T Consensus 240 ~l~DT~G~~~~l~~~lie~f~~-tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~ 315 (351)
T TIGR03156 240 LLTDTVGFIRDLPHELVAAFRA-TLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLD 315 (351)
T ss_pred EEEecCcccccCCHHHHHHHHH-HHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCC
Confidence 9999999832 222 33457889999999999976544333 223333334789999999999853
No 90
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=99.80 E-value=2.5e-19 Score=149.47 Aligned_cols=85 Identities=31% Similarity=0.420 Sum_probs=80.6
Q ss_pred CCCeEEEEEEeeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCeeecCCEEEEcCCCcccc
Q 007325 387 DEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTIT 466 (608)
Q Consensus 387 ~~p~~~~V~K~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~ 466 (608)
++||+++|||+.+|++.|+++|+|||||+|++||.|++.. ++.+++++|+.++|.++.++++|.|||||++.|++++.+
T Consensus 1 ~~p~~~~Vfkv~~d~~~G~la~~RV~sG~l~~g~~v~~~~-~~~~~v~~l~~~~g~~~~~v~~~~aGdI~ai~gl~~~~~ 79 (85)
T cd03690 1 ESELSGTVFKIERDDKGERLAYLRLYSGTLRLRDSVRVNR-EEKIKITELRVFNNGEVVTADTVTAGDIAILTGLKGLRV 79 (85)
T ss_pred CCCcEEEEEEeEECCCCCeEEEEEEccCEEcCCCEEEeCC-CcEEEeceeEEEeCCCeEECcEECCCCEEEEECCCCCcC
Confidence 3799999999999999999999999999999999999877 667899999999999999999999999999999999999
Q ss_pred cceecc
Q 007325 467 GETLCD 472 (608)
Q Consensus 467 GdtL~~ 472 (608)
||||++
T Consensus 80 Gdtl~~ 85 (85)
T cd03690 80 GDVLGD 85 (85)
T ss_pred ccccCC
Confidence 999964
No 91
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=2.3e-18 Score=172.57 Aligned_cols=285 Identities=19% Similarity=0.250 Sum_probs=199.8
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCC----ccccchhhhhhcceeEeecEEEEee--------------
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGT----ATMDWMEQEQERGITITSAATTTYW-------------- 152 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~----~~~d~~~~e~~~giTi~~~~~~~~~-------------- 152 (608)
..+|++|..++|||||+..|. .|.++.|. -.+-.++.|...|-|...+.-.+-+
T Consensus 168 vRvAVlGg~D~GKSTLlGVLT--------QgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~t 239 (591)
T KOG1143|consen 168 VRVAVLGGCDVGKSTLLGVLT--------QGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMT 239 (591)
T ss_pred EEEEEecCcccCcceeeeeee--------cccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhccc
Confidence 578999999999999999885 12333332 1234456666666655444333322
Q ss_pred -------cCeeEEEEeCCCCCCchHHHHHHHHhc--CeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCC-
Q 007325 153 -------NKHRINIIDTPGHVDFTLEVERALRVL--DGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA- 222 (608)
Q Consensus 153 -------~~~~i~liDTPG~~df~~~~~~~l~~~--D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~- 222 (608)
..+.+++||..||..|...+..++... |.|++||.|..|+...|++++..+...++|++++++|||+...
T Consensus 240 aEEi~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl~~~~ 319 (591)
T KOG1143|consen 240 AEEIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMDLVDRQ 319 (591)
T ss_pred HHHHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEeeccccch
Confidence 245689999999999999988887543 9999999999999999999999999999999999999999764
Q ss_pred cHHHHHHHHHHhhCC---ccEEEeccCCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHH
Q 007325 223 NFFRTRDMIVTNLGA---KPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETI 299 (608)
Q Consensus 223 ~~~~~~~~i~~~l~~---~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~ 299 (608)
-+++++.++.+.+.. ..+|..+
T Consensus 320 ~~~~tv~~l~nll~~~Gc~kvp~~V------------------------------------------------------- 344 (591)
T KOG1143|consen 320 GLKKTVKDLSNLLAKAGCTKVPKRV------------------------------------------------------- 344 (591)
T ss_pred hHHHHHHHHHHHHhhcCccccceEe-------------------------------------------------------
Confidence 478888888876632 1111100
Q ss_pred HhhcHHHHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeeccCCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccch
Q 007325 300 VELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEAT 379 (608)
Q Consensus 300 ~~~dd~l~e~~l~~~~~~~~el~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~ 379 (608)
-++++-..+-++ ...++++|+|++|..+|.|++-|-. +...||+-..+. +.
T Consensus 345 ----------------t~~ddAv~Aaq~-~~s~nivPif~vSsVsGegl~ll~~-fLn~Lsp~~~~~-----------e~ 395 (591)
T KOG1143|consen 345 ----------------TTKDDAVKAAQE-LCSGNIVPIFAVSSVSGEGLRLLRT-FLNCLSPAGTAE-----------ER 395 (591)
T ss_pred ----------------echHHHHHHHHH-hccCCceeEEEEeecCccchhHHHH-HHhhcCCcCChH-----------HH
Confidence 011111122222 4567899999999999999875444 445554332211 00
Q ss_pred hccccCCCCCeEEEEEEeeecCCCceEEEEEEecceeCCCCEEEeCCC--Cc--eeecceEEEeecCceeecCeeecCCE
Q 007325 380 LERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANK--GK--KERIGRLLEMHANSREDVKVALAGDI 455 (608)
Q Consensus 380 ~~~~~~~~~p~~~~V~K~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~--~~--~~ki~~i~~~~g~~~~~v~~a~aGdI 455 (608)
.. -...|.-.+|-.++..|.+|.+.-+-+-+|.++.|+.+.+.+. |. +.+++.|. +.+.++..+.||+-
T Consensus 396 ~~---L~q~~~eFqvdEiy~Vp~VG~VVGG~Ls~G~l~Eg~~~~vGP~~DG~F~~itV~sI~----Rnr~acrvvraGqa 468 (591)
T KOG1143|consen 396 IQ---LVQLPAEFQVDEIYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTFEKITVGSIR----RNRQACRVVRAGQA 468 (591)
T ss_pred HH---HhcCcceeeHhHeecCCcccccccceeeeceeccCceeEeecCCCCceeEEEeeeee----ccccceeeecCccc
Confidence 00 1245667788899999999999999999999999999998754 33 45666665 55677888999998
Q ss_pred EEEc-CCCc---ccccceeccCC
Q 007325 456 IALA-GLKD---TITGETLCDAD 474 (608)
Q Consensus 456 v~i~-gl~~---~~~GdtL~~~~ 474 (608)
..+. +..| ++.|.+|.+..
T Consensus 469 Aslsl~d~D~~~LR~GMVl~~~~ 491 (591)
T KOG1143|consen 469 ASLSLNDPDGVSLRRGMVLAEID 491 (591)
T ss_pred eeeeccCCCccchhcceEEeecC
Confidence 8773 2112 56777776543
No 92
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.78 E-value=4.2e-18 Score=173.85 Aligned_cols=111 Identities=21% Similarity=0.172 Sum_probs=79.3
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCc---
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF--- 168 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df--- 168 (608)
.|+++|++|+|||||+|+|+... ....+ ...++|..........++.++.||||||+.+.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~---~~~vs--------------~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~ 64 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQK---ISITS--------------PKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHS 64 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc---EeecC--------------CCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcch
Confidence 58999999999999999996221 11111 11233443333333446678999999998653
Q ss_pred -----hHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcC
Q 007325 169 -----TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (608)
Q Consensus 169 -----~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~ 220 (608)
...+..++..+|++++|+|+++..... ..++..+...++|+++|+||+|+.
T Consensus 65 l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~ 120 (270)
T TIGR00436 65 LNRLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNK 120 (270)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCC
Confidence 223456788999999999999865544 566677777899999999999985
No 93
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.78 E-value=3.9e-18 Score=160.71 Aligned_cols=117 Identities=21% Similarity=0.176 Sum_probs=83.1
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchHH
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (608)
||+++|++|+|||||+++|....... .+.+ ..+...|+......+.+++..+.+|||||+.+|...
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~-------~~~~-------~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 66 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKY-------KGLP-------PSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSL 66 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccc-------cCCc-------ccccCCccccceEEEEECCEEEEEEECCCChhhHHH
Confidence 68999999999999999996432210 0000 001123555555667778899999999999999999
Q ss_pred HHHHHHhcCeEEEEEcCCCCCch-hHHHHHHHHH----hcCCCEEEEEeCCCcCCC
Q 007325 172 VERALRVLDGAICLFDSVAGVEP-QSETVWRQAD----KYGVPRICFVNKMDRLGA 222 (608)
Q Consensus 172 ~~~~l~~~D~~i~VvDa~~g~~~-~t~~~~~~~~----~~~~p~ivviNK~D~~~~ 222 (608)
+...++.+|++++|+|+.+.-.. .....+..+. ..++|+++++||+|+...
T Consensus 67 ~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~ 122 (167)
T cd04160 67 WDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA 122 (167)
T ss_pred HHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC
Confidence 99999999999999999864211 1222222222 257999999999998643
No 94
>PRK15494 era GTPase Era; Provisional
Probab=99.78 E-value=6.4e-18 Score=177.55 Aligned_cols=116 Identities=16% Similarity=0.189 Sum_probs=86.4
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCc
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 168 (608)
+..+|+++|++|+|||||+|+|+.... .. .....+.|.......+.+++.+++||||||+.+.
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~---~i--------------vs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~ 113 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKL---SI--------------VTPKVQTTRSIITGIITLKDTQVILYDTPGIFEP 113 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCce---ee--------------ccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCC
Confidence 456999999999999999999972211 00 0012234555555566778899999999998542
Q ss_pred --------hHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCC
Q 007325 169 --------TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (608)
Q Consensus 169 --------~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~ 221 (608)
......+++.+|++|+|+|+.++.......++..+...+.|.++|+||+|+..
T Consensus 114 ~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~ 174 (339)
T PRK15494 114 KGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIES 174 (339)
T ss_pred cccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCcc
Confidence 22233457899999999999988877777777777778899999999999853
No 95
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.78 E-value=5.6e-18 Score=177.07 Aligned_cols=117 Identities=21% Similarity=0.264 Sum_probs=99.8
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCC-
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD- 167 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d- 167 (608)
....|||+|.||+|||||+|+|+ |.-+.+. ....|+|+++....++|++..+.+|||.|...
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~il---geeR~Iv--------------~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk 239 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAIL---GEERVIV--------------SDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRK 239 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhc---cCceEEe--------------cCCCCccccceeeeEEECCeEEEEEECCCCCcc
Confidence 46799999999999999999997 3222221 22357799999999999999999999999643
Q ss_pred ---------c-hHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCC
Q 007325 168 ---------F-TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (608)
Q Consensus 168 ---------f-~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (608)
| ......++..+|.+++|+||.+|+..|+..+...+.+.+.++++|+||+|+...
T Consensus 240 ~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~ 304 (444)
T COG1160 240 GKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEE 304 (444)
T ss_pred cccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccCCc
Confidence 2 345678899999999999999999999999999999999999999999998653
No 96
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=99.77 E-value=1.8e-18 Score=143.94 Aligned_cols=83 Identities=51% Similarity=0.773 Sum_probs=79.4
Q ss_pred eEEEEEEeeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCeeecCCEEEEcCCCcccccce
Q 007325 390 FAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGET 469 (608)
Q Consensus 390 ~~~~V~K~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdt 469 (608)
|+++|||+++|++.|+++|+|||+|+|++||.|++...++.+++++|+.++|.++.++++|.||||++|.|++++.+|||
T Consensus 1 ~~a~VfK~~~d~~~g~i~~~Ri~sGtl~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~Gdt 80 (83)
T cd04092 1 LCALAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNTGKKERISRLLQPFADQYQEIPSLSAGNIGVITGLKQTRTGDT 80 (83)
T ss_pred CEEEEEecccCCCCCeEEEEEEecCEECCCCEEEECCCCCEEEeeEEEEEECCCceECCeeCCCCEEEEECCCCcccCCE
Confidence 57899999999999999999999999999999999888888999999999999999999999999999999999999999
Q ss_pred ecc
Q 007325 470 LCD 472 (608)
Q Consensus 470 L~~ 472 (608)
||.
T Consensus 81 l~~ 83 (83)
T cd04092 81 LVT 83 (83)
T ss_pred EeC
Confidence 973
No 97
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.77 E-value=8.3e-18 Score=156.18 Aligned_cols=112 Identities=25% Similarity=0.305 Sum_probs=88.0
Q ss_pred EEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchH---
Q 007325 94 GIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL--- 170 (608)
Q Consensus 94 ~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~--- 170 (608)
+++|++|+|||||+++|+.... .. .+...++|.........+.++.+.+|||||+.++..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~---~~--------------~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~ 63 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRD---AI--------------VEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGIS 63 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcE---Ee--------------ecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHH
Confidence 5899999999999999962210 00 111234566666667777889999999999998644
Q ss_pred -----HHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCC
Q 007325 171 -----EVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (608)
Q Consensus 171 -----~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (608)
+....++.+|++++|+|+.++.......+++.+...++|+++|+||+|+...
T Consensus 64 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 120 (157)
T cd01894 64 KEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKE 120 (157)
T ss_pred HHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCCh
Confidence 4566788999999999999888777777888888889999999999998653
No 98
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.76 E-value=1.7e-17 Score=181.02 Aligned_cols=115 Identities=21% Similarity=0.200 Sum_probs=94.3
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCc
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 168 (608)
...+|+++|++|+|||||+|+|+..... .....+|+|.+.....+.+++..+.+|||||+.+.
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~-----------------~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~ 234 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERV-----------------IVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRK 234 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCce-----------------eecCCCCceEEEEEEEEEECCeeEEEEECCCCCCC
Confidence 4579999999999999999999732211 11223577888877778888999999999997542
Q ss_pred h-----------HHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcC
Q 007325 169 T-----------LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (608)
Q Consensus 169 ~-----------~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~ 220 (608)
. ....++++.+|++|+|+|+.++...++..++.++...++|+++|+||+|+.
T Consensus 235 ~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~ 297 (435)
T PRK00093 235 GKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLV 297 (435)
T ss_pred cchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCC
Confidence 1 224567889999999999999999999999999999999999999999986
No 99
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.76 E-value=1.4e-17 Score=181.59 Aligned_cols=115 Identities=21% Similarity=0.162 Sum_probs=93.7
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCc
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 168 (608)
...+|+++|++|+|||||+|+|+..... ......|+|.+.....+.+++..+.+|||||+.++
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~-----------------~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~ 233 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERV-----------------IVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRK 233 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCee-----------------ecCCCCCceECcEeEEEEECCcEEEEEECCCcccc
Confidence 4568999999999999999999732111 01123567887777778888889999999998654
Q ss_pred hH-----------HHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcC
Q 007325 169 TL-----------EVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (608)
Q Consensus 169 ~~-----------~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~ 220 (608)
.. ....+++.+|++|+|+|+.++...++..+++.+...++|+++|+||+|+.
T Consensus 234 ~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 234 GKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLV 296 (429)
T ss_pred ccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccC
Confidence 21 23457889999999999999999999999999999999999999999986
No 100
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.76 E-value=1.8e-17 Score=157.52 Aligned_cols=113 Identities=21% Similarity=0.195 Sum_probs=79.3
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCc
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 168 (608)
...+|+++|++|+|||||+++|... .. ..+ +. |+......+.+++..+++|||||+..|
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~--~~---~~~------------~~----t~g~~~~~~~~~~~~l~l~D~~G~~~~ 71 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGE--DI---DTI------------SP----TLGFQIKTLEYEGYKLNIWDVGGQKTL 71 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccC--CC---CCc------------CC----ccccceEEEEECCEEEEEEECCCCHHH
Confidence 3468999999999999999999622 00 000 01 222223344556789999999999999
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCCCchh-HHHHHHHH----HhcCCCEEEEEeCCCcCCC
Q 007325 169 TLEVERALRVLDGAICLFDSVAGVEPQ-SETVWRQA----DKYGVPRICFVNKMDRLGA 222 (608)
Q Consensus 169 ~~~~~~~l~~~D~~i~VvDa~~g~~~~-t~~~~~~~----~~~~~p~ivviNK~D~~~~ 222 (608)
...+..+++.+|++++|+|+++..... ....+..+ ...++|+++|+||+|+...
T Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 130 (173)
T cd04154 72 RPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGA 130 (173)
T ss_pred HHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccC
Confidence 888888999999999999998752211 11122222 2357899999999998643
No 101
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=99.75 E-value=6.2e-18 Score=169.55 Aligned_cols=283 Identities=21% Similarity=0.273 Sum_probs=200.7
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCC----ccccchhhhhhcceeEeecE-------------------
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGT----ATMDWMEQEQERGITITSAA------------------- 147 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~----~~~d~~~~e~~~giTi~~~~------------------- 147 (608)
..|++||..++|||||+..|.+ |.++.|. +-+-.++.|.+.|-|.....
T Consensus 134 ~RVAVVGNVDAGKSTLLGVLTH--------geLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg 205 (641)
T KOG0463|consen 134 ARVAVVGNVDAGKSTLLGVLTH--------GELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHG 205 (641)
T ss_pred EEEEEEecccCCcceeEeeeee--------cccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCC
Confidence 5799999999999999998852 2222221 22334455555555433222
Q ss_pred EEEee------cCeeEEEEeCCCCCCchHHHHHHHH--hcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCc
Q 007325 148 TTTYW------NKHRINIIDTPGHVDFTLEVERALR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDR 219 (608)
Q Consensus 148 ~~~~~------~~~~i~liDTPG~~df~~~~~~~l~--~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~ 219 (608)
.+++| ....++|||..||+.|.+.+.-++. .-|...++|-++.|+...|.+++..+...++|+++|++|+|.
T Consensus 206 ~~LdWvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDM 285 (641)
T KOG0463|consen 206 HNLDWVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDM 285 (641)
T ss_pred CcccceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEEEeecc
Confidence 12333 1346899999999999988877774 459999999999999999999999999999999999999999
Q ss_pred CCCc-HHHHHHHHHHhhCCccEEEeccCC--CCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHH
Q 007325 220 LGAN-FFRTRDMIVTNLGAKPLVVQLPVG--AEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMI 296 (608)
Q Consensus 220 ~~~~-~~~~~~~i~~~l~~~~~~~~~pi~--~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~ 296 (608)
..++ +++.+.-+...+.. +-...+|+- .-+ |++ .....|
T Consensus 286 CPANiLqEtmKll~rllkS-~gcrK~PvlVrs~D------DVv---------------~~A~NF---------------- 327 (641)
T KOG0463|consen 286 CPANILQETMKLLTRLLKS-PGCRKLPVLVRSMD------DVV---------------HAAVNF---------------- 327 (641)
T ss_pred CcHHHHHHHHHHHHHHhcC-CCcccCcEEEeccc------ceE---------------EeeccC----------------
Confidence 9888 45555555555532 112223321 000 000 000011
Q ss_pred HHHHhhcHHHHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeeccCCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCc
Q 007325 297 ETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENP 376 (608)
Q Consensus 297 e~~~~~dd~l~e~~l~~~~~~~~el~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~ 376 (608)
...+++|+|-+|..+|.+++ ||.+..+.++.-..
T Consensus 328 ---------------------------------~Ser~CPIFQvSNVtG~NL~-LLkmFLNlls~R~~------------ 361 (641)
T KOG0463|consen 328 ---------------------------------PSERVCPIFQVSNVTGTNLP-LLKMFLNLLSLRRQ------------ 361 (641)
T ss_pred ---------------------------------ccccccceEEeccccCCChH-HHHHHHhhcCcccc------------
Confidence 12356899999999999975 77777777764322
Q ss_pred cchhccccCCCCCeEEEEEEeeecCCCceEEEEEEecceeCCCCEEEeCCCCc----eeecceEEEeecCceeecCeeec
Q 007325 377 EATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGK----KERIGRLLEMHANSREDVKVALA 452 (608)
Q Consensus 377 ~~~~~~~~~~~~p~~~~V~K~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~----~~ki~~i~~~~g~~~~~v~~a~a 452 (608)
.+.+.|.-.+|..+++.|++|.++-+..++|+++-+|.+...++-. ...|+.|. +++.+|..+.+
T Consensus 362 -------~~E~~PAeFQIDD~Y~VpGVGTvvSGT~L~GtIrLND~LlLGPd~~G~F~pI~iKSIH----RKRMpV~~Vrc 430 (641)
T KOG0463|consen 362 -------LNENDPAEFQIDDIYWVPGVGTVVSGTLLSGTIRLNDILLLGPDSNGDFMPIPIKSIH----RKRMPVGIVRC 430 (641)
T ss_pred -------cccCCCcceeecceEecCCcceEeecceeeeeEEeccEEEecCCCCCCeeeeehhhhh----hccccceEEec
Confidence 1246788889999999999999999999999999999999776432 23455554 67899999999
Q ss_pred CCEEEE--cCCC--cccccceeccCCCC
Q 007325 453 GDIIAL--AGLK--DTITGETLCDADHP 476 (608)
Q Consensus 453 GdIv~i--~gl~--~~~~GdtL~~~~~~ 476 (608)
|+-..+ .+++ ++++|.++.++.-.
T Consensus 431 GQtASFALKKIkr~~vRKGMVmVsp~lk 458 (641)
T KOG0463|consen 431 GQTASFALKKIKRKDVRKGMVMVSPKLK 458 (641)
T ss_pred cchhhhHhhhcchhhhhcceEEecCCCC
Confidence 998765 4443 48899999987643
No 102
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=99.75 E-value=4.9e-18 Score=141.42 Aligned_cols=81 Identities=33% Similarity=0.514 Sum_probs=77.8
Q ss_pred EEEEEeee---cCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCeeecCCEEEEcCCCcccccc
Q 007325 392 GLAFKIMS---DPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGE 468 (608)
Q Consensus 392 ~~V~K~~~---d~~~G~la~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gd 468 (608)
++|||+.+ ||+.|+++|+|||||+|++||.|++...++.+++++|+.++|.+..++++|.||||+++.|++++.+||
T Consensus 1 ~~vfKv~~~~~~~~~Gkla~~Rv~sG~l~~g~~v~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~v~gl~~~~~Gd 80 (85)
T cd03689 1 GFVFKIQANMDPAHRDRIAFVRVCSGKFERGMKVKHVRLGKEVRLSNPQQFFAQDRETVDEAYPGDIIGLVNPGNFQIGD 80 (85)
T ss_pred CEEEEEecccCCCCCcEEEEEEEECCEEcCCCEEEEcCCCCEEEeeEeEEEecCCeeEcCEECCCCEEEEECCCCccccC
Confidence 58999999 999999999999999999999999998888899999999999999999999999999999999999999
Q ss_pred eecc
Q 007325 469 TLCD 472 (608)
Q Consensus 469 tL~~ 472 (608)
|||+
T Consensus 81 tl~~ 84 (85)
T cd03689 81 TLTE 84 (85)
T ss_pred EeeC
Confidence 9984
No 103
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.75 E-value=4.7e-17 Score=153.37 Aligned_cols=116 Identities=20% Similarity=0.189 Sum_probs=87.6
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCch
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~ 169 (608)
.++|+++|++|+|||||+++|+...... .+..++.|.......+..++..+++|||||+.+..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~ 64 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVI-----------------VSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKG 64 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccee-----------------ccCCCCCccCceeeEEEECCeeEEEEECCCCcccc
Confidence 3589999999999999999996321100 01123445555555666778889999999986541
Q ss_pred -----------HHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCC
Q 007325 170 -----------LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (608)
Q Consensus 170 -----------~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (608)
.....+++.+|++++|+|+.++...+...+++.+...+.|+++++||+|+...
T Consensus 65 ~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~ 128 (174)
T cd01895 65 KVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEK 128 (174)
T ss_pred chhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCc
Confidence 12344677899999999999988888878888888889999999999998654
No 104
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.75 E-value=2.7e-17 Score=153.90 Aligned_cols=112 Identities=20% Similarity=0.172 Sum_probs=78.4
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchHH
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (608)
+|+++|.+|+|||||+++|..... ....+. -|+......+.+.+..+++|||||+.+|...
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~---~~~~~~----------------~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 61 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENA---QSQIIV----------------PTVGFNVESFEKGNLSFTAFDMSGQGKYRGL 61 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCC---Ccceec----------------CccccceEEEEECCEEEEEEECCCCHhhHHH
Confidence 589999999999999999962210 000100 0222222334567889999999999999999
Q ss_pred HHHHHHhcCeEEEEEcCCCCCchhH-HHHHHHH------HhcCCCEEEEEeCCCcCCC
Q 007325 172 VERALRVLDGAICLFDSVAGVEPQS-ETVWRQA------DKYGVPRICFVNKMDRLGA 222 (608)
Q Consensus 172 ~~~~l~~~D~~i~VvDa~~g~~~~t-~~~~~~~------~~~~~p~ivviNK~D~~~~ 222 (608)
+..+++.+|++|+|+|+++...... ...+..+ ...++|+++|+||+|+..+
T Consensus 62 ~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~ 119 (162)
T cd04157 62 WEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA 119 (162)
T ss_pred HHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC
Confidence 9999999999999999997543211 1122222 1247999999999998654
No 105
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.74 E-value=3.2e-17 Score=153.35 Aligned_cols=110 Identities=22% Similarity=0.167 Sum_probs=77.9
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchHH
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (608)
+|+++|++|+|||||+++|.... .. ++. .|+......+.+.+..+.+|||||+.+|...
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~--~~------------~~~-------~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 59 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGE--VV------------TTI-------PTIGFNVETVTYKNLKFQVWDLGGQTSIRPY 59 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCC--Cc------------CcC-------CccCcCeEEEEECCEEEEEEECCCCHHHHHH
Confidence 48999999999999999995211 10 000 0222233345567789999999999999988
Q ss_pred HHHHHHhcCeEEEEEcCCCCCchh-HHHHHH-HHH---hcCCCEEEEEeCCCcCCC
Q 007325 172 VERALRVLDGAICLFDSVAGVEPQ-SETVWR-QAD---KYGVPRICFVNKMDRLGA 222 (608)
Q Consensus 172 ~~~~l~~~D~~i~VvDa~~g~~~~-t~~~~~-~~~---~~~~p~ivviNK~D~~~~ 222 (608)
+..+++.+|++|+|+|+++..... ....|. .+. ..++|+++|+||+|+..+
T Consensus 60 ~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~ 115 (158)
T cd04151 60 WRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGA 115 (158)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCC
Confidence 889999999999999998743221 122222 222 247899999999998654
No 106
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=99.74 E-value=9.5e-18 Score=139.57 Aligned_cols=83 Identities=65% Similarity=1.034 Sum_probs=79.5
Q ss_pred eEEEEEEeeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCeeecCCEEEEcCCCcccccce
Q 007325 390 FAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGET 469 (608)
Q Consensus 390 ~~~~V~K~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdt 469 (608)
++++|||+.+|++.|+++|+|||+|+|++||.|++...++.+++++|+.++|.++.+++++.|||||+|.|++++.+|||
T Consensus 1 ~~a~Vfk~~~d~~~G~~~~~Rv~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~g~~~~~~Gdt 80 (83)
T cd04088 1 FVALVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNSTKGKKERVGRLLRMHGKKQEEVEEAGAGDIGAVAGLKDTATGDT 80 (83)
T ss_pred CEEEEEEcccCCCCceEEEEEEecCEEcCCCEEEECCCCcEEEeeEEEEEcCCCceECCEeCCCCEEEEECCCCCccCCE
Confidence 57899999999999999999999999999999999988888999999999999999999999999999999999999999
Q ss_pred ecc
Q 007325 470 LCD 472 (608)
Q Consensus 470 L~~ 472 (608)
|++
T Consensus 81 l~~ 83 (83)
T cd04088 81 LCD 83 (83)
T ss_pred eeC
Confidence 963
No 107
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.74 E-value=3.6e-17 Score=179.76 Aligned_cols=116 Identities=16% Similarity=0.205 Sum_probs=90.9
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCC-
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD- 167 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d- 167 (608)
..++|+++|++|+|||||+|+|+.... . ..+...|+|.+.....+.+++..+.||||||+.+
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~---~--------------~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~ 272 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEER---S--------------VVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRR 272 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCc---c--------------cccCCCCccCCcceEEEEECCEEEEEEECCCcccc
Confidence 568999999999999999999972211 0 0112345676666667778889999999999632
Q ss_pred --------chHH--HHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCC
Q 007325 168 --------FTLE--VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (608)
Q Consensus 168 --------f~~~--~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~ 221 (608)
+... ...+++.+|++|+|+|++++...+...++..+...++|+++|+||+|+..
T Consensus 273 ~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~ 336 (472)
T PRK03003 273 VKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVD 336 (472)
T ss_pred ccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCC
Confidence 2222 23467899999999999999999999888888889999999999999864
No 108
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.74 E-value=4.1e-17 Score=179.24 Aligned_cols=117 Identities=25% Similarity=0.354 Sum_probs=94.8
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 167 (608)
...++|+|+|.+|+|||||+|+|+..... ..+...|+|.+.....+.|++..++||||||+..
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~-----------------~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~ 98 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREA-----------------VVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEP 98 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcc-----------------cccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCC
Confidence 45689999999999999999999622110 0122356787777778888999999999999863
Q ss_pred --------chHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCC
Q 007325 168 --------FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (608)
Q Consensus 168 --------f~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~ 221 (608)
+...+..+++.+|++|+|+|++++.......+++.+...++|+++|+||+|+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~ 160 (472)
T PRK03003 99 DAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDER 160 (472)
T ss_pred cchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCc
Confidence 344566788999999999999999888778888888889999999999999753
No 109
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.74 E-value=5.1e-17 Score=153.02 Aligned_cols=114 Identities=22% Similarity=0.229 Sum_probs=80.5
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCCCCCC
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVD 167 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~d 167 (608)
.++|+++|++|+|||||+++++. +..... ....+..+.....+.+++ ..+++|||||+.+
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~--~~~~~~----------------~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~ 64 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKS--GTFSER----------------QGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQER 64 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhh--CCCccc----------------CCCccceEEEEEEEEECCEEEEEEEEECCChHH
Confidence 47999999999999999999962 211100 001112223333445555 5789999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHHH---hcCCCEEEEEeCCCcCC
Q 007325 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQAD---KYGVPRICFVNKMDRLG 221 (608)
Q Consensus 168 f~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~~---~~~~p~ivviNK~D~~~ 221 (608)
|.......++.+|++++|+|+++....+....| ..+. ..++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 122 (165)
T cd01864 65 FRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEE 122 (165)
T ss_pred HHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 998889999999999999999976544443333 2222 24789999999999854
No 110
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.73 E-value=5.2e-17 Score=151.67 Aligned_cols=110 Identities=23% Similarity=0.202 Sum_probs=79.4
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchHH
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (608)
+|+++|++|+|||||+++++... .. . ...|+......+.+.+..+.+|||||+..|...
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~--~~---~----------------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 59 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGE--VV---T----------------TIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPL 59 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCC--CC---C----------------CCCCcCcceEEEEECCEEEEEEECCCChhhHHH
Confidence 48999999999999999997222 00 0 011333334455667889999999999999888
Q ss_pred HHHHHHhcCeEEEEEcCCCCCc-hhHHHHHHHH----HhcCCCEEEEEeCCCcCCC
Q 007325 172 VERALRVLDGAICLFDSVAGVE-PQSETVWRQA----DKYGVPRICFVNKMDRLGA 222 (608)
Q Consensus 172 ~~~~l~~~D~~i~VvDa~~g~~-~~t~~~~~~~----~~~~~p~ivviNK~D~~~~ 222 (608)
....++.+|++++|+|++..-. ......+..+ ...+.|+++|+||+|+...
T Consensus 60 ~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 115 (158)
T cd00878 60 WKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGA 115 (158)
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccc
Confidence 8889999999999999997521 1222223222 2357899999999998653
No 111
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=99.73 E-value=1.7e-17 Score=137.31 Aligned_cols=81 Identities=46% Similarity=0.792 Sum_probs=77.2
Q ss_pred eEEEEEEeeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCeeecCCEEEEcCCCcccccce
Q 007325 390 FAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGET 469 (608)
Q Consensus 390 ~~~~V~K~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdt 469 (608)
|+++|||+.+|++ |+++|+|||+|+|++||.|++...++++++.+|+.++|.++.+++++.||||+++.|++ +.+|||
T Consensus 1 ~~a~vfK~~~~~~-G~i~~~Rv~sG~lk~gd~v~~~~~~~~~~v~~i~~~~g~~~~~~~~~~aGdI~~i~g~~-~~~Gdt 78 (81)
T cd04091 1 FVGLAFKLEEGRF-GQLTYMRIYQGKLKKGDTIYNVRTGKKVRVPRLVRMHSNEMEEVEEAGAGDICAIFGID-CASGDT 78 (81)
T ss_pred CeEEEEEeecCCC-CCEEEEEEecCEEcCCCEEEEcCCCCEEEEeEEEEEeCCCceEccEECCCCEEEEECCC-cccCCE
Confidence 5799999999998 99999999999999999999998888899999999999999999999999999999998 999999
Q ss_pred ecc
Q 007325 470 LCD 472 (608)
Q Consensus 470 L~~ 472 (608)
|++
T Consensus 79 l~~ 81 (81)
T cd04091 79 FTD 81 (81)
T ss_pred ecC
Confidence 973
No 112
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.73 E-value=8.9e-17 Score=151.77 Aligned_cols=112 Identities=18% Similarity=0.216 Sum_probs=75.9
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCe-eEEEEeCCCCCC---
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKH-RINIIDTPGHVD--- 167 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~-~i~liDTPG~~d--- 167 (608)
+|+++|++|||||||+++|... ....+. ..+.|.......+.+++. .+++|||||+.+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~---~~~v~~---------------~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 63 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNA---KPKIAD---------------YPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGAS 63 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcC---CccccC---------------CCccccCCcceEEEcCCCCeEEEEecCcccCccc
Confidence 7999999999999999999621 111111 122344555555666666 899999999753
Q ss_pred ----chHHHHHHHHhcCeEEEEEcCCCC-CchhHHHHH-HHHHh-----cCCCEEEEEeCCCcCC
Q 007325 168 ----FTLEVERALRVLDGAICLFDSVAG-VEPQSETVW-RQADK-----YGVPRICFVNKMDRLG 221 (608)
Q Consensus 168 ----f~~~~~~~l~~~D~~i~VvDa~~g-~~~~t~~~~-~~~~~-----~~~p~ivviNK~D~~~ 221 (608)
+...+.+.+..+|++++|+|+++. -..+....| +.+.. .++|+++|+||+|+..
T Consensus 64 ~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~ 128 (170)
T cd01898 64 EGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLD 128 (170)
T ss_pred ccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCC
Confidence 334455566779999999999976 233333333 33332 3689999999999854
No 113
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.73 E-value=1.1e-16 Score=151.05 Aligned_cols=113 Identities=19% Similarity=0.253 Sum_probs=74.9
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCch-
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT- 169 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~- 169 (608)
|+|+++|++|+|||||+++|+.... .. ....+.|.......+.+++..+++|||||+.+..
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~---~~---------------~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 62 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKP---EV---------------APYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPL 62 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC---cc---------------CCCCCcccceeEEEEccCceEEEEEECCCcCCccc
Confidence 6899999999999999999962211 00 0112335555555566677899999999985421
Q ss_pred -------HHHHHHH-HhcCeEEEEEcCCCCCc---hhHHHHHHHHHhc--CCCEEEEEeCCCcCC
Q 007325 170 -------LEVERAL-RVLDGAICLFDSVAGVE---PQSETVWRQADKY--GVPRICFVNKMDRLG 221 (608)
Q Consensus 170 -------~~~~~~l-~~~D~~i~VvDa~~g~~---~~t~~~~~~~~~~--~~p~ivviNK~D~~~ 221 (608)
.....++ ..+|++|+|+|+++... ......+..+... ++|+++|+||+|+..
T Consensus 63 ~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~ 127 (168)
T cd01897 63 EERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLT 127 (168)
T ss_pred cCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCc
Confidence 1111222 33699999999986432 2223344555544 799999999999854
No 114
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.73 E-value=1.2e-16 Score=152.31 Aligned_cols=111 Identities=21% Similarity=0.192 Sum_probs=80.8
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCch
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~ 169 (608)
..+|+++|++|+|||||+++|.. +.... . ..|+......+.+++..+.+|||||+..|.
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~--~~~~~------------~-------~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~ 73 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLL--GEVVH------------T-------SPTIGSNVEEIVYKNIRFLMWDIGGQESLR 73 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHcc--CCCCC------------c-------CCccccceEEEEECCeEEEEEECCCCHHHH
Confidence 46899999999999999999962 21100 0 113333445566778899999999999999
Q ss_pred HHHHHHHHhcCeEEEEEcCCCCCchh--HHHHHHHHHh---cCCCEEEEEeCCCcCC
Q 007325 170 LEVERALRVLDGAICLFDSVAGVEPQ--SETVWRQADK---YGVPRICFVNKMDRLG 221 (608)
Q Consensus 170 ~~~~~~l~~~D~~i~VvDa~~g~~~~--t~~~~~~~~~---~~~p~ivviNK~D~~~ 221 (608)
..+..+++.+|++|+|+|+++..... ...+.+.+.. .++|+++++||+|+..
T Consensus 74 ~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~ 130 (174)
T cd04153 74 SSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG 130 (174)
T ss_pred HHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC
Confidence 88999999999999999998753221 1222233222 3689999999999864
No 115
>PRK00089 era GTPase Era; Reviewed
Probab=99.72 E-value=2.2e-16 Score=163.23 Aligned_cols=114 Identities=19% Similarity=0.204 Sum_probs=82.4
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCc-
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF- 168 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df- 168 (608)
.-.|+++|.+|+|||||+|+|+.. ....... ..++|..........++.++.++||||+.+.
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~---~~~~vs~--------------~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~ 67 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQ---KISIVSP--------------KPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPK 67 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCC---ceeecCC--------------CCCcccccEEEEEEcCCceEEEEECCCCCCch
Confidence 458999999999999999999622 1111110 1112322222223335679999999998663
Q ss_pred -------hHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcC
Q 007325 169 -------TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (608)
Q Consensus 169 -------~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~ 220 (608)
...+..++..+|++++|+|+.++.......+++.+...++|+++|+||+|+.
T Consensus 68 ~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~ 126 (292)
T PRK00089 68 RALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLV 126 (292)
T ss_pred hHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCC
Confidence 2345567788999999999999777777778888877789999999999986
No 116
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=1e-17 Score=164.06 Aligned_cols=247 Identities=22% Similarity=0.342 Sum_probs=175.2
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEee-----------------
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW----------------- 152 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~----------------- 152 (608)
..||+.+||..+||||++.++ +|.-. -..+.|-+|.||++..+.+...
T Consensus 38 TiNIGTIGHVAHGKSTvVkAi---SGv~T------------vrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~ 102 (466)
T KOG0466|consen 38 TINIGTIGHVAHGKSTVVKAI---SGVHT------------VRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSF 102 (466)
T ss_pred eeeecceeccccCcceeeeee---ccceE------------EEehhhhhcceeEEeccccceEEecCCCCCCCcchhhcc
Confidence 479999999999999999998 34211 1234567788888877766443
Q ss_pred ----------------c----CeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCC-CchhHHHHHHHHHhcCCCEE
Q 007325 153 ----------------N----KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG-VEPQSETVWRQADKYGVPRI 211 (608)
Q Consensus 153 ----------------~----~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g-~~~~t~~~~~~~~~~~~p~i 211 (608)
+ -+.+.++|+|||.-+...+..+....|+++++|.+++. .++||.+++....-+++..+
T Consensus 103 gS~k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~Lkhi 182 (466)
T KOG0466|consen 103 GSSKEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHI 182 (466)
T ss_pred CCCCCCCCCcccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceE
Confidence 0 13578999999999999999999999999999999864 68999999998888888776
Q ss_pred EE-EeCCCcCCCcHHHHHHHHHHhhCCccEEEeccCCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHH
Q 007325 212 CF-VNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQE 290 (608)
Q Consensus 212 vv-iNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 290 (608)
++ -||+|+...+. .+
T Consensus 183 iilQNKiDli~e~~--A~-------------------------------------------------------------- 198 (466)
T KOG0466|consen 183 IILQNKIDLIKESQ--AL-------------------------------------------------------------- 198 (466)
T ss_pred EEEechhhhhhHHH--HH--------------------------------------------------------------
Confidence 65 59999875421 00
Q ss_pred HHHHHHHHHHhhcHHHHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeeccCCCCChHHHHHHHHHhCCCCCCCCCCCC
Q 007325 291 YRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKG 370 (608)
Q Consensus 291 ~r~~l~e~~~~~dd~l~e~~l~~~~~~~~el~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~ 370 (608)
|+| +++.+.++.....+ .|++.+||.-+.+|+.+.++|++++|-|..
T Consensus 199 -----------------eq~--------e~I~kFi~~t~ae~--aPiiPisAQlkyNId~v~eyivkkIPvPvR------ 245 (466)
T KOG0466|consen 199 -----------------EQH--------EQIQKFIQGTVAEG--APIIPISAQLKYNIDVVCEYIVKKIPVPVR------ 245 (466)
T ss_pred -----------------HHH--------HHHHHHHhccccCC--CceeeehhhhccChHHHHHHHHhcCCCCcc------
Confidence 111 11112222112211 378888999999999999999999998865
Q ss_pred CCCCCccchhccccCCCCCeEEEEEEeee--------cCCCceEEEEEEecceeCCCCEEEeCCC-------Cc-ee--e
Q 007325 371 TDPENPEATLERAASDDEPFAGLAFKIMS--------DPFVGSLTFVRVYAGTLSAGSYVLNANK-------GK-KE--R 432 (608)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~p~~~~V~K~~~--------d~~~G~la~~RV~sG~l~~g~~v~~~~~-------~~-~~--k 432 (608)
|...|..+.|.+.+. +.-.|-++-+.+..|.|+.||.+-+-+. |+ .. -
T Consensus 246 --------------df~s~prlIVIRSFDVNkPG~ev~~lkGgvaggsil~Gvlkvg~~IEiRPGiv~kd~~g~~~C~Pi 311 (466)
T KOG0466|consen 246 --------------DFTSPPRLIVIRSFDVNKPGSEVDDLKGGVAGGSILKGVLKVGQEIEIRPGIVTKDENGNIKCRPI 311 (466)
T ss_pred --------------ccCCCCcEEEEEeeccCCCCchhhcccCccccchhhhhhhhcCcEEEecCceeeecCCCcEEEeeH
Confidence 234566677777653 3335789999999999999999975321 11 11 1
Q ss_pred cceEEEeecCceeecCeeecCCEEEE-cCCCc
Q 007325 433 IGRLLEMHANSREDVKVALAGDIIAL-AGLKD 463 (608)
Q Consensus 433 i~~i~~~~g~~~~~v~~a~aGdIv~i-~gl~~ 463 (608)
..+|..+.+ +..+++.|.+|-.+++ ++++.
T Consensus 312 ~SrI~sL~A-E~n~L~~AvPGGLIGVGT~~DP 342 (466)
T KOG0466|consen 312 FSRIVSLFA-EQNDLQFAVPGGLIGVGTKMDP 342 (466)
T ss_pred HHHHHHHHh-hhccceeecCCceeeeccccCc
Confidence 233333443 4567899999999988 34443
No 117
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.72 E-value=5.9e-17 Score=176.56 Aligned_cols=113 Identities=24% Similarity=0.321 Sum_probs=93.5
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCC----
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD---- 167 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d---- 167 (608)
.|+|+|++|+|||||+|+|+.... .. .+...|+|.+.....+.|++..+++|||||+..
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~---~~--------------v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~ 63 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRD---AI--------------VSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDG 63 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCc---ce--------------ecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchh
Confidence 489999999999999999962211 10 112356788888888899999999999999843
Q ss_pred ----chHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCC
Q 007325 168 ----FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (608)
Q Consensus 168 ----f~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~ 221 (608)
+...+..+++.+|++++|+|+.++....+..+++.+++.++|+++|+||+|+..
T Consensus 64 ~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~ 121 (429)
T TIGR03594 64 LDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKK 121 (429)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCc
Confidence 445567788999999999999999999999999999999999999999999754
No 118
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.72 E-value=1.7e-16 Score=149.65 Aligned_cols=135 Identities=17% Similarity=0.206 Sum_probs=102.3
Q ss_pred ccCCCCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeC
Q 007325 83 RVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDT 162 (608)
Q Consensus 83 ~~~~~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDT 162 (608)
.+.|.+..+.||++|.+|+|||||+|+|+...+ ..+ ..+.+|.|...+...+.. .+.++|.
T Consensus 17 ~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~-LAr---------------tSktPGrTq~iNff~~~~---~~~lVDl 77 (200)
T COG0218 17 KQYPEDDLPEIAFAGRSNVGKSSLINALTNQKN-LAR---------------TSKTPGRTQLINFFEVDD---ELRLVDL 77 (200)
T ss_pred hhCCCCCCcEEEEEccCcccHHHHHHHHhCCcc-eee---------------cCCCCCccceeEEEEecC---cEEEEeC
Confidence 567778889999999999999999999963222 111 123467788888766633 3899999
Q ss_pred CCCCC----------chHHHHHHH---HhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCC-cHHHHH
Q 007325 163 PGHVD----------FTLEVERAL---RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA-NFFRTR 228 (608)
Q Consensus 163 PG~~d----------f~~~~~~~l---~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~-~~~~~~ 228 (608)
||+.= +...+..++ ....+++++||+.++....+.+.++.+...++|+++++||+|+... +..+.+
T Consensus 78 PGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l 157 (200)
T COG0218 78 PGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQL 157 (200)
T ss_pred CCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHHHHHH
Confidence 99742 333444444 3458899999999999999999999999999999999999999873 355556
Q ss_pred HHHHHhhC
Q 007325 229 DMIVTNLG 236 (608)
Q Consensus 229 ~~i~~~l~ 236 (608)
..+++.++
T Consensus 158 ~~v~~~l~ 165 (200)
T COG0218 158 NKVAEELK 165 (200)
T ss_pred HHHHHHhc
Confidence 66665544
No 119
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.72 E-value=2.5e-16 Score=147.66 Aligned_cols=112 Identities=19% Similarity=0.173 Sum_probs=75.8
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCCCCCCc
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDF 168 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~df 168 (608)
-+|+++|.+|+|||||+++++...... .+.+ .+.......+.+++ ..+++|||||+.+|
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~~-------------~~~~------t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 63 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFVT-------------DYDP------TIEDSYTKQCEIDGQWAILDILDTAGQEEF 63 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCc-------------ccCC------CccceEEEEEEECCEEEEEEEEECCCCcch
Confidence 489999999999999999997332110 0000 00000111222333 57889999999999
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHH----HhcCCCEEEEEeCCCcCC
Q 007325 169 TLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQA----DKYGVPRICFVNKMDRLG 221 (608)
Q Consensus 169 ~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~----~~~~~p~ivviNK~D~~~ 221 (608)
.......++.+|++++|+|+++........-| ..+ ...++|+++|+||+|+..
T Consensus 64 ~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~ 121 (164)
T cd04145 64 SAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEH 121 (164)
T ss_pred hHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccc
Confidence 99999999999999999999875432222222 222 234789999999999753
No 120
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.72 E-value=9.2e-17 Score=167.75 Aligned_cols=133 Identities=21% Similarity=0.222 Sum_probs=92.5
Q ss_pred hhHHHHhhhhhhccCCCCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEE
Q 007325 71 FSVFAMAAEESKRVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTT 150 (608)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~ 150 (608)
+...+...++..-..+.+-+..|+|||.+|||||||+++|.. ...++.. + .++|+......+
T Consensus 139 ~~~~g~~g~~~~~~lelk~~adVglVG~PNaGKSTLln~ls~---a~~~va~---------y------pfTT~~p~~G~v 200 (335)
T PRK12299 139 YATPGEPGEERWLRLELKLLADVGLVGLPNAGKSTLISAVSA---AKPKIAD---------Y------PFTTLHPNLGVV 200 (335)
T ss_pred cccCCCCCcEEEEEEEEcccCCEEEEcCCCCCHHHHHHHHHc---CCCccCC---------C------CCceeCceEEEE
Confidence 333344444333445667789999999999999999999952 2111111 1 245788888888
Q ss_pred ee-cCeeEEEEeCCCCCC-------chHHHHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHHHh-----cCCCEEEEEeC
Q 007325 151 YW-NKHRINIIDTPGHVD-------FTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK-----YGVPRICFVNK 216 (608)
Q Consensus 151 ~~-~~~~i~liDTPG~~d-------f~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~~~-----~~~p~ivviNK 216 (608)
.+ ++..+.++||||..+ +...+.+.+..+|++|+|+|+++.-..+....| ..+.. .++|+++|+||
T Consensus 201 ~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NK 280 (335)
T PRK12299 201 RVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNK 280 (335)
T ss_pred EeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEEC
Confidence 87 567899999999864 445667778889999999999864333333333 44433 36899999999
Q ss_pred CCcCC
Q 007325 217 MDRLG 221 (608)
Q Consensus 217 ~D~~~ 221 (608)
+|+..
T Consensus 281 iDL~~ 285 (335)
T PRK12299 281 IDLLD 285 (335)
T ss_pred cccCC
Confidence 99864
No 121
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.71 E-value=1.7e-16 Score=150.30 Aligned_cols=110 Identities=18% Similarity=0.154 Sum_probs=76.9
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchH
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~ 170 (608)
.+|+++|++|+|||||+++|.. +... ++.+ |+......+...+..+.+|||||+.+|..
T Consensus 10 ~kv~i~G~~~~GKTsli~~l~~--~~~~------------~~~~-------t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~ 68 (168)
T cd04149 10 MRILMLGLDAAGKTTILYKLKL--GQSV------------TTIP-------TVGFNVETVTYKNVKFNVWDVGGQDKIRP 68 (168)
T ss_pred cEEEEECcCCCCHHHHHHHHcc--CCCc------------cccC-------CcccceEEEEECCEEEEEEECCCCHHHHH
Confidence 5899999999999999999952 1110 0000 11112223445678999999999999988
Q ss_pred HHHHHHHhcCeEEEEEcCCCCCch-hHHHHHHHHH----hcCCCEEEEEeCCCcCC
Q 007325 171 EVERALRVLDGAICLFDSVAGVEP-QSETVWRQAD----KYGVPRICFVNKMDRLG 221 (608)
Q Consensus 171 ~~~~~l~~~D~~i~VvDa~~g~~~-~t~~~~~~~~----~~~~p~ivviNK~D~~~ 221 (608)
....+++.+|++|+|+|+++.... .....|.... ..++|+++|.||+|+..
T Consensus 69 ~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 124 (168)
T cd04149 69 LWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD 124 (168)
T ss_pred HHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc
Confidence 888899999999999999974221 1222333222 24689999999999754
No 122
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.71 E-value=1.3e-16 Score=153.92 Aligned_cols=112 Identities=21% Similarity=0.157 Sum_probs=80.1
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCch
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~ 169 (608)
..+|+++|+.|+|||||+++|.. +... .. ..|+......+.+++..+.++||||+.+|.
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~--~~~~---~~----------------~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~ 77 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKD--DRLA---QH----------------VPTLHPTSEELTIGNIKFKTFDLGGHEQAR 77 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc--CCCc---cc----------------CCccCcceEEEEECCEEEEEEECCCCHHHH
Confidence 46889999999999999999962 1110 00 013333445566778899999999999998
Q ss_pred HHHHHHHHhcCeEEEEEcCCCCCchh-HHHHHHHH----HhcCCCEEEEEeCCCcCCC
Q 007325 170 LEVERALRVLDGAICLFDSVAGVEPQ-SETVWRQA----DKYGVPRICFVNKMDRLGA 222 (608)
Q Consensus 170 ~~~~~~l~~~D~~i~VvDa~~g~~~~-t~~~~~~~----~~~~~p~ivviNK~D~~~~ 222 (608)
..+..+++.+|++++|+|+++.-... ....+..+ ...+.|+++|+||+|+...
T Consensus 78 ~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~ 135 (190)
T cd00879 78 RLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGA 135 (190)
T ss_pred HHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCC
Confidence 88888899999999999998642211 12222222 2356999999999998643
No 123
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.71 E-value=1.1e-16 Score=148.93 Aligned_cols=108 Identities=19% Similarity=0.234 Sum_probs=80.4
Q ss_pred EEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchHH---
Q 007325 95 IMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE--- 171 (608)
Q Consensus 95 ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~--- 171 (608)
++|++|+|||||++++. +..... ...+++|+......+.+++..+++|||||+.+|...
T Consensus 1 l~G~~~~GKssl~~~~~---~~~~~~---------------~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~ 62 (158)
T cd01879 1 LVGNPNVGKTTLFNALT---GARQKV---------------GNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSED 62 (158)
T ss_pred CCCCCCCCHHHHHHHHh---cCcccc---------------cCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChh
Confidence 58999999999999995 211111 112466787777788888899999999999887532
Q ss_pred ---HHHHHH--hcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCC
Q 007325 172 ---VERALR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (608)
Q Consensus 172 ---~~~~l~--~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (608)
...++. .+|++|+|+|+... ......+.++...++|+++|+||+|+...
T Consensus 63 ~~~~~~~~~~~~~d~vi~v~d~~~~--~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~ 116 (158)
T cd01879 63 EKVARDFLLGEKPDLIVNVVDATNL--ERNLYLTLQLLELGLPVVVALNMIDEAEK 116 (158)
T ss_pred HHHHHHHhcCCCCcEEEEEeeCCcc--hhHHHHHHHHHHcCCCEEEEEehhhhccc
Confidence 334443 89999999999873 33344556667789999999999998643
No 124
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.71 E-value=2.1e-16 Score=148.51 Aligned_cols=113 Identities=19% Similarity=0.239 Sum_probs=78.9
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchHH
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (608)
+|+++|.+|+|||||+++++.... ... .....+.++......+......+++|||||+..|...
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~--~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 65 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGY--EPQ--------------QLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTM 65 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--CCC--------------cCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhh
Confidence 689999999999999999973211 000 0001122222222233334567899999999999999
Q ss_pred HHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHHHhc--CCCEEEEEeCCCcC
Q 007325 172 VERALRVLDGAICLFDSVAGVEPQSETVW-RQADKY--GVPRICFVNKMDRL 220 (608)
Q Consensus 172 ~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~~~~--~~p~ivviNK~D~~ 220 (608)
...+++.+|++|+|+|+++....+....| ..+.+. ++|+++|+||+|+.
T Consensus 66 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~ 117 (161)
T cd04124 66 HASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLD 117 (161)
T ss_pred hHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCc
Confidence 99999999999999999876554444333 334333 79999999999974
No 125
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.71 E-value=1e-16 Score=184.15 Aligned_cols=117 Identities=18% Similarity=0.212 Sum_probs=91.4
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 167 (608)
...++|+++|++|+|||||+|+|+..... . .....|+|.+.....+.+++..+.||||||+.+
T Consensus 448 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~---~--------------v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~ 510 (712)
T PRK09518 448 SGLRRVALVGRPNVGKSSLLNQLTHEERA---V--------------VNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKR 510 (712)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccc---c--------------cCCCCCCCcCcceeEEEECCCEEEEEECCCccc
Confidence 34689999999999999999999732110 0 111245576666667778889999999999742
Q ss_pred ---------chHH--HHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCC
Q 007325 168 ---------FTLE--VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (608)
Q Consensus 168 ---------f~~~--~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~ 221 (608)
+... ...+++.+|++|+|+|++++...++..++..+...++|+++|+||+|+..
T Consensus 511 ~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~ 575 (712)
T PRK09518 511 RQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMD 575 (712)
T ss_pred CcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCC
Confidence 2211 23457889999999999999999999999988889999999999999864
No 126
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.71 E-value=1.6e-16 Score=165.88 Aligned_cols=131 Identities=21% Similarity=0.197 Sum_probs=87.9
Q ss_pred HHHHhhhhhhccCCCCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEee
Q 007325 73 VFAMAAEESKRVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW 152 (608)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~ 152 (608)
..+...++..-..+.+-+..|+|||.+|||||||+++|... ...... ...+|.......+.+
T Consensus 140 ~~g~~g~~~~~~lelk~~adV~lvG~pnaGKSTLl~~lt~~---~~~va~---------------y~fTT~~p~ig~v~~ 201 (329)
T TIGR02729 140 TPGEPGEERWLRLELKLLADVGLVGLPNAGKSTLISAVSAA---KPKIAD---------------YPFTTLVPNLGVVRV 201 (329)
T ss_pred CCCCCCcEEEEEEEeeccccEEEEcCCCCCHHHHHHHHhcC---CccccC---------------CCCCccCCEEEEEEe
Confidence 33333333334456677899999999999999999999521 111111 122366666666677
Q ss_pred cC-eeEEEEeCCCCCC-------chHHHHHHHHhcCeEEEEEcCCCC---CchhHHH-HHHHHHh-----cCCCEEEEEe
Q 007325 153 NK-HRINIIDTPGHVD-------FTLEVERALRVLDGAICLFDSVAG---VEPQSET-VWRQADK-----YGVPRICFVN 215 (608)
Q Consensus 153 ~~-~~i~liDTPG~~d-------f~~~~~~~l~~~D~~i~VvDa~~g---~~~~t~~-~~~~~~~-----~~~p~ivviN 215 (608)
.+ .++.|+||||+.+ +...+.+.+..+|++|+|+|+++. ....... +.+++.. .++|+++|+|
T Consensus 202 ~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~N 281 (329)
T TIGR02729 202 DDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLN 281 (329)
T ss_pred CCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEe
Confidence 66 8999999999864 344566677789999999999864 1222222 3333333 3689999999
Q ss_pred CCCcCC
Q 007325 216 KMDRLG 221 (608)
Q Consensus 216 K~D~~~ 221 (608)
|+|+..
T Consensus 282 K~DL~~ 287 (329)
T TIGR02729 282 KIDLLD 287 (329)
T ss_pred CccCCC
Confidence 999864
No 127
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.71 E-value=1.9e-16 Score=152.27 Aligned_cols=112 Identities=18% Similarity=0.103 Sum_probs=80.1
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCc
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 168 (608)
+..+|+++|.+|+|||||+++|... ... .+. .|.......+.+++.++.++||||+..+
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~--~~~---~~~----------------~t~~~~~~~~~~~~~~~~~~D~~G~~~~ 74 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKND--RLA---QHQ----------------PTQHPTSEELAIGNIKFTTFDLGGHQQA 74 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcC--CCc---ccC----------------CccccceEEEEECCEEEEEEECCCCHHH
Confidence 3468999999999999999999621 110 000 0222333455667889999999999999
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCCCch-hHHHHHHHH----HhcCCCEEEEEeCCCcCC
Q 007325 169 TLEVERALRVLDGAICLFDSVAGVEP-QSETVWRQA----DKYGVPRICFVNKMDRLG 221 (608)
Q Consensus 169 ~~~~~~~l~~~D~~i~VvDa~~g~~~-~t~~~~~~~----~~~~~p~ivviNK~D~~~ 221 (608)
...+..++..+|++|+|+|+++.... .....+..+ ...++|+++|+||+|+..
T Consensus 75 ~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~ 132 (184)
T smart00178 75 RRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY 132 (184)
T ss_pred HHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC
Confidence 88889999999999999999874221 122222222 225789999999999864
No 128
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.71 E-value=1.2e-16 Score=149.75 Aligned_cols=101 Identities=20% Similarity=0.227 Sum_probs=68.9
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCC----
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV---- 166 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~---- 166 (608)
++|+++|++|+|||||+|+|. |.... . .....+.|... .+|||||+.
T Consensus 2 ~~i~~iG~~~~GKstl~~~l~---~~~~~----------------------~--~~~~~v~~~~~--~~iDtpG~~~~~~ 52 (158)
T PRK15467 2 KRIAFVGAVGAGKTTLFNALQ---GNYTL----------------------A--RKTQAVEFNDK--GDIDTPGEYFSHP 52 (158)
T ss_pred cEEEEECCCCCCHHHHHHHHc---CCCcc----------------------C--ccceEEEECCC--CcccCCccccCCH
Confidence 479999999999999999984 21100 0 01112222222 379999973
Q ss_pred CchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCC
Q 007325 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (608)
Q Consensus 167 df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (608)
++..++..+++.+|++++|+|++++.......++.. ..++|+++++||+|+...
T Consensus 53 ~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~~~ 106 (158)
T PRK15467 53 RWYHALITTLQDVDMLIYVHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMPDA 106 (158)
T ss_pred HHHHHHHHHHhcCCEEEEEEeCCCcccccCHHHHhc--cCCCCeEEEEEccccCcc
Confidence 456666677899999999999997755444333322 346899999999998543
No 129
>PRK04213 GTP-binding protein; Provisional
Probab=99.71 E-value=2.9e-16 Score=153.02 Aligned_cols=112 Identities=21% Similarity=0.312 Sum_probs=75.5
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCC-
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD- 167 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d- 167 (608)
...+|+++|.+|+|||||+|+|. +.... ....+|+|..... +.++ .+++|||||+..
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~---~~~~~---------------~~~~~~~t~~~~~--~~~~--~~~l~Dt~G~~~~ 65 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELT---GKKVR---------------VGKRPGVTRKPNH--YDWG--DFILTDLPGFGFM 65 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh---CCCCc---------------cCCCCceeeCceE--Eeec--ceEEEeCCccccc
Confidence 45789999999999999999995 21111 1122455655433 3333 689999999632
Q ss_pred ----------chHHHHHH----HHhcCeEEEEEcCCCC-----------CchhHHHHHHHHHhcCCCEEEEEeCCCcCCC
Q 007325 168 ----------FTLEVERA----LRVLDGAICLFDSVAG-----------VEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (608)
Q Consensus 168 ----------f~~~~~~~----l~~~D~~i~VvDa~~g-----------~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (608)
|...+..+ +..+|++++|+|+... ....+.+++..+...++|+++|+||+|+...
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~ 145 (201)
T PRK04213 66 SGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKN 145 (201)
T ss_pred cccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCc
Confidence 33322223 3456899999999642 1234566777777789999999999998654
No 130
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.70 E-value=2.7e-16 Score=180.73 Aligned_cols=119 Identities=22% Similarity=0.341 Sum_probs=97.4
Q ss_pred CCCCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCC
Q 007325 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG 164 (608)
Q Consensus 85 ~~~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 164 (608)
......++|+|+|++|+|||||+|+|+.... .. .+...|+|.+.......|++..+++|||||
T Consensus 270 ~~~~~~~~V~IvG~~nvGKSSL~n~l~~~~~---~i--------------v~~~pGvT~d~~~~~~~~~~~~~~liDT~G 332 (712)
T PRK09518 270 AGPKAVGVVAIVGRPNVGKSTLVNRILGRRE---AV--------------VEDTPGVTRDRVSYDAEWAGTDFKLVDTGG 332 (712)
T ss_pred cccccCcEEEEECCCCCCHHHHHHHHhCCCc---ee--------------ecCCCCeeEEEEEEEEEECCEEEEEEeCCC
Confidence 3455678999999999999999999962211 00 122357788887788889999999999999
Q ss_pred CCC--------chHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcC
Q 007325 165 HVD--------FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (608)
Q Consensus 165 ~~d--------f~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~ 220 (608)
+.. +...+..+++.+|++|+|+|+.++.......+++.+...++|+++|+||+|+.
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~ 396 (712)
T PRK09518 333 WEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQ 396 (712)
T ss_pred cCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccc
Confidence 764 45566778899999999999999998888888888989999999999999974
No 131
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.70 E-value=1.4e-16 Score=169.51 Aligned_cols=120 Identities=19% Similarity=0.251 Sum_probs=85.9
Q ss_pred cCCCCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC-eeEEEEeC
Q 007325 84 VIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK-HRINIIDT 162 (608)
Q Consensus 84 ~~~~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~-~~i~liDT 162 (608)
....+.+..|+|||.+|||||||+|+|. +....+. ...++|+......+.+.+ ..+.|+||
T Consensus 153 ~lelk~iadValVG~PNaGKSTLln~Lt---~~k~~vs---------------~~p~TT~~p~~Giv~~~~~~~i~~vDt 214 (390)
T PRK12298 153 KLELKLLADVGLLGLPNAGKSTFIRAVS---AAKPKVA---------------DYPFTTLVPNLGVVRVDDERSFVVADI 214 (390)
T ss_pred EEeeeccccEEEEcCCCCCHHHHHHHHh---CCccccc---------------CCCCCccCcEEEEEEeCCCcEEEEEeC
Confidence 3456667899999999999999999996 2211111 123557778888887765 46999999
Q ss_pred CCCCC-------chHHHHHHHHhcCeEEEEEcCCC----CCchhHHHHHHHHHh-----cCCCEEEEEeCCCcCC
Q 007325 163 PGHVD-------FTLEVERALRVLDGAICLFDSVA----GVEPQSETVWRQADK-----YGVPRICFVNKMDRLG 221 (608)
Q Consensus 163 PG~~d-------f~~~~~~~l~~~D~~i~VvDa~~----g~~~~t~~~~~~~~~-----~~~p~ivviNK~D~~~ 221 (608)
||+.+ ....+.+.+..+|++++|||++. ....+...+++++.. .+.|.++|+||+|+..
T Consensus 215 PGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~ 289 (390)
T PRK12298 215 PGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLD 289 (390)
T ss_pred CCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCC
Confidence 99865 34456678899999999999872 122233344455544 3689999999999854
No 132
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.70 E-value=3e-16 Score=148.68 Aligned_cols=109 Identities=17% Similarity=0.073 Sum_probs=76.9
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchHH
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (608)
+|+++|..|+|||||+++|... .. .++ ..|+......+.+.+..+.+|||||+.+|...
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~--~~------------~~~-------~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~ 59 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQD--EF------------MQP-------IPTIGFNVETVEYKNLKFTIWDVGGKHKLRPL 59 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcC--CC------------CCc-------CCcCceeEEEEEECCEEEEEEECCCChhcchH
Confidence 4789999999999999999621 10 000 01332333345667889999999999999888
Q ss_pred HHHHHHhcCeEEEEEcCCCCCch-hHHHHHHHHH----hcCCCEEEEEeCCCcCC
Q 007325 172 VERALRVLDGAICLFDSVAGVEP-QSETVWRQAD----KYGVPRICFVNKMDRLG 221 (608)
Q Consensus 172 ~~~~l~~~D~~i~VvDa~~g~~~-~t~~~~~~~~----~~~~p~ivviNK~D~~~ 221 (608)
+..+++.+|++++|+|+++.... .....+..+. ..+.|+++|+||+|+..
T Consensus 60 ~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 114 (169)
T cd04158 60 WKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG 114 (169)
T ss_pred HHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc
Confidence 88999999999999999864221 1122222222 23489999999999854
No 133
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.70 E-value=3.5e-16 Score=146.76 Aligned_cols=109 Identities=18% Similarity=0.149 Sum_probs=76.2
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchHH
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (608)
+|+++|..|+|||||++++.. +... ++.+ |+......+......+.+|||||+..|...
T Consensus 2 kv~~~G~~~~GKTsli~~l~~--~~~~------------~~~p-------t~g~~~~~~~~~~~~~~l~D~~G~~~~~~~ 60 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKL--GEIV------------TTIP-------TIGFNVETVEYKNISFTVWDVGGQDKIRPL 60 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhc--CCCc------------ccCC-------CCCcceEEEEECCEEEEEEECCCCHhHHHH
Confidence 589999999999999999952 2110 0111 221222234456788999999999999888
Q ss_pred HHHHHHhcCeEEEEEcCCCCCc-hhHHHHHHHHHh----cCCCEEEEEeCCCcCC
Q 007325 172 VERALRVLDGAICLFDSVAGVE-PQSETVWRQADK----YGVPRICFVNKMDRLG 221 (608)
Q Consensus 172 ~~~~l~~~D~~i~VvDa~~g~~-~~t~~~~~~~~~----~~~p~ivviNK~D~~~ 221 (608)
+..+++.+|++|+|+|+++... .+..+.|..+.. .+.|+++++||+|+..
T Consensus 61 ~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 115 (159)
T cd04150 61 WRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPN 115 (159)
T ss_pred HHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCC
Confidence 8899999999999999986321 112223333321 3589999999999854
No 134
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.70 E-value=3.7e-16 Score=149.06 Aligned_cols=112 Identities=19% Similarity=0.122 Sum_probs=79.5
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCch
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~ 169 (608)
..+|+++|..|+|||||++++.. +... ++. .|+......+.+.+..+.+|||||+.+|.
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~--~~~~------------~~~-------~t~~~~~~~~~~~~~~l~l~D~~G~~~~~ 71 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKL--GESV------------TTI-------PTIGFNVETVTYKNISFTVWDVGGQDKIR 71 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhc--CCCC------------CcC-------CccccceEEEEECCEEEEEEECCCChhhH
Confidence 36899999999999999999952 2110 010 02222233445577899999999999999
Q ss_pred HHHHHHHHhcCeEEEEEcCCCCCc-hhHHHHHHHHH----hcCCCEEEEEeCCCcCCC
Q 007325 170 LEVERALRVLDGAICLFDSVAGVE-PQSETVWRQAD----KYGVPRICFVNKMDRLGA 222 (608)
Q Consensus 170 ~~~~~~l~~~D~~i~VvDa~~g~~-~~t~~~~~~~~----~~~~p~ivviNK~D~~~~ 222 (608)
..+..+++.+|++|+|+|+++... ....+.|..+. ..++|+++|+||+|+.+.
T Consensus 72 ~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 129 (175)
T smart00177 72 PLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA 129 (175)
T ss_pred HHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC
Confidence 988999999999999999986422 12233333332 236899999999998643
No 135
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.70 E-value=3.5e-16 Score=146.53 Aligned_cols=114 Identities=18% Similarity=0.195 Sum_probs=78.3
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchHH
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (608)
+|+++|++|+|||||+++|+......... ...+.........+......+++|||||+.+|...
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~ 65 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQ----------------HTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSV 65 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCC----------------CceeeeEEEEEEEECCEEEEEEEEECcchHHHHHh
Confidence 78999999999999999997321110000 00111222222222223467899999999999988
Q ss_pred HHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHH---HhcCCCEEEEEeCCCcCC
Q 007325 172 VERALRVLDGAICLFDSVAGVEPQSETVW-RQA---DKYGVPRICFVNKMDRLG 221 (608)
Q Consensus 172 ~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~---~~~~~p~ivviNK~D~~~ 221 (608)
....++.+|++|+|+|+++.........| ..+ ...++|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 119 (161)
T cd04113 66 TRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLAD 119 (161)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcch
Confidence 88999999999999999986554443334 222 235789999999999753
No 136
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.69 E-value=4.5e-16 Score=152.07 Aligned_cols=136 Identities=15% Similarity=0.126 Sum_probs=83.9
Q ss_pred cchhHHHHhhhhhhccCCCCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEE
Q 007325 69 RQFSVFAMAAEESKRVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAAT 148 (608)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~ 148 (608)
+++......+...+.....+..++|+|+|++|||||||+++|+.... . . ....+.|+.....
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~I~iiG~~g~GKStLl~~l~~~~~--~-~---------------~~~~~~t~~~~~~ 81 (204)
T cd01878 20 RELEKVKKQRELQRRRRKRSGIPTVALVGYTNAGKSTLFNALTGADV--Y-A---------------EDQLFATLDPTTR 81 (204)
T ss_pred HHHHHHHHhHHHHHHhhhhcCCCeEEEECCCCCCHHHHHHHHhcchh--c-c---------------CCccceeccceeE
Confidence 34444434333333333345568999999999999999999963210 0 0 0001224444445
Q ss_pred EEeecCe-eEEEEeCCCCCCc-hH-------HHHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHH---HhcCCCEEEEEe
Q 007325 149 TTYWNKH-RINIIDTPGHVDF-TL-------EVERALRVLDGAICLFDSVAGVEPQSETVW-RQA---DKYGVPRICFVN 215 (608)
Q Consensus 149 ~~~~~~~-~i~liDTPG~~df-~~-------~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~---~~~~~p~ivviN 215 (608)
.+.+.+. .+.+|||||+.+. .. .....+..+|++++|+|++++........| +.+ ...++|+++|+|
T Consensus 82 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~N 161 (204)
T cd01878 82 RLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLN 161 (204)
T ss_pred EEEecCCceEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEE
Confidence 5555554 8999999998542 11 122335678999999999976544433222 222 234689999999
Q ss_pred CCCcCCC
Q 007325 216 KMDRLGA 222 (608)
Q Consensus 216 K~D~~~~ 222 (608)
|+|+...
T Consensus 162 K~Dl~~~ 168 (204)
T cd01878 162 KIDLLDD 168 (204)
T ss_pred ccccCCh
Confidence 9998643
No 137
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.69 E-value=2.6e-16 Score=170.32 Aligned_cols=135 Identities=21% Similarity=0.302 Sum_probs=93.0
Q ss_pred cchhHHHHhhhhhhccCCCCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEE
Q 007325 69 RQFSVFAMAAEESKRVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAAT 148 (608)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~ 148 (608)
+.|...+...++..-....+-+..|+|||.+|||||||+|+|. +....+. | ..++|+.....
T Consensus 138 p~~~~~G~~Ge~~~~~leLk~~adV~LVG~PNAGKSTLln~Ls---~akpkIa---------d------ypfTTl~P~lG 199 (500)
T PRK12296 138 PGFALLGEPGEERDLVLELKSVADVGLVGFPSAGKSSLISALS---AAKPKIA---------D------YPFTTLVPNLG 199 (500)
T ss_pred CccccCCCCCceEEEEEEecccceEEEEEcCCCCHHHHHHHHh---cCCcccc---------c------cCcccccceEE
Confidence 4455555555544455667778999999999999999999995 2221111 1 13558888888
Q ss_pred EEeecCeeEEEEeCCCCCC-------chHHHHHHHHhcCeEEEEEcCCCC---Cch--hHHHHHHHH-------------
Q 007325 149 TTYWNKHRINIIDTPGHVD-------FTLEVERALRVLDGAICLFDSVAG---VEP--QSETVWRQA------------- 203 (608)
Q Consensus 149 ~~~~~~~~i~liDTPG~~d-------f~~~~~~~l~~~D~~i~VvDa~~g---~~~--~t~~~~~~~------------- 203 (608)
.+.+.+.++.|+||||+.+ ...+..+.+..+|++|+|||++.. ..+ ....+.+.+
T Consensus 200 vv~~~~~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~ 279 (500)
T PRK12296 200 VVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGL 279 (500)
T ss_pred EEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchh
Confidence 8888889999999999864 223456677889999999999741 111 111122222
Q ss_pred -HhcCCCEEEEEeCCCcCC
Q 007325 204 -DKYGVPRICFVNKMDRLG 221 (608)
Q Consensus 204 -~~~~~p~ivviNK~D~~~ 221 (608)
...++|+++|+||+|+..
T Consensus 280 ~~l~~kP~IVVlNKiDL~d 298 (500)
T PRK12296 280 GDLAERPRLVVLNKIDVPD 298 (500)
T ss_pred hhhcCCCEEEEEECccchh
Confidence 124689999999999853
No 138
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.69 E-value=7.8e-16 Score=147.67 Aligned_cols=112 Identities=19% Similarity=0.093 Sum_probs=79.0
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCch
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~ 169 (608)
..+|+++|..|+|||||++++.. +.... + . .|+......+.+++..+++|||||+..|.
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~--~~~~~------------~---~----pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~ 75 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKL--GEIVT------------T---I----PTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHcc--CCCcc------------c---c----CCcceeEEEEEECCEEEEEEECCCCHHHH
Confidence 35899999999999999999952 11100 0 0 02222233456678899999999999999
Q ss_pred HHHHHHHHhcCeEEEEEcCCCCCchh-HHHHHHHHH----hcCCCEEEEEeCCCcCCC
Q 007325 170 LEVERALRVLDGAICLFDSVAGVEPQ-SETVWRQAD----KYGVPRICFVNKMDRLGA 222 (608)
Q Consensus 170 ~~~~~~l~~~D~~i~VvDa~~g~~~~-t~~~~~~~~----~~~~p~ivviNK~D~~~~ 222 (608)
..+...++.+|++|+|+|+++..... ....+.... ..++|+++|+||+|+...
T Consensus 76 ~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~ 133 (181)
T PLN00223 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
T ss_pred HHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC
Confidence 88899999999999999999643221 112222221 136899999999998653
No 139
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.69 E-value=4.6e-16 Score=149.48 Aligned_cols=112 Identities=22% Similarity=0.237 Sum_probs=76.3
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEE---eecCeeEEEEeCCCCCC
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTT---YWNKHRINIIDTPGHVD 167 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~---~~~~~~i~liDTPG~~d 167 (608)
-.|+++|++|+|||||++++++.... ... ...|.+.. ...+ .+.+..+++|||||+.+
T Consensus 4 ~kv~~vG~~~~GKTsli~~~~~~~~~----~~~-------------~t~~~~~~--~~~~~~~~~~~~~l~l~Dt~G~~~ 64 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFNEFV----NTV-------------PTKGFNTE--KIKVSLGNSKGITFHFWDVGGQEK 64 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCcC----CcC-------------Ccccccee--EEEeeccCCCceEEEEEECCCcHh
Confidence 36999999999999999999632211 000 00111111 1122 22457899999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCCCchhH-----HHHHHHHHhcCCCEEEEEeCCCcCC
Q 007325 168 FTLEVERALRVLDGAICLFDSVAGVEPQS-----ETVWRQADKYGVPRICFVNKMDRLG 221 (608)
Q Consensus 168 f~~~~~~~l~~~D~~i~VvDa~~g~~~~t-----~~~~~~~~~~~~p~ivviNK~D~~~ 221 (608)
|...+...++.+|++|+|+|+++...... .+++......++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~ 123 (183)
T cd04152 65 LRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN 123 (183)
T ss_pred HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc
Confidence 98888888999999999999987532221 1222333446799999999999753
No 140
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.69 E-value=1.1e-15 Score=142.55 Aligned_cols=114 Identities=19% Similarity=0.174 Sum_probs=80.7
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCch
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~ 169 (608)
...|+++|.+|+|||||+|+|+.. ...... . ....+.......+...+..+.+|||||+.+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~---~~~~~~--~------------~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 65 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ---KISIVS--P------------KPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPK 65 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC---ceEecc--C------------CCCceeceEEEEEEcCCeEEEEEECCCCCcch
Confidence 358999999999999999999621 111000 0 01112222223334456789999999987643
Q ss_pred --------HHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcC
Q 007325 170 --------LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (608)
Q Consensus 170 --------~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~ 220 (608)
......+..+|++++|+|+++........+++.+...+.|.++|+||+|+.
T Consensus 66 ~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 124 (168)
T cd04163 66 KKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLV 124 (168)
T ss_pred HHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhcc
Confidence 234556788899999999998766666667777777889999999999986
No 141
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.69 E-value=5.1e-16 Score=145.80 Aligned_cols=111 Identities=17% Similarity=0.185 Sum_probs=74.2
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeec--CeeEEEEeCCCCCCch
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGHVDFT 169 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG~~df~ 169 (608)
+|+++|.+|+|||||+++++..... . ++.+. +.......+..+ ...+.+|||||+.+|.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~--~-----------~~~~t------~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~ 62 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFV--D-----------DYDPT------IEDSYRKQIEIDGEVCLLDILDTAGQEEFS 62 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC--c-----------ccCCc------hhhhEEEEEEECCEEEEEEEEECCCcccch
Confidence 6899999999999999999732210 0 00000 000001122222 3578899999999999
Q ss_pred HHHHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHH----HhcCCCEEEEEeCCCcCC
Q 007325 170 LEVERALRVLDGAICLFDSVAGVEPQSETVW-RQA----DKYGVPRICFVNKMDRLG 221 (608)
Q Consensus 170 ~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~----~~~~~p~ivviNK~D~~~ 221 (608)
......++.+|++++|+|+++.........| ..+ ...++|+++|+||+|+..
T Consensus 63 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~ 119 (164)
T smart00173 63 AMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLES 119 (164)
T ss_pred HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 9999999999999999999874332222222 222 224789999999999754
No 142
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.69 E-value=4.2e-16 Score=166.80 Aligned_cols=120 Identities=18% Similarity=0.219 Sum_probs=84.9
Q ss_pred ccCCCCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeec-CeeEEEEe
Q 007325 83 RVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-KHRINIID 161 (608)
Q Consensus 83 ~~~~~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~-~~~i~liD 161 (608)
-....+-+..|+|||.+|||||||+++|. +...++.. ..++|+......+.+. +..++++|
T Consensus 151 ~~lelk~~adVglVG~pNaGKSTLLn~Lt---~ak~kIa~---------------ypfTTl~PnlG~v~~~~~~~~~laD 212 (424)
T PRK12297 151 LRLELKLLADVGLVGFPNVGKSTLLSVVS---NAKPKIAN---------------YHFTTLVPNLGVVETDDGRSFVMAD 212 (424)
T ss_pred EEEeecccCcEEEEcCCCCCHHHHHHHHH---cCCCcccc---------------CCcceeceEEEEEEEeCCceEEEEE
Confidence 44556677899999999999999999996 22211111 1344777777777776 78999999
Q ss_pred CCCCCC-------chHHHHHHHHhcCeEEEEEcCCCC--Cc--hhHHHHHHHHHh-----cCCCEEEEEeCCCcC
Q 007325 162 TPGHVD-------FTLEVERALRVLDGAICLFDSVAG--VE--PQSETVWRQADK-----YGVPRICFVNKMDRL 220 (608)
Q Consensus 162 TPG~~d-------f~~~~~~~l~~~D~~i~VvDa~~g--~~--~~t~~~~~~~~~-----~~~p~ivviNK~D~~ 220 (608)
|||+.. +.....+.+..+|++|+|||+++. .. .....+.+.+.. .++|+++|+||+|+.
T Consensus 213 ~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~ 287 (424)
T PRK12297 213 IPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLP 287 (424)
T ss_pred CCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCc
Confidence 999864 234556667779999999999742 12 222333344443 378999999999974
No 143
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.69 E-value=9.4e-16 Score=143.55 Aligned_cols=112 Identities=16% Similarity=0.271 Sum_probs=77.1
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEee----cCeeEEEEeCCCCCC
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW----NKHRINIIDTPGHVD 167 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~----~~~~i~liDTPG~~d 167 (608)
+|+++|.+|+|||||++++..... . . ++ .+.+..+.....+.+ ....+++|||||+.+
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~--~--~---------~~-----~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 63 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIF--T--K---------DY-----KKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEE 63 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC--C--C---------CC-----CCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHH
Confidence 689999999999999999962211 0 0 00 011111211122222 246799999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHh---cCCCEEEEEeCCCcCC
Q 007325 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK---YGVPRICFVNKMDRLG 221 (608)
Q Consensus 168 f~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~---~~~p~ivviNK~D~~~ 221 (608)
|......+++.+|++++|+|+++.........|..... .++|+++|+||+|+..
T Consensus 64 ~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 120 (162)
T cd04106 64 FDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLD 120 (162)
T ss_pred HHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhccc
Confidence 99989999999999999999987544444444432222 4799999999999753
No 144
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.68 E-value=8.3e-16 Score=144.10 Aligned_cols=114 Identities=15% Similarity=0.112 Sum_probs=76.9
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchHH
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (608)
+|+++|++|+|||||+++|+...- ... .....|.+.......+...+..+.+|||||+.+|...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~--~~~--------------~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~ 66 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKNEF--SEN--------------QESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSL 66 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC--CCC--------------CCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHH
Confidence 799999999999999999972211 000 0111122232333333334567899999999998888
Q ss_pred HHHHHHhcCeEEEEEcCCCCCchhHH-HHHHHHHh---cCCCEEEEEeCCCcCC
Q 007325 172 VERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK---YGVPRICFVNKMDRLG 221 (608)
Q Consensus 172 ~~~~l~~~D~~i~VvDa~~g~~~~t~-~~~~~~~~---~~~p~ivviNK~D~~~ 221 (608)
....++.+|++|+|+|+++.-..... ..+..+.. .++|+++++||+|+..
T Consensus 67 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 120 (163)
T cd01860 67 APMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLES 120 (163)
T ss_pred HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 88889999999999999864332222 22233333 3578999999999753
No 145
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.68 E-value=8e-16 Score=147.74 Aligned_cols=110 Identities=18% Similarity=0.135 Sum_probs=77.2
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchH
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~ 170 (608)
.+|+++|.+|+|||||++++.. +... ++. .|+......+...+..+.+|||||+.+|..
T Consensus 18 ~kv~lvG~~~vGKTsli~~~~~--~~~~------------~~~-------~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~ 76 (182)
T PTZ00133 18 VRILMVGLDAAGKTTILYKLKL--GEVV------------TTI-------PTIGFNVETVEYKNLKFTMWDVGGQDKLRP 76 (182)
T ss_pred cEEEEEcCCCCCHHHHHHHHhc--CCcc------------ccC-------CccccceEEEEECCEEEEEEECCCCHhHHH
Confidence 5799999999999999999951 2110 000 022222234556788999999999999998
Q ss_pred HHHHHHHhcCeEEEEEcCCCCCch-hHHHHHHHHHh----cCCCEEEEEeCCCcCC
Q 007325 171 EVERALRVLDGAICLFDSVAGVEP-QSETVWRQADK----YGVPRICFVNKMDRLG 221 (608)
Q Consensus 171 ~~~~~l~~~D~~i~VvDa~~g~~~-~t~~~~~~~~~----~~~p~ivviNK~D~~~ 221 (608)
.+..+++.+|++|+|+|+++.-.. .....+..... .++|+++|+||.|+..
T Consensus 77 ~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 132 (182)
T PTZ00133 77 LWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPN 132 (182)
T ss_pred HHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCC
Confidence 889999999999999999853211 11222332221 3689999999999864
No 146
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.68 E-value=1.1e-15 Score=141.66 Aligned_cols=110 Identities=19% Similarity=0.175 Sum_probs=77.9
Q ss_pred EEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchHHH
Q 007325 93 IGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEV 172 (608)
Q Consensus 93 i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~ 172 (608)
|+++|++|+|||||+++|..... ..++.+ |+......+..++..+.+|||||+.+|...+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~-------------~~~~~~-------t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~ 61 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQF-------------SEDTIP-------TVGFNMRKVTKGNVTLKVWDLGGQPRFRSMW 61 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCC-------------CcCccC-------CCCcceEEEEECCEEEEEEECCCCHhHHHHH
Confidence 79999999999999999962110 001111 2223333455567889999999999999999
Q ss_pred HHHHHhcCeEEEEEcCCCCCc-hhHHHHHHHHH----hcCCCEEEEEeCCCcCCC
Q 007325 173 ERALRVLDGAICLFDSVAGVE-PQSETVWRQAD----KYGVPRICFVNKMDRLGA 222 (608)
Q Consensus 173 ~~~l~~~D~~i~VvDa~~g~~-~~t~~~~~~~~----~~~~p~ivviNK~D~~~~ 222 (608)
..+++.+|++++|+|+.+... .+....+..+. ..++|+++|+||+|+...
T Consensus 62 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 116 (159)
T cd04159 62 ERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGA 116 (159)
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC
Confidence 999999999999999986322 22223333332 257899999999997643
No 147
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.68 E-value=5.4e-16 Score=146.38 Aligned_cols=116 Identities=21% Similarity=0.155 Sum_probs=81.0
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCCCC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGH 165 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~ 165 (608)
+..++|+++|++|+|||||+++|.. +..... ....++.+.....+.+.+ ..+.+|||||+
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~--~~~~~~----------------~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~ 66 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQ--GLFPPG----------------QGATIGVDFMIKTVEIKGEKIKLQIWDTAGQ 66 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHh--CCCCCC----------------CCCceeeEEEEEEEEECCEEEEEEEEECCCc
Confidence 3468999999999999999999962 111000 001122233334455555 45788999999
Q ss_pred CCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHH----HHHHhcCCCEEEEEeCCCcCC
Q 007325 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW----RQADKYGVPRICFVNKMDRLG 221 (608)
Q Consensus 166 ~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~----~~~~~~~~p~ivviNK~D~~~ 221 (608)
.+|......+++.+|++++|+|+.++........| +.....++|+++|+||+|+..
T Consensus 67 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~ 126 (169)
T cd04114 67 ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAE 126 (169)
T ss_pred HHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 99999989999999999999999875443333333 222334789999999999753
No 148
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=99.68 E-value=2.1e-16 Score=132.33 Aligned_cols=83 Identities=33% Similarity=0.596 Sum_probs=76.6
Q ss_pred eEEEEEEeeecCCCceEEEEEEecceeCCCCEEEeCCCC---ceeecceEEEeecCceeecCeeecCCEEEEcCCCcccc
Q 007325 390 FAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKG---KKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTIT 466 (608)
Q Consensus 390 ~~~~V~K~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~---~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~ 466 (608)
|.++|||+..|++.|+++|+|||+|+|++||+|++...+ ..+++++|+.++|.+..+++++.||||+++.|++++.+
T Consensus 1 ~~~~vfk~~~d~~~g~i~~~Rv~sG~l~~g~~v~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aG~I~~i~gl~~~~~ 80 (86)
T cd03691 1 LQMLVTTLDYDDYVGRIAIGRIFRGTVKVGQQVAVVKRDGKIEKAKITKLFGFEGLKRVEVEEAEAGDIVAIAGIEDITI 80 (86)
T ss_pred CeEEEEEeEecCCCCeEEEEEEEeCEEcCCCEEEEEcCCCCEEEEEEeeEeeeeCCCeeECcEECCCCEEEEECCCCCcc
Confidence 478999999999999999999999999999999977653 35789999999999999999999999999999999999
Q ss_pred cceecc
Q 007325 467 GETLCD 472 (608)
Q Consensus 467 GdtL~~ 472 (608)
||||++
T Consensus 81 Gdtl~~ 86 (86)
T cd03691 81 GDTICD 86 (86)
T ss_pred cceecC
Confidence 999963
No 149
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=99.68 E-value=1.9e-16 Score=132.48 Aligned_cols=82 Identities=26% Similarity=0.395 Sum_probs=74.5
Q ss_pred eEEEEEEeeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCeeecCCEEEEc-C---CCccc
Q 007325 390 FAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALA-G---LKDTI 465 (608)
Q Consensus 390 ~~~~V~K~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~-g---l~~~~ 465 (608)
|.++|||+.+|++.|+++|+|||+|+|++||.|++...++++++++|+. ++.+..+++++.||||+++. | ++++.
T Consensus 1 ~~~~Vfk~~~d~~~G~i~~~Rv~sG~l~~~~~v~~~~~~~~~~i~~l~~-~~~~~~~~~~~~aGdI~~v~~g~~~l~~~~ 79 (86)
T cd03699 1 LRALIFDSWYDPYRGVIALVRVFDGTLKKGDKIRFMSTGKEYEVEEVGI-FRPEMTPTDELSAGQVGYIIAGIKTVKDAR 79 (86)
T ss_pred CEEEEEEeeccCCCCEEEEEEEEcCEEcCCCEEEEecCCCeEEEEEEEE-ECCCccCCceECCCCEEEEEccccccCccc
Confidence 5789999999999999999999999999999999988887899999994 57778999999999999995 3 67789
Q ss_pred ccceecc
Q 007325 466 TGETLCD 472 (608)
Q Consensus 466 ~GdtL~~ 472 (608)
+|||||+
T Consensus 80 ~Gdtl~~ 86 (86)
T cd03699 80 VGDTITL 86 (86)
T ss_pred cccEeeC
Confidence 9999974
No 150
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.68 E-value=5e-16 Score=148.64 Aligned_cols=120 Identities=18% Similarity=0.245 Sum_probs=85.3
Q ss_pred ccCCCCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeC
Q 007325 83 RVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDT 162 (608)
Q Consensus 83 ~~~~~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDT 162 (608)
.+.+..+.++|+|+|++|+|||||+|+|+.... . ..+ ....|.|........ + ..+.+|||
T Consensus 11 ~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~-~---~~~------------~~~~~~t~~~~~~~~--~-~~~~liDt 71 (179)
T TIGR03598 11 KQLPPDDGPEIAFAGRSNVGKSSLINALTNRKK-L---ART------------SKTPGRTQLINFFEV--N-DGFRLVDL 71 (179)
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCC-c---ccc------------cCCCCcceEEEEEEe--C-CcEEEEeC
Confidence 445556778999999999999999999963211 0 000 001233444333322 2 37999999
Q ss_pred CCCCC----------chHHHHHHHH---hcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCC
Q 007325 163 PGHVD----------FTLEVERALR---VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (608)
Q Consensus 163 PG~~d----------f~~~~~~~l~---~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~ 221 (608)
||+.+ |...+..+++ .+|++++|+|+..+....+..+++.+...++|+++|+||+|+..
T Consensus 72 pG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~ 143 (179)
T TIGR03598 72 PGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLK 143 (179)
T ss_pred CCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCC
Confidence 99742 3333344444 35899999999999998888888888889999999999999864
No 151
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.68 E-value=7.8e-16 Score=168.06 Aligned_cols=113 Identities=25% Similarity=0.292 Sum_probs=92.0
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCC---
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD--- 167 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d--- 167 (608)
++|+|+|++|+|||||+|+|+.... .. .....|+|.+.....+.|++..+++|||||+.+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~---~~--------------v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~ 64 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRD---AI--------------VADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDD 64 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc---ee--------------eCCCCCCcccceEEEEEECCcEEEEEECCCCCCcch
Confidence 5899999999999999999962211 00 111246677777778888899999999999988
Q ss_pred -----chHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcC
Q 007325 168 -----FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (608)
Q Consensus 168 -----f~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~ 220 (608)
+...+..+++.+|++|+|+|+.++.......+.+.+...++|+++|+||+|..
T Consensus 65 ~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~ 122 (435)
T PRK00093 65 GFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGP 122 (435)
T ss_pred hHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCc
Confidence 33445668899999999999999988888888888888999999999999964
No 152
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.68 E-value=7.3e-16 Score=146.16 Aligned_cols=114 Identities=21% Similarity=0.186 Sum_probs=79.5
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 167 (608)
.+..+|+++|++|+|||||+++|... ... .. ..|.......+.+.+..+.+|||||+.+
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~---~~~--~~----------------~~t~g~~~~~i~~~~~~~~~~D~~G~~~ 70 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASE---DIS--HI----------------TPTQGFNIKTVQSDGFKLNVWDIGGQRA 70 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcC---CCc--cc----------------CCCCCcceEEEEECCEEEEEEECCCCHH
Confidence 33578999999999999999999521 000 00 0022222234556788999999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCCCch-hHHHHH----HHHHhcCCCEEEEEeCCCcCCC
Q 007325 168 FTLEVERALRVLDGAICLFDSVAGVEP-QSETVW----RQADKYGVPRICFVNKMDRLGA 222 (608)
Q Consensus 168 f~~~~~~~l~~~D~~i~VvDa~~g~~~-~t~~~~----~~~~~~~~p~ivviNK~D~~~~ 222 (608)
|...+...++.+|++++|+|+.+.... .....+ +.....++|+++++||+|+...
T Consensus 71 ~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 130 (173)
T cd04155 71 IRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATA 130 (173)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccC
Confidence 988888889999999999999863221 112222 2223457999999999998653
No 153
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.68 E-value=8.4e-16 Score=142.54 Aligned_cols=112 Identities=18% Similarity=0.198 Sum_probs=82.7
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchHH
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (608)
+|+++|++|+|||||+++|+..... .. ...+++|.......+.+.+..+++|||||+.++...
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~~~--~~---------------~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~ 65 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRA--IV---------------SDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDE 65 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCceE--ec---------------cCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcch
Confidence 7999999999999999999622110 00 012355666556667777889999999999876432
Q ss_pred --------HHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCC
Q 007325 172 --------VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (608)
Q Consensus 172 --------~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (608)
....+..+|++++|+|+.+.........+.. ..++|+++|+||+|+...
T Consensus 66 ~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~~ 122 (157)
T cd04164 66 IEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLPD 122 (157)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCCc
Confidence 3456778999999999997666655555544 568999999999998643
No 154
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.68 E-value=1.3e-15 Score=142.13 Aligned_cols=111 Identities=16% Similarity=0.195 Sum_probs=74.3
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCCCCCCch
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFT 169 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~df~ 169 (608)
+|+++|.+|+|||||+++|+.... .. ... . +. +.+ ....+..++ ..+++|||||+.+|.
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~~~--~~--~~~-~-t~----------~~~---~~~~~~~~~~~~~~~i~Dt~G~~~~~ 63 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQNHF--VD--EYD-P-TI----------EDS---YRKQVVIDGETCLLDILDTAGQEEYS 63 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--cC--CcC-C-cc----------hhe---EEEEEEECCEEEEEEEEECCCCcchH
Confidence 689999999999999999973211 00 000 0 00 001 111222333 458899999999999
Q ss_pred HHHHHHHHhcCeEEEEEcCCCCCchhHHH-HHHHHH----hcCCCEEEEEeCCCcCC
Q 007325 170 LEVERALRVLDGAICLFDSVAGVEPQSET-VWRQAD----KYGVPRICFVNKMDRLG 221 (608)
Q Consensus 170 ~~~~~~l~~~D~~i~VvDa~~g~~~~t~~-~~~~~~----~~~~p~ivviNK~D~~~ 221 (608)
.....+++.+|++++|+|.++........ .+..+. ..++|+++|+||+|+..
T Consensus 64 ~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~ 120 (162)
T cd04138 64 AMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA 120 (162)
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 99999999999999999998643322222 222222 34789999999999753
No 155
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.67 E-value=5.7e-16 Score=152.63 Aligned_cols=122 Identities=18% Similarity=0.202 Sum_probs=91.1
Q ss_pred ccCCCCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeC
Q 007325 83 RVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDT 162 (608)
Q Consensus 83 ~~~~~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDT 162 (608)
.+.+..+..+||+||.||+|||||+|.++... +. +..++..+|.....+.++-+..++.|.||
T Consensus 65 de~e~~k~L~vavIG~PNvGKStLtN~mig~k--v~---------------~vS~K~~TTr~~ilgi~ts~eTQlvf~DT 127 (379)
T KOG1423|consen 65 DEEEAQKSLYVAVIGAPNVGKSTLTNQMIGQK--VS---------------AVSRKVHTTRHRILGIITSGETQLVFYDT 127 (379)
T ss_pred CchhcceEEEEEEEcCCCcchhhhhhHhhCCc--cc---------------cccccccceeeeeeEEEecCceEEEEecC
Confidence 33445678899999999999999999997211 11 11223345777788888889999999999
Q ss_pred CCCCC------------chHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHh-cCCCEEEEEeCCCcCC
Q 007325 163 PGHVD------------FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK-YGVPRICFVNKMDRLG 221 (608)
Q Consensus 163 PG~~d------------f~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~-~~~p~ivviNK~D~~~ 221 (608)
||.+. +......++..+|.+++|+|+++.-....-.++..+.+ .++|-++|+||+|...
T Consensus 128 PGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k 199 (379)
T KOG1423|consen 128 PGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLK 199 (379)
T ss_pred CcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcch
Confidence 99653 44566778999999999999996433334445566654 4799999999999764
No 156
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.67 E-value=1e-15 Score=144.21 Aligned_cols=115 Identities=18% Similarity=0.141 Sum_probs=75.3
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchH
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~ 170 (608)
.+|+++|.+|+|||||+++|+...- .. .+.+ ..|++..............+.+|||||+.+|..
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~--~~-----------~~~~---t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~ 65 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSF--TS-----------AFVS---TVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRT 65 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--CC-----------CCCC---ceeeEEEEEEEEECCEEEEEEEEECCChHHHHH
Confidence 4799999999999999999972211 00 0000 011111111111111236789999999999998
Q ss_pred HHHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHHHh---cCCCEEEEEeCCCcCC
Q 007325 171 EVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 221 (608)
Q Consensus 171 ~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~~~---~~~p~ivviNK~D~~~ 221 (608)
.....++.+|++++|+|.++........-| +.+.. .+.|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~ 120 (165)
T cd01865 66 ITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMED 120 (165)
T ss_pred HHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCc
Confidence 889999999999999999864332222222 23332 3678999999999854
No 157
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.67 E-value=2.3e-15 Score=140.81 Aligned_cols=111 Identities=22% Similarity=0.287 Sum_probs=79.2
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCCCCCCch
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFT 169 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~df~ 169 (608)
+|+++|++|+|||||+++|+...... +...+++.+.....+.+++ ..+++|||||+..|.
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~ 63 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDN------------------QYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFR 63 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCc------------------cCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHH
Confidence 79999999999999999997221111 1112334444444444444 468999999999999
Q ss_pred HHHHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHH-Hhc--CCCEEEEEeCCCcC
Q 007325 170 LEVERALRVLDGAICLFDSVAGVEPQSETVW-RQA-DKY--GVPRICFVNKMDRL 220 (608)
Q Consensus 170 ~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~-~~~--~~p~ivviNK~D~~ 220 (608)
......++.+|++++|+|.++.........| ..+ ... ++|+++++||+|+.
T Consensus 64 ~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~ 118 (161)
T cd01861 64 SLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLS 118 (161)
T ss_pred HHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhcc
Confidence 8889999999999999999875444333333 222 233 48999999999984
No 158
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.67 E-value=1.6e-15 Score=142.03 Aligned_cols=112 Identities=18% Similarity=0.156 Sum_probs=78.7
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCCCCCCch
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFT 169 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~df~ 169 (608)
+|+++|.+|+|||||+++|+...- . ....+.++.......+.+++ ..+++|||||+..|.
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~ 63 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKF--S----------------EQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFR 63 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC--C----------------CCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHH
Confidence 689999999999999999962211 0 00011122222333344444 578999999999999
Q ss_pred HHHHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHHHh---cCCCEEEEEeCCCcCC
Q 007325 170 LEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 221 (608)
Q Consensus 170 ~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~~~---~~~p~ivviNK~D~~~ 221 (608)
......++.+|++|+|+|+.+....+....| ..+.. .++|+++|+||+|+..
T Consensus 64 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~ 119 (164)
T smart00175 64 SITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLED 119 (164)
T ss_pred HHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhccc
Confidence 9999999999999999999875544443334 23322 4689999999999753
No 159
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.67 E-value=1.9e-15 Score=139.41 Aligned_cols=126 Identities=21% Similarity=0.187 Sum_probs=101.0
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC-eeEEEEeCCCCCCc
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK-HRINIIDTPGHVDF 168 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~-~~i~liDTPG~~df 168 (608)
..+|+++|..++||||++.++.+......... ++. +... ..|.+|+.....++...+ +.+.|.|||||.+|
T Consensus 10 ~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~----~~~--~s~k--~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF 81 (187)
T COG2229 10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEAD----ASS--VSGK--GKRPTTVAMDFGSIELDEDTGVHLFGTPGQERF 81 (187)
T ss_pred ceeEEEEcccccchhhHHHHhhccccceeecc----ccc--cccc--cccceeEeecccceEEcCcceEEEecCCCcHHH
Confidence 35899999999999999999975443221110 000 0000 145689999999998876 89999999999999
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcC-CCEEEEEeCCCcCCCc
Q 007325 169 TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYG-VPRICFVNKMDRLGAN 223 (608)
Q Consensus 169 ~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~-~p~ivviNK~D~~~~~ 223 (608)
...+.-..+.++++|++||++.+.....+.+++.+...+ +|++|++||.|+..+.
T Consensus 82 ~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ 137 (187)
T COG2229 82 KFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDAL 137 (187)
T ss_pred HHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCC
Confidence 999999999999999999999988887778888887777 9999999999998763
No 160
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.67 E-value=1.1e-15 Score=142.81 Aligned_cols=109 Identities=17% Similarity=0.207 Sum_probs=73.9
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEee-cCeeEEEEeCCCCCCchH
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPGHVDFTL 170 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPG~~df~~ 170 (608)
.|+++|.+|+|||||+++|.... ... . . ...|.+ ...+.+ ....+.+|||||+..|..
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~--~~~--~----------~---~t~~~~----~~~~~~~~~~~l~i~D~~G~~~~~~ 59 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAE--LVT--T----------I---PTVGFN----VEMLQLEKHLSLTVWDVGGQEKMRT 59 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCC--ccc--c----------c---CccCcc----eEEEEeCCceEEEEEECCCCHhHHH
Confidence 37899999999999999996221 100 0 0 001111 112222 347899999999999988
Q ss_pred HHHHHHHhcCeEEEEEcCCCCCchhH-HHHHHHH----HhcCCCEEEEEeCCCcCC
Q 007325 171 EVERALRVLDGAICLFDSVAGVEPQS-ETVWRQA----DKYGVPRICFVNKMDRLG 221 (608)
Q Consensus 171 ~~~~~l~~~D~~i~VvDa~~g~~~~t-~~~~~~~----~~~~~p~ivviNK~D~~~ 221 (608)
.+...++.+|++|+|+|+.+...... ...+... ...++|+++|+||+|+..
T Consensus 60 ~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 115 (160)
T cd04156 60 VWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPG 115 (160)
T ss_pred HHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECccccc
Confidence 88888999999999999987532111 1122222 125799999999999854
No 161
>PTZ00369 Ras-like protein; Provisional
Probab=99.67 E-value=1.1e-15 Score=147.51 Aligned_cols=114 Identities=16% Similarity=0.170 Sum_probs=76.3
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchH
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~ 170 (608)
.+|+++|.+|+|||||+++++.... .. .+.+ ..+.+. .....+......+++|||||+.+|..
T Consensus 6 ~Ki~iiG~~~~GKTsLi~~~~~~~~--~~-----------~~~~---t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~ 68 (189)
T PTZ00369 6 YKLVVVGGGGVGKSALTIQFIQNHF--ID-----------EYDP---TIEDSY-RKQCVIDEETCLLDILDTAGQEEYSA 68 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--Cc-----------CcCC---chhhEE-EEEEEECCEEEEEEEEeCCCCccchh
Confidence 5899999999999999999973211 00 0000 001011 11112222345788999999999999
Q ss_pred HHHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHHH----hcCCCEEEEEeCCCcCC
Q 007325 171 EVERALRVLDGAICLFDSVAGVEPQSETVW-RQAD----KYGVPRICFVNKMDRLG 221 (608)
Q Consensus 171 ~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~~----~~~~p~ivviNK~D~~~ 221 (608)
.+..+++.+|++|+|+|+++.........| ..+. ..++|+++|+||+|+..
T Consensus 69 l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 124 (189)
T PTZ00369 69 MRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDS 124 (189)
T ss_pred hHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 999999999999999999875432222222 2222 23789999999999753
No 162
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.67 E-value=1.8e-15 Score=147.61 Aligned_cols=111 Identities=21% Similarity=0.301 Sum_probs=76.2
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeec---CeeEEEEeCCCCCCc
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN---KHRINIIDTPGHVDF 168 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~---~~~i~liDTPG~~df 168 (608)
+|+++|.+|+|||||+++|+... ... .+ ...+..+.....+.++ ...+.+|||||+..|
T Consensus 2 KivivG~~~vGKTsli~~l~~~~--~~~-----------~~-----~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~ 63 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGI--FSQ-----------HY-----KATIGVDFALKVIEWDPNTVVRLQLWDIAGQERF 63 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC--CCC-----------CC-----CCceeEEEEEEEEEECCCCEEEEEEEECCCchhh
Confidence 68999999999999999997321 100 00 0111111222223333 467899999999999
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHH-HHH-------hcCCCEEEEEeCCCcC
Q 007325 169 TLEVERALRVLDGAICLFDSVAGVEPQSETVWR-QAD-------KYGVPRICFVNKMDRL 220 (608)
Q Consensus 169 ~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~-~~~-------~~~~p~ivviNK~D~~ 220 (608)
.......++.+|++|+|+|.++.........|. .+. ..++|+++|+||+|+.
T Consensus 64 ~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~ 123 (201)
T cd04107 64 GGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLK 123 (201)
T ss_pred hhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcc
Confidence 988899999999999999998754444333332 221 2568999999999985
No 163
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.67 E-value=2.1e-15 Score=141.20 Aligned_cols=111 Identities=17% Similarity=0.148 Sum_probs=74.5
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeE-eecEEEEeec--CeeEEEEeCCCCCC
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITI-TSAATTTYWN--KHRINIIDTPGHVD 167 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi-~~~~~~~~~~--~~~i~liDTPG~~d 167 (608)
.+|+++|.+|+|||||+++++.... .. ++.+ |+ ......+..+ ...+.+|||||+.+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~--~~-----------~~~~-------t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 61 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIF--VE-----------KYDP-------TIEDSYRKQIEVDGQQCMLEILDTAGTEQ 61 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--Cc-----------ccCC-------chhhhEEEEEEECCEEEEEEEEECCCccc
Confidence 4799999999999999999973211 10 0000 10 0001122223 35678999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCCCchhHHH-HHHHHHh----cCCCEEEEEeCCCcCC
Q 007325 168 FTLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQADK----YGVPRICFVNKMDRLG 221 (608)
Q Consensus 168 f~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~-~~~~~~~----~~~p~ivviNK~D~~~ 221 (608)
|.......++.+|++++|+|.++........ .+..+.. .++|+++|+||+|+..
T Consensus 62 ~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 120 (163)
T cd04136 62 FTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLED 120 (163)
T ss_pred cchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 9988888999999999999998643322222 2233322 3689999999999753
No 164
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.67 E-value=1.5e-15 Score=143.54 Aligned_cols=112 Identities=19% Similarity=0.176 Sum_probs=74.8
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCCCCCCch
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFT 169 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~df~ 169 (608)
+|+++|++|+|||||+++|+...-.. .. ...+..+.....+.+.+ ..+++|||||+.+|.
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~----~~--------------~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 63 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSN----QY--------------KATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQ 63 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCc----Cc--------------CCccceEEEEEEEEECCEEEEEEEEeCCChHHHH
Confidence 68999999999999999997321100 00 00011111112233333 467899999999999
Q ss_pred HHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHH--HHh------cCCCEEEEEeCCCcCC
Q 007325 170 LEVERALRVLDGAICLFDSVAGVEPQSETVWRQ--ADK------YGVPRICFVNKMDRLG 221 (608)
Q Consensus 170 ~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~--~~~------~~~p~ivviNK~D~~~ 221 (608)
......++.+|++|+|+|+.+.........|.. ... .++|+++|+||+|+..
T Consensus 64 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (172)
T cd01862 64 SLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE 123 (172)
T ss_pred hHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc
Confidence 888899999999999999987543333223321 111 2789999999999863
No 165
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.67 E-value=2.8e-15 Score=140.90 Aligned_cols=111 Identities=18% Similarity=0.150 Sum_probs=75.0
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeec--CeeEEEEeCCCCCCch
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGHVDFT 169 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG~~df~ 169 (608)
+|+++|.+|+|||||+++++. +.... ... . + +.......+..+ ...+++|||||+..|.
T Consensus 3 ki~~~G~~~~GKTsli~~~~~--~~~~~--~~~-~-t-------------~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 63 (164)
T cd04175 3 KLVVLGSGGVGKSALTVQFVQ--GIFVE--KYD-P-T-------------IEDSYRKQVEVDGQQCMLEILDTAGTEQFT 63 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHh--CCCCc--ccC-C-c-------------chheEEEEEEECCEEEEEEEEECCCcccch
Confidence 789999999999999999972 21111 000 0 0 001111223333 3567899999999999
Q ss_pred HHHHHHHHhcCeEEEEEcCCCCCchhHH-HHHHHHH----hcCCCEEEEEeCCCcCC
Q 007325 170 LEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQAD----KYGVPRICFVNKMDRLG 221 (608)
Q Consensus 170 ~~~~~~l~~~D~~i~VvDa~~g~~~~t~-~~~~~~~----~~~~p~ivviNK~D~~~ 221 (608)
......++.+|++|+|+|.++....... ..+..+. ..++|+++|+||+|+..
T Consensus 64 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 120 (164)
T cd04175 64 AMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 120 (164)
T ss_pred hHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchh
Confidence 9999999999999999998864433322 2223222 24689999999999753
No 166
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.67 E-value=1.9e-15 Score=142.85 Aligned_cols=114 Identities=18% Similarity=0.148 Sum_probs=78.8
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchH
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~ 170 (608)
.+|+++|.+|+|||||+++++... ...... ...|.+.......+......+++|||||+.+|..
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~--~~~~~~--------------~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 68 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKR--FQPVHD--------------LTIGVEFGARMITIDGKQIKLQIWDTAGQESFRS 68 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC--CCCCCC--------------CccceeEEEEEEEECCEEEEEEEEECCCcHHHHH
Confidence 589999999999999999996221 100000 0112233333333333346789999999999988
Q ss_pred HHHHHHHhcCeEEEEEcCCCCCchhHHHHHH-HHHh---cCCCEEEEEeCCCcC
Q 007325 171 EVERALRVLDGAICLFDSVAGVEPQSETVWR-QADK---YGVPRICFVNKMDRL 220 (608)
Q Consensus 171 ~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~-~~~~---~~~p~ivviNK~D~~ 220 (608)
.....++.+|++|+|+|+++....+....|. .+.. .++|+++|.||+|+.
T Consensus 69 ~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~ 122 (168)
T cd01866 69 ITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLE 122 (168)
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 8888999999999999999654444443333 2323 368999999999975
No 167
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.66 E-value=1.3e-15 Score=143.94 Aligned_cols=113 Identities=24% Similarity=0.233 Sum_probs=76.2
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchHH
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (608)
+|+++|.+|+|||||+++++.... .. . + ....++.+.............+.+|||||+.+|...
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~--~~--~---------~---~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 65 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEF--EK--K---------Y---VATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGL 65 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--CC--C---------C---CCceeeEEEEEEEEECCEEEEEEEEECCCChhhccc
Confidence 689999999999999999973211 00 0 0 000111221111112223467899999999998877
Q ss_pred HHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHHHh--cCCCEEEEEeCCCcC
Q 007325 172 VERALRVLDGAICLFDSVAGVEPQSETVW-RQADK--YGVPRICFVNKMDRL 220 (608)
Q Consensus 172 ~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~~~--~~~p~ivviNK~D~~ 220 (608)
....++.+|++|+|+|.++....+....| ..+.. .++|+++|+||+|+.
T Consensus 66 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~ 117 (166)
T cd00877 66 RDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIK 117 (166)
T ss_pred cHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcc
Confidence 77888999999999999976554444333 33322 279999999999985
No 168
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.66 E-value=1.6e-15 Score=141.91 Aligned_cols=113 Identities=19% Similarity=0.196 Sum_probs=77.0
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchHH
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (608)
+|+++|.+|+|||||+++|+....... .+...+.+.......+......+.+|||||+..|...
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 65 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPD----------------LAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTL 65 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcc----------------cCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhh
Confidence 689999999999999999962211000 0111122222222222223467899999999999888
Q ss_pred HHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHH----HhcCCCEEEEEeCCCcC
Q 007325 172 VERALRVLDGAICLFDSVAGVEPQSETVW-RQA----DKYGVPRICFVNKMDRL 220 (608)
Q Consensus 172 ~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~----~~~~~p~ivviNK~D~~ 220 (608)
....++.+|++|+|+|+++....+....| ..+ ...++|+++|+||+|+.
T Consensus 66 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~ 119 (161)
T cd01863 66 TSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKE 119 (161)
T ss_pred hHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccc
Confidence 88889999999999999875444333333 222 23578999999999986
No 169
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.66 E-value=1.5e-15 Score=142.07 Aligned_cols=113 Identities=17% Similarity=0.121 Sum_probs=74.9
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchHH
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (608)
+|+++|.+|+|||||+++|+...-..... .+..+. . .....+......+.+|||||+.+|...
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~~~~~------~~~~~~----------~-~~~~~~~~~~~~~~i~D~~g~~~~~~~ 64 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFVEDYE------PTKADS----------Y-RKKVVLDGEDVQLNILDTAGQEDYAAI 64 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCccccC------Ccchhh----------E-EEEEEECCEEEEEEEEECCChhhhhHH
Confidence 79999999999999999997322110000 000010 0 011122223467999999999999999
Q ss_pred HHHHHHhcCeEEEEEcCCCCCchh-HHHHHHHHH----hcCCCEEEEEeCCCcCC
Q 007325 172 VERALRVLDGAICLFDSVAGVEPQ-SETVWRQAD----KYGVPRICFVNKMDRLG 221 (608)
Q Consensus 172 ~~~~l~~~D~~i~VvDa~~g~~~~-t~~~~~~~~----~~~~p~ivviNK~D~~~ 221 (608)
...+++.+|++++|+|..+.-... ....+.... ..++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~ 119 (164)
T cd04139 65 RDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLED 119 (164)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccc
Confidence 999999999999999987642211 112222222 25799999999999754
No 170
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.66 E-value=2.5e-15 Score=141.14 Aligned_cols=113 Identities=15% Similarity=0.199 Sum_probs=75.0
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchHH
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (608)
+|+++|++|+|||||+++|+...... ... ..-+.+.......+......+++|||||+.+|...
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~----~~~------------~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 65 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVS----KYL------------PTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEV 65 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC----CCC------------CccceeEEEEEEEECCeEEEEEEEECCccHHHHHH
Confidence 68999999999999999997321100 000 00111111122222223468899999999999888
Q ss_pred HHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHHHh--------cCCCEEEEEeCCCcC
Q 007325 172 VERALRVLDGAICLFDSVAGVEPQSETVW-RQADK--------YGVPRICFVNKMDRL 220 (608)
Q Consensus 172 ~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~~~--------~~~p~ivviNK~D~~ 220 (608)
....++.+|++|+|+|.++.........| ..+.+ .+.|+++|+||+|+.
T Consensus 66 ~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 123 (168)
T cd04119 66 RNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLT 123 (168)
T ss_pred HHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcc
Confidence 88889999999999999875433333223 22221 458999999999975
No 171
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.66 E-value=3.4e-15 Score=145.51 Aligned_cols=111 Identities=21% Similarity=0.215 Sum_probs=78.9
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCCCCCCch
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFT 169 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~df~ 169 (608)
.|+++|..|+|||||+.++.+.. ... ++ ...++.......+.+++ ..+++|||+|+.+|.
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~--f~~-----------~~-----~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~ 63 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDT--FCE-----------AC-----KSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFN 63 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCC--CCC-----------cC-----CCcceeEEEEEEEEECCEEEEEEEEeCCCchhhH
Confidence 58899999999999999997321 100 00 01112222223344444 678999999999999
Q ss_pred HHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHH-HH---hcCCCEEEEEeCCCcC
Q 007325 170 LEVERALRVLDGAICLFDSVAGVEPQSETVWRQ-AD---KYGVPRICFVNKMDRL 220 (608)
Q Consensus 170 ~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~-~~---~~~~p~ivviNK~D~~ 220 (608)
..+..+++.+|++|+|+|.++....+....|.. +. ..++|+++|.||+|+.
T Consensus 64 ~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~ 118 (202)
T cd04120 64 SITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE 118 (202)
T ss_pred HHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 999999999999999999998655555444433 22 2468999999999985
No 172
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.66 E-value=2.7e-15 Score=141.32 Aligned_cols=113 Identities=19% Similarity=0.199 Sum_probs=76.4
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeec--CeeEEEEeCCCCCCc
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGHVDF 168 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG~~df 168 (608)
.+|+++|.+|+|||||+++++.... .. . + ...++.......+..+ ...+.+|||||+.+|
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~--~~--~---------~-----~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 64 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTY--TE--S---------Y-----ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 64 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC--CC--C---------C-----CCccceeEEEEEEEECCEEEEEEEEECCCcHhH
Confidence 5899999999999999999972211 00 0 0 0111222222233333 357899999999999
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHHHh---cCCCEEEEEeCCCcCC
Q 007325 169 TLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 221 (608)
Q Consensus 169 ~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~~~---~~~p~ivviNK~D~~~ 221 (608)
.......++.+|++|+|+|+++.........| ..+.. .++|+++|.||+|+..
T Consensus 65 ~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~ 121 (166)
T cd01869 65 RTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTD 121 (166)
T ss_pred HHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhccc
Confidence 98888999999999999999874332222222 22222 4689999999999753
No 173
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.66 E-value=2.6e-15 Score=141.54 Aligned_cols=115 Identities=17% Similarity=0.177 Sum_probs=77.2
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchH
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~ 170 (608)
.+|+++|++|+|||||++++... .... ++. ...|.+.......+......+.+|||||+..|..
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~--~~~~-----------~~~---~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 66 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEK--KFMA-----------DCP---HTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRA 66 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcC--CCCC-----------CCC---cccceeEEEEEEEECCEEEEEEEEECCCcHHHHH
Confidence 57999999999999999999622 1100 000 0011122222222222335789999999999999
Q ss_pred HHHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHHH---hcCCCEEEEEeCCCcCC
Q 007325 171 EVERALRVLDGAICLFDSVAGVEPQSETVW-RQAD---KYGVPRICFVNKMDRLG 221 (608)
Q Consensus 171 ~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~~---~~~~p~ivviNK~D~~~ 221 (608)
.....++.+|++|+|+|.++....+....| .... ..+.|+++|.||+|+..
T Consensus 67 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~ 121 (166)
T cd04122 67 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEA 121 (166)
T ss_pred HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 899999999999999999975444433333 2222 24678999999999854
No 174
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.66 E-value=2.9e-15 Score=145.15 Aligned_cols=120 Identities=19% Similarity=0.272 Sum_probs=82.1
Q ss_pred ccCCCCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeC
Q 007325 83 RVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDT 162 (608)
Q Consensus 83 ~~~~~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDT 162 (608)
...+....++|+++|++|+|||||+++|+.... .. . .....|.|....... + +..+.||||
T Consensus 17 ~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~-~~---~------------~~~~~~~t~~~~~~~--~-~~~l~l~Dt 77 (196)
T PRK00454 17 EQLPPDDGPEIAFAGRSNVGKSSLINALTNRKN-LA---R------------TSKTPGRTQLINFFE--V-NDKLRLVDL 77 (196)
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCC-cc---c------------ccCCCCceeEEEEEe--c-CCeEEEeCC
Confidence 344566789999999999999999999972110 00 0 011123444433322 2 468999999
Q ss_pred CCCCC----------chHHHHHHHHhc---CeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCC
Q 007325 163 PGHVD----------FTLEVERALRVL---DGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (608)
Q Consensus 163 PG~~d----------f~~~~~~~l~~~---D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~ 221 (608)
||+.. +......+++.+ +++++|+|+..+.......+++.+...++|+++++||+|+..
T Consensus 78 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~ 149 (196)
T PRK00454 78 PGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLK 149 (196)
T ss_pred CCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCC
Confidence 99642 333334444444 678889999887777666677777788999999999999864
No 175
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.66 E-value=2.5e-15 Score=142.18 Aligned_cols=110 Identities=22% Similarity=0.176 Sum_probs=80.1
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchHH
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (608)
+|+++|.+|+|||||+++|... . .... ..|+......+.+++..+++|||||+..|...
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~---~--~~~~----------------~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~ 59 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE---I--PKKV----------------APTVGFTPTKLRLDKYEVCIFDLGGGANFRGI 59 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC---C--Cccc----------------cCcccceEEEEEECCEEEEEEECCCcHHHHHH
Confidence 4899999999999999999521 1 0000 11332333456667899999999999999999
Q ss_pred HHHHHHhcCeEEEEEcCCCCCchh-HHHHHHHHHh----cCCCEEEEEeCCCcCCC
Q 007325 172 VERALRVLDGAICLFDSVAGVEPQ-SETVWRQADK----YGVPRICFVNKMDRLGA 222 (608)
Q Consensus 172 ~~~~l~~~D~~i~VvDa~~g~~~~-t~~~~~~~~~----~~~p~ivviNK~D~~~~ 222 (608)
+..+++.+|++|+|+|+++.-... ....+..+.. .++|+++|+||+|+..+
T Consensus 60 ~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~ 115 (167)
T cd04161 60 WVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNA 115 (167)
T ss_pred HHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCC
Confidence 999999999999999998743222 2223333322 47899999999998764
No 176
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.66 E-value=1e-15 Score=166.69 Aligned_cols=113 Identities=19% Similarity=0.196 Sum_probs=86.0
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCch
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~ 169 (608)
..+|+++|++|+|||||+|+|+.... .. .....|+|.+.....+.+++..+++|||||+.++.
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~---a~--------------v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~ 277 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEER---AI--------------VTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETD 277 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC---cc--------------cCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCc
Confidence 36899999999999999999962211 00 11124567777777778889999999999998764
Q ss_pred HH--------HHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCC
Q 007325 170 LE--------VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (608)
Q Consensus 170 ~~--------~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~ 221 (608)
.. ....++.+|++++|+|++++........|.. ..++|+++|+||+|+..
T Consensus 278 ~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~~ 335 (449)
T PRK05291 278 DEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLTG 335 (449)
T ss_pred cHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhccc
Confidence 32 3346788999999999998776666666655 55789999999999854
No 177
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.65 E-value=1.3e-15 Score=148.33 Aligned_cols=111 Identities=18% Similarity=0.147 Sum_probs=75.8
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCCCCCCch
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFT 169 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~df~ 169 (608)
+|+++|+.|+|||||+++++...- .. . + ...+.......+.+++ ..+++|||||+.+|.
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~--~~--~---------~------~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~ 61 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTF--EP--K---------Y------RRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFP 61 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC--Cc--c---------C------CCchhhheeEEEEECCEEEEEEEEECCCchhhh
Confidence 489999999999999999973211 00 0 0 0001111222344444 578999999999998
Q ss_pred HHHHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHHH----hcCCCEEEEEeCCCcCC
Q 007325 170 LEVERALRVLDGAICLFDSVAGVEPQSETVW-RQAD----KYGVPRICFVNKMDRLG 221 (608)
Q Consensus 170 ~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~~----~~~~p~ivviNK~D~~~ 221 (608)
.....++..+|++|+|+|+++....+....| ..+. ..++|+++|+||+|+..
T Consensus 62 ~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 118 (198)
T cd04147 62 AMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLE 118 (198)
T ss_pred HHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccccc
Confidence 8888899999999999999875433322222 2222 25799999999999854
No 178
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.65 E-value=3.8e-15 Score=140.47 Aligned_cols=110 Identities=17% Similarity=0.112 Sum_probs=78.9
Q ss_pred EEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchHHH
Q 007325 93 IGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEV 172 (608)
Q Consensus 93 i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~ 172 (608)
|+++|..|+|||||++++..... . . ++.+ |+......+.+++..+.+|||||+.+|...+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~--~--~---------~~~p-------t~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~ 61 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERS--L--E---------SVVP-------TTGFNSVAIPTQDAIMELLEIGGSQNLRKYW 61 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCC--c--c---------cccc-------cCCcceEEEeeCCeEEEEEECCCCcchhHHH
Confidence 78999999999999999962211 0 0 0000 2222234456678899999999999999999
Q ss_pred HHHHHhcCeEEEEEcCCCCCchhH-HHHHHHHH--hcCCCEEEEEeCCCcCCC
Q 007325 173 ERALRVLDGAICLFDSVAGVEPQS-ETVWRQAD--KYGVPRICFVNKMDRLGA 222 (608)
Q Consensus 173 ~~~l~~~D~~i~VvDa~~g~~~~t-~~~~~~~~--~~~~p~ivviNK~D~~~~ 222 (608)
..+++.+|++|+|+|+++...... ...+..+. ..++|+++|+||+|+...
T Consensus 62 ~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~ 114 (164)
T cd04162 62 KRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAA 114 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCC
Confidence 999999999999999987542222 22223332 257999999999998654
No 179
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.65 E-value=1e-15 Score=141.09 Aligned_cols=113 Identities=27% Similarity=0.321 Sum_probs=78.3
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCCCCCCc
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDF 168 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~df 168 (608)
.+|+++|++|+|||||+++|+... .+.+..++++.......+..++ ..+.+|||||+.++
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 63 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK------------------FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDY 63 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC------------------CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccc
Confidence 589999999999999999996221 0111223455555555566666 78999999999999
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCC-------CchhHHHHHHHHHhcCCCEEEEEeCCCcCCC
Q 007325 169 TLEVERALRVLDGAICLFDSVAG-------VEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (608)
Q Consensus 169 ~~~~~~~l~~~D~~i~VvDa~~g-------~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (608)
........+.++.++.++|.... .......+++.+.. +.|+++++||+|+...
T Consensus 64 ~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~ 123 (161)
T TIGR00231 64 RAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRDA 123 (161)
T ss_pred hHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCcc
Confidence 77777767777776666666543 22333333343333 8899999999998653
No 180
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.65 E-value=5.5e-15 Score=138.96 Aligned_cols=113 Identities=16% Similarity=0.156 Sum_probs=77.0
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCCCCCCc
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDF 168 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~df 168 (608)
.+|+++|.+|+|||||+++|+... ... +..+.++.+.....+..++ ..+.+|||||+..|
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~--~~~----------------~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 65 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNE--FNL----------------DSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERY 65 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC--CCC----------------CCCCccceEEEEEEEEECCEEEEEEEEeCCChHHH
Confidence 589999999999999999996211 000 0011112222333344444 46899999999999
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHHHh---cCCCEEEEEeCCCcCC
Q 007325 169 TLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 221 (608)
Q Consensus 169 ~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~~~---~~~p~ivviNK~D~~~ 221 (608)
.......++.+|++|+|+|+++........-| ..+.. .++|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~ 122 (165)
T cd01868 66 RAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRH 122 (165)
T ss_pred HHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 88888899999999999999864433333223 22222 3589999999999753
No 181
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.65 E-value=4.2e-15 Score=138.71 Aligned_cols=112 Identities=19% Similarity=0.175 Sum_probs=75.2
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEee--cCeeEEEEeCCCCCCch
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW--NKHRINIIDTPGHVDFT 169 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~--~~~~i~liDTPG~~df~ 169 (608)
+|+++|.+|+|||||+++|+........ .+.++.......+.+ ....+++|||||+..|.
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 63 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEKH------------------ESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYH 63 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCc------------------CCccceeEEEEEEEECCEEEEEEEEECCchHHHH
Confidence 7999999999999999999732211000 001111111112222 23578999999999888
Q ss_pred HHHHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHHH---hcCCCEEEEEeCCCcCC
Q 007325 170 LEVERALRVLDGAICLFDSVAGVEPQSETVW-RQAD---KYGVPRICFVNKMDRLG 221 (608)
Q Consensus 170 ~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~~---~~~~p~ivviNK~D~~~ 221 (608)
......++.+|++++|+|.+++-..+....| ..+. ..++|+++|+||+|+..
T Consensus 64 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~ 119 (162)
T cd04123 64 ALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLER 119 (162)
T ss_pred HhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 8888888999999999999876543333333 2222 23689999999999763
No 182
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.65 E-value=2.1e-15 Score=142.18 Aligned_cols=114 Identities=13% Similarity=0.133 Sum_probs=76.9
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchH
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~ 170 (608)
.+|+++|.+|+|||||+++++. +..... +.+. -+ ........+......+.+|||||+.+|..
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~--~~f~~~-----------~~~t---~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 64 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVK--GTFRES-----------YIPT---IE-DTYRQVISCSKNICTLQITDTTGSHQFPA 64 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHh--CCCCCC-----------cCCc---ch-heEEEEEEECCEEEEEEEEECCCCCcchH
Confidence 3689999999999999999972 211100 0000 00 00111222333456789999999999998
Q ss_pred HHHHHHHhcCeEEEEEcCCCCCchhH-HHHHHHHHh------cCCCEEEEEeCCCcCC
Q 007325 171 EVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK------YGVPRICFVNKMDRLG 221 (608)
Q Consensus 171 ~~~~~l~~~D~~i~VvDa~~g~~~~t-~~~~~~~~~------~~~p~ivviNK~D~~~ 221 (608)
....+++.+|++|+|+|.++...... ...+..+.. .++|+++|.||+|+..
T Consensus 65 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 122 (165)
T cd04140 65 MQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESH 122 (165)
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccc
Confidence 88888999999999999987554433 233333332 4689999999999753
No 183
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.65 E-value=4.2e-15 Score=141.95 Aligned_cols=114 Identities=15% Similarity=0.090 Sum_probs=76.2
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEee------------cCeeE
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW------------NKHRI 157 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~------------~~~~i 157 (608)
..+|+++|.+|+|||||++++...... +... ..+..+.....+.+ ....+
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~----~~~~--------------~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFN----PKFI--------------TTVGIDFREKRVVYNSSGPGGTLGRGQRIHL 65 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCC----ccCC--------------CccceEEEEEEEEEcCccccccccCCCEEEE
Confidence 468999999999999999999632110 0000 00011111111111 23678
Q ss_pred EEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHH-HHHh----cCCCEEEEEeCCCcCC
Q 007325 158 NIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWR-QADK----YGVPRICFVNKMDRLG 221 (608)
Q Consensus 158 ~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~-~~~~----~~~p~ivviNK~D~~~ 221 (608)
.||||||+.+|.......++.+|++|+|+|+++....+....|. .+.. .+.|+++|.||+|+..
T Consensus 66 ~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 134 (180)
T cd04127 66 QLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLED 134 (180)
T ss_pred EEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchh
Confidence 99999999999988999999999999999998754434333332 2322 3679999999999753
No 184
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.64 E-value=4.9e-15 Score=139.88 Aligned_cols=114 Identities=18% Similarity=0.150 Sum_probs=77.4
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCCCCCC
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVD 167 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~d 167 (608)
..+|+++|.+|+|||||++++.... ... . + ...+........+.+++ ..+.+|||||+.+
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~--f~~--~---------~-----~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~ 64 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDS--FNP--S---------F-----ISTIGIDFKIRTIELDGKKIKLQIWDTAGQER 64 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCc--CCc--c---------c-----ccCccceEEEEEEEECCEEEEEEEEeCCchHH
Confidence 4689999999999999999996221 100 0 0 00111111222233333 5789999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHH-HHHh---cCCCEEEEEeCCCcCC
Q 007325 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWR-QADK---YGVPRICFVNKMDRLG 221 (608)
Q Consensus 168 f~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~-~~~~---~~~p~ivviNK~D~~~ 221 (608)
|.......++.+|++|+|+|+++.........|. .+.. .++|+++|.||+|+..
T Consensus 65 ~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~ 122 (167)
T cd01867 65 FRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEE 122 (167)
T ss_pred HHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 9888888999999999999998754433333332 2222 4689999999999864
No 185
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.64 E-value=5.8e-15 Score=136.18 Aligned_cols=111 Identities=20% Similarity=0.199 Sum_probs=82.0
Q ss_pred EEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeec-CeeEEEEeCCCCCCch----
Q 007325 95 IMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-KHRINIIDTPGHVDFT---- 169 (608)
Q Consensus 95 ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~-~~~i~liDTPG~~df~---- 169 (608)
++|++|+|||||+++|+...... .....+.|.......+.+. ...+.+|||||+.++.
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~ 63 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAI-----------------VSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGR 63 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccc-----------------cCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchh
Confidence 58999999999999996221110 1112334545444455444 6789999999998764
Q ss_pred ---HHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCC
Q 007325 170 ---LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (608)
Q Consensus 170 ---~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (608)
......++.+|++++|+|+..................++|+++|+||+|+...
T Consensus 64 ~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~ 119 (163)
T cd00880 64 EREELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPE 119 (163)
T ss_pred hHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCCh
Confidence 34556789999999999999987777766566777789999999999998653
No 186
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.64 E-value=6.3e-15 Score=139.32 Aligned_cols=110 Identities=20% Similarity=0.197 Sum_probs=75.0
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEe-ecEEEEeec--CeeEEEEeCCCCCCc
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITIT-SAATTTYWN--KHRINIIDTPGHVDF 168 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~-~~~~~~~~~--~~~i~liDTPG~~df 168 (608)
+|+++|.+|+|||||+++++.... .. .+.+ |+. .....+.++ ...+.+|||||+.+|
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~~--~~-----------~~~~-------t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 62 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNVF--IE-----------SYDP-------TIEDSYRKQVEIDGRQCDLEILDTAGTEQF 62 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--Cc-----------ccCC-------cchheEEEEEEECCEEEEEEEEeCCCcccc
Confidence 689999999999999999962211 10 0000 111 111222333 357889999999999
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCCCchhHHHHH-----HHHHhcCCCEEEEEeCCCcCC
Q 007325 169 TLEVERALRVLDGAICLFDSVAGVEPQSETVW-----RQADKYGVPRICFVNKMDRLG 221 (608)
Q Consensus 169 ~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-----~~~~~~~~p~ivviNK~D~~~ 221 (608)
.......++.+|++|+|+|.++....+....| +.....++|+++++||+|+..
T Consensus 63 ~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~ 120 (168)
T cd04177 63 TAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLED 120 (168)
T ss_pred hhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccc
Confidence 99999999999999999999864333222222 222235799999999999753
No 187
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.64 E-value=3.1e-15 Score=163.33 Aligned_cols=110 Identities=25% Similarity=0.353 Sum_probs=90.3
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCch-
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT- 169 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~- 169 (608)
..||++|.||+|||||+|+| +|...+.|++ .|+|++...+.+.++++++.++|.||..++.
T Consensus 4 ~~valvGNPNvGKTtlFN~L---TG~~q~VgNw---------------pGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~ 65 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNAL---TGANQKVGNW---------------PGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTA 65 (653)
T ss_pred ceEEEecCCCccHHHHHHHH---hccCceecCC---------------CCeeEEEEEEEEEecCceEEEEeCCCcCCCCC
Confidence 46999999999999999999 5777777765 6889999999999999999999999976642
Q ss_pred ---HH--HHHHH--HhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcC
Q 007325 170 ---LE--VERAL--RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (608)
Q Consensus 170 ---~~--~~~~l--~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~ 220 (608)
+| +..++ ...|++|.|+||++ -.....+.-|+.+.++|+++++|++|..
T Consensus 66 ~S~DE~Var~~ll~~~~D~ivnVvDAtn--LeRnLyltlQLlE~g~p~ilaLNm~D~A 121 (653)
T COG0370 66 YSEDEKVARDFLLEGKPDLIVNVVDATN--LERNLYLTLQLLELGIPMILALNMIDEA 121 (653)
T ss_pred CCchHHHHHHHHhcCCCCEEEEEcccch--HHHHHHHHHHHHHcCCCeEEEeccHhhH
Confidence 11 22233 34599999999997 5566666678889999999999999964
No 188
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.64 E-value=5.4e-15 Score=139.54 Aligned_cols=113 Identities=17% Similarity=0.124 Sum_probs=76.8
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchHH
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (608)
+|+++|+.|+|||||+++|+.... . .... ... ...++. ..+...+..+++|||||+.++...
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~--~--~~~~---~~~--------~~~~~~---~~~~~~~~~~~i~Dt~G~~~~~~~ 63 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEF--P--ENVP---RVL--------PEITIP---ADVTPERVPTTIVDTSSRPQDRAN 63 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC--C--ccCC---Ccc--------cceEee---eeecCCeEEEEEEeCCCchhhhHH
Confidence 689999999999999999973211 1 0000 000 011211 112234578999999999988888
Q ss_pred HHHHHHhcCeEEEEEcCCCCCchhHH-HHH-HHHH--hcCCCEEEEEeCCCcCCC
Q 007325 172 VERALRVLDGAICLFDSVAGVEPQSE-TVW-RQAD--KYGVPRICFVNKMDRLGA 222 (608)
Q Consensus 172 ~~~~l~~~D~~i~VvDa~~g~~~~t~-~~~-~~~~--~~~~p~ivviNK~D~~~~ 222 (608)
+...++.+|++++|+|+++....... ..| ..+. ..++|+++|+||+|+...
T Consensus 64 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~ 118 (166)
T cd01893 64 LAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDG 118 (166)
T ss_pred HhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccc
Confidence 88888999999999999876554442 233 3333 247899999999998643
No 189
>PLN03118 Rab family protein; Provisional
Probab=99.64 E-value=7.7e-15 Score=144.30 Aligned_cols=113 Identities=17% Similarity=0.208 Sum_probs=78.2
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeec--CeeEEEEeCCCCCC
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGHVD 167 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG~~d 167 (608)
..+|+|+|++|+|||||+++|+... .. ... +.+........+.++ ...+.||||||+.+
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~--~~---~~~--------------~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~ 74 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSS--VE---DLA--------------PTIGVDFKIKQLTVGGKRLKLTIWDTAGQER 74 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC--CC---CcC--------------CCceeEEEEEEEEECCEEEEEEEEECCCchh
Confidence 4689999999999999999997321 11 000 111122222233333 36789999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCCCchhHH-HHHHHH-H----hcCCCEEEEEeCCCcCC
Q 007325 168 FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQA-D----KYGVPRICFVNKMDRLG 221 (608)
Q Consensus 168 f~~~~~~~l~~~D~~i~VvDa~~g~~~~t~-~~~~~~-~----~~~~p~ivviNK~D~~~ 221 (608)
|......+++.+|++|+|+|+++....... ..|... . ..++|+++|+||+|+..
T Consensus 75 ~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~ 134 (211)
T PLN03118 75 FRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRES 134 (211)
T ss_pred hHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 999999999999999999999975443333 234322 2 23579999999999854
No 190
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.64 E-value=6.8e-15 Score=143.33 Aligned_cols=114 Identities=21% Similarity=0.223 Sum_probs=77.5
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCCCCCC
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVD 167 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~d 167 (608)
..+|+++|.+|+|||||+++++...- . +. + ...+..+.....+.+.+ ..+.||||||+..
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~--~--~~---------~-----~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~ 67 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTF--S--GS---------Y-----ITTIGVDFKIRTVEINGERVKLQIWDTAGQER 67 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC--C--CC---------c-----CccccceeEEEEEEECCEEEEEEEEeCCCchh
Confidence 57899999999999999999962210 0 00 0 00111122223333333 5688999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHHHh--cCCCEEEEEeCCCcCC
Q 007325 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK--YGVPRICFVNKMDRLG 221 (608)
Q Consensus 168 f~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~~~--~~~p~ivviNK~D~~~ 221 (608)
|.......++.+|++|+|+|+++.-..+....| ..+.. ..+|+++|+||+|+..
T Consensus 68 ~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~ 124 (199)
T cd04110 68 FRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPE 124 (199)
T ss_pred HHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccc
Confidence 998899999999999999999875433333323 22322 3589999999999753
No 191
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.64 E-value=3.1e-15 Score=141.72 Aligned_cols=114 Identities=24% Similarity=0.284 Sum_probs=79.2
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCCCCCC
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVD 167 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~d 167 (608)
..+|+++|++|+|||||+++++. +.... +....+........+.+++ ..+++|||||+.+
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~--~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 63 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCA--GRFPE----------------RTEATIGVDFRERTVEIDGERIKVQLWDTAGQER 63 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh--CCCCC----------------ccccceeEEEEEEEEEECCeEEEEEEEeCCChHH
Confidence 46899999999999999999962 11100 0011112222223344444 6899999999998
Q ss_pred chH-HHHHHHHhcCeEEEEEcCCCCCchhHHHHHH-HHHh----cCCCEEEEEeCCCcCC
Q 007325 168 FTL-EVERALRVLDGAICLFDSVAGVEPQSETVWR-QADK----YGVPRICFVNKMDRLG 221 (608)
Q Consensus 168 f~~-~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~-~~~~----~~~p~ivviNK~D~~~ 221 (608)
|.. .....++.+|++++|+|+++....+....|. .+.. .++|+++|+||+|+..
T Consensus 64 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 123 (170)
T cd04115 64 FRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLRE 123 (170)
T ss_pred HHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchh
Confidence 864 4666788999999999999866655555554 3332 3589999999999753
No 192
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.64 E-value=1.8e-15 Score=138.78 Aligned_cols=97 Identities=20% Similarity=0.144 Sum_probs=66.1
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCC----C
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV----D 167 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~----d 167 (608)
+|+++|++|+|||||+++|+... .. + ..|+ .+.+.. .+|||||+. .
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~---~~------------~-------~~t~-----~~~~~~---~~iDt~G~~~~~~~ 51 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEE---IL------------Y-------KKTQ-----AVEYND---GAIDTPGEYVENRR 51 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCc---cc------------c-------ccce-----eEEEcC---eeecCchhhhhhHH
Confidence 69999999999999999996111 00 0 0021 222332 689999973 2
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCC
Q 007325 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (608)
Q Consensus 168 f~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~ 221 (608)
+...+...++.+|++|+|+|++++...+...++.. ...|+++|+||+|+..
T Consensus 52 ~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~---~~~p~ilv~NK~Dl~~ 102 (142)
T TIGR02528 52 LYSALIVTAADADVIALVQSATDPESRFPPGFASI---FVKPVIGLVTKIDLAE 102 (142)
T ss_pred HHHHHHHHhhcCCEEEEEecCCCCCcCCChhHHHh---ccCCeEEEEEeeccCC
Confidence 33334446789999999999998776655433322 2459999999999853
No 193
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.63 E-value=8.2e-15 Score=144.58 Aligned_cols=109 Identities=17% Similarity=0.100 Sum_probs=78.4
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchHH
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (608)
+|+++|.+|+|||||+++++... ... + ..|+........+..+.+.||||||+..|...
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~--f~~------------~-------~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l 60 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERR--FKD------------T-------VSTVGGAFYLKQWGPYNISIWDTAGREQFHGL 60 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCC--CCC------------C-------CCccceEEEEEEeeEEEEEEEeCCCcccchhh
Confidence 68999999999999999997221 100 0 01332223333456678999999999999988
Q ss_pred HHHHHHhcCeEEEEEcCCCCCchhHHH-HHHHHHh---cCCCEEEEEeCCCcCC
Q 007325 172 VERALRVLDGAICLFDSVAGVEPQSET-VWRQADK---YGVPRICFVNKMDRLG 221 (608)
Q Consensus 172 ~~~~l~~~D~~i~VvDa~~g~~~~t~~-~~~~~~~---~~~p~ivviNK~D~~~ 221 (608)
...+++.+|++|+|+|.++........ .|..+.. .++|+|+|.||+|+..
T Consensus 61 ~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~ 114 (220)
T cd04126 61 GSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTE 114 (220)
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 888999999999999999754433332 2333332 4689999999999864
No 194
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.63 E-value=6.3e-16 Score=153.37 Aligned_cols=156 Identities=17% Similarity=0.276 Sum_probs=117.1
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcc-eeEeecEEEEeecCeeEEEEeCCCCCC
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERG-ITITSAATTTYWNKHRINIIDTPGHVD 167 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g-iTi~~~~~~~~~~~~~i~liDTPG~~d 167 (608)
.-+.|+++|++|+|||||++.|+...... +. ....| +++ ....+.+++++||||+.
T Consensus 38 ~~~~i~ivG~~~~GKstl~~~l~~~~~~~----------~~------~~~~g~i~i------~~~~~~~i~~vDtPg~~- 94 (225)
T cd01882 38 PPLVVAVVGPPGVGKTTLIKSLVKNYTKQ----------NI------SDIKGPITV------VTGKKRRLTFIECPNDI- 94 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcccC----------cc------ccccccEEE------EecCCceEEEEeCCchH-
Confidence 34689999999999999999997331110 00 01122 121 22357889999999965
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEE-EEeCCCcCCC--cHHHHHHHHHHhhCCccE----
Q 007325 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRIC-FVNKMDRLGA--NFFRTRDMIVTNLGAKPL---- 240 (608)
Q Consensus 168 f~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~iv-viNK~D~~~~--~~~~~~~~i~~~l~~~~~---- 240 (608)
..+...++.+|.+++|+|+..+...++..++..+...++|.++ |+||+|+... ..++..+++++.+.....
T Consensus 95 --~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~k 172 (225)
T cd01882 95 --NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAK 172 (225)
T ss_pred --HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCc
Confidence 5667788999999999999999999999999999888999655 9999999643 355666777665442222
Q ss_pred --------EEeccCCCCCCeeeEEecccceeEEecCc
Q 007325 241 --------VVQLPVGAEDNFKGVVDLVKMKAIIWSGE 269 (608)
Q Consensus 241 --------~~~~pi~~~~~~~g~idl~~~~~~~~~~~ 269 (608)
+.++|.++..+|.+++|+++++++.|++.
T Consensus 173 i~~iSa~~~~~~~~~e~~~~~r~i~~~~~~~~~~r~~ 209 (225)
T cd01882 173 LFYLSGIVHGRYPKTEIHNLARFISVMKFRPLNWRNS 209 (225)
T ss_pred EEEEeeccCCCCCHHHHHHHHHHHHhCCCCCCeeecC
Confidence 45578888999999999999999999763
No 195
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.63 E-value=4.5e-15 Score=143.56 Aligned_cols=114 Identities=20% Similarity=0.176 Sum_probs=74.1
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchHH
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (608)
+|+++|.+|+|||||+++++..... .+.... + .+.+.......+......++||||||+.+|...
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~---~~~~~~-t-----------~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 66 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFL---NGNFIA-T-----------VGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSV 66 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC---ccCcCC-c-----------ccceeEEEEEEECCEEEEEEEEeCCCcHHHHHh
Confidence 6899999999999999999622110 000000 0 011111111222222367899999999999888
Q ss_pred HHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHHHh---cCCCEEEEEeCCCcC
Q 007325 172 VERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRL 220 (608)
Q Consensus 172 ~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~~~---~~~p~ivviNK~D~~ 220 (608)
....++.+|++|+|+|+++.........| ..+.. .++|+++|+||+|+.
T Consensus 67 ~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~ 119 (191)
T cd04112 67 THAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMS 119 (191)
T ss_pred hHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccch
Confidence 88889999999999999874333222222 23322 368999999999975
No 196
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.63 E-value=7.3e-15 Score=135.94 Aligned_cols=113 Identities=20% Similarity=0.207 Sum_probs=77.1
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchHH
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (608)
+|+++|.+|+|||||+++|......... ....+.+..............+++|||||+..|...
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 65 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENY----------------KSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSI 65 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCcc----------------CCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHH
Confidence 6899999999999999999622111100 001122222222222224578899999999999999
Q ss_pred HHHHHHhcCeEEEEEcCCCCCchhHHH-HHHHHHhc---CCCEEEEEeCCCcC
Q 007325 172 VERALRVLDGAICLFDSVAGVEPQSET-VWRQADKY---GVPRICFVNKMDRL 220 (608)
Q Consensus 172 ~~~~l~~~D~~i~VvDa~~g~~~~t~~-~~~~~~~~---~~p~ivviNK~D~~ 220 (608)
....++.+|++|+|+|+.+.-...... .+..+... ++|+++++||+|+.
T Consensus 66 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 118 (159)
T cd00154 66 TPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLE 118 (159)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccc
Confidence 999999999999999998743322222 23344443 48999999999975
No 197
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.63 E-value=8.2e-15 Score=139.34 Aligned_cols=110 Identities=19% Similarity=0.215 Sum_probs=76.6
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeec-EEEEeecC--eeEEEEeCCCCCC
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSA-ATTTYWNK--HRINIIDTPGHVD 167 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~-~~~~~~~~--~~i~liDTPG~~d 167 (608)
-+|+++|..|+|||||+++++. +.... . +.+ |+... ...+.+++ ..++||||||..+
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~--~~f~~--~---------~~~-------t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 62 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFIS--HSFPD--Y---------HDP-------TIEDAYKQQARIDNEPALLDILDTAGQAE 62 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHh--CCCCC--C---------cCC-------cccceEEEEEEECCEEEEEEEEeCCCchh
Confidence 3799999999999999999973 21110 0 000 11110 11223333 5689999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHHH----hcCCCEEEEEeCCCcC
Q 007325 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQAD----KYGVPRICFVNKMDRL 220 (608)
Q Consensus 168 f~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~~----~~~~p~ivviNK~D~~ 220 (608)
|......+++.+|++|+|+|.++........-| ..+. ..++|+++|+||+|+.
T Consensus 63 ~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~ 120 (172)
T cd04141 63 FTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLE 120 (172)
T ss_pred hHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhh
Confidence 999999999999999999999976655544322 2222 2478999999999975
No 198
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.63 E-value=1e-14 Score=136.86 Aligned_cols=110 Identities=18% Similarity=0.151 Sum_probs=73.9
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCCCCCCch
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFT 169 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~df~ 169 (608)
+|+++|.+|+|||||+++++. +..... ... +.. ......+..++ ..+.||||||+..|.
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~--~~~~~~--~~~--t~~-------------~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 63 (163)
T cd04176 3 KVVVLGSGGVGKSALTVQFVS--GTFIEK--YDP--TIE-------------DFYRKEIEVDSSPSVLEILDTAGTEQFA 63 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHc--CCCCCC--CCC--chh-------------heEEEEEEECCEEEEEEEEECCCccccc
Confidence 799999999999999999972 211110 000 000 01111222233 457899999999999
Q ss_pred HHHHHHHHhcCeEEEEEcCCCCCchhHHH-HHHHHHh----cCCCEEEEEeCCCcC
Q 007325 170 LEVERALRVLDGAICLFDSVAGVEPQSET-VWRQADK----YGVPRICFVNKMDRL 220 (608)
Q Consensus 170 ~~~~~~l~~~D~~i~VvDa~~g~~~~t~~-~~~~~~~----~~~p~ivviNK~D~~ 220 (608)
.....+++.+|++|+|+|.++....+... .+..+.. .++|+++|+||+|+.
T Consensus 64 ~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~ 119 (163)
T cd04176 64 SMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLE 119 (163)
T ss_pred chHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 98888999999999999998754322222 2223322 479999999999974
No 199
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.63 E-value=7.4e-15 Score=142.90 Aligned_cols=112 Identities=17% Similarity=0.159 Sum_probs=71.5
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCCCCCCch
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFT 169 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~df~ 169 (608)
+|+|+|.+|+|||||+++++... ... . +. ..++.......+.+++ +.+++|||||+.+|.
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~--f~~--~---------~~-----pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~ 63 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQE--FPE--E---------YI-----PTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYP 63 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCC--CCc--c---------cC-----CccccccceeEEEECCEEEEEEEEeCCCcccCC
Confidence 68999999999999999997321 110 0 00 0111111112233445 578899999987642
Q ss_pred ----HH----HHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHHH------hcCCCEEEEEeCCCcCC
Q 007325 170 ----LE----VERALRVLDGAICLFDSVAGVEPQSETVW-RQAD------KYGVPRICFVNKMDRLG 221 (608)
Q Consensus 170 ----~~----~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~~------~~~~p~ivviNK~D~~~ 221 (608)
.+ ...+++.+|++|+|+|+++....+....| +.+. ..++|+++|.||+|+..
T Consensus 64 ~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~ 130 (198)
T cd04142 64 GTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQR 130 (198)
T ss_pred ccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccc
Confidence 12 34567889999999999975444433333 2222 24689999999999853
No 200
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.63 E-value=1e-14 Score=141.02 Aligned_cols=109 Identities=17% Similarity=0.244 Sum_probs=73.7
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeec-EEEEeecC--eeEEEEeCCCCCCc
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSA-ATTTYWNK--HRINIIDTPGHVDF 168 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~-~~~~~~~~--~~i~liDTPG~~df 168 (608)
+|+++|.+|+|||||+++|+... ... ++.+ |+... ...+..++ ..+.+|||||+.+|
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~--f~~-----------~~~~-------t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 60 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNH--FVE-----------TYDP-------TIEDSYRKQVVVDGQPCMLEVLDTAGQEEY 60 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCc-----------cCCC-------chHhhEEEEEEECCEEEEEEEEECCCchhh
Confidence 48899999999999999997321 110 0000 11000 11122233 45889999999999
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCCCchhHHH-HHHHHHh------cCCCEEEEEeCCCcC
Q 007325 169 TLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQADK------YGVPRICFVNKMDRL 220 (608)
Q Consensus 169 ~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~-~~~~~~~------~~~p~ivviNK~D~~ 220 (608)
......+++.+|++|+|+|.++........ .+..+.. .++|+++|+||+|+.
T Consensus 61 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~ 119 (190)
T cd04144 61 TALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV 119 (190)
T ss_pred HHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcc
Confidence 998899999999999999998754333322 2333322 468999999999975
No 201
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.62 E-value=1e-14 Score=139.36 Aligned_cols=111 Identities=16% Similarity=0.201 Sum_probs=75.9
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeec--CeeEEEEeCCCCCCc
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGHVDF 168 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG~~df 168 (608)
++|+++|++|+|||||+++++.... .+...+ .+.......+.+. ++.+.+|||||+.+|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~----~~~~~~---------------t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 62 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHF----VESYYP---------------TIENTFSKIIRYKGQDYHLEIVDTAGQDEY 62 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC----ccccCc---------------chhhhEEEEEEECCEEEEEEEEECCChHhh
Confidence 5899999999999999999973211 010000 0000011122222 356899999999999
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCCCchhHHHH-HHHHH----hcCCCEEEEEeCCCcC
Q 007325 169 TLEVERALRVLDGAICLFDSVAGVEPQSETV-WRQAD----KYGVPRICFVNKMDRL 220 (608)
Q Consensus 169 ~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~-~~~~~----~~~~p~ivviNK~D~~ 220 (608)
......++..+|++++|+|.++....+.... +..+. ..++|+++|+||+|+.
T Consensus 63 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 119 (180)
T cd04137 63 SILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLH 119 (180)
T ss_pred HHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhh
Confidence 8888899999999999999997544333322 23332 2468999999999975
No 202
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.62 E-value=5.8e-15 Score=139.94 Aligned_cols=109 Identities=17% Similarity=0.187 Sum_probs=74.3
Q ss_pred EEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeec-CeeEEEEeCCCCCC------
Q 007325 95 IMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-KHRINIIDTPGHVD------ 167 (608)
Q Consensus 95 ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~-~~~i~liDTPG~~d------ 167 (608)
|+|.+|+|||||+++|.... ... ....+.|+......+.++ +..+++|||||+.+
T Consensus 1 iiG~~~~GKStll~~l~~~~---~~~---------------~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~ 62 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAK---PKV---------------ANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGR 62 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCC---ccc---------------cCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCC
Confidence 58999999999999996221 011 111344666666667777 89999999999844
Q ss_pred -chHHHHHHHHhcCeEEEEEcCCCCC-----c-hhH-HHHHHHHH----------hcCCCEEEEEeCCCcCC
Q 007325 168 -FTLEVERALRVLDGAICLFDSVAGV-----E-PQS-ETVWRQAD----------KYGVPRICFVNKMDRLG 221 (608)
Q Consensus 168 -f~~~~~~~l~~~D~~i~VvDa~~g~-----~-~~t-~~~~~~~~----------~~~~p~ivviNK~D~~~ 221 (608)
+.......++.+|++++|+|+.+.. . ... ...+..+. ..++|+++|+||+|+..
T Consensus 63 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 134 (176)
T cd01881 63 GLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDD 134 (176)
T ss_pred CccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCc
Confidence 2234556778899999999998762 1 111 12222222 14799999999999864
No 203
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.62 E-value=1.1e-14 Score=137.63 Aligned_cols=113 Identities=16% Similarity=0.102 Sum_probs=75.9
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeec--CeeEEEEeCCCCCC
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGHVD 167 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG~~d 167 (608)
..+|+++|.+|+|||||+++++.. .... +....+........+.++ ...+.||||||+.+
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~~~--~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~ 66 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYVTN--KFDT----------------QLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQER 66 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC--CCCc----------------CcCCceeeEEEEEEEEECCeEEEEEEEeCCChHH
Confidence 468999999999999999999721 1100 000111112112223333 35678999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHH-HH-------hcCCCEEEEEeCCCcC
Q 007325 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQ-AD-------KYGVPRICFVNKMDRL 220 (608)
Q Consensus 168 f~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~-~~-------~~~~p~ivviNK~D~~ 220 (608)
|.......++.+|++|+|+|.++....+....|.. +. ..++|+++|+||+|+.
T Consensus 67 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (170)
T cd04116 67 FRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP 127 (170)
T ss_pred HHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc
Confidence 99988999999999999999986543333333321 11 2468999999999975
No 204
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.62 E-value=8.4e-15 Score=158.67 Aligned_cols=115 Identities=19% Similarity=0.153 Sum_probs=87.5
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCc
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 168 (608)
...+|+++|++|+|||||+|+|+.....+ + ....|+|.+.....+.+++..+++|||||+.++
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~ai-----------v------s~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~ 264 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAI-----------V------SDIKGTTRDVVEGDFELNGILIKLLDTAGIREH 264 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcc-----------c------CCCCCcEEEEEEEEEEECCEEEEEeeCCCcccc
Confidence 34689999999999999999997321111 1 112456777777788889999999999999775
Q ss_pred hHH--------HHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCC
Q 007325 169 TLE--------VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (608)
Q Consensus 169 ~~~--------~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~ 221 (608)
... ...+++.+|++|+|+|++++...... .+..+...++|+++|+||+|+..
T Consensus 265 ~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~ 324 (442)
T TIGR00450 265 ADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKI 324 (442)
T ss_pred hhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCCC
Confidence 433 24577889999999999987665544 55566667899999999999854
No 205
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.62 E-value=1.3e-14 Score=135.01 Aligned_cols=111 Identities=19% Similarity=0.156 Sum_probs=75.3
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeec--CeeEEEEeCCCCCCch
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGHVDFT 169 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG~~df~ 169 (608)
+|+++|++|+|||||+++|+.... .... .+ .+.......+..+ ...+.+|||||+.++.
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~----~~~~---------~~------~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 61 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF----VEEY---------DP------TIEDSYRKTIVVDGETYTLDILDTAGQEEFS 61 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC----CcCc---------CC------ChhHeEEEEEEECCEEEEEEEEECCChHHHH
Confidence 589999999999999999973210 0110 00 0111112222333 4678999999999999
Q ss_pred HHHHHHHHhcCeEEEEEcCCCCCchh-HHHHHHHHHh----cCCCEEEEEeCCCcCC
Q 007325 170 LEVERALRVLDGAICLFDSVAGVEPQ-SETVWRQADK----YGVPRICFVNKMDRLG 221 (608)
Q Consensus 170 ~~~~~~l~~~D~~i~VvDa~~g~~~~-t~~~~~~~~~----~~~p~ivviNK~D~~~ 221 (608)
......++.+|++++|+|.++..... ....+..+.. .++|+++|+||+|+..
T Consensus 62 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 118 (160)
T cd00876 62 AMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLEN 118 (160)
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccc
Confidence 99999999999999999998643222 2233333322 4799999999999764
No 206
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=99.62 E-value=2e-15 Score=128.34 Aligned_cols=82 Identities=30% Similarity=0.410 Sum_probs=74.8
Q ss_pred eEEEEEEeeecC-CCceEEEEEEecceeCCCCEEEeCC---------CCceeecceEEEeecCceeecCeeecCCEEEEc
Q 007325 390 FAGLAFKIMSDP-FVGSLTFVRVYAGTLSAGSYVLNAN---------KGKKERIGRLLEMHANSREDVKVALAGDIIALA 459 (608)
Q Consensus 390 ~~~~V~K~~~d~-~~G~la~~RV~sG~l~~g~~v~~~~---------~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~ 459 (608)
++++|||+..++ +.|+++|+|||||+|++||.|++.. ..+.+++++|+.++|.++.++++|.|||||+|.
T Consensus 1 ~v~~v~Ki~~~~~~~g~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~ 80 (93)
T cd03700 1 LVMYVTKMVPTPDKGGFIAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNIVLIV 80 (93)
T ss_pred CeEEEEeCeECCCCCEEEEEEEEeeCeEeCCCEEEEECCCCCCCccCcEEEEEEeEEEEEcCCCEEEccccCCCCEEEEE
Confidence 478999999999 8999999999999999999998765 334588999999999999999999999999999
Q ss_pred CCCcccccceec
Q 007325 460 GLKDTITGETLC 471 (608)
Q Consensus 460 gl~~~~~GdtL~ 471 (608)
|++++.+|||.+
T Consensus 81 g~~~~~~g~~~~ 92 (93)
T cd03700 81 GLDQLKSGTTAT 92 (93)
T ss_pred CCccCceEeEec
Confidence 999999998754
No 207
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.62 E-value=1.4e-14 Score=142.92 Aligned_cols=111 Identities=13% Similarity=0.064 Sum_probs=75.2
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeec---CeeEEEEeCCCCCCc
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN---KHRINIIDTPGHVDF 168 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~---~~~i~liDTPG~~df 168 (608)
+|+++|.+|+|||||+++|+.... . ..+ ..-++.+.....+.+. ...++||||||+..|
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~--~-----------~~~-----~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~ 63 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGF--G-----------KSY-----KQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIG 63 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC--C-----------CCC-----CCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHH
Confidence 689999999999999999962211 0 000 0111222222333332 468899999999999
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHHHh------cCCCEEEEEeCCCcC
Q 007325 169 TLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK------YGVPRICFVNKMDRL 220 (608)
Q Consensus 169 ~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~~~------~~~p~ivviNK~D~~ 220 (608)
.......++.+|++|+|+|+++.-.......| ..+.. .+.|+++|.||+|+.
T Consensus 64 ~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~ 122 (215)
T cd04109 64 GKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLE 122 (215)
T ss_pred HHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccc
Confidence 88888899999999999999865333333223 33332 235788999999985
No 208
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.62 E-value=7.9e-15 Score=138.06 Aligned_cols=112 Identities=24% Similarity=0.295 Sum_probs=72.8
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCC-chH
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD-FTL 170 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d-f~~ 170 (608)
+|+++|.+|+|||||+++++. +.. .+. +.+.. + +.......+......+.+|||||+.. +..
T Consensus 1 ki~vvG~~~~GKtsli~~~~~--~~~--~~~---------~~~t~---~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 63 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLT--KRF--IGE---------YDPNL---E-SLYSRQVTIDGEQVSLEILDTAGQQQADTE 63 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHh--Ccc--ccc---------cCCCh---H-HhceEEEEECCEEEEEEEEECCCCcccccc
Confidence 489999999999999999972 111 011 10000 0 11111122222335688999999985 456
Q ss_pred HHHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHHH-----hcCCCEEEEEeCCCcC
Q 007325 171 EVERALRVLDGAICLFDSVAGVEPQSETVW-RQAD-----KYGVPRICFVNKMDRL 220 (608)
Q Consensus 171 ~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~~-----~~~~p~ivviNK~D~~ 220 (608)
.....++.+|++|+|+|+++.........| ..+. ..++|+++|+||+|+.
T Consensus 64 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 119 (165)
T cd04146 64 QLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLL 119 (165)
T ss_pred hHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchH
Confidence 678889999999999999976444333333 2222 2379999999999974
No 209
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.61 E-value=5.6e-15 Score=140.90 Aligned_cols=114 Identities=22% Similarity=0.177 Sum_probs=86.1
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 167 (608)
++..+|+++|..|||||||+++|. .+.... . .-|.......+.+++..+.++|.+|+..
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~--~~~~~~---~----------------~pT~g~~~~~i~~~~~~~~~~d~gG~~~ 70 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLK--NGEISE---T----------------IPTIGFNIEEIKYKGYSLTIWDLGGQES 70 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHH--SSSEEE---E----------------EEESSEEEEEEEETTEEEEEEEESSSGG
T ss_pred CcEEEEEEECCCccchHHHHHHhh--hccccc---c----------------CcccccccceeeeCcEEEEEEecccccc
Confidence 456799999999999999999995 221111 1 1155566677788999999999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCCC-chhHHHHHHHHH----hcCCCEEEEEeCCCcCCC
Q 007325 168 FTLEVERALRVLDGAICLFDSVAGV-EPQSETVWRQAD----KYGVPRICFVNKMDRLGA 222 (608)
Q Consensus 168 f~~~~~~~l~~~D~~i~VvDa~~g~-~~~t~~~~~~~~----~~~~p~ivviNK~D~~~~ 222 (608)
+...+..++..+|++|+|||+++.- .....+.+..+. ..++|+++++||.|+.++
T Consensus 71 ~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~ 130 (175)
T PF00025_consen 71 FRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA 130 (175)
T ss_dssp GGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS
T ss_pred ccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc
Confidence 9888999999999999999999642 122333333332 247899999999998764
No 210
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.61 E-value=2.9e-14 Score=135.99 Aligned_cols=111 Identities=14% Similarity=0.100 Sum_probs=76.2
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecE-EEEeecC--eeEEEEeCCCCCC
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAA-TTTYWNK--HRINIIDTPGHVD 167 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~-~~~~~~~--~~i~liDTPG~~d 167 (608)
.+|+++|..|+|||||+.++++..- .. ++.+ |+.... ..+..++ ..++||||||+.+
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f--~~-----------~~~p-------t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 61 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKF--PS-----------EYVP-------TVFDNYAVTVMIGGEPYTLGLFDTAGQED 61 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--CC-----------CCCC-------ceeeeeEEEEEECCEEEEEEEEECCCccc
Confidence 4799999999999999999973211 00 0000 111111 1223334 6788999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCCCchhHH-HHHH-HHHh--cCCCEEEEEeCCCcCC
Q 007325 168 FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWR-QADK--YGVPRICFVNKMDRLG 221 (608)
Q Consensus 168 f~~~~~~~l~~~D~~i~VvDa~~g~~~~t~-~~~~-~~~~--~~~p~ivviNK~D~~~ 221 (608)
|......+++.+|++|+|+|.++....... ..|. .+.. .++|+++|.||+|+..
T Consensus 62 ~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~ 119 (175)
T cd01874 62 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 119 (175)
T ss_pred hhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhh
Confidence 988777889999999999999875444433 2343 2322 3689999999999854
No 211
>PLN03110 Rab GTPase; Provisional
Probab=99.61 E-value=7.1e-15 Score=145.10 Aligned_cols=115 Identities=17% Similarity=0.127 Sum_probs=79.7
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeec--CeeEEEEeCCCC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGH 165 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG~ 165 (608)
+...+|+++|++|+|||||+++|+...... ++ ...+..+.....+.++ ...++||||||+
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~-------------~~-----~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~ 71 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCL-------------ES-----KSTIGVEFATRTLQVEGKTVKAQIWDTAGQ 71 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCC-------------CC-----CCceeEEEEEEEEEECCEEEEEEEEECCCc
Confidence 345799999999999999999996221100 00 0111222222333333 358899999999
Q ss_pred CCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHHHh---cCCCEEEEEeCCCcC
Q 007325 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRL 220 (608)
Q Consensus 166 ~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~~~---~~~p~ivviNK~D~~ 220 (608)
.+|.......++.+|++|+|+|.++....+....| ..+.. .++|+++|.||+|+.
T Consensus 72 ~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~ 130 (216)
T PLN03110 72 ERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLN 130 (216)
T ss_pred HHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcc
Confidence 99999899999999999999999875444443333 33332 478999999999974
No 212
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.61 E-value=1.8e-14 Score=135.24 Aligned_cols=116 Identities=15% Similarity=0.125 Sum_probs=75.9
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEe-ecCeeEEEEeCCCCCCchH
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY-WNKHRINIIDTPGHVDFTL 170 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~-~~~~~i~liDTPG~~df~~ 170 (608)
+|+++|.+|+|||||+++|........ +.. . ...|..+......+. .....+.+|||||+..|..
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~--~~~---------~---~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 67 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFP--KNY---------L---MTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSD 67 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcC--ccC---------C---CceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHH
Confidence 689999999999999999963211110 000 0 001112111122221 2347899999999998888
Q ss_pred HHHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHHHh--cCCCEEEEEeCCCcCC
Q 007325 171 EVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK--YGVPRICFVNKMDRLG 221 (608)
Q Consensus 171 ~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~~~--~~~p~ivviNK~D~~~ 221 (608)
.....++.+|++++|+|.++.........| ..+.. .++|+++|+||+|+..
T Consensus 68 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 121 (164)
T cd04101 68 MVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLAD 121 (164)
T ss_pred HHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccc
Confidence 888899999999999999865333322223 33333 3689999999999753
No 213
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.61 E-value=1.2e-14 Score=138.02 Aligned_cols=112 Identities=18% Similarity=0.135 Sum_probs=74.1
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeec--CeeEEEEeCCCCCCch
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGHVDFT 169 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG~~df~ 169 (608)
+|+++|..|+|||||+++++...- .. .+. ..+........+..+ ...+++|||||+.+|.
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f--~~-----------~~~-----~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 63 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVF--DK-----------NYK-----ATIGVDFEMERFEILGVPFSLQLWDTAGQERFK 63 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC--CC-----------CCC-----CceeeEEEEEEEEECCEEEEEEEEeCCChHHHH
Confidence 589999999999999999973211 00 000 011111111222233 3579999999999999
Q ss_pred HHHHHHHHhcCeEEEEEcCCCCCchhHHHHHH-HHHhc----CCCEEEEEeCCCcCC
Q 007325 170 LEVERALRVLDGAICLFDSVAGVEPQSETVWR-QADKY----GVPRICFVNKMDRLG 221 (608)
Q Consensus 170 ~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~-~~~~~----~~p~ivviNK~D~~~ 221 (608)
......++.+|++|+|+|+++.........|. .+.+. ..|+++|.||+|+..
T Consensus 64 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~ 120 (170)
T cd04108 64 CIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSS 120 (170)
T ss_pred hhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCc
Confidence 88899999999999999998743333333332 33232 256899999999753
No 214
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.61 E-value=1.5e-14 Score=137.25 Aligned_cols=111 Identities=15% Similarity=0.117 Sum_probs=74.4
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeE-eecEEEEeec--CeeEEEEeCCCCCCc
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITI-TSAATTTYWN--KHRINIIDTPGHVDF 168 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi-~~~~~~~~~~--~~~i~liDTPG~~df 168 (608)
+|+++|++|+|||||+++++.... ... +.+ |+ ......+.++ .+.+.+|||||+.+|
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~--~~~-----------~~~-------t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 61 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAF--PEE-----------YVP-------TVFDHYAVSVTVGGKQYLLGLYDTAGQEDY 61 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--CCC-----------CCC-------ceeeeeEEEEEECCEEEEEEEEeCCCcccc
Confidence 689999999999999999973221 000 000 11 0111122233 356889999999999
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCCCchhHHH-HH-HHHH--hcCCCEEEEEeCCCcCCC
Q 007325 169 TLEVERALRVLDGAICLFDSVAGVEPQSET-VW-RQAD--KYGVPRICFVNKMDRLGA 222 (608)
Q Consensus 169 ~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~-~~-~~~~--~~~~p~ivviNK~D~~~~ 222 (608)
.......++.+|++|+|+|..+.-..+... .| ..+. ..++|+++|+||+|+...
T Consensus 62 ~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~ 119 (174)
T cd04135 62 DRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDD 119 (174)
T ss_pred cccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcC
Confidence 887777888999999999998754433321 22 2222 357999999999998643
No 215
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.61 E-value=2.9e-14 Score=137.62 Aligned_cols=114 Identities=18% Similarity=0.231 Sum_probs=79.3
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCCCCC
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHV 166 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~ 166 (608)
...+|+++|..++|||||+.++.... ... .+ ...++.......+..++ ..+++|||||+.
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~--~~~-----------~~-----~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~ 66 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGS--TES-----------PY-----GYNMGIDYKTTTILLDGRRVKLQLWDTSGQG 66 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCC--CCC-----------CC-----CCcceeEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 35689999999999999999996211 100 00 01112222222333333 678999999999
Q ss_pred CchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHHHh--cCCCEEEEEeCCCcC
Q 007325 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK--YGVPRICFVNKMDRL 220 (608)
Q Consensus 167 df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~~~--~~~p~ivviNK~D~~ 220 (608)
+|...+..+++.+|++|+|+|.++.........| .++.. .++|+++|.||+|+.
T Consensus 67 ~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~ 123 (189)
T cd04121 67 RFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLA 123 (189)
T ss_pred HHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccch
Confidence 9998888899999999999999975544444333 33332 478999999999985
No 216
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.60 E-value=4.4e-15 Score=126.39 Aligned_cols=81 Identities=23% Similarity=0.287 Sum_probs=70.8
Q ss_pred eEEEEEEeeecCCC-ceEEEEEEecceeCCCCEEEeCCC---------CceeecceEEEeecCceeecCeeecCCEEEEc
Q 007325 390 FAGLAFKIMSDPFV-GSLTFVRVYAGTLSAGSYVLNANK---------GKKERIGRLLEMHANSREDVKVALAGDIIALA 459 (608)
Q Consensus 390 ~~~~V~K~~~d~~~-G~la~~RV~sG~l~~g~~v~~~~~---------~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~ 459 (608)
++++|||+..+|+. |+++|+|||||+|++||.|++... ...++|++|+.++|.+..++++|.|||||+|.
T Consensus 1 ~~a~VfK~~~~~~~~~~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~v~ 80 (94)
T cd04090 1 LVVHVTKLYSTSDGGSFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRYKIEVNEAPAGNWVLIK 80 (94)
T ss_pred CEEEEEeeeecCCCCEEEEEEEEeeCeEcCCCEEEEECCCCCCccCCcEEEEEEeEEEEecCCCEEEcceeCCCCEEEEE
Confidence 47899999999997 679999999999999999986322 13589999999999999999999999999999
Q ss_pred CCCccccccee
Q 007325 460 GLKDTITGETL 470 (608)
Q Consensus 460 gl~~~~~GdtL 470 (608)
|+++..++.+.
T Consensus 81 gl~~~~~~~~t 91 (94)
T cd04090 81 GIDSSIVKTAT 91 (94)
T ss_pred CcchheeceEE
Confidence 99997665443
No 217
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.60 E-value=8.2e-15 Score=153.87 Aligned_cols=118 Identities=18% Similarity=0.198 Sum_probs=93.9
Q ss_pred CCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCC
Q 007325 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (608)
Q Consensus 87 ~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 166 (608)
..+-.+++|+|.||+|||||+|+|+....+ + ++| -.|+|.+.-...+..+|+.+.++||.|..
T Consensus 214 lr~G~kvvIiG~PNvGKSSLLNaL~~~d~A---I--------VTd------I~GTTRDviee~i~i~G~pv~l~DTAGiR 276 (454)
T COG0486 214 LREGLKVVIIGRPNVGKSSLLNALLGRDRA---I--------VTD------IAGTTRDVIEEDINLNGIPVRLVDTAGIR 276 (454)
T ss_pred hhcCceEEEECCCCCcHHHHHHHHhcCCce---E--------ecC------CCCCccceEEEEEEECCEEEEEEecCCcc
Confidence 344578999999999999999999733222 2 122 25779999999999999999999999987
Q ss_pred CchHH--------HHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCC
Q 007325 167 DFTLE--------VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (608)
Q Consensus 167 df~~~--------~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (608)
+-... ....+..||.+++|+|++++...+....+. +...+.|+++|+||+|+...
T Consensus 277 et~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~ 339 (454)
T COG0486 277 ETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSK 339 (454)
T ss_pred cCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhcccc
Confidence 64333 344678899999999999987777776666 56678999999999998764
No 218
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.60 E-value=1.7e-14 Score=142.60 Aligned_cols=116 Identities=24% Similarity=0.213 Sum_probs=79.1
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCc
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 168 (608)
...+|+++|..|+|||||+++++. +..... + ....|+++.............+.+|||||+.+|
T Consensus 12 ~~~Ki~vvG~~gvGKTsli~~~~~--~~f~~~-----------~---~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 75 (219)
T PLN03071 12 PSFKLVIVGDGGTGKTTFVKRHLT--GEFEKK-----------Y---EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (219)
T ss_pred CceEEEEECcCCCCHHHHHHHHhh--CCCCCc-----------c---CCccceeEEEEEEEECCeEEEEEEEECCCchhh
Confidence 346899999999999999999862 211100 0 011122222222222223468999999999999
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHH-HHH--hcCCCEEEEEeCCCcC
Q 007325 169 TLEVERALRVLDGAICLFDSVAGVEPQSETVWR-QAD--KYGVPRICFVNKMDRL 220 (608)
Q Consensus 169 ~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~-~~~--~~~~p~ivviNK~D~~ 220 (608)
......+++.+|++|+|+|.++....+...-|. .+. ..++|+++|.||+|+.
T Consensus 76 ~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~ 130 (219)
T PLN03071 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (219)
T ss_pred hhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhh
Confidence 888888899999999999999765544444442 222 2478999999999974
No 219
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.60 E-value=6.8e-15 Score=146.04 Aligned_cols=126 Identities=19% Similarity=0.271 Sum_probs=92.3
Q ss_pred hhhhhccCCCCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCee-
Q 007325 78 AEESKRVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHR- 156 (608)
Q Consensus 78 ~~~~~~~~~~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~- 156 (608)
.++..-..+.+.+..|++||.||||||||+++|. .+..+++.+. + +|+.+......++++.
T Consensus 184 G~e~~~~lELKsiadvGLVG~PNAGKSTLL~als---~AKpkVa~Ya---F------------TTL~P~iG~v~yddf~q 245 (366)
T KOG1489|consen 184 GEERVIELELKSIADVGLVGFPNAGKSTLLNALS---RAKPKVAHYA---F------------TTLRPHIGTVNYDDFSQ 245 (366)
T ss_pred CceEEEEEEeeeecccceecCCCCcHHHHHHHhh---ccCCcccccc---e------------eeeccccceeeccccce
Confidence 3333344566778999999999999999999994 4444444431 1 3888888888887765
Q ss_pred EEEEeCCCCCC-------chHHHHHHHHhcCeEEEEEcCCCCC----chhHHHHHHHHHh-----cCCCEEEEEeCCCcC
Q 007325 157 INIIDTPGHVD-------FTLEVERALRVLDGAICLFDSVAGV----EPQSETVWRQADK-----YGVPRICFVNKMDRL 220 (608)
Q Consensus 157 i~liDTPG~~d-------f~~~~~~~l~~~D~~i~VvDa~~g~----~~~t~~~~~~~~~-----~~~p~ivviNK~D~~ 220 (608)
+.+-|.||.+. ......+.+..++..++|||.+.+. -.+...+|..+.. .+.|.++|+||+|.+
T Consensus 246 ~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ 325 (366)
T KOG1489|consen 246 ITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLP 325 (366)
T ss_pred eEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCch
Confidence 99999999875 4556777888899999999999762 2233344555543 357999999999986
Q ss_pred C
Q 007325 221 G 221 (608)
Q Consensus 221 ~ 221 (608)
.
T Consensus 326 e 326 (366)
T KOG1489|consen 326 E 326 (366)
T ss_pred h
Confidence 3
No 220
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.59 E-value=3.1e-14 Score=143.12 Aligned_cols=109 Identities=21% Similarity=0.190 Sum_probs=73.1
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeE-eecEEEEeec--CeeEEEEeCCCCCCc
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITI-TSAATTTYWN--KHRINIIDTPGHVDF 168 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi-~~~~~~~~~~--~~~i~liDTPG~~df 168 (608)
+|+++|..|+|||||+++++. +.... . +.+ |+ +.....+..+ .+.++||||+|+.+|
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~--~~f~~--~---------y~p-------Ti~d~~~k~~~i~~~~~~l~I~Dt~G~~~~ 61 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLG--GRFEE--Q---------YTP-------TIEDFHRKLYSIRGEVYQLDILDTSGNHPF 61 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHc--CCCCC--C---------CCC-------ChhHhEEEEEEECCEEEEEEEEECCCChhh
Confidence 689999999999999999972 21110 0 000 11 1111122233 367899999999999
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCCCchhHHH-HHHHHHh------------cCCCEEEEEeCCCcC
Q 007325 169 TLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQADK------------YGVPRICFVNKMDRL 220 (608)
Q Consensus 169 ~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~-~~~~~~~------------~~~p~ivviNK~D~~ 220 (608)
......++..+|++|+|+|.++....+... +++.+.. .++|+++|+||+|+.
T Consensus 62 ~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~ 126 (247)
T cd04143 62 PAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRD 126 (247)
T ss_pred hHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccch
Confidence 887777888999999999998753332222 2223321 368999999999985
No 221
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.58 E-value=2.1e-14 Score=139.71 Aligned_cols=109 Identities=25% Similarity=0.275 Sum_probs=75.5
Q ss_pred EcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchHHHHHH
Q 007325 96 MAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERA 175 (608)
Q Consensus 96 vG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~ 175 (608)
+|..|+|||||++++++ +.... .+.+ .-|++.......+.-....+.||||||+.+|......+
T Consensus 1 vG~~~vGKTsLi~r~~~--~~f~~-----------~~~~---Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~ 64 (200)
T smart00176 1 VGDGGTGKTTFVKRHLT--GEFEK-----------KYVA---TLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGY 64 (200)
T ss_pred CCCCCCCHHHHHHHHhc--CCCCC-----------CCCC---ceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHH
Confidence 69999999999999972 21110 0000 01122222222222235689999999999999999999
Q ss_pred HHhcCeEEEEEcCCCCCchhHHHHHHH-HHh--cCCCEEEEEeCCCcC
Q 007325 176 LRVLDGAICLFDSVAGVEPQSETVWRQ-ADK--YGVPRICFVNKMDRL 220 (608)
Q Consensus 176 l~~~D~~i~VvDa~~g~~~~t~~~~~~-~~~--~~~p~ivviNK~D~~ 220 (608)
++.+|++|+|+|.+..........|.. +.+ .++|+++|.||+|+.
T Consensus 65 ~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~ 112 (200)
T smart00176 65 YIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVK 112 (200)
T ss_pred hcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 999999999999998766555544543 433 478999999999974
No 222
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.58 E-value=3.7e-14 Score=137.19 Aligned_cols=113 Identities=15% Similarity=0.127 Sum_probs=74.2
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCCCCCCch
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFT 169 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~df~ 169 (608)
+|+++|.+|+|||||+++|+...... +. +. ...|.+.... .+..++ ..+++|||||..+|.
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~---~~---------~~---~t~~~~~~~~--~~~~~~~~~~l~i~D~~G~~~~~ 64 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLV---GP---------YQ---NTIGAAFVAK--RMVVGERVVTLGIWDTAGSERYE 64 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCC---cC---------cc---cceeeEEEEE--EEEECCEEEEEEEEECCCchhhh
Confidence 68999999999999999997321100 00 00 0011112111 233333 467799999999888
Q ss_pred HHHHHHHHhcCeEEEEEcCCCCCchhHHH-HHHHHHh--cCCCEEEEEeCCCcCC
Q 007325 170 LEVERALRVLDGAICLFDSVAGVEPQSET-VWRQADK--YGVPRICFVNKMDRLG 221 (608)
Q Consensus 170 ~~~~~~l~~~D~~i~VvDa~~g~~~~t~~-~~~~~~~--~~~p~ivviNK~D~~~ 221 (608)
......++.+|++|+|+|.++........ .+..+.. .++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 119 (193)
T cd04118 65 AMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIE 119 (193)
T ss_pred hhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccc
Confidence 77777888999999999998753333222 2333333 3689999999999754
No 223
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.58 E-value=3.9e-14 Score=136.24 Aligned_cols=110 Identities=14% Similarity=0.053 Sum_probs=74.0
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecE-EEEee---cCeeEEEEeCCCCCC
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAA-TTTYW---NKHRINIIDTPGHVD 167 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~-~~~~~---~~~~i~liDTPG~~d 167 (608)
+|+++|..|+|||||+++|+...- .. ++. .|+.... ..+.. ....+.+|||||+.+
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~--~~-----------~~~-------~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~ 61 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKF--PE-----------EYV-------PTVFENYVTNIQGPNGKIIELALWDTAGQEE 61 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcC--CC-----------CCC-------CeeeeeeEEEEEecCCcEEEEEEEECCCchh
Confidence 789999999999999999973211 00 000 0111111 11222 235789999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCCCchhHH-HHHHH-HH--hcCCCEEEEEeCCCcCC
Q 007325 168 FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQ-AD--KYGVPRICFVNKMDRLG 221 (608)
Q Consensus 168 f~~~~~~~l~~~D~~i~VvDa~~g~~~~t~-~~~~~-~~--~~~~p~ivviNK~D~~~ 221 (608)
|.......++.+|++|+|+|.++....+.. ..|.. .. ..++|+++|+||+|+..
T Consensus 62 ~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 119 (187)
T cd04132 62 YDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRK 119 (187)
T ss_pred HHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhh
Confidence 988877788999999999999875443333 22322 22 24789999999999854
No 224
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.58 E-value=3.9e-14 Score=136.80 Aligned_cols=115 Identities=14% Similarity=0.019 Sum_probs=75.3
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchH
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~ 170 (608)
++|+++|..|+|||||+++++. +.... ...+ +. +... .....+......++||||||+.+|..
T Consensus 1 ~kivivG~~~vGKTsli~~~~~--~~~~~--~~~~--t~----------~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~ 63 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTR--GYFPQ--VYEP--TV----------FENY-VHDIFVDGLHIELSLWDTAGQEEFDR 63 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhc--CCCCC--ccCC--cc----------eeee-EEEEEECCEEEEEEEEECCCChhccc
Confidence 4799999999999999999972 21100 0000 00 0000 01111222236789999999999877
Q ss_pred HHHHHHHhcCeEEEEEcCCCCCchhHHH--HHHHHHh--cCCCEEEEEeCCCcCCC
Q 007325 171 EVERALRVLDGAICLFDSVAGVEPQSET--VWRQADK--YGVPRICFVNKMDRLGA 222 (608)
Q Consensus 171 ~~~~~l~~~D~~i~VvDa~~g~~~~t~~--~~~~~~~--~~~p~ivviNK~D~~~~ 222 (608)
....+++.+|++|+|+|.++....+... .+..+.. .++|+++|.||+|+...
T Consensus 64 l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~ 119 (189)
T cd04134 64 LRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREA 119 (189)
T ss_pred cccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccC
Confidence 7777888999999999998754444332 2233332 37899999999998654
No 225
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.58 E-value=2.1e-14 Score=135.57 Aligned_cols=114 Identities=15% Similarity=0.026 Sum_probs=73.6
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchHH
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (608)
+|+++|.+|+|||||+++|+...-...... +. .........+......+.+|||||+.+|...
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~~~~~~------~~-----------~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~ 64 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFPTEYVP------TV-----------FDNYSATVTVDGKQVNLGLWDTAGQEEYDRL 64 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCC------ce-----------eeeeEEEEEECCEEEEEEEEeCCCccccccc
Confidence 689999999999999999973211000000 00 0001111122223467999999999988766
Q ss_pred HHHHHHhcCeEEEEEcCCCCCchhHH--HHHHHHHh--cCCCEEEEEeCCCcCCC
Q 007325 172 VERALRVLDGAICLFDSVAGVEPQSE--TVWRQADK--YGVPRICFVNKMDRLGA 222 (608)
Q Consensus 172 ~~~~l~~~D~~i~VvDa~~g~~~~t~--~~~~~~~~--~~~p~ivviNK~D~~~~ 222 (608)
....++.+|++++|+|+++....... ..+..+.. .++|+++|+||+|+...
T Consensus 65 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 119 (171)
T cd00157 65 RPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDD 119 (171)
T ss_pred chhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhc
Confidence 66777889999999999874332221 22233333 35999999999998654
No 226
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.58 E-value=2.1e-14 Score=160.89 Aligned_cols=104 Identities=24% Similarity=0.292 Sum_probs=78.3
Q ss_pred cCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchHH-----
Q 007325 97 AHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE----- 171 (608)
Q Consensus 97 G~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~----- 171 (608)
|.+|+|||||+|+|. |.....+ ..+|+|++.....+.+++..+++|||||+.++...
T Consensus 1 G~pNvGKSSL~N~Lt---g~~~~v~---------------n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~ 62 (591)
T TIGR00437 1 GNPNVGKSTLFNALT---GANQTVG---------------NWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEE 62 (591)
T ss_pred CCCCCCHHHHHHHHh---CCCCeec---------------CCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHH
Confidence 889999999999995 3221111 13678998888888889999999999999887532
Q ss_pred HHH-HH--HhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcC
Q 007325 172 VER-AL--RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (608)
Q Consensus 172 ~~~-~l--~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~ 220 (608)
+.+ .+ ..+|++++|+|+++. ........++.+.++|+++|+||+|+.
T Consensus 63 v~~~~l~~~~aDvvI~VvDat~l--er~l~l~~ql~~~~~PiIIVlNK~Dl~ 112 (591)
T TIGR00437 63 VARDYLLNEKPDLVVNVVDASNL--ERNLYLTLQLLELGIPMILALNLVDEA 112 (591)
T ss_pred HHHHHHhhcCCCEEEEEecCCcc--hhhHHHHHHHHhcCCCEEEEEehhHHH
Confidence 122 22 367999999999873 233445556677899999999999974
No 227
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.57 E-value=5.1e-14 Score=135.73 Aligned_cols=113 Identities=16% Similarity=0.199 Sum_probs=75.4
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchHH
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (608)
+|+++|..|+|||||+++|+... ... .+ ....|.+.......+......+.+|||||+.+|...
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~--~~~-----------~~---~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~ 65 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDE--FSE-----------ST---KSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSL 65 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCC-----------CC---CCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhh
Confidence 68999999999999999996211 100 00 001122222222222223457889999999999988
Q ss_pred HHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHHHh---cCCCEEEEEeCCCcC
Q 007325 172 VERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRL 220 (608)
Q Consensus 172 ~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~~~---~~~p~ivviNK~D~~ 220 (608)
....++.+|++|+|+|.++.-.......| ..+.. .++|+++|+||+|+.
T Consensus 66 ~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~ 118 (188)
T cd04125 66 NNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLV 118 (188)
T ss_pred HHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCc
Confidence 99999999999999999875433333223 22222 357899999999975
No 228
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.57 E-value=3.9e-14 Score=134.23 Aligned_cols=116 Identities=12% Similarity=-0.011 Sum_probs=76.1
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCCCCC
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHV 166 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~ 166 (608)
+..+|+++|.+|+|||||+++++. +... ... +.+ .-+.... ...+.+++ ..+++|||+|..
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~--~~f~-~~~---------~~~---T~~~~~~--~~~~~~~~~~~~l~~~d~~g~~ 65 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLG--RSFS-LNA---------YSP---TIKPRYA--VNTVEVYGQEKYLILREVGEDE 65 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhC--CCCC-ccc---------CCC---ccCcceE--EEEEEECCeEEEEEEEecCCcc
Confidence 467899999999999999999972 2111 000 000 0011111 11233333 568899999999
Q ss_pred CchHHHHHHHHhcCeEEEEEcCCCCCchhHH-HHHHHHH-hcCCCEEEEEeCCCcCC
Q 007325 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQAD-KYGVPRICFVNKMDRLG 221 (608)
Q Consensus 167 df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~-~~~~~~~-~~~~p~ivviNK~D~~~ 221 (608)
.|......+++.+|++|+|+|+++....... ..++.+. ..++|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~ 122 (169)
T cd01892 66 VAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDE 122 (169)
T ss_pred cccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccc
Confidence 9888788888999999999999875322222 2233331 23799999999999853
No 229
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.57 E-value=5.4e-14 Score=136.07 Aligned_cols=111 Identities=15% Similarity=0.075 Sum_probs=76.7
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecE---EEEeecCeeEEEEeCCCCCC
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAA---TTTYWNKHRINIIDTPGHVD 167 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~---~~~~~~~~~i~liDTPG~~d 167 (608)
.+|+++|..++|||||+.++++.. ... .+. .|+.... ..+.-....+++|||||+.+
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~--f~~-----------~~~-------~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~ 63 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNA--FPK-----------EYI-------PTVFDNYSAQTAVDGRTVSLNLWDTAGQEE 63 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC--CCc-----------CCC-------CceEeeeEEEEEECCEEEEEEEEECCCchh
Confidence 479999999999999999997321 110 000 0221111 11222336789999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCCCchhHHH-HHHH-HH--hcCCCEEEEEeCCCcCC
Q 007325 168 FTLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQ-AD--KYGVPRICFVNKMDRLG 221 (608)
Q Consensus 168 f~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~-~~~~-~~--~~~~p~ivviNK~D~~~ 221 (608)
|......+++.+|++|+|+|.++........ .|.. +. ..++|+++|.||.|+..
T Consensus 64 ~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~ 121 (191)
T cd01875 64 YDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRN 121 (191)
T ss_pred hhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhc
Confidence 9988888999999999999998754444432 3432 22 24789999999999854
No 230
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.56 E-value=5.8e-14 Score=134.83 Aligned_cols=111 Identities=21% Similarity=0.261 Sum_probs=73.6
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCCCCCCch
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFT 169 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~df~ 169 (608)
+|+++|..|+|||||+.+++...- .. ++.+ .-|..... ..+..++ ..+.+|||+|+.+|.
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f--~~-----------~~~~---T~g~~~~~--~~i~~~~~~~~l~iwDt~G~~~~~ 63 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEF--DE-----------DYIQ---TLGVNFME--KTISIRGTEITFSIWDLGGQREFI 63 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--CC-----------CCCC---ccceEEEE--EEEEECCEEEEEEEEeCCCchhHH
Confidence 689999999999999999973211 00 0000 01111211 2233333 678999999999999
Q ss_pred HHHHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHHHh---cCCCEEEEEeCCCcCC
Q 007325 170 LEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 221 (608)
Q Consensus 170 ~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~~~---~~~p~ivviNK~D~~~ 221 (608)
.....+++.+|++++|+|.++.........| ..+.. ...| ++|+||+|+..
T Consensus 64 ~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~ 118 (182)
T cd04128 64 NMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFA 118 (182)
T ss_pred HhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccc
Confidence 8888899999999999999875443333233 33332 2455 68899999853
No 231
>PLN03108 Rab family protein; Provisional
Probab=99.56 E-value=1.1e-13 Score=136.07 Aligned_cols=116 Identities=16% Similarity=0.122 Sum_probs=77.0
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCch
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~ 169 (608)
..+|+|+|.+|+|||||+++|+.... ... +. ...+.+.......+.-....+.+|||||+.+|.
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~--~~~-----------~~---~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~ 69 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRF--QPV-----------HD---LTIGVEFGARMITIDNKPIKLQIWDTAGQESFR 69 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC--CCC-----------CC---CCccceEEEEEEEECCEEEEEEEEeCCCcHHHH
Confidence 46899999999999999999963211 000 00 001112222222222223568899999999998
Q ss_pred HHHHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHHHh---cCCCEEEEEeCCCcCC
Q 007325 170 LEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 221 (608)
Q Consensus 170 ~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~~~---~~~p~ivviNK~D~~~ 221 (608)
......++.+|++|+|+|+++....+....| ..+.. .++|+++|.||+|+..
T Consensus 70 ~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~ 125 (210)
T PLN03108 70 SITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 125 (210)
T ss_pred HHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc
Confidence 8888899999999999999875443333233 22222 3689999999999753
No 232
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.56 E-value=6e-14 Score=133.09 Aligned_cols=110 Identities=14% Similarity=0.107 Sum_probs=72.6
Q ss_pred EEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeec--CeeEEEEeCCCCCCchH
Q 007325 93 IGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGHVDFTL 170 (608)
Q Consensus 93 i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG~~df~~ 170 (608)
|+|+|.+|+|||||+++++.... .. .+.+ . ........+..+ ...+.+|||||+.+|..
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~--~~-----------~~~~-----~-~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 61 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAF--PE-----------DYVP-----T-VFENYSADVEVDGKPVELGLWDTAGQEDYDR 61 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCC--CC-----------CCCC-----c-EEeeeeEEEEECCEEEEEEEEECCCCcccch
Confidence 58999999999999999973211 00 0000 0 001111122223 34689999999999988
Q ss_pred HHHHHHHhcCeEEEEEcCCCCCchhHH-HHH-HHHHh--cCCCEEEEEeCCCcCC
Q 007325 171 EVERALRVLDGAICLFDSVAGVEPQSE-TVW-RQADK--YGVPRICFVNKMDRLG 221 (608)
Q Consensus 171 ~~~~~l~~~D~~i~VvDa~~g~~~~t~-~~~-~~~~~--~~~p~ivviNK~D~~~ 221 (608)
.....++.+|++|+|+|.++.-..+.. ..| ..+.. .++|+++|+||+|+..
T Consensus 62 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 116 (174)
T smart00174 62 LRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLRE 116 (174)
T ss_pred hchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhh
Confidence 778888999999999999864333322 122 33332 3799999999999864
No 233
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.56 E-value=1.1e-13 Score=131.91 Aligned_cols=114 Identities=18% Similarity=0.124 Sum_probs=75.1
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchH
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~ 170 (608)
.+|+++|..|+|||||+.+++... .. .... .+..+ .. .....+......+++|||||+.+|..
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~--f~--~~~~--~t~~~----------~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~ 64 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNA--FP--GEYI--PTVFD----------NY-SANVMVDGKPVNLGLWDTAGQEDYDR 64 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC--CC--CcCC--Cccee----------ee-EEEEEECCEEEEEEEEECCCchhhhh
Confidence 378999999999999999997321 10 0000 00000 00 00111222336788999999999988
Q ss_pred HHHHHHHhcCeEEEEEcCCCCCchhHH-HHH-HHHHh--cCCCEEEEEeCCCcCC
Q 007325 171 EVERALRVLDGAICLFDSVAGVEPQSE-TVW-RQADK--YGVPRICFVNKMDRLG 221 (608)
Q Consensus 171 ~~~~~l~~~D~~i~VvDa~~g~~~~t~-~~~-~~~~~--~~~p~ivviNK~D~~~ 221 (608)
....+++.+|++|+|+|.++.-..+.. ..| ..+.. .++|+++|.||+|+..
T Consensus 65 ~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~ 119 (174)
T cd01871 65 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 119 (174)
T ss_pred hhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhcc
Confidence 888889999999999999975444433 233 22222 3689999999999854
No 234
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.56 E-value=7.7e-14 Score=137.20 Aligned_cols=113 Identities=14% Similarity=0.115 Sum_probs=74.3
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEee---cCeeEEEEeCCCCCC
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW---NKHRINIIDTPGHVD 167 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~---~~~~i~liDTPG~~d 167 (608)
.+|+++|.+|+|||||+++|+... ..... .+.+..+.....+.+ ....+++|||||+..
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~--~~~~~----------------~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~ 64 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGR--FAEVS----------------DPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQER 64 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC--CCCCC----------------CceeceEEEEEEEEECCCCEEEEEEEeCCcchh
Confidence 589999999999999999997321 11000 011111221222222 135789999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHHHh----cCCCEEEEEeCCCcCC
Q 007325 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK----YGVPRICFVNKMDRLG 221 (608)
Q Consensus 168 f~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~~~----~~~p~ivviNK~D~~~ 221 (608)
|.......++.+|++|+|+|.++.........| ..+.. ...|+++|.||+|+..
T Consensus 65 ~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~ 123 (211)
T cd04111 65 FRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLES 123 (211)
T ss_pred HHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccccc
Confidence 988888899999999999999874332222222 22222 3467788999999753
No 235
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.56 E-value=1.7e-13 Score=128.62 Aligned_cols=112 Identities=21% Similarity=0.215 Sum_probs=74.7
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCCCCCCch
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFT 169 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~df~ 169 (608)
+|+++|.+|+|||||+++++. +..... ....+..+.....+..++ ..+.+|||||..+|.
T Consensus 2 ki~vvG~~~~GKTsli~~~~~--~~~~~~----------------~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~ 63 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTD--NEFHSS----------------HISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQ 63 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhc--CCCCCC----------------CCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHH
Confidence 689999999999999999962 211100 001111112222333333 578899999999998
Q ss_pred HHHHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHHHh---cCCCEEEEEeCCCcCC
Q 007325 170 LEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 221 (608)
Q Consensus 170 ~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~~~---~~~p~ivviNK~D~~~ 221 (608)
.....+++.+|++++|+|.++.-.......| ..+.. .++|+++|.||+|+..
T Consensus 64 ~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~ 119 (161)
T cd04117 64 TITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQ 119 (161)
T ss_pred hhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 8888899999999999999864333222222 22222 3689999999999753
No 236
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.55 E-value=6e-14 Score=133.23 Aligned_cols=111 Identities=16% Similarity=0.111 Sum_probs=72.7
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeec-EEEEeec--CeeEEEEeCCCCCC
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSA-ATTTYWN--KHRINIIDTPGHVD 167 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~-~~~~~~~--~~~i~liDTPG~~d 167 (608)
++|+++|.+|+|||||+++++..... . .+.+ |+... ...+.++ ...+.+|||||+.+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~--~-----------~~~~-------t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 61 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFP--E-----------VYVP-------TVFENYVADIEVDGKQVELALWDTAGQED 61 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC--C-----------CCCC-------ccccceEEEEEECCEEEEEEEEeCCCchh
Confidence 58999999999999999999732110 0 0000 11110 1122333 35689999999998
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCCCchhHH-HHH-HHHHh--cCCCEEEEEeCCCcCC
Q 007325 168 FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVW-RQADK--YGVPRICFVNKMDRLG 221 (608)
Q Consensus 168 f~~~~~~~l~~~D~~i~VvDa~~g~~~~t~-~~~-~~~~~--~~~p~ivviNK~D~~~ 221 (608)
+.......++.+|++++|+|..+....... ..| ..+.. .++|+++|+||+|+..
T Consensus 62 ~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 119 (175)
T cd01870 62 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 119 (175)
T ss_pred hhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhccc
Confidence 877666778899999999998853222221 222 22222 4789999999999864
No 237
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=2e-13 Score=126.54 Aligned_cols=118 Identities=17% Similarity=0.122 Sum_probs=84.7
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCc
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 168 (608)
+.-+|+++|..++|||||+++++|.......... -|+..-+....+.-...++.||||+|+++|
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqAT----------------IGiDFlskt~~l~d~~vrLQlWDTAGQERF 84 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQAT----------------IGIDFLSKTMYLEDRTVRLQLWDTAGQERF 84 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcccccce----------------eeeEEEEEEEEEcCcEEEEEEEecccHHHH
Confidence 4468999999999999999999976553222111 133333333334335578999999999999
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCCCch-hHHHHHHHHHhcC----CCEEEEEeCCCcCCC
Q 007325 169 TLEVERALRVLDGAICLFDSVAGVEP-QSETVWRQADKYG----VPRICFVNKMDRLGA 222 (608)
Q Consensus 169 ~~~~~~~l~~~D~~i~VvDa~~g~~~-~t~~~~~~~~~~~----~p~ivviNK~D~~~~ 222 (608)
......++|.+++||+|.|.++.-.. ++...++.+...+ +-+++|.||.|+.+.
T Consensus 85 rslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dk 143 (221)
T KOG0094|consen 85 RSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDK 143 (221)
T ss_pred hhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccch
Confidence 99999999999999999999975443 3444445554432 345677899999764
No 238
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.55 E-value=1.5e-13 Score=128.59 Aligned_cols=110 Identities=20% Similarity=0.247 Sum_probs=74.7
Q ss_pred EEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCc----
Q 007325 93 IGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF---- 168 (608)
Q Consensus 93 i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df---- 168 (608)
|+++|++|+|||||++.|+..... .. .+...+.|..... +.++ ..+.+|||||+.+.
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~-~~---------------~~~~~~~t~~~~~--~~~~-~~~~~~D~~g~~~~~~~~ 62 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKL-AR---------------TSKTPGKTQLINF--FNVN-DKFRLVDLPGYGYAKVSK 62 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCce-ee---------------ecCCCCcceeEEE--EEcc-CeEEEecCCCccccccCH
Confidence 799999999999999999621111 00 0111223333222 2222 38999999998653
Q ss_pred ------hHHHHHHHH---hcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCC
Q 007325 169 ------TLEVERALR---VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (608)
Q Consensus 169 ------~~~~~~~l~---~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~ 221 (608)
...+..++. .++++++|+|...........+++.+...+.|+++++||+|+..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~ 124 (170)
T cd01876 63 EVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLK 124 (170)
T ss_pred HHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCC
Confidence 222333333 35788999999887777777788888888999999999999853
No 239
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.54 E-value=3.5e-14 Score=128.42 Aligned_cols=97 Identities=23% Similarity=0.138 Sum_probs=67.9
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCC----CC
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG----HV 166 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG----~~ 166 (608)
++|.+||.+++|||||+++|........ -|.. +. +.=++||||| +.
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~~----------------------KTq~-----i~---~~~~~IDTPGEyiE~~ 51 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRYK----------------------KTQA-----IE---YYDNTIDTPGEYIENP 51 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCcC----------------------ccce-----eE---ecccEEECChhheeCH
Confidence 5799999999999999999952111000 0211 11 2225799999 34
Q ss_pred CchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcC
Q 007325 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (608)
Q Consensus 167 df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~ 220 (608)
.|...+......+|.+++|.|+++....-- -..+...+.|+|-|+||+|+.
T Consensus 52 ~~y~aLi~ta~dad~V~ll~dat~~~~~~p---P~fa~~f~~pvIGVITK~Dl~ 102 (143)
T PF10662_consen 52 RFYHALIVTAQDADVVLLLQDATEPRSVFP---PGFASMFNKPVIGVITKIDLP 102 (143)
T ss_pred HHHHHHHHHHhhCCEEEEEecCCCCCccCC---chhhcccCCCEEEEEECccCc
Confidence 466677777788999999999997533211 234455789999999999998
No 240
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.54 E-value=1.1e-13 Score=132.01 Aligned_cols=114 Identities=16% Similarity=0.116 Sum_probs=76.9
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchH
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~ 170 (608)
.+|+++|..++|||+|+.+++. +.... ++.+ .-|.+.. ....+.-....+++|||+|+.+|..
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~--~~f~~-----------~~~~---Ti~~~~~-~~~~~~~~~v~l~i~Dt~G~~~~~~ 64 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTS--NKFPT-----------DYIP---TVFDNFS-ANVSVDGNTVNLGLWDTAGQEDYNR 64 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhc--CCCCC-----------CCCC---cceeeeE-EEEEECCEEEEEEEEECCCCccccc
Confidence 3699999999999999999972 21110 0100 0011111 0111111236789999999999999
Q ss_pred HHHHHHHhcCeEEEEEcCCCCCchhHH-HHH-HHHHh--cCCCEEEEEeCCCcCC
Q 007325 171 EVERALRVLDGAICLFDSVAGVEPQSE-TVW-RQADK--YGVPRICFVNKMDRLG 221 (608)
Q Consensus 171 ~~~~~l~~~D~~i~VvDa~~g~~~~t~-~~~-~~~~~--~~~p~ivviNK~D~~~ 221 (608)
....+++.+|++|+|+|.++....+.. ..| ..+.. .++|+++|.||+|+..
T Consensus 65 ~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~ 119 (176)
T cd04133 65 LRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRD 119 (176)
T ss_pred cchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhcc
Confidence 888899999999999999875554443 223 33332 4789999999999854
No 241
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=7e-14 Score=129.68 Aligned_cols=111 Identities=21% Similarity=0.234 Sum_probs=78.6
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEee----cCeeEEEEeCCCCC
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW----NKHRINIIDTPGHV 166 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~----~~~~i~liDTPG~~ 166 (608)
-+|+++|..++|||||+-++. .+..... .|. ||..+..+-.+ ...++.+|||.|++
T Consensus 6 ~KvvLLG~~~VGKSSlV~Rfv--k~~F~e~--------------~e~----TIGaaF~tktv~~~~~~ikfeIWDTAGQE 65 (200)
T KOG0092|consen 6 FKVVLLGDSGVGKSSLVLRFV--KDQFHEN--------------IEP----TIGAAFLTKTVTVDDNTIKFEIWDTAGQE 65 (200)
T ss_pred EEEEEECCCCCCchhhhhhhh--hCccccc--------------ccc----ccccEEEEEEEEeCCcEEEEEEEEcCCcc
Confidence 579999999999999999997 2221111 111 33333333322 34788899999999
Q ss_pred CchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHHHhcCCC---EEEEEeCCCcCC
Q 007325 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADKYGVP---RICFVNKMDRLG 221 (608)
Q Consensus 167 df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~~~~~~p---~ivviNK~D~~~ 221 (608)
+|.+....++|.+++||+|.|.++.-..+....| +.+.+..-| +.+|.||+|+..
T Consensus 66 Ry~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~ 124 (200)
T KOG0092|consen 66 RYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLE 124 (200)
T ss_pred cccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhh
Confidence 9999999999999999999999986555555555 333333223 345789999865
No 242
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.54 E-value=1.3e-13 Score=131.04 Aligned_cols=111 Identities=15% Similarity=0.082 Sum_probs=74.3
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeec--CeeEEEEeCCCCCCch
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGHVDFT 169 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG~~df~ 169 (608)
+++++|.+|+|||||+.+++... .. . ++.+ +..+.-...+..+ ...+.+|||||+.+|.
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~--~~--~---------~~~~------t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 62 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNG--YP--T---------EYVP------TAFDNFSVVVLVDGKPVRLQLCDTAGQDEFD 62 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CC--C---------CCCC------ceeeeeeEEEEECCEEEEEEEEECCCChhhc
Confidence 58999999999999999996321 10 0 0000 0111111122223 3578899999999988
Q ss_pred HHHHHHHHhcCeEEEEEcCCCCCchhH--HHHHHHHHh--cCCCEEEEEeCCCcCC
Q 007325 170 LEVERALRVLDGAICLFDSVAGVEPQS--ETVWRQADK--YGVPRICFVNKMDRLG 221 (608)
Q Consensus 170 ~~~~~~l~~~D~~i~VvDa~~g~~~~t--~~~~~~~~~--~~~p~ivviNK~D~~~ 221 (608)
.....+++.+|++|+|+|.++.-..+. ...+..+.. .++|+++++||+|+..
T Consensus 63 ~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 118 (173)
T cd04130 63 KLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRT 118 (173)
T ss_pred cccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhcc
Confidence 777778899999999999997543332 223333433 4689999999999854
No 243
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=1.4e-13 Score=128.17 Aligned_cols=117 Identities=20% Similarity=0.203 Sum_probs=86.1
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCCCC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGH 165 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~ 165 (608)
+..-+|.++|.+|+|||.|+.++. .+ ...++...-|-++....++..++ .++++|||.|+
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~--~~----------------~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQ 68 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFK--DD----------------TFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQ 68 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhc--cC----------------CcchhhcceeeeEEEEEEeeecceEEEEEeeecccc
Confidence 446789999999999999999994 11 11122222334444455555544 57999999999
Q ss_pred CCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHH-HHHh---cCCCEEEEEeCCCcCCC
Q 007325 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWR-QADK---YGVPRICFVNKMDRLGA 222 (608)
Q Consensus 166 ~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~-~~~~---~~~p~ivviNK~D~~~~ 222 (608)
.+|...+..++|.++++|+|.|.++.-.......|- .+.+ .++|.++|.||+|+...
T Consensus 69 ERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~ 129 (205)
T KOG0084|consen 69 ERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEK 129 (205)
T ss_pred HHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhh
Confidence 999999999999999999999999755555555543 3333 46899999999998654
No 244
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.52 E-value=1.1e-13 Score=126.09 Aligned_cols=108 Identities=23% Similarity=0.212 Sum_probs=76.6
Q ss_pred EEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEee----cCeeEEEEeCCCCCCchH
Q 007325 95 IMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW----NKHRINIIDTPGHVDFTL 170 (608)
Q Consensus 95 ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~----~~~~i~liDTPG~~df~~ 170 (608)
++|++|+|||||+++|........ ....|. ........ .+..+.+|||||+.++..
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~-------------------~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~ 60 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPE-------------------EYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRS 60 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCc-------------------ccccch-hheeeEEEEECCEEEEEEEEecCChHHHHh
Confidence 589999999999999973222100 001121 22222222 367899999999999888
Q ss_pred HHHHHHHhcCeEEEEEcCCCCCchhHHHHH-----HHHHhcCCCEEEEEeCCCcCCC
Q 007325 171 EVERALRVLDGAICLFDSVAGVEPQSETVW-----RQADKYGVPRICFVNKMDRLGA 222 (608)
Q Consensus 171 ~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-----~~~~~~~~p~ivviNK~D~~~~ 222 (608)
.....++.+|++++|+|+.++........| ......++|+++|+||+|+...
T Consensus 61 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~ 117 (157)
T cd00882 61 LRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEE 117 (157)
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccc
Confidence 888889999999999999987655555443 3344568999999999998653
No 245
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.52 E-value=3.2e-13 Score=129.63 Aligned_cols=112 Identities=13% Similarity=0.081 Sum_probs=76.8
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecE-EEEee--cCeeEEEEeCCCCC
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAA-TTTYW--NKHRINIIDTPGHV 166 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~-~~~~~--~~~~i~liDTPG~~ 166 (608)
..+|+++|..++|||||+.+++.... .. ++.+ |+.... ..+.. ....+.||||+|..
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~~~f--~~-----------~~~p-------T~~~~~~~~~~~~~~~~~l~iwDtaG~e 64 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDCF--PE-----------NYVP-------TVFENYTASFEIDTQRIELSLWDTSGSP 64 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCC--CC-----------ccCC-------ceeeeeEEEEEECCEEEEEEEEECCCch
Confidence 35799999999999999999973211 00 0100 111110 11222 33578999999999
Q ss_pred CchHHHHHHHHhcCeEEEEEcCCCCCchhHH-HHHH-HHHh--cCCCEEEEEeCCCcCC
Q 007325 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWR-QADK--YGVPRICFVNKMDRLG 221 (608)
Q Consensus 167 df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~-~~~~-~~~~--~~~p~ivviNK~D~~~ 221 (608)
+|......+++.+|++|+|+|.++....... ..|. .+.. .+.|+++|.||+|+..
T Consensus 65 ~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~ 123 (182)
T cd04172 65 YYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 123 (182)
T ss_pred hhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhc
Confidence 9988888889999999999999876554443 3342 3332 3689999999999843
No 246
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.51 E-value=1.1e-13 Score=122.48 Aligned_cols=107 Identities=20% Similarity=0.236 Sum_probs=79.6
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCc---
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF--- 168 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df--- 168 (608)
.|+++|.+|+|||||+|+|+... ....+. ..+.|.......+.+++..+.++||||..+-
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~--~~~~~~---------------~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~ 63 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKK--LAKVSN---------------IPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQ 63 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTST--SSEESS---------------STTSSSSEEEEEEEETTEEEEEEESSSCSSSSHH
T ss_pred CEEEECCCCCCHHHHHHHHhccc--cccccc---------------cccceeeeeeeeeeeceeeEEEEeCCCCcccchh
Confidence 48999999999999999997211 111111 1344555555666778899999999998652
Q ss_pred ------hHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeC
Q 007325 169 ------TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNK 216 (608)
Q Consensus 169 ------~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK 216 (608)
.....+.+..+|++++|+|+.+........+++++. .+.|+++|+||
T Consensus 64 ~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 64 DNDGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp HHHHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred hHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 223555667889999999988855566777778886 88999999998
No 247
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.51 E-value=3.4e-13 Score=133.62 Aligned_cols=113 Identities=12% Similarity=0.101 Sum_probs=69.7
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchHH
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (608)
+|+++|.+|+|||||+++++ .+.... . .+.+ ..+.........+......+++|||||+.++.
T Consensus 2 KI~lvG~~gvGKTsLi~~~~--~~~~~~-~---------~~~~---t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~-- 64 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFT--SGEYDD-H---------AYDA---SGDDDTYERTVSVDGEESTLVVIDHWEQEMWT-- 64 (221)
T ss_pred EEEEECCCCCcHHHHHHHHh--cCCcCc-c---------CcCC---CccccceEEEEEECCEEEEEEEEeCCCcchHH--
Confidence 68999999999999999996 221110 0 0000 00001111112222245779999999998332
Q ss_pred HHHHHH-hcCeEEEEEcCCCCCchhH-HHHHHHHHh----cCCCEEEEEeCCCcCC
Q 007325 172 VERALR-VLDGAICLFDSVAGVEPQS-ETVWRQADK----YGVPRICFVNKMDRLG 221 (608)
Q Consensus 172 ~~~~l~-~~D~~i~VvDa~~g~~~~t-~~~~~~~~~----~~~p~ivviNK~D~~~ 221 (608)
....++ .+|++++|+|+++...... ...+..+.. .++|+++|.||+|+..
T Consensus 65 ~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~ 120 (221)
T cd04148 65 EDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLAR 120 (221)
T ss_pred HhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccc
Confidence 233556 8999999999997543332 223333333 4689999999999754
No 248
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=7.2e-13 Score=125.28 Aligned_cols=120 Identities=19% Similarity=0.132 Sum_probs=87.4
Q ss_pred CCCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCC
Q 007325 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (608)
Q Consensus 86 ~~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 165 (608)
+....-.|.++|.+|+|||+|+.++...+-....... -||........+.-....+.+|||.|+
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sT----------------iGIDFk~kti~l~g~~i~lQiWDtaGQ 71 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFIST----------------IGIDFKIKTIELDGKKIKLQIWDTAGQ 71 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccce----------------EEEEEEEEEEEeCCeEEEEEEEEcccc
Confidence 4456789999999999999999999744332221111 133333333333334567899999999
Q ss_pred CCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHH-H---hcCCCEEEEEeCCCcCC
Q 007325 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQA-D---KYGVPRICFVNKMDRLG 221 (608)
Q Consensus 166 ~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~-~---~~~~p~ivviNK~D~~~ 221 (608)
..|...+..+++.|+++++|+|.+.........-|... . ..++|.++|.||+|+..
T Consensus 72 erf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~ 131 (207)
T KOG0078|consen 72 ERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEE 131 (207)
T ss_pred hhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccc
Confidence 99999999999999999999999986666555555433 2 24789999999999864
No 249
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.50 E-value=4.2e-13 Score=133.86 Aligned_cols=131 Identities=16% Similarity=0.213 Sum_probs=88.0
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCc---
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF--- 168 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df--- 168 (608)
.|+++|.+|+|||||+++|. +.....+.. .+.|.......+.+++..+++|||||+.+.
T Consensus 2 ~v~lvG~~~~GKStLl~~Lt---g~~~~v~~~---------------~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~ 63 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLT---NTKSEVAAY---------------EFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAAD 63 (233)
T ss_pred EEEEECCCCCCHHHHHHHHH---CCCccccCC---------------CCccccceEEEEEECCeEEEEEECCCccccccc
Confidence 58999999999999999995 322222111 233555666677788999999999998643
Q ss_pred ----hHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCC------CE----------EEEEeCCCcCCCcHHHHH
Q 007325 169 ----TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGV------PR----------ICFVNKMDRLGANFFRTR 228 (608)
Q Consensus 169 ----~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~------p~----------ivviNK~D~~~~~~~~~~ 228 (608)
..++...++.+|++++|+|+++.. .+...+.+.+...++ |. +-+.++.|+.+.+.+ .+
T Consensus 64 ~~~~~~~~l~~~~~ad~il~V~D~t~~~-~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~-~v 141 (233)
T cd01896 64 GKGRGRQVIAVARTADLILMVLDATKPE-GHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEK-TI 141 (233)
T ss_pred chhHHHHHHHhhccCCEEEEEecCCcch-hHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHH-HH
Confidence 345667889999999999998643 244455666655444 21 234457777777644 45
Q ss_pred HHHHHhhCCccEEE
Q 007325 229 DMIVTNLGAKPLVV 242 (608)
Q Consensus 229 ~~i~~~l~~~~~~~ 242 (608)
..+.+.++++...+
T Consensus 142 ~~~l~~~~i~~~~v 155 (233)
T cd01896 142 KAILREYKIHNADV 155 (233)
T ss_pred HHHHHHhCeeeEEE
Confidence 55666677665443
No 250
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.50 E-value=1.2e-13 Score=121.96 Aligned_cols=112 Identities=21% Similarity=0.253 Sum_probs=85.0
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchH
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~ 170 (608)
-.+.++|-.++|||||+|.+. +|...+ | -+-|+......++-++..+.+||.||+..|..
T Consensus 21 mel~lvGLq~sGKtt~Vn~ia--~g~~~e-----------d-------miptvGfnmrk~tkgnvtiklwD~gGq~rfrs 80 (186)
T KOG0075|consen 21 MELSLVGLQNSGKTTLVNVIA--RGQYLE-----------D-------MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS 80 (186)
T ss_pred eeEEEEeeccCCcceEEEEEe--eccchh-----------h-------hcccccceeEEeccCceEEEEEecCCCccHHH
Confidence 368899999999999999884 221110 1 12266666777777888999999999999999
Q ss_pred HHHHHHHhcCeEEEEEcCCCC--CchhHHHHHHHH---HhcCCCEEEEEeCCCcCCC
Q 007325 171 EVERALRVLDGAICLFDSVAG--VEPQSETVWRQA---DKYGVPRICFVNKMDRLGA 222 (608)
Q Consensus 171 ~~~~~l~~~D~~i~VvDa~~g--~~~~t~~~~~~~---~~~~~p~ivviNK~D~~~~ 222 (608)
.++++.|.+|+++++|||.+. +...-.++-..+ .-.++|+++..||.|+.++
T Consensus 81 mWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~A 137 (186)
T KOG0075|consen 81 MWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGA 137 (186)
T ss_pred HHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccc
Confidence 999999999999999999963 222222333333 3468999999999999875
No 251
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.50 E-value=4.4e-13 Score=128.22 Aligned_cols=110 Identities=15% Similarity=0.122 Sum_probs=75.3
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeec-EEEEee--cCeeEEEEeCCCCCCc
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSA-ATTTYW--NKHRINIIDTPGHVDF 168 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~-~~~~~~--~~~~i~liDTPG~~df 168 (608)
+|+++|..++|||||+++++...- .. ++.+ |+... ...+.. ....+.+|||+|+..|
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~~~f--~~-----------~~~~-------t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~ 62 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKDCY--PE-----------TYVP-------TVFENYTASFEIDEQRIELSLWDTSGSPYY 62 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC--CC-----------CcCC-------ceEEEEEEEEEECCEEEEEEEEECCCchhh
Confidence 699999999999999999973211 00 0000 11111 112222 3357889999999999
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCCCchhH-HHHHH-HHHh--cCCCEEEEEeCCCcCC
Q 007325 169 TLEVERALRVLDGAICLFDSVAGVEPQS-ETVWR-QADK--YGVPRICFVNKMDRLG 221 (608)
Q Consensus 169 ~~~~~~~l~~~D~~i~VvDa~~g~~~~t-~~~~~-~~~~--~~~p~ivviNK~D~~~ 221 (608)
......+++.+|++|+|+|.++...... ...|. .+.. .++|+++|.||+|+..
T Consensus 63 ~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~ 119 (178)
T cd04131 63 DNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRT 119 (178)
T ss_pred hhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhc
Confidence 8888888999999999999987554444 23342 3332 3789999999999853
No 252
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.50 E-value=2.4e-13 Score=132.87 Aligned_cols=112 Identities=18% Similarity=0.234 Sum_probs=77.1
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEe----ecCeeEEEEeCCCCC
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY----WNKHRINIIDTPGHV 166 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~----~~~~~i~liDTPG~~ 166 (608)
++|+++|++|+|||||+++|..... .. ++. ++......+. ..+..+.|||||||.
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~--~~--------t~~-----------s~~~~~~~~~~~~~~~~~~~~l~D~pG~~ 59 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKY--RS--------TVT-----------SIEPNVATFILNSEGKGKKFRLVDVPGHP 59 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC--CC--------ccC-----------cEeecceEEEeecCCCCceEEEEECCCCH
Confidence 5799999999999999999963211 00 000 1111111111 246789999999999
Q ss_pred CchHHHHHHHHhc-CeEEEEEcCCCCCc--hhHHHHHHH----HH--hcCCCEEEEEeCCCcCCCc
Q 007325 167 DFTLEVERALRVL-DGAICLFDSVAGVE--PQSETVWRQ----AD--KYGVPRICFVNKMDRLGAN 223 (608)
Q Consensus 167 df~~~~~~~l~~~-D~~i~VvDa~~g~~--~~t~~~~~~----~~--~~~~p~ivviNK~D~~~~~ 223 (608)
+|.......++.+ +++|+|+|+..... ..+.+.|.. .. ..++|+++|+||+|+..+.
T Consensus 60 ~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~ 125 (203)
T cd04105 60 KLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAK 125 (203)
T ss_pred HHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccC
Confidence 9999999999998 99999999997531 112222221 11 2489999999999997654
No 253
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.49 E-value=7.8e-13 Score=131.36 Aligned_cols=114 Identities=13% Similarity=0.054 Sum_probs=76.4
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCch
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~ 169 (608)
...|+++|..++|||+|+.+++.... .. ++.+. -+..... ...+.-....+.||||+|..+|.
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~F--~~-----------~y~pT---i~~~~~~-~i~~~~~~v~l~iwDTaG~e~~~ 75 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCY--PE-----------TYVPT---VFENYTA-GLETEEQRVELSLWDTSGSPYYD 75 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCCC--CC-----------CcCCc---eeeeeEE-EEEECCEEEEEEEEeCCCchhhH
Confidence 35899999999999999999973211 10 00000 0001100 11122234678999999999998
Q ss_pred HHHHHHHHhcCeEEEEEcCCCCCchhH-HHHH-HHHHh--cCCCEEEEEeCCCcC
Q 007325 170 LEVERALRVLDGAICLFDSVAGVEPQS-ETVW-RQADK--YGVPRICFVNKMDRL 220 (608)
Q Consensus 170 ~~~~~~l~~~D~~i~VvDa~~g~~~~t-~~~~-~~~~~--~~~p~ivviNK~D~~ 220 (608)
.....+++.+|++|+|+|.++...... ...| ..+.. .+.|+++|.||+|+.
T Consensus 76 ~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~ 130 (232)
T cd04174 76 NVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLR 130 (232)
T ss_pred HHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 888889999999999999997655443 2334 33332 368999999999975
No 254
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.49 E-value=5.9e-13 Score=119.99 Aligned_cols=112 Identities=23% Similarity=0.284 Sum_probs=85.6
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCch
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~ 169 (608)
--.|.|+|..||||||++++|+ +.. ...+. -|......++.++++++++||..|+..+.
T Consensus 16 E~riLiLGLdNsGKTti~~kl~---~~~--~~~i~----------------pt~gf~Iktl~~~~~~L~iwDvGGq~~lr 74 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLL---GED--TDTIS----------------PTLGFQIKTLEYKGYTLNIWDVGGQKTLR 74 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhc---CCC--ccccC----------------CccceeeEEEEecceEEEEEEcCCcchhH
Confidence 4578999999999999999996 211 01111 15666667788899999999999999999
Q ss_pred HHHHHHHHhcCeEEEEEcCCCCCc-hhHHHHHHHH----HhcCCCEEEEEeCCCcCCC
Q 007325 170 LEVERALRVLDGAICLFDSVAGVE-PQSETVWRQA----DKYGVPRICFVNKMDRLGA 222 (608)
Q Consensus 170 ~~~~~~l~~~D~~i~VvDa~~g~~-~~t~~~~~~~----~~~~~p~ivviNK~D~~~~ 222 (608)
.-+..++..+|+.|+|||+++... ..+...+..+ +..+.|++++.||.|+.++
T Consensus 75 ~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~ 132 (185)
T KOG0073|consen 75 SYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGA 132 (185)
T ss_pred HHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccc
Confidence 999999999999999999986432 2233333322 3457899999999998753
No 255
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.49 E-value=2.3e-13 Score=137.02 Aligned_cols=137 Identities=20% Similarity=0.228 Sum_probs=96.9
Q ss_pred cccchhHHHHhhhhhhccCCCCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeec
Q 007325 67 SRRQFSVFAMAAEESKRVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSA 146 (608)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~ 146 (608)
..++++..+...++..-..+.+-+-.|++||.||+|||||++++ +.+..+++.+. =+|+.++
T Consensus 136 rAP~~a~~G~~Ge~r~v~LELKllADVGLVG~PNaGKSTlls~v---S~AkPKIadYp---------------FTTL~Pn 197 (369)
T COG0536 136 RAPRFATPGEPGEERDLRLELKLLADVGLVGLPNAGKSTLLSAV---SAAKPKIADYP---------------FTTLVPN 197 (369)
T ss_pred CCcccCCCCCCCceEEEEEEEeeecccccccCCCCcHHHHHHHH---hhcCCcccCCc---------------cccccCc
Confidence 33455555555554444566777889999999999999999999 34444444432 1367666
Q ss_pred EEEEee-cCeeEEEEeCCCCCC-------chHHHHHHHHhcCeEEEEEcCCCCC----chhHHHHHHHHHh-----cCCC
Q 007325 147 ATTTYW-NKHRINIIDTPGHVD-------FTLEVERALRVLDGAICLFDSVAGV----EPQSETVWRQADK-----YGVP 209 (608)
Q Consensus 147 ~~~~~~-~~~~i~liDTPG~~d-------f~~~~~~~l~~~D~~i~VvDa~~g~----~~~t~~~~~~~~~-----~~~p 209 (608)
...+.. .+..+.+-|.||.++ ......+.+..+.+.++|||.+..- ......++..+.+ .+.|
T Consensus 198 LGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~ 277 (369)
T COG0536 198 LGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKP 277 (369)
T ss_pred ccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCc
Confidence 666664 556799999999876 4556777888889999999998432 2333445555554 4789
Q ss_pred EEEEEeCCCcCC
Q 007325 210 RICFVNKMDRLG 221 (608)
Q Consensus 210 ~ivviNK~D~~~ 221 (608)
.++|+||||.+.
T Consensus 278 ~ivv~NKiD~~~ 289 (369)
T COG0536 278 RIVVLNKIDLPL 289 (369)
T ss_pred eEEEEeccCCCc
Confidence 999999999654
No 256
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.47 E-value=1.8e-12 Score=121.44 Aligned_cols=104 Identities=18% Similarity=0.190 Sum_probs=68.3
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCCCCCCch
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFT 169 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~df~ 169 (608)
+|+++|..|+|||||+.+++. +.... . +.+ +.......+..++ ..+.+|||+|..+
T Consensus 2 ki~vvG~~gvGKTsli~~~~~--~~f~~--~---------~~~-------~~~~~~~~i~~~~~~~~l~i~D~~g~~~-- 59 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLT--GSYVQ--L---------ESP-------EGGRFKKEVLVDGQSHLLLIRDEGGAPD-- 59 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHh--CCCCC--C---------CCC-------CccceEEEEEECCEEEEEEEEECCCCCc--
Confidence 689999999999999999972 21110 0 000 0000012233344 5689999999975
Q ss_pred HHHHHHHHhcCeEEEEEcCCCCCchhHH-HHHHHHHh----cCCCEEEEEeCCCcC
Q 007325 170 LEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK----YGVPRICFVNKMDRL 220 (608)
Q Consensus 170 ~~~~~~l~~~D~~i~VvDa~~g~~~~t~-~~~~~~~~----~~~p~ivviNK~D~~ 220 (608)
...++.+|++++|+|.++.-..+.. ..+..+.. .++|+++|.||+|+.
T Consensus 60 ---~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~ 112 (158)
T cd04103 60 ---AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAIS 112 (158)
T ss_pred ---hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhh
Confidence 2456789999999999976555553 33333432 357999999999973
No 257
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.45 E-value=2.5e-12 Score=126.75 Aligned_cols=115 Identities=21% Similarity=0.163 Sum_probs=77.5
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCch
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~ 169 (608)
..+|+++|++|+|||||+++++. +....... ...|..+.........+...+++|||||+.+|.
T Consensus 9 ~~kv~liG~~g~GKTtLi~~~~~--~~~~~~~~--------------~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~ 72 (215)
T PTZ00132 9 EFKLILVGDGGVGKTTFVKRHLT--GEFEKKYI--------------PTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFG 72 (215)
T ss_pred CceEEEECCCCCCHHHHHHHHHh--CCCCCCCC--------------CccceEEEEEEEEECCeEEEEEEEECCCchhhh
Confidence 35899999999999999998762 22111000 001112222222222345789999999999998
Q ss_pred HHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHH-HH--hcCCCEEEEEeCCCcC
Q 007325 170 LEVERALRVLDGAICLFDSVAGVEPQSETVWRQ-AD--KYGVPRICFVNKMDRL 220 (608)
Q Consensus 170 ~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~-~~--~~~~p~ivviNK~D~~ 220 (608)
......++.+|++|+|+|.++.........|.. +. ..++|++++.||+|+.
T Consensus 73 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~ 126 (215)
T PTZ00132 73 GLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVK 126 (215)
T ss_pred hhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCc
Confidence 888888889999999999997655544443322 11 2478999999999975
No 258
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.45 E-value=1.7e-12 Score=128.22 Aligned_cols=111 Identities=16% Similarity=0.124 Sum_probs=76.0
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecE-EEEee--cCeeEEEEeCCCCCC
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAA-TTTYW--NKHRINIIDTPGHVD 167 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~-~~~~~--~~~~i~liDTPG~~d 167 (608)
.+|+++|..|+|||||+.+++.... . . ++.+ |+.... ..+.. ....+.||||+|+..
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f--~--~---------~y~p-------Ti~~~~~~~~~~~~~~v~L~iwDt~G~e~ 61 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAY--P--G---------SYVP-------TVFENYTASFEIDKRRIELNMWDTSGSSY 61 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--C--C---------ccCC-------ccccceEEEEEECCEEEEEEEEeCCCcHH
Confidence 4789999999999999999973211 0 0 1111 111111 12222 335788999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCCCchhHH-HHHHHH-H--hcCCCEEEEEeCCCcCC
Q 007325 168 FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQA-D--KYGVPRICFVNKMDRLG 221 (608)
Q Consensus 168 f~~~~~~~l~~~D~~i~VvDa~~g~~~~t~-~~~~~~-~--~~~~p~ivviNK~D~~~ 221 (608)
|......+++.+|++|+|+|.++.-..... ..|... . ..++|+++|.||+|+..
T Consensus 62 ~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~ 119 (222)
T cd04173 62 YDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRT 119 (222)
T ss_pred HHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECccccc
Confidence 988888899999999999999975443333 334322 2 24689999999999854
No 259
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.45 E-value=1.7e-12 Score=126.17 Aligned_cols=114 Identities=21% Similarity=0.280 Sum_probs=82.8
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCch-
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT- 169 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~- 169 (608)
++|+++|.+|+|||||+|+|+....... .....+.|.........+++.++++|||||+.++.
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~----------------~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~ 64 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFES----------------KLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSV 64 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCcccc----------------ccCCCCcccccceeeEEECCeEEEEEECcCCCCccC
Confidence 4899999999999999999973322110 01124567777777788899999999999988752
Q ss_pred ------HHHHHHH----HhcCeEEEEEcCCCCCchhHHHHHHHHHhc-C----CCEEEEEeCCCcCC
Q 007325 170 ------LEVERAL----RVLDGAICLFDSVAGVEPQSETVWRQADKY-G----VPRICFVNKMDRLG 221 (608)
Q Consensus 170 ------~~~~~~l----~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~-~----~p~ivviNK~D~~~ 221 (608)
.++.+.+ ...|++|+|+|+.. ........++.+.+. + .++++++|+.|...
T Consensus 65 ~~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~ 130 (196)
T cd01852 65 SPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLE 130 (196)
T ss_pred ChHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccC
Confidence 2222222 34689999999987 777777777776553 2 57889999999754
No 260
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.44 E-value=1.8e-12 Score=127.30 Aligned_cols=116 Identities=20% Similarity=0.222 Sum_probs=83.0
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCC-
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD- 167 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d- 167 (608)
..-||.|+|.+|+|||||+|+|. .|.......+..++. -.......+++..++||||||..|
T Consensus 38 ~pvnvLi~G~TG~GKSSliNALF--~~~~~~v~~vg~~t~---------------~~~~~~~~~~~~~l~lwDtPG~gdg 100 (296)
T COG3596 38 EPVNVLLMGATGAGKSSLINALF--QGEVKEVSKVGVGTD---------------ITTRLRLSYDGENLVLWDTPGLGDG 100 (296)
T ss_pred CceeEEEecCCCCcHHHHHHHHH--hccCceeeecccCCC---------------chhhHHhhccccceEEecCCCcccc
Confidence 34588899999999999999997 222222222211110 001111233567899999999988
Q ss_pred ------chHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHh--cCCCEEEEEeCCCcCC
Q 007325 168 ------FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK--YGVPRICFVNKMDRLG 221 (608)
Q Consensus 168 ------f~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~--~~~p~ivviNK~D~~~ 221 (608)
+.......+...|.+++++|+.+.....+++.|+.+.. .+.|.++++|.+|+..
T Consensus 101 ~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~ 162 (296)
T COG3596 101 KDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAE 162 (296)
T ss_pred hhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhc
Confidence 55557778889999999999998888888888887654 3479999999999753
No 261
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.42 E-value=3.8e-12 Score=122.65 Aligned_cols=111 Identities=19% Similarity=0.170 Sum_probs=70.4
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeec-EEEEeecC--eeEEEEeCCCCCC
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSA-ATTTYWNK--HRINIIDTPGHVD 167 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~-~~~~~~~~--~~i~liDTPG~~d 167 (608)
.+|+++|..|+|||||++++.. +.... ... . |+... ...+.+++ ..+++|||||+.+
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~--~~~~~--~~~--------------~--t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~ 61 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTL--GEFPE--EYH--------------P--TVFENYVTDCRVDGKPVQLALWDTAGQEE 61 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHh--CCCCc--ccC--------------C--cccceEEEEEEECCEEEEEEEEECCCChh
Confidence 4799999999999999999962 21110 000 0 11000 11222222 4578999999988
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCCCchhHH-HHH-HHHHh--cCCCEEEEEeCCCcCC
Q 007325 168 FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVW-RQADK--YGVPRICFVNKMDRLG 221 (608)
Q Consensus 168 f~~~~~~~l~~~D~~i~VvDa~~g~~~~t~-~~~-~~~~~--~~~p~ivviNK~D~~~ 221 (608)
|.......++.+|++++|+|.+..-..... ..| ..+.. .++|+++|.||+|+..
T Consensus 62 ~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~ 119 (187)
T cd04129 62 YERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQ 119 (187)
T ss_pred ccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhh
Confidence 765555567889999999998754333222 123 33322 3689999999999753
No 262
>PRK09866 hypothetical protein; Provisional
Probab=99.40 E-value=5.2e-12 Score=137.55 Aligned_cols=68 Identities=22% Similarity=0.329 Sum_probs=57.6
Q ss_pred CeeEEEEeCCCCCC-----chHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcC--CCEEEEEeCCCcCC
Q 007325 154 KHRINIIDTPGHVD-----FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYG--VPRICFVNKMDRLG 221 (608)
Q Consensus 154 ~~~i~liDTPG~~d-----f~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~--~p~ivviNK~D~~~ 221 (608)
..+++|+||||... +...+..++..+|.+++|+|+..+.....+.+++.+.+.+ .|+++|+||+|+.+
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~d 303 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQD 303 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCC
Confidence 36899999999754 3445677899999999999999988888888888888877 49999999999753
No 263
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.39 E-value=7.2e-12 Score=117.24 Aligned_cols=114 Identities=22% Similarity=0.239 Sum_probs=75.4
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchHH
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (608)
+|+++|..++|||||+++|.... ... ++.+ ..|.........+.-....+.+|||+|+.+|...
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~--~~~-----------~~~~---t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 64 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGE--FPE-----------NYIP---TIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSL 64 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS--TTS-----------SSET---TSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHH
T ss_pred CEEEECCCCCCHHHHHHHHHhhc--ccc-----------cccc---cccccccccccccccccccccccccccccccccc
Confidence 58999999999999999997321 110 0000 0112222222222223457999999999999888
Q ss_pred HHHHHHhcCeEEEEEcCCCCCchhHHHHHH-HHHh---cCCCEEEEEeCCCcCC
Q 007325 172 VERALRVLDGAICLFDSVAGVEPQSETVWR-QADK---YGVPRICFVNKMDRLG 221 (608)
Q Consensus 172 ~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~-~~~~---~~~p~ivviNK~D~~~ 221 (608)
....++.+|++|+|+|.++.-.......|. .+.. .+.|++++.||.|+..
T Consensus 65 ~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~ 118 (162)
T PF00071_consen 65 RDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSD 118 (162)
T ss_dssp HHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGG
T ss_pred ccccccccccccccccccccccccccccccccccccccccccceeeeccccccc
Confidence 888899999999999998654433333332 2222 2478999999999754
No 264
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.39 E-value=4.1e-12 Score=127.62 Aligned_cols=125 Identities=19% Similarity=0.261 Sum_probs=85.3
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCC-
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD- 167 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d- 167 (608)
..|+|.|.|+||+|||||++++. ++..++..+ .+ +|-....+++..++.++++|||||.-|
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT---~AkpEvA~Y---PF------------TTK~i~vGhfe~~~~R~QvIDTPGlLDR 228 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLT---TAKPEVAPY---PF------------TTKGIHVGHFERGYLRIQVIDTPGLLDR 228 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHh---cCCCccCCC---Cc------------cccceeEeeeecCCceEEEecCCcccCC
Confidence 67999999999999999999994 433333222 11 266677788888889999999999876
Q ss_pred -------chHHHHHHHHh-cCeEEEEEcCCC--CCchhHH-HHHHHHH-hcCCCEEEEEeCCCcCCC-cHHHHHHHH
Q 007325 168 -------FTLEVERALRV-LDGAICLFDSVA--GVEPQSE-TVWRQAD-KYGVPRICFVNKMDRLGA-NFFRTRDMI 231 (608)
Q Consensus 168 -------f~~~~~~~l~~-~D~~i~VvDa~~--g~~~~t~-~~~~~~~-~~~~p~ivviNK~D~~~~-~~~~~~~~i 231 (608)
.-.+...|++. .+.+++++|+++ |...... .+|+... ..+.|+++|+||+|.... +.++....+
T Consensus 229 Pl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e~~~~~~~~~ 305 (346)
T COG1084 229 PLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEEKLEEIEASV 305 (346)
T ss_pred ChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccchhHHHHHHHHH
Confidence 22334455654 467788999984 4332222 3444443 356799999999998753 334433333
No 265
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.39 E-value=7.2e-12 Score=121.57 Aligned_cols=66 Identities=21% Similarity=0.169 Sum_probs=47.9
Q ss_pred CeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHH-HHH-HHHHh--cCCCEEEEEeCCCcCC
Q 007325 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVW-RQADK--YGVPRICFVNKMDRLG 221 (608)
Q Consensus 154 ~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~-~~~-~~~~~--~~~p~ivviNK~D~~~ 221 (608)
...+.||||+|+.+. ....+++.+|++|+|+|.++....... ..| ..+.. .++|+++|.||+|+..
T Consensus 65 ~v~l~iwDTaG~~~~--~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~ 134 (195)
T cd01873 65 SVSLRLWDTFGDHDK--DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRY 134 (195)
T ss_pred EEEEEEEeCCCChhh--hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccc
Confidence 467899999998763 233467899999999999876544433 234 33332 3689999999999854
No 266
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.39 E-value=5.8e-12 Score=122.53 Aligned_cols=114 Identities=14% Similarity=0.065 Sum_probs=70.9
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEee-cCeeEEEEeCCCCCCch
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPGHVDFT 169 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPG~~df~ 169 (608)
.+|+++|.+|+|||||+|+|+.... ...+.. ..+. ..+|.... .+.. ....+.+|||||+.+..
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~--~~~~~~-----~~~~------~~~t~~~~--~~~~~~~~~l~l~DtpG~~~~~ 66 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGH--EEEGAA-----PTGV------VETTMKRT--PYPHPKFPNVTLWDLPGIGSTA 66 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCC--CCCCcc-----ccCc------cccccCce--eeecCCCCCceEEeCCCCCccc
Confidence 4799999999999999999962111 001111 1110 00111111 1111 12468999999987643
Q ss_pred HHHHHH-----HHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCC
Q 007325 170 LEVERA-----LRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (608)
Q Consensus 170 ~~~~~~-----l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~ 221 (608)
.....+ +..+|.+++|.| ..........++.+...+.|+++|+||+|+..
T Consensus 67 ~~~~~~l~~~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~ 121 (197)
T cd04104 67 FPPDDYLEEMKFSEYDFFIIISS--TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDL 121 (197)
T ss_pred CCHHHHHHHhCccCcCEEEEEeC--CCCCHHHHHHHHHHHHhCCCEEEEEecccchh
Confidence 222222 455688888754 34566667777888888999999999999843
No 267
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.38 E-value=2.5e-12 Score=118.27 Aligned_cols=117 Identities=17% Similarity=0.152 Sum_probs=80.7
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCc
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 168 (608)
...+|.|+|.+|+|||+|+|++++..-.......+ |...-.....+.-.-..+.+|||.|+++|
T Consensus 8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTI----------------gadFltKev~Vd~~~vtlQiWDTAGQERF 71 (210)
T KOG0394|consen 8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATI----------------GADFLTKEVQVDDRSVTLQIWDTAGQERF 71 (210)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHHHHhcccc----------------chhheeeEEEEcCeEEEEEEEecccHHHh
Confidence 35789999999999999999998442211100000 00111111222223356789999999999
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHH--HHh------cCCCEEEEEeCCCcCC
Q 007325 169 TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQ--ADK------YGVPRICFVNKMDRLG 221 (608)
Q Consensus 169 ~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~--~~~------~~~p~ivviNK~D~~~ 221 (608)
.+.-...+|.+|.+++|.|....-.....+.|+. +.. ...|+|++.||+|..+
T Consensus 72 qsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~ 132 (210)
T KOG0394|consen 72 QSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDG 132 (210)
T ss_pred hhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCC
Confidence 9999999999999999999987655556666642 222 3569999999999865
No 268
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=3.2e-12 Score=117.72 Aligned_cols=115 Identities=20% Similarity=0.185 Sum_probs=79.4
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchH
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~ 170 (608)
-++.++|..|+|||.|+-++....-. .+.+ -.-|+.......++.-+..++++|||.|++.|.+
T Consensus 7 fKyIiiGd~gVGKSclllrf~~krF~-----~~hd-----------~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frs 70 (216)
T KOG0098|consen 7 FKYIIIGDTGVGKSCLLLRFTDKRFQ-----PVHD-----------LTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRS 70 (216)
T ss_pred EEEEEECCCCccHHHHHHHHhccCcc-----cccc-----------ceeeeeeceeEEEEcCceEEEEEEecCCcHHHHH
Confidence 47889999999999999999622111 1111 0112222222333333456789999999999999
Q ss_pred HHHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHHH---hcCCCEEEEEeCCCcCC
Q 007325 171 EVERALRVLDGAICLFDSVAGVEPQSETVW-RQAD---KYGVPRICFVNKMDRLG 221 (608)
Q Consensus 171 ~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~~---~~~~p~ivviNK~D~~~ 221 (608)
-+.++++.+-+||+|.|.+..-.......| ..++ ..++-++++.||+|+..
T Consensus 71 v~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~ 125 (216)
T KOG0098|consen 71 VTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEA 125 (216)
T ss_pred HHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhc
Confidence 999999999999999999865444444444 2233 34667788889999864
No 269
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=2.8e-12 Score=118.83 Aligned_cols=113 Identities=23% Similarity=0.239 Sum_probs=87.9
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCc
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 168 (608)
+-..|.++|--+|||||++..|- .+.+... . -|+..++-.+.+++..+.+||.-|+..+
T Consensus 16 ~e~~IlmlGLD~AGKTTILykLk--~~E~vtt------------v-------PTiGfnVE~v~ykn~~f~vWDvGGq~k~ 74 (181)
T KOG0070|consen 16 KEMRILMVGLDAAGKTTILYKLK--LGEIVTT------------V-------PTIGFNVETVEYKNISFTVWDVGGQEKL 74 (181)
T ss_pred ceEEEEEEeccCCCceeeeEeec--cCCcccC------------C-------CccccceeEEEEcceEEEEEecCCCccc
Confidence 34689999999999999999883 1211110 1 1888888889999999999999999999
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCC--CchhHHHHHHHHHh---cCCCEEEEEeCCCcCCC
Q 007325 169 TLEVERALRVLDGAICLFDSVAG--VEPQSETVWRQADK---YGVPRICFVNKMDRLGA 222 (608)
Q Consensus 169 ~~~~~~~l~~~D~~i~VvDa~~g--~~~~t~~~~~~~~~---~~~p~ivviNK~D~~~~ 222 (608)
...+..++...+++|+|||+++. +...-.++.+.+.. .+.|++++.||.|++++
T Consensus 75 R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~a 133 (181)
T KOG0070|consen 75 RPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGA 133 (181)
T ss_pred ccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhcccc
Confidence 99999999999999999999963 22233334444433 37899999999998875
No 270
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.37 E-value=3.7e-12 Score=114.19 Aligned_cols=116 Identities=18% Similarity=0.203 Sum_probs=83.5
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCch
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~ 169 (608)
...|.+||.+|+|||+|+-+++.++-. |-.+ ..-|+........+.-+..++.||||+|+++|.
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~fd--------------~~~~--~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFR 74 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNTFD--------------DLHP--TTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFR 74 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcccC--------------ccCC--ceeeeeEEEEEEEEcCceEEEEEEeccchHhhh
Confidence 368999999999999999999732211 1000 012334444555555566789999999999999
Q ss_pred HHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHH-HHh----cCCCEEEEEeCCCcCC
Q 007325 170 LEVERALRVLDGAICLFDSVAGVEPQSETVWRQ-ADK----YGVPRICFVNKMDRLG 221 (608)
Q Consensus 170 ~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~-~~~----~~~p~ivviNK~D~~~ 221 (608)
..+..++|.+.++|+|.|.+.--.....++|.. +.. .++-.++|.||+|+..
T Consensus 75 tLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes 131 (209)
T KOG0080|consen 75 TLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKES 131 (209)
T ss_pred ccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchh
Confidence 999999999999999999996555555566633 332 3455678999999753
No 271
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.36 E-value=3.3e-12 Score=120.82 Aligned_cols=111 Identities=17% Similarity=0.211 Sum_probs=68.5
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEee---cCeeEEEEeCCCCC
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW---NKHRINIIDTPGHV 166 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~---~~~~i~liDTPG~~ 166 (608)
.+.|.|+|+.|+|||+|+..|.+... .. |+ .++.. ...+.. .+..+.+||+|||.
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~--~~--------T~-----------tS~e~-n~~~~~~~~~~~~~~lvD~PGH~ 60 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKT--VP--------TV-----------TSMEN-NIAYNVNNSKGKKLRLVDIPGHP 60 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS-------------B--------------SSE-EEECCGSSTCGTCECEEEETT-H
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCc--CC--------ee-----------ccccC-CceEEeecCCCCEEEEEECCCcH
Confidence 46899999999999999999974311 10 00 02211 112222 45679999999999
Q ss_pred CchHHHHHH---HHhcCeEEEEEcCCCCCchhHHHHHHHH-------H--hcCCCEEEEEeCCCcCCCc
Q 007325 167 DFTLEVERA---LRVLDGAICLFDSVAGVEPQSETVWRQA-------D--KYGVPRICFVNKMDRLGAN 223 (608)
Q Consensus 167 df~~~~~~~---l~~~D~~i~VvDa~~g~~~~t~~~~~~~-------~--~~~~p~ivviNK~D~~~~~ 223 (608)
+........ +..+.++|+|||++. ......++.+++ . ..++|++|+.||.|+..+.
T Consensus 61 rlr~~~~~~~~~~~~~k~IIfvvDSs~-~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~ 128 (181)
T PF09439_consen 61 RLRSKLLDELKYLSNAKGIIFVVDSST-DQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK 128 (181)
T ss_dssp CCCHHHHHHHHHHGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred HHHHHHHHhhhchhhCCEEEEEEeCcc-chhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence 998877776 889999999999984 222222222221 1 3578999999999998765
No 272
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=4.4e-12 Score=132.96 Aligned_cols=116 Identities=17% Similarity=0.137 Sum_probs=87.0
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 167 (608)
+.-.+|+|+|.||+|||||+|+|....-. + .....|+|.+.-...++.+|+.+.|+||.|..+
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drs---I--------------VSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe 328 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRS---I--------------VSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIRE 328 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCce---E--------------eCCCCCcchhhheeEeecCCeEEEEEecccccc
Confidence 34589999999999999999999632221 1 223467799999999999999999999999866
Q ss_pred ---------chHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCC------------CEEEEEeCCCcC
Q 007325 168 ---------FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGV------------PRICFVNKMDRL 220 (608)
Q Consensus 168 ---------f~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~------------p~ivviNK~D~~ 220 (608)
-.......+..+|.+++|||+.+....+...+.+.+...+. |.+++.||+|+.
T Consensus 329 ~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~ 402 (531)
T KOG1191|consen 329 ESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLV 402 (531)
T ss_pred ccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhcc
Confidence 12334557788999999999988777777777776665444 555556666643
No 273
>PRK13768 GTPase; Provisional
Probab=99.33 E-value=2e-11 Score=123.22 Aligned_cols=70 Identities=23% Similarity=0.337 Sum_probs=49.5
Q ss_pred CeeEEEEeCCCCCCch---HH---HHHHHHh--cCeEEEEEcCCCCCchhHHHHHHHHH-----hcCCCEEEEEeCCCcC
Q 007325 154 KHRINIIDTPGHVDFT---LE---VERALRV--LDGAICLFDSVAGVEPQSETVWRQAD-----KYGVPRICFVNKMDRL 220 (608)
Q Consensus 154 ~~~i~liDTPG~~df~---~~---~~~~l~~--~D~~i~VvDa~~g~~~~t~~~~~~~~-----~~~~p~ivviNK~D~~ 220 (608)
+..+.+|||||+.++. .. ..+.+.. .+++++|+|+..+....+......+. ..++|+++|+||+|+.
T Consensus 96 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 96 DADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLL 175 (253)
T ss_pred CCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhc
Confidence 3479999999987742 22 2223333 79999999998877666544433322 5789999999999987
Q ss_pred CCc
Q 007325 221 GAN 223 (608)
Q Consensus 221 ~~~ 223 (608)
..+
T Consensus 176 ~~~ 178 (253)
T PRK13768 176 SEE 178 (253)
T ss_pred Cch
Confidence 643
No 274
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.32 E-value=1.8e-11 Score=119.37 Aligned_cols=137 Identities=19% Similarity=0.192 Sum_probs=80.0
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccc---eeecc-------CC-----ccccchhhhh------hcceeEeec
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKI---GEVHE-------GT-----ATMDWMEQEQ------ERGITITSA 146 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~---g~~~~-------g~-----~~~d~~~~e~------~~giTi~~~ 146 (608)
++...|.++|..|+||||++.+|..-.+..... -.+++ +. .+.+|.+..+ ..||+...+
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLN 96 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLN 96 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHH
Confidence 344688999999999999999996332222111 11111 10 1223333333 233433333
Q ss_pred EEEEee-----------cCeeEEEEeCCCCCCc------hHHHHHHHHhc--CeEEEEEcCCCCCchhH-----HHHHHH
Q 007325 147 ATTTYW-----------NKHRINIIDTPGHVDF------TLEVERALRVL--DGAICLFDSVAGVEPQS-----ETVWRQ 202 (608)
Q Consensus 147 ~~~~~~-----------~~~~i~liDTPG~~df------~~~~~~~l~~~--D~~i~VvDa~~g~~~~t-----~~~~~~ 202 (608)
.....+ ...++.||||||+++- ......++..+ -+++.|||....-.+.| ......
T Consensus 97 LF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSi 176 (366)
T KOG1532|consen 97 LFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSI 176 (366)
T ss_pred HHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHH
Confidence 222222 3467999999999872 11222333322 45667999875444433 344566
Q ss_pred HHhcCCCEEEEEeCCCcCCCcH
Q 007325 203 ADKYGVPRICFVNKMDRLGANF 224 (608)
Q Consensus 203 ~~~~~~p~ivviNK~D~~~~~~ 224 (608)
+.+.++|.|+++||+|..+..+
T Consensus 177 lyktklp~ivvfNK~Dv~d~~f 198 (366)
T KOG1532|consen 177 LYKTKLPFIVVFNKTDVSDSEF 198 (366)
T ss_pred HHhccCCeEEEEecccccccHH
Confidence 7789999999999999887653
No 275
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=3.3e-11 Score=106.55 Aligned_cols=116 Identities=18% Similarity=0.103 Sum_probs=81.1
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchH
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~ 170 (608)
-++.|+|...+|||+++-+.+..+-...-.. .-|+..+.....-..+..++.+|||.|++.+..
T Consensus 22 fKlliiGnssvGKTSfl~ry~ddSFt~afvs----------------TvGidFKvKTvyr~~kRiklQiwDTagqEryrt 85 (193)
T KOG0093|consen 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVS----------------TVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRT 85 (193)
T ss_pred eeEEEEccCCccchhhhHHhhccccccceee----------------eeeeeEEEeEeeecccEEEEEEEecccchhhhH
Confidence 4789999999999999998863222111110 123333333222222446789999999999999
Q ss_pred HHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHH----HhcCCCEEEEEeCCCcCCC
Q 007325 171 EVERALRVLDGAICLFDSVAGVEPQSETVWRQA----DKYGVPRICFVNKMDRLGA 222 (608)
Q Consensus 171 ~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~----~~~~~p~ivviNK~D~~~~ 222 (608)
.+..++|.+++.|++.|.++.-.....+-|-.. ...+.|+|+|.||+|+...
T Consensus 86 iTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~e 141 (193)
T KOG0093|consen 86 ITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSE 141 (193)
T ss_pred HHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccc
Confidence 999999999999999999975444444444322 2358999999999998754
No 276
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.31 E-value=3.5e-11 Score=117.16 Aligned_cols=115 Identities=13% Similarity=0.131 Sum_probs=78.1
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEe-----ecCeeEEEEeCCCCC
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY-----WNKHRINIIDTPGHV 166 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~-----~~~~~i~liDTPG~~ 166 (608)
+|+++|..++|||||+++++...- ... + ...-|.++......+. -....++||||+|+.
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f--~~~-----------~---~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e 65 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQV--LGR-----------P---SWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSE 65 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC--CCC-----------C---CcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCch
Confidence 689999999999999999972211 000 0 0001212222222221 123578999999999
Q ss_pred CchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHH-HHHh----------------------cCCCEEEEEeCCCcCCC
Q 007325 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWR-QADK----------------------YGVPRICFVNKMDRLGA 222 (608)
Q Consensus 167 df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~-~~~~----------------------~~~p~ivviNK~D~~~~ 222 (608)
+|.......++.+|++|+|+|.++.........|. .+.. .++|+++|.||+|+...
T Consensus 66 ~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 66 SVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred hHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh
Confidence 99988889999999999999999865554444442 2221 36899999999998653
No 277
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.29 E-value=3.3e-11 Score=123.10 Aligned_cols=136 Identities=19% Similarity=0.214 Sum_probs=86.1
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCCCCCCc
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDF 168 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~df 168 (608)
-+|+++|++|+|||||+|+|+...- ....+... .......+.+++......+..++ .++++|||||+.++
T Consensus 5 f~I~vvG~sg~GKSTliN~L~~~~~-~~~~~~~~-------~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~ 76 (276)
T cd01850 5 FNIMVVGESGLGKSTFINTLFNTKL-IPSDYPPD-------PAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDN 76 (276)
T ss_pred EEEEEEcCCCCCHHHHHHHHHcCCC-ccccCCCC-------ccccccCCceEEEEEEEEEEECCEEEEEEEEecCCcccc
Confidence 4899999999999999999963211 11111100 00111222334444455555555 46999999998775
Q ss_pred hHH---------------------HHHHHH-------hcCeEEEEEcCC-CCCchhHHHHHHHHHhcCCCEEEEEeCCCc
Q 007325 169 TLE---------------------VERALR-------VLDGAICLFDSV-AGVEPQSETVWRQADKYGVPRICFVNKMDR 219 (608)
Q Consensus 169 ~~~---------------------~~~~l~-------~~D~~i~VvDa~-~g~~~~t~~~~~~~~~~~~p~ivviNK~D~ 219 (608)
... .....+ .+|++++++++. +++...+.+.++.+.. ++|+++|+||+|+
T Consensus 77 ~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-~v~vi~VinK~D~ 155 (276)
T cd01850 77 INNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-RVNIIPVIAKADT 155 (276)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-cCCEEEEEECCCc
Confidence 321 111112 358889999887 5778888888888875 8999999999999
Q ss_pred CCC-cHHHHHHHHHHhh
Q 007325 220 LGA-NFFRTRDMIVTNL 235 (608)
Q Consensus 220 ~~~-~~~~~~~~i~~~l 235 (608)
... +.....+.+++.+
T Consensus 156 l~~~e~~~~k~~i~~~l 172 (276)
T cd01850 156 LTPEELKEFKQRIMEDI 172 (276)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 653 2334444454444
No 278
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.29 E-value=1.4e-11 Score=123.22 Aligned_cols=205 Identities=17% Similarity=0.221 Sum_probs=125.5
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCc
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 168 (608)
-.-.|++||.|++|||||+++| ++...+.+.++. +|.......+.+++.+|+++|+||.+.-
T Consensus 62 Gda~v~lVGfPsvGKStLL~~L---Tnt~seva~y~F---------------TTl~~VPG~l~Y~ga~IQild~Pgii~g 123 (365)
T COG1163 62 GDATVALVGFPSVGKSTLLNKL---TNTKSEVADYPF---------------TTLEPVPGMLEYKGAQIQLLDLPGIIEG 123 (365)
T ss_pred CCeEEEEEcCCCccHHHHHHHH---hCCCccccccCc---------------eecccccceEeecCceEEEEcCcccccC
Confidence 3468999999999999999999 455555544321 3777788889999999999999997652
Q ss_pred -------hHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCC-----CEEEEEeCCCcCC-----------CcHH
Q 007325 169 -------TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGV-----PRICFVNKMDRLG-----------ANFF 225 (608)
Q Consensus 169 -------~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~-----p~ivviNK~D~~~-----------~~~~ 225 (608)
..++....|.||.+++|+|+.+.... ...+.+.+...++ |.-+.+.|-+.-+ .+ .
T Consensus 124 as~g~grG~~vlsv~R~ADlIiiVld~~~~~~~-~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d-~ 201 (365)
T COG1163 124 ASSGRGRGRQVLSVARNADLIIIVLDVFEDPHH-RDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLD-E 201 (365)
T ss_pred cccCCCCcceeeeeeccCCEEEEEEecCCChhH-HHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCC-H
Confidence 35688889999999999999975433 4445666766554 3334444433221 22 2
Q ss_pred HHHHHHHHhhCCccEEEeccCCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHH
Q 007325 226 RTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDE 305 (608)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~ 305 (608)
..+..+.+.++++...+.+ .++-....++|.+... +.|.+. -.....
T Consensus 202 ~~ir~iL~Ey~I~nA~V~I--r~dvTlDd~id~l~~n-rvY~p~----l~v~NK-------------------------- 248 (365)
T COG1163 202 DTVRAILREYRIHNADVLI--REDVTLDDLIDALEGN-RVYKPA----LYVVNK-------------------------- 248 (365)
T ss_pred HHHHHHHHHhCcccceEEE--ecCCcHHHHHHHHhhc-ceeeee----EEEEec--------------------------
Confidence 3455555566665443322 2223333334443322 212110 000000
Q ss_pred HHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeeccCCCCChHHHHHHHHHhCC
Q 007325 306 AMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLP 360 (608)
Q Consensus 306 l~e~~l~~~~~~~~el~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lP 360 (608)
...++.+++....+. ...+++||.++.|+++|.+.|.+.|-
T Consensus 249 -------iD~~~~e~~~~l~~~-------~~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 249 -------IDLPGLEELERLARK-------PNSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred -------ccccCHHHHHHHHhc-------cceEEEecccCCCHHHHHHHHHHhhC
Confidence 011222232222221 15777899999999999999998874
No 279
>PLN00023 GTP-binding protein; Provisional
Probab=99.29 E-value=4e-11 Score=122.85 Aligned_cols=122 Identities=17% Similarity=0.143 Sum_probs=80.5
Q ss_pred CCCCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEee------------
Q 007325 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW------------ 152 (608)
Q Consensus 85 ~~~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~------------ 152 (608)
.++....+|+++|..++|||||+++|+... .... ....-|.+.......+..
T Consensus 16 ~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~--F~~~--------------~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~ 79 (334)
T PLN00023 16 GPPCGQVRVLVVGDSGVGKSSLVHLIVKGS--SIAR--------------PPQTIGCTVGVKHITYGSPGSSSNSIKGDS 79 (334)
T ss_pred CCCccceEEEEECCCCCcHHHHHHHHhcCC--cccc--------------cCCceeeeEEEEEEEECCcccccccccccC
Confidence 344455789999999999999999997221 1000 000112222222222210
Q ss_pred -cCeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHHHhc---------------CCCEEEEEe
Q 007325 153 -NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADKY---------------GVPRICFVN 215 (608)
Q Consensus 153 -~~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~~~~---------------~~p~ivviN 215 (608)
....++||||+|+..|......+++.+|++|+|+|.++.........| ..+... ++|+++|.|
T Consensus 80 ~k~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGN 159 (334)
T PLN00023 80 ERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGN 159 (334)
T ss_pred CceEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEE
Confidence 235699999999999999999999999999999999874433333333 333322 489999999
Q ss_pred CCCcCCC
Q 007325 216 KMDRLGA 222 (608)
Q Consensus 216 K~D~~~~ 222 (608)
|+|+...
T Consensus 160 K~DL~~~ 166 (334)
T PLN00023 160 KADIAPK 166 (334)
T ss_pred Ccccccc
Confidence 9998653
No 280
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.28 E-value=7e-12 Score=111.16 Aligned_cols=113 Identities=20% Similarity=0.194 Sum_probs=72.4
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchHH
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (608)
+|+++|..|+|||||+++|+..... +....+...+.++.............+.+||++|...+...
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~ 66 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFP--------------DNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQ 66 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS----------------------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCT
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCc--------------ccccccccCCCcEEEEEEEecCCceEEEEEecCccceeccc
Confidence 4889999999999999999733221 00001111222333333344344456899999999888776
Q ss_pred HHHHHHhcCeEEEEEcCCCCCchhH-HHHH---HHHHh--cCCCEEEEEeCCC
Q 007325 172 VERALRVLDGAICLFDSVAGVEPQS-ETVW---RQADK--YGVPRICFVNKMD 218 (608)
Q Consensus 172 ~~~~l~~~D~~i~VvDa~~g~~~~t-~~~~---~~~~~--~~~p~ivviNK~D 218 (608)
....+..+|++|+|+|.++...... ..++ ..... .++|+++|.||.|
T Consensus 67 ~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 67 HQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp SHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred ccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 6667999999999999997432222 2222 22222 4599999999998
No 281
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.27 E-value=1e-10 Score=121.29 Aligned_cols=28 Identities=18% Similarity=0.119 Sum_probs=24.9
Q ss_pred ceeeeeeccCCCCChHHHHH-HHHHhCCC
Q 007325 334 FVPVLCGSAFKNKGVQPLLD-AVVDYLPS 361 (608)
Q Consensus 334 ~~Pv~~~SA~~~~Gi~~Lld-~i~~~lP~ 361 (608)
+.+++++||+.+.|+..|.+ .+.+++|.
T Consensus 242 ~~~iI~iSA~~e~~L~~L~~~~i~~~lPe 270 (318)
T cd01899 242 DEIVVPTSAEAELALRRAAKQGLIKYDPG 270 (318)
T ss_pred CCeEEEEeCcccccHHHHHHhhHHHhCCC
Confidence 45788999999999999998 69999984
No 282
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=4.7e-11 Score=112.56 Aligned_cols=119 Identities=14% Similarity=0.114 Sum_probs=84.3
Q ss_pred CCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCC
Q 007325 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (608)
Q Consensus 87 ~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 166 (608)
-+..-.|+++|.+++|||-|+.++..+--..... ..-|+........+.-+-.+.+||||.|+.
T Consensus 11 ~dylFKiVliGDS~VGKsnLlsRftrnEF~~~Sk----------------sTIGvef~t~t~~vd~k~vkaqIWDTAGQE 74 (222)
T KOG0087|consen 11 YDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESK----------------STIGVEFATRTVNVDGKTVKAQIWDTAGQE 74 (222)
T ss_pred cceEEEEEEeCCCccchhHHHHHhcccccCcccc----------------cceeEEEEeeceeecCcEEEEeeecccchh
Confidence 3456789999999999999999995221111100 011233333333333344577999999999
Q ss_pred CchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHHHh---cCCCEEEEEeCCCcCC
Q 007325 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 221 (608)
Q Consensus 167 df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~~~---~~~p~ivviNK~D~~~ 221 (608)
+|......+++.+-+|++|.|.+.....+....| ++++. .++++++|.||+|+..
T Consensus 75 RyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~ 133 (222)
T KOG0087|consen 75 RYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNH 133 (222)
T ss_pred hhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhh
Confidence 9999999999999999999999876665555444 45544 4789999999999854
No 283
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.24 E-value=1.4e-10 Score=120.57 Aligned_cols=137 Identities=18% Similarity=0.137 Sum_probs=77.0
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhh---CCcccceeeccCCcc-----c-cchhhh---hhcceeEeecEEE--E---
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYT---GRNYKIGEVHEGTAT-----M-DWMEQE---QERGITITSAATT--T--- 150 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~---g~~~~~g~~~~g~~~-----~-d~~~~e---~~~giTi~~~~~~--~--- 150 (608)
.+...|+|+|.+|+|||||+++|.... |.....-.+++.+.. + |....+ ...+.-+.+.... +
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~~ 133 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGGV 133 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccch
Confidence 345799999999999999999986332 222222233333322 1 322221 1122222221111 1
Q ss_pred -----------eecCeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHH--HHHHHHhcCCCEEEEEeCC
Q 007325 151 -----------YWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSET--VWRQADKYGVPRICFVNKM 217 (608)
Q Consensus 151 -----------~~~~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~--~~~~~~~~~~p~ivviNK~ 217 (608)
...++.+.||||+|...- +.. ....+|.+++|++...|..-|... .++ +.-++|+||+
T Consensus 134 a~~~~~~~~~~~~~g~d~viieT~Gv~qs--~~~-i~~~aD~vlvv~~p~~gd~iq~~k~gi~E------~aDIiVVNKa 204 (332)
T PRK09435 134 ARKTRETMLLCEAAGYDVILVETVGVGQS--ETA-VAGMVDFFLLLQLPGAGDELQGIKKGIME------LADLIVINKA 204 (332)
T ss_pred HHHHHHHHHHHhccCCCEEEEECCCCccc--hhH-HHHhCCEEEEEecCCchHHHHHHHhhhhh------hhheEEeehh
Confidence 124789999999998742 222 567899999998754443333321 222 2348999999
Q ss_pred CcCCCc-HHHHHHHHHH
Q 007325 218 DRLGAN-FFRTRDMIVT 233 (608)
Q Consensus 218 D~~~~~-~~~~~~~i~~ 233 (608)
|+.... .++...++++
T Consensus 205 Dl~~~~~a~~~~~el~~ 221 (332)
T PRK09435 205 DGDNKTAARRAAAEYRS 221 (332)
T ss_pred cccchhHHHHHHHHHHH
Confidence 987542 2333444443
No 284
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=1.2e-10 Score=103.17 Aligned_cols=116 Identities=22% Similarity=0.304 Sum_probs=79.8
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCch
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~ 169 (608)
.-+|++||..|+|||.|+.++. .|. ...|. |.+ -|+..-.....+.-+..++.+|||.|+.+|.
T Consensus 7 lfkivlvgnagvgktclvrrft--qgl-fppgq---gat----------igvdfmiktvev~gekiklqiwdtagqerfr 70 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFT--QGL-FPPGQ---GAT----------IGVDFMIKTVEVNGEKIKLQIWDTAGQERFR 70 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhh--ccC-CCCCC---Cce----------eeeeEEEEEEEECCeEEEEEEeeccchHHHH
Confidence 4589999999999999999995 232 11221 011 1111122222232345678999999999999
Q ss_pred HHHHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHHHh---cCCCEEEEEeCCCcCC
Q 007325 170 LEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 221 (608)
Q Consensus 170 ~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~~~---~~~p~ivviNK~D~~~ 221 (608)
+.+.++++.+..+|+|.|.++........-| +.... .++--|+|.||+|+.+
T Consensus 71 sitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~d 126 (213)
T KOG0095|consen 71 SITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLAD 126 (213)
T ss_pred HHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhh
Confidence 9999999999999999999986665554333 33333 3444578999999864
No 285
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=4.5e-11 Score=109.02 Aligned_cols=119 Identities=19% Similarity=0.155 Sum_probs=86.8
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchH
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~ 170 (608)
-.|.|+|.-||||||+++++-... ...-+... . .+--.|+..+..++...+..+.+||.-|+....+
T Consensus 18 y~vlIlgldnAGKttfLe~~Kt~~--~~~~~~l~----~-------~ki~~tvgLnig~i~v~~~~l~fwdlgGQe~lrS 84 (197)
T KOG0076|consen 18 YSVLILGLDNAGKTTFLEALKTDF--SKAYGGLN----P-------SKITPTVGLNIGTIEVCNAPLSFWDLGGQESLRS 84 (197)
T ss_pred hhheeeccccCCchhHHHHHHHHH--HhhhcCCC----H-------HHeecccceeecceeeccceeEEEEcCChHHHHH
Confidence 488999999999999999983110 00001100 0 0011266777777777889999999999999999
Q ss_pred HHHHHHHhcCeEEEEEcCCCCC-----chhHHHHHHHHHhcCCCEEEEEeCCCcCCC
Q 007325 171 EVERALRVLDGAICLFDSVAGV-----EPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (608)
Q Consensus 171 ~~~~~l~~~D~~i~VvDa~~g~-----~~~t~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (608)
.+..++..+.++|+||||++.- ..+-+.+...-...++|+++.+||-|+.++
T Consensus 85 lw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~ 141 (197)
T KOG0076|consen 85 LWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNA 141 (197)
T ss_pred HHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhh
Confidence 9999999999999999999731 222333444445679999999999998764
No 286
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=1.4e-10 Score=103.12 Aligned_cols=117 Identities=16% Similarity=0.146 Sum_probs=82.6
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCch
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~ 169 (608)
.-++.++|..|.|||.|+.+++.+...... ...-|+...+..+++-.+..++.+|||.|+.+|.
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDds----------------sHTiGveFgSrIinVGgK~vKLQIWDTAGQErFR 72 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDS----------------SHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFR 72 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhhcccc----------------cceeeeeecceeeeecCcEEEEEEeecccHHHHH
Confidence 457899999999999999999854331111 1112344444444444456789999999999999
Q ss_pred HHHHHHHHhcCeEEEEEcCCCCCchhHHHHH-H---HHHhcCCCEEEEEeCCCcCCC
Q 007325 170 LEVERALRVLDGAICLFDSVAGVEPQSETVW-R---QADKYGVPRICFVNKMDRLGA 222 (608)
Q Consensus 170 ~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~---~~~~~~~p~ivviNK~D~~~~ 222 (608)
+-...+++.+-++++|.|++..-......-| . .+...++-++++.||-|+...
T Consensus 73 SVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~ 129 (214)
T KOG0086|consen 73 SVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPE 129 (214)
T ss_pred HHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChh
Confidence 9999999999999999999965444443333 2 223345556777899998654
No 287
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.20 E-value=7.1e-11 Score=104.52 Aligned_cols=116 Identities=20% Similarity=0.239 Sum_probs=80.6
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchH
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~ 170 (608)
-..+|+|.+++|||+|+-++...+-. |+..+ .-|+........+.-...++.||||+|++.|..
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs---------~sYit-------TiGvDfkirTv~i~G~~VkLqIwDtAGqErFrt 72 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFS---------GSYIT-------TIGVDFKIRTVDINGDRVKLQIWDTAGQERFRT 72 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccc---------cceEE-------EeeeeEEEEEeecCCcEEEEEEeecccHHHHHH
Confidence 45679999999999999998522111 11000 012222222223333446789999999999999
Q ss_pred HHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhc---CCCEEEEEeCCCcCCC
Q 007325 171 EVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY---GVPRICFVNKMDRLGA 222 (608)
Q Consensus 171 ~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~---~~p~ivviNK~D~~~~ 222 (608)
.+..+++...++++|.|.+.+-....-.-|-+-.+. .+|-++|.||.|.++-
T Consensus 73 itstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~R 127 (198)
T KOG0079|consen 73 ITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPER 127 (198)
T ss_pred HHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccc
Confidence 999999999999999999987666655555443333 4677999999997653
No 288
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.20 E-value=1.5e-11 Score=109.85 Aligned_cols=115 Identities=17% Similarity=0.131 Sum_probs=79.3
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchH
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~ 170 (608)
-.|+++|..-+|||+|+-+++.+...-.....+.. +......++.-....++||||.|+.+|..
T Consensus 14 FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQA----------------SF~~kk~n~ed~ra~L~IWDTAGQErfHA 77 (218)
T KOG0088|consen 14 FKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQA----------------SFQNKKVNVEDCRADLHIWDTAGQERFHA 77 (218)
T ss_pred eEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHH----------------HHhhcccccccceeeeeeeeccchHhhhc
Confidence 57899999999999999998744322111111100 11111222222345789999999999988
Q ss_pred HHHHHHHhcCeEEEEEcCCCCCchhHHHHH----HHHHhcCCCEEEEEeCCCcCC
Q 007325 171 EVERALRVLDGAICLFDSVAGVEPQSETVW----RQADKYGVPRICFVNKMDRLG 221 (608)
Q Consensus 171 ~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~----~~~~~~~~p~ivviNK~D~~~ 221 (608)
.-.-+++.+|++++|.|.++.-..|-..-| +.+....+-.+||.||+|+..
T Consensus 78 LGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEe 132 (218)
T KOG0088|consen 78 LGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEE 132 (218)
T ss_pred cCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHH
Confidence 888899999999999999976665555444 333445677889999999854
No 289
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.19 E-value=8.8e-11 Score=117.15 Aligned_cols=129 Identities=16% Similarity=0.224 Sum_probs=62.3
Q ss_pred EEcCCCCchHHHHHHHHHhhCC---cccceeeccCCccccchhh------------hhhcc------eeEee--cEEEEe
Q 007325 95 IMAHIDAGKTTTTERVLFYTGR---NYKIGEVHEGTATMDWMEQ------------EQERG------ITITS--AATTTY 151 (608)
Q Consensus 95 ivG~~~~GKTTL~~~ll~~~g~---~~~~g~~~~g~~~~d~~~~------------e~~~g------iTi~~--~~~~~~ 151 (608)
++|++||||||++.++...... ....-.++++....+|.+. ..+.+ ++... ....+.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~~~~y~~~iDird~i~~~evm~~~~LGPNGal~~~me~l~~~~d 80 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVENLPYPPDIDIRDLISVEEVMEEYGLGPNGALIYCMEYLEENID 80 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S--SS--SEEGGGT--HHHHHTT-T--HHHHHHHHHHHHGGGHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhcccccCchHHHHhhhhhhhhhhhcCcCCcHHHHHHHHHHHHHHH
Confidence 6899999999999999643332 2233455665543333221 11100 10000 000111
Q ss_pred e-------cCeeEEEEeCCCCCCchHHHHHHH--------HhcCeEEEEEcCCCCCchhHH-----HHHHHHHhcCCCEE
Q 007325 152 W-------NKHRINIIDTPGHVDFTLEVERAL--------RVLDGAICLFDSVAGVEPQSE-----TVWRQADKYGVPRI 211 (608)
Q Consensus 152 ~-------~~~~i~liDTPG~~df~~~~~~~l--------~~~D~~i~VvDa~~g~~~~t~-----~~~~~~~~~~~p~i 211 (608)
| ....+.|+||||+.++.......- ...=++|+++|+..-..+... ..+....+.++|++
T Consensus 81 ~l~~~i~~~~~~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~v 160 (238)
T PF03029_consen 81 WLDEEIEKYEDDYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHV 160 (238)
T ss_dssp HHHHHHHHHH-SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHhhcCCcEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEE
Confidence 1 122799999999998654433332 223468889999854332221 12233456899999
Q ss_pred EEEeCCCcCCCc
Q 007325 212 CFVNKMDRLGAN 223 (608)
Q Consensus 212 vviNK~D~~~~~ 223 (608)
.|+||+|+....
T Consensus 161 nvlsK~Dl~~~~ 172 (238)
T PF03029_consen 161 NVLSKIDLLSKY 172 (238)
T ss_dssp EEE--GGGS-HH
T ss_pred EeeeccCcccch
Confidence 999999998744
No 290
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.18 E-value=3.8e-10 Score=110.63 Aligned_cols=130 Identities=16% Similarity=0.169 Sum_probs=73.8
Q ss_pred ccCCCCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCc--cccchhhhhhcce---eEeecEEEE-------
Q 007325 83 RVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTA--TMDWMEQEQERGI---TITSAATTT------- 150 (608)
Q Consensus 83 ~~~~~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~--~~d~~~~e~~~gi---Ti~~~~~~~------- 150 (608)
...+...+++|+++|+.|+|||||+++++...+...+.+ +..+.. ..|....+ ..|. .+...+.++
T Consensus 15 ~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~-v~~~~~~~~~D~~~~~-~~~~~~~~l~~gcic~~~~~~~~ 92 (207)
T TIGR00073 15 ERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIA-VIEGDVITKFDAERLR-KYGAPAIQINTGKECHLDAHMVA 92 (207)
T ss_pred HHhhhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEE-EEECCCCCcccHHHHH-HcCCcEEEEcCCCcccCChHHHH
Confidence 344556789999999999999999999987644322222 212222 12332222 2221 122221111
Q ss_pred ------eecCeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCC
Q 007325 151 ------YWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (608)
Q Consensus 151 ------~~~~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~ 221 (608)
...+..+.||+|.|....... .....+..+.|+|+.++..... +.....+.|.++++||+|+..
T Consensus 93 ~~l~~~~~~~~d~IiIEt~G~l~~~~~---~~~~~~~~i~Vvd~~~~d~~~~----~~~~~~~~a~iiv~NK~Dl~~ 162 (207)
T TIGR00073 93 HALEDLPLDDIDLLFIENVGNLVCPAD---FDLGEHMRVVLLSVTEGDDKPL----KYPGMFKEADLIVINKADLAE 162 (207)
T ss_pred HHHHHhccCCCCEEEEecCCCcCCCcc---cccccCeEEEEEecCcccchhh----hhHhHHhhCCEEEEEHHHccc
Confidence 002468999999993221111 1123466678899986544322 222335678899999999864
No 291
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.16 E-value=6.6e-10 Score=109.54 Aligned_cols=112 Identities=19% Similarity=0.178 Sum_probs=77.6
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEe-e-c--CeeEEEEeCCCCC
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY-W-N--KHRINIIDTPGHV 166 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~-~-~--~~~i~liDTPG~~ 166 (608)
..|+++|..|+|||||+++|....- ... . ..|+........ + . ..++.+|||+|+.
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~--~~~----------------~--~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~ 65 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEF--PEG----------------Y--PPTIGNLDPAKTIEPYRRNIKLQLWDTAGQE 65 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcC--ccc----------------C--CCceeeeeEEEEEEeCCCEEEEEeecCCCHH
Confidence 6899999999999999999972211 100 0 011111111111 1 1 4569999999999
Q ss_pred CchHHHHHHHHhcCeEEEEEcCCC--CCchhHHHHHHHHHhc---CCCEEEEEeCCCcCCC
Q 007325 167 DFTLEVERALRVLDGAICLFDSVA--GVEPQSETVWRQADKY---GVPRICFVNKMDRLGA 222 (608)
Q Consensus 167 df~~~~~~~l~~~D~~i~VvDa~~--g~~~~t~~~~~~~~~~---~~p~ivviNK~D~~~~ 222 (608)
+|...+..+.+.++++++++|... .....++.....+... +.|++++.||+|+...
T Consensus 66 ~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~ 126 (219)
T COG1100 66 EYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDE 126 (219)
T ss_pred HHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccc
Confidence 999999999999999999999985 2333333334444443 5899999999998764
No 292
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=7.8e-10 Score=97.25 Aligned_cols=112 Identities=20% Similarity=0.172 Sum_probs=83.7
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchH
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~ 170 (608)
-.|.++|-.++||||++-.|.. +..... --|+..+.-++++++..+|+||..|+.....
T Consensus 18 ~~ilmlGLd~aGKTtiLyKLkl--~~~~~~-------------------ipTvGFnvetVtykN~kfNvwdvGGqd~iRp 76 (180)
T KOG0071|consen 18 MRILMLGLDAAGKTTILYKLKL--GQSVTT-------------------IPTVGFNVETVTYKNVKFNVWDVGGQDKIRP 76 (180)
T ss_pred ceEEEEecccCCceehhhHHhc--CCCccc-------------------ccccceeEEEEEeeeeEEeeeeccCchhhhH
Confidence 4788999999999999999952 211110 0155666677788999999999999999999
Q ss_pred HHHHHHHhcCeEEEEEcCCCC--CchhHHHHHHHH---HhcCCCEEEEEeCCCcCCCc
Q 007325 171 EVERALRVLDGAICLFDSVAG--VEPQSETVWRQA---DKYGVPRICFVNKMDRLGAN 223 (608)
Q Consensus 171 ~~~~~l~~~D~~i~VvDa~~g--~~~~t~~~~~~~---~~~~~p~ivviNK~D~~~~~ 223 (608)
.+.+++....++|+|+|+.+. ++..-.++.+.+ .-...|+++..||-|++++.
T Consensus 77 lWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~ 134 (180)
T KOG0071|consen 77 LWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAM 134 (180)
T ss_pred HHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccccc
Confidence 999999999999999999854 222222332222 22467888999999998763
No 293
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=5.5e-10 Score=105.56 Aligned_cols=116 Identities=18% Similarity=0.239 Sum_probs=85.0
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchH
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~ 170 (608)
+.|.++|..|+|||+|+-+|.+... . + + -.++..+.+.+..++....+||.|||.+...
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~--~--~------T-----------vtSiepn~a~~r~gs~~~~LVD~PGH~rlR~ 97 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSH--R--G------T-----------VTSIEPNEATYRLGSENVTLVDLPGHSRLRR 97 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCc--c--C------e-----------eeeeccceeeEeecCcceEEEeCCCcHHHHH
Confidence 6899999999999999999973211 1 1 1 1267777778888888899999999999988
Q ss_pred HHHHHHH---hcCeEEEEEcCCCCCc---hhHHHHHHHH-----HhcCCCEEEEEeCCCcCCCcHHHH
Q 007325 171 EVERALR---VLDGAICLFDSVAGVE---PQSETVWRQA-----DKYGVPRICFVNKMDRLGANFFRT 227 (608)
Q Consensus 171 ~~~~~l~---~~D~~i~VvDa~~g~~---~~t~~~~~~~-----~~~~~p~ivviNK~D~~~~~~~~~ 227 (608)
.....+. .+-++|+|||+..-.. ...+.+...+ ....+|++++.||.|+..+...+.
T Consensus 98 kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~ 165 (238)
T KOG0090|consen 98 KLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEK 165 (238)
T ss_pred HHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHH
Confidence 8888877 7899999999985322 2222222222 245678899999999988764443
No 294
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.12 E-value=1.4e-09 Score=116.20 Aligned_cols=82 Identities=22% Similarity=0.259 Sum_probs=53.4
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEe-------------------
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY------------------- 151 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~------------------- 151 (608)
..|+|||.+|+|||||+|+|. +........ + +.|+....+...
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt---~~~~~~~~y-~--------------f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~ 63 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAAT---LADVEIANY-P--------------FTTIDPNVGVAYVRVECPCKELGVKCNPRNG 63 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHh---CCcccccCC-C--------------CcceeeeeeeeeeccCCchhhhhhhhccccc
Confidence 379999999999999999995 221111111 1 112222221111
Q ss_pred --e---cCeeEEEEeCCCCCC-------chHHHHHHHHhcCeEEEEEcCCC
Q 007325 152 --W---NKHRINIIDTPGHVD-------FTLEVERALRVLDGAICLFDSVA 190 (608)
Q Consensus 152 --~---~~~~i~liDTPG~~d-------f~~~~~~~l~~~D~~i~VvDa~~ 190 (608)
+ ....++++||||..+ ........++.+|++++|||+..
T Consensus 64 ~~~~~~~~~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~ 114 (396)
T PRK09602 64 KCIDGTRFIPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDASG 114 (396)
T ss_pred cccCCcceeeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 1 225689999999753 33456677999999999999973
No 295
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.12 E-value=2.3e-10 Score=114.22 Aligned_cols=119 Identities=21% Similarity=0.209 Sum_probs=78.3
Q ss_pred ccCCCCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEee-cCeeEEEEe
Q 007325 83 RVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRINIID 161 (608)
Q Consensus 83 ~~~~~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~i~liD 161 (608)
........+.|++||++|+|||||+++|. .+ .......++. |.+........ .+..+.+.|
T Consensus 171 ~gr~~~s~pviavVGYTNaGKsTLikaLT-~A-al~p~drLFA----------------TLDpT~h~a~Lpsg~~vlltD 232 (410)
T KOG0410|consen 171 VGREGESSPVIAVVGYTNAGKSTLIKALT-KA-ALYPNDRLFA----------------TLDPTLHSAHLPSGNFVLLTD 232 (410)
T ss_pred hccccCCCceEEEEeecCccHHHHHHHHH-hh-hcCccchhhe----------------eccchhhhccCCCCcEEEEee
Confidence 34445567899999999999999999996 11 1221222221 33333333332 467899999
Q ss_pred CCCCCC---------chHHHHHHHHhcCeEEEEEcCCCC-CchhHHHHHHHHHhcCCCE-------EEEEeCCCcC
Q 007325 162 TPGHVD---------FTLEVERALRVLDGAICLFDSVAG-VEPQSETVWRQADKYGVPR-------ICFVNKMDRL 220 (608)
Q Consensus 162 TPG~~d---------f~~~~~~~l~~~D~~i~VvDa~~g-~~~~t~~~~~~~~~~~~p~-------ivviNK~D~~ 220 (608)
|-|+.. |.. +..-...+|.+++|+|.+++ ...|-+.++..+...++|- +=|=||+|..
T Consensus 233 TvGFisdLP~~LvaAF~A-TLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e 307 (410)
T KOG0410|consen 233 TVGFISDLPIQLVAAFQA-TLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYE 307 (410)
T ss_pred chhhhhhCcHHHHHHHHH-HHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccc
Confidence 999865 332 33344567999999999976 4567777888888888762 3344666653
No 296
>PTZ00099 rab6; Provisional
Probab=99.10 E-value=7.8e-10 Score=105.53 Aligned_cols=68 Identities=22% Similarity=0.226 Sum_probs=52.5
Q ss_pred CeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHHHh---cCCCEEEEEeCCCcCC
Q 007325 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 221 (608)
Q Consensus 154 ~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~~~---~~~p~ivviNK~D~~~ 221 (608)
...+.||||||+..|...+..+++.+|++|+|+|.++....+....| ..+.. .++|+++|.||+|+..
T Consensus 28 ~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~ 99 (176)
T PTZ00099 28 PVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGD 99 (176)
T ss_pred EEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc
Confidence 46789999999999999999999999999999999875433333333 22222 3578899999999853
No 297
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=99.10 E-value=8.7e-11 Score=95.27 Aligned_cols=68 Identities=40% Similarity=0.581 Sum_probs=62.9
Q ss_pred ceEEEEEEecceeCCCCEEEe--CCCCce---eecceEEEeecCceeecCeeecCCEEEEcCCCc-ccccceec
Q 007325 404 GSLTFVRVYAGTLSAGSYVLN--ANKGKK---ERIGRLLEMHANSREDVKVALAGDIIALAGLKD-TITGETLC 471 (608)
Q Consensus 404 G~la~~RV~sG~l~~g~~v~~--~~~~~~---~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~-~~~GdtL~ 471 (608)
|+++++||+||+|++||+|++ ..++++ .+|.+|+.+++...++++.+.||+++++.++++ +++|||||
T Consensus 1 G~v~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~i~~Gdtl~ 74 (74)
T PF03144_consen 1 GRVATGRVYSGTLKKGDKVRVLPNGTGKKGQVVKIKSIFMFNGDVQEAVAGANAGDIVAIIGLNDAIRRGDTLT 74 (74)
T ss_dssp EEEEEEEEEESEEETTEEEEEESTTTTEECEEEEEEEEEETTEEESEEETTEEEEEEEESSSGCSCSSTTEEEE
T ss_pred CEEEEEEEEEeEEcCCCEEEECccCCcceeeeeecccccccccCccEeCCceeeEEEEEEcCCCCCcCcCCEEC
Confidence 789999999999999999999 545555 899999999999999999999999999999999 79999996
No 298
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.07 E-value=1.8e-09 Score=112.47 Aligned_cols=151 Identities=15% Similarity=0.176 Sum_probs=94.3
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcc---eeEeecE-----EEEee---cCeeEEE
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERG---ITITSAA-----TTTYW---NKHRINI 159 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g---iTi~~~~-----~~~~~---~~~~i~l 159 (608)
..|+++|+.++|||||+|+|....- +..+.......+..|-.+. ...| +|.++.. ..+.. -...+.+
T Consensus 18 IyIGvvGpvrtGKSTfIn~fm~q~V-lP~i~~~~~k~Ra~DELpq-s~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 18 IYIGVVGPVRTGKSTFIKKFMELLV-LPNISNEYDKERAQDELPQ-SAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred EEEEEEcCCCCChHHHHHHHHhhhc-cccccchhHHhHHHhccCc-CCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 5899999999999999999974411 0000000000011111111 1122 2333332 11111 1367999
Q ss_pred EeCCCCCC-------------------------chHH----HHHHHH-hcCeEEEEE-cCC------CCCchhHHHHHHH
Q 007325 160 IDTPGHVD-------------------------FTLE----VERALR-VLDGAICLF-DSV------AGVEPQSETVWRQ 202 (608)
Q Consensus 160 iDTPG~~d-------------------------f~~~----~~~~l~-~~D~~i~Vv-Da~------~g~~~~t~~~~~~ 202 (608)
|||+|+.+ |... +...+. .+|.+|+|. |++ +......+.++..
T Consensus 96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e 175 (492)
T TIGR02836 96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE 175 (492)
T ss_pred EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence 99999865 1111 445566 789999999 886 5566777888999
Q ss_pred HHhcCCCEEEEEeCCCcCCCcHHHHHHHHHHhhCCccEEEe
Q 007325 203 ADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQ 243 (608)
Q Consensus 203 ~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ 243 (608)
+++.++|+++++||.|-...+-....+++.+.++..++++.
T Consensus 176 Lk~~~kPfiivlN~~dp~~~et~~l~~~l~eky~vpvl~v~ 216 (492)
T TIGR02836 176 LKELNKPFIILLNSTHPYHPETEALRQELEEKYDVPVLAMD 216 (492)
T ss_pred HHhcCCCEEEEEECcCCCCchhHHHHHHHHHHhCCceEEEE
Confidence 99999999999999995444445566788888886555443
No 299
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.05 E-value=2.4e-09 Score=103.65 Aligned_cols=115 Identities=19% Similarity=0.143 Sum_probs=78.3
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCch
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~ 169 (608)
..+|+++|.+|+|||+|+-+++.... ..+|.+.- + +.......+.-....+.|+||+|..+|.
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f-------------~~~y~pti-e---d~y~k~~~v~~~~~~l~ilDt~g~~~~~ 65 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRF-------------VEDYDPTI-E---DSYRKELTVDGEVCMLEILDTAGQEEFS 65 (196)
T ss_pred ceEEEEECCCCCCcchheeeeccccc-------------ccccCCCc-c---ccceEEEEECCEEEEEEEEcCCCcccCh
Confidence 35899999999999999999973221 11111100 0 1111112222234567799999999999
Q ss_pred HHHHHHHHhcCeEEEEEcCCCCCchhHHH-HHHHH----HhcCCCEEEEEeCCCcCC
Q 007325 170 LEVERALRVLDGAICLFDSVAGVEPQSET-VWRQA----DKYGVPRICFVNKMDRLG 221 (608)
Q Consensus 170 ~~~~~~l~~~D~~i~VvDa~~g~~~~t~~-~~~~~----~~~~~p~ivviNK~D~~~ 221 (608)
.....+++..|+.++|++.++....+... ++.++ ....+|+++|.||+|+..
T Consensus 66 ~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~ 122 (196)
T KOG0395|consen 66 AMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLER 122 (196)
T ss_pred HHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchh
Confidence 99999999999999999999755443333 23333 234689999999999865
No 300
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.04 E-value=1.3e-09 Score=95.93 Aligned_cols=114 Identities=23% Similarity=0.222 Sum_probs=80.4
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC-eeEEEEeCCCCC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK-HRINIIDTPGHV 166 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~-~~i~liDTPG~~ 166 (608)
.+-..|.++|--|+||||++..|- +.. ....-. |-..+...+.+.+ .++|+||..|+.
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~---sED--------------~~hltp----T~GFn~k~v~~~g~f~LnvwDiGGqr 73 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLK---SED--------------PRHLTP----TNGFNTKKVEYDGTFHLNVWDIGGQR 73 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHc---cCC--------------hhhccc----cCCcceEEEeecCcEEEEEEecCCcc
Confidence 334578999999999999999993 110 000001 2233344555555 899999999999
Q ss_pred CchHHHHHHHHhcCeEEEEEcCCCCC--chhHH---HHHHHHHhcCCCEEEEEeCCCcCCC
Q 007325 167 DFTLEVERALRVLDGAICLFDSVAGV--EPQSE---TVWRQADKYGVPRICFVNKMDRLGA 222 (608)
Q Consensus 167 df~~~~~~~l~~~D~~i~VvDa~~g~--~~~t~---~~~~~~~~~~~p~ivviNK~D~~~~ 222 (608)
....-+..++...|++|+|||+++.- ....+ ++++..+...+|+.++.||.|+..+
T Consensus 74 ~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdllta 134 (185)
T KOG0074|consen 74 GIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTA 134 (185)
T ss_pred ccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhh
Confidence 99999999999999999999988532 11222 2233334457899999999998754
No 301
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.04 E-value=2.1e-09 Score=106.89 Aligned_cols=136 Identities=15% Similarity=0.163 Sum_probs=85.0
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhh------CCccc-ceee--------------ccCCccccchhhh------hh--
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYT------GRNYK-IGEV--------------HEGTATMDWMEQE------QE-- 138 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~------g~~~~-~g~~--------------~~g~~~~d~~~~e------~~-- 138 (608)
-..|.|+++|..++||||++++|.... |...+ .-.+ ..+....|..... .+
T Consensus 24 i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 103 (240)
T smart00053 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRV 103 (240)
T ss_pred CCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHh
Confidence 356899999999999999999997331 11110 0000 0011111221111 10
Q ss_pred --cceeEeecEEEEee---cCeeEEEEeCCCCCCc-------------hHHHHHHHH-hcCeEEEEEcCCCCCchhH-HH
Q 007325 139 --RGITITSAATTTYW---NKHRINIIDTPGHVDF-------------TLEVERALR-VLDGAICLFDSVAGVEPQS-ET 198 (608)
Q Consensus 139 --~giTi~~~~~~~~~---~~~~i~liDTPG~~df-------------~~~~~~~l~-~~D~~i~VvDa~~g~~~~t-~~ 198 (608)
.+-.+......++. .-..++||||||+.+. ...+..+++ ..+.+++|+|+..++..+. .+
T Consensus 104 ~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ 183 (240)
T smart00053 104 TGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALK 183 (240)
T ss_pred cCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHH
Confidence 01122222333333 2357999999998632 123555677 4468999999998888777 57
Q ss_pred HHHHHHhcCCCEEEEEeCCCcCCCc
Q 007325 199 VWRQADKYGVPRICFVNKMDRLGAN 223 (608)
Q Consensus 199 ~~~~~~~~~~p~ivviNK~D~~~~~ 223 (608)
+.+.+...+.|.++|+||+|.....
T Consensus 184 ia~~ld~~~~rti~ViTK~D~~~~~ 208 (240)
T smart00053 184 LAKEVDPQGERTIGVITKLDLMDEG 208 (240)
T ss_pred HHHHHHHcCCcEEEEEECCCCCCcc
Confidence 8888888999999999999987643
No 302
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=5.2e-10 Score=98.82 Aligned_cols=113 Identities=23% Similarity=0.173 Sum_probs=81.7
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCc
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 168 (608)
+--.|.++|-.|+||||++-++- . |++.. ..-|+..+..++.+++.++++||.-|+...
T Consensus 17 ~e~rililgldGaGkttIlyrlq--v------gevvt-------------tkPtigfnve~v~yKNLk~~vwdLggqtSi 75 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQ--V------GEVVT-------------TKPTIGFNVETVPYKNLKFQVWDLGGQTSI 75 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcc--c------Ccccc-------------cCCCCCcCccccccccccceeeEccCcccc
Confidence 34578899999999999887773 1 11110 011666677778889999999999999999
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCCC--chhHHHHHHHHH---hcCCCEEEEEeCCCcCCC
Q 007325 169 TLEVERALRVLDGAICLFDSVAGV--EPQSETVWRQAD---KYGVPRICFVNKMDRLGA 222 (608)
Q Consensus 169 ~~~~~~~l~~~D~~i~VvDa~~g~--~~~t~~~~~~~~---~~~~p~ivviNK~D~~~~ 222 (608)
..-+..++...|.+|+|||+++-- ...-.++..++. -.+...++|.||+|...+
T Consensus 76 rPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~ 134 (182)
T KOG0072|consen 76 RPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGA 134 (182)
T ss_pred cHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhh
Confidence 999999999999999999998632 222223333332 235567788999997643
No 303
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.01 E-value=6.6e-09 Score=104.40 Aligned_cols=117 Identities=16% Similarity=0.252 Sum_probs=68.8
Q ss_pred CCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCC
Q 007325 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (608)
Q Consensus 87 ~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 166 (608)
.....+|+++|.+|+|||||+|+|+..... ..+ ++ .+.|.........+++..+++|||||+.
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~--~v~---------~~------~~~T~~~~~~~~~~~g~~i~vIDTPGl~ 90 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKA--ATS---------AF------QSETLRVREVSGTVDGFKLNIIDTPGLL 90 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCc--ccC---------CC------CCceEEEEEEEEEECCeEEEEEECCCcC
Confidence 344579999999999999999999732111 011 11 1235555555667788999999999998
Q ss_pred CchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCCcH--HHHHHHHHHhhCC
Q 007325 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANF--FRTRDMIVTNLGA 237 (608)
Q Consensus 167 df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~~--~~~~~~i~~~l~~ 237 (608)
+........ ......+.+.+...++++++++||+|....+. ..+++.|++.||.
T Consensus 91 ~~~~~~~~~-----------------~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~ 146 (249)
T cd01853 91 ESVMDQRVN-----------------RKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGP 146 (249)
T ss_pred cchhhHHHH-----------------HHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhCh
Confidence 763211000 00011222333444566666677777544332 2566666666653
No 304
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.99 E-value=1.9e-09 Score=93.22 Aligned_cols=98 Identities=21% Similarity=0.159 Sum_probs=64.5
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCC----CC
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG----HV 166 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG----~~ 166 (608)
+++++||.+|+|||||+++|..+. +.....-.++|++ =..||||| |.
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~---------------------------~lykKTQAve~~d--~~~IDTPGEy~~~~ 52 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGND---------------------------TLYKKTQAVEFND--KGDIDTPGEYFEHP 52 (148)
T ss_pred ceeEEecccccCchhHHHHhhcch---------------------------hhhcccceeeccC--ccccCCchhhhhhh
Confidence 579999999999999999994111 1111111223322 24799999 33
Q ss_pred CchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcC
Q 007325 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (608)
Q Consensus 167 df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~ 220 (608)
.+..........+|.+++|-.++++.+.-. -..+.-...|+|-+++|+|+.
T Consensus 53 ~~Y~aL~tt~~dadvi~~v~~and~~s~f~---p~f~~~~~k~vIgvVTK~DLa 103 (148)
T COG4917 53 RWYHALITTLQDADVIIYVHAANDPESRFP---PGFLDIGVKKVIGVVTKADLA 103 (148)
T ss_pred HHHHHHHHHhhccceeeeeecccCccccCC---cccccccccceEEEEeccccc
Confidence 344445666778899999998887643221 122334567899999999997
No 305
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.97 E-value=2.9e-09 Score=105.00 Aligned_cols=125 Identities=27% Similarity=0.284 Sum_probs=69.4
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHh---hCCcccceeecc------CCccccchh---hhhhcceeEeecEEEEee----
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFY---TGRNYKIGEVHE------GTATMDWME---QEQERGITITSAATTTYW---- 152 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~---~g~~~~~g~~~~------g~~~~d~~~---~e~~~giTi~~~~~~~~~---- 152 (608)
+...|+|.|.+|+|||||+++|... .|.....-.+++ |+-.-|... .....++-+.+....=..
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 4579999999999999999999733 222211112222 222233322 223345544443322111
Q ss_pred ------------cCeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHH--HHHHHHHhcCCCEEEEEeCCC
Q 007325 153 ------------NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSE--TVWRQADKYGVPRICFVNKMD 218 (608)
Q Consensus 153 ------------~~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~--~~~~~~~~~~~p~ivviNK~D 218 (608)
-++.+.||.|.|... +++ .....+|.+++|+-...|-.-|.. -+++. .-++|+||.|
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQ--sE~-~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi------aDi~vVNKaD 178 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQ--SEV-DIADMADTVVLVLVPGLGDEIQAIKAGIMEI------ADIFVVNKAD 178 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSST--HHH-HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-------SEEEEE--S
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCc--cHH-HHHHhcCeEEEEecCCCccHHHHHhhhhhhh------ccEEEEeCCC
Confidence 479999999999765 333 236778999999987755544433 23333 4499999999
Q ss_pred cCCC
Q 007325 219 RLGA 222 (608)
Q Consensus 219 ~~~~ 222 (608)
+..+
T Consensus 179 ~~gA 182 (266)
T PF03308_consen 179 RPGA 182 (266)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 7654
No 306
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=98.96 E-value=1.4e-08 Score=91.78 Aligned_cols=113 Identities=16% Similarity=0.237 Sum_probs=77.1
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchh--hhhhcceeEeecEEEEeecCeeEEEEeCCCCCCch
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWME--QEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~--~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~ 169 (608)
.+.+||.+-+|||+|+..+. .|..... .+.+--.|+.. .|-++|. ..++.||||.|+.+|.
T Consensus 10 rlivigdstvgkssll~~ft--~gkfael---sdptvgvdffarlie~~pg~------------riklqlwdtagqerfr 72 (213)
T KOG0091|consen 10 RLIVIGDSTVGKSSLLRYFT--EGKFAEL---SDPTVGVDFFARLIELRPGY------------RIKLQLWDTAGQERFR 72 (213)
T ss_pred EEEEEcCCcccHHHHHHHHh--cCccccc---CCCccchHHHHHHHhcCCCc------------EEEEEEeeccchHHHH
Confidence 56799999999999999986 3332222 22222233332 3334443 2468999999999999
Q ss_pred HHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcC------CCEEEEEeCCCcCC
Q 007325 170 LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYG------VPRICFVNKMDRLG 221 (608)
Q Consensus 170 ~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~------~p~ivviNK~D~~~ 221 (608)
+.+.++++.+=++++|.|.++--.....+.|-.-.++. +-+++|..|.|+..
T Consensus 73 sitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~S 130 (213)
T KOG0091|consen 73 SITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQS 130 (213)
T ss_pred HHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhh
Confidence 99999999999999999999755544445553322222 22467789999864
No 307
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.95 E-value=1.9e-08 Score=104.33 Aligned_cols=128 Identities=21% Similarity=0.173 Sum_probs=70.3
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhh---CCcccceeeccCCc-----cc-cchhh-h--hhcceeEeecEEE------
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYT---GRNYKIGEVHEGTA-----TM-DWMEQ-E--QERGITITSAATT------ 149 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~---g~~~~~g~~~~g~~-----~~-d~~~~-e--~~~giTi~~~~~~------ 149 (608)
.....|+|+|.+|+|||||++.|.... |.....-..+.... .. |.... + ...+.-+......
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGAFIRSMPTRGHLGGL 111 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCceeeecCccccccch
Confidence 456899999999999999999987432 21111111122111 11 11000 0 0111111111110
Q ss_pred ----------EeecCeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCc
Q 007325 150 ----------TYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDR 219 (608)
Q Consensus 150 ----------~~~~~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~ 219 (608)
+...++.+.||||||...- ....+..+|.++++.+...+..-+ ..... ..++|.++|+||+|+
T Consensus 112 ~~~~~~~~~~l~~~g~D~viidT~G~~~~---e~~i~~~aD~i~vv~~~~~~~el~--~~~~~--l~~~~~ivv~NK~Dl 184 (300)
T TIGR00750 112 SQATRELILLLDAAGYDVIIVETVGVGQS---EVDIANMADTFVVVTIPGTGDDLQ--GIKAG--LMEIADIYVVNKADG 184 (300)
T ss_pred hHHHHHHHHHHHhCCCCEEEEeCCCCchh---hhHHHHhhceEEEEecCCccHHHH--HHHHH--HhhhccEEEEEcccc
Confidence 1125789999999997532 223567789999886554332211 11111 246889999999998
Q ss_pred CCC
Q 007325 220 LGA 222 (608)
Q Consensus 220 ~~~ 222 (608)
...
T Consensus 185 ~~~ 187 (300)
T TIGR00750 185 EGA 187 (300)
T ss_pred cch
Confidence 754
No 308
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=98.95 E-value=5.4e-10 Score=97.17 Aligned_cols=112 Identities=21% Similarity=0.227 Sum_probs=78.2
Q ss_pred EEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchHHHHH
Q 007325 95 IMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVER 174 (608)
Q Consensus 95 ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~ 174 (608)
++|.+++|||.|+-++- .| ..-.|++.+ ..||........+.-...++.+|||.|+.+|.+-+..
T Consensus 2 llgds~~gktcllir~k--dg------afl~~~fis-------tvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~a 66 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFK--DG------AFLAGNFIS-------TVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHA 66 (192)
T ss_pred ccccCccCceEEEEEec--cC------ceecCceee-------eeeeccccceeccCCcEEEEEEeeccchHHHhhhhHh
Confidence 68999999999986652 22 111222211 1244444444455445678999999999999999999
Q ss_pred HHHhcCeEEEEEcCCCCCchhHHHHH-HHHHh---cCCCEEEEEeCCCcCC
Q 007325 175 ALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 221 (608)
Q Consensus 175 ~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~~~---~~~p~ivviNK~D~~~ 221 (608)
+++.+|..+++.|..+.........| .+..+ ..+...++.||+|+..
T Consensus 67 yyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~ 117 (192)
T KOG0083|consen 67 YYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAH 117 (192)
T ss_pred hhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccch
Confidence 99999999999999876655554444 33333 3566788999999854
No 309
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.90 E-value=9e-08 Score=100.35 Aligned_cols=81 Identities=16% Similarity=0.164 Sum_probs=57.3
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC----------------
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK---------------- 154 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~---------------- 154 (608)
..|+|||.+|+|||||+|+|. +.....+. -+++|++...+.+.+.+
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt---~~~~~v~n---------------ypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~ 64 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALT---KAGAEAAN---------------YPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIV 64 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHh---CCCCeecc---------------cccccccceEEEEEeccccchhhHHhcCCcccc
Confidence 479999999999999999995 32222211 13345555555444433
Q ss_pred -eeEEEEeCCCCCC-------chHHHHHHHHhcCeEEEEEcCC
Q 007325 155 -HRINIIDTPGHVD-------FTLEVERALRVLDGAICLFDSV 189 (608)
Q Consensus 155 -~~i~liDTPG~~d-------f~~~~~~~l~~~D~~i~VvDa~ 189 (608)
.++.++||||..+ ........++.+|++++|||+.
T Consensus 65 ~a~i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 65 PATIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred CceEEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 3599999999765 2345667789999999999995
No 310
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=1.4e-08 Score=89.26 Aligned_cols=119 Identities=16% Similarity=0.112 Sum_probs=79.0
Q ss_pred CCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCC
Q 007325 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (608)
Q Consensus 87 ~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 166 (608)
-+-+-.-.|+|.-|+|||.|+..+....-...-... -|+......+.+.-...++.+|||.|+.
T Consensus 8 ysyifkyiiigdmgvgkscllhqftekkfmadcpht----------------igvefgtriievsgqkiklqiwdtagqe 71 (215)
T KOG0097|consen 8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHT----------------IGVEFGTRIIEVSGQKIKLQIWDTAGQE 71 (215)
T ss_pred hhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcc----------------cceecceeEEEecCcEEEEEEeecccHH
Confidence 345677889999999999999999643221111110 1122222222333345678999999999
Q ss_pred CchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHH-HHHhc---CCCEEEEEeCCCcCC
Q 007325 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWR-QADKY---GVPRICFVNKMDRLG 221 (608)
Q Consensus 167 df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~-~~~~~---~~p~ivviNK~D~~~ 221 (608)
+|..-+..+++.+-++++|.|.+..........|. .++.. +.-++++.||.|+..
T Consensus 72 rfravtrsyyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~ 130 (215)
T KOG0097|consen 72 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLES 130 (215)
T ss_pred HHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhh
Confidence 99999999999999999999998654444444442 22322 334567789999854
No 311
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.88 E-value=3.6e-08 Score=98.48 Aligned_cols=126 Identities=23% Similarity=0.238 Sum_probs=73.0
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHh---hCCcccceeeccCC-----c-cccchhhh---hhcceeEeecEEEEe-----
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFY---TGRNYKIGEVHEGT-----A-TMDWMEQE---QERGITITSAATTTY----- 151 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~---~g~~~~~g~~~~g~-----~-~~d~~~~e---~~~giTi~~~~~~~~----- 151 (608)
+-..|+|.|.||+|||||+++|... .|.....-.+++.+ + .-|...-. ...++-+.+....=.
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS 129 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLS 129 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhh
Confidence 3468999999999999999999632 22222222233221 1 12221111 112222222211111
Q ss_pred -----------ecCeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHH--HHHHHHhcCCCEEEEEeCCC
Q 007325 152 -----------WNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSET--VWRQADKYGVPRICFVNKMD 218 (608)
Q Consensus 152 -----------~~~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~--~~~~~~~~~~p~ivviNK~D 218 (608)
--++.+.||.|.|...--.+ ....+|..++|.=+.-|-..|... +++.+ -|+|+||+|
T Consensus 130 ~at~~~i~~ldAaG~DvIIVETVGvGQsev~---I~~~aDt~~~v~~pg~GD~~Q~iK~GimEia------Di~vINKaD 200 (323)
T COG1703 130 RATREAIKLLDAAGYDVIIVETVGVGQSEVD---IANMADTFLVVMIPGAGDDLQGIKAGIMEIA------DIIVINKAD 200 (323)
T ss_pred HHHHHHHHHHHhcCCCEEEEEecCCCcchhH---HhhhcceEEEEecCCCCcHHHHHHhhhhhhh------heeeEeccC
Confidence 14789999999997653222 345679999988777666666543 33333 389999999
Q ss_pred cCCCc
Q 007325 219 RLGAN 223 (608)
Q Consensus 219 ~~~~~ 223 (608)
+.+++
T Consensus 201 ~~~A~ 205 (323)
T COG1703 201 RKGAE 205 (323)
T ss_pred hhhHH
Confidence 76653
No 312
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=98.85 E-value=1.5e-08 Score=82.68 Aligned_cols=78 Identities=31% Similarity=0.428 Sum_probs=67.3
Q ss_pred eEEEEEEeeecCCCceEEEEEEecceeCCCCEEEeCC--CCceeecceEEEeecCceeecCeeecCCEEEEcCCCc--cc
Q 007325 390 FAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNAN--KGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKD--TI 465 (608)
Q Consensus 390 ~~~~V~K~~~d~~~G~la~~RV~sG~l~~g~~v~~~~--~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~--~~ 465 (608)
+.++|++++.+++.|+++++||++|+|++||.+++.+ .....+|..|+... .+++++.|||++++...+. ++
T Consensus 1 ~~~~v~~~~~~~~~g~v~~~rv~~G~l~~g~~v~~~~~~~~~~~~i~~i~~~~----~~~~~~~aG~~~~~~~~~~~~~~ 76 (83)
T cd01342 1 LRALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPGGGGVKGKVKSLKRFK----GEVDEAVAGDIVGIVLKDKDDIK 76 (83)
T ss_pred CeeEEEEEEEeCCceEEEEEEEeeCEEecCCEEEEecCCceeEEEEeEeEecC----ceeceecCCCEEEEEEccccccC
Confidence 3578999999999999999999999999999999887 66678888887665 6788999999999977654 88
Q ss_pred ccceec
Q 007325 466 TGETLC 471 (608)
Q Consensus 466 ~GdtL~ 471 (608)
+||+++
T Consensus 77 ~g~~l~ 82 (83)
T cd01342 77 IGDTLT 82 (83)
T ss_pred CCCEec
Confidence 899875
No 313
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.85 E-value=5.3e-08 Score=94.72 Aligned_cols=61 Identities=16% Similarity=0.152 Sum_probs=36.7
Q ss_pred CeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCC
Q 007325 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (608)
Q Consensus 154 ~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~ 221 (608)
+....+|+|.|..- ..... -..+|.+|+|+|+.++...+.. . .......-++++||+|+..
T Consensus 91 ~~D~iiIEt~G~~l-~~~~~--~~l~~~~i~vvD~~~~~~~~~~-~---~~qi~~ad~~~~~k~d~~~ 151 (199)
T TIGR00101 91 PLEMVFIESGGDNL-SATFS--PELADLTIFVIDVAAGDKIPRK-G---GPGITRSDLLVINKIDLAP 151 (199)
T ss_pred CCCEEEEECCCCCc-ccccc--hhhhCcEEEEEEcchhhhhhhh-h---HhHhhhccEEEEEhhhccc
Confidence 45788999999321 11111 1236899999999976553221 0 1111223389999999864
No 314
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.84 E-value=9.1e-09 Score=97.00 Aligned_cols=64 Identities=23% Similarity=0.242 Sum_probs=47.4
Q ss_pred CeeEEEEeCCCCCCc----hHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHH-HhcCCCEEEEEeCC
Q 007325 154 KHRINIIDTPGHVDF----TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQA-DKYGVPRICFVNKM 217 (608)
Q Consensus 154 ~~~i~liDTPG~~df----~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~-~~~~~p~ivviNK~ 217 (608)
...+.|+||||..+. ...+..++..+|++|+|+++...........+... ....-..++|+||+
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred ccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 456999999998552 35578888999999999999987776665555544 44555678888985
No 315
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.82 E-value=3.9e-08 Score=97.29 Aligned_cols=115 Identities=20% Similarity=0.250 Sum_probs=72.9
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEee-cCeeEEEEeCCCCCCchH
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPGHVDFTL 170 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPG~~df~~ 170 (608)
+|.++|..++||||..+.+..+... ... ..-|.|++.....+.. ....+++||+||+.+|..
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p-~dT----------------~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~ 63 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSP-RDT----------------LRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFME 63 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---G-GGG----------------GG-----SEEEEEEECTTSCEEEEEEE-SSCSTTH
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCc-hhc----------------cccCCcCCceEEEEecCCCcEEEEEEcCCcccccc
Confidence 4789999999999999998622110 000 1123466666666654 455999999999998765
Q ss_pred H-----HHHHHHhcCeEEEEEcCC-CCCchhHH---HHHHHHHh--cCCCEEEEEeCCCcCCCc
Q 007325 171 E-----VERALRVLDGAICLFDSV-AGVEPQSE---TVWRQADK--YGVPRICFVNKMDRLGAN 223 (608)
Q Consensus 171 ~-----~~~~l~~~D~~i~VvDa~-~g~~~~t~---~~~~~~~~--~~~p~ivviNK~D~~~~~ 223 (608)
. ....++.++++|+|+|+. +....... ..++.+.+ .++.+.+++.|||+...+
T Consensus 64 ~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~ 127 (232)
T PF04670_consen 64 NYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSED 127 (232)
T ss_dssp TTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HH
T ss_pred ccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHH
Confidence 4 466789999999999999 33322222 23333433 467788999999998755
No 316
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.82 E-value=1.2e-07 Score=96.96 Aligned_cols=116 Identities=15% Similarity=0.148 Sum_probs=70.7
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 167 (608)
.+..+|+++|.+|+||||++|+|+..... ... ++ .+.+.........+++.++++|||||..+
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~--~vs---------~f------~s~t~~~~~~~~~~~G~~l~VIDTPGL~d 98 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIA--TVS---------AF------QSEGLRPMMVSRTRAGFTLNIIDTPGLIE 98 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcc--ccc---------CC------CCcceeEEEEEEEECCeEEEEEECCCCCc
Confidence 34579999999999999999999722110 000 00 01122222334456889999999999987
Q ss_pred chH---HHHHHHH------hcCeEEEEEcCCC-CCchhHHHHHHHHHh-----cCCCEEEEEeCCCcC
Q 007325 168 FTL---EVERALR------VLDGAICLFDSVA-GVEPQSETVWRQADK-----YGVPRICFVNKMDRL 220 (608)
Q Consensus 168 f~~---~~~~~l~------~~D~~i~VvDa~~-g~~~~t~~~~~~~~~-----~~~p~ivviNK~D~~ 220 (608)
... +....++ ..|++++|.+... .....+..+++.+.. .-.+.|+++++.|..
T Consensus 99 ~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 99 GGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS 166 (313)
T ss_pred hHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence 522 2223333 3688999954332 234344445544432 125789999999965
No 317
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=1.4e-08 Score=91.08 Aligned_cols=68 Identities=19% Similarity=0.175 Sum_probs=51.4
Q ss_pred eeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHHHh----cCCCEEEEEeCCCcCCC
Q 007325 155 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK----YGVPRICFVNKMDRLGA 222 (608)
Q Consensus 155 ~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~~~----~~~p~ivviNK~D~~~~ 222 (608)
..+.+|||.|+++|.+.+....+.+=+.++++|-+.....-...-| .++.. .+--++++.||+|+.+.
T Consensus 67 ihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~ 139 (219)
T KOG0081|consen 67 IHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQ 139 (219)
T ss_pred EEEeeeccccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhh
Confidence 4688999999999999999999999999999999865443333333 34332 34456778899998653
No 318
>cd01684 Tet_like_IV EF-G_domain IV_RPP domain is a part of bacterial ribosomal protected proteins (RPP) family. RPPs such as tetracycline resistance proteins Tet(M) and Tet(O) mediate tetracycline resistance in both gram-positive and -negative species. Tetracyclines inhibit the accommodation of aminoacyl-tRNA into ribosomal A site and therefore prevent the addition of new amino acids to the growing polypeptide. RPPs Tet(M) confer tetracycline resistance by releasing tetracycline from the ribosome and thereby freeing the ribosome from inhibitory effects of the drug, such that aa-tRNA can bind to the A site and protein synthesis can continue.
Probab=98.80 E-value=6.9e-09 Score=91.67 Aligned_cols=44 Identities=20% Similarity=0.183 Sum_probs=37.9
Q ss_pred EEEEEeeecceeEEEEEeeecCCCCeeEEEEEEEEecCCCCcceee
Q 007325 561 VNYRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEVQCQKNIF 606 (608)
Q Consensus 561 V~yrETi~~~~~~~~~~~kq~gg~gq~~~v~~~~ePl~~g~g~~~~ 606 (608)
|+|||||+++++. .+.++++|+||||+|+++++|+++|+|++|.
T Consensus 1 VaYRETI~~~~~~--~~~~~~~~~~~~a~v~l~veP~~~g~g~~f~ 44 (115)
T cd01684 1 VIYKERPLGTGEG--VEHIEVPPNPFWATVGLRVEPLPRGSGLQYE 44 (115)
T ss_pred CceEEEeCCcEEE--EEEEccCCCcEEEEEEEEEEECCCCCCcEEE
Confidence 6899999999773 4555666899999999999999999999885
No 319
>cd01693 mtEFG2_like_IV mtEF-G2 domain IV. This subfamily is a part the of mitochondrial transcriptional elongation factor, mtEF-G2. Mitochondrial translation is crucial for maintaining mitochondrial function and mutations in this system lead to a breakdown in the respiratory chain-oxidative phosphorylation system and to impaired maintenance of mitochondrial DNA. In complex with GTP, EF-G promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome.
Probab=98.78 E-value=4.5e-09 Score=93.69 Aligned_cols=41 Identities=20% Similarity=0.335 Sum_probs=39.2
Q ss_pred EEEEEeeecceeEEEEEeeecCCCCeeEEEEEEEEecCCCC
Q 007325 561 VNYRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEVQC 601 (608)
Q Consensus 561 V~yrETi~~~~~~~~~~~kq~gg~gq~~~v~~~~ePl~~g~ 601 (608)
|+|||||.++++..++|+||+||.+|||+|+|+++|+++|.
T Consensus 1 V~YREti~~~~~~~~~~~~~~gg~~~~a~v~l~veP~~~~~ 41 (120)
T cd01693 1 IAYRETILEPARATDTLEKVIGDKKHSVTVTMEVRPNQASS 41 (120)
T ss_pred CCcccccCCcccCceEEEEeeCCCCeEEEEEEEEEECCCCC
Confidence 68999999999888999999999999999999999999987
No 320
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.78 E-value=4.2e-08 Score=99.59 Aligned_cols=131 Identities=13% Similarity=0.207 Sum_probs=68.5
Q ss_pred ccCCCCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeec-cCCccccchhhhhhcc---eeEeecEEEEe-------
Q 007325 83 RVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVH-EGTATMDWMEQEQERG---ITITSAATTTY------- 151 (608)
Q Consensus 83 ~~~~~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~-~g~~~~d~~~~e~~~g---iTi~~~~~~~~------- 151 (608)
.......+..|.|+|.+|+|||||+++++.........+-+. +-.+..|.... +..| +.+.....+..
T Consensus 97 ~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~t~~Da~rI-~~~g~pvvqi~tG~~Chl~a~mv~~ 175 (290)
T PRK10463 97 ARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAARI-RATGTPAIQVNTGKGCHLDAQMIAD 175 (290)
T ss_pred HHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCcCcHHHHHHH-HhcCCcEEEecCCCCCcCcHHHHHH
Confidence 334456689999999999999999999985532222222221 11111232221 1112 22222211111
Q ss_pred ------ecCeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCC
Q 007325 152 ------WNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (608)
Q Consensus 152 ------~~~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~ 221 (608)
..+..+.||++.|..-..... -+.. +.-+.|++..+|..... +.-.....+-++++||+|+..
T Consensus 176 Al~~L~~~~~d~liIEnvGnLvcPa~f--dlge-~~~v~vlsV~eg~dkpl----Kyp~~f~~ADIVVLNKiDLl~ 244 (290)
T PRK10463 176 AAPRLPLDDNGILFIENVGNLVCPASF--DLGE-KHKVAVLSVTEGEDKPL----KYPHMFAAASLMLLNKVDLLP 244 (290)
T ss_pred HHHHHhhcCCcEEEEECCCCccCCCcc--chhh-ceeEEEEECccccccch----hccchhhcCcEEEEEhHHcCc
Confidence 134578899999952111110 1111 33457778887643111 111234567799999999864
No 321
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=98.76 E-value=7.8e-08 Score=81.25 Aligned_cols=85 Identities=22% Similarity=0.290 Sum_probs=72.5
Q ss_pred CCCeEEEEEEeeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCeeecCCEEEE--cCCC--
Q 007325 387 DEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK-- 462 (608)
Q Consensus 387 ~~p~~~~V~K~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~-- 462 (608)
+.||.+.|..++..++.|.+..+||.+|+++.||+|++.+.+...+|.+|... ..++++|.|||.++| .+++
T Consensus 2 ~~p~r~~V~~vf~~~g~g~vv~G~v~~G~i~~gd~v~i~P~~~~~~V~sI~~~----~~~~~~a~aG~~v~i~l~~i~~~ 77 (91)
T cd03693 2 DKPLRLPIQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGVTGEVKSVEMH----HEPLEEALPGDNVGFNVKNVSKK 77 (91)
T ss_pred CCCeEEEEEEEEEeCCceEEEEEEEecceeecCCEEEECCCCcEEEEEEEEEC----CcCcCEECCCCEEEEEECCCCHH
Confidence 46899999999988888999999999999999999999998888889888633 367899999999998 4443
Q ss_pred cccccceeccCCC
Q 007325 463 DTITGETLCDADH 475 (608)
Q Consensus 463 ~~~~GdtL~~~~~ 475 (608)
++..|+.||+++.
T Consensus 78 ~v~~G~vl~~~~~ 90 (91)
T cd03693 78 DIKRGDVAGDSKN 90 (91)
T ss_pred HcCCcCEEccCCC
Confidence 3789999998643
No 322
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.74 E-value=1.3e-08 Score=93.18 Aligned_cols=119 Identities=18% Similarity=0.262 Sum_probs=81.1
Q ss_pred CCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCC
Q 007325 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (608)
Q Consensus 87 ~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 166 (608)
.+....++|+|..++||||++.+++ .|...+--. .+...|+.+. .+ .+...+.++.+|||.|+.
T Consensus 17 ~e~aiK~vivGng~VGKssmiqryC--kgifTkdyk---ktIgvdfler----qi-------~v~~Edvr~mlWdtagqe 80 (246)
T KOG4252|consen 17 YERAIKFVIVGNGSVGKSSMIQRYC--KGIFTKDYK---KTIGVDFLER----QI-------KVLIEDVRSMLWDTAGQE 80 (246)
T ss_pred hhhhEEEEEECCCccchHHHHHHHh--ccccccccc---cccchhhhhH----HH-------HhhHHHHHHHHHHhccch
Confidence 3456789999999999999999997 332221111 0111122211 11 112245678899999999
Q ss_pred CchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHH-HH--HhcCCCEEEEEeCCCcCC
Q 007325 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWR-QA--DKYGVPRICFVNKMDRLG 221 (608)
Q Consensus 167 df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~-~~--~~~~~p~ivviNK~D~~~ 221 (608)
+|-..+..++|.+.+.++|++.++-.......-|+ .. .-..+|.++|-||+|+..
T Consensus 81 EfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlve 138 (246)
T KOG4252|consen 81 EFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVE 138 (246)
T ss_pred hHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhH
Confidence 99999999999999999999988754433333332 22 336899999999999865
No 323
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.73 E-value=1.5e-07 Score=92.52 Aligned_cols=115 Identities=17% Similarity=0.233 Sum_probs=71.1
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCc--
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF-- 168 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df-- 168 (608)
.+|.++|.+|+||||+.|.|+....... + -.....|.........+.+..+.+|||||+.|-
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~--~--------------~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~ 64 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKS--G--------------SSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDG 64 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS------------------TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTE
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceee--c--------------cccCCcccccceeeeeecceEEEEEeCCCCCCCcc
Confidence 4799999999999999999972211000 0 001223555555566789999999999998652
Q ss_pred -----hHHHHHHHH----hcCeEEEEEcCCCCCchhHHHHHHHHHh-cC----CCEEEEEeCCCcCCC
Q 007325 169 -----TLEVERALR----VLDGAICLFDSVAGVEPQSETVWRQADK-YG----VPRICFVNKMDRLGA 222 (608)
Q Consensus 169 -----~~~~~~~l~----~~D~~i~VvDa~~g~~~~t~~~~~~~~~-~~----~p~ivviNK~D~~~~ 222 (608)
..++.+++. ..+++|+|++.. .+.......++.+.. .+ .-.+|+++..|....
T Consensus 65 ~~~~~~~~i~~~l~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~ 131 (212)
T PF04548_consen 65 SDEEIIREIKRCLSLCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELED 131 (212)
T ss_dssp EHHHHHHHHHHHHHHTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTT
T ss_pred cHHHHHHHHHHHHHhccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccccc
Confidence 223333332 358899999988 666667777766543 22 246788888886553
No 324
>PTZ00258 GTP-binding protein; Provisional
Probab=98.73 E-value=6e-08 Score=102.79 Aligned_cols=84 Identities=18% Similarity=0.227 Sum_probs=60.6
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeec--------------
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-------------- 153 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~-------------- 153 (608)
.+...|+|||.||+|||||+|+|. +.....+.. +++|+....+.+.+.
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt---~~~~~v~n~---------------pftTi~p~~g~v~~~d~r~~~l~~~~~~~ 80 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALC---KQQVPAENF---------------PFCTIDPNTARVNVPDERFDWLCKHFKPK 80 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHh---cCcccccCC---------------CCCcccceEEEEecccchhhHHHHHcCCc
Confidence 344689999999999999999994 322222221 344666666666554
Q ss_pred ---CeeEEEEeCCCCCC-------chHHHHHHHHhcCeEEEEEcCC
Q 007325 154 ---KHRINIIDTPGHVD-------FTLEVERALRVLDGAICLFDSV 189 (608)
Q Consensus 154 ---~~~i~liDTPG~~d-------f~~~~~~~l~~~D~~i~VvDa~ 189 (608)
..++.++||||... ........++.+|++++|||+.
T Consensus 81 ~~~~aqi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 81 SIVPAQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred ccCCCCeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 23599999999764 3446677889999999999985
No 325
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.72 E-value=4e-08 Score=103.48 Aligned_cols=117 Identities=21% Similarity=0.233 Sum_probs=73.0
Q ss_pred CCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCC
Q 007325 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (608)
Q Consensus 87 ~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 166 (608)
....|+++++|.+|+||||+++.+. .....+.+..+ +|-..-.+++.++-.++.+|||||..
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vt------radvevqpYaF------------TTksL~vGH~dykYlrwQViDTPGIL 226 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVT------RADDEVQPYAF------------TTKLLLVGHLDYKYLRWQVIDTPGIL 226 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhccccc------ccccccCCccc------------ccchhhhhhhhhheeeeeecCCcccc
Confidence 3457899999999999999988884 11122222222 14445556666777789999999987
Q ss_pred Cc------hHHH--HHHHHhc-CeEEEEEcCCC--CCchhHHH-HHHHHH--hcCCCEEEEEeCCCcCC
Q 007325 167 DF------TLEV--ERALRVL-DGAICLFDSVA--GVEPQSET-VWRQAD--KYGVPRICFVNKMDRLG 221 (608)
Q Consensus 167 df------~~~~--~~~l~~~-D~~i~VvDa~~--g~~~~t~~-~~~~~~--~~~~p~ivviNK~D~~~ 221 (608)
|- .-++ +.++.-. -+++++.|-++ |....... ++..++ -.+.|.|+|+||+|...
T Consensus 227 D~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~ 295 (620)
T KOG1490|consen 227 DRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMR 295 (620)
T ss_pred CcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccC
Confidence 62 1222 2233222 45677888874 43322221 222222 25789999999999865
No 326
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=98.72 E-value=9.4e-08 Score=79.29 Aligned_cols=79 Identities=24% Similarity=0.396 Sum_probs=67.4
Q ss_pred CeEEEEEEeeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCeeecCCEEEE--cCCC--cc
Q 007325 389 PFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DT 464 (608)
Q Consensus 389 p~~~~V~K~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~--~~ 464 (608)
||.+.|..++..+ .|.+..+||.+|++++||+|+..+.+...+|++|... ..++++|.|||.+++ .+++ ++
T Consensus 1 p~r~~V~~v~~~~-~g~vv~G~v~~G~i~~Gd~v~i~P~~~~~~V~si~~~----~~~~~~a~aGd~v~~~l~~~~~~~v 75 (83)
T cd03698 1 PFRLPISDKYKDQ-GGTVVSGKVESGSIQKGDTLLVMPSKESVEVKSIYVD----DEEVDYAVAGENVRLKLKGIDEEDI 75 (83)
T ss_pred CeEEEEEeEEEcC-CCcEEEEEEeeeEEeCCCEEEEeCCCcEEEEEEEEEC----CeECCEECCCCEEEEEECCCCHHHC
Confidence 6788888888877 8999999999999999999999998888888888633 378999999999996 5554 47
Q ss_pred cccceecc
Q 007325 465 ITGETLCD 472 (608)
Q Consensus 465 ~~GdtL~~ 472 (608)
..|++||+
T Consensus 76 ~~G~vl~~ 83 (83)
T cd03698 76 SPGDVLCS 83 (83)
T ss_pred CCCCEEeC
Confidence 88999874
No 327
>cd01434 EFG_mtEFG1_IV EFG_mtEFG1_IV: domains similar to domain IV of the bacterial translational elongation factor (EF) EF-G. Included in this group is a domain of mitochondrial Elongation factor G1 (mtEFG1) proteins homologous to domain IV of EF-G. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provi
Probab=98.71 E-value=1.4e-08 Score=89.89 Aligned_cols=45 Identities=40% Similarity=0.693 Sum_probs=42.6
Q ss_pred EEEeeecceeEEEEEeeecCCCCeeEEEEEEEEecCCCCcceeec
Q 007325 563 YRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEVQCQKNIFL 607 (608)
Q Consensus 563 yrETi~~~~~~~~~~~kq~gg~gq~~~v~~~~ePl~~g~g~~~~~ 607 (608)
|||||+++++..+.|++|+||.+|||+|+|+++|+++|+|++|..
T Consensus 1 YrEti~~~~~~~~~~~~~~gg~~~~a~v~l~v~P~~~g~g~~~~~ 45 (116)
T cd01434 1 YRETITKPAEFEYRHKKQSGGAGQYGHVVLEIEPLPRGSGFEFVN 45 (116)
T ss_pred CCcccCceeeEEEEEEEcCCCCCeEEEEEEEEEECCCCCCCEEEE
Confidence 899999999988999999999999999999999999999998853
No 328
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.71 E-value=5.7e-08 Score=95.65 Aligned_cols=118 Identities=15% Similarity=0.171 Sum_probs=85.0
Q ss_pred CCCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCC
Q 007325 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (608)
Q Consensus 86 ~~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 165 (608)
+..+.+.+++.|.+|+|||+|+|.++.... +...++. +.|-|.......+ +..+.++|.||+
T Consensus 132 Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~-~~~t~k~--------------K~g~Tq~in~f~v---~~~~~~vDlPG~ 193 (320)
T KOG2486|consen 132 PKDKRPELAFYGRSNVGKSSLLNDLVRVKN-IADTSKS--------------KNGKTQAINHFHV---GKSWYEVDLPGY 193 (320)
T ss_pred CCCCCceeeeecCCcccHHHHHhhhhhhhh-hhhhcCC--------------CCccceeeeeeec---cceEEEEecCCc
Confidence 445668999999999999999999963221 1111111 3344555444443 678999999993
Q ss_pred C----------CchHHHHHHH---HhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCC
Q 007325 166 V----------DFTLEVERAL---RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (608)
Q Consensus 166 ~----------df~~~~~~~l---~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~ 221 (608)
. |+...+..++ +..=.+.+++|++-++++.+...+.++.+.++|+.+|+||||+..
T Consensus 194 ~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~k 262 (320)
T KOG2486|consen 194 GRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCDKQK 262 (320)
T ss_pred ccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEEeeehhhhhh
Confidence 2 3444444444 233456778999999999999999999999999999999999753
No 329
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.71 E-value=8.6e-08 Score=100.52 Aligned_cols=109 Identities=18% Similarity=0.210 Sum_probs=62.1
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcce---eEeecEEEEeecC-eeEEEEeCCCCC
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGI---TITSAATTTYWNK-HRINIIDTPGHV 166 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~gi---Ti~~~~~~~~~~~-~~i~liDTPG~~ 166 (608)
.+||++|.+|+|||||+|+|. |.-. -+.|.. ..|. |.... .+.... ..+.+||.||..
T Consensus 36 l~IaV~G~sGsGKSSfINalr---Gl~~----~d~~aA---------~tGv~etT~~~~--~Y~~p~~pnv~lWDlPG~g 97 (376)
T PF05049_consen 36 LNIAVTGESGSGKSSFINALR---GLGH----EDEGAA---------PTGVVETTMEPT--PYPHPKFPNVTLWDLPGIG 97 (376)
T ss_dssp EEEEEEESTTSSHHHHHHHHT---T--T----TSTTS-----------SSSHSCCTS-E--EEE-SS-TTEEEEEE--GG
T ss_pred eEEEEECCCCCCHHHHHHHHh---CCCC----CCcCcC---------CCCCCcCCCCCe--eCCCCCCCCCeEEeCCCCC
Confidence 599999999999999999994 2110 011110 1111 22222 222222 359999999975
Q ss_pred CchHHHHHH-----HHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCc
Q 007325 167 DFTLEVERA-----LRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDR 219 (608)
Q Consensus 167 df~~~~~~~-----l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~ 219 (608)
.-......+ +...|.+|++.+. -.......+++.+.++++|+.+|-+|+|.
T Consensus 98 t~~f~~~~Yl~~~~~~~yD~fiii~s~--rf~~ndv~La~~i~~~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 98 TPNFPPEEYLKEVKFYRYDFFIIISSE--RFTENDVQLAKEIQRMGKKFYFVRTKVDS 153 (376)
T ss_dssp GSS--HHHHHHHTTGGG-SEEEEEESS--S--HHHHHHHHHHHHTT-EEEEEE--HHH
T ss_pred CCCCCHHHHHHHccccccCEEEEEeCC--CCchhhHHHHHHHHHcCCcEEEEEecccc
Confidence 422233333 4456887776543 34566777888999999999999999995
No 330
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=5.8e-08 Score=88.23 Aligned_cols=113 Identities=18% Similarity=0.169 Sum_probs=82.4
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCch
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~ 169 (608)
.-.+.++|--|||||||++.|- ..+.+... -|..+..-.+...+.+++-+|.-||..-.
T Consensus 20 ~gKllFlGLDNAGKTTLLHMLK-----dDrl~qhv----------------PTlHPTSE~l~Ig~m~ftt~DLGGH~qAr 78 (193)
T KOG0077|consen 20 FGKLLFLGLDNAGKTTLLHMLK-----DDRLGQHV----------------PTLHPTSEELSIGGMTFTTFDLGGHLQAR 78 (193)
T ss_pred CceEEEEeecCCchhhHHHHHc-----cccccccC----------------CCcCCChHHheecCceEEEEccccHHHHH
Confidence 3478999999999999999982 11222111 15555555666788999999999999888
Q ss_pred HHHHHHHHhcCeEEEEEcCCCCCch-hHHHH----HHHHHhcCCCEEEEEeCCCcCCCc
Q 007325 170 LEVERALRVLDGAICLFDSVAGVEP-QSETV----WRQADKYGVPRICFVNKMDRLGAN 223 (608)
Q Consensus 170 ~~~~~~l~~~D~~i~VvDa~~g~~~-~t~~~----~~~~~~~~~p~ivviNK~D~~~~~ 223 (608)
.-+..++..+|++|++||+-+.-.. ..+.. +....-.++|+++..||+|++.+-
T Consensus 79 r~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~ 137 (193)
T KOG0077|consen 79 RVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA 137 (193)
T ss_pred HHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc
Confidence 8888899999999999999863221 11111 222223689999999999998865
No 331
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.70 E-value=4.2e-08 Score=99.59 Aligned_cols=79 Identities=18% Similarity=0.185 Sum_probs=56.1
Q ss_pred EEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCe-----------------
Q 007325 93 IGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKH----------------- 155 (608)
Q Consensus 93 i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~----------------- 155 (608)
|+|||.+|+|||||+|+|. +.....+.. .++|++...+.+.+.+.
T Consensus 1 igivG~PN~GKSTLfn~Lt---~~~~~~~n~---------------pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~ 62 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALT---KAGAEAANY---------------PFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPA 62 (274)
T ss_pred CeEeCCCCCcHHHHHHHHh---CCCCccccc---------------cccchhceeeeEEeccchhhhHHHHhCCceeeee
Confidence 5899999999999999995 322222111 33465555555555432
Q ss_pred eEEEEeCCCCCC-------chHHHHHHHHhcCeEEEEEcCC
Q 007325 156 RINIIDTPGHVD-------FTLEVERALRVLDGAICLFDSV 189 (608)
Q Consensus 156 ~i~liDTPG~~d-------f~~~~~~~l~~~D~~i~VvDa~ 189 (608)
.+.++||||..+ ........++.+|++++|||+.
T Consensus 63 ~i~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 63 TIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred EEEEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCc
Confidence 599999999764 3345667789999999999986
No 332
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.65 E-value=3.2e-07 Score=94.25 Aligned_cols=149 Identities=19% Similarity=0.220 Sum_probs=97.4
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCe--eEEEEeCCCCCC
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKH--RINIIDTPGHVD 167 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~--~i~liDTPG~~d 167 (608)
--+|.++|.+|.||||++|.|+...-. +.....+....-.++++.+......+.-++. .+++|||||+.|
T Consensus 23 ~f~im~~G~sG~GKttfiNtL~~~~l~--------~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD 94 (373)
T COG5019 23 DFTIMVVGESGLGKTTFINTLFGTSLV--------DETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGD 94 (373)
T ss_pred ceEEEEecCCCCchhHHHHhhhHhhcc--------CCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccc
Confidence 369999999999999999999744111 1111111111113445556555555555554 688999999988
Q ss_pred chHH--------------HHHHH-------Hh-------cCeEEEEEcCC-CCCchhHHHHHHHHHhcCCCEEEEEeCCC
Q 007325 168 FTLE--------------VERAL-------RV-------LDGAICLFDSV-AGVEPQSETVWRQADKYGVPRICFVNKMD 218 (608)
Q Consensus 168 f~~~--------------~~~~l-------~~-------~D~~i~VvDa~-~g~~~~t~~~~~~~~~~~~p~ivviNK~D 218 (608)
|... ...++ |. .+++++.+-.+ +|+.+.+.+.++.+.. .+.+|-||-|.|
T Consensus 95 ~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~-~vNlIPVI~KaD 173 (373)
T COG5019 95 FIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSK-RVNLIPVIAKAD 173 (373)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhc-ccCeeeeeeccc
Confidence 5221 11111 11 36788888765 8999999988887754 477899999999
Q ss_pred cCCC-cHHHHHHHHHHhhCCccEEEeccCC
Q 007325 219 RLGA-NFFRTRDMIVTNLGAKPLVVQLPVG 247 (608)
Q Consensus 219 ~~~~-~~~~~~~~i~~~l~~~~~~~~~pi~ 247 (608)
.... ++....+.|++.+...-+++.-|..
T Consensus 174 ~lT~~El~~~K~~I~~~i~~~nI~vf~pyd 203 (373)
T COG5019 174 TLTDDELAEFKERIREDLEQYNIPVFDPYD 203 (373)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCceeCCCC
Confidence 8764 4566666777766666666665643
No 333
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.62 E-value=3.9e-07 Score=93.22 Aligned_cols=137 Identities=20% Similarity=0.198 Sum_probs=79.4
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCCCCCCc
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDF 168 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~df 168 (608)
-||.++|.+|.|||||+|.|+........ .. .+.......+..++......+..++ ..+++|||||+.+.
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~~~~-~~-------~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~ 76 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDIISED-SS-------IPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDN 76 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS-----------------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhccccccc-cc-------ccccccccccccceeeEEEEeccCCcceEEEEEeCCCcccc
Confidence 48999999999999999999732211110 00 0000111223334444444444443 46889999998762
Q ss_pred hH--------------HHHHHH-------------HhcCeEEEEEcCC-CCCchhHHHHHHHHHhcCCCEEEEEeCCCcC
Q 007325 169 TL--------------EVERAL-------------RVLDGAICLFDSV-AGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (608)
Q Consensus 169 ~~--------------~~~~~l-------------~~~D~~i~VvDa~-~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~ 220 (608)
.. ....++ ...|++++.++++ +++.+.+.+.++.+.. .+++|-|+.|.|..
T Consensus 77 i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~-~vNvIPvIaKaD~l 155 (281)
T PF00735_consen 77 IDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSK-RVNVIPVIAKADTL 155 (281)
T ss_dssp STHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTT-TSEEEEEESTGGGS
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhcc-cccEEeEEeccccc
Confidence 11 111111 1238899999986 7888888888887754 48899999999987
Q ss_pred CCc-HHHHHHHHHHhhC
Q 007325 221 GAN-FFRTRDMIVTNLG 236 (608)
Q Consensus 221 ~~~-~~~~~~~i~~~l~ 236 (608)
..+ .....+.|++.+.
T Consensus 156 t~~el~~~k~~i~~~l~ 172 (281)
T PF00735_consen 156 TPEELQAFKQRIREDLE 172 (281)
T ss_dssp -HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 643 4444555555443
No 334
>PF03764 EFG_IV: Elongation factor G, domain IV; InterPro: IPR005517 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. EF2 has five domains. This entry represents domain IV found in EF2 (or EF-G) of both prokaryotes and eukaryotes. The EF2-GTP-ribosome complex undergoes extensive structural rearrangement for tRNA-mRNA movement to occur. Domain IV, which extends from the 'body' of the EF2 molecule much like a lever arm, appears to be essential for the structural transition to take place. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3J0E_H 1FNM_A 3IZP_E 2OM7_L 1KTV_A 2J7K_A 2BM1_A 2BM0_A 2BV3_A 1ZM3_E ....
Probab=98.60 E-value=6.9e-08 Score=86.05 Aligned_cols=47 Identities=45% Similarity=0.688 Sum_probs=44.2
Q ss_pred ceEEEEEeeeccee-EEEEEeeecCCCCeeEEEEEEEEecCCCCcceee
Q 007325 559 PQVNYRESISKVSE-VKYVHKKQSGGQGQFADITVRFEPMEVQCQKNIF 606 (608)
Q Consensus 559 p~V~yrETi~~~~~-~~~~~~kq~gg~gq~~~v~~~~ePl~~g~g~~~~ 606 (608)
|+|+|||||+++++ ..+.|+++.||.++|+.+.++++|++ |.|+.|.
T Consensus 1 pqV~yrEti~~~~~~~~~~~~~~~g~~~~~a~v~~~~~P~~-~~~~~~~ 48 (120)
T PF03764_consen 1 PQVAYRETITKEVEGVEETFKRQYGGKRQFAKVILRVEPLE-GGGNIFV 48 (120)
T ss_dssp EEEETEEEESS-EEHEEEEEEEECTSSEEEEEEEEEEEETS-TSSEEEE
T ss_pred CccccchhcCccHHHHHHHHHHHhCCCCceEEEEEEEeecc-cCCceee
Confidence 89999999999999 99999999999999999999999999 9999885
No 335
>KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=1.9e-08 Score=103.92 Aligned_cols=130 Identities=32% Similarity=0.309 Sum_probs=102.4
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccc--ee-----------eccCCccccchhhhhhcceeEeecEEEEeecCe
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKI--GE-----------VHEGTATMDWMEQEQERGITITSAATTTYWNKH 155 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~--g~-----------~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~ 155 (608)
-.+||+++||.++||||+.- +..|.+... .. .+..+.++|....|++||+++......+....+
T Consensus 6 ~~~ni~~i~h~~s~~stt~~---~~~g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae~~r~i~I~~~l~~~~t~k~ 82 (391)
T KOG0052|consen 6 IHINIVVIGHVDSGKSTTTG---YKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKY 82 (391)
T ss_pred cccceEEEEeeeeeeeEEEe---eecccccchhhhhhchHHHhhccceeeeeeeechhhhccccceEEEEEeecccceeE
Confidence 35799999999999999887 323433221 00 122336789999999999998888888888889
Q ss_pred eEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCC-------CCchhHHHHHHHHHhcCCC-EEEEEeCCCcCC
Q 007325 156 RINIIDTPGHVDFTLEVERALRVLDGAICLFDSVA-------GVEPQSETVWRQADKYGVP-RICFVNKMDRLG 221 (608)
Q Consensus 156 ~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~-------g~~~~t~~~~~~~~~~~~p-~ivviNK~D~~~ 221 (608)
.+++||.|||.||...+......+|.+++.|.+.. ....|++++...+...++. .++.+||||-..
T Consensus 83 ~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~qliv~v~k~D~~~ 156 (391)
T KOG0052|consen 83 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTE 156 (391)
T ss_pred EEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhccccceeeeEEeecccccC
Confidence 99999999999999999999999999999998842 2357899888888888754 566689999754
No 336
>cd01680 EFG_like_IV Elongation Factor G-like domain IV. This family includes the translational elongation factor termed EF-2 (for Archaea and Eukarya) and EF-G (for Bacteria), ribosomal protection proteins that mediate tetracycline resistance and, an evolutionarily conserved U5 snRNP-specific protein (U5-116kD). In complex with GTP, EF-G/EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. It has been shown that EF-G/EF-2_IV domain mimics the shape of anticodon arm of the tRNA in the structurally homologous ternary complex of Petra, EF-Tu (another transcriptional elongation factor) and GTP analog. The tip portion of this domain is found in a position that overlaps the anticodon arm of the A-site tRNA, implying that EF-G/EF-2 displaces the A-site tRNA to the P-site by physical interaction with the anticodon arm.
Probab=98.54 E-value=7.6e-08 Score=85.21 Aligned_cols=44 Identities=34% Similarity=0.588 Sum_probs=42.1
Q ss_pred EEEeeecceeEEEEEeeecCCCCeeEEEEEEEEecCCCCcceee
Q 007325 563 YRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEVQCQKNIF 606 (608)
Q Consensus 563 yrETi~~~~~~~~~~~kq~gg~gq~~~v~~~~ePl~~g~g~~~~ 606 (608)
|||||.++++..++|++|+||.+|||+|+++++|+++|+|++|.
T Consensus 1 YREti~~~~~~~~~~~~~~gg~~~~a~v~l~veP~~~~~~~~~~ 44 (116)
T cd01680 1 YRETIRKSVEATGEFERELGGKPQFGEVTLRVEPLERGSGVRVV 44 (116)
T ss_pred CcCccCcceeeeEEEccccCCCCeEEEEEEEEEECCCCCCcEEE
Confidence 99999999998899999999999999999999999999998875
No 337
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.54 E-value=3.7e-07 Score=85.11 Aligned_cols=51 Identities=20% Similarity=0.165 Sum_probs=40.7
Q ss_pred HHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcC
Q 007325 170 LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (608)
Q Consensus 170 ~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~ 220 (608)
......++.+|++|+|+|+.++...+...+.+.+...++|+++|+||+|+.
T Consensus 4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~ 54 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLV 54 (156)
T ss_pred HHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhC
Confidence 345566677999999999998766666666666666789999999999975
No 338
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=5.9e-07 Score=95.39 Aligned_cols=120 Identities=20% Similarity=0.236 Sum_probs=88.1
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchH
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~ 170 (608)
-.+|++|++|+|||||+..|+...- .+.-.+....||+.++ +..+|+++.+|. | ..
T Consensus 70 fIvavvGPpGtGKsTLirSlVrr~t---------------k~ti~~i~GPiTvvsg------K~RRiTflEcp~--D-l~ 125 (1077)
T COG5192 70 FIVAVVGPPGTGKSTLIRSLVRRFT---------------KQTIDEIRGPITVVSG------KTRRITFLECPS--D-LH 125 (1077)
T ss_pred eEEEeecCCCCChhHHHHHHHHHHH---------------HhhhhccCCceEEeec------ceeEEEEEeChH--H-HH
Confidence 3677999999999999999973211 1111122223555443 467899999993 3 45
Q ss_pred HHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEE-EEeCCCcCCCcHHHHHHHHHHhhC
Q 007325 171 EVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRIC-FVNKMDRLGANFFRTRDMIVTNLG 236 (608)
Q Consensus 171 ~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~iv-viNK~D~~~~~~~~~~~~i~~~l~ 236 (608)
.+......+|.++++||+..|..-.|.+.+..+...+.|.++ |++..|+... ..++.+++++|.
T Consensus 126 ~miDvaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk~--~stLr~~KKrlk 190 (1077)
T COG5192 126 QMIDVAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLFKN--PSTLRSIKKRLK 190 (1077)
T ss_pred HHHhHHHhhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeecccccC--hHHHHHHHHHHh
Confidence 667778899999999999999999999999999999999865 6899998653 234555555444
No 339
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.48 E-value=1.5e-06 Score=82.09 Aligned_cols=124 Identities=17% Similarity=0.116 Sum_probs=64.3
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeecc-CCccccchhhhhhcc---eeEeecEEE-Ee-------------
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHE-GTATMDWMEQEQERG---ITITSAATT-TY------------- 151 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~-g~~~~d~~~~e~~~g---iTi~~~~~~-~~------------- 151 (608)
++.|.+.|++|||||||+++++..-....+.+-+.. -.+..|.....+..| +.+.+...+ ..
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~ 92 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL 92 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence 579999999999999999999855433222222110 012123222222122 122222111 11
Q ss_pred e-cCeeEEEEeCCCCCCchHHHHHHHHhcC-eEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCC
Q 007325 152 W-NKHRINIIDTPGHVDFTLEVERALRVLD-GAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (608)
Q Consensus 152 ~-~~~~i~liDTPG~~df~~~~~~~l~~~D-~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~ 221 (608)
| ....+.||.+.| +...... ....| .-|+|+|..+|...--+-.-- .-.--++||||.|+..
T Consensus 93 ~~~~~Dll~iEs~G--NL~~~~s--p~L~d~~~v~VidvteGe~~P~K~gP~----i~~aDllVInK~DLa~ 156 (202)
T COG0378 93 DFPDLDLLFIESVG--NLVCPFS--PDLGDHLRVVVIDVTEGEDIPRKGGPG----IFKADLLVINKTDLAP 156 (202)
T ss_pred cCCcCCEEEEecCc--ceecccC--cchhhceEEEEEECCCCCCCcccCCCc----eeEeeEEEEehHHhHH
Confidence 0 225788999999 3221111 12234 788999999875421110000 0012379999999854
No 340
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.44 E-value=2.6e-06 Score=82.67 Aligned_cols=83 Identities=17% Similarity=0.263 Sum_probs=63.3
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCc--
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF-- 168 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df-- 168 (608)
..|+++|.|.+|||||+..+. ...++....+ -+|.....+.+.+++..|.++|.||.+.-
T Consensus 63 aRValIGfPSVGKStlLs~iT---~T~SeaA~ye---------------FTTLtcIpGvi~y~ga~IQllDLPGIieGAs 124 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKIT---STHSEAASYE---------------FTTLTCIPGVIHYNGANIQLLDLPGIIEGAS 124 (364)
T ss_pred eEEEEecCCCccHHHHHHHhh---cchhhhhcee---------------eeEEEeecceEEecCceEEEecCcccccccc
Confidence 579999999999999999994 2122221111 13777777888899999999999998763
Q ss_pred -----hHHHHHHHHhcCeEEEEEcCCCC
Q 007325 169 -----TLEVERALRVLDGAICLFDSVAG 191 (608)
Q Consensus 169 -----~~~~~~~l~~~D~~i~VvDa~~g 191 (608)
..++....+.+|.+++|.||+..
T Consensus 125 qgkGRGRQviavArtaDlilMvLDatk~ 152 (364)
T KOG1486|consen 125 QGKGRGRQVIAVARTADLILMVLDATKS 152 (364)
T ss_pred cCCCCCceEEEEeecccEEEEEecCCcc
Confidence 34466677889999999999964
No 341
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=98.43 E-value=1.9e-06 Score=71.27 Aligned_cols=78 Identities=22% Similarity=0.365 Sum_probs=62.7
Q ss_pred CeEEEEEEeeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCeeecCCEEEE--cCCC--cc
Q 007325 389 PFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DT 464 (608)
Q Consensus 389 p~~~~V~K~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~--~~ 464 (608)
||.+.|..++... |.+..+||.+|++++||+|+..+.+...+|++|... ..++++|.|||.+++ .+++ ++
T Consensus 1 plr~~I~~v~~~~--g~vv~G~v~~G~i~~G~~v~i~P~~~~~~V~si~~~----~~~~~~a~aGd~v~l~l~~i~~~~v 74 (82)
T cd04089 1 PLRLPIIDKYKDM--GTVVLGKVESGTIKKGDKLLVMPNKTQVEVLSIYNE----DVEVRYARPGENVRLRLKGIEEEDI 74 (82)
T ss_pred CeEEEEEeEEEcC--CEEEEEEEeeeEEecCCEEEEeCCCcEEEEEEEEEC----CEECCEECCCCEEEEEecCCCHHHC
Confidence 5677777777543 899999999999999999999998888888888533 368999999999998 3332 36
Q ss_pred cccceecc
Q 007325 465 ITGETLCD 472 (608)
Q Consensus 465 ~~GdtL~~ 472 (608)
..|+.||+
T Consensus 75 ~~G~vl~~ 82 (82)
T cd04089 75 SPGFVLCS 82 (82)
T ss_pred CCCCEEeC
Confidence 78888864
No 342
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.39 E-value=5e-06 Score=80.18 Aligned_cols=138 Identities=17% Similarity=0.172 Sum_probs=81.7
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCCCCCC
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVD 167 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~d 167 (608)
--||.+||.+|.|||||+|.|. .++.....+ .|+..+-....+.+.+....+..++ .++++|||||+.|
T Consensus 46 ~FNIMVVgqSglgkstlinTlf-~s~v~~~s~--------~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGD 116 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLF-KSHVSDSSS--------SDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGD 116 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHH-HHHHhhccC--------CCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCccc
Confidence 3699999999999999999995 333222211 1111111111223444444444444 3688999999988
Q ss_pred ch-------------H-HHHHHHH--------------hcCeEEEEEcCC-CCCchhHHHHHHHHHhcCCCEEEEEeCCC
Q 007325 168 FT-------------L-EVERALR--------------VLDGAICLFDSV-AGVEPQSETVWRQADKYGVPRICFVNKMD 218 (608)
Q Consensus 168 f~-------------~-~~~~~l~--------------~~D~~i~VvDa~-~g~~~~t~~~~~~~~~~~~p~ivviNK~D 218 (608)
+. . +.+.+++ ...++++.+.++ +...+.+.+.++.+-+. +.++-|+-|.|
T Consensus 117 qInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~v-vNvvPVIakaD 195 (336)
T KOG1547|consen 117 QINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEV-VNVVPVIAKAD 195 (336)
T ss_pred ccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhh-heeeeeEeecc
Confidence 31 1 1222222 125677777776 66777777777766442 56778899999
Q ss_pred cCCCc-HHHHHHHHHHhhCC
Q 007325 219 RLGAN-FFRTRDMIVTNLGA 237 (608)
Q Consensus 219 ~~~~~-~~~~~~~i~~~l~~ 237 (608)
-...+ .....+.|++.|..
T Consensus 196 tlTleEr~~FkqrI~~el~~ 215 (336)
T KOG1547|consen 196 TLTLEERSAFKQRIRKELEK 215 (336)
T ss_pred cccHHHHHHHHHHHHHHHHh
Confidence 76643 23344555555533
No 343
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.39 E-value=1.9e-06 Score=80.74 Aligned_cols=125 Identities=20% Similarity=0.116 Sum_probs=68.6
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCccccee--eccCCccccchhhhhh--cceeEeecEEEEee--------------
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGE--VHEGTATMDWMEQEQE--RGITITSAATTTYW-------------- 152 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~--~~~g~~~~d~~~~e~~--~giTi~~~~~~~~~-------------- 152 (608)
|.+.++|..|+|||||+++++..... .+..- -+.|....|....... +-+.+...+.++..
T Consensus 1 p~~~l~G~~GsGKTtl~~~l~~~~~~-~~~~~i~~~~G~~~~d~~~~~~~~~~v~~l~~GCiCC~~~~~l~~~l~~l~~~ 79 (158)
T cd03112 1 PVTVLTGFLGAGKTTLLNHILTEQHG-RKIAVIENEFGEVGIDNQLVVDTDEEIIEMNNGCICCTVRGDLIRALLDLLER 79 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHhcccC-CcEEEEecCCCccchhHHHHhCCCceEEEeCCCEeEeeCchhHHHHHHHHHHH
Confidence 46789999999999999999854211 11111 1223222332222111 11233333333321
Q ss_pred -----cCeeEEEEeCCCCCCchHHHH--------HHHHhcCeEEEEEcCCCCCchh--HHHHHHHHHhcCCCEEEEEeCC
Q 007325 153 -----NKHRINIIDTPGHVDFTLEVE--------RALRVLDGAICLFDSVAGVEPQ--SETVWRQADKYGVPRICFVNKM 217 (608)
Q Consensus 153 -----~~~~i~liDTPG~~df~~~~~--------~~l~~~D~~i~VvDa~~g~~~~--t~~~~~~~~~~~~p~ivviNK~ 217 (608)
...++.+|||||..+-..... ......|.++.|||+....... ......|+... -++++||+
T Consensus 80 ~~~~~~~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a---d~ivlnk~ 156 (158)
T cd03112 80 LDAGKIAFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA---DRILLNKT 156 (158)
T ss_pred HHhccCCCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC---CEEEEecc
Confidence 235789999999876332222 2334469999999997543321 11222333333 37899999
Q ss_pred Cc
Q 007325 218 DR 219 (608)
Q Consensus 218 D~ 219 (608)
|+
T Consensus 157 dl 158 (158)
T cd03112 157 DL 158 (158)
T ss_pred cC
Confidence 96
No 344
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.38 E-value=7.6e-06 Score=90.47 Aligned_cols=118 Identities=15% Similarity=0.145 Sum_probs=69.0
Q ss_pred CCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCC
Q 007325 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (608)
Q Consensus 87 ~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 166 (608)
..-..+|+++|.+|+|||||+|.|+...... .... ..+ |.........+++..+++|||||..
T Consensus 115 LdfslrIvLVGKTGVGKSSLINSILGekvf~--vss~--------------~~~-TTr~~ei~~~idG~~L~VIDTPGL~ 177 (763)
T TIGR00993 115 LDFSLNILVLGKSGVGKSATINSIFGEVKFS--TDAF--------------GMG-TTSVQEIEGLVQGVKIRVIDTPGLK 177 (763)
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcccccc--ccCC--------------CCC-ceEEEEEEEEECCceEEEEECCCCC
Confidence 3445789999999999999999997322111 1110 012 2223333345678899999999988
Q ss_pred Cch------HHH----HHHHH--hcCeEEEEEcCCC-CCchhHHHHHHHHHh-cC----CCEEEEEeCCCcCC
Q 007325 167 DFT------LEV----ERALR--VLDGAICLFDSVA-GVEPQSETVWRQADK-YG----VPRICFVNKMDRLG 221 (608)
Q Consensus 167 df~------~~~----~~~l~--~~D~~i~VvDa~~-g~~~~t~~~~~~~~~-~~----~p~ivviNK~D~~~ 221 (608)
+.. .++ ...+. ..|++|+|..... .........++.+.. ++ .-.|||++..|...
T Consensus 178 dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 178 SSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred ccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 742 122 22333 2588887765442 122233334444322 22 34688899999864
No 345
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.36 E-value=7.2e-06 Score=73.66 Aligned_cols=117 Identities=21% Similarity=0.268 Sum_probs=77.6
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchh--hhhhcceeEeecEEEEeecCeeEEEEeCCCCC
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWME--QEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~--~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 166 (608)
+.-.|+++|.-++|||.++++|++-.+.....- . .|.-|..- .|..||. ...+.|.||.|..
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~--~--pTiEDiY~~svet~rga------------rE~l~lyDTaGlq 71 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTEL--H--PTIEDIYVASVETDRGA------------REQLRLYDTAGLQ 71 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCcc--c--cchhhheeEeeecCCCh------------hheEEEeeccccc
Confidence 345789999999999999999996554332110 0 01111110 1111221 2468899999999
Q ss_pred CchHHHHH-HHHhcCeEEEEEcCCCCCchhHHHHHHHH-H----hcCCCEEEEEeCCCcCC
Q 007325 167 DFTLEVER-ALRVLDGAICLFDSVAGVEPQSETVWRQA-D----KYGVPRICFVNKMDRLG 221 (608)
Q Consensus 167 df~~~~~~-~l~~~D~~i~VvDa~~g~~~~t~~~~~~~-~----~~~~p~ivviNK~D~~~ 221 (608)
+...+..+ ++..+|+.++|.|..+.-..+..++++.- . +..+|+++..||.|+..
T Consensus 72 ~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~ 132 (198)
T KOG3883|consen 72 GGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAE 132 (198)
T ss_pred CchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhccc
Confidence 98666655 55778999999999876666665555432 2 24579999999999853
No 346
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.36 E-value=3e-05 Score=83.29 Aligned_cols=129 Identities=19% Similarity=0.152 Sum_probs=68.7
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhh---CCcccceeeccCC-ccccchhh-hhhcceeEeecEEE-------------Ee
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYT---GRNYKIGEVHEGT-ATMDWMEQ-EQERGITITSAATT-------------TY 151 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~---g~~~~~g~~~~g~-~~~d~~~~-e~~~giTi~~~~~~-------------~~ 151 (608)
...|+++|.+|+||||++..|.... |........+... ...++... -...++.+...... +.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999996332 2111111111100 11111111 11122222211000 00
Q ss_pred ecCeeEEEEeCCCCCCchHH----HHHHHH--hcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcC
Q 007325 152 WNKHRINIIDTPGHVDFTLE----VERALR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (608)
Q Consensus 152 ~~~~~i~liDTPG~~df~~~----~~~~l~--~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~ 220 (608)
..++.+.||||||....... +..... ..|-+++|+|+..|... ....+...+.--+.-+++||+|..
T Consensus 180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a--~~~a~~F~~~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA--EAQAKAFKDSVDVGSVIITKLDGH 252 (429)
T ss_pred hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH--HHHHHHHHhccCCcEEEEECccCC
Confidence 13689999999997654333 333222 24778999999876443 223333333333567899999964
No 347
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=6e-06 Score=85.69 Aligned_cols=143 Identities=16% Similarity=0.214 Sum_probs=91.8
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCe--eEEEEeCCCCCCc
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKH--RINIIDTPGHVDF 168 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~--~i~liDTPG~~df 168 (608)
-++.++|.+|.|||||+|.|+...-. ++...+..+....+..++......+.-++. .++++||||+.|+
T Consensus 22 ftlmvvG~sGlGKsTfiNsLf~~~l~---------~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~ 92 (366)
T KOG2655|consen 22 FTLMVVGESGLGKSTFINSLFLTDLS---------GNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDA 92 (366)
T ss_pred eEEEEecCCCccHHHHHHHHHhhhcc---------CCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccc
Confidence 58999999999999999999743111 011111222222233445555555544543 5788999999884
Q ss_pred hH--------------HHHHHHH-------------hcCeEEEEEcCC-CCCchhHHHHHHHHHhcCCCEEEEEeCCCcC
Q 007325 169 TL--------------EVERALR-------------VLDGAICLFDSV-AGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (608)
Q Consensus 169 ~~--------------~~~~~l~-------------~~D~~i~VvDa~-~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~ 220 (608)
.. +...++. ..+++++.|..+ +|+.+.+.+.++.+. ..+.+|-||-|.|..
T Consensus 93 vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~-~~vNiIPVI~KaD~l 171 (366)
T KOG2655|consen 93 VDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLS-KKVNLIPVIAKADTL 171 (366)
T ss_pred ccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHh-ccccccceeeccccC
Confidence 21 1222221 347788888876 789999988877664 357889999999987
Q ss_pred CCc-HHHHHHHHHHhhCCccEEEe
Q 007325 221 GAN-FFRTRDMIVTNLGAKPLVVQ 243 (608)
Q Consensus 221 ~~~-~~~~~~~i~~~l~~~~~~~~ 243 (608)
..+ .......|.+.+..+.+++.
T Consensus 172 T~~El~~~K~~I~~~i~~~nI~vf 195 (366)
T KOG2655|consen 172 TKDELNQFKKRIRQDIEEHNIKVF 195 (366)
T ss_pred CHHHHHHHHHHHHHHHHHcCccee
Confidence 654 55566666666665555544
No 348
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=98.33 E-value=4.6e-06 Score=68.78 Aligned_cols=78 Identities=15% Similarity=0.139 Sum_probs=60.7
Q ss_pred EEEEEEeeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCeeecCCEEEE--cCCCcccccc
Q 007325 391 AGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLKDTITGE 468 (608)
Q Consensus 391 ~~~V~K~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~~~~~Gd 468 (608)
.+-|..++.....|+...+||.+|++++||+|+..+.+...+|..|... ..+++.|.|||.++| .+-+++.+|+
T Consensus 2 r~~V~dv~k~~~~~~~v~Gkv~~G~v~~Gd~v~~~P~~~~~~V~si~~~----~~~~~~a~aGd~v~l~l~~~~~i~~G~ 77 (81)
T cd03695 2 RFPVQYVIRPNADFRGYAGTIASGSIRVGDEVVVLPSGKTSRVKSIETF----DGELDEAGAGESVTLTLEDEIDVSRGD 77 (81)
T ss_pred EeeEEEEEeeCCCcEEEEEEEccceEECCCEEEEcCCCCeEEEEEEEEC----CcEeCEEcCCCEEEEEECCccccCCCC
Confidence 3445555544555778999999999999999999998888888888633 367899999999998 3334578898
Q ss_pred eecc
Q 007325 469 TLCD 472 (608)
Q Consensus 469 tL~~ 472 (608)
.||.
T Consensus 78 vl~~ 81 (81)
T cd03695 78 VIVA 81 (81)
T ss_pred EEeC
Confidence 8873
No 349
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=98.32 E-value=3.9e-06 Score=69.56 Aligned_cols=78 Identities=26% Similarity=0.310 Sum_probs=62.4
Q ss_pred EEEEEEeeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCeeecCCEEEE--cCC--Ccccc
Q 007325 391 AGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGL--KDTIT 466 (608)
Q Consensus 391 ~~~V~K~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl--~~~~~ 466 (608)
.+.|..++..++.|.+..+||.+|++++||+|.+.+.+...+|++|... ..++++|.|||.+++ .++ +++..
T Consensus 2 r~~i~~~~~~~~~g~vv~G~v~sG~i~~g~~v~~~p~~~~~~V~sI~~~----~~~~~~a~aGd~v~i~l~~~~~~~i~~ 77 (83)
T cd03696 2 RLPIDRVFTVKGQGTVVTGTVLSGSVKVGDKVEILPLGEETRVRSIQVH----GKDVEEAKAGDRVALNLTGVDAKDLER 77 (83)
T ss_pred EEEEEEEEEcCCcEEEEEEEEeecEEeCCCEEEECCCCceEEEEEEEEC----CcCcCEEcCCCEEEEEEcCCCHHHcCC
Confidence 4566777767788999999999999999999999988877778887533 467899999999998 333 24678
Q ss_pred cceecc
Q 007325 467 GETLCD 472 (608)
Q Consensus 467 GdtL~~ 472 (608)
||.|++
T Consensus 78 G~vl~~ 83 (83)
T cd03696 78 GDVLSS 83 (83)
T ss_pred ccEEcC
Confidence 888763
No 350
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=98.31 E-value=1.7e-06 Score=82.54 Aligned_cols=109 Identities=17% Similarity=0.072 Sum_probs=70.2
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCccc--ceeeccCCccccchhhhhhcceeEeecEEEEee---cCeeEEEEeCCCC
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYK--IGEVHEGTATMDWMEQEQERGITITSAATTTYW---NKHRINIIDTPGH 165 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~--~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~---~~~~i~liDTPG~ 165 (608)
..+++||..++|||+|+..+. ++.... ...+ .|. -...+.. ....+.||||.|+
T Consensus 5 ~K~VvVGDga~GKT~ll~~~t--~~~fp~~yvPTV------Fdn-------------ys~~v~V~dg~~v~L~LwDTAGq 63 (198)
T KOG0393|consen 5 IKCVVVGDGAVGKTCLLISYT--TNAFPEEYVPTV------FDN-------------YSANVTVDDGKPVELGLWDTAGQ 63 (198)
T ss_pred eEEEEECCCCcCceEEEEEec--cCcCcccccCeE------Ecc-------------ceEEEEecCCCEEEEeeeecCCC
Confidence 578999999999999998774 222111 1111 111 1111222 2345789999999
Q ss_pred CCchHHHHHHHHhcCeEEEEEcCCCCCchh--HHHHHHHHHh--cCCCEEEEEeCCCcC
Q 007325 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQ--SETVWRQADK--YGVPRICFVNKMDRL 220 (608)
Q Consensus 166 ~df~~~~~~~l~~~D~~i~VvDa~~g~~~~--t~~~~~~~~~--~~~p~ivviNK~D~~ 220 (608)
.||..-..-++..+|.++++++........ ....+-.+.. -++|+|+|.+|.|+.
T Consensus 64 edYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr 122 (198)
T KOG0393|consen 64 EDYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLR 122 (198)
T ss_pred cccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhh
Confidence 999775555788889998888766543322 2222233333 369999999999986
No 351
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.28 E-value=9.7e-06 Score=84.05 Aligned_cols=81 Identities=20% Similarity=0.231 Sum_probs=55.7
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEee------------------
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW------------------ 152 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~------------------ 152 (608)
..++|||-||+|||||+|++.... .....+ +=.||+++.+....
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~---a~~aNY---------------PF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~ 64 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAG---AEIANY---------------PFCTIEPNVGVVYVPDCRLDELAEIVKCPPKI 64 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCC---ccccCC---------------CcccccCCeeEEecCchHHHHHHHhcCCCCcE
Confidence 479999999999999999996322 111111 01133333322221
Q ss_pred cCeeEEEEeCCCCCC-------chHHHHHHHHhcCeEEEEEcCC
Q 007325 153 NKHRINIIDTPGHVD-------FTLEVERALRVLDGAICLFDSV 189 (608)
Q Consensus 153 ~~~~i~liDTPG~~d-------f~~~~~~~l~~~D~~i~VvDa~ 189 (608)
-...+.|+|.+|.+. .......-+|.+|++++|||+.
T Consensus 65 ~~~~ve~vDIAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 65 RPAPVEFVDIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred EeeeeEEEEecccCCCcccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 124588999999865 5677888899999999999998
No 352
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.27 E-value=2e-06 Score=90.75 Aligned_cols=128 Identities=20% Similarity=0.234 Sum_probs=74.8
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCC---cccceeeccCCccccch---hhhhh------cceeEeecEEE------
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGR---NYKIGEVHEGTATMDWM---EQEQE------RGITITSAATT------ 149 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~---~~~~g~~~~g~~~~d~~---~~e~~------~giTi~~~~~~------ 149 (608)
.+..+++++|++|+||||++..|....-. ..+.+-+. .|.. ..|+- .|+.+......
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit-----~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~ 209 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLT-----TDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLA 209 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEe-----cccccccHHHHHHHHHHHcCCceEecCCcccHHHH
Confidence 34579999999999999999999743210 01111111 1111 11221 13322211111
Q ss_pred -EeecCeeEEEEeCCCCCC---chHHHHHHHHhcC---eEEEEEcCCCCCchhHHHHHHHHHhcCCCE-------EEEEe
Q 007325 150 -TYWNKHRINIIDTPGHVD---FTLEVERALRVLD---GAICLFDSVAGVEPQSETVWRQADKYGVPR-------ICFVN 215 (608)
Q Consensus 150 -~~~~~~~i~liDTPG~~d---f~~~~~~~l~~~D---~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~-------ivviN 215 (608)
-.+.++.++||||||... +..+....+..++ -.++|++++.+....+..++.+....++|. =++++
T Consensus 210 l~~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~T 289 (374)
T PRK14722 210 LAELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILT 289 (374)
T ss_pred HHHhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEe
Confidence 123578899999999774 3444444554444 348999999877766665665555444432 57889
Q ss_pred CCCcC
Q 007325 216 KMDRL 220 (608)
Q Consensus 216 K~D~~ 220 (608)
|+|-.
T Consensus 290 KlDEt 294 (374)
T PRK14722 290 KLDEA 294 (374)
T ss_pred ccccC
Confidence 99964
No 353
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.26 E-value=3.7e-06 Score=78.57 Aligned_cols=50 Identities=18% Similarity=0.123 Sum_probs=39.9
Q ss_pred HHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHh--cCCCEEEEEeCCCcCC
Q 007325 172 VERALRVLDGAICLFDSVAGVEPQSETVWRQADK--YGVPRICFVNKMDRLG 221 (608)
Q Consensus 172 ~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~--~~~p~ivviNK~D~~~ 221 (608)
+.+++..+|.+++|+|+.++.......+.+.+.. .++|+++|+||+|+..
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~ 53 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVP 53 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCC
Confidence 4678899999999999998766666666666654 3489999999999853
No 354
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=98.25 E-value=5.5e-06 Score=69.31 Aligned_cols=79 Identities=24% Similarity=0.246 Sum_probs=60.8
Q ss_pred EEEEEEeeecCCCceEEEEEEecceeCCCCEEEeCCC--CceeecceEEEeecCceeecCeeecCCEEEE--cCCC--cc
Q 007325 391 AGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANK--GKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DT 464 (608)
Q Consensus 391 ~~~V~K~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~--~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~--~~ 464 (608)
.+.|..++.-++.|.+..+||.+|++++||.|...+. +...+|.+|... ..++++|.|||.+++ .+++ ++
T Consensus 2 r~~V~~v~~~~g~G~vv~G~v~~G~v~~gd~v~~~p~~~~~~~~V~si~~~----~~~~~~a~~G~~v~l~l~~~~~~~v 77 (87)
T cd03697 2 LMPIEDVFSIPGRGTVVTGRIERGTIKVGDEVEIVGFGETLKTTVTGIEMF----RKTLDEAEAGDNVGVLLRGVKREDV 77 (87)
T ss_pred EeeEEEEEeCCCcEEEEEEEECCCCCccCCEEEEeCCCCCceEEEEEEEEC----CcCCCEECCCCEEEEEECCCCHHHc
Confidence 4456666666788999999999999999999987653 455677777532 467899999999998 4442 36
Q ss_pred cccceeccC
Q 007325 465 ITGETLCDA 473 (608)
Q Consensus 465 ~~GdtL~~~ 473 (608)
..|+.|+++
T Consensus 78 ~rG~vl~~~ 86 (87)
T cd03697 78 ERGMVLAKP 86 (87)
T ss_pred CCccEEecC
Confidence 789999875
No 355
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=98.21 E-value=1.1e-05 Score=67.57 Aligned_cols=78 Identities=23% Similarity=0.221 Sum_probs=60.1
Q ss_pred EEEEEEeeecCCCceEEEEEEecceeCCCCEEEeCCC--C--ceeecceEEEeecCceeecCeeecCCEEEE--cCCC--
Q 007325 391 AGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANK--G--KKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK-- 462 (608)
Q Consensus 391 ~~~V~K~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~--~--~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~-- 462 (608)
.+.|..++..+..|.+..+||.+|++++||+++..+. + ...+|.+|... ..++++|.|||.+++ .+++
T Consensus 2 ~~~I~~vf~v~g~GtVv~G~v~~G~v~~g~~v~~~P~~~g~~~~~~V~sI~~~----~~~~~~a~aGd~v~l~l~~i~~~ 77 (87)
T cd03694 2 EFQIDEIYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQDGSFRPVTVKSIHRN----RSPVRVVRAGQSASLALKKIDRS 77 (87)
T ss_pred EEEEEeEEEcCCcceEEEEEEecCEEeCCCEEEECCCCCCCEeEEEEEEEEEC----CeECCEECCCCEEEEEEcCCCHH
Confidence 3456666666788999999999999999999999886 3 46677777532 577999999999998 3433
Q ss_pred cccccceecc
Q 007325 463 DTITGETLCD 472 (608)
Q Consensus 463 ~~~~GdtL~~ 472 (608)
++..|+.||.
T Consensus 78 ~i~~G~vl~~ 87 (87)
T cd03694 78 LLRKGMVLVS 87 (87)
T ss_pred HcCCccEEeC
Confidence 3677888763
No 356
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.19 E-value=1.3e-05 Score=83.22 Aligned_cols=131 Identities=19% Similarity=0.165 Sum_probs=81.1
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCccc-ceeeccCCcccc---chhhhhhcceeEeecEEEEee-------------
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYK-IGEVHEGTATMD---WMEQEQERGITITSAATTTYW------------- 152 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~-~g~~~~g~~~~d---~~~~e~~~giTi~~~~~~~~~------------- 152 (608)
+|...|-|.-|||||||++.|+.+....+. .--.+.|.--.| ......+.-..+...+.+++.
T Consensus 1 ipVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~ 80 (323)
T COG0523 1 IPVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLR 80 (323)
T ss_pred CCEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHh
Confidence 468899999999999999999966552221 111122222222 111222223456667777773
Q ss_pred --cCeeEEEEeCCCCCCchHHHHH--------HHHhcCeEEEEEcCCCCCchhH---HHHHHHHHhcCCCEEEEEeCCCc
Q 007325 153 --NKHRINIIDTPGHVDFTLEVER--------ALRVLDGAICLFDSVAGVEPQS---ETVWRQADKYGVPRICFVNKMDR 219 (608)
Q Consensus 153 --~~~~i~liDTPG~~df~~~~~~--------~l~~~D~~i~VvDa~~g~~~~t---~~~~~~~~~~~~p~ivviNK~D~ 219 (608)
+.....+|-|-|..+-...+.. ..-..|++|-|||+.+...... .....|+... =++++||.|+
T Consensus 81 ~~~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A---D~ivlNK~Dl 157 (323)
T COG0523 81 RRDRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA---DVIVLNKTDL 157 (323)
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC---cEEEEecccC
Confidence 3467899999998874333222 2233488999999997655433 2333444333 3899999999
Q ss_pred CCCc
Q 007325 220 LGAN 223 (608)
Q Consensus 220 ~~~~ 223 (608)
..++
T Consensus 158 v~~~ 161 (323)
T COG0523 158 VDAE 161 (323)
T ss_pred CCHH
Confidence 8865
No 357
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=98.18 E-value=1.6e-05 Score=82.87 Aligned_cols=141 Identities=19% Similarity=0.164 Sum_probs=82.5
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCC-cccceeeccCCccccchhhhhh--cceeEeecEEEEeec------------
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGR-NYKIGEVHEGTATMDWMEQEQE--RGITITSAATTTYWN------------ 153 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~-~~~~g~~~~g~~~~d~~~~e~~--~giTi~~~~~~~~~~------------ 153 (608)
++|...|.|..|||||||+|+++..... ....-..+.|..-.|..-.+.. .-.++...+.++...
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~riaVi~NEfG~v~iD~~ll~~~~~~v~eL~~GCiCCs~~~~l~~~l~~l~~ 82 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLD 82 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhcccCCcccccccCcCCccccHHHHhCcCceEEEECCCEEEEccCchHHHHHHHHHH
Confidence 5789999999999999999999855321 1111112334333443322221 123455566666531
Q ss_pred -------CeeEEEEeCCCCCCchHHHHHHH--------HhcCeEEEEEcCCCCCchhH--HHHHHHHHhcCCCEEEEEeC
Q 007325 154 -------KHRINIIDTPGHVDFTLEVERAL--------RVLDGAICLFDSVAGVEPQS--ETVWRQADKYGVPRICFVNK 216 (608)
Q Consensus 154 -------~~~i~liDTPG~~df~~~~~~~l--------~~~D~~i~VvDa~~g~~~~t--~~~~~~~~~~~~p~ivviNK 216 (608)
.....+|.|.|..+-.......+ -..|++|.|||+........ .....|+.. --++++||
T Consensus 83 ~~~~~~~~~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~---AD~IvlnK 159 (318)
T PRK11537 83 NLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY---ADRILLTK 159 (318)
T ss_pred HHhccCCCCCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh---CCEEEEec
Confidence 25678999999988443332221 12488999999986432211 111223332 34899999
Q ss_pred CCcCCCcHHHHHHHHHH
Q 007325 217 MDRLGANFFRTRDMIVT 233 (608)
Q Consensus 217 ~D~~~~~~~~~~~~i~~ 233 (608)
+|+.... +++.+.+++
T Consensus 160 ~Dl~~~~-~~~~~~l~~ 175 (318)
T PRK11537 160 TDVAGEA-EKLRERLAR 175 (318)
T ss_pred cccCCHH-HHHHHHHHH
Confidence 9998743 445555544
No 358
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=98.17 E-value=4.2e-05 Score=72.93 Aligned_cols=68 Identities=21% Similarity=0.231 Sum_probs=55.9
Q ss_pred cCeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCC
Q 007325 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (608)
Q Consensus 153 ~~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (608)
..+.+.++|||+... .....++..+|.+++|+.+...-.......++.+...++|+.+|+||+|....
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~~vV~N~~~~~~~ 158 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIPVGVVINKYDLNDE 158 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEeCCCCCcc
Confidence 578999999997643 45667889999999999998765666777888888889999999999997543
No 359
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.17 E-value=1.5e-05 Score=73.70 Aligned_cols=59 Identities=20% Similarity=0.211 Sum_probs=40.3
Q ss_pred cCeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCC
Q 007325 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMD 218 (608)
Q Consensus 153 ~~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D 218 (608)
.++.+.||||||.. ......+..+|.+|+|+....+ +...+....-...--++++||+|
T Consensus 90 ~~~D~iiIDtaG~~---~~~~~~~~~Ad~~ivv~tpe~~----D~y~~~k~~~~~~~~~~~~~k~~ 148 (148)
T cd03114 90 AGFDVIIVETVGVG---QSEVDIASMADTTVVVMAPGAG----DDIQAIKAGIMEIADIVVVNKAD 148 (148)
T ss_pred cCCCEEEEECCccC---hhhhhHHHhCCEEEEEECCCch----hHHHHhhhhHhhhcCEEEEeCCC
Confidence 46899999999964 3445689999999999877622 22222222333445589999998
No 360
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=98.16 E-value=3.5e-05 Score=81.22 Aligned_cols=146 Identities=18% Similarity=0.132 Sum_probs=82.8
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCC-cccceeeccCCccccchhhhhh--------cceeEeecEEEEee------
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGR-NYKIGEVHEGTATMDWMEQEQE--------RGITITSAATTTYW------ 152 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~-~~~~g~~~~g~~~~d~~~~e~~--------~giTi~~~~~~~~~------ 152 (608)
.++|...|.|..|||||||+++++..... ....-..+.|..-.|..-.... .-+.+...+.++..
T Consensus 2 ~~ipv~iltGFLGaGKTTll~~ll~~~~~~~iavi~Ne~G~~~ID~~ll~~~~~~~~~~~~v~el~nGCiCCs~~~dl~~ 81 (341)
T TIGR02475 2 AKIPVTIVTGFLGAGKTTLIRHLLQNAAGRRIAVIVNEFGDLGIDGEILKACGIEGCSEENIVELANGCICCTVADDFIP 81 (341)
T ss_pred CccCEEEEEECCCCCHHHHHHHHHhccCCCcEEEEECCCccccchHHHHhccccccCCcceEEEeCCCCccccCcHHHHH
Confidence 35788999999999999999999864322 1111111333333333222111 12334444444432
Q ss_pred ---------cCeeEEEEeCCCCCCchHHHHHH-------HHhcCeEEEEEcCCCCCchh---------------------
Q 007325 153 ---------NKHRINIIDTPGHVDFTLEVERA-------LRVLDGAICLFDSVAGVEPQ--------------------- 195 (608)
Q Consensus 153 ---------~~~~i~liDTPG~~df~~~~~~~-------l~~~D~~i~VvDa~~g~~~~--------------------- 195 (608)
......+|.|.|..+....+... .-..|++|.|||+.......
T Consensus 82 ~l~~l~~~~~~~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (341)
T TIGR02475 82 TMTKLLARRQRPDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHE 161 (341)
T ss_pred HHHHHHhccCCCCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhcccccccccc
Confidence 23578999999998854433322 12458899999998543210
Q ss_pred ---HHHHHHHHHhcCCCEEEEEeCCCcCCCc-HHHHHHHHHHhhC
Q 007325 196 ---SETVWRQADKYGVPRICFVNKMDRLGAN-FFRTRDMIVTNLG 236 (608)
Q Consensus 196 ---t~~~~~~~~~~~~p~ivviNK~D~~~~~-~~~~~~~i~~~l~ 236 (608)
......|+. .--++++||+|+...+ ++++.+.+++...
T Consensus 162 ~~~~~~~~~Qi~---~AD~IvlnK~Dl~~~~~l~~~~~~l~~~~~ 203 (341)
T TIGR02475 162 TPLEELFEDQLA---CADLVILNKADLLDAAGLARVRAEIAAELP 203 (341)
T ss_pred chHHHHHHHHHH---hCCEEEEeccccCCHHHHHHHHHHHHHhCC
Confidence 001122332 2348999999998753 4555555555443
No 361
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.15 E-value=0.00017 Score=78.19 Aligned_cols=127 Identities=21% Similarity=0.298 Sum_probs=66.8
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCc-ccceeeccCC---ccccchh-hhhhcceeEeecEEE----------E-ee
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRN-YKIGEVHEGT---ATMDWME-QEQERGITITSAATT----------T-YW 152 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~-~~~g~~~~g~---~~~d~~~-~e~~~giTi~~~~~~----------~-~~ 152 (608)
...+|.++|.+|+||||++..|....... .+..-++..+ ...+... .-...++.+...... + ..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 35689999999999999999986432211 1111111100 0000000 011112222111000 0 01
Q ss_pred cCeeEEEEeCCCCCCchHHHH------HHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhc--CCCE-EEEEeCCCcC
Q 007325 153 NKHRINIIDTPGHVDFTLEVE------RALRVLDGAICLFDSVAGVEPQSETVWRQADKY--GVPR-ICFVNKMDRL 220 (608)
Q Consensus 153 ~~~~i~liDTPG~~df~~~~~------~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~--~~p~-ivviNK~D~~ 220 (608)
.++.+.||||||......... ..+...|.+++|+|+..+. ..++++..+ .+++ -+|+||+|-.
T Consensus 174 ~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq-----~av~~a~~F~~~l~i~gvIlTKlD~~ 245 (437)
T PRK00771 174 KKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ-----QAKNQAKAFHEAVGIGGIIITKLDGT 245 (437)
T ss_pred hcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH-----HHHHHHHHHHhcCCCCEEEEecccCC
Confidence 345899999999766543322 2344569999999998762 222333332 2444 5788999963
No 362
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.14 E-value=7.2e-06 Score=79.14 Aligned_cols=55 Identities=13% Similarity=-0.135 Sum_probs=41.3
Q ss_pred CCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCC
Q 007325 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (608)
Q Consensus 165 ~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~ 221 (608)
+..|...+..+++.+|++++|+|+.+........++. ...++|+++|+||+|+..
T Consensus 21 ~~~~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~~--~~~~~~~ilV~NK~Dl~~ 75 (190)
T cd01855 21 EDFILNLLSSISPKKALVVHVVDIFDFPGSLIPRLRL--FGGNNPVILVGNKIDLLP 75 (190)
T ss_pred HHHHHHHHHhcccCCcEEEEEEECccCCCccchhHHH--hcCCCcEEEEEEchhcCC
Confidence 3336888888999999999999998755444444322 235789999999999864
No 363
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=98.13 E-value=5.2e-05 Score=71.94 Aligned_cols=82 Identities=16% Similarity=0.087 Sum_probs=61.5
Q ss_pred eEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCC-EEEEEeCCCcCCCcHHHHHHHHHHh
Q 007325 156 RINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGANFFRTRDMIVTN 234 (608)
Q Consensus 156 ~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p-~ivviNK~D~~~~~~~~~~~~i~~~ 234 (608)
.+.+||||+..+. ....++..+|.+|+|+++...-...+...++.+...+.+ ..+|+|++|.......+.++++++.
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~~~~~ 141 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPDMVEGGDMVEDIEEI 141 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCcccccchhhHHHHHHHH
Confidence 7999999987553 566788999999999999876666666667777666665 4688999987655455556778887
Q ss_pred hCCcc
Q 007325 235 LGAKP 239 (608)
Q Consensus 235 l~~~~ 239 (608)
++...
T Consensus 142 ~~~~v 146 (179)
T cd02036 142 LGVPL 146 (179)
T ss_pred hCCCE
Confidence 77643
No 364
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.13 E-value=1.4e-06 Score=80.96 Aligned_cols=65 Identities=23% Similarity=0.307 Sum_probs=35.1
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCc
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 168 (608)
+.++++|++|+|||||+|+|+... ..+.+.+.. ...+-+.+|.......+ .....+|||||+.+|
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~--~~~t~~is~--------~~~rGkHTTt~~~l~~l---~~g~~iIDTPGf~~~ 100 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEA--KQKTGEISE--------KTGRGKHTTTHRELFPL---PDGGYIIDTPGFRSF 100 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS------S----------------------SEEEEEE---TTSEEEECSHHHHT-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc--chhhhhhhc--------ccCCCcccCCCeeEEec---CCCcEEEECCCCCcc
Confidence 689999999999999999997321 122222211 01122334554444444 234689999998765
No 365
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.13 E-value=2.2e-05 Score=74.50 Aligned_cols=67 Identities=16% Similarity=0.283 Sum_probs=42.5
Q ss_pred cCeeEEEEeCCCCCCchHHHHHHH------HhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCC
Q 007325 153 NKHRINIIDTPGHVDFTLEVERAL------RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (608)
Q Consensus 153 ~~~~i~liDTPG~~df~~~~~~~l------~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~ 221 (608)
.++.+.++||||...+.......+ ...|.+++|+|+..+.. .....+......++ .-+|+||+|...
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~-~~~~~~~~~~~~~~-~~viltk~D~~~ 153 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD-AVNQAKAFNEALGI-TGVILTKLDGDA 153 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH-HHHHHHHHHhhCCC-CEEEEECCcCCC
Confidence 467799999999864433332222 23799999999975432 22334444444553 567889999754
No 366
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=4.3e-06 Score=77.93 Aligned_cols=113 Identities=21% Similarity=0.175 Sum_probs=79.5
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEe----ecCeeEEEEeCCC
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY----WNKHRINIIDTPG 164 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~----~~~~~i~liDTPG 164 (608)
-+..++++|..+.||||++++.+ +|....... .|+......+. .+..+++.|||.|
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~l--tgeFe~~y~------------------at~Gv~~~pl~f~tn~g~irf~~wdtag 68 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHL--TGEFEKTYP------------------ATLGVEVHPLLFDTNRGQIRFNVWDTAG 68 (216)
T ss_pred ceEEEEEecCCcccccchhhhhh--cccceeccc------------------CcceeEEeeeeeecccCcEEEEeeeccc
Confidence 36799999999999999999998 443332221 13333322222 2447899999999
Q ss_pred CCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHH--H-HhcCCCEEEEEeCCCcCC
Q 007325 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQ--A-DKYGVPRICFVNKMDRLG 221 (608)
Q Consensus 165 ~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~--~-~~~~~p~ivviNK~D~~~ 221 (608)
+..|......++-...+||+++|...-+..+...-|.. + ...++|++++.||.|-..
T Consensus 69 qEk~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~ 128 (216)
T KOG0096|consen 69 QEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKA 128 (216)
T ss_pred ceeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceeccc
Confidence 99988777777777789999999986655544444421 2 234699999999999653
No 367
>PRK10867 signal recognition particle protein; Provisional
Probab=98.11 E-value=0.00022 Score=77.16 Aligned_cols=212 Identities=17% Similarity=0.205 Sum_probs=99.8
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhh----CCcccceeeccCC-ccccchh-hhhhcceeEeecE-----EE--------E
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYT----GRNYKIGEVHEGT-ATMDWME-QEQERGITITSAA-----TT--------T 150 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~----g~~~~~g~~~~g~-~~~d~~~-~e~~~giTi~~~~-----~~--------~ 150 (608)
...|.++|.+|+||||++-.|.... |........+... ...+... .-...|+.+.... .. .
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~a 179 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEEA 179 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHHH
Confidence 4689999999999999888875322 2111111111100 0000000 0111222211110 00 0
Q ss_pred eecCeeEEEEeCCCCCCchH----HHHHHHH--hcCeEEEEEcCCCCCchhHHHHHHHHHhcCCC-EEEEEeCCCcCCCc
Q 007325 151 YWNKHRINIIDTPGHVDFTL----EVERALR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGAN 223 (608)
Q Consensus 151 ~~~~~~i~liDTPG~~df~~----~~~~~l~--~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p-~ivviNK~D~~~~~ 223 (608)
...++.+.||||||...... ++..... ..|.+++|+|+..| .......+.... .++ .-+|+||+|-.. .
T Consensus 180 ~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g--q~av~~a~~F~~-~~~i~giIlTKlD~~~-r 255 (433)
T PRK10867 180 KENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG--QDAVNTAKAFNE-ALGLTGVILTKLDGDA-R 255 (433)
T ss_pred HhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH--HHHHHHHHHHHh-hCCCCEEEEeCccCcc-c
Confidence 11457899999999654322 2222222 34788999999754 112222222221 233 357889999532 1
Q ss_pred HHHHHHHHHHhhCCccEEEeccCCCCCCeeeEEecccceeEEecCcCCCceeeeecC-cHhHHHHHHH--HHHHHHHHHH
Q 007325 224 FFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDI-PANLQKMAQE--YRSQMIETIV 300 (608)
Q Consensus 224 ~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~--~r~~l~e~~~ 300 (608)
...+-.+...++.++..+ +.+++.. |+ ++| |+.+....-. .-..|+|.+.
T Consensus 256 -gG~alsi~~~~~~PI~fi----g~Ge~v~---DL-------------------e~f~p~~~~~~ilgmgD~~~l~e~~~ 308 (433)
T PRK10867 256 -GGAALSIRAVTGKPIKFI----GTGEKLD---DL-------------------EPFHPDRMASRILGMGDVLSLIEKAQ 308 (433)
T ss_pred -ccHHHHHHHHHCcCEEEE----eCCCccc---cC-------------------ccCCHHHHHHHHhCCCChHHHHHHHH
Confidence 223445555665432211 1111110 11 111 2222222111 0124455444
Q ss_pred hh-c----HHHHHHHhcCCCCCHHHHHHHHHhhcccCc
Q 007325 301 EL-D----DEAMESYLEGNEPDEETIKKLIRKGTIAGS 333 (608)
Q Consensus 301 ~~-d----d~l~e~~l~~~~~~~~el~~~l~~~~~~~~ 333 (608)
+. | ++++++...| .++-+++++.++.....|.
T Consensus 309 ~~~~~~~~~~~~~~~~~g-~f~l~d~~~q~~~~~kmG~ 345 (433)
T PRK10867 309 EVVDEEKAEKLAKKLKKG-KFDLEDFLEQLQQMKKMGG 345 (433)
T ss_pred HhhCHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 32 2 3456677765 7888999888877666553
No 368
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.11 E-value=5.1e-05 Score=79.12 Aligned_cols=145 Identities=17% Similarity=0.126 Sum_probs=74.3
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCcc----ccch-hhhhhcceeEeecEE-------------EE
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTAT----MDWM-EQEQERGITITSAAT-------------TT 150 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~----~d~~-~~e~~~giTi~~~~~-------------~~ 150 (608)
....|+++|.+|+||||++..|............+.+..++ .+.. .....+++.+..... ..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999996432211111111111000 0000 111223333221100 00
Q ss_pred eecCeeEEEEeCCCCCCch----HHHHHHHHh--------cCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCC
Q 007325 151 YWNKHRINIIDTPGHVDFT----LEVERALRV--------LDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMD 218 (608)
Q Consensus 151 ~~~~~~i~liDTPG~~df~----~~~~~~l~~--------~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D 218 (608)
...++.+.||||||..... .++....+. .+..++|+|++.+..... .. +.....--+.-+|+||+|
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~-~a-~~f~~~~~~~giIlTKlD 270 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALS-QA-KAFHEAVGLTGIILTKLD 270 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHH-HH-HHHHhhCCCCEEEEECCC
Confidence 1256889999999976533 344443332 467899999997543322 22 221111124478999999
Q ss_pred cCCCcHHHHHHHHHHhhCC
Q 007325 219 RLGANFFRTRDMIVTNLGA 237 (608)
Q Consensus 219 ~~~~~~~~~~~~i~~~l~~ 237 (608)
.. +....+++.. ..++.
T Consensus 271 ~t-~~~G~~l~~~-~~~~~ 287 (318)
T PRK10416 271 GT-AKGGVVFAIA-DELGI 287 (318)
T ss_pred CC-CCccHHHHHH-HHHCC
Confidence 43 3333344433 33344
No 369
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.09 E-value=5.6e-06 Score=77.35 Aligned_cols=56 Identities=23% Similarity=0.256 Sum_probs=36.6
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCC
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 165 (608)
..+|+++|.+|+|||||+|+|+.... ... ....|.|.......+ +..+.++||||.
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~--~~~---------------~~~~g~T~~~~~~~~---~~~~~liDtPGi 157 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKV--CKV---------------APIPGETKVWQYITL---MKRIYLIDCPGV 157 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCc--eee---------------CCCCCeeEeEEEEEc---CCCEEEEECcCC
Confidence 35799999999999999999962211 111 112455555443332 345899999994
No 370
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.08 E-value=7.6e-06 Score=78.67 Aligned_cols=121 Identities=15% Similarity=0.174 Sum_probs=81.1
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHh--hCCcccceeeccCCccccchhhhhhcceeEeecEEEEee-cCeeEEEEeCCCCC
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFY--TGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPGHV 166 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~--~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPG~~ 166 (608)
.+.|.++|.+|+|||++=..+..+ +.... ..|-|++....++.+ ++..+++||+.|+.
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~-------------------rlg~tidveHsh~RflGnl~LnlwDcGgqe 64 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTR-------------------RLGATIDVEHSHVRFLGNLVLNLWDCGGQE 64 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhh-------------------ccCCcceeeehhhhhhhhheeehhccCCcH
Confidence 478999999999999998777521 11111 234477777666665 44789999999998
Q ss_pred CchHHHHH-----HHHhcCeEEEEEcCCCCCchhHHH----HHHHHHhc--CCCEEEEEeCCCcCCCcHHHHHH
Q 007325 167 DFTLEVER-----ALRVLDGAICLFDSVAGVEPQSET----VWRQADKY--GVPRICFVNKMDRLGANFFRTRD 229 (608)
Q Consensus 167 df~~~~~~-----~l~~~D~~i~VvDa~~g~~~~t~~----~~~~~~~~--~~p~ivviNK~D~~~~~~~~~~~ 229 (608)
.|.....+ .++..+..+.|+|+...-...+.. .++.+.+. ...+++.+.|+|+...+..+.+-
T Consensus 65 ~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if 138 (295)
T KOG3886|consen 65 EFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIF 138 (295)
T ss_pred HHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHHHHH
Confidence 77655444 577889999999998532333322 23333332 34567889999998877544433
No 371
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.08 E-value=9.7e-06 Score=83.09 Aligned_cols=56 Identities=23% Similarity=0.361 Sum_probs=44.4
Q ss_pred CCCCC-chHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcC
Q 007325 163 PGHVD-FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (608)
Q Consensus 163 PG~~d-f~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~ 220 (608)
|||.. ...++...+..+|.+|+|+|+..+.......+.+.+ .+.|+++|+||+|+.
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l--~~kp~IiVlNK~DL~ 61 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR--GNKPRLIVLNKADLA 61 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH--CCCCEEEEEEccccC
Confidence 77753 567788899999999999999877666555554444 378999999999985
No 372
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.05 E-value=5.2e-06 Score=88.29 Aligned_cols=131 Identities=10% Similarity=0.144 Sum_probs=72.3
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchH
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~ 170 (608)
++++++|.+|+|||||+|+|+.......... + ....+|+|.......+ +..+.++||||.....
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~------~------~s~~pgtT~~~~~~~~---~~~~~l~DtPG~~~~~- 218 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVI------T------TSPFPGTTLDLIEIPL---DDGHSLYDTPGIINSH- 218 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCccee------e------ecCCCCeEeeEEEEEe---CCCCEEEECCCCCChh-
Confidence 6899999999999999999985432111100 1 1223567776554443 2346899999987532
Q ss_pred HHHHHH-----------HhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCC-cHHHHHHHHHHhhCC
Q 007325 171 EVERAL-----------RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA-NFFRTRDMIVTNLGA 237 (608)
Q Consensus 171 ~~~~~l-----------~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~-~~~~~~~~i~~~l~~ 237 (608)
++...+ .......+.+|..+.+.......+..+...+..+.++++|.+.... +.++..+-+++.+|.
T Consensus 219 ~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~~~~~~~~~~~~~~~~h~t~~~~a~~~~~~~~g~ 297 (360)
T TIGR03597 219 QMAHYLDKKDLKYITPKKEIKPKTYQLNPNQTLFLGGLARFDYLKGEKTSFTFYVSNELNIHRTKLENADELYNKHLGN 297 (360)
T ss_pred HhhhhcCHHHHhhcCCCCccCceEEEeCCCCEEEEceEEEEEEecCCceEEEEEccCCceeEeechhhhHHHHHhhcCC
Confidence 111111 1235566666665433222221122222334556677777776543 445555555555543
No 373
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.04 E-value=1.5e-05 Score=75.67 Aligned_cols=57 Identities=23% Similarity=0.303 Sum_probs=43.0
Q ss_pred CCCCC-CchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcC
Q 007325 162 TPGHV-DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (608)
Q Consensus 162 TPG~~-df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~ 220 (608)
-|||- ....++...+..+|.+++|+|+.++.......++..+ .+.|+++|+||+|+.
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~~ilVlNK~Dl~ 59 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKPRIIVLNKADLA 59 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCCEEEEEehhhcC
Confidence 36653 3567788899999999999999977665544444433 368999999999985
No 374
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.02 E-value=5.6e-05 Score=77.15 Aligned_cols=126 Identities=16% Similarity=0.160 Sum_probs=67.5
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcc-cceeeccCCccccch---hhh------hhcceeEeecEE-----E---
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNY-KIGEVHEGTATMDWM---EQE------QERGITITSAAT-----T--- 149 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~-~~g~~~~g~~~~d~~---~~e------~~~giTi~~~~~-----~--- 149 (608)
...+.|+++|.+|+||||++..|........ +..-++ .|.. ..| ...|+.+-.... .
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~-----~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~ 144 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAA-----GDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAF 144 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe-----CCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHH
Confidence 3457999999999999999999863321111 111111 1110 011 222322211000 0
Q ss_pred -----EeecCeeEEEEeCCCCCCchHHHH----HHH---H-----hcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEE
Q 007325 150 -----TYWNKHRINIIDTPGHVDFTLEVE----RAL---R-----VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRIC 212 (608)
Q Consensus 150 -----~~~~~~~i~liDTPG~~df~~~~~----~~l---~-----~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~iv 212 (608)
....++.+.||||||......... ... . ..|..++|+|+..+.... ..........+ +.-+
T Consensus 145 ~~l~~~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~-~~~~~f~~~~~-~~g~ 222 (272)
T TIGR00064 145 DAIQKAKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNAL-EQAKVFNEAVG-LTGI 222 (272)
T ss_pred HHHHHHHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHH-HHHHHHHhhCC-CCEE
Confidence 012568999999999865433322 222 2 268999999998643322 12222222222 4578
Q ss_pred EEeCCCcC
Q 007325 213 FVNKMDRL 220 (608)
Q Consensus 213 viNK~D~~ 220 (608)
++||+|-.
T Consensus 223 IlTKlDe~ 230 (272)
T TIGR00064 223 ILTKLDGT 230 (272)
T ss_pred EEEccCCC
Confidence 89999964
No 375
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=98.00 E-value=4.5e-05 Score=68.78 Aligned_cols=114 Identities=19% Similarity=0.190 Sum_probs=75.8
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchH
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~ 170 (608)
..|+++|.+..|||||+-..+.... | .+-++..|+..--....+.-....+.+||..|+.+|..
T Consensus 21 lkv~llGD~qiGKTs~mvkYV~~~~---------------d-e~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n 84 (205)
T KOG1673|consen 21 LKVGLLGDAQIGKTSLMVKYVQNEY---------------D-EEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFIN 84 (205)
T ss_pred EEEEeecccccCceeeehhhhcchh---------------H-HHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhc
Confidence 6899999999999999987751111 0 11223334433333333332345678999999999999
Q ss_pred HHHHHHHhcCeEEEEEcCCCCCchhHH-HHHHHHHhcCCCE--EEEEeCCCcC
Q 007325 171 EVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADKYGVPR--ICFVNKMDRL 220 (608)
Q Consensus 171 ~~~~~l~~~D~~i~VvDa~~g~~~~t~-~~~~~~~~~~~p~--ivviNK~D~~ 220 (608)
...-+...+-++++++|-+..-.-... +..++++..+... |+|.+|-|..
T Consensus 85 ~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~f 137 (205)
T KOG1673|consen 85 MLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLF 137 (205)
T ss_pred cCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhh
Confidence 988888888889999999865443333 3446676655432 5778998853
No 376
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=98.00 E-value=0.0006 Score=73.72 Aligned_cols=81 Identities=16% Similarity=0.158 Sum_probs=44.9
Q ss_pred cCeeEEEEeCCCCCCchHHHHHHH------HhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCE-EEEEeCCCcCCCcHH
Q 007325 153 NKHRINIIDTPGHVDFTLEVERAL------RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLGANFF 225 (608)
Q Consensus 153 ~~~~i~liDTPG~~df~~~~~~~l------~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~-ivviNK~D~~~~~~~ 225 (608)
.++.+.|+||||...........+ ...|.+++|+|+..+. ......+... ..+++ =+++||+|-.. . .
T Consensus 181 ~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq--~~~~~a~~f~-~~v~i~giIlTKlD~~~-~-~ 255 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ--DAVNTAKTFN-ERLGLTGVVLTKLDGDA-R-G 255 (428)
T ss_pred cCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH--HHHHHHHHHH-hhCCCCEEEEeCccCcc-c-c
Confidence 457899999999654322222221 2358899999997542 2222222222 12333 57799999532 1 1
Q ss_pred HHHHHHHHhhCCc
Q 007325 226 RTRDMIVTNLGAK 238 (608)
Q Consensus 226 ~~~~~i~~~l~~~ 238 (608)
..+-.+...++.+
T Consensus 256 G~~lsi~~~~~~P 268 (428)
T TIGR00959 256 GAALSVRSVTGKP 268 (428)
T ss_pred cHHHHHHHHHCcC
Confidence 2345555566643
No 377
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.99 E-value=3.2e-05 Score=74.96 Aligned_cols=123 Identities=19% Similarity=0.207 Sum_probs=65.6
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCccc-ceeeccCCccccchh---hh------hhcceeEeecE-------------
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYK-IGEVHEGTATMDWME---QE------QERGITITSAA------------- 147 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~-~g~~~~g~~~~d~~~---~e------~~~giTi~~~~------------- 147 (608)
+.|++||++|+||||.+-.|........+ .+-+ ..|... .| +.-|+.+....
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~li-----s~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l 76 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALI-----SADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREAL 76 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE-----EESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceee-----cCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHH
Confidence 47899999999999999999643221111 1111 111110 11 11122111100
Q ss_pred EEEeecCeeEEEEeCCCCCCchHH----HHHHHH--hcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcC
Q 007325 148 TTTYWNKHRINIIDTPGHVDFTLE----VERALR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (608)
Q Consensus 148 ~~~~~~~~~i~liDTPG~~df~~~----~~~~l~--~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~ 220 (608)
..+..+++.+.||||||......+ +...+. ..+-+++|+|++.+..... .........++. =++++|+|-.
T Consensus 77 ~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~-~~~~~~~~~~~~-~lIlTKlDet 153 (196)
T PF00448_consen 77 EKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLE-QALAFYEAFGID-GLILTKLDET 153 (196)
T ss_dssp HHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHH-HHHHHHHHSSTC-EEEEESTTSS
T ss_pred HHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHH-HHHHHhhcccCc-eEEEEeecCC
Confidence 000113578999999997664333 333222 2477899999997643322 344444444444 5669999964
No 378
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.99 E-value=1.9e-05 Score=73.65 Aligned_cols=42 Identities=19% Similarity=0.160 Sum_probs=32.9
Q ss_pred CeEEEEEcCCCCCchhHHHHH-HHHHhcCCCEEEEEeCCCcCC
Q 007325 180 DGAICLFDSVAGVEPQSETVW-RQADKYGVPRICFVNKMDRLG 221 (608)
Q Consensus 180 D~~i~VvDa~~g~~~~t~~~~-~~~~~~~~p~ivviNK~D~~~ 221 (608)
|.+++|+|+.++.......+. ..+...++|+++|+||+|+..
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~ 43 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVP 43 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCC
Confidence 789999999887665555444 456667899999999999853
No 379
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.98 E-value=1.1e-05 Score=76.52 Aligned_cols=56 Identities=14% Similarity=0.322 Sum_probs=38.7
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCC
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 165 (608)
...++++|.+|+|||||+|+|+.... .. ....+|+|.......+ +..+.++||||.
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~--~~---------------~~~~pg~T~~~~~~~~---~~~~~l~DtPGi 172 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRA--CN---------------VGATPGVTKSMQEVHL---DKKVKLLDSPGI 172 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccc--ce---------------ecCCCCeEcceEEEEe---CCCEEEEECcCC
Confidence 45899999999999999999962211 11 1123566776554443 346899999994
No 380
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.97 E-value=3.5e-05 Score=78.79 Aligned_cols=134 Identities=23% Similarity=0.203 Sum_probs=88.5
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeec---cCCccccchhhhhhcceeEeecE-EEEe-------------
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVH---EGTATMDWMEQEQERGITITSAA-TTTY------------- 151 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~---~g~~~~d~~~~e~~~giTi~~~~-~~~~------------- 151 (608)
.-|-|.++|.-..||||+++.|+.+.-.-.++|.-. .-..+|--..++.-.|-++.... ..+.
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf 136 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF 136 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHH
Confidence 457899999999999999999985433222222110 00011222223333333322210 0000
Q ss_pred ----ec---CeeEEEEeCCCCC-----------CchHHHHHHHHhcCeEEEEEcCCC-CCchhHHHHHHHHHhcCCCEEE
Q 007325 152 ----WN---KHRINIIDTPGHV-----------DFTLEVERALRVLDGAICLFDSVA-GVEPQSETVWRQADKYGVPRIC 212 (608)
Q Consensus 152 ----~~---~~~i~liDTPG~~-----------df~~~~~~~l~~~D~~i~VvDa~~-g~~~~t~~~~~~~~~~~~p~iv 212 (608)
.. =..+++|||||.. ||..-.......+|.+++++|+.. .+.....+++..++...-.+=|
T Consensus 137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~EdkiRV 216 (532)
T KOG1954|consen 137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHEDKIRV 216 (532)
T ss_pred HHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCcceeEE
Confidence 00 1359999999953 588888889999999999999974 4677888899999888778889
Q ss_pred EEeCCCcCCC
Q 007325 213 FVNKMDRLGA 222 (608)
Q Consensus 213 viNK~D~~~~ 222 (608)
|+||.|....
T Consensus 217 VLNKADqVdt 226 (532)
T KOG1954|consen 217 VLNKADQVDT 226 (532)
T ss_pred EeccccccCH
Confidence 9999998764
No 381
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.95 E-value=1e-05 Score=78.02 Aligned_cols=62 Identities=18% Similarity=0.201 Sum_probs=40.8
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCccc-ceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCC
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYK-IGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~-~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 165 (608)
.+++++|.+|+|||||+|+|+.......+ .+. ......+|+|.......+. ..+.||||||+
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~----------~~~~~~~gtT~~~~~~~~~---~~~~~~DtPG~ 190 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDL----------LTTSPIPGTTLDLIKIPLG---NGKKLYDTPGI 190 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcccccccccc----------cccCCCCCeeeeeEEEecC---CCCEEEeCcCC
Confidence 58999999999999999999743221100 000 0112235778877666553 25899999995
No 382
>PRK12288 GTPase RsgA; Reviewed
Probab=97.95 E-value=1.1e-05 Score=85.03 Aligned_cols=66 Identities=18% Similarity=0.231 Sum_probs=41.7
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCch
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~ 169 (608)
..++|+|.+|+|||||+|+|+.. ...+.+.+.. ...+-+.+|.......+..+ ..||||||+..|.
T Consensus 206 ki~~~vG~sgVGKSTLiN~Ll~~--~~~~t~~is~--------~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~ 271 (347)
T PRK12288 206 RISIFVGQSGVGKSSLINALLPE--AEILVGDVSD--------NSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG 271 (347)
T ss_pred CCEEEECCCCCCHHHHHHHhccc--cceeeccccC--------cCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence 35899999999999999999722 1222233211 11223445666665555333 3599999998764
No 383
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.95 E-value=3e-05 Score=81.62 Aligned_cols=81 Identities=16% Similarity=0.075 Sum_probs=56.2
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcc-cceeeccCCccccchhhhhhcceeEeecEEEEeec----------------
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNY-KIGEVHEGTATMDWMEQEQERGITITSAATTTYWN---------------- 153 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~-~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~---------------- 153 (608)
..++|||.+|+|||||+|+|. +... ..... + -.|+....+.+...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT---~~~~~~~a~y-p--------------ftTi~p~~g~v~v~d~r~d~L~~~~~~~~~ 64 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATT---NLLGNEAANP-P--------------FTTIEPNAGVVNPSDPRLDLLAIYIKPEKV 64 (368)
T ss_pred ceEEEECCCCCChHHHHHHHh---CCCccccCCC-C--------------CCCCCCceeEEEechhHHHHHHHHhCCcCc
Confidence 478999999999999999995 2222 11111 1 11333333333332
Q ss_pred -CeeEEEEeCCCCCC-------chHHHHHHHHhcCeEEEEEcCC
Q 007325 154 -KHRINIIDTPGHVD-------FTLEVERALRVLDGAICLFDSV 189 (608)
Q Consensus 154 -~~~i~liDTPG~~d-------f~~~~~~~l~~~D~~i~VvDa~ 189 (608)
...+.++|.||... +.......++.+|++++|||+.
T Consensus 65 ~~a~i~~~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 65 PPTTTEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred CCceEEEEeccccccchhcccCcchHHHHHHHhCCEEEEEEeCC
Confidence 24689999999865 5567888999999999999996
No 384
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=97.95 E-value=7.9e-05 Score=61.87 Aligned_cols=73 Identities=19% Similarity=0.269 Sum_probs=57.2
Q ss_pred EEEeeecCCCceEEEEEEecceeCCCCEEEeCCCC---ceeecceEEEeecCceeecCeeecCCEEEE--cCCCcccccc
Q 007325 394 AFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKG---KKERIGRLLEMHANSREDVKVALAGDIIAL--AGLKDTITGE 468 (608)
Q Consensus 394 V~K~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~---~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~~~~~Gd 468 (608)
|..++.....|.++.+||-+|++++|+.+...+.+ ...+|.+|... ..++++|.+|+-|+| .+++++..||
T Consensus 5 V~~vf~~~~~g~vag~kV~~G~l~~g~~v~vlr~~~~~~~g~i~sl~~~----~~~v~~a~~G~ecgi~l~~~~d~~~Gd 80 (84)
T cd03692 5 VRAVFKISKVGNIAGCYVTDGKIKRNAKVRVLRNGEVIYEGKISSLKRF----KDDVKEVKKGYECGITLENFNDIKVGD 80 (84)
T ss_pred EEEEEECCCCcEEEEEEEEECEEeCCCEEEEEcCCCEEEEEEEEEEEEc----CcccCEECCCCEEEEEEeCcccCCCCC
Confidence 34444334568999999999999999999998887 44466666533 577999999999998 4666788898
Q ss_pred ee
Q 007325 469 TL 470 (608)
Q Consensus 469 tL 470 (608)
+|
T Consensus 81 vi 82 (84)
T cd03692 81 II 82 (84)
T ss_pred EE
Confidence 86
No 385
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.93 E-value=2.2e-05 Score=75.00 Aligned_cols=140 Identities=20% Similarity=0.209 Sum_probs=73.8
Q ss_pred eeEEEEcCCCCchHHHHHHHHH-hh-CCcccceeeccCCccccchhhhhhcc---eeEeecEEEEee-------------
Q 007325 91 RNIGIMAHIDAGKTTTTERVLF-YT-GRNYKIGEVHEGTATMDWMEQEQERG---ITITSAATTTYW------------- 152 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~-~~-g~~~~~g~~~~g~~~~d~~~~e~~~g---iTi~~~~~~~~~------------- 152 (608)
|.+.|.|..|||||||+++++. .. +.....-..+.|....|....+.. | ..+...+..+..
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~-~~~v~~l~~gcicc~~~~~~~~~l~~l~~ 79 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQED-GVPVVELNNGCICCTLRDDLVEALRRLLR 79 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTT-T-EEEEECTTTESS-TTS-HHHHHHHHCC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhccc-ceEEEEecCCCcccccHHHHHHHHHHHHH
Confidence 4688999999999999999993 22 211111122333332333222222 2 233333443331
Q ss_pred -c--CeeEEEEeCCCCCCchHH-----HHHHHHhcCeEEEEEcCCCCCc-hhHHHHHHHHHhcCCCEEEEEeCCCcCCCc
Q 007325 153 -N--KHRINIIDTPGHVDFTLE-----VERALRVLDGAICLFDSVAGVE-PQSETVWRQADKYGVPRICFVNKMDRLGAN 223 (608)
Q Consensus 153 -~--~~~i~liDTPG~~df~~~-----~~~~l~~~D~~i~VvDa~~g~~-~~t~~~~~~~~~~~~p~ivviNK~D~~~~~ 223 (608)
. +....+|-|.|..+.... .....-..+.+|.|||+..-.. ......+ ..+...--++++||+|+...+
T Consensus 80 ~~~~~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~--~~Qi~~ADvIvlnK~D~~~~~ 157 (178)
T PF02492_consen 80 EYEERPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELL--REQIAFADVIVLNKIDLVSDE 157 (178)
T ss_dssp CCHGC-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHH--HHHHCT-SEEEEE-GGGHHHH
T ss_pred hcCCCcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhh--hhcchhcCEEEEeccccCChh
Confidence 2 457899999997764333 1122334589999999965311 1111111 122233448999999998765
Q ss_pred --HHHHHHHHHH
Q 007325 224 --FFRTRDMIVT 233 (608)
Q Consensus 224 --~~~~~~~i~~ 233 (608)
.++..+.+++
T Consensus 158 ~~i~~~~~~ir~ 169 (178)
T PF02492_consen 158 QKIERVREMIRE 169 (178)
T ss_dssp --HHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 2444444444
No 386
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.92 E-value=6.7e-05 Score=74.45 Aligned_cols=88 Identities=14% Similarity=0.083 Sum_probs=53.9
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEee---cCeeEEEEeCCC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW---NKHRINIIDTPG 164 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~---~~~~i~liDTPG 164 (608)
..+..|+|+|.+++|||||+|+|+.... ....+. .. ....+|+-+ ....+ .+..+.++||||
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~-~f~~~~---------~~-~~~T~gi~~----~~~~~~~~~~~~v~~lDteG 69 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLS-GFDVMD---------TS-QQTTKGIWM----WSVPFKLGKEHAVLLLDTEG 69 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCC-CeEecC---------CC-CCCccceEE----EeccccCCCcceEEEEecCC
Confidence 4567999999999999999999973210 111110 00 111233322 22222 357899999999
Q ss_pred CCCc------hHHHHHHHHh--cCeEEEEEcCCC
Q 007325 165 HVDF------TLEVERALRV--LDGAICLFDSVA 190 (608)
Q Consensus 165 ~~df------~~~~~~~l~~--~D~~i~VvDa~~ 190 (608)
..+. ......++.. +|.+|+.++...
T Consensus 70 ~~~~~~~~~~~~~~~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 70 TDGRERGEFEDDARLFALATLLSSVLIYNSWETI 103 (224)
T ss_pred cCccccCchhhhhHHHHHHHHHhCEEEEeccCcc
Confidence 8653 2223444444 899999888763
No 387
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.91 E-value=9.7e-06 Score=82.20 Aligned_cols=65 Identities=26% Similarity=0.263 Sum_probs=43.0
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCc
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 168 (608)
+..+++|++|+|||||+|+|+- ....+.+.+.. ...+-+.+|.......+..++ .||||||+..|
T Consensus 165 ~~svl~GqSGVGKSSLiN~L~p--~~~~~t~eIS~--------~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~ 229 (301)
T COG1162 165 KITVLLGQSGVGKSTLINALLP--ELNQKTGEISE--------KLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSL 229 (301)
T ss_pred CeEEEECCCCCcHHHHHHhhCc--hhhhhhhhhcc--------cCCCCCCccceEEEEEcCCCC---EEEeCCCCCcc
Confidence 5889999999999999999962 22222232211 112334567777766665444 59999998775
No 388
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.89 E-value=1.9e-05 Score=73.59 Aligned_cols=57 Identities=19% Similarity=0.335 Sum_probs=39.1
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCC
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 165 (608)
...+++++|.+|+|||||+|+|+...... ....+|+|.......+ +..++++||||.
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~-----------------~~~~~~~t~~~~~~~~---~~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLK-----------------VGNVPGTTTSQQEVKL---DNKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHcccccc-----------------ccCCCCcccceEEEEe---cCCEEEEECCCC
Confidence 45789999999999999999997322111 1112455666554443 256999999994
No 389
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=0.00011 Score=80.83 Aligned_cols=143 Identities=17% Similarity=0.226 Sum_probs=82.0
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccce-------ee--ccCC-c--cccch---hhhhhcc---e-------eE
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIG-------EV--HEGT-A--TMDWM---EQEQERG---I-------TI 143 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g-------~~--~~g~-~--~~d~~---~~e~~~g---i-------Ti 143 (608)
..-.|+|.|.+++||||++|+++...-....+| .+ .+|. . .+|-. ......+ . +-
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~ 187 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLG 187 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccC
Confidence 345899999999999999999985532221111 01 0111 0 01110 0000000 0 11
Q ss_pred eecEEEEeecC-------eeEEEEeCCCCC---CchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEE-
Q 007325 144 TSAATTTYWNK-------HRINIIDTPGHV---DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRIC- 212 (608)
Q Consensus 144 ~~~~~~~~~~~-------~~i~liDTPG~~---df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~iv- 212 (608)
..+...+.|+. ..+.++|.||.. .+...+......+|+.|+|+.|...........+..+.+. +|.|+
T Consensus 188 ~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~-KpniFI 266 (749)
T KOG0448|consen 188 AGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSEE-KPNIFI 266 (749)
T ss_pred cceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhcc-CCcEEE
Confidence 22333444432 268999999964 3566777778889999999999875555555555555544 66655
Q ss_pred EEeCCCcCCCcHHHHHHHHHH
Q 007325 213 FVNKMDRLGANFFRTRDMIVT 233 (608)
Q Consensus 213 viNK~D~~~~~~~~~~~~i~~ 233 (608)
+.||.|.... ..+..+.+++
T Consensus 267 lnnkwDasas-e~ec~e~V~~ 286 (749)
T KOG0448|consen 267 LNNKWDASAS-EPECKEDVLK 286 (749)
T ss_pred Eechhhhhcc-cHHHHHHHHH
Confidence 4688897544 3334444433
No 390
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.87 E-value=0.00012 Score=80.11 Aligned_cols=141 Identities=19% Similarity=0.186 Sum_probs=70.0
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCc---ccceeeccCCccccchhhh----hhcceeEeecEEE------E-eec
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRN---YKIGEVHEGTATMDWMEQE----QERGITITSAATT------T-YWN 153 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~---~~~g~~~~g~~~~d~~~~e----~~~giTi~~~~~~------~-~~~ 153 (608)
+...+|+|+|.+|+||||++..|....-.. .+..-+...+...-....- ...|+.+...... + ...
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~ 427 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR 427 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc
Confidence 345799999999999999999996431110 1111111000000000000 1112211111000 0 124
Q ss_pred CeeEEEEeCCCCCCchHHHHH---HHH--hcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCCcHHHHH
Q 007325 154 KHRINIIDTPGHVDFTLEVER---ALR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTR 228 (608)
Q Consensus 154 ~~~i~liDTPG~~df~~~~~~---~l~--~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~ 228 (608)
++.+.||||||.......... .+. .....++|+++..+..... ++++..... .+.-+|+||+|.. ..+..++
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~-eii~~f~~~-~~~gvILTKlDEt-~~lG~aL 504 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDLD-EVVRRFAHA-KPQGVVLTKLDET-GRFGSAL 504 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCChhHHH-HHHHHHHhh-CCeEEEEecCcCc-cchhHHH
Confidence 688999999997543322211 111 1245678888876433322 333433332 4677999999974 3444444
Q ss_pred HHH
Q 007325 229 DMI 231 (608)
Q Consensus 229 ~~i 231 (608)
+-+
T Consensus 505 sv~ 507 (559)
T PRK12727 505 SVV 507 (559)
T ss_pred HHH
Confidence 443
No 391
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.86 E-value=1.8e-05 Score=79.55 Aligned_cols=64 Identities=16% Similarity=0.142 Sum_probs=40.6
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCc
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 168 (608)
+.++++|++|+|||||+|+|+... ..+.+.+.. ...+-+++|.......+ .+ -.|+||||...|
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~--~~~t~~i~~--------~~~~G~hTT~~~~l~~l--~~--~~liDtPG~~~~ 184 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSV--KQQVNDISS--------KLGLGKHTTTHVELFHF--HG--GLIADTPGFNEF 184 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhh--hccccceec--------cCCCCCCcCCceEEEEc--CC--cEEEeCCCcccc
Confidence 478999999999999999997321 112222211 01122345666666555 22 379999998764
No 392
>PRK14974 cell division protein FtsY; Provisional
Probab=97.85 E-value=9.9e-05 Score=77.28 Aligned_cols=130 Identities=19% Similarity=0.191 Sum_probs=65.3
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCcc----ccchh-hhhhcceeEeecEE-----E--------E
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTAT----MDWME-QEQERGITITSAAT-----T--------T 150 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~----~d~~~-~e~~~giTi~~~~~-----~--------~ 150 (608)
+.+.|+++|.+|+||||++..|............+-.+.++ .+... .-..-|+.+..... . .
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 35789999999999999888886332111000001111000 00000 01112222111000 0 0
Q ss_pred eecCeeEEEEeCCCCCCc----hHHHHHHHH--hcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcC
Q 007325 151 YWNKHRINIIDTPGHVDF----TLEVERALR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (608)
Q Consensus 151 ~~~~~~i~liDTPG~~df----~~~~~~~l~--~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~ 220 (608)
...++.+.||||+|.... ..++....+ ..|..++|+|+..|.. ..+..+.....--.--+++||+|..
T Consensus 219 ~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d--~~~~a~~f~~~~~~~giIlTKlD~~ 292 (336)
T PRK14974 219 KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGND--AVEQAREFNEAVGIDGVILTKVDAD 292 (336)
T ss_pred HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchh--HHHHHHHHHhcCCCCEEEEeeecCC
Confidence 114577999999997643 333333322 3488999999987532 1122222222112347889999974
No 393
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=97.85 E-value=9.4e-05 Score=73.88 Aligned_cols=152 Identities=17% Similarity=0.131 Sum_probs=81.8
Q ss_pred ccCCCCCceeEEEEcCCCCchHHHHHHHHHhhCCccccee-eccCC-cccc-chhhhhhcc------eeEeecEEEEee-
Q 007325 83 RVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGE-VHEGT-ATMD-WMEQEQERG------ITITSAATTTYW- 152 (608)
Q Consensus 83 ~~~~~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~-~~~g~-~~~d-~~~~e~~~g------iTi~~~~~~~~~- 152 (608)
+..+..++|.-.|.|..|+|||||+|.++...+..+-..- .+.|. .-.+ .+-.+++-| +.....+.+++.
T Consensus 50 ~~~~~~rIPvtIITGyLGaGKtTLLn~Il~~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCCtVk 129 (391)
T KOG2743|consen 50 KSSLGARIPVTIITGYLGAGKTTLLNYILTGQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCCTVK 129 (391)
T ss_pred ccCCCCccceEEEEecccCChHHHHHHHHccCCCceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeEEEEec
Confidence 5567788999999999999999999999854443221110 01111 0000 000111111 123444555554
Q ss_pred --------------cCeeEEEEeCCCCCCchHHHH-----HHH---HhcCeEEEEEcCCCCCchhHH----HHHHHH-Hh
Q 007325 153 --------------NKHRINIIDTPGHVDFTLEVE-----RAL---RVLDGAICLFDSVAGVEPQSE----TVWRQA-DK 205 (608)
Q Consensus 153 --------------~~~~i~liDTPG~~df~~~~~-----~~l---~~~D~~i~VvDa~~g~~~~t~----~~~~~~-~~ 205 (608)
+.....++.|-|..+-..... ..+ -..|++|-|||+.+....-++ -+|..+ .+
T Consensus 130 ~~gvraie~lvqkkGkfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~Q 209 (391)
T KOG2743|consen 130 DNGVRAIENLVQKKGKFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQ 209 (391)
T ss_pred chHHHHHHHHHhcCCCcceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHH
Confidence 245789999999988322211 111 234999999999854221111 111111 01
Q ss_pred cCCCEEEEEeCCCcCCCc-HHHHHHHHHHh
Q 007325 206 YGVPRICFVNKMDRLGAN-FFRTRDMIVTN 234 (608)
Q Consensus 206 ~~~p~ivviNK~D~~~~~-~~~~~~~i~~~ 234 (608)
...---+++||.|+...+ ...+.+.|+..
T Consensus 210 iA~AD~II~NKtDli~~e~~~~l~q~I~~I 239 (391)
T KOG2743|consen 210 IALADRIIMNKTDLVSEEEVKKLRQRIRSI 239 (391)
T ss_pred HhhhheeeeccccccCHHHHHHHHHHHHHh
Confidence 111125789999998753 44555555543
No 394
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.84 E-value=3.2e-05 Score=79.75 Aligned_cols=59 Identities=22% Similarity=0.217 Sum_probs=39.9
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCC
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 167 (608)
...+++++|.+|+|||||+|+|+.... ...+ ...|+|.......+ +..+.|+||||...
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~--~~~~---------------~~~g~T~~~~~~~~---~~~~~l~DtPGi~~ 178 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKI--AKTG---------------NRPGVTKAQQWIKL---GKGLELLDTPGILW 178 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCc--cccC---------------CCCCeEEEEEEEEe---CCcEEEEECCCcCC
Confidence 346899999999999999999962211 1111 12466766543333 34689999999754
No 395
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.82 E-value=5.9e-05 Score=77.35 Aligned_cols=57 Identities=23% Similarity=0.258 Sum_probs=38.2
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCC
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 165 (608)
...+++++|.+|+|||||+|+|..... ...+ ...|+|.......+ +..+.++||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~--~~~~---------------~~~g~T~~~~~~~~---~~~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKV--AKVG---------------NRPGVTKGQQWIKL---SDGLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCc--cccC---------------CCCCeecceEEEEe---CCCEEEEECCCc
Confidence 346899999999999999999962211 1111 12455665544333 246899999998
No 396
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.81 E-value=8.3e-05 Score=80.51 Aligned_cols=114 Identities=18% Similarity=0.090 Sum_probs=73.1
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchH
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~ 170 (608)
-.|+++|.-|+|||||+-+|+............ .-|++-.. +.-......++||+-..+-..
T Consensus 10 VRIvliGD~G~GKtSLImSL~~eef~~~VP~rl---------------~~i~IPad---vtPe~vpt~ivD~ss~~~~~~ 71 (625)
T KOG1707|consen 10 VRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRL---------------PRILIPAD---VTPENVPTSIVDTSSDSDDRL 71 (625)
T ss_pred eEEEEECCCCccHHHHHHHHHhhhccccccccC---------------CccccCCc---cCcCcCceEEEecccccchhH
Confidence 478999999999999999998543321111110 11233211 111334588999997777666
Q ss_pred HHHHHHHhcCeEEEEEcCCCC-----CchhHHHHHHHHH--hcCCCEEEEEeCCCcCCC
Q 007325 171 EVERALRVLDGAICLFDSVAG-----VEPQSETVWRQAD--KYGVPRICFVNKMDRLGA 222 (608)
Q Consensus 171 ~~~~~l~~~D~~i~VvDa~~g-----~~~~t~~~~~~~~--~~~~p~ivviNK~D~~~~ 222 (608)
.+..-++.+|++++|.+.++. ++.-=..++++.. -.++|+|+|.||+|....
T Consensus 72 ~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~ 130 (625)
T KOG1707|consen 72 CLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDN 130 (625)
T ss_pred HHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccc
Confidence 778889999999999977652 2211112222221 147899999999998653
No 397
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.81 E-value=4.2e-05 Score=78.85 Aligned_cols=57 Identities=23% Similarity=0.378 Sum_probs=44.1
Q ss_pred CCCCCC-chHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcC
Q 007325 162 TPGHVD-FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (608)
Q Consensus 162 TPG~~d-f~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~ 220 (608)
-|||.. -..++...+..+|++|+|+|+..+.......+.+.+. +.|+++|+||+|+.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp~iiVlNK~DL~ 64 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKPRLLILNKSDLA 64 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCCEEEEEEchhcC
Confidence 477753 4567888899999999999999877665554444332 79999999999985
No 398
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.79 E-value=2.9e-05 Score=71.16 Aligned_cols=55 Identities=20% Similarity=0.218 Sum_probs=35.2
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCC
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 166 (608)
.++++|.+|+|||||+|+|+.... .... ...|.|.......+ + ..+.+|||||..
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~---~~~~--------------~~~~~~~~~~~~~~--~-~~~~i~DtpG~~ 139 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKK---VSVS--------------ATPGKTKHFQTIFL--T-PTITLCDCPGLV 139 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc---eeeC--------------CCCCcccceEEEEe--C-CCEEEEECCCcC
Confidence 899999999999999999962211 0111 11233444333333 2 268999999974
No 399
>PRK12289 GTPase RsgA; Reviewed
Probab=97.76 E-value=2.9e-05 Score=81.90 Aligned_cols=65 Identities=17% Similarity=0.133 Sum_probs=39.3
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCch
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~ 169 (608)
.++|+|.+|+|||||+|+|+... ....+.+.. ...+-|.+|.......+.-+ ..|+||||+..+.
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~--~~~t~~vs~--------~~~rGrHTT~~~~l~~l~~g---~~liDTPG~~~~~ 238 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDV--ELRVGKVSG--------KLGRGRHTTRHVELFELPNG---GLLADTPGFNQPD 238 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCcc--ccccccccC--------CCCCCCCcCceeEEEECCCC---cEEEeCCCccccc
Confidence 58999999999999999997221 111222210 01122345665544444222 3799999987643
No 400
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.72 E-value=4.7e-05 Score=79.64 Aligned_cols=57 Identities=25% Similarity=0.296 Sum_probs=41.0
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCC
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 167 (608)
..+++||.+|+|||||+|+|+..... . ....+|+|.....+.+. ..+.|+||||..-
T Consensus 133 ~~v~vvG~PNVGKSslIN~L~~k~~~--~---------------~s~~PG~Tk~~q~i~~~---~~i~LlDtPGii~ 189 (322)
T COG1161 133 IRVGVVGYPNVGKSTLINRLLGKKVA--K---------------TSNRPGTTKGIQWIKLD---DGIYLLDTPGIIP 189 (322)
T ss_pred eEEEEEcCCCCcHHHHHHHHhcccce--e---------------eCCCCceecceEEEEcC---CCeEEecCCCcCC
Confidence 56999999999999999999733221 1 11234777777666663 4599999999653
No 401
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.70 E-value=0.00034 Score=73.85 Aligned_cols=129 Identities=13% Similarity=0.096 Sum_probs=65.7
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCC-cccceeeccCCccccchhhhh------hcceeEeecEE--E-------Ee-
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGR-NYKIGEVHEGTATMDWMEQEQ------ERGITITSAAT--T-------TY- 151 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~-~~~~g~~~~g~~~~d~~~~e~------~~giTi~~~~~--~-------~~- 151 (608)
+.+.|+++|++|+||||++..|...... -.+.+-+...+.- ....++ .-|+.+..... . +.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R--iaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR--IGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc--hHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 3478999999999999999999633211 1111111110000 000111 11222111000 0 00
Q ss_pred ecCeeEEEEeCCCCCCc----hHHHHHHHHh--cCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCC
Q 007325 152 WNKHRINIIDTPGHVDF----TLEVERALRV--LDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (608)
Q Consensus 152 ~~~~~i~liDTPG~~df----~~~~~~~l~~--~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~ 221 (608)
..++.+.||||||.... ..++...+.. .|.+++|+|++.+.. ....+++.....+ .-=++++|+|-..
T Consensus 318 ~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~-d~~~i~~~F~~~~-idglI~TKLDET~ 391 (436)
T PRK11889 318 EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK-DMIEIITNFKDIH-IDGIVFTKFDETA 391 (436)
T ss_pred ccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChH-HHHHHHHHhcCCC-CCEEEEEcccCCC
Confidence 01468999999997553 3334343332 367889999875322 2233444333322 2357889999653
No 402
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.70 E-value=6.8e-05 Score=71.08 Aligned_cols=57 Identities=21% Similarity=0.179 Sum_probs=38.2
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCC
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 165 (608)
...+++++|.+|+|||||+|+|+..... .. ....|+|.......+. ..+.++||||.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~--~~---------------~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVA--KV---------------GNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCce--ee---------------cCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 4468999999999999999999732110 00 1112446555544442 56899999996
No 403
>PRK13796 GTPase YqeH; Provisional
Probab=97.69 E-value=6e-05 Score=80.31 Aligned_cols=62 Identities=18% Similarity=0.284 Sum_probs=40.4
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCC
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 167 (608)
+++.+||.+|+|||||+|+|+......... ......+|+|.......+. ....++||||...
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~------------~~~s~~pGTT~~~~~~~l~---~~~~l~DTPGi~~ 222 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDV------------ITTSRFPGTTLDKIEIPLD---DGSFLYDTPGIIH 222 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccce------------EEecCCCCccceeEEEEcC---CCcEEEECCCccc
Confidence 589999999999999999998432111000 0112336777776554442 2258999999853
No 404
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.69 E-value=0.00035 Score=68.02 Aligned_cols=64 Identities=22% Similarity=0.270 Sum_probs=46.2
Q ss_pred CeeEEEEeC-CCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcC-CCEEEEEeCCCcC
Q 007325 154 KHRINIIDT-PGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYG-VPRICFVNKMDRL 220 (608)
Q Consensus 154 ~~~i~liDT-PG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~-~p~ivviNK~D~~ 220 (608)
.+.+.++|| +|...|..- ..+.+|.+|+|+|.+..-....+.+-+...+.+ .++.+|+||+|-.
T Consensus 133 ~~e~VivDtEAGiEHfgRg---~~~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 133 RYEVVIVDTEAGIEHFGRG---TIEGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred cCcEEEEecccchhhhccc---cccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch
Confidence 356777777 344444433 245679999999998655556666777778888 7888999999954
No 405
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.69 E-value=0.00053 Score=62.64 Aligned_cols=76 Identities=13% Similarity=0.019 Sum_probs=51.7
Q ss_pred eeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhc--CCCEEEEEeCCCcCCCcHHHHHHHHH
Q 007325 155 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY--GVPRICFVNKMDRLGANFFRTRDMIV 232 (608)
Q Consensus 155 ~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~--~~p~ivviNK~D~~~~~~~~~~~~i~ 232 (608)
+.+.++|||+..+ ......+..+|.+++|++....-...+...++.+... ..+..+|+|+++.. .+.++..+.++
T Consensus 45 yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~-~~~~~~~~~~~ 121 (139)
T cd02038 45 YDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESP-KEGKKVFKRLS 121 (139)
T ss_pred CCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCH-HHHHHHHHHHH
Confidence 7899999998654 4556789999999999998754444455555555432 35677999999743 23334444444
Q ss_pred H
Q 007325 233 T 233 (608)
Q Consensus 233 ~ 233 (608)
+
T Consensus 122 ~ 122 (139)
T cd02038 122 N 122 (139)
T ss_pred H
Confidence 3
No 406
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.66 E-value=0.00018 Score=65.88 Aligned_cols=52 Identities=17% Similarity=0.121 Sum_probs=44.6
Q ss_pred HHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhc--CCCEEEEEeCCCcCC
Q 007325 170 LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY--GVPRICFVNKMDRLG 221 (608)
Q Consensus 170 ~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~--~~p~ivviNK~D~~~ 221 (608)
.++.+++..+|++++|+|+.++...+...+.+.+... ++|+++|+||+|+..
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~ 56 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLT 56 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCC
Confidence 5678899999999999999988877777777777665 899999999999864
No 407
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.66 E-value=0.00014 Score=74.09 Aligned_cols=84 Identities=15% Similarity=0.138 Sum_probs=58.5
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEee--------------c-
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW--------------N- 153 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~--------------~- 153 (608)
+...++|||.+|+|||||+|+|... . ...+.. +=.||++....+.. .
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~-~--a~~~Nf---------------PF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~ 80 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKS-K--AGAANF---------------PFCTIDPNEARVEVPDSRFDLLCPIYGPKS 80 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcC-C--CCccCC---------------CcceeccccceeecCchHHHHHHHhcCCcc
Confidence 3468999999999999999999522 1 112211 11255555444432 1
Q ss_pred --CeeEEEEeCCCCCC-------chHHHHHHHHhcCeEEEEEcCCC
Q 007325 154 --KHRINIIDTPGHVD-------FTLEVERALRVLDGAICLFDSVA 190 (608)
Q Consensus 154 --~~~i~liDTPG~~d-------f~~~~~~~l~~~D~~i~VvDa~~ 190 (608)
.-.+++.|+.|... .......-+|.+|+++.||++.+
T Consensus 81 ~vpa~l~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 81 KVPAFLTVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred eeeeeEEEEeecccccCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 23589999999765 45667788999999999999873
No 408
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.65 E-value=6.5e-05 Score=77.44 Aligned_cols=66 Identities=23% Similarity=0.244 Sum_probs=40.7
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCch
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~ 169 (608)
+.++++|++|+|||||+|+|+.... ...|.+.. ...+.+++|.......+... ..++||||..+|.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~--~~~g~v~~--------~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLD--LATGEISE--------KLGRGRHTTTHRELFPLPGG---GLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhh--ccccceec--------cCCCCCcccceEEEEEcCCC---CEEEECCCCCccC
Confidence 5899999999999999999972211 11122110 11122345665554444322 3799999998763
No 409
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.62 E-value=0.00051 Score=72.29 Aligned_cols=152 Identities=20% Similarity=0.197 Sum_probs=88.0
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEe---ec-----EEEEee---cCeeEEE
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITIT---SA-----ATTTYW---NKHRINI 159 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~---~~-----~~~~~~---~~~~i~l 159 (608)
.=|++||++-+||||++.++....-. ..+.......+..|-.|+... |-|+- +. ...+.. -..++-+
T Consensus 18 IYiGVVGPVRTGKSTFIKRFMel~Vl-PnI~d~~~reRa~DELPQS~a-GktImTTEPKFiP~eAv~I~l~~~~~~kVRL 95 (492)
T PF09547_consen 18 IYIGVVGPVRTGKSTFIKRFMELLVL-PNIEDEYERERARDELPQSGA-GKTIMTTEPKFIPNEAVEITLDDGIKVKVRL 95 (492)
T ss_pred eEEEeecCcccCchhHHHHHHHHhcC-CCCCCHHHHHHhhhcCCcCCC-CCceeccCCcccCCcceEEEecCCceEEEEE
Confidence 46999999999999999999743221 111111111111222221111 11111 11 112222 2367889
Q ss_pred EeCCCCCC-------------------------chHHHHHHHHhc------CeEEEEEcCCCC------CchhHHHHHHH
Q 007325 160 IDTPGHVD-------------------------FTLEVERALRVL------DGAICLFDSVAG------VEPQSETVWRQ 202 (608)
Q Consensus 160 iDTPG~~d-------------------------f~~~~~~~l~~~------D~~i~VvDa~~g------~~~~t~~~~~~ 202 (608)
|||.|+.- |....+-+-+.. =|+|+--|++-+ .....+.+.+.
T Consensus 96 iDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~E 175 (492)
T PF09547_consen 96 IDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEE 175 (492)
T ss_pred EeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHH
Confidence 99999521 332222222211 234444566622 23455677889
Q ss_pred HHhcCCCEEEEEeCCCcCCCcHHHHHHHHHHhhCCccEEEec
Q 007325 203 ADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQL 244 (608)
Q Consensus 203 ~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~ 244 (608)
++..++|+++++|-.+--..+-.+..+++.+.++..++|+..
T Consensus 176 Lk~igKPFvillNs~~P~s~et~~L~~eL~ekY~vpVlpvnc 217 (492)
T PF09547_consen 176 LKEIGKPFVILLNSTKPYSEETQELAEELEEKYDVPVLPVNC 217 (492)
T ss_pred HHHhCCCEEEEEeCCCCCCHHHHHHHHHHHHHhCCcEEEeeh
Confidence 999999999999998866666677889999999988877654
No 410
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.60 E-value=0.00041 Score=66.14 Aligned_cols=68 Identities=24% Similarity=0.307 Sum_probs=45.9
Q ss_pred eeEEEEeCCCCCCc------hHHHHHHHHhcC---eEEEEEcCCCCC-----chhHHHHHHHHHhcCCCEEEEEeCCCcC
Q 007325 155 HRINIIDTPGHVDF------TLEVERALRVLD---GAICLFDSVAGV-----EPQSETVWRQADKYGVPRICFVNKMDRL 220 (608)
Q Consensus 155 ~~i~liDTPG~~df------~~~~~~~l~~~D---~~i~VvDa~~g~-----~~~t~~~~~~~~~~~~p~ivviNK~D~~ 220 (608)
-.+.++|+||+++. .....+.+...+ ++++++|+.--+ -......+..+....+|.|=|++|||+.
T Consensus 98 ddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLl 177 (273)
T KOG1534|consen 98 DDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLL 177 (273)
T ss_pred CCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHh
Confidence 46889999998773 445555665543 467777776322 2233344555567889999999999997
Q ss_pred CC
Q 007325 221 GA 222 (608)
Q Consensus 221 ~~ 222 (608)
..
T Consensus 178 k~ 179 (273)
T KOG1534|consen 178 KD 179 (273)
T ss_pred hh
Confidence 54
No 411
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.59 E-value=0.0042 Score=65.87 Aligned_cols=148 Identities=15% Similarity=0.142 Sum_probs=76.5
Q ss_pred cCeeEEEEeCCCCCCc----hHHHHHHH--HhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCE-EEEEeCCCcCCCcHH
Q 007325 153 NKHRINIIDTPGHVDF----TLEVERAL--RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLGANFF 225 (608)
Q Consensus 153 ~~~~i~liDTPG~~df----~~~~~~~l--~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~-ivviNK~D~~~~~~~ 225 (608)
..+.+.|+||.|.... ..|+...- -.-|=+++|+||.-|...... ...-...+++ =++++|+|-..- -
T Consensus 181 ~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~---A~aF~e~l~itGvIlTKlDGdaR--G 255 (451)
T COG0541 181 EGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNT---AKAFNEALGITGVILTKLDGDAR--G 255 (451)
T ss_pred cCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHH---HHHHhhhcCCceEEEEcccCCCc--c
Confidence 4578999999995443 33332222 223889999999977543321 1122234555 478999995321 1
Q ss_pred HHHHHHHHhhCCccEEEeccCCCCCCeeeEEecccceeEEecCcCCCceeeeecC-cHhHHHHHHH--HHHHHHHHHHhh
Q 007325 226 RTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDI-PANLQKMAQE--YRSQMIETIVEL 302 (608)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~--~r~~l~e~~~~~ 302 (608)
-..-+++...|.++.. +|.+++..+ +++| |+.+.++.-- .-..|+|.+.+.
T Consensus 256 GaALS~~~~tg~PIkF----iGtGEki~d----------------------LE~F~P~R~asRILGMGDv~sLvEk~~~~ 309 (451)
T COG0541 256 GAALSARAITGKPIKF----IGTGEKIDD----------------------LEPFHPDRFASRILGMGDVLSLIEKAEEV 309 (451)
T ss_pred hHHHhhHHHHCCCeEE----EecCCCccc----------------------CCCcChHHHHHHhcCcccHHHHHHHHHHh
Confidence 1222344444442210 133332211 1122 2222222111 123455555433
Q ss_pred -----cHHHHHHHhcCCCCCHHHHHHHHHhhcccC
Q 007325 303 -----DDEAMESYLEGNEPDEETIKKLIRKGTIAG 332 (608)
Q Consensus 303 -----dd~l~e~~l~~~~~~~~el~~~l~~~~~~~ 332 (608)
.+++.++...|. ++-+++++.+++.-..|
T Consensus 310 ~d~e~a~~~~~kl~~g~-FtL~Df~~Ql~~m~kmG 343 (451)
T COG0541 310 VDEEEAEKLAEKLKKGK-FTLEDFLEQLEQMKKMG 343 (451)
T ss_pred hhHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHccC
Confidence 235667777766 89999998887665544
No 412
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=97.58 E-value=0.00052 Score=58.14 Aligned_cols=77 Identities=21% Similarity=0.298 Sum_probs=62.3
Q ss_pred EEEEEEeeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCeeecCCEEEEcCCCcc-cccce
Q 007325 391 AGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDT-ITGET 469 (608)
Q Consensus 391 ~~~V~K~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~-~~Gdt 469 (608)
.++|.....|++.|.++.+-|.+|+|++||.+...... -||..|+...| .++++|.||+.|-|.|++++ ..||.
T Consensus 2 ~g~VlE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~~~--gkVr~l~d~~g---~~v~~a~Ps~~V~I~G~~~~P~aGd~ 76 (95)
T cd03702 2 EGVVIESKLDKGRGPVATVLVQNGTLKVGDVLVAGTTY--GKVRAMFDENG---KRVKEAGPSTPVEILGLKGVPQAGDK 76 (95)
T ss_pred eEEEEEEEecCCCCccEEEEEEcCeEeCCCEEEEcccc--cEEEEEECCCC---CCCCEECCCCcEEEcCCCCCCCCCCE
Confidence 46788888899999999999999999999999876432 25666655554 67999999999999999886 67887
Q ss_pred ecc
Q 007325 470 LCD 472 (608)
Q Consensus 470 L~~ 472 (608)
+..
T Consensus 77 ~~~ 79 (95)
T cd03702 77 FLV 79 (95)
T ss_pred EEE
Confidence 653
No 413
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.58 E-value=0.00049 Score=74.00 Aligned_cols=130 Identities=17% Similarity=0.175 Sum_probs=64.8
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhC---CcccceeeccCCccccchhh----hhhcceeEeecEEE-------EeecC
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTG---RNYKIGEVHEGTATMDWMEQ----EQERGITITSAATT-------TYWNK 154 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g---~~~~~g~~~~g~~~~d~~~~----e~~~giTi~~~~~~-------~~~~~ 154 (608)
....|+++|.+|+||||++..|....- .....+-+...+...-..+. -...|+........ ....+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~ 269 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG 269 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence 456899999999999999998864320 01111111111100000000 01112222211111 11256
Q ss_pred eeEEEEeCCCCCCchHHHHHH---HHh---cCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcC
Q 007325 155 HRINIIDTPGHVDFTLEVERA---LRV---LDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (608)
Q Consensus 155 ~~i~liDTPG~~df~~~~~~~---l~~---~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~ 220 (608)
+.+.+|||+|..........- +.. ..-.++|+|++.+... ..++.......+ .-=++++|+|-.
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~-~~~~~~~f~~~~-~~~~I~TKlDEt 339 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDT-LDEVISAYQGHG-IHGCIITKVDEA 339 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHH-HHHHHHHhcCCC-CCEEEEEeeeCC
Confidence 789999999976543333222 222 2346789999853322 122222222222 225788999964
No 414
>PRK12289 GTPase RsgA; Reviewed
Probab=97.57 E-value=0.00034 Score=73.89 Aligned_cols=47 Identities=19% Similarity=0.268 Sum_probs=35.6
Q ss_pred HHHhcCeEEEEEcCCCCC-ch-hHHHHHHHHHhcCCCEEEEEeCCCcCC
Q 007325 175 ALRVLDGAICLFDSVAGV-EP-QSETVWRQADKYGVPRICFVNKMDRLG 221 (608)
Q Consensus 175 ~l~~~D~~i~VvDa~~g~-~~-~t~~~~~~~~~~~~p~ivviNK~D~~~ 221 (608)
++..+|.+++|+|+.+.. .. .....+..+...++|+++|+||+|+..
T Consensus 86 ~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~ 134 (352)
T PRK12289 86 PVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVS 134 (352)
T ss_pred hhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCC
Confidence 478899999999998543 33 234445556678999999999999863
No 415
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.56 E-value=0.00073 Score=71.17 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=22.3
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHh
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFY 113 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~ 113 (608)
...+.++++|+.|+||||++..|...
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~ 229 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQ 229 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34679999999999999999999643
No 416
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.54 E-value=0.00021 Score=71.93 Aligned_cols=50 Identities=16% Similarity=0.151 Sum_probs=36.6
Q ss_pred HHHHHHhcCeEEEEEcCCCCC-chhHH-HHHHHHHhcCCCEEEEEeCCCcCC
Q 007325 172 VERALRVLDGAICLFDSVAGV-EPQSE-TVWRQADKYGVPRICFVNKMDRLG 221 (608)
Q Consensus 172 ~~~~l~~~D~~i~VvDa~~g~-~~~t~-~~~~~~~~~~~p~ivviNK~D~~~ 221 (608)
....++.+|.+++|+|+.+.. ..... ..+..+...++|+++|+||+|+..
T Consensus 30 ~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~ 81 (245)
T TIGR00157 30 TRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLD 81 (245)
T ss_pred ECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCC
Confidence 334688899999999998644 33333 334455668899999999999853
No 417
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=97.50 E-value=0.00048 Score=65.05 Aligned_cols=83 Identities=14% Similarity=0.074 Sum_probs=59.6
Q ss_pred cCeeEEEEeCCCCCCchHHHHHHH--HhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEE-EEEeCCCcCCCc------
Q 007325 153 NKHRINIIDTPGHVDFTLEVERAL--RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGAN------ 223 (608)
Q Consensus 153 ~~~~i~liDTPG~~df~~~~~~~l--~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~i-vviNK~D~~~~~------ 223 (608)
.++.+.++|||+... ......+ ..+|.+|+|+.+...-...+...++.+.+.+.+++ +|+|+.+....+
T Consensus 66 ~~yD~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~~~~~~~~~~~ 143 (169)
T cd02037 66 GELDYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYFVCPHCGKKIY 143 (169)
T ss_pred CCCCEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCcccCCCCCCccc
Confidence 578899999999753 3333343 57899999998887667777888888998899875 678999853111
Q ss_pred --HHHHHHHHHHhhCC
Q 007325 224 --FFRTRDMIVTNLGA 237 (608)
Q Consensus 224 --~~~~~~~i~~~l~~ 237 (608)
....++++.+.++.
T Consensus 144 ~~~~~~~~~~~~~~~~ 159 (169)
T cd02037 144 IFGKGGGEKLAEELGV 159 (169)
T ss_pred ccCCccHHHHHHHcCC
Confidence 12356666666654
No 418
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.49 E-value=0.0003 Score=71.07 Aligned_cols=80 Identities=21% Similarity=0.276 Sum_probs=53.7
Q ss_pred CCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCC
Q 007325 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (608)
Q Consensus 87 ~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 166 (608)
.+...++.++|-||+|||||+|++........+... .-.+.|+|+..+..---.....+.++||||..
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~------------vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil 207 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAAR------------VGAEPGVTRRVSERIRISHRPPVYLIDTPGIL 207 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhcccee------------ccCCCCceeeehhheEeccCCceEEecCCCcC
Confidence 445679999999999999999999644433332222 22357889888875444456679999999953
Q ss_pred C-chHHHHHHHHh
Q 007325 167 D-FTLEVERALRV 178 (608)
Q Consensus 167 d-f~~~~~~~l~~ 178 (608)
- -....+.+++.
T Consensus 208 ~P~I~~~e~~lKL 220 (335)
T KOG2485|consen 208 VPSIVDVEDGLKL 220 (335)
T ss_pred CCCCCCHHHhhhh
Confidence 2 23344445544
No 419
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=97.47 E-value=0.00052 Score=73.86 Aligned_cols=143 Identities=14% Similarity=0.140 Sum_probs=76.8
Q ss_pred CCCceeEEEEcCCCCchHHHHHHHHHhhCCcc-----------cceeeccCCccccchhhhhhcceeEeecEEEEeecCe
Q 007325 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNY-----------KIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKH 155 (608)
Q Consensus 87 ~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~-----------~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~ 155 (608)
...+++|+|+|++++|||||+++|....|... ..+......+..|+.+........+...... ..
T Consensus 216 ~~~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~E~~R~~~~~~~~~~~~~l~~~D~~~ia~~~~~~~~~~~~~----a~ 291 (399)
T PRK08099 216 PFFVRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGREYVFSHLGGDEMALQYSDYDKIALGHAQYIDFAVKY----AN 291 (399)
T ss_pred hCCCcEEEEEcCCCCCHHHHHHHHHHHhCCCeeeeccHHHHHHhhcCCccCCChhhhHHHHhhhHHHHHHHHHh----cC
Confidence 34578999999999999999999986655441 1222222334455544444333333222211 24
Q ss_pred eEEEEeCCCCCC----------chHHHHHHHH--hcCeEEEEEcCCC-----CCch---------hHHHHHHHHHhcCCC
Q 007325 156 RINIIDTPGHVD----------FTLEVERALR--VLDGAICLFDSVA-----GVEP---------QSETVWRQADKYGVP 209 (608)
Q Consensus 156 ~i~liDTPG~~d----------f~~~~~~~l~--~~D~~i~VvDa~~-----g~~~---------~t~~~~~~~~~~~~p 209 (608)
+++|+||--..- -...+....+ ..|.+ +++|... |... ....+.+.+.++++|
T Consensus 292 ~~~f~Dt~~~~t~~y~~~y~g~~~p~l~~~~~~~ryDlv-lll~pd~Pwv~DGlR~~~D~e~R~~f~~~l~~~l~~~g~~ 370 (399)
T PRK08099 292 KVAFIDTDFVTTQAFCKKYEGREHPFVQALIDEYRFDLT-ILLENNTPWVADGLRSLGSSVDRKRFQNLLKEMLKENNIE 370 (399)
T ss_pred CeEEEeCChHHHHHHHHHhCCCCCHHHHHHHHhCCCCEE-EEcCCCCCcccCCcccCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 699999976321 1122333332 24744 4444432 2121 122233455678999
Q ss_pred EEEEEeCCCcCCCcHHHHHHHHHHhhC
Q 007325 210 RICFVNKMDRLGANFFRTRDMIVTNLG 236 (608)
Q Consensus 210 ~ivviNK~D~~~~~~~~~~~~i~~~l~ 236 (608)
.+.+ ++-|. ..++.++++.|.+.++
T Consensus 371 ~v~l-~~g~~-~eR~~~a~~~i~~~l~ 395 (399)
T PRK08099 371 YVHV-ESPDY-DKRYLRCVELVDQMLG 395 (399)
T ss_pred EEEE-CCCCH-HHHHHHHHHHHHHHhh
Confidence 6555 44442 3456666777776654
No 420
>PRK00098 GTPase RsgA; Reviewed
Probab=97.46 E-value=0.00017 Score=74.68 Aligned_cols=65 Identities=22% Similarity=0.207 Sum_probs=37.7
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCc
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 168 (608)
..++++|++|+|||||+|+|+... ....|.+.. ...+.+.+|.......+. ....++||||...|
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~--~~~~g~v~~--------~~~~G~htT~~~~~~~~~---~~~~~~DtpG~~~~ 229 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDL--ELKTGEISE--------ALGRGKHTTTHVELYDLP---GGGLLIDTPGFSSF 229 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCc--CCCCcceec--------cCCCCCcccccEEEEEcC---CCcEEEECCCcCcc
Confidence 579999999999999999997221 112222211 000112234433333332 23489999998753
No 421
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=97.45 E-value=0.0012 Score=64.96 Aligned_cols=86 Identities=14% Similarity=0.039 Sum_probs=52.4
Q ss_pred cCeeEEEEeCCCCCCchHHHHHH--HHhcCeEEEEEcCCCCCchhHHHHHHHHHhc----CCCE-EEEEeCCCcCCCcHH
Q 007325 153 NKHRINIIDTPGHVDFTLEVERA--LRVLDGAICLFDSVAGVEPQSETVWRQADKY----GVPR-ICFVNKMDRLGANFF 225 (608)
Q Consensus 153 ~~~~i~liDTPG~~df~~~~~~~--l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~----~~p~-ivviNK~D~~~~~~~ 225 (608)
+.+.+.||||||........ .. ++.+|.+|+|++...--......+++.+... +.+. .+++||+|.. ...
T Consensus 115 ~~yD~ilID~~g~~~~~~~~-~~l~~~~ad~vliv~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~--~~~ 191 (212)
T cd02117 115 DDLDVVLYDVLGDVVCGGFA-MPIREGKADEIYIVTSGEFMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD--RET 191 (212)
T ss_pred cCCCEEEEecCCCceecccc-cccccccCcEEEEEecccHHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc--cHH
Confidence 46899999999865321111 12 3479999999987642222233344444332 4444 4789999954 234
Q ss_pred HHHHHHHHhhCCccEE
Q 007325 226 RTRDMIVTNLGAKPLV 241 (608)
Q Consensus 226 ~~~~~i~~~l~~~~~~ 241 (608)
+.++++.+.++.....
T Consensus 192 ~~~~~~~~~~~~~vl~ 207 (212)
T cd02117 192 ELIDAFAERLGTQVIH 207 (212)
T ss_pred HHHHHHHHHcCCCEEE
Confidence 5677888887765443
No 422
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.45 E-value=0.00036 Score=71.89 Aligned_cols=47 Identities=15% Similarity=0.206 Sum_probs=35.5
Q ss_pred HHHhcCeEEEEEcCCCCC-chhH-HHHHHHHHhcCCCEEEEEeCCCcCC
Q 007325 175 ALRVLDGAICLFDSVAGV-EPQS-ETVWRQADKYGVPRICFVNKMDRLG 221 (608)
Q Consensus 175 ~l~~~D~~i~VvDa~~g~-~~~t-~~~~~~~~~~~~p~ivviNK~D~~~ 221 (608)
.+..+|.+++|+|+.+.. .... ...+..+...++|+++|+||+|+..
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~ 123 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLD 123 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCCC
Confidence 356789999999998765 3332 3344556678999999999999853
No 423
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=97.44 E-value=0.001 Score=66.34 Aligned_cols=64 Identities=8% Similarity=0.000 Sum_probs=46.3
Q ss_pred cCeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHH------hcCCCEEEEEeCCC
Q 007325 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQAD------KYGVPRICFVNKMD 218 (608)
Q Consensus 153 ~~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~------~~~~p~ivviNK~D 218 (608)
+++.+.||||||+.+ ..+..++..+|.+|+.+.++.-....+...+..+. ..++|..+++|.++
T Consensus 82 ~~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~ 151 (231)
T PRK13849 82 QGFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPTAILRQRVP 151 (231)
T ss_pred CCCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecc
Confidence 468999999999875 56677899999999998776433333333333322 34678889999987
No 424
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.44 E-value=0.00043 Score=73.70 Aligned_cols=54 Identities=19% Similarity=0.024 Sum_probs=40.1
Q ss_pred CCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCC
Q 007325 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (608)
Q Consensus 166 ~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~ 221 (608)
.+|...+....+.+|++++|+|+.+.......++.+.+ .+.|+++|+||+|+..
T Consensus 51 e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~--~~~piilV~NK~DLl~ 104 (360)
T TIGR03597 51 DDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV--GGNPVLLVGNKIDLLP 104 (360)
T ss_pred HHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh--CCCCEEEEEEchhhCC
Confidence 46777677777888999999999876555444444433 2789999999999864
No 425
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.44 E-value=0.00044 Score=67.79 Aligned_cols=85 Identities=16% Similarity=0.275 Sum_probs=64.5
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCc--
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF-- 168 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df-- 168 (608)
-.++++|.+.+|||||+..|. |..+..... -+.|.......+.+++-++.+.|.||.++-
T Consensus 60 a~vg~vgFPSvGksTl~~~l~---g~~s~vasy---------------efttl~~vpG~~~y~gaKiqlldlpgiiegak 121 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLT---GTFSEVAAY---------------EFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAK 121 (358)
T ss_pred eeeeEEecCccchhhhhhhhc---CCCCccccc---------------cceeEEEecceEeccccceeeecCcchhcccc
Confidence 478999999999999999994 433332221 133666666677788999999999998763
Q ss_pred -----hHHHHHHHHhcCeEEEEEcCCCCCc
Q 007325 169 -----TLEVERALRVLDGAICLFDSVAGVE 193 (608)
Q Consensus 169 -----~~~~~~~l~~~D~~i~VvDa~~g~~ 193 (608)
..++....|.|+.+++|.|+...+.
T Consensus 122 dgkgrg~qviavartcnli~~vld~~kp~~ 151 (358)
T KOG1487|consen 122 DGKGRGKQVIAVARTCNLIFIVLDVLKPLS 151 (358)
T ss_pred cCCCCccEEEEEeecccEEEEEeeccCccc
Confidence 3456777888999999999987654
No 426
>PHA02518 ParA-like protein; Provisional
Probab=97.43 E-value=0.0016 Score=63.50 Aligned_cols=138 Identities=14% Similarity=0.190 Sum_probs=71.2
Q ss_pred eEEEEc-CCCCchHHHHHHHHHh---hCCcccceeeccCCccccchhhhhhcc--eeEeecEEEE------eecCeeEEE
Q 007325 92 NIGIMA-HIDAGKTTTTERVLFY---TGRNYKIGEVHEGTATMDWMEQEQERG--ITITSAATTT------YWNKHRINI 159 (608)
Q Consensus 92 ~i~ivG-~~~~GKTTL~~~ll~~---~g~~~~~g~~~~g~~~~d~~~~e~~~g--iTi~~~~~~~------~~~~~~i~l 159 (608)
.|++.+ ..|+||||+.-.|... .|...-.-..+......+|........ +........+ ....+.+.|
T Consensus 2 ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlliD~D~q~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~d~vi 81 (211)
T PHA02518 2 IIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQGSSTDWAEAREEGEPLIPVVRMGKSIRADLPKVASGYDYVV 81 (211)
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCChHHHHHhcccCCCCCchhhccHHHHHHHHHHhccCCEEE
Confidence 456664 4569999999888532 232222222333333333322111110 1000000000 014578999
Q ss_pred EeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHh-----cCCCEE-EEEeCCCcCCCcHHHHHHHH
Q 007325 160 IDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK-----YGVPRI-CFVNKMDRLGANFFRTRDMI 231 (608)
Q Consensus 160 iDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~-----~~~p~i-vviNK~D~~~~~~~~~~~~i 231 (608)
|||||..+ ..+..++..+|.+|++++.+.--......+++.+.. .+.|.+ ++.|+.+.......+..+.+
T Consensus 82 iD~p~~~~--~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~~~~~~~~~~~~l 157 (211)
T PHA02518 82 VDGAPQDS--ELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISRAIKNTQLYREARKAL 157 (211)
T ss_pred EeCCCCcc--HHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCCCCceEEEEEeccCCcchHHHHHHHHH
Confidence 99999744 567789999999999998875333333333333322 245554 56677664333223344444
No 427
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.43 E-value=0.0003 Score=65.41 Aligned_cols=23 Identities=13% Similarity=0.315 Sum_probs=20.7
Q ss_pred CceeEEEEcCCCCchHHHHHHHH
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll 111 (608)
...+++++|.+|+|||||+|+|.
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~ 122 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALK 122 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 34678999999999999999996
No 428
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.41 E-value=0.00012 Score=70.71 Aligned_cols=129 Identities=19% Similarity=0.244 Sum_probs=72.9
Q ss_pred EEEEcCCCCchHHHHHHHH---HhhCCcccceeeccCCccccchhh------------hhhccee--------EeecEEE
Q 007325 93 IGIMAHIDAGKTTTTERVL---FYTGRNYKIGEVHEGTATMDWMEQ------------EQERGIT--------ITSAATT 149 (608)
Q Consensus 93 i~ivG~~~~GKTTL~~~ll---~~~g~~~~~g~~~~g~~~~d~~~~------------e~~~giT--------i~~~~~~ 149 (608)
.++||+||+||||-.+-+. ...|........++++-.+.|... ..+.|.- +..-...
T Consensus 5 qvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~~Y~~~v~I~elit~edvm~~~~LGPNg~l~yc~E~l~~~ 84 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNLPYECAVDIRELITVEDVMEELGLGPNGALKYCMEYLEAN 84 (290)
T ss_pred eEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCcccCCCCCCcccHHHHccHHHHHHHhCCCCchhHHHHHHHHHhh
Confidence 4699999999999988664 334443344555666544433211 0111100 0000111
Q ss_pred Eee-------cCeeEEEEeCCCCCCc------hHHHHHHHHhcCe---EEEEEcCCCCCc-----hhHHHHHHHHHhcCC
Q 007325 150 TYW-------NKHRINIIDTPGHVDF------TLEVERALRVLDG---AICLFDSVAGVE-----PQSETVWRQADKYGV 208 (608)
Q Consensus 150 ~~~-------~~~~i~liDTPG~~df------~~~~~~~l~~~D~---~i~VvDa~~g~~-----~~t~~~~~~~~~~~~ 208 (608)
++| ....+.++|+||+.++ ...+.+.++..|. +|.++|+.---. ......+.-+.....
T Consensus 85 idwl~~~l~~~~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~mel 164 (290)
T KOG1533|consen 85 IDWLLEKLKPLTDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHMEL 164 (290)
T ss_pred hHHHHHHhhhccCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhcc
Confidence 223 2456899999998874 3445666666665 455666652111 111222344456789
Q ss_pred CEEEEEeCCCcCC
Q 007325 209 PRICFVNKMDRLG 221 (608)
Q Consensus 209 p~ivviNK~D~~~ 221 (608)
|++=|+.|+|+..
T Consensus 165 phVNvlSK~Dl~~ 177 (290)
T KOG1533|consen 165 PHVNVLSKADLLK 177 (290)
T ss_pred cchhhhhHhHHHH
Confidence 9999999999864
No 429
>PRK00098 GTPase RsgA; Reviewed
Probab=97.40 E-value=0.00047 Score=71.48 Aligned_cols=46 Identities=22% Similarity=0.222 Sum_probs=34.2
Q ss_pred HHHhcCeEEEEEcCCCCCc--hhHHHHHHHHHhcCCCEEEEEeCCCcC
Q 007325 175 ALRVLDGAICLFDSVAGVE--PQSETVWRQADKYGVPRICFVNKMDRL 220 (608)
Q Consensus 175 ~l~~~D~~i~VvDa~~g~~--~~t~~~~~~~~~~~~p~ivviNK~D~~ 220 (608)
.+..+|.+++|+|+.+... ......+..+...++|+++|+||+|+.
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~ 124 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLL 124 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcC
Confidence 4678899999999975432 222344455667899999999999985
No 430
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.39 E-value=0.00099 Score=71.22 Aligned_cols=128 Identities=13% Similarity=0.172 Sum_probs=63.5
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhh----CCcccceeeccCCc-cccchhhh-hhcceeEeec------EEEEeecCeeEE
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYT----GRNYKIGEVHEGTA-TMDWMEQE-QERGITITSA------ATTTYWNKHRIN 158 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~----g~~~~~g~~~~g~~-~~d~~~~e-~~~giTi~~~------~~~~~~~~~~i~ 158 (608)
..++++|.+|+||||++..|.... |........+.... ..+..... ...|+..... ...+.-.++.+.
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V 303 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI 303 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence 568999999999999999997432 11111111111000 00000000 1112211100 000011467899
Q ss_pred EEeCCCCCCc----hHHHHHHHHhc-----CeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcC
Q 007325 159 IIDTPGHVDF----TLEVERALRVL-----DGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (608)
Q Consensus 159 liDTPG~~df----~~~~~~~l~~~-----D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~ 220 (608)
||||||+... ..++...++.. .-.++|+|++.+.... ....+.....+ +-=++++|+|-.
T Consensus 304 LIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~-~~~~~~f~~~~-~~glIlTKLDEt 372 (432)
T PRK12724 304 LIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHT-LTVLKAYESLN-YRRILLTKLDEA 372 (432)
T ss_pred EEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHH-HHHHHHhcCCC-CCEEEEEcccCC
Confidence 9999998643 22333333322 2478899998764322 23333332222 235788999964
No 431
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=97.35 E-value=0.0018 Score=55.71 Aligned_cols=84 Identities=15% Similarity=0.235 Sum_probs=56.9
Q ss_pred CCCCeEEEEEEeeecC--------CCceEEEEEEecceeCCCCEEEeCCC-------Cce-e-ecceEEEeecCceeecC
Q 007325 386 DDEPFAGLAFKIMSDP--------FVGSLTFVRVYAGTLSAGSYVLNANK-------GKK-E-RIGRLLEMHANSREDVK 448 (608)
Q Consensus 386 ~~~p~~~~V~K~~~d~--------~~G~la~~RV~sG~l~~g~~v~~~~~-------~~~-~-ki~~i~~~~g~~~~~v~ 448 (608)
.+.|+.++|.+++... ..|-++-++|.+|.|+.||.|-..+- +.. + ....|..+.. ....++
T Consensus 2 ~~~pp~M~V~RsFdinkPG~~~~~l~GgVigGsi~~G~lkvgdeIEIrpg~~~~~~~~~~~~pi~T~I~sl~~-~~~~l~ 80 (113)
T cd03688 2 FTSPPRMIVIRSFDVNKPGTEVDDLKGGVAGGSLLQGVLKVGDEIEIRPGIVVKDEGKIKCRPIFTKIVSLKA-ENNDLQ 80 (113)
T ss_pred CCCCceEEEEEEEecCCCCCccccceeeEEEEEEEEEEEeCCCEEEEeeceeeecCCCeeEEEEEEEEEEEEe-cCcccc
Confidence 3678888888887644 67899999999999999999965421 111 1 1233333332 246799
Q ss_pred eeecCCEEEE-cCCCc-cccccee
Q 007325 449 VALAGDIIAL-AGLKD-TITGETL 470 (608)
Q Consensus 449 ~a~aGdIv~i-~gl~~-~~~GdtL 470 (608)
+|.||+.++| ++|+- +..+|.|
T Consensus 81 ~a~pGgliGvgT~Ldpsltk~D~l 104 (113)
T cd03688 81 EAVPGGLIGVGTKLDPTLTKADRL 104 (113)
T ss_pred EEeCCCeEEEccccCcccccccee
Confidence 9999999999 55553 2334444
No 432
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.30 E-value=0.0019 Score=70.18 Aligned_cols=139 Identities=12% Similarity=0.158 Sum_probs=69.2
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhC---CcccceeeccCCc---cccchhh-hhhcceeEeecEEEE-------eecCe
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTG---RNYKIGEVHEGTA---TMDWMEQ-EQERGITITSAATTT-------YWNKH 155 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g---~~~~~g~~~~g~~---~~d~~~~-e~~~giTi~~~~~~~-------~~~~~ 155 (608)
.++++++|++|+||||++..|..... .-.+.+-++..+. ..+.... -...++.+......- ...++
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~ 300 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDC 300 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCC
Confidence 46899999999999999998863321 1111211111000 0000000 001111111100000 11467
Q ss_pred eEEEEeCCCCCCch----HHHHHHHHhc---CeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCCcHHHHH
Q 007325 156 RINIIDTPGHVDFT----LEVERALRVL---DGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTR 228 (608)
Q Consensus 156 ~i~liDTPG~~df~----~~~~~~l~~~---D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~ 228 (608)
.+.||||||+..+. .++...+..+ +-+.+|++++.+. .....+++.....++ --++++|+|-. ..+..++
T Consensus 301 DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~-~~l~~~~~~f~~~~~-~~vI~TKlDet-~~~G~i~ 377 (424)
T PRK05703 301 DVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY-EDLKDIYKHFSRLPL-DGLIFTKLDET-SSLGSIL 377 (424)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH-HHHHHHHHHhCCCCC-CEEEEeccccc-ccccHHH
Confidence 89999999986543 2333333422 3567888887532 233344444443332 35889999974 3344444
Q ss_pred HHH
Q 007325 229 DMI 231 (608)
Q Consensus 229 ~~i 231 (608)
+-+
T Consensus 378 ~~~ 380 (424)
T PRK05703 378 SLL 380 (424)
T ss_pred HHH
Confidence 433
No 433
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=97.28 E-value=0.0053 Score=61.58 Aligned_cols=82 Identities=18% Similarity=0.193 Sum_probs=55.8
Q ss_pred cCeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCE-EEEEeCCCcCCCcHHHHHHHH
Q 007325 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLGANFFRTRDMI 231 (608)
Q Consensus 153 ~~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~-ivviNK~D~~~~~~~~~~~~i 231 (608)
.++.+.|||||+..+ .....++..+|.+|+|+++...-...+....+.+...+.+. .+++|+.|..... ...+.+
T Consensus 107 ~~yD~VIiD~p~~~~--~~~~~~l~~ad~vliv~~~~~~s~~~~~~~~~~~~~~~~~~~~vv~N~~~~~~~~--~~~~~l 182 (251)
T TIGR01969 107 DDTDFLLIDAPAGLE--RDAVTALAAADELLLVVNPEISSITDALKTKIVAEKLGTAILGVVLNRVTRDKTE--LGREEI 182 (251)
T ss_pred hhCCEEEEeCCCccC--HHHHHHHHhCCeEEEEECCCCchHHHHHHHHHHHHhcCCceEEEEEECCCchhhh--hHHHHH
Confidence 358899999999765 45667788999999999987544444445555566667775 4889999864222 123455
Q ss_pred HHhhCCc
Q 007325 232 VTNLGAK 238 (608)
Q Consensus 232 ~~~l~~~ 238 (608)
.+.++..
T Consensus 183 ~~~~~~~ 189 (251)
T TIGR01969 183 ETILEVP 189 (251)
T ss_pred HHhhCCc
Confidence 5556553
No 434
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.28 E-value=0.0025 Score=68.11 Aligned_cols=129 Identities=17% Similarity=0.199 Sum_probs=66.1
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCc-----ccce--eeccCC-ccccchhh-hhhcceeEeecEEE-------Eeec
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRN-----YKIG--EVHEGT-ATMDWMEQ-EQERGITITSAATT-------TYWN 153 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~-----~~~g--~~~~g~-~~~d~~~~-e~~~giTi~~~~~~-------~~~~ 153 (608)
.++|+++|.+|+||||.+..|....... .+.+ ..+... ...+.... -..-|+.+...... -...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 4689999999999999999986432110 1111 111100 00000000 00012211111000 0115
Q ss_pred CeeEEEEeCCCCCCc----hHHHHHHHHhc--C-eEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcC
Q 007325 154 KHRINIIDTPGHVDF----TLEVERALRVL--D-GAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (608)
Q Consensus 154 ~~~i~liDTPG~~df----~~~~~~~l~~~--D-~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~ 220 (608)
++.+.||||||.... ..++...+... + -.++|+|++.+..... +++......+ +-=++++|+|-.
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~-~~~~~~~~~~-~~~~I~TKlDet 325 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVK-EIFHQFSPFS-YKTVIFTKLDET 325 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHH-HHHHHhcCCC-CCEEEEEeccCC
Confidence 788999999997542 23444444433 3 5789999998633222 3333332222 346789999964
No 435
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=97.28 E-value=0.0027 Score=68.17 Aligned_cols=138 Identities=17% Similarity=0.232 Sum_probs=87.2
Q ss_pred CCCCceeEEEEcCCCCchHHHHHHHHHhh------CC--ccccee--eccCC----------ccccchh-----------
Q 007325 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYT------GR--NYKIGE--VHEGT----------ATMDWME----------- 134 (608)
Q Consensus 86 ~~~~~~~i~ivG~~~~GKTTL~~~ll~~~------g~--~~~~g~--~~~g~----------~~~d~~~----------- 134 (608)
.....|.|++||...+|||+.++.+.... |. .+.+.. +..|. .-.|-.+
T Consensus 304 t~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~ 383 (980)
T KOG0447|consen 304 TQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEI 383 (980)
T ss_pred ccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHH
Confidence 34578999999999999999999985221 10 011111 11121 1112111
Q ss_pred -----hhhhcceeEeecEEEEeecC---eeEEEEeCCCCCC-------------chHHHHHHHHhcCeEEEEE-cCC-CC
Q 007325 135 -----QEQERGITITSAATTTYWNK---HRINIIDTPGHVD-------------FTLEVERALRVLDGAICLF-DSV-AG 191 (608)
Q Consensus 135 -----~e~~~giTi~~~~~~~~~~~---~~i~liDTPG~~d-------------f~~~~~~~l~~~D~~i~Vv-Da~-~g 191 (608)
.....|.|+...+++++.+| .+..++|.||.+. .......++..-+++|++| |++ +.
T Consensus 384 E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDA 463 (980)
T KOG0447|consen 384 ELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDA 463 (980)
T ss_pred HHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcch
Confidence 12345789999999998865 4789999999754 2344555677778888765 333 11
Q ss_pred CchhHHHHHHHHHhcCCCEEEEEeCCCcCCCc
Q 007325 192 VEPQSETVWRQADKYGVPRICFVNKMDRLGAN 223 (608)
Q Consensus 192 ~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~ 223 (608)
-......+..++.-.+...|+|++|+|+...+
T Consensus 464 ERSnVTDLVsq~DP~GrRTIfVLTKVDlAEkn 495 (980)
T KOG0447|consen 464 ERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKN 495 (980)
T ss_pred hhhhHHHHHHhcCCCCCeeEEEEeecchhhhc
Confidence 12223344556666788899999999997643
No 436
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=97.27 E-value=3e-05 Score=72.06 Aligned_cols=115 Identities=20% Similarity=0.311 Sum_probs=76.8
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC---eeEEEEeCCCC
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK---HRINIIDTPGH 165 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~---~~i~liDTPG~ 165 (608)
..-.+.++|.-++|||+++.+.+.+......... |-++....-+.|++ .++.|||..|+
T Consensus 24 hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAt------------------IgvdfalkVl~wdd~t~vRlqLwdIagQ 85 (229)
T KOG4423|consen 24 HLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRAT------------------IGVDFALKVLQWDDKTIVRLQLWDIAGQ 85 (229)
T ss_pred hhhhhheeeeccccchhHHHHHHHHHHHHHHHHH------------------HhHHHHHHHhccChHHHHHHHHhcchhh
Confidence 4557889999999999999999754332110000 01111122234444 35789999999
Q ss_pred CCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHh------cC--CCEEEEEeCCCcCC
Q 007325 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK------YG--VPRICFVNKMDRLG 221 (608)
Q Consensus 166 ~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~------~~--~p~ivviNK~D~~~ 221 (608)
..|....--+++.+.++.+|+|.+..........|.+-.. .+ +|+++..||+|...
T Consensus 86 erfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~ 149 (229)
T KOG4423|consen 86 ERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEK 149 (229)
T ss_pred hhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccCh
Confidence 9999888888999999999999997665555555544321 23 34566779999643
No 437
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=97.25 E-value=0.0039 Score=63.62 Aligned_cols=82 Identities=16% Similarity=0.112 Sum_probs=49.6
Q ss_pred cCeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHH----HhcCCCEE-EEEeCCCcCCCcHHHH
Q 007325 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQA----DKYGVPRI-CFVNKMDRLGANFFRT 227 (608)
Q Consensus 153 ~~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~----~~~~~p~i-vviNK~D~~~~~~~~~ 227 (608)
+++.+.||||||..... .+..++..+|.+|+++.+...-......+++.+ ...+++++ +++|+.|. ...
T Consensus 116 ~~yD~viIDt~g~~~~~-~~~~~l~~AD~viip~~~~~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~~-----~~~ 189 (270)
T PRK13185 116 DDYDVILFDVLGDVVCG-GFAAPLQYADYALIVTANDFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSAG-----TDL 189 (270)
T ss_pred ccCCEEEEecCCCcccC-cccchhhhCcEEEEEecCchhhHHHHHHHHHHHHhhhhccCCCceEEEEeccCh-----HHH
Confidence 46889999999865322 244568889999999977532222222333322 23466654 78899773 233
Q ss_pred HHHHHHhhCCccE
Q 007325 228 RDMIVTNLGAKPL 240 (608)
Q Consensus 228 ~~~i~~~l~~~~~ 240 (608)
++++.+.++....
T Consensus 190 ~~~~~~~~g~~vl 202 (270)
T PRK13185 190 IDKFNEAVGLKVL 202 (270)
T ss_pred HHHHHHHcCCCEE
Confidence 4566666665443
No 438
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.24 E-value=0.0023 Score=67.66 Aligned_cols=126 Identities=17% Similarity=0.212 Sum_probs=67.3
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhC---CcccceeeccCCccccchh---hhhhc------ceeEeecEEEE------
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTG---RNYKIGEVHEGTATMDWME---QEQER------GITITSAATTT------ 150 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g---~~~~~g~~~~g~~~~d~~~---~e~~~------giTi~~~~~~~------ 150 (608)
+.++|++||++|+||||.+-.|..... ...+.+- -++|... .|+-+ |+.+......-
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVai-----ITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai 276 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAI-----ITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAI 276 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEE-----EEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHH
Confidence 368999999999999999999863332 1111111 1122211 12111 22221111110
Q ss_pred -eecCeeEEEEeCCCCCCc----hHHHHHHHHhc--CeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCC
Q 007325 151 -YWNKHRINIIDTPGHVDF----TLEVERALRVL--DGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (608)
Q Consensus 151 -~~~~~~i~liDTPG~~df----~~~~~~~l~~~--D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~ 221 (608)
...++++.||||.|..-. ..++...+..+ .-..+|++++.. .....+++.+....++- =++++|+|-..
T Consensus 277 ~~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K-~~dlkei~~~f~~~~i~-~~I~TKlDET~ 352 (407)
T COG1419 277 EALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK-YEDLKEIIKQFSLFPID-GLIFTKLDETT 352 (407)
T ss_pred HHhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc-hHHHHHHHHHhccCCcc-eeEEEcccccC
Confidence 015678999999997543 44444444444 345667777642 22233344444433333 46789999653
No 439
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.24 E-value=0.0031 Score=64.14 Aligned_cols=131 Identities=13% Similarity=0.114 Sum_probs=65.4
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCC-cccceeeccCCc---cccchhh-hhhcceeEeecEE---------EE-eec
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGR-NYKIGEVHEGTA---TMDWMEQ-EQERGITITSAAT---------TT-YWN 153 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~-~~~~g~~~~g~~---~~d~~~~-e~~~giTi~~~~~---------~~-~~~ 153 (608)
+...++++|.+|+||||++..+...... ....+-+..... ..+.... -..-++.+..... .+ ...
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 3469999999999999999988643211 111222211000 0000000 0011222111000 00 013
Q ss_pred CeeEEEEeCCCCCCch----HHHHHHHHh--cCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCC
Q 007325 154 KHRINIIDTPGHVDFT----LEVERALRV--LDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (608)
Q Consensus 154 ~~~i~liDTPG~~df~----~~~~~~l~~--~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~ 221 (608)
++.+.||||||..... .++...+.. .|-.++|+|++.... ....+.+.....+ +-=++++|+|-..
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~-d~~~~~~~f~~~~-~~~~I~TKlDet~ 225 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK-DMIEIITNFKDIH-IDGIVFTKFDETA 225 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHH-HHHHHHHHhCCCC-CCEEEEEeecCCC
Confidence 5789999999986433 333333332 366799999875322 2222333333222 2357889999654
No 440
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=97.23 E-value=0.0026 Score=55.04 Aligned_cols=81 Identities=23% Similarity=0.294 Sum_probs=64.6
Q ss_pred EEEEEEeeecCCCceEEEEEEecceeCCCCEEEeCCCCc--eeecceEEEeecC-------ceeecCeee--cCCEEEEc
Q 007325 391 AGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGK--KERIGRLLEMHAN-------SREDVKVAL--AGDIIALA 459 (608)
Q Consensus 391 ~~~V~K~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~--~~ki~~i~~~~g~-------~~~~v~~a~--aGdIv~i~ 459 (608)
.+.|.....+++.|..+-+-||+|+|+.||.|......- ..||..|+...+. ++.+++++. +|--+.+.
T Consensus 2 ~gtVlEvk~~~G~G~t~dvIl~~GtL~~GD~Iv~g~~~Gpi~tkVRaLl~~~~~~E~r~~~~~~~vk~v~aa~gvkI~~~ 81 (110)
T cd03703 2 QGTVLEVKEEEGLGTTIDVILYDGTLREGDTIVVCGLNGPIVTKVRALLKPQPLKELRVKSRFIHVKEVKAAAGVKILAP 81 (110)
T ss_pred cEEEEEEEEcCCCceEEEEEEECCeEecCCEEEEccCCCCceEEEeEecCCCCchhhccccccceeeEEecCCCcEEEeC
Confidence 356777788999999999999999999999998765432 3478888877773 345778877 78888888
Q ss_pred CCCcccccceec
Q 007325 460 GLKDTITGETLC 471 (608)
Q Consensus 460 gl~~~~~GdtL~ 471 (608)
||+++..|+.|.
T Consensus 82 gL~~v~aG~~~~ 93 (110)
T cd03703 82 DLEKAIAGSPLL 93 (110)
T ss_pred CCccccCCCEEE
Confidence 999998898764
No 441
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=97.23 E-value=0.00068 Score=70.90 Aligned_cols=82 Identities=13% Similarity=0.051 Sum_probs=62.8
Q ss_pred ceeEeecEEEEeecCeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCC-----------chhHHHHHHHHHh---
Q 007325 140 GITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-----------EPQSETVWRQADK--- 205 (608)
Q Consensus 140 giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~-----------~~~t~~~~~~~~~--- 205 (608)
..|.......+.+++..+.+||++|+......+..++..++++|+|||.++-- .......++.+..
T Consensus 146 ~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~ 225 (317)
T cd00066 146 VKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRW 225 (317)
T ss_pred cccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCcc
Confidence 34555666677788999999999999999999999999999999999998631 1223333333332
Q ss_pred -cCCCEEEEEeCCCcCC
Q 007325 206 -YGVPRICFVNKMDRLG 221 (608)
Q Consensus 206 -~~~p~ivviNK~D~~~ 221 (608)
.++|+++++||.|+..
T Consensus 226 ~~~~pill~~NK~D~f~ 242 (317)
T cd00066 226 FANTSIILFLNKKDLFE 242 (317)
T ss_pred ccCCCEEEEccChHHHH
Confidence 4789999999999753
No 442
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=97.20 E-value=0.0044 Score=62.09 Aligned_cols=82 Identities=15% Similarity=0.130 Sum_probs=52.9
Q ss_pred eeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHH-HHHHHHHh--cCCCEEEEEeCCCcCCCcHHHHHHHH
Q 007325 155 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK--YGVPRICFVNKMDRLGANFFRTRDMI 231 (608)
Q Consensus 155 ~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~-~~~~~~~~--~~~p~ivviNK~D~~~~~~~~~~~~i 231 (608)
+.+.+||||+.. ......++..+|.+|+++.....-..... .+.+.... ...+.-+|+|+.|.......+..+.+
T Consensus 115 ~D~viiD~pp~~--~~~~~~~l~~ad~vii~~~~~~~s~~~~~~~~~~l~~~~~~~~~~~iv~n~~~~~~~~~~~~~~~~ 192 (246)
T TIGR03371 115 RDWVLIDVPRGP--SPITRQALAAADLVLVVVNADAACYATLHQQALALFAGSGPRIGPHFLINQFDPARQLSRDVRAVL 192 (246)
T ss_pred CCEEEEECCCCc--hHHHHHHHHhCCeEEEEeCCCHHHHHHHHHHHHHHhhcccccccceEEeeccCcchhhHHHHHHHH
Confidence 479999999954 45677889999999999988632112222 12122221 23456789999996544345566677
Q ss_pred HHhhCCc
Q 007325 232 VTNLGAK 238 (608)
Q Consensus 232 ~~~l~~~ 238 (608)
++.++..
T Consensus 193 ~~~~~~~ 199 (246)
T TIGR03371 193 RQTLGSR 199 (246)
T ss_pred HHHhccc
Confidence 7777654
No 443
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.19 E-value=0.0017 Score=71.10 Aligned_cols=129 Identities=17% Similarity=0.211 Sum_probs=64.2
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhh----CCcccceeeccCCc---cccchhh-hhhcceeEeecEEE-------Eeec
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYT----GRNYKIGEVHEGTA---TMDWMEQ-EQERGITITSAATT-------TYWN 153 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~----g~~~~~g~~~~g~~---~~d~~~~-e~~~giTi~~~~~~-------~~~~ 153 (608)
+...++++|.+|+||||++..|.... |. .+.+-+...+. ..+.... -...|+.+...... ....
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~-~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~ 333 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGA-SKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELR 333 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCC-CeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhcc
Confidence 34689999999999999999997432 11 11221111100 0000000 11222222111110 1124
Q ss_pred CeeEEEEeCCCCCCchHHHHHHHHh-cCe-----EEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcC
Q 007325 154 KHRINIIDTPGHVDFTLEVERALRV-LDG-----AICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (608)
Q Consensus 154 ~~~i~liDTPG~~df~~~~~~~l~~-~D~-----~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~ 220 (608)
++.+.+|||+|.......+...+.. .+. .++|+|++.+... ..++++.....+ ..-+++||+|-.
T Consensus 334 d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~-l~~i~~~f~~~~-~~g~IlTKlDet 404 (484)
T PRK06995 334 NKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDT-LNEVVQAYRGPG-LAGCILTKLDEA 404 (484)
T ss_pred CCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHH-HHHHHHHhccCC-CCEEEEeCCCCc
Confidence 6689999999955433322222221 222 6789999864321 222333333322 335778999954
No 444
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=97.18 E-value=0.007 Score=61.61 Aligned_cols=81 Identities=19% Similarity=0.148 Sum_probs=49.8
Q ss_pred CeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHH----hcCCCEE-EEEeCCCcCCCcHHHHH
Q 007325 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQAD----KYGVPRI-CFVNKMDRLGANFFRTR 228 (608)
Q Consensus 154 ~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~----~~~~p~i-vviNK~D~~~~~~~~~~ 228 (608)
.+.+.||||||.... ..+..++..+|.+|+++.+...-......+++.+. ..+++.+ +|+|++|. ...+
T Consensus 115 ~yD~vIIDt~g~~~~-~~~~~al~~aD~vlip~~p~~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~-----~~~i 188 (267)
T cd02032 115 EYDVILFDVLGDVVC-GGFAAPLNYADYALIVTDNDFDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK-----TDLI 188 (267)
T ss_pred cCCEEEEeCCCCccc-ccchhhhhhcCEEEEEecCCcccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH-----HHHH
Confidence 578999999986542 22445689999999999886432233333333322 3456644 67899984 2234
Q ss_pred HHHHHhhCCccE
Q 007325 229 DMIVTNLGAKPL 240 (608)
Q Consensus 229 ~~i~~~l~~~~~ 240 (608)
+++.+.++....
T Consensus 189 ~~~~~~~~~~vl 200 (267)
T cd02032 189 DKFVEAVGMPVL 200 (267)
T ss_pred HHHHHhCCCCEE
Confidence 555555665443
No 445
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.15 E-value=0.0022 Score=73.53 Aligned_cols=129 Identities=15% Similarity=0.208 Sum_probs=62.3
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhh----CCcccceeeccCC-c--cccchh-hhhhcceeEeecEE--EE-----eecC
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYT----GRNYKIGEVHEGT-A--TMDWME-QEQERGITITSAAT--TT-----YWNK 154 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~----g~~~~~g~~~~g~-~--~~d~~~-~e~~~giTi~~~~~--~~-----~~~~ 154 (608)
...|++||+.|+||||++..|.... |. .++.-+...+ . ..+... --...|+.+..... .+ ...+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~-kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~ 263 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGA-DQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGD 263 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCC-CeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcC
Confidence 4689999999999999999997322 11 1111110000 0 000000 00111221111000 00 1246
Q ss_pred eeEEEEeCCCCCCchHHHHHHHHh------cCeEEEEEcCCCCCchhHHHHHHHHHhc-CC-CEEEEEeCCCcC
Q 007325 155 HRINIIDTPGHVDFTLEVERALRV------LDGAICLFDSVAGVEPQSETVWRQADKY-GV-PRICFVNKMDRL 220 (608)
Q Consensus 155 ~~i~liDTPG~~df~~~~~~~l~~------~D~~i~VvDa~~g~~~~t~~~~~~~~~~-~~-p~ivviNK~D~~ 220 (608)
+.+.||||||.-.........+.. -+-.++|+|++.+.. ...++.+..... .. +-=++++|+|-.
T Consensus 264 ~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~-~l~~i~~~f~~~~~~~i~glIlTKLDEt 336 (767)
T PRK14723 264 KHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGD-TLNEVVHAYRHGAGEDVDGCIITKLDEA 336 (767)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHH-HHHHHHHHHhhcccCCCCEEEEeccCCC
Confidence 789999999954333333333222 245789999985322 112232222221 11 335789999964
No 446
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=97.15 E-value=0.0012 Score=69.67 Aligned_cols=82 Identities=16% Similarity=0.064 Sum_probs=63.5
Q ss_pred cceeEeecEEEEeecCeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCC-----------chhHHHHHHHHHh--
Q 007325 139 RGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-----------EPQSETVWRQADK-- 205 (608)
Q Consensus 139 ~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~-----------~~~t~~~~~~~~~-- 205 (608)
|..|.......+.+++..+.+||..|+..+...+..++..++++|+|||.++-- .......++.+..
T Consensus 168 r~~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~ 247 (342)
T smart00275 168 RVPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSR 247 (342)
T ss_pred eCCccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCc
Confidence 344556666777888999999999999999999999999999999999999631 2233334444432
Q ss_pred --cCCCEEEEEeCCCcC
Q 007325 206 --YGVPRICFVNKMDRL 220 (608)
Q Consensus 206 --~~~p~ivviNK~D~~ 220 (608)
.++|+++++||.|+.
T Consensus 248 ~~~~~piil~~NK~D~~ 264 (342)
T smart00275 248 WFANTSIILFLNKIDLF 264 (342)
T ss_pred cccCCcEEEEEecHHhH
Confidence 468999999999975
No 447
>PRK01889 GTPase RsgA; Reviewed
Probab=97.13 E-value=0.0024 Score=67.87 Aligned_cols=46 Identities=13% Similarity=0.036 Sum_probs=37.6
Q ss_pred HHhcCeEEEEEcCCCCCch-hHHHHHHHHHhcCCCEEEEEeCCCcCC
Q 007325 176 LRVLDGAICLFDSVAGVEP-QSETVWRQADKYGVPRICFVNKMDRLG 221 (608)
Q Consensus 176 l~~~D~~i~VvDa~~g~~~-~t~~~~~~~~~~~~p~ivviNK~D~~~ 221 (608)
...+|.+++|+++...... .....+..+...++|.++|+||+|+..
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~ 156 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLCE 156 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcCC
Confidence 3567999999999866665 555677778889999999999999864
No 448
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.12 E-value=0.0053 Score=53.28 Aligned_cols=59 Identities=10% Similarity=-0.010 Sum_probs=45.0
Q ss_pred eEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCC----CEEEEEeC
Q 007325 156 RINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGV----PRICFVNK 216 (608)
Q Consensus 156 ~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~----p~ivviNK 216 (608)
.+.++|||+..+ ......+..+|.+++|++....-.......++.+.+.+. .+.+|+|+
T Consensus 44 D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLD--EVSLAALDQADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcC--HHHHHHHHHcCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 789999999765 345678899999999999987666666667776666554 45578885
No 449
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.10 E-value=0.0037 Score=53.75 Aligned_cols=81 Identities=23% Similarity=0.169 Sum_probs=51.1
Q ss_pred EEEEc-CCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchHH
Q 007325 93 IGIMA-HIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (608)
Q Consensus 93 i~ivG-~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (608)
|++.| ..|+||||+.-.|...... .+. ..-..|.++ .+.+.++|||+..+ ..
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~---~~~---~vl~~d~d~-------------------~~d~viiD~p~~~~--~~ 54 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR---RGK---RVLLIDLDP-------------------QYDYIIIDTPPSLG--LL 54 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh---CCC---cEEEEeCCC-------------------CCCEEEEeCcCCCC--HH
Confidence 56666 6799999999988633221 110 001111111 16799999999765 34
Q ss_pred HHHHHHhcCeEEEEEcCCCCCchhHHHHH
Q 007325 172 VERALRVLDGAICLFDSVAGVEPQSETVW 200 (608)
Q Consensus 172 ~~~~l~~~D~~i~VvDa~~g~~~~t~~~~ 200 (608)
...++..+|.+++++++...-.......+
T Consensus 55 ~~~~l~~ad~viv~~~~~~~s~~~~~~~~ 83 (104)
T cd02042 55 TRNALAAADLVLIPVQPSPLDLDGLEKLL 83 (104)
T ss_pred HHHHHHHCCEEEEeccCCHHHHHHHHHHH
Confidence 55889999999999988754333344443
No 450
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=97.09 E-value=0.0033 Score=53.41 Aligned_cols=76 Identities=21% Similarity=0.291 Sum_probs=59.9
Q ss_pred EEEEEEeeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCeeecCCEEEEcCCCc-ccccce
Q 007325 391 AGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKD-TITGET 469 (608)
Q Consensus 391 ~~~V~K~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~-~~~Gdt 469 (608)
.++|.....|++.|.++.+-|.+|+|++||.+..... .-+|..++.- .-..+++|.||+.+.+.|+++ ...||.
T Consensus 2 ~g~ViE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~~--~GkVr~~~d~---~g~~v~~a~Ps~~v~i~g~~~~p~aGd~ 76 (95)
T cd03701 2 EGTVIESKLDKGRGPVATVIVQNGTLKKGDVIVAGGT--YGKIRTMVDE---NGKALLEAGPSTPVEILGLKDVPKAGDG 76 (95)
T ss_pred eEEEEEEEecCCCCeeEEEEEEcCeEecCCEEEECCc--cceEEEEECC---CCCCccccCCCCCEEEeeecCCccCCCE
Confidence 4678888889999999999999999999999987642 2345555444 345799999999999999887 467777
Q ss_pred ec
Q 007325 470 LC 471 (608)
Q Consensus 470 L~ 471 (608)
+.
T Consensus 77 ~~ 78 (95)
T cd03701 77 VL 78 (95)
T ss_pred EE
Confidence 64
No 451
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=97.07 E-value=0.0067 Score=59.10 Aligned_cols=68 Identities=21% Similarity=0.150 Sum_probs=51.7
Q ss_pred cCeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEE-EEEeCCCcCC
Q 007325 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLG 221 (608)
Q Consensus 153 ~~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~i-vviNK~D~~~ 221 (608)
..+.+.|+|||.... ..+.......+|.+|+|+++...-........+.+...+.+++ +|+||.|...
T Consensus 126 ~~yD~ViiD~pp~~~-~~~~~~~~~~~D~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~gvVlN~~~~~~ 194 (204)
T TIGR01007 126 KYFDYIIIDTPPIGT-VTDAAIIARACDASILVTDAGEIKKRDVQKAKEQLEQTGSNFLGVVLNKVDISV 194 (204)
T ss_pred hcCCEEEEeCCCccc-cchHHHHHHhCCeEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEEeCccccc
Confidence 357899999998432 2233345567899999999987777777888888888888865 6889999653
No 452
>PRK13796 GTPase YqeH; Provisional
Probab=97.05 E-value=0.0033 Score=67.03 Aligned_cols=52 Identities=19% Similarity=0.064 Sum_probs=34.9
Q ss_pred CchHHHHHHHHhcC-eEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCC
Q 007325 167 DFTLEVERALRVLD-GAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (608)
Q Consensus 167 df~~~~~~~l~~~D-~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~ 221 (608)
+|.. +...+...| .+++|||+.+........+.+.. .+.|+++|+||+|+..
T Consensus 58 ~~~~-~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~--~~kpviLViNK~DLl~ 110 (365)
T PRK13796 58 DFLK-LLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFV--GNNPVLLVGNKADLLP 110 (365)
T ss_pred HHHH-HHHhhcccCcEEEEEEECccCCCchhHHHHHHh--CCCCEEEEEEchhhCC
Confidence 3444 555666556 88999999885544443333322 3789999999999864
No 453
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=97.03 E-value=0.0051 Score=62.90 Aligned_cols=91 Identities=10% Similarity=-0.016 Sum_probs=52.9
Q ss_pred ecCeeEEEEeCCCCCCch-HHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHH---hcCCCEE-EEEeCCCcCCCcHHH
Q 007325 152 WNKHRINIIDTPGHVDFT-LEVERALRVLDGAICLFDSVAGVEPQSETVWRQAD---KYGVPRI-CFVNKMDRLGANFFR 226 (608)
Q Consensus 152 ~~~~~i~liDTPG~~df~-~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~---~~~~p~i-vviNK~D~~~~~~~~ 226 (608)
++++.+.||||||..... -....++..+|.+|+++.....-......+++.+. ..++++. +++|+.+.. ...+
T Consensus 114 ~~~yD~vlID~~~~~~~~~~~~~~al~aad~vlip~~p~~~sl~~~~~~~k~l~~~~~~~l~~~GiV~n~~~~~--~~~~ 191 (273)
T PRK13232 114 TDDLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASGELMAIYAANNICKGLAKFAKGGARLGGIICNSRNVD--GERE 191 (273)
T ss_pred cccCCEEEEecCCCeeECCEeccccccccceEEEecCchHHHHHHHHHHHHHHHHHhCCCCceeEEEEeCCCCC--ccHH
Confidence 356899999999865211 11112345789999998765322222222333333 3356664 778976532 2256
Q ss_pred HHHHHHHhhCCccEEEecc
Q 007325 227 TRDMIVTNLGAKPLVVQLP 245 (608)
Q Consensus 227 ~~~~i~~~l~~~~~~~~~p 245 (608)
+++++++.++.... -.+|
T Consensus 192 ~~e~l~~~~~~~vl-~~Ip 209 (273)
T PRK13232 192 LLEAFAKKLGSQLI-HFVP 209 (273)
T ss_pred HHHHHHHHhCCCeE-EECC
Confidence 78888888886433 2444
No 454
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=97.03 E-value=0.0088 Score=61.76 Aligned_cols=85 Identities=16% Similarity=0.051 Sum_probs=51.8
Q ss_pred CeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHh----cCCCEE-EEEeCCCcCCCcHHHHH
Q 007325 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK----YGVPRI-CFVNKMDRLGANFFRTR 228 (608)
Q Consensus 154 ~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~----~~~p~i-vviNK~D~~~~~~~~~~ 228 (608)
++.+.||||||.... ..+..++..+|.+|+++++..--......+++.+.. .+++.. +++|+.|. ...+
T Consensus 115 ~yD~IiIDt~~~l~~-~a~~aal~~AD~viIp~~p~~~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~~-----~~~~ 188 (290)
T CHL00072 115 EYDIILFDVLGDVVC-GGFAAPLNYADYCIIITDNGFDALFAANRIAASVREKARTHPLRLAGLVGNRTSK-----RDLI 188 (290)
T ss_pred cCCEEEEecCCccee-chhhhhhhcCCEEEEEecCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCCc-----hhHH
Confidence 578999999986432 223456788999999998864322333333333322 234443 78899873 2345
Q ss_pred HHHHHhhCCccEEEecc
Q 007325 229 DMIVTNLGAKPLVVQLP 245 (608)
Q Consensus 229 ~~i~~~l~~~~~~~~~p 245 (608)
+++.+.++...+. .+|
T Consensus 189 ~~~~~~~~~~vl~-~Ip 204 (290)
T CHL00072 189 DKYVEACPMPVLE-VLP 204 (290)
T ss_pred HHHHHHcCCceEE-ECC
Confidence 6666777766544 455
No 455
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.01 E-value=0.00069 Score=72.59 Aligned_cols=74 Identities=24% Similarity=0.324 Sum_probs=44.7
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCch
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~ 169 (608)
..+|++||+||+||||+||+|. |.... +| ...+|-|-....+.+ ...+.|-||||.+==+
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLv---G~KkV--sV------------S~TPGkTKHFQTi~l---s~~v~LCDCPGLVfPS 373 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALV---GRKKV--SV------------SSTPGKTKHFQTIFL---SPSVCLCDCPGLVFPS 373 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHh---cCcee--ee------------ecCCCCcceeEEEEc---CCCceecCCCCccccC
Confidence 6899999999999999999996 32211 11 112344444443333 3568899999965322
Q ss_pred HHHHHHHHhcCeEE
Q 007325 170 LEVERALRVLDGAI 183 (608)
Q Consensus 170 ~~~~~~l~~~D~~i 183 (608)
....++.-.++|++
T Consensus 374 f~~~r~emvl~GiL 387 (562)
T KOG1424|consen 374 FSPTRAEMVLNGIL 387 (562)
T ss_pred CCchHHHHHHhcCc
Confidence 22223444445543
No 456
>CHL00175 minD septum-site determining protein; Validated
Probab=97.00 E-value=0.018 Score=59.15 Aligned_cols=89 Identities=17% Similarity=0.127 Sum_probs=58.8
Q ss_pred CeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCC-CEEEEEeCCCcCCCcHH--HHHHH
Q 007325 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGV-PRICFVNKMDRLGANFF--RTRDM 230 (608)
Q Consensus 154 ~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~-p~ivviNK~D~~~~~~~--~~~~~ 230 (608)
.+.+.|||||+... .....++..+|.+|+|++....-......+++.+...+. ..-+|+|+++....+.. ...++
T Consensus 126 ~yD~VIiDtpp~~~--~~~~~~l~~aD~viiV~~p~~~si~~~~~~~~~l~~~~~~~~~lvvN~~~~~~~~~~~~~~~~~ 203 (281)
T CHL00175 126 GYDYILIDCPAGID--VGFINAIAPAQEAIVVTTPEITAIRDADRVAGLLEANGIYNVKLLVNRVRPDMIQANDMMSVRD 203 (281)
T ss_pred CCCEEEEeCCCCCC--HHHHHHHHhcCeeEEEcCCChHHHHHHHHHHHHHHHcCCCceEEEEeccChhhhhhhccccHHH
Confidence 67899999998754 456677888999999998875444455556666666555 35678899985321111 13566
Q ss_pred HHHhhCCccEEEecc
Q 007325 231 IVTNLGAKPLVVQLP 245 (608)
Q Consensus 231 i~~~l~~~~~~~~~p 245 (608)
+.+.++.... ..+|
T Consensus 204 l~~~~~~~~~-~~Ip 217 (281)
T CHL00175 204 VQEMLGIPLL-GAIP 217 (281)
T ss_pred HHHHhCCCeE-EEcc
Confidence 7777776433 3444
No 457
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=96.95 E-value=0.0089 Score=60.87 Aligned_cols=82 Identities=15% Similarity=0.105 Sum_probs=49.5
Q ss_pred cCeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHH----hcCCCE-EEEEeCCCcCCCcHHHH
Q 007325 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQAD----KYGVPR-ICFVNKMDRLGANFFRT 227 (608)
Q Consensus 153 ~~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~----~~~~p~-ivviNK~D~~~~~~~~~ 227 (608)
+.+.+.||||||..... .+..++..+|.+|+++............+++.+. ..+++. .+|+|++|.. ..
T Consensus 114 ~~yD~ViID~~~~~~~~-~~~~~l~aAD~vlip~~~~~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~~-----~~ 187 (268)
T TIGR01281 114 DDYDVILFDVLGDVVCG-GFATPLQYADYALVVAANDFDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDAT-----DL 187 (268)
T ss_pred ccCCEEEEecCCccccC-ccccchhhcCEEEEEecCchhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCChH-----HH
Confidence 45899999999864311 1224578999999998665322222333333222 245654 4788999853 45
Q ss_pred HHHHHHhhCCccE
Q 007325 228 RDMIVTNLGAKPL 240 (608)
Q Consensus 228 ~~~i~~~l~~~~~ 240 (608)
++++.+.++.+..
T Consensus 188 ~~~~~~~~~~~vl 200 (268)
T TIGR01281 188 IERFNERVGMPVL 200 (268)
T ss_pred HHHHHHHcCCCEE
Confidence 5666666665544
No 458
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=96.94 E-value=0.0082 Score=61.06 Aligned_cols=90 Identities=12% Similarity=-0.001 Sum_probs=49.3
Q ss_pred cCeeEEEEeCCCCCCchHH-HHHHHHhcCeEEEEEcCCCCCchhHHHHHHHH----HhcCCCEEEE-EeCCCcCCCcHHH
Q 007325 153 NKHRINIIDTPGHVDFTLE-VERALRVLDGAICLFDSVAGVEPQSETVWRQA----DKYGVPRICF-VNKMDRLGANFFR 226 (608)
Q Consensus 153 ~~~~i~liDTPG~~df~~~-~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~----~~~~~p~ivv-iNK~D~~~~~~~~ 226 (608)
+++.+.||||||....... ...++..+|.+|+++.+..--......+++.+ ...+.++..| .|+.. .....+
T Consensus 115 ~~yD~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p~~~sl~~~~~l~~~i~~~~~~~~~~l~gVv~n~~~--~~~~~~ 192 (270)
T cd02040 115 DDLDFVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMALYAANNICKGILKYAKSGGVRLGGLICNSRN--TDREDE 192 (270)
T ss_pred cCCCEEEEecccCcccCCcccccccccccEEEEEecCchHHHHHHHHHHHHHHHhCccCCCceEEEEEecCC--ChhHHH
Confidence 3678999999986532111 11233468999999988642222222233222 2235666544 45532 222345
Q ss_pred HHHHHHHhhCCccEEEecc
Q 007325 227 TRDMIVTNLGAKPLVVQLP 245 (608)
Q Consensus 227 ~~~~i~~~l~~~~~~~~~p 245 (608)
.++++++.++.... -.+|
T Consensus 193 ~~~~l~~~~g~~vl-~~Ip 210 (270)
T cd02040 193 LIDAFAKRLGTQMI-HFVP 210 (270)
T ss_pred HHHHHHHHcCCCeE-eecC
Confidence 67788888876433 2344
No 459
>PRK12288 GTPase RsgA; Reviewed
Probab=96.94 E-value=0.0046 Score=65.33 Aligned_cols=46 Identities=13% Similarity=0.183 Sum_probs=33.2
Q ss_pred HHhcCeEEEEEcCCCCCchhHHHH-HHHHHhcCCCEEEEEeCCCcCC
Q 007325 176 LRVLDGAICLFDSVAGVEPQSETV-WRQADKYGVPRICFVNKMDRLG 221 (608)
Q Consensus 176 l~~~D~~i~VvDa~~g~~~~t~~~-~~~~~~~~~p~ivviNK~D~~~ 221 (608)
...+|.+++|.+..........+- +..+...++|.++|+||+|+..
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~ 164 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLIVLNKIDLLD 164 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCC
Confidence 355799999988775555444333 3445667899999999999864
No 460
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.93 E-value=0.0064 Score=50.73 Aligned_cols=77 Identities=19% Similarity=0.127 Sum_probs=50.8
Q ss_pred EEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchHH-
Q 007325 93 IGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE- 171 (608)
Q Consensus 93 i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~- 171 (608)
+++.|..|+||||++..|...... . |..+ ..+ + .+.++|+||..+....
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~---~-------------------g~~v----~~~--~--d~iivD~~~~~~~~~~~ 51 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK---R-------------------GKRV----LLI--D--DYVLIDTPPGLGLLVLL 51 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH---C-------------------CCeE----EEE--C--CEEEEeCCCCccchhhh
Confidence 678899999999999999633211 0 1000 011 1 7899999998764322
Q ss_pred HHHHHHhcCeEEEEEcCCCCCchhHHHH
Q 007325 172 VERALRVLDGAICLFDSVAGVEPQSETV 199 (608)
Q Consensus 172 ~~~~l~~~D~~i~VvDa~~g~~~~t~~~ 199 (608)
....+..+|.++++++............
T Consensus 52 ~~~~~~~~~~vi~v~~~~~~~~~~~~~~ 79 (99)
T cd01983 52 CLLALLAADLVIIVTTPEALAVLGARRL 79 (99)
T ss_pred hhhhhhhCCEEEEecCCchhhHHHHHHH
Confidence 2567778899999998886544444333
No 461
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.87 E-value=0.017 Score=56.32 Aligned_cols=116 Identities=20% Similarity=0.273 Sum_probs=71.7
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCch-
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT- 169 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~- 169 (608)
|.|.++|+--+|||++-....+...-. +..-.|....+|.+....++ ..+.+||-||+.+|.
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPn-------------eTlflESTski~~d~is~sf----inf~v~dfPGQ~~~Fd 90 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPN-------------ETLFLESTSKITRDHISNSF----INFQVWDFPGQMDFFD 90 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCC-------------ceeEeeccCcccHhhhhhhh----cceEEeecCCccccCC
Confidence 569999999999999988774221100 11112222222322211111 357899999999864
Q ss_pred --HHHHHHHHhcCeEEEEEcCCCCCchh-HHHHHHHHHhc----CCCEEEEEeCCCcCCCc
Q 007325 170 --LEVERALRVLDGAICLFDSVAGVEPQ-SETVWRQADKY----GVPRICFVNKMDRLGAN 223 (608)
Q Consensus 170 --~~~~~~l~~~D~~i~VvDa~~g~~~~-t~~~~~~~~~~----~~p~ivviNK~D~~~~~ 223 (608)
-..+...+.+-+.|+|||+.+..+.. +.-+.-..+.+ ++.+=+++-|+|-...+
T Consensus 91 ~s~D~e~iF~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd 151 (347)
T KOG3887|consen 91 PSFDYEMIFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDD 151 (347)
T ss_pred CccCHHHHHhccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchh
Confidence 34566788889999999998654433 33233333333 45566899999977655
No 462
>PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A.
Probab=96.82 E-value=0.01 Score=48.38 Aligned_cols=75 Identities=23% Similarity=0.315 Sum_probs=49.6
Q ss_pred CeEEEEEEeeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCeeecCCEEEE--cCCCcccc
Q 007325 389 PFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLKDTIT 466 (608)
Q Consensus 389 p~~~~V~K~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~~~~~ 466 (608)
|....|.+.+.-...+ +..++|..|+|++|..| +|. +++.+..++-+ .+++++|.+||-|++ .|..++..
T Consensus 4 p~ki~Ilp~~vFr~~~-~IvG~V~~G~ik~G~~l----~G~--~iG~I~sIe~~-~k~v~~A~~G~eVai~Ieg~~~i~e 75 (81)
T PF14578_consen 4 PGKIRILPVCVFRQSD-AIVGEVLEGIIKPGYPL----DGR--KIGRIKSIEDN-GKNVDEAKKGDEVAISIEGPTQIKE 75 (81)
T ss_dssp SEEEEEEEEEEECTCC-EEEEEEEEEEEETT-EE----CSS--CEEEEEEEEET-TEEESEEETT-EEEEEEET--TB-T
T ss_pred ceEEEECCcCEEecCC-eEEEEEeeeEEeCCCcc----CCE--EEEEEEEeEEC-CcCccccCCCCEEEEEEeCCccCCC
Confidence 3344444444444556 66679999999999999 333 48888888754 489999999999998 44445667
Q ss_pred cceec
Q 007325 467 GETLC 471 (608)
Q Consensus 467 GdtL~ 471 (608)
||+|.
T Consensus 76 GDiLy 80 (81)
T PF14578_consen 76 GDILY 80 (81)
T ss_dssp T-EEE
T ss_pred CCEEe
Confidence 88763
No 463
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.81 E-value=0.016 Score=59.40 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=21.5
Q ss_pred CCceeEEEEcCCCCchHHHHHHHH
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll 111 (608)
.+.-+|+++|..|+|||||++.|.
T Consensus 186 tdf~VIgvlG~QgsGKStllslLa 209 (491)
T KOG4181|consen 186 TDFTVIGVLGGQGSGKSTLLSLLA 209 (491)
T ss_pred CCeeEEEeecCCCccHHHHHHHHh
Confidence 456789999999999999999885
No 464
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.81 E-value=0.0057 Score=60.71 Aligned_cols=143 Identities=15% Similarity=0.185 Sum_probs=77.8
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCCCCCC
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVD 167 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~d 167 (608)
.-||..||.+|-|||||++.|....-. ..... . ...++........+...+ .+++++||.|+.|
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~-~~p~~--------H-----~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGD 107 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFE-SEPST--------H-----TLPNVKLQANTYELQESNVRLKLTIVDTVGFGD 107 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccC-CCCCc--------c-----CCCCceeecchhhhhhcCeeEEEEEEeeccccc
Confidence 469999999999999999999622111 10000 0 011122222222222222 4689999999876
Q ss_pred -------------ch-HHHHH----------HHH-----hcCeEEEEEcCC-CCCchhHHHHHHHHHhcCCCEEEEEeCC
Q 007325 168 -------------FT-LEVER----------ALR-----VLDGAICLFDSV-AGVEPQSETVWRQADKYGVPRICFVNKM 217 (608)
Q Consensus 168 -------------f~-~~~~~----------~l~-----~~D~~i~VvDa~-~g~~~~t~~~~~~~~~~~~p~ivviNK~ 217 (608)
|. .+.+. ++. ...++++.|..+ ++....+.-.++.+. .++.+|-++-|.
T Consensus 108 QinK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Ld-skVNIIPvIAKa 186 (406)
T KOG3859|consen 108 QINKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLD-SKVNIIPVIAKA 186 (406)
T ss_pred ccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHh-hhhhhHHHHHHh
Confidence 11 11111 111 125567777665 666666665555554 346677788999
Q ss_pred CcCCCc-HHHHHHHHHHhhCCc-cEEEeccCC
Q 007325 218 DRLGAN-FFRTRDMIVTNLGAK-PLVVQLPVG 247 (608)
Q Consensus 218 D~~~~~-~~~~~~~i~~~l~~~-~~~~~~pi~ 247 (608)
|-...+ +.+....|...|..+ +-..|+|..
T Consensus 187 DtisK~eL~~FK~kimsEL~sngv~IYqfPtD 218 (406)
T KOG3859|consen 187 DTISKEELKRFKIKIMSELVSNGVQIYQFPTD 218 (406)
T ss_pred hhhhHHHHHHHHHHHHHHHHhcCceeeeccch
Confidence 976533 444444444444322 334566654
No 465
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=96.79 E-value=0.03 Score=58.76 Aligned_cols=81 Identities=15% Similarity=0.146 Sum_probs=55.0
Q ss_pred cCeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCCcHHHHHHHHH
Q 007325 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIV 232 (608)
Q Consensus 153 ~~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~ 232 (608)
..+.+.|||||+..+ .....++..+|.+|+|++..-.-......+++.+...+...-+++|+....... .+++.
T Consensus 203 ~~~D~VIID~p~~~~--~~~~~~L~~AD~vliV~~~~~~sl~~a~r~l~~l~~~~~~~~lVv~~~~~~~~~----~~~i~ 276 (322)
T TIGR03815 203 RGGDLVVVDLPRRLT--PAAETALESADLVLVVVPADVRAVAAAARVCPELGRRNPDLRLVVRGPAPAGLD----PEEIA 276 (322)
T ss_pred hcCCEEEEeCCCCCC--HHHHHHHHHCCEEEEEcCCcHHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCC----HHHHH
Confidence 457899999999865 447788999999999998764333445556666665555566677875433222 35667
Q ss_pred HhhCCcc
Q 007325 233 TNLGAKP 239 (608)
Q Consensus 233 ~~l~~~~ 239 (608)
+.++...
T Consensus 277 ~~lg~~v 283 (322)
T TIGR03815 277 ESLGLPL 283 (322)
T ss_pred HHhCCCc
Confidence 7777543
No 466
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=96.78 E-value=0.0035 Score=76.67 Aligned_cols=118 Identities=18% Similarity=0.212 Sum_probs=64.8
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEee-cCeeEEEEeCCCCC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPGHV 166 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPG~~ 166 (608)
-..|=..|||.+|+|||||+.+. |....... .......+|+ ....+|.| -..+-.+|||+|..
T Consensus 109 Y~LPWYlviG~~gsGKtt~l~~s----gl~~pl~~---------~~~~~~~~~~---~~t~~c~wwf~~~avliDtaG~y 172 (1169)
T TIGR03348 109 YDLPWYLVIGPPGSGKTTLLQNS----GLKFPLAE---------RLGAAALRGV---GGTRNCDWWFTDEAVLIDTAGRY 172 (1169)
T ss_pred hcCCCEEEECCCCCchhHHHHhC----CCCCcCch---------hhccccccCC---CCCcccceEecCCEEEEcCCCcc
Confidence 35688999999999999999876 22111100 0000001111 01112332 33567899999932
Q ss_pred C--------chHHHHHH---H------HhcCeEEEEEcCCCCCchhH----------HHHHHHH---HhcCCCEEEEEeC
Q 007325 167 D--------FTLEVERA---L------RVLDGAICLFDSVAGVEPQS----------ETVWRQA---DKYGVPRICFVNK 216 (608)
Q Consensus 167 d--------f~~~~~~~---l------~~~D~~i~VvDa~~g~~~~t----------~~~~~~~---~~~~~p~ivviNK 216 (608)
- -..++... + +-.||+|++||+.+-..... +.-+..+ ....+|+.++++|
T Consensus 173 ~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk 252 (1169)
T TIGR03348 173 TTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTK 252 (1169)
T ss_pred ccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 1 12222222 2 33599999999985432111 1111112 2347899999999
Q ss_pred CCcCC
Q 007325 217 MDRLG 221 (608)
Q Consensus 217 ~D~~~ 221 (608)
||+..
T Consensus 253 ~Dll~ 257 (1169)
T TIGR03348 253 ADLLA 257 (1169)
T ss_pred chhhc
Confidence 99864
No 467
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=96.76 E-value=0.014 Score=59.96 Aligned_cols=92 Identities=9% Similarity=-0.012 Sum_probs=50.8
Q ss_pred cCeeEEEEeCCCCCCchH-HHHHHHHhcCeEEEEEcCCCCCchhHHHH---HHHHHh-cCCCEEEEEeCCCcCCCcHHHH
Q 007325 153 NKHRINIIDTPGHVDFTL-EVERALRVLDGAICLFDSVAGVEPQSETV---WRQADK-YGVPRICFVNKMDRLGANFFRT 227 (608)
Q Consensus 153 ~~~~i~liDTPG~~df~~-~~~~~l~~~D~~i~VvDa~~g~~~~t~~~---~~~~~~-~~~p~ivviNK~D~~~~~~~~~ 227 (608)
.++.+.||||||..-... ....++..+|.+|+++.+...-......+ ++.+.. .+.++..+++.... .....+.
T Consensus 115 ~~yD~viID~~~~~~~~~l~~~~~~~aAD~vlIp~~p~~~si~~~~~ll~~i~~~~~~~~~~i~gIv~n~r~-~~~~~~~ 193 (279)
T PRK13230 115 LGPDVVIYDILGDVVCGGFAMPLQKGLADDVYIVTTCDPMAIYAANNICKGIKRFAKRGKSALGGIIYNGRS-VIDAPDI 193 (279)
T ss_pred cCCCEEEEecCCccccCCccccccccccceEEEeccchHHHHHHHHHHHHHHHHHhhcCCCcceEEEEeccC-CCchhHH
Confidence 368899999998542211 12234566899999998874322222223 233322 35555444443321 1112456
Q ss_pred HHHHHHhhCCccEEEeccC
Q 007325 228 RDMIVTNLGAKPLVVQLPV 246 (608)
Q Consensus 228 ~~~i~~~l~~~~~~~~~pi 246 (608)
++++.+.++.... -.+|.
T Consensus 194 ~e~l~~~~g~~vl-~~Ip~ 211 (279)
T PRK13230 194 VEEFAKKIGTNVI-GKIPM 211 (279)
T ss_pred HHHHHHHhCCcEE-EECCC
Confidence 7888888887554 34553
No 468
>KOG2484 consensus GTPase [General function prediction only]
Probab=96.74 E-value=0.0011 Score=68.91 Aligned_cols=83 Identities=23% Similarity=0.282 Sum_probs=52.1
Q ss_pred CCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCC
Q 007325 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (608)
Q Consensus 87 ~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 166 (608)
.++...++|+|.+|+||||++|+|..... -..|. ..|+|.......+ +..|-|+|.||.+
T Consensus 249 lk~sIrvGViG~PNVGKSSvINsL~~~k~--C~vg~---------------~pGvT~smqeV~L---dk~i~llDsPgiv 308 (435)
T KOG2484|consen 249 LKTSIRVGIIGYPNVGKSSVINSLKRRKA--CNVGN---------------VPGVTRSMQEVKL---DKKIRLLDSPGIV 308 (435)
T ss_pred cCcceEeeeecCCCCChhHHHHHHHHhcc--ccCCC---------------Cccchhhhhheec---cCCceeccCCcee
Confidence 35567899999999999999999973322 11222 2466666555554 5789999999964
Q ss_pred Cch--HHHHHHHHhcCeEEEEEcCC
Q 007325 167 DFT--LEVERALRVLDGAICLFDSV 189 (608)
Q Consensus 167 df~--~~~~~~l~~~D~~i~VvDa~ 189 (608)
--. ..-.-+|+.++-+--+.|..
T Consensus 309 ~~~~~~~~~~~Lrn~~~i~~~~dp~ 333 (435)
T KOG2484|consen 309 PPSIDEKDALALRNCIPIGKVADPV 333 (435)
T ss_pred ecCCCccchhhhhcccccccccCcc
Confidence 211 11134556655544444443
No 469
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=96.62 E-value=0.017 Score=59.08 Aligned_cols=89 Identities=11% Similarity=-0.017 Sum_probs=49.1
Q ss_pred CeeEEEEeCCCCCCchHH-HHHHHHhcCeEEEEEcCCCCCchhHHHHHH---HH-HhcCCCEE-EEEeCCCcCCCcHHHH
Q 007325 154 KHRINIIDTPGHVDFTLE-VERALRVLDGAICLFDSVAGVEPQSETVWR---QA-DKYGVPRI-CFVNKMDRLGANFFRT 227 (608)
Q Consensus 154 ~~~i~liDTPG~~df~~~-~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~---~~-~~~~~p~i-vviNK~D~~~~~~~~~ 227 (608)
.+.+.||||||....... ...++..+|.+|+++.+...-......+++ .+ ...++++. ++.|+.. .....+.
T Consensus 115 ~yD~iiIDt~~~~~~~~~~~~~~~~aAD~viip~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~giv~n~~~--~~~~~~~ 192 (275)
T TIGR01287 115 DLDFVFYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMALYAANNICKGILKYAKSGGVRLGGLICNSRN--VDDEKEL 192 (275)
T ss_pred cCCEEEEeccCcceecceeeccccccccEEEEEecchHHHHHHHHHHHHHHHHHHhcCCCeeeEEEEcCCC--CchHHHH
Confidence 578999999986521111 112344789999999877432223323322 22 22455655 4456522 2234456
Q ss_pred HHHHHHhhCCccEEEecc
Q 007325 228 RDMIVTNLGAKPLVVQLP 245 (608)
Q Consensus 228 ~~~i~~~l~~~~~~~~~p 245 (608)
++++.+.++.... -.+|
T Consensus 193 ~e~l~~~~~~~vl-~~Ip 209 (275)
T TIGR01287 193 IDEFAKKLGTQLI-HFVP 209 (275)
T ss_pred HHHHHHHhCCceE-EECC
Confidence 7788887776533 2444
No 470
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.60 E-value=0.009 Score=61.48 Aligned_cols=126 Identities=21% Similarity=0.288 Sum_probs=68.0
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccc----cchhh-hhhcceeEeecE-----EEEee------
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATM----DWMEQ-EQERGITITSAA-----TTTYW------ 152 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~----d~~~~-e~~~giTi~~~~-----~~~~~------ 152 (608)
+.-.|.++|-.|+||||-+..|.+.........-+..+.|+- +.... -.+-|+.+-... ..+-+
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~A 217 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAA 217 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHH
Confidence 456789999999999999999964422211111112221110 11110 011222222110 00101
Q ss_pred --cCeeEEEEeCCCCC----CchHHHHHHHHhc---Ce-----EEEEEcCCCCCchhHHHHHHHHHhcC--CCE-EEEEe
Q 007325 153 --NKHRINIIDTPGHV----DFTLEVERALRVL---DG-----AICLFDSVAGVEPQSETVWRQADKYG--VPR-ICFVN 215 (608)
Q Consensus 153 --~~~~i~liDTPG~~----df~~~~~~~l~~~---D~-----~i~VvDa~~g~~~~t~~~~~~~~~~~--~p~-ivviN 215 (608)
.++.+.|+||.|.- +...++....+.+ +. +++|+||+.|... +.+++.++ +++ -++++
T Consensus 218 kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqna-----l~QAk~F~eav~l~GiIlT 292 (340)
T COG0552 218 KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNA-----LSQAKIFNEAVGLDGIILT 292 (340)
T ss_pred HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhH-----HHHHHHHHHhcCCceEEEE
Confidence 57889999999954 3566666555554 33 6777899987543 23333221 232 57899
Q ss_pred CCCc
Q 007325 216 KMDR 219 (608)
Q Consensus 216 K~D~ 219 (608)
|+|-
T Consensus 293 KlDg 296 (340)
T COG0552 293 KLDG 296 (340)
T ss_pred eccc
Confidence 9993
No 471
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.58 E-value=0.013 Score=61.02 Aligned_cols=125 Identities=21% Similarity=0.282 Sum_probs=65.5
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCccc-ceeeccCC---ccccchhh-hhhcceeEeecEEEE-------------e
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYK-IGEVHEGT---ATMDWMEQ-EQERGITITSAATTT-------------Y 151 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~-~g~~~~g~---~~~d~~~~-e~~~giTi~~~~~~~-------------~ 151 (608)
.-.|.+||-.|+||||.+-.|.++...... ..-+...+ ...|..+. -.+.++.+..++... .
T Consensus 101 psVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fK 180 (483)
T KOG0780|consen 101 PSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFK 180 (483)
T ss_pred CcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHH
Confidence 347889999999999999999754221111 11111111 01122221 112223332222111 1
Q ss_pred ecCeeEEEEeCCCCCC----chHHHHHHHHh--cCeEEEEEcCCCCCchhHHHHHHHHHhcC--CCE-EEEEeCCCc
Q 007325 152 WNKHRINIIDTPGHVD----FTLEVERALRV--LDGAICLFDSVAGVEPQSETVWRQADKYG--VPR-ICFVNKMDR 219 (608)
Q Consensus 152 ~~~~~i~liDTPG~~d----f~~~~~~~l~~--~D~~i~VvDa~~g~~~~t~~~~~~~~~~~--~p~-ivviNK~D~ 219 (608)
-+++.+.|+||.|... ...|+...... -|-+|+|+||+-|.... .++..++ +-+ -++++|+|-
T Consensus 181 ke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae-----~Qa~aFk~~vdvg~vIlTKlDG 252 (483)
T KOG0780|consen 181 KENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAE-----AQARAFKETVDVGAVILTKLDG 252 (483)
T ss_pred hcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHH-----HHHHHHHHhhccceEEEEeccc
Confidence 2578999999999543 22233222222 28999999999764321 1222221 222 577899995
No 472
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.42 E-value=0.0085 Score=56.69 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=21.1
Q ss_pred CceeEEEEcCCCCchHHHHHHHH
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll 111 (608)
+.+.++|+|.+|+|||||+++|+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li 27 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLI 27 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHH
Confidence 45689999999999999999997
No 473
>PRK13695 putative NTPase; Provisional
Probab=96.41 E-value=0.0083 Score=56.88 Aligned_cols=35 Identities=11% Similarity=0.140 Sum_probs=27.9
Q ss_pred EEEEc---CCCCCchhHHHHHHHHHhcCCCEEEEEeCC
Q 007325 183 ICLFD---SVAGVEPQSETVWRQADKYGVPRICFVNKM 217 (608)
Q Consensus 183 i~VvD---a~~g~~~~t~~~~~~~~~~~~p~ivviNK~ 217 (608)
++++| ..+....+..+.+..+.+.+.|+++++||.
T Consensus 99 ~lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~~ 136 (174)
T PRK13695 99 VIIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHRR 136 (174)
T ss_pred EEEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECch
Confidence 46889 666666777778888878899999999984
No 474
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=96.38 E-value=0.0017 Score=67.23 Aligned_cols=26 Identities=15% Similarity=0.258 Sum_probs=22.4
Q ss_pred CCCCceeEEEEcCCCCchHHHHHHHH
Q 007325 86 PLKDYRNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 86 ~~~~~~~i~ivG~~~~GKTTL~~~ll 111 (608)
..++..-|++||++|+||||++|.|-
T Consensus 303 ~dkkqISVGfiGYPNvGKSSiINTLR 328 (572)
T KOG2423|consen 303 SDKKQISVGFIGYPNVGKSSIINTLR 328 (572)
T ss_pred cCccceeeeeecCCCCchHHHHHHHh
Confidence 34455789999999999999999995
No 475
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.38 E-value=0.015 Score=69.58 Aligned_cols=125 Identities=20% Similarity=0.212 Sum_probs=67.9
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEee-cCeeEEEEeCCCCC-
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPGHV- 166 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPG~~- 166 (608)
..|=-.+||++|+||||++... |....... .+...|... ....+|+| -...-.+|||.|-.
T Consensus 124 eLPWy~viG~pgsGKTtal~~s----gl~Fpl~~------------~~~~~~~~~-~gT~~cdwwf~deaVlIDtaGry~ 186 (1188)
T COG3523 124 ELPWYMVIGPPGSGKTTALLNS----GLQFPLAE------------QMGALGLAG-PGTRNCDWWFTDEAVLIDTAGRYI 186 (1188)
T ss_pred cCCceEEecCCCCCcchHHhcc----cccCcchh------------hhccccccC-CCCcccCcccccceEEEcCCccee
Confidence 3566789999999999998654 22111110 111111111 11233433 35568899999931
Q ss_pred -----Cc--hHHHH---------HHHHhcCeEEEEEcCCCCCch--hHH-HHH-------HHH---HhcCCCEEEEEeCC
Q 007325 167 -----DF--TLEVE---------RALRVLDGAICLFDSVAGVEP--QSE-TVW-------RQA---DKYGVPRICFVNKM 217 (608)
Q Consensus 167 -----df--~~~~~---------~~l~~~D~~i~VvDa~~g~~~--~t~-~~~-------~~~---~~~~~p~ivviNK~ 217 (608)
+. ..++. +..+-.||+|+-+|..+-... +.. .+. +.+ .....|+.+++||+
T Consensus 187 ~q~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~ 266 (1188)
T COG3523 187 TQDSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKA 266 (1188)
T ss_pred cccCcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecc
Confidence 11 11222 223456999999998853322 111 111 112 23578999999999
Q ss_pred CcCCCcHHHHHHHH
Q 007325 218 DRLGANFFRTRDMI 231 (608)
Q Consensus 218 D~~~~~~~~~~~~i 231 (608)
|+... |.+.+..+
T Consensus 267 Dll~G-F~efF~~l 279 (1188)
T COG3523 267 DLLPG-FEEFFGSL 279 (1188)
T ss_pred ccccc-HHHHHhcc
Confidence 98752 33433333
No 476
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.37 E-value=0.0047 Score=58.63 Aligned_cols=42 Identities=14% Similarity=0.085 Sum_probs=34.6
Q ss_pred CeEEEEEcCCCCCchhHHHHHHH--HHhcCCCEEEEEeCCCcCC
Q 007325 180 DGAICLFDSVAGVEPQSETVWRQ--ADKYGVPRICFVNKMDRLG 221 (608)
Q Consensus 180 D~~i~VvDa~~g~~~~t~~~~~~--~~~~~~p~ivviNK~D~~~ 221 (608)
|++++|+|+.+........+.+. +...+.|+++|+||+|+..
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCC
Confidence 78999999998877776666666 4456799999999999964
No 477
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=96.26 E-value=0.02 Score=53.36 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=20.4
Q ss_pred ceeEEEEcCCCCchHHHHHHHH
Q 007325 90 YRNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll 111 (608)
.+.++|+|..|+|||||+++|+
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv 23 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLV 23 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHH
Confidence 4689999999999999999996
No 478
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=96.14 E-value=0.071 Score=54.49 Aligned_cols=85 Identities=9% Similarity=-0.065 Sum_probs=47.9
Q ss_pred cCeeEEEEeCCCCCCchH-HHHHHHHhcCeEEEEEcCCCCCchhHHHHH---HHHH-hcCCCEE-EEEeCCCcCCCcHHH
Q 007325 153 NKHRINIIDTPGHVDFTL-EVERALRVLDGAICLFDSVAGVEPQSETVW---RQAD-KYGVPRI-CFVNKMDRLGANFFR 226 (608)
Q Consensus 153 ~~~~i~liDTPG~~df~~-~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~---~~~~-~~~~p~i-vviNK~D~~~~~~~~ 226 (608)
+.+.+.||||||..-... ....++..+|.+|+++.+...-......++ +... ..++++. +++|+... ....+
T Consensus 116 ~~yD~ilID~~~~~~~~~l~~~~a~~aad~vlIp~~~e~~sl~g~~~ll~~i~~~~~~~~l~i~giv~n~~~~--~~~~e 193 (274)
T PRK13235 116 WNLDYVFYDVLGDVVCGGFAMPIRDGKAEEIYIVCSGEMMAMYAANNICKGILKYADAGGVRLGGLICNSRKV--DNERE 193 (274)
T ss_pred CCCCEEEEECCCCCccCCcccccccccccEEEEEecCchhHHHHHHHHHHHHHHHhhcCCCceeEEEEecCCC--CchHH
Confidence 458999999988542111 111234478999999977532222222233 3332 2345443 67797531 12356
Q ss_pred HHHHHHHhhCCcc
Q 007325 227 TRDMIVTNLGAKP 239 (608)
Q Consensus 227 ~~~~i~~~l~~~~ 239 (608)
.++++++.++...
T Consensus 194 ~~~~l~~~~~~~l 206 (274)
T PRK13235 194 MIEELARKIGTQM 206 (274)
T ss_pred HHHHHHHHcCCce
Confidence 6778888887643
No 479
>PRK01889 GTPase RsgA; Reviewed
Probab=96.11 E-value=0.008 Score=63.89 Aligned_cols=65 Identities=25% Similarity=0.265 Sum_probs=37.6
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCc
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 168 (608)
..++++|.+|+|||||+|.|+.... ...|.+.. +. .+.+..|.......+..+ ..++||||...|
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~~--~~~G~i~~-----~~---~~g~~tt~~~~l~~l~~~---~~l~DtpG~~~~ 260 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEEV--QKTGAVRE-----DD---SKGRHTTTHRELHPLPSG---GLLIDTPGMREL 260 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhcc--cceeeEEE-----CC---CCCcchhhhccEEEecCC---CeecCCCchhhh
Confidence 5899999999999999999973322 22233211 00 011223333333333222 368899998654
No 480
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=96.11 E-value=0.027 Score=57.58 Aligned_cols=81 Identities=11% Similarity=0.090 Sum_probs=48.3
Q ss_pred cCeeEEEEeCCCCCCchHHHHHHHH------hcCeEEEEEcCCCCCchhHHHHH----HHHHhcCCCEE-EEEeCCCcCC
Q 007325 153 NKHRINIIDTPGHVDFTLEVERALR------VLDGAICLFDSVAGVEPQSETVW----RQADKYGVPRI-CFVNKMDRLG 221 (608)
Q Consensus 153 ~~~~i~liDTPG~~df~~~~~~~l~------~~D~~i~VvDa~~g~~~~t~~~~----~~~~~~~~p~i-vviNK~D~~~ 221 (608)
+.+.+.+|||+|.. +..++. .+|.+|+++++..---.....++ +.....+++++ +|+|+.. .
T Consensus 117 ~~yD~iliD~~~~~-----~~~al~~~~~~~aad~viIp~~p~~~sl~g~~~l~~~i~~~~~~~~l~~~Giv~n~~~--~ 189 (275)
T PRK13233 117 DDLDFVFFDVLGDV-----VCGGFAMPIRDGKAQEVYIVASGEMMAIYAANNICKGLVKYAEQSGVRLGGIICNSRN--V 189 (275)
T ss_pred CCCCEEEEecCCce-----eeccccccchhccCceEEEeccccHHHHHHHHHHHHHHHHHHhcCCCceeEEEeeCCC--C
Confidence 45889999998743 222333 78999999987632222222222 22334566665 7789743 1
Q ss_pred CcHHHHHHHHHHhhCCccE
Q 007325 222 ANFFRTRDMIVTNLGAKPL 240 (608)
Q Consensus 222 ~~~~~~~~~i~~~l~~~~~ 240 (608)
....++++++.+.++....
T Consensus 190 ~~~~~~~e~l~~~~~~~~l 208 (275)
T PRK13233 190 DGELELLEEFTDAIGTQMI 208 (275)
T ss_pred CcHHHHHHHHHHHcCCcee
Confidence 2234578888888876543
No 481
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=96.08 E-value=0.075 Score=53.95 Aligned_cols=86 Identities=12% Similarity=-0.061 Sum_probs=51.0
Q ss_pred cCeeEEEEeCCCCCCchHHH-HHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEE-EEEeCCCcCCCcHHHHHHH
Q 007325 153 NKHRINIIDTPGHVDFTLEV-ERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGANFFRTRDM 230 (608)
Q Consensus 153 ~~~~i~liDTPG~~df~~~~-~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~i-vviNK~D~~~~~~~~~~~~ 230 (608)
+++.+.||||||........ ...+..+|.+|+++.+..--......+++.+...+.+.. ++.|+.+.. ...+.+++
T Consensus 112 ~~yD~ViIDt~~~~~~~~~~~~~~~~aaD~vlip~~p~~~si~~~~~~~~~i~~~~~~~~~vv~~~~~~~--~~~~~~~~ 189 (264)
T PRK13231 112 EDIDVVIYDVLGDVVCGGFSVPLREDYADEVYIVTSGEYMSLYAANNIARGIKKLKGKLGGIICNCRGID--NEVEIVSE 189 (264)
T ss_pred CCCCEEEEecCCCceEccccccccccccceeEEEecCchhHHHHHHHHHHHHHHcCCcceEEEEcCCCCc--cHHHHHHH
Confidence 46889999999865321111 111258899999997764333344445555555554443 455655532 24556778
Q ss_pred HHHhhCCccE
Q 007325 231 IVTNLGAKPL 240 (608)
Q Consensus 231 i~~~l~~~~~ 240 (608)
+.+.++....
T Consensus 190 l~~~~~~~vl 199 (264)
T PRK13231 190 FASRIGSRII 199 (264)
T ss_pred HHHHhCCCeE
Confidence 8877776543
No 482
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=96.04 E-value=0.02 Score=58.52 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCchHHHHHHHHHh
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFY 113 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~ 113 (608)
+.|+|+|..|+|||||+.+|+..
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~ 24 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDR 24 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999743
No 483
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=96.01 E-value=0.09 Score=51.78 Aligned_cols=66 Identities=15% Similarity=0.024 Sum_probs=49.5
Q ss_pred eeEEEEeCCCCCCchHH-HHHHHHh--cCeEEEEEcCCCCCchhHHHHHHHHHhcCCCE-EEEEeCCCcC
Q 007325 155 HRINIIDTPGHVDFTLE-VERALRV--LDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRL 220 (608)
Q Consensus 155 ~~i~liDTPG~~df~~~-~~~~l~~--~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~-ivviNK~D~~ 220 (608)
+.+.++|||........ +...+.. +|.+++|+.........+...++.+...+.+. -+|+|++...
T Consensus 114 yD~IIiD~pp~~~~~~~l~~~~l~~~~~~~vllV~~p~~~s~~~~~~~l~~l~~~~~~~~glVlN~~~~~ 183 (217)
T cd02035 114 YDVIVFDTAPTGHTLRLLVRELLTDPERTSFRLVTLPEKLPLYETERAITELALYGIPVDAVVVNRVLPA 183 (217)
T ss_pred CCEEEECCCCchHHHHHHHHHHccCCCceEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCc
Confidence 89999999975443322 2233333 47899999998877788888999999988875 5788998755
No 484
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=95.99 E-value=0.034 Score=52.00 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCchHHHHHHHHH
Q 007325 91 RNIGIMAHIDAGKTTTTERVLF 112 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~ 112 (608)
+.++|+|++|+|||||+++|+.
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~ 23 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIP 23 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999974
No 485
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=95.96 E-value=0.048 Score=53.71 Aligned_cols=121 Identities=15% Similarity=0.151 Sum_probs=65.0
Q ss_pred cCCCCchHHHHHHHHHh---hCCcccceeeccCCccccchhhhhhcc-----eeEeecE-E-EE-------eecCeeEEE
Q 007325 97 AHIDAGKTTTTERVLFY---TGRNYKIGEVHEGTATMDWMEQEQERG-----ITITSAA-T-TT-------YWNKHRINI 159 (608)
Q Consensus 97 G~~~~GKTTL~~~ll~~---~g~~~~~g~~~~g~~~~d~~~~e~~~g-----iTi~~~~-~-~~-------~~~~~~i~l 159 (608)
...|+||||++-.|... .|.....-.-++......|.....+.| +.+.... . .+ .-.++.+.|
T Consensus 9 ~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W~~~a~~~~~~~~~~~V~~~~e~~~l~~~~e~a~~~~~d~Vl 88 (231)
T PF07015_consen 9 SKGGAGKTTAAMALASELAARGARVALIDADPNQPLAKWAENAQRPGAWPDRIEVYEADELTILEDAYEAAEASGFDFVL 88 (231)
T ss_pred CCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHHHHhccccCCCCCCeeEEeccchhhHHHHHHHHHhcCCCEEE
Confidence 34689999999988522 232222222233334444443333332 1111100 0 00 003568999
Q ss_pred EeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchh---HHHHHHHH---HhcCCCEEEEEeCCCc
Q 007325 160 IDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQ---SETVWRQA---DKYGVPRICFVNKMDR 219 (608)
Q Consensus 160 iDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~---t~~~~~~~---~~~~~p~ivviNK~D~ 219 (608)
+||+|.... ....++..+|.+|+-.-.+.---.+ +...+..+ ....+|.-+++|+++-
T Consensus 89 vDleG~as~--~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~ 152 (231)
T PF07015_consen 89 VDLEGGASE--LNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPA 152 (231)
T ss_pred EeCCCCCch--hHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCc
Confidence 999997663 3555677899998866544322222 22222222 2457899999999973
No 486
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.94 E-value=0.15 Score=47.15 Aligned_cols=59 Identities=24% Similarity=0.207 Sum_probs=35.1
Q ss_pred HHHHHHHHhcCeEEEEEcCCCCCchhH---HHHHHHHHhcCCCEEEEEeCCCcCCCcHHHHHHHHHHhh
Q 007325 170 LEVERALRVLDGAICLFDSVAGVEPQS---ETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNL 235 (608)
Q Consensus 170 ~~~~~~l~~~D~~i~VvDa~~g~~~~t---~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l 235 (608)
..+.+|+..+|.+| ||=.-.++..+ .+.++.+...+.|.|.++-+-++ +-.++++++..
T Consensus 92 ~al~rA~~~aDvII--IDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr-----~P~v~~ik~~~ 153 (179)
T COG1618 92 PALRRALEEADVII--IDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSR-----HPLVQRIKKLG 153 (179)
T ss_pred HHHHHHhhcCCEEE--EecccchhhccHHHHHHHHHHhcCCCcEEEEEecccC-----ChHHHHhhhcC
Confidence 33455666667654 56654443333 34456666788998888877665 23566666543
No 487
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=95.91 E-value=0.23 Score=50.79 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=20.7
Q ss_pred CceeEEEEcCCCCchHHHHHHHH
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll 111 (608)
...||.++|..++|||||+..|-
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klq 73 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQ 73 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhh
Confidence 45799999999999999999993
No 488
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=95.78 E-value=0.12 Score=52.40 Aligned_cols=86 Identities=12% Similarity=0.003 Sum_probs=57.6
Q ss_pred cCeeEEEEeCCCCCCch------HHH---HHHHHh--cCeEEEEEcCCCCCchhHHHHHHHHHhcCCCE-EEEEeCCCcC
Q 007325 153 NKHRINIIDTPGHVDFT------LEV---ERALRV--LDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRL 220 (608)
Q Consensus 153 ~~~~i~liDTPG~~df~------~~~---~~~l~~--~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~-ivviNK~D~~ 220 (608)
..+.+.++|||.-.... ..+ ...+.. .+.+++|+....-....+...+..+...++|+ -+|+||+.-.
T Consensus 123 ~~yD~VVvDtpPtg~tlrlL~lp~~l~~~~~~l~d~~~~~~vlV~~p~~~~~~e~~r~~~~L~~~g~~v~gvV~N~v~~~ 202 (254)
T cd00550 123 AEYDVVVFDTAPTGHTLRLLSLPTVLSWAREILSDPERTSFRLVCIPEKMSLYETERAIQELAKYGIDVDAVIVNQLLPE 202 (254)
T ss_pred CCCCEEEECCCCcHHHHHHHHhHHHHHHHHHHhcCCcceEEEEEeCCChhHHHHHHHHHHHHHHCCCCCCEEEEecCccc
Confidence 46899999999843211 111 111221 35788998888766777888899999999987 6789998753
Q ss_pred CC---c--------HHHHHHHHHHhhCCc
Q 007325 221 GA---N--------FFRTRDMIVTNLGAK 238 (608)
Q Consensus 221 ~~---~--------~~~~~~~i~~~l~~~ 238 (608)
.. . ..+.++++++.|+..
T Consensus 203 ~~~~~~~~~~~~~~q~~~l~~~~~~~~~~ 231 (254)
T cd00550 203 DVTNCPFLEARREIQQKYLEEIEELFSDL 231 (254)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 32 1 345677777777543
No 489
>PRK13236 nitrogenase reductase; Reviewed
Probab=95.72 E-value=0.13 Score=53.16 Aligned_cols=86 Identities=9% Similarity=-0.023 Sum_probs=47.7
Q ss_pred cCeeEEEEeCCCCCCc-hHHHHHHHHhcCeEEEEEcCCCCCchhHH----HHHHHHHhcCCCEE-EEEeCCCcCCCcHHH
Q 007325 153 NKHRINIIDTPGHVDF-TLEVERALRVLDGAICLFDSVAGVEPQSE----TVWRQADKYGVPRI-CFVNKMDRLGANFFR 226 (608)
Q Consensus 153 ~~~~i~liDTPG~~df-~~~~~~~l~~~D~~i~VvDa~~g~~~~t~----~~~~~~~~~~~p~i-vviNK~D~~~~~~~~ 226 (608)
+++.+.+|||+|...- ......++..+|.+|+|+.....-..... .+.+.....+++++ +|+|+.+.. +..+
T Consensus 120 ~~yD~vliD~~~~~~~~~~~~~~~l~aAD~vIIvttpe~~sl~g~~~~~~~l~k~~~~~~l~i~gIv~Nr~~~~--~~~~ 197 (296)
T PRK13236 120 QDLDFVSYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMAMYAANNIARGILKYAHTGGVRLGGLICNSRNVD--REIE 197 (296)
T ss_pred ccCCEEEEeccccceeccccccchhccCCEEEEecCcchHHHHHHHHHHHHHHHHhhCCCceeEEEEecCCCCc--chHH
Confidence 5788999999864210 00111125688999999877532221111 22223233456654 667975322 1225
Q ss_pred HHHHHHHhhCCccE
Q 007325 227 TRDMIVTNLGAKPL 240 (608)
Q Consensus 227 ~~~~i~~~l~~~~~ 240 (608)
+++++++.++....
T Consensus 198 ile~l~~~~g~~vl 211 (296)
T PRK13236 198 LIETLAKRLNTQMI 211 (296)
T ss_pred HHHHHHHHhCccce
Confidence 78888888886543
No 490
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=95.63 E-value=0.056 Score=55.94 Aligned_cols=89 Identities=12% Similarity=0.043 Sum_probs=48.8
Q ss_pred cCeeEEEEeCCCCCCchHHHHHH--HHhcCeEEEEEcCCCCCchhHHHHHHHHHh----cCCCEE-EEEeCCCcCCCcHH
Q 007325 153 NKHRINIIDTPGHVDFTLEVERA--LRVLDGAICLFDSVAGVEPQSETVWRQADK----YGVPRI-CFVNKMDRLGANFF 225 (608)
Q Consensus 153 ~~~~i~liDTPG~~df~~~~~~~--l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~----~~~p~i-vviNK~D~~~~~~~ 225 (608)
+++.+.||||+|..-.. ..... ...+|.+|+++....--......+++.+.. .++..+ +++|+.. .....
T Consensus 118 ~~yD~IlID~~~~~~~n-al~~~~~~~aAD~vIIPv~pe~~Sl~gl~~l~~~i~~~~~~~~l~~~gIV~N~~r--t~~~~ 194 (295)
T PRK13234 118 DDVDYVSYDVLGDVVCG-GFAMPIRENKAQEIYIVMSGEMMALYAANNIAKGILKYANSGGVRLGGLICNERQ--TDREL 194 (295)
T ss_pred ccCCEEEEEcCCCceEC-CCccccccccCceEEEecCccHHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCC--CchHH
Confidence 46789999998742110 11111 127899999998764222222233333322 234443 7788533 23335
Q ss_pred HHHHHHHHhhCCccEEEecc
Q 007325 226 RTRDMIVTNLGAKPLVVQLP 245 (608)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~p 245 (608)
++++++++.++..... .+|
T Consensus 195 ~~~e~l~e~~g~~ll~-~Ip 213 (295)
T PRK13234 195 ELAEALAARLGSKLIH-FVP 213 (295)
T ss_pred HHHHHHHHHhCCceEE-ECC
Confidence 6788888888865432 444
No 491
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=95.63 E-value=0.02 Score=50.21 Aligned_cols=20 Identities=15% Similarity=0.248 Sum_probs=18.6
Q ss_pred eEEEEcCCCCchHHHHHHHH
Q 007325 92 NIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll 111 (608)
.|+++|..|+|||+|+.++.
T Consensus 2 kvv~~G~~gvGKt~l~~~~~ 21 (124)
T smart00010 2 KVVGIGDSGVGKVGKSARFV 21 (124)
T ss_pred EEEEECCCChhHHHHHHHHh
Confidence 68999999999999999994
No 492
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=95.58 E-value=0.092 Score=51.30 Aligned_cols=57 Identities=19% Similarity=0.271 Sum_probs=39.2
Q ss_pred eEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEE-EEEe
Q 007325 156 RINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVN 215 (608)
Q Consensus 156 ~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~i-vviN 215 (608)
.+.|||||...+. ......+..+|.+|+|+.+...-.......++.++ +.+++ +|+|
T Consensus 150 D~IiiD~pp~~~~-~~~~~l~~~aD~viiV~~~~~~~~~~~~~~~~~l~--~~~~~G~v~N 207 (207)
T TIGR03018 150 RIIIIDTPPLLVF-SEARALARLVGQIVLVVEEGRTTQEAVKEALSALE--SCKVLGVVLN 207 (207)
T ss_pred CEEEEECCCCcch-hHHHHHHHhCCEEEEEEECCCCCHHHHHHHHHHhc--CCCeEEEEeC
Confidence 6899999976653 34444566789999999888766666677777766 45554 3444
No 493
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=95.53 E-value=0.29 Score=53.80 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=20.2
Q ss_pred ceeEEEEcCCCCchHHHHHHHH
Q 007325 90 YRNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll 111 (608)
-++|.|+|..++|||||+.+|.
T Consensus 25 ~k~vlvlG~~~~GKttli~~L~ 46 (472)
T PF05783_consen 25 EKSVLVLGDKGSGKTTLIARLQ 46 (472)
T ss_pred CceEEEEeCCCCchHHHHHHhh
Confidence 4799999999999999999984
No 494
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.47 E-value=0.13 Score=52.83 Aligned_cols=26 Identities=27% Similarity=0.282 Sum_probs=23.4
Q ss_pred CCCCceeEEEEcCCCCchHHHHHHHH
Q 007325 86 PLKDYRNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 86 ~~~~~~~i~ivG~~~~GKTTL~~~ll 111 (608)
+..+.+++.|+|.+|-|||++++++.
T Consensus 57 ~~~Rmp~lLivG~snnGKT~Ii~rF~ 82 (302)
T PF05621_consen 57 KRHRMPNLLIVGDSNNGKTMIIERFR 82 (302)
T ss_pred cccCCCceEEecCCCCcHHHHHHHHH
Confidence 44578999999999999999999996
No 495
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.44 E-value=0.014 Score=45.24 Aligned_cols=20 Identities=20% Similarity=0.149 Sum_probs=19.0
Q ss_pred eEEEEcCCCCchHHHHHHHH
Q 007325 92 NIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll 111 (608)
...|.|+.|+|||||++++.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999996
No 496
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=95.41 E-value=0.26 Score=50.02 Aligned_cols=63 Identities=11% Similarity=0.085 Sum_probs=45.4
Q ss_pred CeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEE---EEEeCCC
Q 007325 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI---CFVNKMD 218 (608)
Q Consensus 154 ~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~i---vviNK~D 218 (608)
.+.+.|+|||+-.. ..+..++..+|.+|+|....-.--.......+.+...+.+.. +|+|+++
T Consensus 112 ~~D~iliD~~aGl~--~~~~~~~~~sd~~viVt~pe~~si~~A~~~i~~~~~~~~~~~~~~vV~N~v~ 177 (262)
T COG0455 112 LYDYILIDTGAGLS--RDTLSFILSSDELVIVTTPEPTSITDAYKTIKILSKLGLDLLGRRVVLNRVR 177 (262)
T ss_pred cCCEEEEeCCCCcc--HHHHHHHHhcCcEEEEeCCCcchHHHHHHHHHHHHHcCCccccceEEEEecc
Confidence 35799999998544 566677777799999987654333345556677777777753 8899998
No 497
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=95.32 E-value=0.68 Score=47.96 Aligned_cols=85 Identities=19% Similarity=0.181 Sum_probs=49.2
Q ss_pred CeeEEEEeCCCCC---CchHHHHHHHHhcCeEEEEEcCCCCCc---hhHHHHHHHHHhcC--CC-EEEEEeCCCcCCCcH
Q 007325 154 KHRINIIDTPGHV---DFTLEVERALRVLDGAICLFDSVAGVE---PQSETVWRQADKYG--VP-RICFVNKMDRLGANF 224 (608)
Q Consensus 154 ~~~i~liDTPG~~---df~~~~~~~l~~~D~~i~VvDa~~g~~---~~t~~~~~~~~~~~--~p-~ivviNK~D~~~~~~ 224 (608)
++.+.||||+|.. .+. ...++..+|.+|+|++...... ......++.+.+.+ ++ .-+|+|+.+...
T Consensus 122 ~yD~IliD~~~~~~~~g~~--~~~a~~~Ad~viVvt~~e~~sl~~a~~l~k~v~~~~~~~~~v~i~GVV~N~~~~~~--- 196 (296)
T TIGR02016 122 DFDFVLMDFLGDVVCGGFA--TPLARSLAEEVIVIGSNDRQSLYVANNICNAVEYFRKLGGRVGLLGLVVNRDDGSG--- 196 (296)
T ss_pred cCCEEEEecCCCccccccc--cchhhhhCCeEEEEecchHHHHHHHHHHHHHHHHHHHcCCCCcceEEEEeCCCCcc---
Confidence 6899999998743 121 2224457899999987653221 12333444555553 44 457889997522
Q ss_pred HHHHHHHHHhhCCccEEEeccC
Q 007325 225 FRTRDMIVTNLGAKPLVVQLPV 246 (608)
Q Consensus 225 ~~~~~~i~~~l~~~~~~~~~pi 246 (608)
..+++.+.++...+ ..+|.
T Consensus 197 --~~~~~~~~~~i~vL-g~IP~ 215 (296)
T TIGR02016 197 --EAQAFAREVGIPVL-AAIPA 215 (296)
T ss_pred --HHHHHHHHcCCCeE-EECCC
Confidence 33555666665443 33664
No 498
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=95.27 E-value=0.071 Score=57.32 Aligned_cols=23 Identities=43% Similarity=0.536 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCchHHHHHHHHHh
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFY 113 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~ 113 (608)
+.|+|+|..|+|||||+++|+..
T Consensus 2 kVi~IvG~sgSGKTTLiekLI~~ 24 (452)
T PRK14495 2 RVYGIIGWKDAGKTGLVERLVAA 24 (452)
T ss_pred cEEEEEecCCCCHHHHHHHHHHH
Confidence 57999999999999999999733
No 499
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.23 E-value=0.019 Score=58.97 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=21.6
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHh
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFY 113 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~ 113 (608)
+.+.|+|+|++|+||||++..|...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~ 217 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAAR 217 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999743
No 500
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=95.19 E-value=0.051 Score=41.14 Aligned_cols=41 Identities=20% Similarity=0.501 Sum_probs=22.4
Q ss_pred hcCeEEEEEcCCC--CCchhHH-HHHHHHHh-c-CCCEEEEEeCCC
Q 007325 178 VLDGAICLFDSVA--GVEPQSE-TVWRQADK-Y-GVPRICFVNKMD 218 (608)
Q Consensus 178 ~~D~~i~VvDa~~--g~~~~t~-~~~~~~~~-~-~~p~ivviNK~D 218 (608)
..+.+++++|.++ |...... .+++.++. . +.|+++|+||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 4488899999995 4322222 23344443 3 899999999998
Done!