Query 007325
Match_columns 608
No_of_seqs 474 out of 2988
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 22:56:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007325.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007325hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fn5_A EF-G 1, elongation fact 100.0 2E-105 8E-110 916.6 52.2 523 84-606 7-543 (709)
2 2rdo_7 EF-G, elongation factor 100.0 2E-101 6E-106 880.6 61.6 521 86-606 6-537 (704)
3 2xex_A Elongation factor G; GT 100.0 4E-100 1E-104 869.3 57.0 520 85-606 5-525 (693)
4 1dar_A EF-G, elongation factor 100.0 5E-100 2E-104 867.7 49.0 519 85-606 7-526 (691)
5 3vqt_A RF-3, peptide chain rel 100.0 6.4E-99 2E-103 836.1 31.8 486 87-596 28-526 (548)
6 2dy1_A Elongation factor G; tr 100.0 3.4E-90 1.2E-94 784.5 56.4 489 87-606 6-496 (665)
7 3j25_A Tetracycline resistance 100.0 7.8E-95 2.7E-99 819.0 11.9 460 89-606 1-460 (638)
8 1n0u_A EF-2, elongation factor 100.0 6.3E-81 2.1E-85 724.2 31.7 493 87-600 16-596 (842)
9 3tr5_A RF-3, peptide chain rel 100.0 1.9E-78 6.6E-83 668.6 43.8 459 88-570 11-476 (528)
10 2h5e_A Peptide chain release f 100.0 8.3E-79 2.8E-83 672.3 37.2 459 88-570 11-477 (529)
11 2ywe_A GTP-binding protein LEP 100.0 8.3E-65 2.8E-69 564.3 41.2 362 87-569 3-380 (600)
12 3cb4_D GTP-binding protein LEP 100.0 6.6E-64 2.3E-68 558.2 40.1 362 88-570 2-379 (599)
13 1g7s_A Translation initiation 100.0 1.5E-39 5E-44 362.7 17.2 332 89-511 4-373 (594)
14 3j2k_7 ERF3, eukaryotic polype 100.0 2.9E-35 9.8E-40 318.9 29.5 278 86-476 13-329 (439)
15 2c78_A Elongation factor TU-A; 100.0 9E-36 3.1E-40 320.3 24.9 272 88-474 9-308 (405)
16 1d2e_A Elongation factor TU (E 100.0 1E-35 3.5E-40 318.8 22.4 270 90-474 3-290 (397)
17 1jny_A EF-1-alpha, elongation 100.0 1.9E-35 6.6E-40 320.3 22.8 278 88-476 4-319 (435)
18 3mca_A HBS1, elongation factor 100.0 1.6E-34 5.3E-39 323.3 17.8 276 86-476 173-491 (592)
19 2elf_A Protein translation elo 100.0 4.1E-34 1.4E-38 302.7 19.6 242 91-472 22-275 (370)
20 3p26_A Elongation factor 1 alp 100.0 6.8E-33 2.3E-37 304.2 28.0 281 88-475 31-363 (483)
21 1zun_B Sulfate adenylate trans 100.0 1.2E-32 4E-37 298.4 27.4 277 88-476 22-328 (434)
22 1r5b_A Eukaryotic peptide chai 100.0 1.4E-33 4.7E-38 308.1 19.9 277 88-476 41-358 (467)
23 3avx_A Elongation factor TS, e 100.0 2.7E-33 9.3E-38 323.6 23.2 274 87-475 293-582 (1289)
24 1kk1_A EIF2gamma; initiation o 100.0 1.6E-32 5.3E-37 295.5 26.6 257 88-475 8-317 (410)
25 1f60_A Elongation factor EEF1A 100.0 5.6E-32 1.9E-36 294.6 26.2 272 89-475 6-329 (458)
26 3izq_1 HBS1P, elongation facto 100.0 1.5E-32 5E-37 308.2 21.2 286 88-475 165-497 (611)
27 1zo1_I IF2, translation initia 100.0 9E-34 3.1E-38 308.8 5.4 302 89-521 3-334 (501)
28 1s0u_A EIF-2-gamma, translatio 100.0 5E-31 1.7E-35 283.5 25.5 256 89-475 7-315 (408)
29 3sjy_A Translation initiation 100.0 1E-30 3.4E-35 280.7 24.4 270 88-476 6-310 (403)
30 1wb1_A Translation elongation 100.0 1.6E-31 5.5E-36 292.5 15.9 261 89-473 18-284 (482)
31 3izy_P Translation initiation 100.0 2.2E-32 7.6E-37 300.2 7.6 257 89-476 3-261 (537)
32 3e3x_A BIPA; MCSG,PSI2, struct 99.9 7E-23 2.4E-27 208.6 11.5 109 457-566 2-119 (332)
33 1wf3_A GTP-binding protein; GT 99.8 1.3E-19 4.4E-24 186.4 16.3 117 89-222 6-132 (301)
34 3iev_A GTP-binding protein ERA 99.8 2.9E-19 1E-23 184.5 18.1 115 89-220 9-135 (308)
35 3qq5_A Small GTP-binding prote 99.8 2.9E-20 9.9E-25 199.1 10.6 119 86-223 30-156 (423)
36 4dhe_A Probable GTP-binding pr 99.8 2.9E-19 9.8E-24 174.9 15.1 121 85-221 24-158 (223)
37 2xtp_A GTPase IMAP family memb 99.8 1.1E-20 3.7E-25 190.3 4.2 203 87-312 19-256 (260)
38 2dyk_A GTP-binding protein; GT 99.8 5.3E-19 1.8E-23 163.2 14.4 115 90-221 1-122 (161)
39 2lkc_A Translation initiation 99.8 1.8E-19 6.3E-24 169.3 10.4 118 88-223 6-123 (178)
40 1zj6_A ADP-ribosylation factor 99.8 2.6E-18 9E-23 163.4 16.6 112 89-221 15-131 (187)
41 1upt_A ARL1, ADP-ribosylation 99.8 1.4E-18 4.8E-23 162.0 14.4 113 89-222 6-123 (171)
42 3iby_A Ferrous iron transport 99.8 5.6E-19 1.9E-23 177.5 12.2 111 90-220 1-123 (256)
43 1r8s_A ADP-ribosylation factor 99.8 6.4E-18 2.2E-22 156.5 18.4 110 92-222 2-116 (164)
44 1ega_A Protein (GTP-binding pr 99.8 4.4E-19 1.5E-23 182.6 10.5 115 89-221 7-130 (301)
45 1zd9_A ADP-ribosylation factor 99.8 6.5E-18 2.2E-22 161.0 17.7 115 88-222 20-139 (188)
46 1svi_A GTP-binding protein YSX 99.8 4.4E-18 1.5E-22 162.6 16.3 119 85-222 18-149 (195)
47 2hjg_A GTP-binding protein ENG 99.8 1.1E-18 3.6E-23 189.0 12.8 118 88-222 173-301 (436)
48 4bas_A ADP-ribosylation factor 99.8 2.2E-18 7.6E-23 165.1 13.6 118 86-222 13-142 (199)
49 2b6h_A ADP-ribosylation factor 99.8 1.3E-17 4.3E-22 159.9 18.6 114 88-222 27-145 (192)
50 1fzq_A ADP-ribosylation factor 99.8 1.9E-17 6.4E-22 157.0 19.5 114 88-222 14-132 (181)
51 2h57_A ADP-ribosylation factor 99.8 3.8E-18 1.3E-22 162.7 14.4 115 88-221 19-140 (190)
52 3i8s_A Ferrous iron transport 99.8 2E-18 6.9E-23 175.3 12.3 110 91-220 4-125 (274)
53 4dcu_A GTP-binding protein ENG 99.8 3.2E-18 1.1E-22 186.3 14.1 119 87-222 192-321 (456)
54 3t1o_A Gliding protein MGLA; G 99.8 4E-18 1.4E-22 162.7 13.1 128 88-221 12-149 (198)
55 2h17_A ADP-ribosylation factor 99.8 7.2E-18 2.5E-22 159.6 14.3 114 87-221 18-136 (181)
56 3pqc_A Probable GTP-binding pr 99.8 1.2E-17 4E-22 159.2 15.6 118 85-222 18-148 (195)
57 1mky_A Probable GTP-binding pr 99.7 5.8E-18 2E-22 183.4 15.0 113 91-220 2-123 (439)
58 2efe_B Small GTP-binding prote 99.7 1.9E-17 6.7E-22 155.8 16.7 118 88-221 10-131 (181)
59 2fg5_A RAB-22B, RAS-related pr 99.7 1.8E-17 6.1E-22 158.5 16.0 117 88-220 21-141 (192)
60 3a1s_A Iron(II) transport prot 99.7 1.1E-17 3.9E-22 168.1 14.7 112 89-220 4-123 (258)
61 1r2q_A RAS-related protein RAB 99.7 1.9E-17 6.5E-22 153.8 15.1 116 90-221 6-125 (170)
62 1z0f_A RAB14, member RAS oncog 99.7 2.7E-17 9.1E-22 154.3 16.0 118 87-220 12-133 (179)
63 1m2o_B GTP-binding protein SAR 99.7 1.8E-17 6.3E-22 158.4 15.2 111 90-221 23-138 (190)
64 2hxs_A RAB-26, RAS-related pro 99.7 3.7E-17 1.3E-21 153.5 16.7 115 89-221 5-129 (178)
65 3k53_A Ferrous iron transport 99.7 1.4E-17 4.9E-22 168.6 14.8 111 90-220 3-122 (271)
66 1ksh_A ARF-like protein 2; sma 99.7 9E-18 3.1E-22 159.3 12.5 113 89-222 17-134 (186)
67 2il1_A RAB12; G-protein, GDP, 99.7 2.6E-17 9E-22 157.4 15.8 118 86-221 22-145 (192)
68 2p5s_A RAS and EF-hand domain 99.7 2.6E-17 9.1E-22 158.2 15.7 118 87-220 25-146 (199)
69 2wji_A Ferrous iron transport 99.7 2E-17 6.8E-22 154.3 14.2 110 91-220 4-121 (165)
70 3tkl_A RAS-related protein RAB 99.7 2.7E-17 9.3E-22 157.1 15.4 117 88-222 14-136 (196)
71 1f6b_A SAR1; gtpases, N-termin 99.7 2.1E-17 7.2E-22 159.1 14.4 111 90-221 25-140 (198)
72 2x77_A ADP-ribosylation factor 99.7 4.1E-18 1.4E-22 162.2 9.3 113 89-222 21-138 (189)
73 1moz_A ARL1, ADP-ribosylation 99.7 6.6E-18 2.2E-22 159.5 10.4 114 88-222 16-134 (183)
74 2hup_A RAS-related protein RAB 99.7 5.3E-17 1.8E-21 156.7 16.7 117 87-221 26-148 (201)
75 1z0j_A RAB-22, RAS-related pro 99.7 4E-17 1.4E-21 151.7 15.4 116 90-221 6-125 (170)
76 1c1y_A RAS-related protein RAP 99.7 6.2E-17 2.1E-21 150.0 16.5 114 91-221 4-122 (167)
77 1ek0_A Protein (GTP-binding pr 99.7 5.4E-17 1.8E-21 150.7 15.9 115 91-221 4-122 (170)
78 1zbd_A Rabphilin-3A; G protein 99.7 4.3E-17 1.5E-21 157.0 15.5 118 88-221 6-127 (203)
79 3kkq_A RAS-related protein M-R 99.7 4.4E-17 1.5E-21 153.9 15.3 115 88-221 16-137 (183)
80 2hjg_A GTP-binding protein ENG 99.7 8.1E-18 2.8E-22 182.1 11.4 114 91-221 4-125 (436)
81 2fn4_A P23, RAS-related protei 99.7 6.9E-17 2.4E-21 151.7 16.3 117 86-221 5-128 (181)
82 2gf9_A RAS-related protein RAB 99.7 1.7E-17 5.8E-22 158.0 12.1 119 87-221 19-141 (189)
83 2bov_A RAla, RAS-related prote 99.7 1.6E-16 5.3E-21 153.0 19.0 116 87-221 11-133 (206)
84 2bme_A RAB4A, RAS-related prot 99.7 4E-17 1.4E-21 154.5 14.6 115 88-220 8-128 (186)
85 2erx_A GTP-binding protein DI- 99.7 9.7E-17 3.3E-21 149.3 17.0 115 90-221 3-123 (172)
86 4dsu_A GTPase KRAS, isoform 2B 99.7 9.5E-17 3.3E-21 152.0 17.0 113 90-221 4-123 (189)
87 2gj8_A MNME, tRNA modification 99.7 3.8E-17 1.3E-21 153.7 14.0 113 91-220 5-128 (172)
88 3tw8_B RAS-related protein RAB 99.7 1.3E-17 4.6E-22 156.6 10.9 117 87-221 6-127 (181)
89 3b1v_A Ferrous iron uptake tra 99.7 3E-17 1E-21 166.2 14.2 110 90-220 3-120 (272)
90 2y8e_A RAB-protein 6, GH09086P 99.7 9E-17 3.1E-21 150.7 16.3 114 90-221 14-133 (179)
91 1kao_A RAP2A; GTP-binding prot 99.7 7.7E-17 2.6E-21 149.0 15.5 112 91-221 4-122 (167)
92 1u8z_A RAS-related protein RAL 99.7 1.8E-16 6.2E-21 146.7 17.8 113 90-221 4-123 (168)
93 2fu5_C RAS-related protein RAB 99.7 2.6E-17 8.9E-22 155.5 12.1 116 88-221 6-127 (183)
94 1wms_A RAB-9, RAB9, RAS-relate 99.7 1.2E-16 4.3E-21 149.7 16.7 115 88-220 5-129 (177)
95 2oil_A CATX-8, RAS-related pro 99.7 6.4E-17 2.2E-21 154.4 14.9 119 87-221 22-144 (193)
96 3dz8_A RAS-related protein RAB 99.7 2.5E-17 8.7E-22 157.2 11.9 118 88-221 21-142 (191)
97 3o47_A ADP-ribosylation factor 99.7 4.5E-17 1.5E-21 169.6 14.7 112 90-222 165-281 (329)
98 2a9k_A RAS-related protein RAL 99.7 2.3E-16 7.9E-21 148.9 18.2 114 89-221 17-137 (187)
99 3bc1_A RAS-related protein RAB 99.7 1E-16 3.5E-21 152.3 15.8 118 87-221 8-141 (195)
100 3clv_A RAB5 protein, putative; 99.7 1.7E-16 5.9E-21 151.8 17.3 64 155-218 93-158 (208)
101 2nzj_A GTP-binding protein REM 99.7 8.8E-17 3E-21 150.3 14.8 115 90-221 4-125 (175)
102 2fh5_B SR-beta, signal recogni 99.7 1.5E-16 5E-21 154.7 16.9 125 89-235 6-144 (214)
103 2g6b_A RAS-related protein RAB 99.7 7.1E-17 2.4E-21 151.8 14.2 117 88-221 8-130 (180)
104 1ky3_A GTP-binding protein YPT 99.7 6.5E-17 2.2E-21 152.0 13.9 116 88-221 6-132 (182)
105 3t5g_A GTP-binding protein RHE 99.7 3.2E-17 1.1E-21 154.6 11.5 114 89-221 5-125 (181)
106 2ce2_X GTPase HRAS; signaling 99.7 2.6E-16 8.8E-21 145.1 17.3 112 91-221 4-122 (166)
107 3llu_A RAS-related GTP-binding 99.7 2.2E-16 7.4E-21 151.5 17.2 119 85-222 15-144 (196)
108 3cph_A RAS-related protein SEC 99.7 6E-17 2.1E-21 156.9 13.4 116 87-220 17-138 (213)
109 1g16_A RAS-related protein SEC 99.7 7.2E-17 2.5E-21 150.0 13.3 113 90-220 3-121 (170)
110 2f7s_A C25KG, RAS-related prot 99.7 6.7E-17 2.3E-21 157.4 13.6 117 87-221 22-155 (217)
111 2qu8_A Putative nucleolar GTP- 99.7 3.4E-16 1.2E-20 154.0 18.7 116 88-221 27-156 (228)
112 1z06_A RAS-related protein RAB 99.7 8.1E-17 2.8E-21 153.3 13.7 117 87-221 17-141 (189)
113 2atx_A Small GTP binding prote 99.7 6.5E-17 2.2E-21 154.5 12.8 116 88-222 16-137 (194)
114 1z08_A RAS-related protein RAB 99.7 5.9E-17 2E-21 150.8 12.1 115 89-221 5-125 (170)
115 2wjg_A FEOB, ferrous iron tran 99.7 1.3E-16 4.4E-21 151.4 14.6 112 89-220 6-125 (188)
116 1x3s_A RAS-related protein RAB 99.7 8.6E-17 3E-21 153.3 13.5 116 89-220 14-134 (195)
117 1z2a_A RAS-related protein RAB 99.7 7.1E-17 2.4E-21 149.7 12.5 115 89-221 4-123 (168)
118 2gf0_A GTP-binding protein DI- 99.7 3.4E-16 1.2E-20 149.7 17.3 116 89-221 7-128 (199)
119 1mky_A Probable GTP-binding pr 99.7 1.4E-16 4.7E-21 172.6 16.3 117 89-222 179-307 (439)
120 2a5j_A RAS-related protein RAB 99.7 9.8E-17 3.3E-21 153.1 13.2 116 88-221 19-140 (191)
121 1mh1_A RAC1; GTP-binding, GTPa 99.7 1.6E-16 5.4E-21 150.1 14.3 116 90-222 5-124 (186)
122 2ew1_A RAS-related protein RAB 99.7 1.5E-16 5.3E-21 153.7 14.5 117 87-221 23-145 (201)
123 4dcu_A GTP-binding protein ENG 99.7 3.8E-17 1.3E-21 177.8 11.5 115 89-220 22-144 (456)
124 3q72_A GTP-binding protein RAD 99.7 2.2E-16 7.4E-21 146.4 15.0 114 90-221 2-120 (166)
125 3gj0_A GTP-binding nuclear pro 99.7 1.2E-17 4.2E-22 163.4 6.8 120 87-222 12-134 (221)
126 1vg8_A RAS-related protein RAB 99.7 8E-17 2.7E-21 155.3 12.3 115 88-220 6-130 (207)
127 3q85_A GTP-binding protein REM 99.7 2.7E-16 9.3E-21 146.2 15.0 114 90-221 2-123 (169)
128 4gzl_A RAS-related C3 botulinu 99.7 9.1E-17 3.1E-21 155.4 11.9 116 88-222 28-149 (204)
129 3lxw_A GTPase IMAP family memb 99.7 1.4E-16 4.7E-21 159.2 13.5 119 90-225 21-157 (247)
130 3bwd_D RAC-like GTP-binding pr 99.7 4.7E-17 1.6E-21 153.4 9.1 116 90-222 8-127 (182)
131 2bcg_Y Protein YP2, GTP-bindin 99.7 2E-16 6.7E-21 152.8 13.7 116 88-221 6-127 (206)
132 3t5d_A Septin-7; GTP-binding p 99.7 1.6E-16 5.3E-21 161.3 13.6 201 90-310 8-267 (274)
133 3con_A GTPase NRAS; structural 99.7 4.2E-16 1.4E-20 148.2 15.8 113 90-221 21-140 (190)
134 3gee_A MNME, tRNA modification 99.7 6.4E-17 2.2E-21 176.0 11.3 113 91-222 234-358 (476)
135 2p67_A LAO/AO transport system 99.7 1.5E-17 5.1E-22 174.1 6.1 240 87-357 53-329 (341)
136 3lvq_E ARF-GAP with SH3 domain 99.7 1.8E-16 6.2E-21 174.4 14.9 114 88-222 320-438 (497)
137 3oes_A GTPase rhebl1; small GT 99.7 4.4E-17 1.5E-21 157.0 8.8 119 86-221 20-143 (201)
138 2o52_A RAS-related protein RAB 99.7 1.2E-16 4.2E-21 153.9 11.8 116 88-221 23-144 (200)
139 3cpj_B GTP-binding protein YPT 99.7 1.9E-16 6.4E-21 155.3 12.4 116 88-221 11-132 (223)
140 2atv_A RERG, RAS-like estrogen 99.7 1.1E-15 3.9E-20 146.3 17.0 115 89-221 27-146 (196)
141 2j1l_A RHO-related GTP-binding 99.7 9.8E-16 3.4E-20 149.2 16.7 115 89-222 33-153 (214)
142 3reg_A RHO-like small GTPase; 99.7 3.1E-16 1.1E-20 149.9 12.7 115 88-221 21-141 (194)
143 3ihw_A Centg3; RAS, centaurin, 99.7 2E-15 6.9E-20 143.5 17.9 108 88-220 18-132 (184)
144 3cbq_A GTP-binding protein REM 99.7 1.1E-15 3.8E-20 146.7 16.1 117 87-221 20-144 (195)
145 1xzp_A Probable tRNA modificat 99.7 2.5E-16 8.4E-21 171.5 12.9 112 91-221 244-364 (482)
146 3q3j_B RHO-related GTP-binding 99.7 2.5E-16 8.5E-21 153.6 11.3 119 86-221 23-145 (214)
147 2j0v_A RAC-like GTP-binding pr 99.7 2.7E-16 9.3E-21 152.5 11.5 115 89-222 8-128 (212)
148 4djt_A GTP-binding nuclear pro 99.7 9.4E-17 3.2E-21 156.5 8.0 117 89-221 10-131 (218)
149 4dkx_A RAS-related protein RAB 99.7 1.3E-15 4.4E-20 149.0 15.7 115 91-221 14-132 (216)
150 2fv8_A H6, RHO-related GTP-bin 99.7 5.6E-16 1.9E-20 150.0 12.8 114 90-222 25-144 (207)
151 3l0i_B RAS-related protein RAB 99.7 1.2E-17 4.2E-22 160.6 1.0 116 88-221 31-152 (199)
152 2q3h_A RAS homolog gene family 99.6 5.5E-16 1.9E-20 148.9 12.4 117 87-222 17-139 (201)
153 2gco_A H9, RHO-related GTP-bin 99.6 7.3E-16 2.5E-20 148.5 13.0 115 89-222 24-144 (201)
154 2yc2_C IFT27, small RAB-relate 99.6 1.5E-16 5.1E-21 153.2 7.7 117 89-221 19-146 (208)
155 3c5c_A RAS-like protein 12; GD 99.6 1.5E-15 5E-20 144.7 13.6 115 89-221 20-141 (187)
156 1lnz_A SPO0B-associated GTP-bi 99.6 1.9E-16 6.7E-21 165.1 8.1 117 87-221 155-288 (342)
157 2cxx_A Probable GTP-binding pr 99.6 1.2E-15 4.2E-20 144.6 12.7 111 91-223 2-138 (190)
158 3lxx_A GTPase IMAP family memb 99.6 8.3E-17 2.8E-21 159.7 4.7 144 85-245 24-191 (239)
159 2iwr_A Centaurin gamma 1; ANK 99.6 6.9E-15 2.3E-19 138.1 16.3 106 90-220 7-121 (178)
160 3geh_A MNME, tRNA modification 99.6 4.6E-16 1.6E-20 168.6 9.2 113 91-222 225-345 (462)
161 1m7b_A RND3/RHOE small GTP-bin 99.6 1E-15 3.5E-20 145.1 10.0 116 89-221 6-125 (184)
162 2qtf_A Protein HFLX, GTP-bindi 99.6 5.5E-15 1.9E-19 155.7 15.4 117 88-222 177-307 (364)
163 1jwy_B Dynamin A GTPase domain 99.6 1.8E-15 6.2E-20 156.2 11.5 70 153-222 129-213 (315)
164 3r7w_A Gtpase1, GTP-binding pr 99.6 9.3E-15 3.2E-19 150.7 16.4 114 91-221 4-129 (307)
165 2aka_B Dynamin-1; fusion prote 99.6 3E-15 1E-19 153.2 11.9 136 87-222 23-207 (299)
166 1gwn_A RHO-related GTP-binding 99.6 2.2E-15 7.6E-20 145.9 9.9 117 88-221 26-146 (205)
167 3th5_A RAS-related C3 botulinu 99.4 1.3E-16 4.3E-21 154.0 0.0 118 88-222 28-149 (204)
168 2wkq_A NPH1-1, RAS-related C3 99.6 9.4E-15 3.2E-19 151.5 13.2 116 88-222 153-274 (332)
169 2e87_A Hypothetical protein PH 99.6 5E-14 1.7E-18 148.3 18.6 116 88-221 165-294 (357)
170 1nrj_B SR-beta, signal recogni 99.6 3.5E-14 1.2E-18 138.1 14.9 114 88-223 10-136 (218)
171 2zej_A Dardarin, leucine-rich 99.5 9.1E-15 3.1E-19 138.7 8.6 115 91-221 3-126 (184)
172 2g3y_A GTP-binding protein GEM 99.5 4.2E-14 1.4E-18 137.7 13.2 116 89-221 36-159 (211)
173 3dpu_A RAB family protein; roc 99.5 3.1E-14 1.1E-18 158.0 11.0 117 87-221 38-164 (535)
174 2cjw_A GTP-binding protein GEM 99.5 2.1E-13 7.1E-18 130.5 14.2 114 90-220 6-127 (192)
175 3p32_A Probable GTPase RV1496/ 99.5 6.1E-14 2.1E-18 147.5 10.3 127 88-221 77-231 (355)
176 1pui_A ENGB, probable GTP-bind 99.5 2.9E-13 9.8E-18 130.7 13.9 118 85-221 21-151 (210)
177 3def_A T7I23.11 protein; chlor 99.5 1.8E-13 6E-18 137.8 12.2 116 89-221 35-165 (262)
178 2j69_A Bacterial dynamin-like 99.5 3.6E-13 1.2E-17 153.3 16.0 67 155-221 174-244 (695)
179 2f9l_A RAB11B, member RAS onco 99.5 6.2E-13 2.1E-17 127.6 14.3 114 90-221 5-124 (199)
180 2wsm_A Hydrogenase expression/ 99.5 7.9E-14 2.7E-18 136.0 7.9 124 88-220 28-167 (221)
181 1h65_A Chloroplast outer envel 99.4 6.9E-13 2.4E-17 134.0 14.8 117 89-222 38-169 (270)
182 2ged_A SR-beta, signal recogni 99.4 2.1E-13 7.1E-18 129.8 9.7 126 88-235 46-185 (193)
183 2x2e_A Dynamin-1; nitration, h 99.4 1.3E-13 4.6E-18 144.8 8.2 135 88-222 29-212 (353)
184 1udx_A The GTP-binding protein 99.4 5.1E-13 1.8E-17 142.5 12.3 117 87-221 154-283 (416)
185 2qpt_A EH domain-containing pr 99.4 6.4E-13 2.2E-17 147.2 11.7 144 88-232 63-244 (550)
186 4a9a_A Ribosome-interacting GT 99.4 5.3E-12 1.8E-16 132.6 17.9 115 88-221 70-196 (376)
187 3r7w_B Gtpase2, GTP-binding pr 99.4 3.7E-12 1.3E-16 130.8 15.9 112 92-222 1-121 (331)
188 3zvr_A Dynamin-1; hydrolase, D 99.4 7.1E-13 2.4E-17 150.1 11.3 135 88-222 49-232 (772)
189 2qag_A Septin-2, protein NEDD5 99.4 1.1E-12 3.7E-17 138.1 11.8 122 90-221 37-188 (361)
190 1wxq_A GTP-binding protein; st 99.4 1.3E-13 4.5E-18 146.7 4.5 82 92-191 2-114 (397)
191 1oix_A RAS-related protein RAB 99.4 4.3E-12 1.5E-16 121.1 14.5 116 88-221 27-148 (191)
192 2www_A Methylmalonic aciduria 99.4 4.3E-12 1.5E-16 132.9 15.2 63 152-221 164-226 (349)
193 3c5h_A Glucocorticoid receptor 99.4 7.9E-13 2.7E-17 132.5 9.1 44 178-221 162-212 (255)
194 1yrb_A ATP(GTP)binding protein 99.3 6.9E-12 2.4E-16 125.6 9.3 134 88-222 12-186 (262)
195 2j37_W Signal recognition part 99.3 1.2E-12 4E-17 142.7 3.1 217 88-333 99-344 (504)
196 3t34_A Dynamin-related protein 99.3 2.3E-11 7.8E-16 128.1 12.3 69 154-222 135-218 (360)
197 1jal_A YCHF protein; nucleotid 99.1 3.6E-10 1.2E-14 118.1 12.2 82 91-190 3-108 (363)
198 2xxa_A Signal recognition part 99.1 1.3E-09 4.4E-14 117.0 16.6 219 88-336 98-349 (433)
199 2qm8_A GTPase/ATPase; G protei 99.1 3.7E-10 1.3E-14 117.6 10.1 125 87-221 52-207 (337)
200 2hf9_A Probable hydrogenase ni 99.0 5.7E-10 2E-14 108.8 10.2 125 88-220 36-177 (226)
201 2dby_A GTP-binding protein; GD 99.0 1E-08 3.6E-13 107.5 19.5 82 91-190 2-111 (368)
202 2qnr_A Septin-2, protein NEDD5 99.0 1.8E-09 6.1E-14 110.7 11.6 120 91-221 19-169 (301)
203 2qag_C Septin-7; cell cycle, c 99.0 4E-09 1.4E-13 112.5 13.6 117 91-221 32-181 (418)
204 3kl4_A SRP54, signal recogniti 98.9 9.4E-09 3.2E-13 109.8 15.8 217 89-334 96-346 (433)
205 3ec1_A YQEH GTPase; atnos1, at 98.8 6.5E-10 2.2E-14 117.2 -0.4 132 91-237 163-305 (369)
206 4fid_A G protein alpha subunit 98.8 9.7E-09 3.3E-13 106.3 8.3 83 139-221 145-242 (340)
207 3h2y_A GTPase family protein; 98.8 1.2E-09 4.2E-14 115.0 1.6 133 91-238 161-305 (368)
208 2qag_B Septin-6, protein NEDD5 98.8 2.9E-08 1E-12 105.5 12.1 136 86-236 38-206 (427)
209 2v3c_C SRP54, signal recogniti 98.7 1.5E-08 5.1E-13 108.7 7.9 222 89-341 98-353 (432)
210 3ohm_A Guanine nucleotide-bind 98.7 2E-08 6.8E-13 103.5 6.8 82 139-220 151-247 (327)
211 1tq4_A IIGP1, interferon-induc 98.7 2.8E-07 9.6E-12 98.0 15.5 112 91-220 70-188 (413)
212 2ohf_A Protein OLA1, GTP-bindi 98.6 3.8E-08 1.3E-12 103.7 8.3 84 89-190 21-128 (396)
213 3dm5_A SRP54, signal recogniti 98.6 2.6E-06 8.9E-11 91.0 21.9 146 89-238 99-268 (443)
214 3sop_A Neuronal-specific septi 98.6 2.1E-07 7.2E-12 93.6 12.7 136 91-235 3-169 (270)
215 1cip_A Protein (guanine nucleo 98.6 5.1E-08 1.7E-12 101.8 7.1 82 139-220 177-273 (353)
216 3e1y_E Eukaryotic peptide chai 98.6 1.5E-07 5E-12 90.6 9.2 85 386-476 3-91 (204)
217 1zcb_A G alpha I/13; GTP-bindi 98.4 2.3E-07 8E-12 97.1 7.6 80 141-220 187-281 (362)
218 1ni3_A YCHF GTPase, YCHF GTP-b 98.3 7.7E-07 2.6E-11 93.9 8.8 85 89-190 19-127 (392)
219 4dzz_A Plasmid partitioning pr 98.3 4.8E-06 1.6E-10 79.4 12.4 143 91-238 2-160 (206)
220 1u0l_A Probable GTPase ENGC; p 98.3 6E-07 2E-11 91.8 5.9 64 156-221 64-129 (301)
221 1j8m_F SRP54, signal recogniti 98.3 3.4E-06 1.1E-10 86.0 11.2 145 90-239 98-269 (297)
222 1azs_C GS-alpha; complex (lyas 98.2 1.6E-06 5.5E-11 91.7 7.6 79 142-220 204-297 (402)
223 1f5n_A Interferon-induced guan 98.2 1.4E-06 4.8E-11 96.4 6.5 103 87-204 35-146 (592)
224 3l82_B F-box only protein 4; T 98.1 8E-06 2.7E-10 77.8 9.8 67 156-222 97-178 (227)
225 2xtz_A Guanine nucleotide-bind 98.0 4.3E-06 1.5E-10 87.2 6.7 67 154-220 182-263 (354)
226 1puj_A YLQF, conserved hypothe 98.0 4.9E-06 1.7E-10 84.1 6.9 61 159-221 3-64 (282)
227 3cwq_A Para family chromosome 98.0 4.8E-05 1.7E-09 73.1 12.1 143 92-238 2-151 (209)
228 3ec1_A YQEH GTPase; atnos1, at 97.9 1.4E-05 5E-10 83.8 8.5 64 156-222 50-113 (369)
229 3l2o_B F-box only protein 4; s 97.9 6.5E-05 2.2E-09 75.0 11.4 60 163-222 195-263 (312)
230 2ph1_A Nucleotide-binding prot 97.9 0.00018 6E-09 71.6 14.2 87 153-239 127-222 (262)
231 3szr_A Interferon-induced GTP- 97.8 5.1E-05 1.8E-09 84.9 11.2 69 154-222 146-229 (608)
232 1puj_A YLQF, conserved hypothe 97.8 1.6E-05 5.4E-10 80.3 6.3 59 89-167 119-177 (282)
233 1zu4_A FTSY; GTPase, signal re 97.8 0.00013 4.4E-09 74.9 12.8 80 153-239 190-284 (320)
234 2yv5_A YJEQ protein; hydrolase 97.8 1.3E-05 4.4E-10 81.9 4.8 56 166-221 67-124 (302)
235 3h2y_A GTPase family protein; 97.8 2.6E-05 9E-10 81.8 6.6 56 165-222 56-111 (368)
236 2yhs_A FTSY, cell division pro 97.7 0.00015 5.2E-09 78.1 12.0 144 88-238 291-467 (503)
237 3e70_C DPA, signal recognition 97.7 7.1E-05 2.4E-09 77.1 8.3 141 89-238 128-297 (328)
238 1wcv_1 SOJ, segregation protei 97.7 9.8E-05 3.4E-09 73.2 8.8 84 153-238 110-200 (257)
239 3end_A Light-independent proto 97.7 0.00021 7.2E-09 72.7 11.3 82 153-240 155-241 (307)
240 2oze_A ORF delta'; para, walke 97.6 0.00025 8.7E-09 71.7 11.4 83 153-237 153-242 (298)
241 3cnl_A YLQF, putative uncharac 97.6 2.9E-05 9.8E-10 77.6 3.4 55 163-221 5-60 (262)
242 3kjh_A CO dehydrogenase/acetyl 97.6 3.8E-05 1.3E-09 75.3 4.1 86 153-245 130-216 (254)
243 1vma_A Cell division protein F 97.6 0.0003 1E-08 71.7 10.8 146 89-239 103-279 (306)
244 2ffh_A Protein (FFH); SRP54, s 97.6 0.00025 8.7E-09 75.4 10.7 146 89-239 97-267 (425)
245 3cnl_A YLQF, putative uncharac 97.6 3.8E-05 1.3E-09 76.7 3.8 58 91-168 100-157 (262)
246 1rj9_A FTSY, signal recognitio 97.5 0.00061 2.1E-08 69.4 11.7 144 89-239 101-277 (304)
247 1hyq_A MIND, cell division inh 97.5 0.00056 1.9E-08 67.7 11.2 82 153-238 109-191 (263)
248 1g3q_A MIND ATPase, cell divis 97.4 0.00078 2.7E-08 65.4 10.7 82 153-238 110-192 (237)
249 2px0_A Flagellar biosynthesis 97.3 0.00031 1.1E-08 71.3 6.9 145 89-237 104-267 (296)
250 2xj4_A MIPZ; replication, cell 97.3 0.00019 6.6E-09 72.4 5.3 82 154-237 103-212 (286)
251 3q5d_A Atlastin-1; G protein, 97.3 0.00076 2.6E-08 72.1 10.1 27 87-113 64-90 (447)
252 1ls1_A Signal recognition part 97.2 0.00077 2.6E-08 68.3 9.2 146 89-239 97-267 (295)
253 3k9g_A PF-32 protein; ssgcid, 97.2 0.0012 4.1E-08 65.5 10.5 78 153-233 143-222 (267)
254 1xe1_A Hypothetical protein PF 97.2 0.0021 7.1E-08 54.8 9.8 78 387-472 32-113 (116)
255 3ea0_A ATPase, para family; al 97.1 0.0037 1.3E-07 60.8 12.6 80 154-238 118-200 (245)
256 3q9l_A Septum site-determining 97.1 0.00063 2.2E-08 67.0 6.6 83 154-238 113-206 (260)
257 3bfv_A CAPA1, CAPB2, membrane 97.1 0.0022 7.6E-08 64.0 10.5 66 154-220 191-257 (271)
258 3cio_A ETK, tyrosine-protein k 97.0 0.002 7E-08 65.3 9.8 66 154-220 213-279 (299)
259 1nij_A Hypothetical protein YJ 96.9 0.0028 9.5E-08 64.9 9.5 142 89-233 3-175 (318)
260 3b9q_A Chloroplast SRP recepto 96.9 0.0065 2.2E-07 61.7 12.0 142 89-237 99-274 (302)
261 1cp2_A CP2, nitrogenase iron p 96.8 0.0073 2.5E-07 59.7 11.8 85 153-239 114-204 (269)
262 3la6_A Tyrosine-protein kinase 96.8 0.0045 1.5E-07 62.3 9.7 67 154-221 201-268 (286)
263 2afh_E Nitrogenase iron protei 96.7 0.012 4.2E-07 58.9 12.4 90 153-245 117-212 (289)
264 1d1n_A Initiation factor 2; be 96.7 0.0035 1.2E-07 51.9 6.5 76 392-471 9-89 (99)
265 2og2_A Putative signal recogni 96.6 0.0055 1.9E-07 63.7 9.1 142 89-237 156-331 (359)
266 3ug7_A Arsenical pump-driving 96.3 0.065 2.2E-06 55.4 15.3 68 179-247 237-315 (349)
267 1t9h_A YLOQ, probable GTPase E 96.2 0.0027 9.2E-08 64.6 4.2 48 175-222 83-132 (307)
268 2crv_A IF-2MT, translation ini 96.2 0.013 4.3E-07 50.3 7.4 74 394-471 15-97 (120)
269 3of5_A Dethiobiotin synthetase 96.0 0.04 1.4E-06 53.3 11.4 87 153-239 109-201 (228)
270 1t9h_A YLOQ, probable GTPase E 96.0 0.002 6.8E-08 65.5 1.8 22 90-111 173-194 (307)
271 3ez2_A Plasmid partition prote 95.9 0.019 6.5E-07 60.4 8.8 90 153-245 243-344 (398)
272 3zq6_A Putative arsenical pump 95.8 0.088 3E-06 53.7 13.1 67 180-247 223-300 (324)
273 1np6_A Molybdopterin-guanine d 95.7 0.046 1.6E-06 50.6 9.9 25 89-113 5-29 (174)
274 2yv5_A YJEQ protein; hydrolase 95.5 0.014 4.8E-07 59.2 5.8 21 91-111 166-186 (302)
275 2rcn_A Probable GTPase ENGC; Y 95.4 0.0069 2.4E-07 62.8 3.2 21 91-111 216-236 (358)
276 2rcn_A Probable GTPase ENGC; Y 95.4 0.037 1.3E-06 57.3 8.5 46 176-222 128-175 (358)
277 4ido_A Atlastin-1; GTPase, GTP 95.4 0.039 1.3E-06 58.8 8.8 114 87-203 64-193 (457)
278 1byi_A Dethiobiotin synthase; 95.3 0.11 3.9E-06 49.3 11.2 95 153-248 107-207 (224)
279 1bif_A 6-phosphofructo-2-kinas 95.0 0.022 7.7E-07 61.4 5.7 106 91-213 40-155 (469)
280 2woo_A ATPase GET3; tail-ancho 94.9 0.22 7.7E-06 50.8 12.9 66 180-246 222-299 (329)
281 3iqw_A Tail-anchored protein t 94.7 0.31 1E-05 49.9 13.2 68 180-247 223-303 (334)
282 3zvl_A Bifunctional polynucleo 94.7 0.066 2.2E-06 56.8 8.4 24 89-112 257-280 (416)
283 1kgd_A CASK, peripheral plasma 94.7 0.018 6.1E-07 53.4 3.5 23 91-113 6-28 (180)
284 1lvg_A Guanylate kinase, GMP k 94.6 0.016 5.3E-07 54.8 3.0 22 91-112 5-26 (198)
285 3ney_A 55 kDa erythrocyte memb 94.6 0.02 6.9E-07 54.1 3.7 28 86-113 15-42 (197)
286 2yvu_A Probable adenylyl-sulfa 94.6 0.28 9.5E-06 45.2 11.6 24 89-112 12-35 (186)
287 1zo1_I IF2, translation initia 94.4 0.091 3.1E-06 56.9 8.8 79 393-472 412-492 (501)
288 1ye8_A Protein THEP1, hypothet 94.4 0.021 7.3E-07 53.0 3.3 23 92-114 2-24 (178)
289 3a00_A Guanylate kinase, GMP k 94.3 0.02 6.8E-07 53.3 2.9 22 91-112 2-23 (186)
290 3fgn_A Dethiobiotin synthetase 94.0 0.69 2.4E-05 45.2 13.5 82 153-234 125-214 (251)
291 3izy_P Translation initiation 94.0 0.2 6.8E-06 54.7 10.5 79 391-470 449-533 (537)
292 1ihu_A Arsenical pump-driving 94.0 0.19 6.5E-06 55.7 10.5 40 181-220 200-240 (589)
293 3c8u_A Fructokinase; YP_612366 93.9 0.034 1.2E-06 52.7 3.7 24 88-111 20-43 (208)
294 3tr0_A Guanylate kinase, GMP k 93.8 0.034 1.2E-06 52.2 3.6 23 91-113 8-30 (205)
295 1xjc_A MOBB protein homolog; s 93.8 0.033 1.1E-06 51.3 3.3 24 89-112 3-26 (169)
296 1znw_A Guanylate kinase, GMP k 93.8 0.033 1.1E-06 52.8 3.4 24 89-112 19-42 (207)
297 1zp6_A Hypothetical protein AT 93.7 0.04 1.4E-06 51.1 3.7 22 90-111 9-30 (191)
298 3io3_A DEHA2D07832P; chaperone 93.7 0.89 3.1E-05 46.7 14.2 67 180-247 232-312 (348)
299 3kb2_A SPBC2 prophage-derived 93.6 0.042 1.5E-06 49.8 3.6 25 91-115 2-26 (173)
300 3tau_A Guanylate kinase, GMP k 93.6 0.042 1.4E-06 52.1 3.7 24 90-113 8-31 (208)
301 1z6g_A Guanylate kinase; struc 93.5 0.037 1.3E-06 53.1 3.1 23 90-112 23-45 (218)
302 4gp7_A Metallophosphoesterase; 93.4 0.036 1.2E-06 50.9 2.9 22 90-111 9-30 (171)
303 2f1r_A Molybdopterin-guanine d 93.4 0.023 8E-07 52.4 1.5 22 90-111 2-23 (171)
304 1knq_A Gluconate kinase; ALFA/ 93.4 0.064 2.2E-06 49.0 4.5 26 90-115 8-33 (175)
305 1kag_A SKI, shikimate kinase I 93.4 0.046 1.6E-06 49.8 3.5 25 91-115 5-29 (173)
306 1s96_A Guanylate kinase, GMP k 93.3 0.045 1.5E-06 52.6 3.4 25 89-113 15-39 (219)
307 3ez9_A Para; DNA binding, wing 93.2 0.14 4.7E-06 53.9 7.3 91 153-246 246-348 (403)
308 3lw7_A Adenylate kinase relate 93.2 0.045 1.5E-06 49.5 3.1 24 91-115 2-25 (179)
309 1htw_A HI0065; nucleotide-bind 93.1 0.049 1.7E-06 49.5 3.2 25 88-112 31-55 (158)
310 3asz_A Uridine kinase; cytidin 93.1 0.048 1.7E-06 51.5 3.3 22 90-111 6-27 (211)
311 4eun_A Thermoresistant glucoki 93.0 0.062 2.1E-06 50.5 3.9 26 90-115 29-54 (200)
312 2cvh_A DNA repair and recombin 93.0 0.34 1.2E-05 45.6 9.2 23 90-112 20-42 (220)
313 2j41_A Guanylate kinase; GMP, 92.9 0.059 2E-06 50.5 3.5 22 91-112 7-28 (207)
314 1ex7_A Guanylate kinase; subst 92.8 0.052 1.8E-06 50.8 3.0 23 91-113 2-24 (186)
315 3vaa_A Shikimate kinase, SK; s 92.8 0.068 2.3E-06 50.2 3.8 27 89-115 24-50 (199)
316 3tif_A Uncharacterized ABC tra 92.8 0.052 1.8E-06 52.8 3.0 22 90-111 31-52 (235)
317 2qor_A Guanylate kinase; phosp 92.8 0.056 1.9E-06 51.0 3.2 26 89-114 11-36 (204)
318 2vhj_A Ntpase P4, P4; non- hyd 92.7 0.13 4.3E-06 52.4 5.8 23 91-113 124-146 (331)
319 1ukz_A Uridylate kinase; trans 92.7 0.091 3.1E-06 49.2 4.5 29 87-115 12-40 (203)
320 3fkq_A NTRC-like two-domain pr 92.7 0.71 2.4E-05 47.8 11.8 36 153-190 258-293 (373)
321 2bdt_A BH3686; alpha-beta prot 92.7 0.06 2.1E-06 49.9 3.2 21 91-111 3-23 (189)
322 4fcw_A Chaperone protein CLPB; 92.6 0.68 2.3E-05 46.2 11.3 24 90-113 47-70 (311)
323 2p5t_B PEZT; postsegregational 92.6 0.33 1.1E-05 47.3 8.7 27 88-114 30-56 (253)
324 3t61_A Gluconokinase; PSI-biol 92.6 0.078 2.7E-06 49.7 4.0 26 90-115 18-43 (202)
325 2pcj_A ABC transporter, lipopr 92.6 0.057 1.9E-06 52.1 3.0 21 91-111 31-51 (224)
326 2ghi_A Transport protein; mult 92.6 0.075 2.6E-06 52.5 3.9 22 90-111 46-67 (260)
327 3trf_A Shikimate kinase, SK; a 92.4 0.081 2.8E-06 48.7 3.7 26 90-115 5-30 (185)
328 2onk_A Molybdate/tungstate ABC 92.3 0.07 2.4E-06 52.1 3.2 21 91-111 25-45 (240)
329 2bbw_A Adenylate kinase 4, AK4 92.3 0.081 2.8E-06 51.4 3.7 26 91-116 28-53 (246)
330 3b85_A Phosphate starvation-in 92.2 0.066 2.3E-06 51.0 2.9 21 91-111 23-43 (208)
331 2eyu_A Twitching motility prot 92.2 0.072 2.5E-06 52.7 3.2 22 90-111 25-46 (261)
332 1ly1_A Polynucleotide kinase; 92.2 0.077 2.6E-06 48.4 3.2 22 91-112 3-24 (181)
333 3qxc_A Dethiobiotin synthetase 92.2 1 3.4E-05 43.8 11.4 83 153-235 130-217 (242)
334 1cke_A CK, MSSA, protein (cyti 92.2 0.085 2.9E-06 50.3 3.7 25 91-115 6-30 (227)
335 2if2_A Dephospho-COA kinase; a 92.1 0.074 2.5E-06 49.9 3.1 22 91-112 2-23 (204)
336 3uie_A Adenylyl-sulfate kinase 92.0 0.087 3E-06 49.5 3.5 23 90-112 25-47 (200)
337 1nks_A Adenylate kinase; therm 92.0 0.082 2.8E-06 48.8 3.2 23 91-113 2-24 (194)
338 1b0u_A Histidine permease; ABC 92.0 0.074 2.5E-06 52.6 3.1 22 90-111 32-53 (262)
339 3aez_A Pantothenate kinase; tr 92.0 0.095 3.2E-06 53.2 3.9 25 87-111 87-111 (312)
340 2cbz_A Multidrug resistance-as 92.0 0.074 2.5E-06 51.7 3.0 22 90-111 31-52 (237)
341 3bos_A Putative DNA replicatio 92.0 0.14 4.8E-06 48.8 5.0 25 89-113 51-75 (242)
342 1mv5_A LMRA, multidrug resista 92.0 0.076 2.6E-06 51.8 3.1 22 90-111 28-49 (243)
343 2qt1_A Nicotinamide riboside k 92.0 0.096 3.3E-06 49.3 3.7 24 88-111 19-42 (207)
344 1y63_A LMAJ004144AAA protein; 92.0 0.095 3.3E-06 48.5 3.6 25 89-113 9-33 (184)
345 2pze_A Cystic fibrosis transme 92.0 0.077 2.6E-06 51.3 3.1 22 90-111 34-55 (229)
346 1g6h_A High-affinity branched- 92.0 0.075 2.6E-06 52.4 3.0 22 90-111 33-54 (257)
347 4g1u_C Hemin import ATP-bindin 91.9 0.077 2.6E-06 52.6 3.1 22 90-111 37-58 (266)
348 1jjv_A Dephospho-COA kinase; P 91.9 0.082 2.8E-06 49.7 3.2 21 91-111 3-23 (206)
349 2d2e_A SUFC protein; ABC-ATPas 91.9 0.081 2.8E-06 51.9 3.2 22 90-111 29-50 (250)
350 3gfo_A Cobalt import ATP-bindi 91.9 0.077 2.6E-06 52.9 3.1 21 91-111 35-55 (275)
351 2i3b_A HCR-ntpase, human cance 91.9 0.081 2.8E-06 49.6 3.0 21 92-112 3-23 (189)
352 3lnc_A Guanylate kinase, GMP k 91.9 0.057 2E-06 52.0 2.0 23 89-111 26-48 (231)
353 2ff7_A Alpha-hemolysin translo 91.8 0.079 2.7E-06 51.9 3.0 21 91-111 36-56 (247)
354 1qhx_A CPT, protein (chloramph 91.8 0.1 3.6E-06 47.6 3.6 25 91-115 4-28 (178)
355 2v9p_A Replication protein E1; 91.8 0.097 3.3E-06 52.9 3.6 25 88-112 124-148 (305)
356 3iij_A Coilin-interacting nucl 91.7 0.12 4E-06 47.5 3.9 27 89-115 10-36 (180)
357 1sgw_A Putative ABC transporte 91.7 0.08 2.7E-06 50.7 2.9 21 91-111 36-56 (214)
358 1uf9_A TT1252 protein; P-loop, 91.7 0.098 3.4E-06 48.8 3.5 25 89-113 7-31 (203)
359 2jaq_A Deoxyguanosine kinase; 91.7 0.11 3.6E-06 48.5 3.7 24 92-115 2-25 (205)
360 1ji0_A ABC transporter; ATP bi 91.7 0.083 2.8E-06 51.5 3.0 22 90-111 32-53 (240)
361 1via_A Shikimate kinase; struc 91.7 0.1 3.4E-06 47.7 3.4 25 91-115 5-29 (175)
362 2olj_A Amino acid ABC transpor 91.7 0.085 2.9E-06 52.2 3.1 23 89-111 49-71 (263)
363 2ehv_A Hypothetical protein PH 91.6 0.093 3.2E-06 50.7 3.2 22 90-111 30-51 (251)
364 1u0l_A Probable GTPase ENGC; p 91.6 0.085 2.9E-06 53.3 3.0 21 91-111 170-190 (301)
365 3fwy_A Light-independent proto 91.6 0.46 1.6E-05 48.2 8.5 87 153-246 162-253 (314)
366 2zu0_C Probable ATP-dependent 91.5 0.095 3.2E-06 52.0 3.2 22 90-111 46-67 (267)
367 2rhm_A Putative kinase; P-loop 91.5 0.13 4.4E-06 47.5 4.0 26 90-115 5-30 (193)
368 1vpl_A ABC transporter, ATP-bi 91.5 0.093 3.2E-06 51.7 3.1 22 90-111 41-62 (256)
369 1hqc_A RUVB; extended AAA-ATPa 91.4 0.85 2.9E-05 45.7 10.4 23 91-113 39-61 (324)
370 2qi9_C Vitamin B12 import ATP- 91.4 0.095 3.3E-06 51.4 3.1 21 91-111 27-47 (249)
371 3fvq_A Fe(3+) IONS import ATP- 91.4 0.16 5.5E-06 52.5 4.9 22 90-111 30-51 (359)
372 3ec2_A DNA replication protein 91.4 0.089 3.1E-06 48.3 2.7 24 88-111 36-59 (180)
373 3pfi_A Holliday junction ATP-d 91.4 0.71 2.4E-05 46.8 9.8 24 90-113 55-78 (338)
374 2wwf_A Thymidilate kinase, put 91.4 0.12 4.1E-06 48.6 3.6 23 90-112 10-32 (212)
375 3gd7_A Fusion complex of cysti 91.3 0.18 6.2E-06 52.8 5.3 31 90-123 47-77 (390)
376 1rz3_A Hypothetical protein rb 91.3 0.13 4.4E-06 48.4 3.8 26 87-112 19-44 (201)
377 2c95_A Adenylate kinase 1; tra 91.3 0.14 4.6E-06 47.5 3.9 26 90-115 9-34 (196)
378 2ixe_A Antigen peptide transpo 91.3 0.097 3.3E-06 52.0 3.0 22 90-111 45-66 (271)
379 2jeo_A Uridine-cytidine kinase 91.3 0.14 4.7E-06 49.9 4.0 27 89-115 24-50 (245)
380 3cm0_A Adenylate kinase; ATP-b 91.2 0.14 4.7E-06 47.1 3.9 25 91-115 5-29 (186)
381 2ihy_A ABC transporter, ATP-bi 91.2 0.1 3.4E-06 52.2 3.1 22 90-111 47-68 (279)
382 3n70_A Transport activator; si 91.2 0.47 1.6E-05 41.9 7.2 21 91-111 25-45 (145)
383 1g29_1 MALK, maltose transport 91.2 0.19 6.4E-06 52.3 5.2 22 90-111 29-50 (372)
384 2yz2_A Putative ABC transporte 91.2 0.1 3.5E-06 51.7 3.0 22 90-111 33-54 (266)
385 4a74_A DNA repair and recombin 91.2 0.11 3.7E-06 49.5 3.1 22 90-111 25-46 (231)
386 3fb4_A Adenylate kinase; psych 91.1 0.13 4.4E-06 48.7 3.6 24 92-115 2-25 (216)
387 1qf9_A UMP/CMP kinase, protein 91.1 0.17 5.7E-06 46.6 4.3 26 90-115 6-31 (194)
388 4e22_A Cytidylate kinase; P-lo 91.1 0.14 4.9E-06 50.0 4.0 26 90-115 27-52 (252)
389 1sxj_A Activator 1 95 kDa subu 91.1 0.82 2.8E-05 49.6 10.5 26 90-115 77-102 (516)
390 2nq2_C Hypothetical ABC transp 91.1 0.11 3.6E-06 51.2 3.0 21 91-111 32-52 (253)
391 1kht_A Adenylate kinase; phosp 91.0 0.11 3.9E-06 47.7 3.1 23 91-113 4-26 (192)
392 1odf_A YGR205W, hypothetical 3 91.0 0.13 4.6E-06 51.5 3.8 24 88-111 29-52 (290)
393 3umf_A Adenylate kinase; rossm 91.0 0.19 6.3E-06 48.2 4.6 31 86-116 25-55 (217)
394 2gza_A Type IV secretion syste 91.0 0.099 3.4E-06 54.3 2.8 21 91-111 176-196 (361)
395 3tqc_A Pantothenate kinase; bi 91.0 0.2 6.9E-06 51.0 5.1 26 87-112 89-114 (321)
396 1tev_A UMP-CMP kinase; ploop, 90.9 0.15 5.2E-06 47.0 3.8 25 91-115 4-28 (196)
397 3dl0_A Adenylate kinase; phosp 90.8 0.14 4.7E-06 48.5 3.5 24 92-115 2-25 (216)
398 2vp4_A Deoxynucleoside kinase; 90.8 0.11 3.9E-06 50.0 2.9 25 87-111 17-41 (230)
399 2kjq_A DNAA-related protein; s 90.8 0.11 3.8E-06 46.5 2.6 24 89-112 35-58 (149)
400 1sq5_A Pantothenate kinase; P- 90.7 0.15 5E-06 51.7 3.7 24 88-111 78-101 (308)
401 2iyv_A Shikimate kinase, SK; t 90.7 0.14 4.7E-06 47.1 3.3 25 91-115 3-27 (184)
402 2chg_A Replication factor C sm 90.7 0.39 1.3E-05 44.7 6.6 23 90-112 38-60 (226)
403 1aky_A Adenylate kinase; ATP:A 90.6 0.17 5.6E-06 48.2 3.9 26 90-115 4-29 (220)
404 3nh6_A ATP-binding cassette SU 90.6 0.092 3.1E-06 53.2 2.1 23 89-111 79-101 (306)
405 1zd8_A GTP:AMP phosphotransfer 90.5 0.16 5.3E-06 48.7 3.6 26 90-115 7-32 (227)
406 2ze6_A Isopentenyl transferase 90.5 0.17 5.7E-06 49.6 3.9 25 91-115 2-26 (253)
407 2v1u_A Cell division control p 90.5 0.61 2.1E-05 47.8 8.4 25 88-112 42-66 (387)
408 3kta_A Chromosome segregation 90.4 0.16 5.4E-06 46.6 3.4 24 92-115 28-51 (182)
409 2plr_A DTMP kinase, probable t 90.4 0.18 6.3E-06 47.2 4.0 25 91-115 5-29 (213)
410 2bwj_A Adenylate kinase 5; pho 90.4 0.16 5.6E-06 47.0 3.6 25 91-115 13-37 (199)
411 2cdn_A Adenylate kinase; phosp 90.4 0.2 6.9E-06 46.8 4.2 26 90-115 20-45 (201)
412 2v54_A DTMP kinase, thymidylat 90.4 0.15 5.2E-06 47.5 3.4 22 91-112 5-26 (204)
413 3jvv_A Twitching mobility prot 90.4 0.13 4.6E-06 53.1 3.2 21 91-111 124-144 (356)
414 2pjz_A Hypothetical protein ST 90.4 0.14 4.6E-06 50.7 3.1 21 91-111 31-51 (263)
415 3tui_C Methionine import ATP-b 90.3 0.14 4.8E-06 53.1 3.2 23 89-111 53-75 (366)
416 1zak_A Adenylate kinase; ATP:A 90.3 0.17 5.8E-06 48.2 3.6 26 90-115 5-30 (222)
417 1zuh_A Shikimate kinase; alpha 90.2 0.18 6.3E-06 45.5 3.6 26 90-115 7-32 (168)
418 1e6c_A Shikimate kinase; phosp 90.2 0.17 5.8E-06 45.8 3.4 25 91-115 3-27 (173)
419 1uj2_A Uridine-cytidine kinase 90.1 0.19 6.6E-06 49.0 4.0 27 89-115 21-47 (252)
420 1oxx_K GLCV, glucose, ABC tran 90.1 0.16 5.6E-06 52.4 3.6 22 90-111 31-52 (353)
421 2pt7_A CAG-ALFA; ATPase, prote 90.1 0.11 3.9E-06 53.1 2.3 21 91-111 172-192 (330)
422 2vli_A Antibiotic resistance p 90.1 0.15 5.1E-06 46.7 2.9 25 91-115 6-30 (183)
423 2bbs_A Cystic fibrosis transme 90.0 0.14 4.9E-06 51.3 3.0 23 89-111 63-85 (290)
424 2b8t_A Thymidine kinase; deoxy 90.0 0.22 7.5E-06 47.9 4.1 43 180-222 89-131 (223)
425 1gtv_A TMK, thymidylate kinase 89.9 0.08 2.7E-06 49.9 0.9 22 92-113 2-23 (214)
426 2ewv_A Twitching motility prot 89.9 0.15 5.2E-06 53.1 3.1 23 89-111 135-157 (372)
427 2pt5_A Shikimate kinase, SK; a 89.9 0.2 6.9E-06 45.1 3.6 24 92-115 2-25 (168)
428 1nn5_A Similar to deoxythymidy 89.9 0.17 5.9E-06 47.5 3.3 23 90-112 9-31 (215)
429 3lda_A DNA repair protein RAD5 89.9 1.9 6.6E-05 45.1 11.6 22 90-111 178-199 (400)
430 4a1f_A DNAB helicase, replicat 89.9 0.62 2.1E-05 47.7 7.6 23 91-113 47-69 (338)
431 1d2n_A N-ethylmaleimide-sensit 89.8 0.89 3.1E-05 44.5 8.6 26 88-113 62-87 (272)
432 1vht_A Dephospho-COA kinase; s 89.6 0.2 6.8E-06 47.5 3.5 21 91-111 5-25 (218)
433 3tlx_A Adenylate kinase 2; str 89.6 0.25 8.5E-06 48.0 4.3 27 89-115 28-54 (243)
434 2pbr_A DTMP kinase, thymidylat 89.6 0.17 6E-06 46.6 3.0 21 92-112 2-22 (195)
435 1z47_A CYSA, putative ABC-tran 89.6 0.17 5.9E-06 52.2 3.2 22 90-111 41-62 (355)
436 3a4m_A L-seryl-tRNA(SEC) kinas 89.6 0.19 6.5E-06 49.4 3.4 24 90-113 4-27 (260)
437 1g7s_A Translation initiation 89.6 1.1 3.6E-05 49.7 9.7 80 388-472 462-548 (594)
438 1lw7_A Transcriptional regulat 89.5 0.17 5.8E-06 52.5 3.1 23 90-112 170-192 (365)
439 2pez_A Bifunctional 3'-phospho 89.5 0.21 7E-06 45.8 3.4 23 90-112 5-27 (179)
440 1gvn_B Zeta; postsegregational 89.5 0.22 7.7E-06 49.8 3.9 27 88-114 31-57 (287)
441 2oap_1 GSPE-2, type II secreti 89.5 0.14 4.7E-06 55.8 2.5 21 91-111 261-281 (511)
442 2yyz_A Sugar ABC transporter, 89.4 0.18 6.2E-06 52.2 3.2 22 90-111 29-50 (359)
443 2it1_A 362AA long hypothetical 89.3 0.19 6.5E-06 52.1 3.2 22 90-111 29-50 (362)
444 3rlf_A Maltose/maltodextrin im 89.3 0.19 6.5E-06 52.4 3.2 22 90-111 29-50 (381)
445 1e4v_A Adenylate kinase; trans 89.2 0.23 7.9E-06 47.0 3.6 24 92-115 2-25 (214)
446 1v43_A Sugar-binding transport 89.1 0.2 6.8E-06 52.1 3.2 22 90-111 37-58 (372)
447 1f2t_A RAD50 ABC-ATPase; DNA d 89.1 0.22 7.6E-06 44.5 3.2 22 92-113 25-46 (149)
448 3nwj_A ATSK2; P loop, shikimat 89.0 0.22 7.5E-06 48.8 3.4 26 90-115 48-73 (250)
449 3hr8_A Protein RECA; alpha and 89.0 0.96 3.3E-05 46.6 8.3 25 89-113 60-84 (356)
450 2z0h_A DTMP kinase, thymidylat 89.0 0.19 6.6E-06 46.4 2.8 21 92-112 2-22 (197)
451 3h4m_A Proteasome-activating n 88.9 1.6 5.4E-05 42.9 9.7 25 89-113 50-74 (285)
452 3syl_A Protein CBBX; photosynt 88.9 0.88 3E-05 45.3 7.9 26 88-113 65-90 (309)
453 3b9p_A CG5977-PA, isoform A; A 88.9 1 3.5E-05 44.6 8.4 24 90-113 54-77 (297)
454 1p9r_A General secretion pathw 88.9 0.2 7E-06 52.9 3.2 24 90-113 167-190 (418)
455 2zr9_A Protein RECA, recombina 88.8 0.66 2.2E-05 47.7 6.9 24 89-112 60-83 (349)
456 1ak2_A Adenylate kinase isoenz 88.8 0.28 9.7E-06 47.1 4.0 26 90-115 16-41 (233)
457 2qz4_A Paraplegin; AAA+, SPG7, 88.7 3.6 0.00012 39.5 12.0 25 89-113 38-62 (262)
458 1u94_A RECA protein, recombina 88.6 0.8 2.7E-05 47.2 7.5 24 90-113 63-86 (356)
459 3be4_A Adenylate kinase; malar 88.6 0.26 9E-06 46.8 3.6 25 91-115 6-30 (217)
460 3sr0_A Adenylate kinase; phosp 88.6 0.27 9.4E-06 46.6 3.6 25 92-116 2-26 (206)
461 3d31_A Sulfate/molybdate ABC t 88.5 0.18 6E-06 52.1 2.3 21 91-111 27-47 (348)
462 3io5_A Recombination and repai 88.4 2.7 9.3E-05 42.5 10.9 21 92-112 30-50 (333)
463 2f6r_A COA synthase, bifunctio 88.4 0.27 9.2E-06 49.0 3.6 23 89-111 74-96 (281)
464 1jbk_A CLPB protein; beta barr 88.3 0.32 1.1E-05 44.1 3.9 24 90-113 43-66 (195)
465 2x8a_A Nuclear valosin-contain 88.3 0.26 9E-06 48.9 3.4 24 91-114 45-68 (274)
466 2w0m_A SSO2452; RECA, SSPF, un 88.3 0.25 8.6E-06 46.8 3.2 21 91-111 24-44 (235)
467 1ixz_A ATP-dependent metallopr 88.1 0.3 1E-05 47.5 3.7 23 91-113 50-72 (254)
468 1m7g_A Adenylylsulfate kinase; 87.9 0.32 1.1E-05 45.9 3.6 23 89-111 24-46 (211)
469 2grj_A Dephospho-COA kinase; T 87.9 0.35 1.2E-05 45.3 3.8 27 89-115 11-37 (192)
470 3ake_A Cytidylate kinase; CMP 87.8 0.32 1.1E-05 45.4 3.6 24 92-115 4-27 (208)
471 2xb4_A Adenylate kinase; ATP-b 87.8 0.33 1.1E-05 46.4 3.7 24 92-115 2-25 (223)
472 1fnn_A CDC6P, cell division co 87.7 3 0.0001 42.6 11.3 25 90-114 44-68 (389)
473 3bh0_A DNAB-like replicative h 87.6 0.24 8.4E-06 50.2 2.7 24 90-113 68-91 (315)
474 3qf7_A RAD50; ABC-ATPase, ATPa 87.5 0.28 9.5E-06 50.9 3.2 22 92-113 25-46 (365)
475 3r20_A Cytidylate kinase; stru 87.3 0.37 1.3E-05 46.6 3.7 25 91-115 10-34 (233)
476 1xwi_A SKD1 protein; VPS4B, AA 87.3 1.5 5.2E-05 44.3 8.5 24 90-113 45-68 (322)
477 3u61_B DNA polymerase accessor 87.2 4.8 0.00017 40.2 12.2 39 500-549 282-320 (324)
478 4eaq_A DTMP kinase, thymidylat 87.0 0.41 1.4E-05 46.1 3.8 26 89-114 25-50 (229)
479 3bgw_A DNAB-like replicative h 86.9 0.34 1.2E-05 51.6 3.5 24 90-113 197-220 (444)
480 1iy2_A ATP-dependent metallopr 86.8 0.4 1.4E-05 47.4 3.7 23 91-113 74-96 (278)
481 1a7j_A Phosphoribulokinase; tr 86.7 0.24 8.1E-06 49.7 2.0 22 90-111 5-26 (290)
482 1cr0_A DNA primase/helicase; R 86.6 0.32 1.1E-05 48.5 2.9 22 90-111 35-56 (296)
483 3pvs_A Replication-associated 86.5 2.9 9.9E-05 44.4 10.5 25 90-114 50-74 (447)
484 3euj_A Chromosome partition pr 86.5 0.35 1.2E-05 52.0 3.2 21 91-111 30-50 (483)
485 1q57_A DNA primase/helicase; d 86.4 0.56 1.9E-05 50.8 4.9 25 90-114 242-266 (503)
486 1r6b_X CLPA protein; AAA+, N-t 86.4 3.1 0.00011 47.3 11.4 93 90-205 488-582 (758)
487 2bjv_A PSP operon transcriptio 86.3 2.3 7.8E-05 41.3 9.0 23 91-113 30-52 (265)
488 1in4_A RUVB, holliday junction 86.3 0.42 1.4E-05 48.7 3.6 25 91-115 52-76 (334)
489 2npi_A Protein CLP1; CLP1-PCF1 86.3 0.36 1.2E-05 51.7 3.2 23 89-111 137-159 (460)
490 1xp8_A RECA protein, recombina 86.2 1.1 3.8E-05 46.3 6.9 24 90-113 74-97 (366)
491 1q3t_A Cytidylate kinase; nucl 86.2 0.49 1.7E-05 45.5 3.9 27 89-115 15-41 (236)
492 1lv7_A FTSH; alpha/beta domain 86.1 0.45 1.5E-05 46.3 3.7 24 91-114 46-69 (257)
493 1n0w_A DNA repair protein RAD5 86.1 0.4 1.4E-05 45.8 3.2 23 90-112 24-46 (243)
494 2p65_A Hypothetical protein PF 86.1 0.38 1.3E-05 43.5 2.9 25 89-113 42-66 (187)
495 2w58_A DNAI, primosome compone 86.0 0.45 1.5E-05 44.3 3.5 23 91-113 55-77 (202)
496 3vfd_A Spastin; ATPase, microt 86.0 3.2 0.00011 43.0 10.4 24 90-113 148-171 (389)
497 2r8r_A Sensor protein; KDPD, P 85.9 0.56 1.9E-05 45.1 4.1 22 91-112 7-28 (228)
498 1x6v_B Bifunctional 3'-phospho 85.9 5.5 0.00019 44.1 12.6 25 89-113 51-75 (630)
499 2axn_A 6-phosphofructo-2-kinas 85.9 0.67 2.3E-05 50.4 5.2 23 91-113 36-58 (520)
500 2obl_A ESCN; ATPase, hydrolase 85.8 0.4 1.4E-05 49.4 3.2 30 85-114 66-95 (347)
No 1
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=100.00 E-value=2.3e-105 Score=916.56 Aligned_cols=523 Identities=61% Similarity=0.986 Sum_probs=470.6
Q ss_pred cCCCCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeec-------Cee
Q 007325 84 VIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-------KHR 156 (608)
Q Consensus 84 ~~~~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~-------~~~ 156 (608)
..+.+++|||||+||.|||||||+++|++.+|.+.+.|+++.|++++|+++.|++||||+.++..++.|+ ++.
T Consensus 7 ~~p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~ 86 (709)
T 4fn5_A 7 TTPINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYR 86 (709)
T ss_dssp CSCGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEE
T ss_pred CCchHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEE
Confidence 3466899999999999999999999999999999999999999999999999999999999999999995 689
Q ss_pred EEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCCcHHHHHHHHHHhhC
Q 007325 157 INIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLG 236 (608)
Q Consensus 157 i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~ 236 (608)
|||||||||.||..|+.++++.+|+||+||||.+|++.||+.+|+++.++++|+++|+||||+..+++..+++++++.++
T Consensus 87 iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a~~~~~~~ei~~~l~ 166 (709)
T 4fn5_A 87 VNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGANFLRVVEQIKKRLG 166 (709)
T ss_dssp EEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTCCHHHHHHHHHHHHC
T ss_pred EEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCccHHHHHHHhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEeccCCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHHhcCCCC
Q 007325 237 AKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEP 316 (608)
Q Consensus 237 ~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l~~~~~ 316 (608)
..+.++++|++.+++|.|++|++++++++|.....|+.+...++|.++.+....+|..++|.+++.||+++++|+++.++
T Consensus 167 ~~~~~~~~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~l~~~~~~~~~~ 246 (709)
T 4fn5_A 167 HTPVPVQLAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSSMVEAAAEANEELMNKYLEEGEL 246 (709)
T ss_dssp SCEEESEEEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCCCHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHSCC
T ss_pred cceeeeecccCchhccceEEEEeeeeEEEeecccCCceeccccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCc
Confidence 99999999999999999999999999999998888999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhhcccCcceeeeeeccCCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccchhccccCCCCCeEEEEEE
Q 007325 317 DEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFK 396 (608)
Q Consensus 317 ~~~el~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K 396 (608)
+.+++...+++....+.++|++|+||+++.|++.|||+|++++|+|.+++......+++......+.|++++|++++|||
T Consensus 247 ~~~~~~~~l~~~~~~~~~~pv~~gsa~~~~gv~~lLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~d~~~pl~~~VfK 326 (709)
T 4fn5_A 247 SEAEIKEGLRLRTLACEIVPAVCGSSFKNKGVPLVLDAVIDYLPAPTEIPAIKGVSPDDETVEDERHADDNEPFSSLAFK 326 (709)
T ss_dssp CHHHHHHHHHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHSCCTTSSCCEECBCCC-CCSCCEECSCTTSCCEEEEEE
T ss_pred cHHHHHHHHHHhhhhceeeeeeeeecccCCchHHHHHHHHhhCCCCcccccccccCCccccccccccCCccCcceEEEEE
Confidence 99999999999999999999999999999999999999999999999877655443333344556789999999999999
Q ss_pred eeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCeeecCCEEEEcCCCcccccceeccCCCC
Q 007325 397 IMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHP 476 (608)
Q Consensus 397 ~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~GdtL~~~~~~ 476 (608)
+..|++.|+++|+|||||+|++||+|+|..+++.+++++++.++|++++++++|.|||||+|.|++++.+|||||+.+.+
T Consensus 327 ~~~d~~~G~la~~RV~sGtl~~G~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~Gl~~~~~gdTl~~~~~~ 406 (709)
T 4fn5_A 327 IATDPFVGTLTFARVYSGVLSSGDSVLNSVKGKKERVGRMVQMHANQREEIKEVRAGDIAALIGMKDVTTGDTLCSIEKP 406 (709)
T ss_dssp CCCBTTTBCCCEEEEEESCEETTCBCBCTTTCCCCBCCCEECCCSSCCCEESEECTTCEEEECSCSSCCTTCEEECSSSC
T ss_pred eecccCCCceEEEeccCCCCCCCCEEEEecCCcEEeecceeEeecceeeEeeeecCCCeeeecCCCcCccCCEecCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCceEEEEEEeCCCCCHHHHHHHHHHHHHhCCeeEEEEeCCCCcEEEEeeChhhHHHHHHHHHhhcCeEEEE
Q 007325 477 ILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANV 556 (608)
Q Consensus 477 ~~l~~~~~~~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~vl~g~GelHLev~~~rL~~~f~vev~~ 556 (608)
..++++.+|+|+++++|+|.++.|++||.+||++|++|||+|++++++||||++|+||||||||||++||+++||+++.+
T Consensus 407 ~~~~~~~~~~Pvv~vavep~~~~d~~kL~~~L~kL~~eDPsl~v~~~eetge~vi~g~GELHLei~l~rLr~e~gvev~v 486 (709)
T 4fn5_A 407 IILERMDFPEPVISVAVEPKTKADQEKMGIALGKLAQEDPSFRVKTDEESGQTIISGMGELHLDIIVDRMKREFGVEANI 486 (709)
T ss_dssp CBCC----CCCSEEEEECBSSTTTHHHHHHHHHHHHHHCTTCEEEEETTTTEEEEEESCHHHHHHHHHHHHTTTCCCBCC
T ss_pred ccCCCCCCCCcceEEEEecCCHHHhhhhHHHHHHHHHhCCeEEEEEecCCCcEEEEEECHHHHHHHHHHHHHHhCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecceEEEEEeeec-ceeEEEEEeeecCCCCeeEEEEEEEEec------CCCCcceee
Q 007325 557 GAPQVNYRESISK-VSEVKYVHKKQSGGQGQFADITVRFEPM------EVQCQKNIF 606 (608)
Q Consensus 557 s~p~V~yrETi~~-~~~~~~~~~kq~gg~gq~~~v~~~~ePl------~~g~g~~~~ 606 (608)
++|+|+|||||++ .++++++|+||+||+|||++||++++|+ ++|+|++|.
T Consensus 487 s~P~V~yrETi~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~e~g~~~~~~~f~ 543 (709)
T 4fn5_A 487 GKPQVAYRETITKDNVEIEGKFVRQSGGRGQFGHCWIRFSAADVDEKGNITEGLVFE 543 (709)
T ss_dssp BCCCCCCEEECCCCSEEEEEEEEEEETTEEEEEEEEEEEECCCBC-CCCBCCEEEEE
T ss_pred eeceEEEEEEEecCCceecceeeeccCCcCcceeEEEEEeeccccccCCCcCceEEe
Confidence 9999999999987 4678999999999999999999999997 457888874
No 2
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=100.00 E-value=1.8e-101 Score=880.57 Aligned_cols=521 Identities=61% Similarity=1.003 Sum_probs=491.8
Q ss_pred CCCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC-------eeEE
Q 007325 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK-------HRIN 158 (608)
Q Consensus 86 ~~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~-------~~i~ 158 (608)
+.++++||+|+||+|||||||+++|++.+|.+...|.+++|.+++|+++.|+++|+|+......+.|++ +.++
T Consensus 6 ~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~ 85 (704)
T 2rdo_7 6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRIN 85 (704)
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEE
Confidence 456789999999999999999999999889888888888899999999999999999999999999987 9999
Q ss_pred EEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCCcHHHHHHHHHHhhCCc
Q 007325 159 IIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAK 238 (608)
Q Consensus 159 liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~ 238 (608)
|||||||.+|..++.++++.+|++|+|||++++++.++..+|+++...++|+++|+||+|+..+++.++++++++.++..
T Consensus 86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~~~~~~~~~l~~~l~~~ 165 (704)
T 2rdo_7 86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRLGAN 165 (704)
T ss_pred EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccccHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEeccCCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHHhcCCCCCH
Q 007325 239 PLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDE 318 (608)
Q Consensus 239 ~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l~~~~~~~ 318 (608)
++++++|++.+++|+|++|++.+++++|++...|..+...++|+++.+...++|.+|+|.+++.||++||+||+|++++.
T Consensus 166 ~~~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~ae~dd~l~e~~l~~~~l~~ 245 (704)
T 2rdo_7 166 PVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLGGEELTE 245 (704)
T ss_pred ceeEEccccccccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCH
Confidence 99999999999999999999999999997633577788889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCcceeeeeeccCCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccchhccccCCCCCeEEEEEEee
Q 007325 319 ETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIM 398 (608)
Q Consensus 319 ~el~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~ 398 (608)
+++...+++.+..+.++||||+||++|.|++.|||+|++++|+|.+++..++..+........+.|++++||+++|||++
T Consensus 246 ~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~VfK~~ 325 (704)
T 2rdo_7 246 AEIKGALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDDEPFSALAFKIA 325 (704)
T ss_pred HHHHHHHHHHHHhCCeeEEEEeecccCccHHHHHHHHHHHCCChhhcccccccCCcccccccccccCCCCceEEEEEEEE
Confidence 99999999999999999999999999999999999999999999886543322111011124567889999999999999
Q ss_pred ecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCeeecCCEEEEcCCCcccccceeccCCCCcc
Q 007325 399 SDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPIL 478 (608)
Q Consensus 399 ~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~GdtL~~~~~~~~ 478 (608)
.|+++|+++|+|||||+|++||.|+|.++++.++|++|+.++|++++++++|.|||||+|.|++++.+|||||+...+..
T Consensus 326 ~d~~~G~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~gl~~~~~GdTl~~~~~~~~ 405 (704)
T 2rdo_7 326 TDPFVGNLTFFRVYSGVVNSGDTVLNSVKAARERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDVTTGDTLCDPDAPII 405 (704)
T ss_pred EcCCCceEEEEEEEeeeecCCCEEEeCCCCcEEEeceEEEEeCCCceEcceeCCCCEEEEeCcccCccCCEEeCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred cCCCCCCCceEEEEEEeCCCCCHHHHHHHHHHHHHhCCeeEEEEeCCCCcEEEEeeChhhHHHHHHHHHhhcCeEEEEec
Q 007325 479 LERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGA 558 (608)
Q Consensus 479 l~~~~~~~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~vl~g~GelHLev~~~rL~~~f~vev~~s~ 558 (608)
+++++++.|+++++|+|+++.|++||.++|++|++|||+|++++|+||||++|+|||||||||+++||+++||+++.+++
T Consensus 406 l~~~~~~~Pv~~~ai~p~~~~d~~kl~~~L~~L~~eDp~l~v~~~~etge~il~g~GelhLei~~~rL~~~f~v~v~~~~ 485 (704)
T 2rdo_7 406 LERMEFPEPVISIAVEPKTKADQEKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREFNVEANVGK 485 (704)
T ss_pred cCCCCCCCceEEEEEEECChHHHHHHHHHHHHHHhhCCEEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHHhCceEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEeeecce-eEEEEEeeecCCCCeeEEEEEEEEec---CCCCcceee
Q 007325 559 PQVNYRESISKVS-EVKYVHKKQSGGQGQFADITVRFEPM---EVQCQKNIF 606 (608)
Q Consensus 559 p~V~yrETi~~~~-~~~~~~~kq~gg~gq~~~v~~~~ePl---~~g~g~~~~ 606 (608)
|+|+|||||++++ +++++|+||+||+||||+|+|++||+ |+|+|++|.
T Consensus 486 p~V~yrEti~~~~~~~~~~~~kq~gg~~q~~~v~~~~ePl~~~~~g~g~~f~ 537 (704)
T 2rdo_7 486 PQVAYRETIRQKVTDVEGKHAKQSGGRGQYGHVVIDMYPLEPGSNPKGYEFI 537 (704)
T ss_pred CEEEEEEeeccccccceeeeccccCCCCeeEEEEEEEEECCCCCCCCCcEEE
Confidence 9999999999999 99999999999999999999999999 999999984
No 3
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=3.6e-100 Score=869.34 Aligned_cols=520 Identities=57% Similarity=0.942 Sum_probs=464.6
Q ss_pred CCCCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCC
Q 007325 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG 164 (608)
Q Consensus 85 ~~~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 164 (608)
.+.+++++|+|+||+|+|||||+|+|++.++.+...+.++++.+++|+.+.|+++|+|+......+.|+++.++||||||
T Consensus 5 ~~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 84 (693)
T 2xex_A 5 FSLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPG 84 (693)
T ss_dssp SCSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCC
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcC
Confidence 45677899999999999999999999988888888788888889999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCCcHHHHHHHHHHhhCCccEEEec
Q 007325 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQL 244 (608)
Q Consensus 165 ~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~ 244 (608)
|.+|..++.++++.+|++|+|+|++++++.++..+|+.+...++|+++|+||+|+..+++.++++++++.++..+.+.++
T Consensus 85 ~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~~~~~~~~~l~~~l~~~~~~~~i 164 (693)
T 2xex_A 85 HVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGANFEYSVSTLHDRLQANAAPIQL 164 (693)
T ss_dssp CSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHHHCCCEEESEE
T ss_pred CcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCccccchHHHHHHHHHHhCCCceeEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCeeeEEecccceeEEec-CcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHHhcCCCCCHHHHHH
Q 007325 245 PVGAEDNFKGVVDLVKMKAIIWS-GEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKK 323 (608)
Q Consensus 245 pi~~~~~~~g~idl~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l~~~~~~~~el~~ 323 (608)
|++.+.+|.+++|++.++.++|. + .|+.+...++|.++.+.++.+|++++|.+++.||++|++||+|.+++.+++..
T Consensus 165 pisa~~~~~~l~d~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~e~dd~l~e~~l~~~~~~~~~~~~ 242 (693)
T 2xex_A 165 PIGAEDEFEAIIDLVEMKCFKYTND--LGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEISVSELKE 242 (693)
T ss_dssp EECCGGGCCEEEETTTTEEEECCSS--SSCSCEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHTTCCCCHHHHHH
T ss_pred ecccCCCcceeeeeecceeEEeccC--CCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCCCCCHHHHHH
Confidence 99999999999999999999997 3 36778888999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccCcceeeeeeccCCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccchhccccCCCCCeEEEEEEeeecCCC
Q 007325 324 LIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFV 403 (608)
Q Consensus 324 ~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~~ 403 (608)
.+++.+..+.++||||+||++|.|++.|||+|++++|+|.+++..++..+........+.|++++||+++|||++.|+++
T Consensus 243 ~l~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~VfK~~~d~~~ 322 (693)
T 2xex_A 243 AIRQATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAFKVMTDPYV 322 (693)
T ss_dssp HHHHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCGGGSCCEEEEETTEEEEEEEECSCTTSCCEEEEEEEEEETTT
T ss_pred HHHHHHHhCCeeeEEEeecccCcCHHHHHHHHHHHCCCchhcccccccCCCccccceeecCCCCCceEEEEEEeeecCCC
Confidence 99999999999999999999999999999999999999987543221111001123456788999999999999999999
Q ss_pred ceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCeeecCCEEEEcCCCcccccceeccCCCCcccCCCC
Q 007325 404 GSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERMD 483 (608)
Q Consensus 404 G~la~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~GdtL~~~~~~~~l~~~~ 483 (608)
|+++|+|||||+|++||+|+|.++++.++|++|+.++|++++++++|.|||||+|.|++++.+|||||+...+..+++++
T Consensus 323 g~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~GdTl~~~~~~~~~~~~~ 402 (693)
T 2xex_A 323 GKLTFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHANSRQEIDTVYSGDIAAAVGLKDTGTGDTLCGEKNDIILESME 402 (693)
T ss_dssp EEEEEEEEEESEEETTEEEEETTTTEEEEECCEEEECSSCEEECSEEETTCEEEEESCSSCCTTCEEEETTCCEECCCCS
T ss_pred ceEEEEEEEeeeEecCCEEEecCCCceEEeceEEEEeCCCceEccccCcCCEEEEeCcccCccCCEEecCCCccccCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988888999999
Q ss_pred CCCceEEEEEEeCCCCCHHHHHHHHHHHHHhCCeeEEEEeCCCCcEEEEeeChhhHHHHHHHHHhhcCeEEEEecceEEE
Q 007325 484 FPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNY 563 (608)
Q Consensus 484 ~~~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~vl~g~GelHLev~~~rL~~~f~vev~~s~p~V~y 563 (608)
++.|+++++|+|+++.|++||.+||++|++|||+|++++|+||||++|+|||||||||+++||+++||+++.+++|+|+|
T Consensus 403 ~~~Pv~~~av~p~~~~d~~kl~~~L~~l~~eDp~l~~~~~~et~e~il~g~Gelhlei~~~rL~~~~~v~v~~~~p~V~y 482 (693)
T 2xex_A 403 FPEPVIHLSVEPKSKADQDKMTQALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEFNVECNVGAPMVSY 482 (693)
T ss_dssp SCSCSEEEEEEESSHHHHHHHHHHHHHHHHHCTTCEEEC---CCCEEEEESSHHHHHHHHHHHHHHSCCCEEECCCEECC
T ss_pred CCCceEEEEEEeCCchhHHHHHHHHHHHHhhCCeEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHHhCceEEEeCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeecceeEEEEEeeecCCCCeeEEEEEEEEecCCCCcceee
Q 007325 564 RESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEVQCQKNIF 606 (608)
Q Consensus 564 rETi~~~~~~~~~~~kq~gg~gq~~~v~~~~ePl~~g~g~~~~ 606 (608)
||||+++++++++|+||||||||||+|+|++||+++|+|++|.
T Consensus 483 rEti~~~~~~~~~~~kq~gg~~~~~~v~~~~ePl~~g~g~~f~ 525 (693)
T 2xex_A 483 RETFKSSAQVQGKFSRQSGGRGQYGDVHIEFTPNETGAGFEFE 525 (693)
T ss_dssp EEEESSCEEEEEEEEECTTSSCEEEEEEEEEEECCTTCCCEEE
T ss_pred EEEeccccceeEeeccccCCCCceEEEEEEEEECCCCCCCEEE
Confidence 9999999999999999999999999999999999999999985
No 4
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=100.00 E-value=5.3e-100 Score=867.69 Aligned_cols=519 Identities=59% Similarity=0.959 Sum_probs=419.2
Q ss_pred CCCCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCC
Q 007325 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG 164 (608)
Q Consensus 85 ~~~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 164 (608)
.+.++++||+|+||+|||||||+++|++.++.+...+.++.+.+++|+++.|+++|+|+......+.|+++.++||||||
T Consensus 7 ~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG 86 (691)
T 1dar_A 7 YDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPG 86 (691)
T ss_dssp CCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCS
T ss_pred CccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcC
Confidence 34567899999999999999999999999998888888888899999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCCcHHHHHHHHHHhhCCccEEEec
Q 007325 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQL 244 (608)
Q Consensus 165 ~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~ 244 (608)
|.+|..++.++++.+|++|+|+|+++++..++..+|+.+...++|+++|+||+|+..+++.++++++++.++.++.+.++
T Consensus 87 ~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~l~~~l~~~~~~~~~ 166 (691)
T 1dar_A 87 HVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQL 166 (691)
T ss_dssp STTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHTTCCCEEECEE
T ss_pred ccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccCCHHHHHHHHHHHhCCCccceec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHHhcCCCCCHHHHHHH
Q 007325 245 PVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKL 324 (608)
Q Consensus 245 pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l~~~~~~~~el~~~ 324 (608)
|++.+.+|.|++|++.+++|+|.+. .|..+...++|+++.+.++.+|++++|.+++.||++|++||+|++++.+++...
T Consensus 167 Pi~~~~~~~g~~d~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~e~dd~l~e~~l~~~~~~~~~~~~~ 245 (691)
T 1dar_A 167 PIGREDTFSGIIDVLRMKAYTYGND-LGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAA 245 (691)
T ss_dssp EESCGGGCCEEEETTTTEEEEECST-TSCCEEEECCCGGGHHHHHHHHHHHHHHHTTTCHHHHHHHHHTCCCCHHHHHHH
T ss_pred cccCCCcccchhhhhcceeeEeccC-CCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHCCCCCCHHHHHHH
Confidence 9999999999999999999999721 366678889999999999999999999999999999999999999999999999
Q ss_pred HHhhcccCcceeeeeeccCCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccchhccccCCCCCeEEEEEEeeecCCCc
Q 007325 325 IRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVG 404 (608)
Q Consensus 325 l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~~G 404 (608)
+++.+..+.++||+|+||++|.|+++|||+|++++|+|.+++..++..+ .+....+.|++++|++++|||++.|+++|
T Consensus 246 ~~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~Vfk~~~d~~~G 323 (691)
T 1dar_A 246 IRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTP--EGEVVEIHPDPNGPLAALAFKIMADPYVG 323 (691)
T ss_dssp HHHHHHTTSCEEEEECBGGGTBSHHHHHHHHHHHSCCTTTSCCEEEECS--SSCEEEECCCTTSCCEEEEEEEEEETTTE
T ss_pred HHHHHHhCcEeEEEEeecccCcCHHHHHHHHHHhCCChhhcccccccCC--CccccccccCCCCCcEEEEEEEEEcCCCC
Confidence 9999999999999999999999999999999999999998654322111 11234567889999999999999999999
Q ss_pred eEEEEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCeeecCCEEEEcCCCcccccceeccCCCC-cccCCCC
Q 007325 405 SLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHP-ILLERMD 483 (608)
Q Consensus 405 ~la~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~GdtL~~~~~~-~~l~~~~ 483 (608)
+++|+|||||+|++||.|+|.++++.++|++|+.++|++++++++|.|||||+|.|++++.+|||||+...+ ..++++.
T Consensus 324 ~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~Gdtl~~~~~~~~~l~~~~ 403 (691)
T 1dar_A 324 RLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIE 403 (691)
T ss_dssp EEEEEEEEESEEESSCEEEETTTTEEEECCEEEEECSSCEEEESEEETTCEEEEECCSSCCTTCEEEETTCCCCBCC---
T ss_pred cEEEEEEeeeeEecCCEEEecCCCcEEEEceEEEEeCCCceEcceecCCCEEEEeCcccCccCCEEecCCCcccccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998888 8899999
Q ss_pred CCCceEEEEEEeCCCCCHHHHHHHHHHHHHhCCeeEEEEeCCCCcEEEEeeChhhHHHHHHHHHhhcCeEEEEecceEEE
Q 007325 484 FPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNY 563 (608)
Q Consensus 484 ~~~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~vl~g~GelHLev~~~rL~~~f~vev~~s~p~V~y 563 (608)
++.|+++++|+|+++.|++||.+||++|++|||+|++++|+||||++|+|||||||||+++||+++||+++.+++|+|+|
T Consensus 404 ~~~P~~~~ai~p~~~~d~~kl~~~L~~l~~eDp~l~v~~~~et~e~i~~g~Gelhlei~~~rL~~~~~v~v~~~~p~V~y 483 (691)
T 1dar_A 404 VPEPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFKVDANVGKPQVAY 483 (691)
T ss_dssp -----------------------------CCCCSCEEEC-----CEEEEESCCC---------CCCEEEBTTTBCCCBCC
T ss_pred CCCceEEEEEEECCchhHHHHHHHHHHHHhhCCeEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHhhCceEEEeCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeecceeEEEEEeeecCCCCeeEEEEEEEEecCCCCcceee
Q 007325 564 RESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEVQCQKNIF 606 (608)
Q Consensus 564 rETi~~~~~~~~~~~kq~gg~gq~~~v~~~~ePl~~g~g~~~~ 606 (608)
||||+++++++++|+||||||||||+|+|++||+++|+||+|.
T Consensus 484 rEti~~~~~~~~~~~kq~gg~~~~~~v~~~~ePl~~g~g~~f~ 526 (691)
T 1dar_A 484 RETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEFV 526 (691)
T ss_dssp EEECSSCEEEEEEEEECCSSSCEEEEEEEEEEECCTTCCEEEE
T ss_pred EEeeccceeeeeeeccccCCCCceEEEEEEEEECCCCCCCEEe
Confidence 9999999999999999999999999999999999999999885
No 5
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=100.00 E-value=6.4e-99 Score=836.14 Aligned_cols=486 Identities=27% Similarity=0.409 Sum_probs=402.1
Q ss_pred CCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCC----ccccchhhhhhcceeEeecEEEEeecCeeEEEEeC
Q 007325 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGT----ATMDWMEQEQERGITITSAATTTYWNKHRINIIDT 162 (608)
Q Consensus 87 ~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~----~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDT 162 (608)
.+++|||||+||+|||||||+++||+.+|.+.+.|.+++|. +++|+++.|++|||||.++..++.|++++||||||
T Consensus 28 ~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDT 107 (548)
T 3vqt_A 28 AARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDT 107 (548)
T ss_dssp HHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECC
T ss_pred ccccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeC
Confidence 45689999999999999999999999999999999998774 89999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCCcHHHHHHHHHHhhCCccEEE
Q 007325 163 PGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVV 242 (608)
Q Consensus 163 PG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~ 242 (608)
|||.||..++.++|+.+|+||+||||.+|+++||+.+|+++.++++|+++|+||||+.++++.+++++|++.|+..++|+
T Consensus 108 PGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~ad~~~~~~~i~~~l~~~~~p~ 187 (548)
T 3vqt_A 108 PGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREALHPLDVMADIEQHLQIECAPM 187 (548)
T ss_dssp CCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCCCHHHHHHHHHHHHTSEEEES
T ss_pred CCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhcchhHhhhhhhhhcCCceEeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHHh-cCCCCCHHHH
Q 007325 243 QLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYL-EGNEPDEETI 321 (608)
Q Consensus 243 ~~pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l-~~~~~~~~el 321 (608)
++||+.+..|.|++|++.++++.|.....+.......+.....+...+......+ ..+..++.+. .+.+.+.
T Consensus 188 ~~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~--- 260 (548)
T 3vqt_A 188 TWPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYLGDQAE----QLRMDLALLEEAGTPFDE--- 260 (548)
T ss_dssp EEEESCGGGCCEEEETTTTEEEECC-------CCCEECCSTTCTHHHHHHGGGHH----HHHHHHHHHHHHCCCCCH---
T ss_pred EeeeecCCcccceEeeeeeeeeecccccCCcccccccccccchHHHHHHHHHHHH----HhhhHHHHHhhccCchhH---
Confidence 9999999999999999999999998754333332222221111111111111111 1111111111 1233332
Q ss_pred HHHHHhhcccCcceeeeeeccCCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccchhccccCCCCCeEEEEEEeeec-
Q 007325 322 KKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSD- 400 (608)
Q Consensus 322 ~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d- 400 (608)
+.++.+.++|||||||++|.||++|||+|++++|+|.+.+..... ..+.+.||+++|||+..+
T Consensus 261 -----e~~~~g~~~PV~~gSA~~~~Gv~~LLd~iv~~~PsP~~~~~~~~~-----------~~~~~~p~~a~vfKi~~~~ 324 (548)
T 3vqt_A 261 -----ERYLKGELTPVFFGSAINNFGVREMLDMFVEFAPGPQPRPAATRV-----------VEPGEEAFTGVVFKIQANM 324 (548)
T ss_dssp -----HHHHTTSEEEEEECBGGGTBSHHHHHHHHHHHSCCSCCEEBSSSE-----------ECTTCSSCEEEEEEEECC-
T ss_pred -----HHHHhCCcceeeecccccCcCHHHHHHHHHHhCCCCCCccccccc-----------cCCCCcCceEEEEEEEccC
Confidence 234568899999999999999999999999999999875432211 123468999999999876
Q ss_pred --CCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCeeecCCEEEEcCCCcccccceeccCCCCcc
Q 007325 401 --PFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPIL 478 (608)
Q Consensus 401 --~~~G~la~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~GdtL~~~~~~~~ 478 (608)
+++|+++|+|||||+|++||.|+|.++++++|+++++.++|++++++++|.|||||+|.|++++.+|||||+.+.+..
T Consensus 325 ~~~~~Grla~~RV~sG~l~~g~~v~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~GDTl~~~~~~~~ 404 (548)
T 3vqt_A 325 DKAHRDRMAFLRICSGTFTRGMRLKHHRTGKDVTVANATIFMAQDRTGVEEAFPGDIIGIPNHGTIKIGDTFTESKEVLK 404 (548)
T ss_dssp ------CEEEEEEEESCEETTCEEEETTTTEEEECTTCEECCCSSCCSSCEECTTCEEEEECSSCCCTTCEEESSSSCCC
T ss_pred CcCCCCeEEEEEEecceecCCCEEEeeccccccccchhhhhccccccccCEEecCCEEEecCCccCccCCEecCCCCccc
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999988889
Q ss_pred cCCCCCCCceEEEEEEeCCCCCHHHHHHHHHHHHHhCCeeEEEEeCCCCcEEEEeeChhhHHHHHHHHHhhcCeEEE---
Q 007325 479 LERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEAN--- 555 (608)
Q Consensus 479 l~~~~~~~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~vl~g~GelHLev~~~rL~~~f~vev~--- 555 (608)
+++++++.|+++++|+|+++.|.+||.++|++|++||| +.+.++++|||++|+|||||||||+++||+++|||++.
T Consensus 405 ~~~i~~~~P~~~~av~p~~~~d~~kl~~~L~~L~eed~-~~v~~~~et~e~il~g~GeLHLeI~~erL~~ey~vev~~e~ 483 (548)
T 3vqt_A 405 FVGIPNFAPEHFRRVRLKNPLKAKQLQKGLEQLAEEGA-VQLFRPLVNNDYILGAVGVLQFDVIVARLADEYGVDAVYEG 483 (548)
T ss_dssp BCCCEEECCSEEEEEEESCGGGHHHHHHHHHHHHHTTS-SEEEEESSSCCCEEEESSTHHHHHHHHHHHHHHCCCEEEEE
T ss_pred cCCCCCCCCcceeeeeeCCchhHHHHHHHHHHhhhcCc-eeEEEECCCCcEEEEEECHHHHHHHHHHHHHHhCCCEEEee
Confidence 99999999999999999999999999999999999998 56778899999999999999999999999999999976
Q ss_pred --EecceEEEEEeeecceeEEEEEeeecCCCCeeEEEEEEEEe
Q 007325 556 --VGAPQVNYRESISKVSEVKYVHKKQSGGQGQFADITVRFEP 596 (608)
Q Consensus 556 --~s~p~V~yrETi~~~~~~~~~~~kq~gg~gq~~~v~~~~eP 596 (608)
++.|+|+|||||++.++++++||||+||+|||+.|+|.-.|
T Consensus 484 v~~~~P~V~YrEti~~~~~~~~~~kkq~g~~gq~~~V~L~~~~ 526 (548)
T 3vqt_A 484 VSTHTARWVYCEDKKIFADFQDYHRGELAVDAEGALAYLAPNP 526 (548)
T ss_dssp CSCCEEEEEECSCHHHHHHHHHHTGGGEEEETTSCEEEEESSH
T ss_pred ccccCceEEecCCccchhhhhhhhhheeeecCCCCEEEEecCH
Confidence 57899999999999999999999999999999999985443
No 6
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=100.00 E-value=3.4e-90 Score=784.54 Aligned_cols=489 Identities=31% Similarity=0.540 Sum_probs=466.0
Q ss_pred CCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCC
Q 007325 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (608)
Q Consensus 87 ~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 166 (608)
.++.++|+|+||+|||||||+++|+...+.+...|.+..|.+++|+.+.|+++|+|+......+.+.++.++|||||||.
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~ 85 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG 85 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc
Confidence 45679999999999999999999998888777777777888999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCCcHHHHHHHHHHhhCCccEEEeccC
Q 007325 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPV 246 (608)
Q Consensus 167 df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~pi 246 (608)
+|..++.++++.+|++++|+|++++++.++..+|+.+...++|+++|+||+|+. .+..++++++++.++ .+.+.++|+
T Consensus 86 ~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~-~~~~~~~~~l~~~l~-~~~~~~~Pi 163 (665)
T 2dy1_A 86 DFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG-GDYYALLEDLRSTLG-PILPIDLPL 163 (665)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC-CCHHHHHHHHHHHHC-SEEECEEEE
T ss_pred chHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh-hhHHHHHHHHHHHhC-CcceEEeee
Confidence 999999999999999999999999999999999999999999999999999999 889999999999999 888999999
Q ss_pred CCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHHhcCCCCCHHHHHHHHH
Q 007325 247 GAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIR 326 (608)
Q Consensus 247 ~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l~~~~~~~~el~~~l~ 326 (608)
+.+.+|.|++|++.+++|+|++ |. +...++|+++.+....+|++++|.+++.||+++++|++|.+++.+++...++
T Consensus 164 ~~~~~~~g~~d~~~~~~~~~~~---g~-~~~~~~~~~~~~~~~~~r~~l~e~~~~~d~~l~e~~l~~~~l~~~~~~~~~~ 239 (665)
T 2dy1_A 164 YEGGKWVGLIDVFHGKAYRYEN---GE-EREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEALEKAFH 239 (665)
T ss_dssp EETTEEEEEEETTTTEEEEEET---TE-EEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred cCCCcccchhhhhhhheeecCC---Cc-eeEecCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHCCCCCCHHHHHHHHH
Confidence 9999999999999999999976 43 7778899999999999999999999999999999999999999999999999
Q ss_pred hhcccCcceeeeeeccCCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccchhccccCCCCCeEEEEEEeeecCCCceE
Q 007325 327 KGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSL 406 (608)
Q Consensus 327 ~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~~G~l 406 (608)
+.+..+.++|++++||++|.||++||++|++++|+|.+. ++++|++++|||++.|+++|++
T Consensus 240 ~~~~~~~~~pv~~~SA~~~~Gv~~Ll~~i~~~lp~p~~~-------------------~~~~p~~~~V~k~~~d~~~G~~ 300 (665)
T 2dy1_A 240 EAVRRGLLYPVALASGEREIGVLPLLELILEALPSPTER-------------------FGDGPPLAKVFKVQVDPFMGQV 300 (665)
T ss_dssp HHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCHHHH-------------------HCSCSCEEEEEEEEEETTTEEE
T ss_pred HHHHhCCeeEEEEeecccCcCHHHHHHHHHHhCCCcccc-------------------CCCCCeEEEEEEEEEcCCCCeE
Confidence 999999999999999999999999999999999999641 0368999999999999999999
Q ss_pred EEEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCeeecCCEEEEcCCCcccccceeccCCCC--cccCCCCC
Q 007325 407 TFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHP--ILLERMDF 484 (608)
Q Consensus 407 a~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~GdtL~~~~~~--~~l~~~~~ 484 (608)
+|+|||||+|++||.|++.+ +.++|++|+.++|++++++++|.|||||+|.|++++.+|||||+...+ ..++++++
T Consensus 301 ~~~rV~sG~l~~g~~v~~~~--~~~~v~~l~~~~g~~~~~v~~a~aG~iv~i~gl~~~~~Gdtl~~~~~~~~~~l~~~~~ 378 (665)
T 2dy1_A 301 AYLRLYRGRLKPGDSLQSEA--GQVRLPHLYVPMGKDLLEVEEAEAGFVLGVPKAEGLHRGMVLWQGEKPESEEVPFARL 378 (665)
T ss_dssp EEEEEEESEECTTEEEBCTT--SCEEESSEEEEETTEEEEESCEETTCEEEESSCTTCCTTCEEESSSCCCGGGSCCCCC
T ss_pred EEEEEcccEEecCCEEEcCC--CeEEEeEEEEEeCCCeeECCEECCCCEEEEeCCccCccCCEEecCCCccccccCCCCC
Confidence 99999999999999999887 678999999999999999999999999999999999999999998877 78999999
Q ss_pred CCceEEEEEEeCCCCCHHHHHHHHHHHHHhCCeeEEEEeCCCCcEEEEeeChhhHHHHHHHHHhhcCeEEEEecceEEEE
Q 007325 485 PDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYR 564 (608)
Q Consensus 485 ~~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~vl~g~GelHLev~~~rL~~~f~vev~~s~p~V~yr 564 (608)
+.|+++++|+|.++.|.+||.++|++|++|||+|++++|+||||++|+|||||||||+++||+ +||+++.+++|+|+||
T Consensus 379 ~~P~~~~~i~p~~~~d~~kl~~~L~~l~~edp~l~v~~~~et~e~i~~g~Gelhlei~~~rl~-~~~v~v~~~~p~V~yr 457 (665)
T 2dy1_A 379 PDPNVPVALHPKGRTDEARLGEALRKLLEEDPSLKLERQEETGELLLWGHGELHLATAKERLQ-DYGVEVEFSVPKVPYR 457 (665)
T ss_dssp CCCCEEEEEEESSHHHHHHHHHHHHHHHHHCTTSEEEECTTTCCEEEEESSHHHHHHHHHHHH-HTTCCEEEECCCCCCE
T ss_pred CCceEEEEEEECChhhHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEecCHHHHHHHHHHHH-HCCceEEEeCCEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred EeeecceeEEEEEeeecCCCCeeEEEEEEEEecCCCCcceee
Q 007325 565 ESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEVQCQKNIF 606 (608)
Q Consensus 565 ETi~~~~~~~~~~~kq~gg~gq~~~v~~~~ePl~~g~g~~~~ 606 (608)
|||+++++++++|+||||||||||+|++++||++ |++|.
T Consensus 458 Eti~~~~~~~~~~~k~~gg~g~~~~v~~~~eP~~---g~~f~ 496 (665)
T 2dy1_A 458 ETIKKVAEGQGKYKKQTGGHGQYGDVWLRLEPAS---EYGFE 496 (665)
T ss_dssp EEESSCEEEEEEEEEEETTEEEEEEEEEEEEECS---SCEEE
T ss_pred EeeccceeeeeecccccCCCcceEEEEEEEEECC---CCEEe
Confidence 9999999999999999999999999999999998 77774
No 7
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=100.00 E-value=7.8e-95 Score=818.96 Aligned_cols=460 Identities=27% Similarity=0.449 Sum_probs=425.0
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCc
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 168 (608)
+||||||+||+|||||||+++|++.+|.+.+.|.++.|++++|+++.|++||||++++..++.|++++|||||||||.||
T Consensus 1 kIRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF 80 (638)
T 3j25_A 1 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDF 80 (638)
T ss_dssp CCCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSST
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCCcHHHHHHHHHHhhCCccEEEeccCCC
Q 007325 169 TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGA 248 (608)
Q Consensus 169 ~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~pi~~ 248 (608)
..++.++++.+|+||+||||.+|++.||+.+|+++.++++|+++|+||||+..+++.++++++++.|+..++..+
T Consensus 81 ~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~----- 155 (638)
T 3j25_A 81 LAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQ----- 155 (638)
T ss_dssp HHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCC-----
T ss_pred HHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccc-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999987654222
Q ss_pred CCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHHhcCCCCCHHHHHHHHHhh
Q 007325 249 EDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKG 328 (608)
Q Consensus 249 ~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l~~~~~~~~el~~~l~~~ 328 (608)
.+++...... ..+. ..++.|.+++.||++|++|+++..++..++...++..
T Consensus 156 ------~~~~~~~~~~-------------~~~~----------~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~ 206 (638)
T 3j25_A 156 ------KVELYPNVCV-------------TNFT----------ESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIR 206 (638)
T ss_dssp ------CCCSCGGGCC-------------CCCC----------CHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHH
T ss_pred ------eeEeeccccc-------------cccc----------hhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhh
Confidence 1222111100 0011 1345788899999999999999999999999999999
Q ss_pred cccCcceeeeeeccCCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccchhccccCCCCCeEEEEEEeeecCCCceEEE
Q 007325 329 TIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTF 408 (608)
Q Consensus 329 ~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~~G~la~ 408 (608)
+..+.++||+|+||++|.||+.|||+|++++|+|.+. +++||+++|||+.+|++.|+++|
T Consensus 207 ~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~p~p~~~--------------------~~~~~~~~Vfk~~~d~~~G~la~ 266 (638)
T 3j25_A 207 FQNCSLFPLYHGSAKSNIGIDNLIEVITNKFYSSTHR--------------------GPSELCGNVFKIEYTKKRQRLAY 266 (638)
T ss_dssp HHHTSCCCCCCCCSTTCCSHHHHHHHHHHSCCCSGGG--------------------SCCCCCBEEBCCCCCSTTCCCCB
T ss_pred hcccccccccccccccCCCchhHhhhhhccccCcccc--------------------hhhhhcceeeeeeeeccCceEEE
Confidence 9999999999999999999999999999999999752 35899999999999999999999
Q ss_pred EEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCeeecCCEEEEcCCCcccccceeccCCCCcccCCCCCCCce
Q 007325 409 VRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERMDFPDPV 488 (608)
Q Consensus 409 ~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~GdtL~~~~~~~~l~~~~~~~Pv 488 (608)
+|||||+|++||.|++...+ ++++.+++.++|+++.++++|.|||||+|.| ..+.+|+|+++...+..+.++.+|.|+
T Consensus 267 ~RV~sG~l~~g~~v~~~~~~-~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~g-~~~~~~~tl~d~~~~~~~~~i~~p~Pv 344 (638)
T 3j25_A 267 IRLYSGVLHLRDSVRVSEKE-KIKVTEMYTSINGELCKIDRAYSGEIVILQN-EFLKLNSVLGDTKLLPQRKKIENPHPL 344 (638)
T ss_dssp CCBSSBCCCSCCCSSSCCCC-CSSBCCCCSSCCCCBSCCCTTBCCCCSCCCS-SSCSSEECSSSSSSGGGCSCCCCCCCC
T ss_pred EEEEcCcccCCCccccccCc-ceeEEeeecccccccccccccccceEEEEec-cccccCceecCCCCcccccCccCCCcc
Confidence 99999999999999877654 5799999999999999999999999999988 568889999998888888899999999
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHHhCCeeEEEEeCCCCcEEEEeeChhhHHHHHHHHHhhcCeEEEEecceEEEEEeee
Q 007325 489 IKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRESIS 568 (608)
Q Consensus 489 ~~~aiep~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~vl~g~GelHLev~~~rL~~~f~vev~~s~p~V~yrETi~ 568 (608)
++++|+|.++.|++||.++|++|++|||+++++++++|||++|+|||||||||+++||+++||+++.+++|+|+|||||+
T Consensus 345 ~~~aiep~~~~d~~kL~~aL~kL~~eDPsl~v~~~~et~e~il~g~GeLHLei~~~rL~~efgvev~~~~P~V~yrEti~ 424 (638)
T 3j25_A 345 LQTTVEPSKPEQREMLLDALLEISDSDPLLRYYVDSTTHEIILSFLGKVQMEVISALLQEKYHVEIELKEPTVIYMERPL 424 (638)
T ss_dssp CCCEEECCSHHHHHHHHHHHHHHHHTCTTCCCCCCSSSSCCCCCCSSHHHHHHHHHHHTTTTCCCCEEECCCCCCCBCCC
T ss_pred ceeeeccCChHHHHHHHHHHHHHhhcCCeeEEEecCCCceEEEccccHHHHHHHHHHHHHHhCCcEEEeCCceeEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEEEEeeecCCCCeeEEEEEEEEecCCCCcceee
Q 007325 569 KVSEVKYVHKKQSGGQGQFADITVRFEPMEVQCQKNIF 606 (608)
Q Consensus 569 ~~~~~~~~~~kq~gg~gq~~~v~~~~ePl~~g~g~~~~ 606 (608)
+.+ +++|++|+||+||||+|++++||+++|+|++|.
T Consensus 425 ~~~--~~~~~~~~~~~~~~~~v~~~~eP~~~~~g~~f~ 460 (638)
T 3j25_A 425 KNA--EYTIHIEVPPNPFWASIGLSVSPLPLGSGMQYE 460 (638)
T ss_dssp SCC--EECCCCCSSSCCCCCCCCEECCCCCSSCCCCCC
T ss_pred ccc--eEEEEEecCCCCceEEEEEEEecccCCCCcEEE
Confidence 886 477999999999999999999999999999985
No 8
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=100.00 E-value=6.3e-81 Score=724.17 Aligned_cols=493 Identities=28% Similarity=0.424 Sum_probs=404.4
Q ss_pred CCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeec-------------
Q 007325 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN------------- 153 (608)
Q Consensus 87 ~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~------------- 153 (608)
.++++||+|+||+|||||||+++|++.++.+...+ ..+++++|+++.|+++|+|+......+.|.
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~--~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~ 93 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAK--AGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKT 93 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC--------------------CCCBCCCEEEEEEECCHHHHHHCSSCC
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCccccc--CCCceeecCchhhhhcceeEeeceeEEEecccccccccccccc
Confidence 45789999999999999999999999888776554 345688999999999999999999988886
Q ss_pred ---CeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCC---------
Q 007325 154 ---KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG--------- 221 (608)
Q Consensus 154 ---~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~--------- 221 (608)
++.++|||||||.+|..++.++++.+|++|+|+|++++++.++..+|+++...++|+++|+||+|+..
T Consensus 94 ~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~~~e~~~~~~e 173 (842)
T 1n0u_A 94 DGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKED 173 (842)
T ss_dssp CSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHHHTSCCCHHH
T ss_pred cCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhccCHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999973
Q ss_pred --CcHHHHHHHHHHhhC-----------CccEEEeccCCCC----------------CCeeeEEecccceeE---EecCc
Q 007325 222 --ANFFRTRDMIVTNLG-----------AKPLVVQLPVGAE----------------DNFKGVVDLVKMKAI---IWSGE 269 (608)
Q Consensus 222 --~~~~~~~~~i~~~l~-----------~~~~~~~~pi~~~----------------~~~~g~idl~~~~~~---~~~~~ 269 (608)
+++.+.++++++.++ ..+.+.++|++.+ ++|...++.+.++.| +|++.
T Consensus 174 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~~~~~~f~~~y~~~~~~~~~~l~~~~~~d~~~~~~ 253 (842)
T 1n0u_A 174 LYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSFFNPK 253 (842)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEEEHHHHHHHHHTTTTSCHHHHHHHTSSSCEEETT
T ss_pred HHHHHHHHHHHHHHHHhhccccccCceeeceEEeeeEEeecccccccchhhhhhhcchhcCCCHHHHHHHHhccccccCC
Confidence 336777888887752 4444556777654 445444555666666 67552
Q ss_pred CCCceeeeecCcH-------hHHHHHHHHHHHHHHHHHhhcHHHHHHHhcC--CCCCHHHHH---HHHHhhcccCcceee
Q 007325 270 ELGAKFAYEDIPA-------NLQKMAQEYRSQMIETIVELDDEAMESYLEG--NEPDEETIK---KLIRKGTIAGSFVPV 337 (608)
Q Consensus 270 ~~g~~~~~~~~~~-------~~~~~~~~~r~~l~e~~~~~dd~l~e~~l~~--~~~~~~el~---~~l~~~~~~~~~~Pv 337 (608)
|..+...++|+ .+.+...+.+.+|+|++++.||++|++||++ ..++.+++. +.+++.+ .+.|+|+
T Consensus 254 --~~~~~~~~i~~~~~~~~~~f~~~~~~~~~~l~e~~~~~d~~~~e~~l~~~g~~l~~~e~~~~~~~l~~~~-~~~~~pv 330 (842)
T 1n0u_A 254 --TKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVV-MRKFLPA 330 (842)
T ss_dssp --TTEEESCSBCTTCCBCCBHHHHHTHHHHHHHHHHHHTTCTTHHHHHHHHTTCCCCGGGGGCCHHHHHHHH-HHHHSBH
T ss_pred --CCeEEEecCCchhhhhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCCCHHHHhhhhHHHHHHH-Hhhccch
Confidence 45566555554 4556778899999999999999999999985 789998888 8888888 7789998
Q ss_pred eeeccCCCCChHHHHHHHHHhCCCCCCCCCCC------CCCCCCccchhccccCCCCCeEEEEEEeeecCCCce-EEEEE
Q 007325 338 LCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMK------GTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGS-LTFVR 410 (608)
Q Consensus 338 ~~~SA~~~~Gi~~Lld~i~~~lP~p~~~~~~~------~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~~G~-la~~R 410 (608)
++.|||+|++++|+|.+++..+ +. .+.......+.|++++|++++|||+..++++|+ ++|+|
T Consensus 331 ----------~~~LLd~i~~~lPsP~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~p~~a~VfK~~~~~~~G~~l~~~R 399 (842)
T 1n0u_A 331 ----------ADALLEMIVLHLPSPVTAQAYRAEQLYEGP-ADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGR 399 (842)
T ss_dssp ----------HHHHHHHHHHHSCCHHHHHHHHHHHHBSSC-TTSHHHHHHHTTCTTSSCEEEEEEEEEBSSTTCEEEEEE
T ss_pred ----------HHHHHHHHHHhCCChhHhcccccccccCCc-ccccccceeeccCCCCCeEEEEEeeeecCCCCceEEEEE
Confidence 6999999999999998643211 11 001112345678999999999999999999995 99999
Q ss_pred EecceeCCCCEE------EeCCCCc---eeecceEEEeecCceeecCeeecCCEEEEcCCCccccc-ceeccCCCCcccC
Q 007325 411 VYAGTLSAGSYV------LNANKGK---KERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITG-ETLCDADHPILLE 480 (608)
Q Consensus 411 V~sG~l~~g~~v------~~~~~~~---~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~G-dtL~~~~~~~~l~ 480 (608)
||||+|++||.| ||.++++ .+||++|+.++|+++++|++|.|||||+|.|++++.+| +|||+...+..++
T Consensus 400 V~sG~l~~g~~v~v~~~~~n~~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGdI~ai~gl~~~~~~t~Tl~~~~~~~~l~ 479 (842)
T 1n0u_A 400 VFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSETAHNMK 479 (842)
T ss_dssp EEESEEETTCEEEEECTTCCSSSCTTEEEEECCEEEEEETTEEEEESEEETTCEEEEESCTTTCCSSEEEESCTTCCCBC
T ss_pred EEeeeecCCCEEEeccccccCCCCcccceEEeeeeEeeccCcccccceeCCCCEEEEEccccceecceeecCCCCccccc
Confidence 999999999999 4455555 68999999999999999999999999999999998654 6999988888899
Q ss_pred CCCCC-CceEEEEEEeCCCCCHHHHHHHHHHHHHhCCeeEEEEeCCCCcEEEEeeChhhHHHHHHHHHhhc-CeEEEEec
Q 007325 481 RMDFP-DPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREF-KVEANVGA 558 (608)
Q Consensus 481 ~~~~~-~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~vl~g~GelHLev~~~rL~~~f-~vev~~s~ 558 (608)
++.++ +|+++++|+|+++.|++||.+||++|++|||+|++++| ||||++|+||||||||||++||+++| |+++.+++
T Consensus 480 ~~~~~~~Pv~~~avep~~~~d~~kl~~~L~kL~~eDp~l~v~~~-etge~il~g~GelHLei~~~rL~~~f~~vev~~~~ 558 (842)
T 1n0u_A 480 VMKFSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLTYMS-ESGEHIVAGTGELHLEICLQDLEHDHAGVPLKISP 558 (842)
T ss_dssp CCCCCCSCCEEEEEEESSGGGHHHHHHHHHHHHHHCTTCEEEEC-TTSCEEEEESSHHHHHHHHHHHHHTTSCSCEEEEC
T ss_pred cCCCCCCceEEEEEEECCHHHHHHHHHHHHHHHHhCCcEEEEEc-CCCCEEEEeccHHHHHHHHHHHHHHhcCCceEecC
Confidence 99988 69999999999999999999999999999999999998 89999999999999999999999999 99999999
Q ss_pred ceEEEEEeeecceeEEEEEeeecCCCCeeEEEEEEEEecCCC
Q 007325 559 PQVNYRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEVQ 600 (608)
Q Consensus 559 p~V~yrETi~~~~~~~~~~~kq~gg~gq~~~v~~~~ePl~~g 600 (608)
|+|+|||||++++++....+ . ++.|.+|++++||||+|
T Consensus 559 P~V~yrETi~~~~~~~~~~~-~---~~~~~~v~~~~ePl~~~ 596 (842)
T 1n0u_A 559 PVVAYRETVESESSQTALSK-S---PNKHNRIYLKAEPIDEE 596 (842)
T ss_dssp CCCCCEEEESSCCSSCEEEE-C---TTSSCEEEEEEEECCHH
T ss_pred cEEEEEEeeccccccceeec-c---CCcceEEEEEEEECcHH
Confidence 99999999999887644333 2 34456899999999974
No 9
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=100.00 E-value=1.9e-78 Score=668.62 Aligned_cols=459 Identities=26% Similarity=0.401 Sum_probs=399.2
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeecc----CCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHE----GTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTP 163 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~----g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTP 163 (608)
+++|||+|+||+|||||||+++|++.+|.+...|.+.. +.+++|+.+.|+++|+|+......+.|+++.++|||||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTP 90 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTP 90 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECC
Confidence 45799999999999999999999999999888877764 46789999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCCcHHHHHHHHHHhhCCccEEEe
Q 007325 164 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQ 243 (608)
Q Consensus 164 G~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ 243 (608)
||.+|..++.++++.+|++|+|+|++++++.++..+|+.+...++|+++|+||+|+..++..+.++++++.++..+.+++
T Consensus 91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~~~~~~l~ei~~~l~~~~~~~~ 170 (528)
T 3tr5_A 91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTRPSIELLDEIESILRIHCAPVT 170 (528)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCEEEESE
T ss_pred CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHHHhhCCCceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHHhcCCCCCHHHHHH
Q 007325 244 LPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKK 323 (608)
Q Consensus 244 ~pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l~~~~~~~~el~~ 323 (608)
+|++.++.|.|++|++.++++.|.+.. +......++++++.+. .+++.+.+. +++|+++.++..++...
T Consensus 171 ~pig~~~~f~gv~dl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~l~~~--------~~~~~e~~~l~~~~~~~ 239 (528)
T 3tr5_A 171 WPIGMGKYFKGIYHLIEDAIYLYQPGK-HERVGESERIEGINNP--ELDKKLGDL--------ASELRNEIELVKGASHP 239 (528)
T ss_dssp EEESCGGGCCEEEETTTTEEEECCTTS-SSSTTCSCEEECTTCH--HHHHHHTHH--------HHHHHHHHHHHHHHSCC
T ss_pred cccccCCceeEEEEeecCEEEEecCCC-CCcccccccccccchH--HHHHHHHHH--------HHHHhhhcchhhhhhhH
Confidence 999999999999999999999997642 3333334445443222 233333333 34444322221111111
Q ss_pred HHHhhcccCcceeeeeeccCCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccchhccccCCCCCeEEEEEEeee--cC
Q 007325 324 LIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMS--DP 401 (608)
Q Consensus 324 ~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~--d~ 401 (608)
..++.+..+.++||||+||++|.||++||++|++++|+|.+...... ...+ .++||+++|||+.. ||
T Consensus 240 ~~~~~~~~~~~~PV~~gSA~~~~GV~~Lld~i~~~~p~p~~~~~~~~----------~~~~-~~~~~~~~VFKi~~~~dp 308 (528)
T 3tr5_A 240 FEREGYLKGELTPIFFGSAINNFGVGELLDAFVKEAPPPQGRETNSR----------LVKP-EEEKFSGFVFKIQANMDP 308 (528)
T ss_dssp CCHHHHHTTSEEEEEECBGGGTBSHHHHHHHHHHHSCCCCCBCBSSS----------CBCT-TSSSCEEEEEEEEECCC-
T ss_pred HHHHHHhcCceeEEEeccccCCccHHHHHHHHHHhCCCCCcccccce----------eeCC-CcccceeEEEEEecccCc
Confidence 22566778999999999999999999999999999999987543211 1112 36899999999985 88
Q ss_pred -CCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCeeecCCEEEEcCCCcccccceeccCCCCcccC
Q 007325 402 -FVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLE 480 (608)
Q Consensus 402 -~~G~la~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~GdtL~~~~~~~~l~ 480 (608)
++|+++|+|||||+|++||.|++.++++.++|++++.++|.+++++++|.|||||++.|++++++|||||+ ..+..++
T Consensus 309 ~~~g~l~~~RV~sG~l~~g~~v~~~~~~~~~rv~~~~~~~~~~~~~v~~a~aGdI~~~~~l~~~~~GDtl~~-~~~~~~~ 387 (528)
T 3tr5_A 309 GHRDRIAFLRIASGQYQKGMKAYHVRLKKEIQINNALTFMAGKRENAEEAWPGDIIGLHNHGTIQIGDTFTQ-GERFKFT 387 (528)
T ss_dssp CCCCEEEEEEEEESCEETTEEEEETTTTEEEEESSCBCCBTTCSSCCSEECTTCEEEEEESSSCCTTCEEES-SCCCCBC
T ss_pred cCCceEEEEEEecCeEcCCCEEEecCCCceEEEeeeEEEeCCCeeECCEECCCCEEEEcCCCCCccCCEEcC-CCCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998 4556778
Q ss_pred CCCCCCceEEEEEEeCCCCCHHHHHHHHHHHHHhCCeeEEEEeCCCCcEEEEeeChhhHHHHHHHHHhhcCeEEEEecce
Q 007325 481 RMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQ 560 (608)
Q Consensus 481 ~~~~~~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~vl~g~GelHLev~~~rL~~~f~vev~~s~p~ 560 (608)
+++++.|+++++|+|+++.|.+||.+||++|++|||+ .+..+++|||++|+|||||||||+++||+++||+++.+++|+
T Consensus 388 ~~~~~~P~~~~~i~~~~~~d~~kl~~aL~~L~~ED~~-~~~~~~~~~~~il~~~G~lhlev~~~rL~~ey~v~v~~~~~~ 466 (528)
T 3tr5_A 388 GIPNFASELFRLVRLKDPLKQKALLKGLTQLSEEGAT-QLFRPLDSNELILGAVGLLQFDVVAYRLENEYNVKCVYESVN 466 (528)
T ss_dssp CCEEECCSEEEEEEESCGGGHHHHHHHHHHHHHTTSC-EEEEETTCCCEEEEESSTHHHHHHHHHHHHHHCCCEEEECCS
T ss_pred CCCCCCCCEEEEEEECChhHHHHHHHHHHHHHhcCCe-EEEEcCCCCCEEEEEEcHHHHHHHHHHHHHHhCcEEEEecCc
Confidence 8888899999999999999999999999999999986 888899999999999999999999999999999999999999
Q ss_pred EEEEEeeecc
Q 007325 561 VNYRESISKV 570 (608)
Q Consensus 561 V~yrETi~~~ 570 (608)
|+|+|+|...
T Consensus 467 v~~~~~i~~~ 476 (528)
T 3tr5_A 467 VVTARWVICD 476 (528)
T ss_dssp CCEEEEEECS
T ss_pred eEEEEEecCC
Confidence 9999999853
No 10
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=100.00 E-value=8.3e-79 Score=672.29 Aligned_cols=459 Identities=26% Similarity=0.414 Sum_probs=371.4
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccC----CccccchhhhhhcceeEeecEEEEeecCeeEEEEeCC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEG----TATMDWMEQEQERGITITSAATTTYWNKHRINIIDTP 163 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g----~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTP 163 (608)
+++++|+|+||+|||||||+++|++..+.+...+.+..+ .+++|+++.|+++|+|+......+.|+++.++|||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 356899999999999999999999877777666665543 5789999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCCcHHHHHHHHHHhhCCccEEEe
Q 007325 164 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQ 243 (608)
Q Consensus 164 G~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ 243 (608)
||.+|..++.++++.+|++|+|+|++++++.++..+|+.+...++|+++|+||+|+..++..++++++++.++..+.+++
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~~~~~~~~i~~~l~~~~~~~~ 170 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELKIGCAPIT 170 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCEEEESE
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccccHHHHHHHHHHHhCCCcccee
Confidence 99999999999999999999999999999999999999999999999999999999998888999999999999999999
Q ss_pred ccCCCCCCeeeEEecccceeEEecCcCCCceeee-ecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHHhcCCCCCHHHHH
Q 007325 244 LPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAY-EDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIK 322 (608)
Q Consensus 244 ~pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l~~~~~~~~el~ 322 (608)
+|++.+..|.|++|++.+.++.|.... |..+.. .++| ++.+. .+.|. .+++++++|+++.++..+++.
T Consensus 171 ~pi~sa~~~~Gv~dl~~~~~~~~~~~~-g~~~~~~~~i~-~~~~~------~l~e~---~~~~~~~~~~e~~~l~~~~~~ 239 (529)
T 2h5e_A 171 WPIGCGKLFKGVYHLYKDETYLYQSGK-GHTIQEVRIVK-GLNNP------DLDAA---VGEDLAQQLRDELELVKGASN 239 (529)
T ss_dssp EEESCGGGCCEEEETTTTEEEECCTTC-CSSCCCCCEEC-CSSCH------HHHHH---HCHHHHHHHHHHHHHHHHHSC
T ss_pred cceecccCcceeeehhhhhHhhhcccC-CCcccccccCC-CCCHH------HHHHh---hCHHHHHHhhcccchhhhhhh
Confidence 999999999999999999999996421 321111 2333 11111 12222 367788888776444444443
Q ss_pred HHHHhhcccCcceeeeeeccCCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccchhccccCCCCCeEEEEEEeee---
Q 007325 323 KLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMS--- 399 (608)
Q Consensus 323 ~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~--- 399 (608)
..+++.+..+.++|||||||++|.||++|||+|++++|+|.++... ...+.++ ++||+++|||+..
T Consensus 240 ~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~~P~P~~~~~~----------~~~~~~~-~~~~~~~vfKi~~~~d 308 (529)
T 2h5e_A 240 EFDKELFLAGEITPVFFGTALGNFGVDHMLDGLVEWAPAPMPRQTD----------TRTVEAS-EDKFTGFVFKIQANMD 308 (529)
T ss_dssp CCCHHHHHTTSEEEEEECBTTTTBSHHHHHHHHHHHSCSSCCEEBS----------SCEECTT-CCSCEEEEEEECSSCC
T ss_pred hhhHHHHHhCceeEEEeeecccCCCHHHHHHHHHHhCCCCCccccc----------ccccCCC-CCCeEEEEEEEeeccC
Confidence 4456677789999999999999999999999999999999864321 0012222 6899999999976
Q ss_pred cCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCeeecCCEEEEcCCCcccccceeccCCCCccc
Q 007325 400 DPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILL 479 (608)
Q Consensus 400 d~~~G~la~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~GdtL~~~~~~~~l 479 (608)
++++|+++|+||+||+|++||.|++.+.++.++|++++.++|.+++++++|.|||||+|.|++++.+|||||+.+ +..+
T Consensus 309 ~~~~G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~~~Gdtl~~~~-~~~~ 387 (529)
T 2h5e_A 309 PKHRDRVAFMRVVSGKYEKGMKLRQVRTAKDVVISDALTFMAGDRSHVEEAYPGDILGLHNHGTIQIGDTFTQGE-MMKF 387 (529)
T ss_dssp SSSSCCCEEEEEEESCEETTCEEEETTTTEEEECSCEECCCC-----CCEECTTCEEEECCSSCCCTTCEEESSC-CCCB
T ss_pred cCCCceEEEEEEecCeEcCCCEEEEeeCCCEEEeceeeEEeCCCceEcceECCCCEEEEeccCCCccCCEeecCC-cccc
Confidence 467899999999999999999999999999999999999999999999999999999999999999999999876 5678
Q ss_pred CCCCCCCceEEEEEEeCCCCCHHHHHHHHHHHHHhCCeeEEEEeCCCCcEEEEeeChhhHHHHHHHHHhhcCeEEEEecc
Q 007325 480 ERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAP 559 (608)
Q Consensus 480 ~~~~~~~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~vl~g~GelHLev~~~rL~~~f~vev~~s~p 559 (608)
++++++.|+++++|+|+++.|.+||.+||++|++||| +++.++++|||++|+|||||||||+++||+++||+++.+++|
T Consensus 388 ~~~~~~~P~~~~~v~~~~~~d~~kl~~~L~~L~~ed~-~~~~~~~~t~~~il~~~Gelhlev~~~rl~~ey~v~v~~~~~ 466 (529)
T 2h5e_A 388 TGIPNFAPELFRRIRLKDPLKQKQLLKGLVQLSEEGA-VQVFRPISNNDLIVGAVGVLQFDVVVARLKSEYNVEAVYESV 466 (529)
T ss_dssp CCCEEECCSEEEEEEESCC---CTHHHHHHHHHHTTS-CEEEEETTSCCEEEEESSTHHHHHHHHHHHHHSSCCEEEECC
T ss_pred CCCCCCCccEEEEEEECChHHHHHHHHHHHHHHhhCC-EEEEEeCCCCcEEEEEECHHHHHHHHHHHHHHhCcEEEEecC
Confidence 8899999999999999999999999999999999998 999999999999999999999999999999999999999999
Q ss_pred eEEEEEeeecc
Q 007325 560 QVNYRESISKV 570 (608)
Q Consensus 560 ~V~yrETi~~~ 570 (608)
+|+|||||...
T Consensus 467 ~v~y~eti~~~ 477 (529)
T 2h5e_A 467 NVATARWVECA 477 (529)
T ss_dssp CCSEEEEEECS
T ss_pred ceeEEEEEcCC
Confidence 99999999754
No 11
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=100.00 E-value=8.3e-65 Score=564.25 Aligned_cols=362 Identities=30% Similarity=0.498 Sum_probs=306.7
Q ss_pred CCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC-----eeEEEEe
Q 007325 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK-----HRINIID 161 (608)
Q Consensus 87 ~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~-----~~i~liD 161 (608)
.+++|||+|+||+|||||||+++|++.+|.+...+ .+++++|+++.|++||+|+......+.|.. +.++|||
T Consensus 3 ~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~---~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliD 79 (600)
T 2ywe_A 3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISERE---KREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLID 79 (600)
T ss_dssp GGGEEEEEEECC--CCHHHHHHHHHHHHTC--------------------------CCCCSEEEEEECTTSCEEEEEEEC
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHhccCCccccc---ccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEE
Confidence 45789999999999999999999998888765432 256889999999999999999999988853 7899999
Q ss_pred CCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCCcHHHHHHHHHHhhCCccEE
Q 007325 162 TPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLV 241 (608)
Q Consensus 162 TPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~ 241 (608)
||||.||..++.++++.+|++|+|||+++|++.|+...|..+...++|+++|+||+|+..++.+++.+++++.++..
T Consensus 80 TPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~~--- 156 (600)
T 2ywe_A 80 TPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADVDRVKKQIEEVLGLD--- 156 (600)
T ss_dssp CCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHTSCCC---
T ss_pred CCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccCHHHHHHHHHHhhCCC---
Confidence 99999999999999999999999999999999999999999999999999999999999887776666666554321
Q ss_pred EeccCCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHHhcCCCCCHHHH
Q 007325 242 VQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETI 321 (608)
Q Consensus 242 ~~~pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l~~~~~~~~el 321 (608)
T Consensus 157 -------------------------------------------------------------------------------- 156 (600)
T 2ywe_A 157 -------------------------------------------------------------------------------- 156 (600)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhcccCcceeeeeeccCCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccchhccccCCCCCeEEEEEEeeecC
Q 007325 322 KKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDP 401 (608)
Q Consensus 322 ~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~ 401 (608)
..+++++||++|.|+++|+++|.+++|+|.. ++++|+.++||+++.|+
T Consensus 157 ------------~~~vi~vSAktg~GI~~Lle~I~~~lp~p~~--------------------~~~~pl~~lV~~~~~d~ 204 (600)
T 2ywe_A 157 ------------PEEAILASAKEGIGIEEILEAIVNRIPPPKG--------------------DPQKPLKALIFDSYYDP 204 (600)
T ss_dssp ------------GGGCEECBTTTTBSHHHHHHHHHHHSCCCCC--------------------CTTSCCEEEEEEEEEET
T ss_pred ------------cccEEEEEeecCCCchHHHHHHHHhcccccc--------------------cccCCcceeEEEEeecc
Confidence 0137889999999999999999999999864 24789999999999999
Q ss_pred CCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCeeecCCEEEEc-C---CCcccccceeccCCCC-
Q 007325 402 FVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALA-G---LKDTITGETLCDADHP- 476 (608)
Q Consensus 402 ~~G~la~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~-g---l~~~~~GdtL~~~~~~- 476 (608)
+.|.++++||++|++++||.|++.++++.+++++++.+.+ ++.+++++.||||+++. | ++++.+||||+..+++
T Consensus 205 ~~G~v~~~rV~sG~l~~Gd~I~~~~~~~~~~v~~i~~~~~-~~~~v~~~~aGdi~~v~~gi~~~~~~~~GDtl~~~~~~~ 283 (600)
T 2ywe_A 205 YRGAVAFVRIFDGEVKPGDKIMLMSTGKEYEVTEVGAQTP-KMTKFDKLSAGDVGYIAASIKDVRDIRIGDTITHAKNPT 283 (600)
T ss_dssp TTEEEEEEEEEESEECTTCEEEETTTTEEEECCEEEEESS-SEEEESCEETTCEEEEESSCCCTTSSCTTCEEEESSSCC
T ss_pred cceEEEEEEEEeCEEecCCEEEeccccceEeeecccccCC-CceECCEEecCceeeeeccccchhhccCCCEEEeCCCcc
Confidence 9999999999999999999999999999999999998876 47899999999999884 4 5678999999988776
Q ss_pred -cccCCCCCCCceEEEEEEeCCCCCHHHHHHHHHHHHHhCCeeEEEEeCCCCcEEEEe-----eChhhHHHHHHHHHhhc
Q 007325 477 -ILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEG-----MGELHLEIIVDRLKREF 550 (608)
Q Consensus 477 -~~l~~~~~~~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~vl~g-----~GelHLev~~~rL~~~f 550 (608)
.+++++.+++|+++++|+|.++.|.++|.++|++|.+|||+|.++ +||+|.+++| ||||||||+++||+++|
T Consensus 284 ~~~l~~~~~~~P~v~~~i~p~~~~d~~~l~~aL~kL~~eD~sl~~~--~et~~~l~~g~~~~~~G~lHlei~~erl~re~ 361 (600)
T 2ywe_A 284 KEPVPGFQPAKPMVYAGIYPAEDTTYEELRDALEKYAINDAAIVYE--PESSPALGMGFRVGFLGLLHMEIVQERLEREY 361 (600)
T ss_dssp SSCCSCCCCCCCCEEEEEEECTTCCHHHHHHHHHHHHTTCSSCEEE--EEEETTTEEEEEEEESSHHHHHHHHHHHHHHS
T ss_pred ccccCCCCCCCcEEEEEeeccccccHHHHHHHHHHHhhhCCEEEEE--ECCccccccceEEEeccHHHHHHHHHHHHhhc
Confidence 478889999999999999999999999999999999999999998 4789877777 99999999999999999
Q ss_pred CeEEEEecceEEEEEeeec
Q 007325 551 KVEANVGAPQVNYRESISK 569 (608)
Q Consensus 551 ~vev~~s~p~V~yrETi~~ 569 (608)
|+++.+++|+|+|||||++
T Consensus 362 ~~~v~~~~P~V~yreti~~ 380 (600)
T 2ywe_A 362 GVKIITTAPNVIYRVKKKF 380 (600)
T ss_dssp CCCEEECCCEECEEEEETT
T ss_pred CceEEEEeeeEEEEEEecC
Confidence 9999999999999999984
No 12
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=100.00 E-value=6.6e-64 Score=558.20 Aligned_cols=362 Identities=30% Similarity=0.432 Sum_probs=302.2
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeec-----CeeEEEEeC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-----KHRINIIDT 162 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~-----~~~i~liDT 162 (608)
+++|||+|+||+|||||||+++|++.+|.+.... .+.+++|+++.|+++|+|+......+.|. ++.++||||
T Consensus 2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~---~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDT 78 (599)
T 3cb4_D 2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDRE---MEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDT 78 (599)
T ss_dssp TTEEEEEEECCC----CCHHHHHHHHTTC-----------------------------CEEEEEEECTTSCEEEEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCccccc---ccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEEC
Confidence 4689999999999999999999998888765431 25688999999999999999999999886 389999999
Q ss_pred CCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCCcHHHHHHHHHHhhCCccEEE
Q 007325 163 PGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVV 242 (608)
Q Consensus 163 PG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~ 242 (608)
|||.||..++.++++.+|++|+|||+++|++.|+...|..+...++|+++|+||+|+..++.+++.+++.+.++..
T Consensus 79 PGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~---- 154 (599)
T 3cb4_D 79 PGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGID---- 154 (599)
T ss_dssp CCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCC----
T ss_pred CCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccccHHHHHHHHHHHhCCC----
Confidence 9999999999999999999999999999999999999999999999999999999999887766666666554321
Q ss_pred eccCCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHHhcCCCCCHHHHH
Q 007325 243 QLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIK 322 (608)
Q Consensus 243 ~~pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l~~~~~~~~el~ 322 (608)
T Consensus 155 -------------------------------------------------------------------------------- 154 (599)
T 3cb4_D 155 -------------------------------------------------------------------------------- 154 (599)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhcccCcceeeeeeccCCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccchhccccCCCCCeEEEEEEeeecCC
Q 007325 323 KLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPF 402 (608)
Q Consensus 323 ~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~ 402 (608)
..+++++||++|.|+++|++.|.+++|+|.. ++++|+.++||+++.|++
T Consensus 155 -----------~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~~--------------------~~~~p~~alI~d~~~d~~ 203 (599)
T 3cb4_D 155 -----------ATDAVRCSAKTGVGVQDVLERLVRDIPPPEG--------------------DPEGPLQALIIDSWFDNY 203 (599)
T ss_dssp -----------CTTCEEECTTTCTTHHHHHHHHHHHSCCCCC--------------------CTTSCCEEEEEEEEEETT
T ss_pred -----------cceEEEeecccCCCchhHHHHHhhcCCCccc--------------------cccCCceeeeeecccccc
Confidence 0137889999999999999999999999864 247899999999999999
Q ss_pred CceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCeeecCCEEEEc-C---CCcccccceeccCCCC--
Q 007325 403 VGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALA-G---LKDTITGETLCDADHP-- 476 (608)
Q Consensus 403 ~G~la~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~-g---l~~~~~GdtL~~~~~~-- 476 (608)
+|+++++||++|+|++||.|.+.++++.+++++++.+.+. ..+++++.||||+++. | ++++.+||||++.+.+
T Consensus 204 ~G~v~~~rV~sG~l~~Gd~v~~~~~~~~~~v~~i~~~~~~-~~~~~~~~aGdi~~~~~gi~~~~~~~~GDtl~~~~~~~~ 282 (599)
T 3cb4_D 204 LGVVSLIRIKNGTLRKGDKVKVMSTGQTYNADRLGIFTPK-QVDRTELKCGEVGWLVCAIKDIHGAPVGDTLTLARNPAE 282 (599)
T ss_dssp TEEEEEEEEEESCEESSCEEEETTTCCEEECCEEEEESSS-EEECSEECTTCEEEEECCCSSGGGSCTTCEEEESSSCCS
T ss_pred ccEEEEEEEEeCEEecCCEEEeccccceeEEeeeeeccCC-ceECCEEcCCCeeEeeccccccccCccCCEeeecCCccc
Confidence 9999999999999999999999999999999999988865 7899999999999883 4 4578999999988776
Q ss_pred cccCCCCCCCceEEEEEEeCCCCCHHHHHHHHHHHHHhCCeeEEEEeCCCCcEEEEe-----eChhhHHHHHHHHHhhcC
Q 007325 477 ILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEG-----MGELHLEIIVDRLKREFK 551 (608)
Q Consensus 477 ~~l~~~~~~~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~vl~g-----~GelHLev~~~rL~~~f~ 551 (608)
.+++++..++|+++++++|.+..|.++|.++|++|.++||+|.++ +||+|+++.| ||||||||+++||+++||
T Consensus 283 ~~l~~~~~~~P~v~~~i~p~~~~d~~~l~~aL~kL~~eD~sl~~~--~et~~~l~~gfr~g~lG~lhlei~~erl~~e~~ 360 (599)
T 3cb4_D 283 KALPGFKKVKPQVYAGLFPVSSDDYEAFRDALGKLSLNDASLFYE--PESSSALGFGFRCGFLGLLHMEIIQERLEREYD 360 (599)
T ss_dssp SCCTTCCCCCCCEEEEEEESSGGGHHHHHHHHHHHHTTCSSCEEE--EEEETTTEEEEEEEESSHHHHHHHHHHHHHTSC
T ss_pred cccccccCCCcceEEEEEecCccCHHHHHHHHHHHHhhCcEEEEE--eccccccccceEEEeccHHHHHHHHHHHHHHcC
Confidence 678888999999999999999999999999999999999999998 5789887777 999999999999999999
Q ss_pred eEEEEecceEEEEEeeecc
Q 007325 552 VEANVGAPQVNYRESISKV 570 (608)
Q Consensus 552 vev~~s~p~V~yrETi~~~ 570 (608)
+++.+++|+|+|||||++.
T Consensus 361 ~~~~~~~P~V~yreti~~g 379 (599)
T 3cb4_D 361 LDLITTAPTVVYEVETTSR 379 (599)
T ss_dssp CCEEECCCEECEEEEESSS
T ss_pred ceEEEEeeeEEEEEEecCC
Confidence 9999999999999999864
No 13
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=100.00 E-value=1.5e-39 Score=362.75 Aligned_cols=332 Identities=22% Similarity=0.256 Sum_probs=254.9
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEee----------------
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW---------------- 152 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~---------------- 152 (608)
+.++|+|+||+|||||||+++|+......... +|+|.+.....+.+
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~------------------ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v 65 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREA------------------GGITQHIGATEIPMDVIEGICGDFLKKFSI 65 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----------------------CCCBTTEEEEEHHHHHHHSCGGGGGCGG
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccC------------------CceecccCeEEEeechhhhhcccccccccc
Confidence 35799999999999999999997443211111 23344333333322
Q ss_pred --cCeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCCcHHHHHHH
Q 007325 153 --NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDM 230 (608)
Q Consensus 153 --~~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~ 230 (608)
....++|||||||.+|..++.++++.+|++|+|+|+++|+++|+.+.|+.+...++|+++|+||+|+.....
T Consensus 66 ~~~~~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~------ 139 (594)
T 1g7s_A 66 RETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWR------ 139 (594)
T ss_dssp GGTCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCC------
T ss_pred ccccCCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccc------
Confidence 123699999999999999999999999999999999999999999999999999999999999999864210
Q ss_pred HHHhhCCccEEEeccCCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHH
Q 007325 231 IVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESY 310 (608)
Q Consensus 231 i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~ 310 (608)
.. .+ .++++.+.......++.+.+.+.+.++++++.+
T Consensus 140 -------------------------------------~~-~~-----~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~g 176 (594)
T 1g7s_A 140 -------------------------------------VH-EG-----RPFMETFSKQDIQVQQKLDTKVYELVGKLHEEG 176 (594)
T ss_dssp -------------------------------------CC-TT-----CCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred -------------------------------------cc-cC-----CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcC
Confidence 00 00 012222222234556677788888888888887
Q ss_pred hcCCCCCHHHHHHHHHhhcccCcceeeeeeccCCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccchhccccCCCCCe
Q 007325 311 LEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPF 390 (608)
Q Consensus 311 l~~~~~~~~el~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 390 (608)
++.+.. . .....+..+|++++||++|.|+++|+++|..++|+|.+. ...+++++|+
T Consensus 177 l~~e~~------~---~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~~~~---------------~l~~~~~~p~ 232 (594)
T 1g7s_A 177 FESERF------D---RVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLRE---------------QLKIEEDSPA 232 (594)
T ss_dssp CEEEEG------G---GCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCSG---------------GGEECTTSBC
T ss_pred cchHHH------H---HHHhccCcceEEEEeccCCCCchhHHHHHHhhccccchh---------------hhccccCCCc
Confidence 763211 0 111125678999999999999999999999998866531 1234567999
Q ss_pred EEEEEEeeecCCCceEEEEEEecceeCCCCEEEeCCCCcee--ecceEEEee--------cCceeecCeee--cCCEEEE
Q 007325 391 AGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKE--RIGRLLEMH--------ANSREDVKVAL--AGDIIAL 458 (608)
Q Consensus 391 ~~~V~K~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~~~--ki~~i~~~~--------g~~~~~v~~a~--aGdIv~i 458 (608)
.++||+++.+++.|.++++||++|+|++||.|++.+.+..+ +|.+|+.+. +....++++|. +|++|++
T Consensus 233 ~~~V~~~~~d~g~G~v~~~rV~~G~Lk~Gd~v~~~~~~~~~~~rV~~i~~~~~~~elr~~~~~~~~v~ea~~~aG~~v~~ 312 (594)
T 1g7s_A 233 RGTILEVKEETGLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGIKIVA 312 (594)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEESEEETTCEEEEEBSSSEEEEECCEEEEECCCC----CCCSEEECSEEESSEEEEEEC
T ss_pred eeEEEEEEEeCCcEEEEEEEEeeCEEeeCCEEEECCCCCceeEEEeEEEeccccchhhhccCCceEccEEcCCCCcEEEE
Confidence 99999999999999999999999999999999998777644 999999873 56788999998 9999999
Q ss_pred cCCCcccccceeccCCCCc--------ccCCCCCCCceEEEEEEeCCCCCHHHHHHHHHHH
Q 007325 459 AGLKDTITGETLCDADHPI--------LLERMDFPDPVIKVAIEPKTKADIDKMANGLIKL 511 (608)
Q Consensus 459 ~gl~~~~~GdtL~~~~~~~--------~l~~~~~~~Pv~~~aiep~~~~d~~kL~~aL~~L 511 (608)
.||+++.+||||+...++. .+..+.+..+.+.+.|.+...+..+.|.++|+++
T Consensus 313 ~~l~~~~~Gd~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkad~~gs~eal~~~l~~~ 373 (594)
T 1g7s_A 313 PGIDDVMAGSPLRVVTDPEKVREEILSEIEDIKIDTDEAGVVVKADTLGSLEAVVKILRDM 373 (594)
T ss_dssp SSCTTBCTTCEEEECSSHHHHHHHHHHHHHTTSCBCSSSCCEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCCCCCCEEEecCCHHHHHHHHHHHHHhcccccccccEEEEeCCCCCHHHHHHHHHhC
Confidence 9999999999999775441 1233344567788999999999999999999997
No 14
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=100.00 E-value=2.9e-35 Score=318.92 Aligned_cols=278 Identities=20% Similarity=0.278 Sum_probs=217.7
Q ss_pred CCCCceeEEEEcCCCCchHHHHHHHHHhhCCcccce------------e-eccCCccccchhhhhhcceeEeecEEEEee
Q 007325 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIG------------E-VHEGTATMDWMEQEQERGITITSAATTTYW 152 (608)
Q Consensus 86 ~~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g------------~-~~~g~~~~d~~~~e~~~giTi~~~~~~~~~ 152 (608)
+.+...||+++||+|+|||||+++|++.++.+.... . -...+.++|..+.|+++|+|++.....+.+
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~ 92 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET 92 (439)
T ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence 345568999999999999999999998887664422 0 011235789999999999999999999999
Q ss_pred cCeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCc-------hhHHHHHHHHHhcCCC-EEEEEeCCCcCCCcH
Q 007325 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVE-------PQSETVWRQADKYGVP-RICFVNKMDRLGANF 224 (608)
Q Consensus 153 ~~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~-------~~t~~~~~~~~~~~~p-~ivviNK~D~~~~~~ 224 (608)
+++.++|||||||.+|...+..+++.+|++|+|||+.+|.. .|+++++..+...++| +++|+||+|+...++
T Consensus 93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~ 172 (439)
T 3j2k_7 93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNW 172 (439)
T ss_pred CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccch
Confidence 99999999999999999999999999999999999999876 7999999999999999 889999999865432
Q ss_pred HH-HHHHHHHhhCCccEEEeccCCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhc
Q 007325 225 FR-TRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELD 303 (608)
Q Consensus 225 ~~-~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~d 303 (608)
.+ ..+++.+
T Consensus 173 ~~~~~~~i~~---------------------------------------------------------------------- 182 (439)
T 3j2k_7 173 SNERYEECKE---------------------------------------------------------------------- 182 (439)
T ss_pred HHHHHHHHHH----------------------------------------------------------------------
Confidence 11 1111110
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHhh-cccCcceeeeeeccCCCCChHH------------HHHHHHHhCCCCCCCCCCCC
Q 007325 304 DEAMESYLEGNEPDEETIKKLIRKG-TIAGSFVPVLCGSAFKNKGVQP------------LLDAVVDYLPSPLDLPAMKG 370 (608)
Q Consensus 304 d~l~e~~l~~~~~~~~el~~~l~~~-~~~~~~~Pv~~~SA~~~~Gi~~------------Lld~i~~~lP~p~~~~~~~~ 370 (608)
++...+.+. ......+|++++||++|.|+.+ |++.| +.+|.|..
T Consensus 183 ----------------~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~~~~w~~g~~L~~~l-~~i~~~~~------ 239 (439)
T 3j2k_7 183 ----------------KLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSDFCPWYIGLPFIPYL-DNLPNFNR------ 239 (439)
T ss_pred ----------------HHHHHHHHhcccccCCeeEEEeeccCCcccccccccccccCchHHHHHH-HhCCCCcc------
Confidence 000111100 0011246899999999999998 44444 44665532
Q ss_pred CCCCCccchhccccCCCCCeEEEEEEeeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCee
Q 007325 371 TDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVA 450 (608)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a 450 (608)
..+.|+.+.|..++. +.|+++.|||.+|+|++||.|...+.+...+|.+|.. ...++++|
T Consensus 240 --------------~~~~p~r~~v~~~~~--~~G~v~~G~v~~G~l~~Gd~v~~~p~~~~~~V~~i~~----~~~~~~~a 299 (439)
T 3j2k_7 240 --------------SVDGPIRLPIVDKYK--DMGTVVLGKLESGSIFKGQQLVMMPNKHNVEVLGILS----DDTETDFV 299 (439)
T ss_pred --------------CCCCCeEEEEEEEEc--CCCeEEEEEEEeeEEecCCEEEEccCCceEEEEEEEE----CCeEcCEe
Confidence 236899999998875 4699999999999999999999999998889999864 34789999
Q ss_pred ecCCEEE--EcCCC--cccccceeccCCCC
Q 007325 451 LAGDIIA--LAGLK--DTITGETLCDADHP 476 (608)
Q Consensus 451 ~aGdIv~--i~gl~--~~~~GdtL~~~~~~ 476 (608)
.|||+|+ +.|++ ++..||+|++++.+
T Consensus 300 ~aG~~v~~~l~gi~~~~i~rG~vl~~~~~~ 329 (439)
T 3j2k_7 300 APGENLKIRLKGIEEEEILPGFILCDPSNL 329 (439)
T ss_pred cCCCcceEEEeccchhhcCCcEEecCCCCC
Confidence 9999999 56665 57889999987654
No 15
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=100.00 E-value=9e-36 Score=320.25 Aligned_cols=272 Identities=26% Similarity=0.410 Sum_probs=215.9
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCccccee--eccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGE--VHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~--~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 165 (608)
+...+|+++||+|+|||||+++|+.... ..|. .....+.+|..+.|+++|+|++.....+.+++..++|||||||
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~---~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~ 85 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAA---AENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGH 85 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHH---HSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCS
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhh---hcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCCh
Confidence 3457999999999999999999985311 1110 1112235788899999999999988888888899999999999
Q ss_pred CCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCC-EEEEEeCCCcCCCcHHHHHHHHHHhhCCccEEEec
Q 007325 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQL 244 (608)
Q Consensus 166 ~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p-~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~ 244 (608)
.+|...+..+++.+|++|+|+|++++...|+.++|..+...++| +++|+||+|+.... +.++.+.+
T Consensus 86 ~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~--~~~~~~~~----------- 152 (405)
T 2c78_A 86 ADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDP--ELLDLVEM----------- 152 (405)
T ss_dssp GGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCH--HHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcH--HHHHHHHH-----------
Confidence 99999999999999999999999999999999999999999999 78999999987421 01111100
Q ss_pred cCCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHHhcCCCCCHHHHHHH
Q 007325 245 PVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKL 324 (608)
Q Consensus 245 pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l~~~~~~~~el~~~ 324 (608)
++.+.
T Consensus 153 ---------------------------------------------------------------------------~~~~~ 157 (405)
T 2c78_A 153 ---------------------------------------------------------------------------EVRDL 157 (405)
T ss_dssp ---------------------------------------------------------------------------HHHHH
T ss_pred ---------------------------------------------------------------------------HHHHH
Confidence 01111
Q ss_pred HHhhcccCcceeeeeeccCCCCC------------------hHHHHHHHHHhCCCCCCCCCCCCCCCCCccchhccccCC
Q 007325 325 IRKGTIAGSFVPVLCGSAFKNKG------------------VQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASD 386 (608)
Q Consensus 325 l~~~~~~~~~~Pv~~~SA~~~~G------------------i~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~ 386 (608)
+.........+|++++||++|.| +++|+++|.+++|.|.. +.
T Consensus 158 l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p~~--------------------~~ 217 (405)
T 2c78_A 158 LNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVR--------------------DV 217 (405)
T ss_dssp HHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCCCC--------------------CC
T ss_pred HHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCCCC--------------------CC
Confidence 11111111236889999999987 89999999999998754 13
Q ss_pred CCCeEEEEEEeeecCCCceEEEEEEecceeCCCCEEEeCCCC---ceeecceEEEeecCceeecCeeecCCEEEEc--CC
Q 007325 387 DEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKG---KKERIGRLLEMHANSREDVKVALAGDIIALA--GL 461 (608)
Q Consensus 387 ~~p~~~~V~K~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~---~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~--gl 461 (608)
++|+.+.|..++.++++|.++++||++|+|++||.|.+.+.+ ...+|.+|... ..++++|.|||+|++. |+
T Consensus 218 ~~p~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~~~~~~~~~~~V~~i~~~----~~~~~~a~aG~~v~~~l~g~ 293 (405)
T 2c78_A 218 DKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMH----RKTLQEGIAGDNVGVLLRGV 293 (405)
T ss_dssp SSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEESSSSSCEEEEEEEEEET----TEEESEEETTCEEEEEESSC
T ss_pred CCCcEEEEEEEEEcCCCceEEEEEEecccccCCCEEEEeCCCCCeeeEEEEEEEEC----CcccCEEcCCCEEEEEECCC
Confidence 689999999999999999999999999999999999987766 57788887543 3689999999999884 54
Q ss_pred --CcccccceeccCC
Q 007325 462 --KDTITGETLCDAD 474 (608)
Q Consensus 462 --~~~~~GdtL~~~~ 474 (608)
+++..||+|++++
T Consensus 294 ~~~~i~~G~~l~~~~ 308 (405)
T 2c78_A 294 SREEVERGQVLAKPG 308 (405)
T ss_dssp CTTTCCTTCEEESTT
T ss_pred cHhhcCceEEEEcCC
Confidence 6789999999875
No 16
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=100.00 E-value=1e-35 Score=318.83 Aligned_cols=270 Identities=26% Similarity=0.341 Sum_probs=212.9
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCccccee-eccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCc
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGE-VHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~-~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 168 (608)
..+|+++||+|+|||||+++|+..... .|. .+...+.+|..+.|+++|+|++.....+.++++.++|||||||.+|
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~---~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f 79 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAE---GGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADY 79 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHH---TTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhh---cCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHH
Confidence 368999999999999999999854211 111 1112235788889999999999988888888899999999999999
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCC-EEEEEeCCCcCCCcHHHHHHHHHHhhCCccEEEeccCC
Q 007325 169 TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVG 247 (608)
Q Consensus 169 ~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p-~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~pi~ 247 (608)
...+..+++.+|++|+|||++++...|+.++|..+...++| +++|+||+|+.... +.++.+.
T Consensus 80 ~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~--~~~~~~~--------------- 142 (397)
T 1d2e_A 80 VKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDS--EMVELVE--------------- 142 (397)
T ss_dssp HHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCH--HHHHHHH---------------
T ss_pred HHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCH--HHHHHHH---------------
Confidence 99999999999999999999999999999999999999999 57899999986421 1111110
Q ss_pred CCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHHhcCCCCCHHHHHHHHHh
Q 007325 248 AEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRK 327 (608)
Q Consensus 248 ~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l~~~~~~~~el~~~l~~ 327 (608)
+++.+.+..
T Consensus 143 -----------------------------------------------------------------------~~~~~~l~~ 151 (397)
T 1d2e_A 143 -----------------------------------------------------------------------LEIRELLTE 151 (397)
T ss_dssp -----------------------------------------------------------------------HHHHHHHHH
T ss_pred -----------------------------------------------------------------------HHHHHHHHH
Confidence 011111111
Q ss_pred hcccCcceeeeeeccCCCC---------C-hHHHHHHHHHhCCCCCCCCCCCCCCCCCccchhccccCCCCCeEEEEEEe
Q 007325 328 GTIAGSFVPVLCGSAFKNK---------G-VQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKI 397 (608)
Q Consensus 328 ~~~~~~~~Pv~~~SA~~~~---------G-i~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~ 397 (608)
.-.....+|++++||++|. | +++|+++|.+++|.|.. +.++|+.+.|+++
T Consensus 152 ~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p~~--------------------~~~~p~~~~v~~v 211 (397)
T 1d2e_A 152 FGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPTR--------------------DLEKPFLLPVESV 211 (397)
T ss_dssp TTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCCCC--------------------CTTSCCEEECCEE
T ss_pred cCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCCCC--------------------CCCCcEEEEEEEE
Confidence 1111223689999999976 4 89999999999998854 2368999999999
Q ss_pred eecCCCceEEEEEEecceeCCCCEEEeCCCC--ceeecceEEEeecCceeecCeeecCCEEEEc--CC--Ccccccceec
Q 007325 398 MSDPFVGSLTFVRVYAGTLSAGSYVLNANKG--KKERIGRLLEMHANSREDVKVALAGDIIALA--GL--KDTITGETLC 471 (608)
Q Consensus 398 ~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~--~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~--gl--~~~~~GdtL~ 471 (608)
+.++++|.++++||++|+|++||.|.+.+.+ ...+|.+|... ..++++|.|||+|++. |+ +++..||+|+
T Consensus 212 ~~~~~~G~v~~g~v~~G~l~~gd~v~~~~~~~~~~~~V~~i~~~----~~~~~~a~aG~~v~~~l~~i~~~~i~~G~~l~ 287 (397)
T 1d2e_A 212 YSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEMF----HKSLDRAEAGDNLGALVRGLKREDLRRGLVMA 287 (397)
T ss_dssp EEETTTEEEEEEECCBSEEETTCEEEEEETTEEEEEEEEEEEET----TEEESEEETTCEEEEEESSCCGGGCCTTCEEE
T ss_pred EEeCCceEEEEEEEeeceEeCCCEEEEeCCCCCeEEEEEEEEEC----CcccCEecCCCceEEEecccchhccCceeEEe
Confidence 9999999999999999999999999876654 67788887543 3689999999999884 55 5689999999
Q ss_pred cCC
Q 007325 472 DAD 474 (608)
Q Consensus 472 ~~~ 474 (608)
+++
T Consensus 288 ~~~ 290 (397)
T 1d2e_A 288 KPG 290 (397)
T ss_dssp STT
T ss_pred CCC
Confidence 865
No 17
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=100.00 E-value=1.9e-35 Score=320.28 Aligned_cols=278 Identities=26% Similarity=0.316 Sum_probs=206.0
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccce--e-----eccC------CccccchhhhhhcceeEeecEEEEeecC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIG--E-----VHEG------TATMDWMEQEQERGITITSAATTTYWNK 154 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g--~-----~~~g------~~~~d~~~~e~~~giTi~~~~~~~~~~~ 154 (608)
+..++|+++||+|+|||||+++|++.++.+.... . ...| ++++|+.+.|+++|+|++.....+.+.+
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 3468999999999999999999998766554221 0 0111 1468999999999999999999999999
Q ss_pred eeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCC-------CchhHHHHHHHHHhcCCC-EEEEEeCCCcCCCcHH-
Q 007325 155 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG-------VEPQSETVWRQADKYGVP-RICFVNKMDRLGANFF- 225 (608)
Q Consensus 155 ~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g-------~~~~t~~~~~~~~~~~~p-~ivviNK~D~~~~~~~- 225 (608)
+.++|||||||.+|...+..+++.+|++|+|||++++ +..|+++++..+...++| +++|+||+|+...++.
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~ 163 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDE 163 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCH
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccH
Confidence 9999999999999999999999999999999999998 888999999999988985 7899999999764310
Q ss_pred HHHHHHHHhhCCccEEEeccCCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHH
Q 007325 226 RTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDE 305 (608)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~ 305 (608)
+.++.+.
T Consensus 164 ~~~~~~~------------------------------------------------------------------------- 170 (435)
T 1jny_A 164 KRYKEIV------------------------------------------------------------------------- 170 (435)
T ss_dssp HHHHHHH-------------------------------------------------------------------------
T ss_pred HHHHHHH-------------------------------------------------------------------------
Confidence 0111110
Q ss_pred HHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeeccCCCCChH------------HHHHHHHHhCCCCCCCCCCCCCCC
Q 007325 306 AMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQ------------PLLDAVVDYLPSPLDLPAMKGTDP 373 (608)
Q Consensus 306 l~e~~l~~~~~~~~el~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~------------~Lld~i~~~lP~p~~~~~~~~~~~ 373 (608)
+++.+.+.........+|++.+||++|.|+. .|+++|.. +|.|..
T Consensus 171 -------------~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~~~~~~~g~~Ll~~l~~-~~~p~~--------- 227 (435)
T 1jny_A 171 -------------DQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSENMKWYNGPTLEEYLDQ-LELPPK--------- 227 (435)
T ss_dssp -------------HHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCSSCTTCCSCCHHHHHTT-CCCCCC---------
T ss_pred -------------HHHHHHHHHcCCCcCCceEEEeecccCccccccccccccccchhHHHHHhc-cCCCCC---------
Confidence 0111111111111113688999999999986 68888755 454542
Q ss_pred CCccchhccccCCCCCeEEEEEEeeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCeeecC
Q 007325 374 ENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAG 453 (608)
Q Consensus 374 ~~~~~~~~~~~~~~~p~~~~V~K~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aG 453 (608)
..+.|+.+.|..++..++.|+++++||++|+|++||.|++.+.+...+|++|... ..++++|.||
T Consensus 228 -----------~~~~~~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~----~~~~~~a~aG 292 (435)
T 1jny_A 228 -----------PVDKPLRIPIQDVYSISGVGTVPVGRVESGVLKVGDKIVFMPAGKVGEVRSIETH----HTKMDKAEPG 292 (435)
T ss_dssp -----------GGGSCCBEEEEEEEEETTTEEEEEEECCBSCEETTCEEEEETTTEEEEEEEEEET----TEEESEECTT
T ss_pred -----------CCCCCeEEEEEEEEEeCCCcEEEEEEEecCeEEcCCEEEECCceeEEEEEEEEEC----CcEEeEEcCC
Confidence 1246788888888888899999999999999999999999998999999999543 4789999999
Q ss_pred CEEEEc--C--CCcccccceeccCCCC
Q 007325 454 DIIALA--G--LKDTITGETLCDADHP 476 (608)
Q Consensus 454 dIv~i~--g--l~~~~~GdtL~~~~~~ 476 (608)
|+|++. | .+++.+||+|++++.+
T Consensus 293 ~~v~~~l~g~~~~~i~~Gd~l~~~~~~ 319 (435)
T 1jny_A 293 DNIGFNVRGVEKKDIKRGDVVGHPNNP 319 (435)
T ss_dssp CEEEEEEESSCGGGCCTTCEEECTTSC
T ss_pred CEEEEEEecCCHHHcCCccEecCCCCC
Confidence 999983 4 4578999999987544
No 18
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.6e-34 Score=323.32 Aligned_cols=276 Identities=21% Similarity=0.247 Sum_probs=184.0
Q ss_pred CCCCceeEEEEcCCCCchHHHHHHHHHhhCCcccce-------ee------ccCCccccchhhhhhcceeEeecEEEEee
Q 007325 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIG-------EV------HEGTATMDWMEQEQERGITITSAATTTYW 152 (608)
Q Consensus 86 ~~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g-------~~------~~g~~~~d~~~~e~~~giTi~~~~~~~~~ 152 (608)
..+.+++|+|+||+|+|||||+++|++.++.+.... .. .....++|..+.|+++|+|++.....+.+
T Consensus 173 ~~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~ 252 (592)
T 3mca_A 173 NPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES 252 (592)
T ss_dssp CCCCEEEEEEECCSSSTHHHHHHHHHHHHHCC------------------------------------------------
T ss_pred cCCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe
Confidence 345678999999999999999999998776554320 00 11246789999999999999999999999
Q ss_pred cCeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCC-------chhHHHHHHHHHhcCCC-EEEEEeCCCcCCCcH
Q 007325 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-------EPQSETVWRQADKYGVP-RICFVNKMDRLGANF 224 (608)
Q Consensus 153 ~~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~-------~~~t~~~~~~~~~~~~p-~ivviNK~D~~~~~~ 224 (608)
+++.++|||||||.+|...+..+++.+|++|+|||+++|. ..|+.+++..+...++| +|+|+||+|+...+.
T Consensus 253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~~~~ 332 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSE 332 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGTTCH
T ss_pred CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccccccH
Confidence 9999999999999999999999999999999999999854 89999999999999998 788999999876431
Q ss_pred ---HHHHHHHHHhhCCccEEEeccCCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHh
Q 007325 225 ---FRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVE 301 (608)
Q Consensus 225 ---~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~ 301 (608)
..+.+++.+.+.
T Consensus 333 ~~~~~i~~el~~~l~----------------------------------------------------------------- 347 (592)
T 3mca_A 333 DRFQEIKNIVSDFLI----------------------------------------------------------------- 347 (592)
T ss_dssp HHHHHHHHHHHHHHT-----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHH-----------------------------------------------------------------
Confidence 112222221110
Q ss_pred hcHHHHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeeccCCCCChH--------------HHHHHHHHhCCCCCCCCC
Q 007325 302 LDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQ--------------PLLDAVVDYLPSPLDLPA 367 (608)
Q Consensus 302 ~dd~l~e~~l~~~~~~~~el~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~--------------~Lld~i~~~lP~p~~~~~ 367 (608)
........-+|++++||++|.||. .|++.|.+++|++ .
T Consensus 348 ------------------------~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~pp~-~--- 399 (592)
T 3mca_A 348 ------------------------KMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVPPE-K--- 399 (592)
T ss_dssp ------------------------TTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCCCS-C---
T ss_pred ------------------------HhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcccc-c---
Confidence 000011123689999999999998 8999999988732 1
Q ss_pred CCCCCCCCccchhccccCCCCCeEEEEEEeeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeec
Q 007325 368 MKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDV 447 (608)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v 447 (608)
+.+.|+.+.|..++.. +.|++.+|||.+|+|++||.|.+.+.+...+|.+|... ..++
T Consensus 400 -----------------~~~~p~r~~v~~v~~~-~~g~v~~G~v~~G~l~~Gd~v~i~p~~~~~~V~~i~~~----~~~~ 457 (592)
T 3mca_A 400 -----------------PYRKPLRLSIDDVYRS-PRSVTVTGRVEAGNVQVNQVLYDVSSQEDAYVKNVIRN----SDPS 457 (592)
T ss_dssp -----------------TTTSCCEEEEEEEEEE-TTEEEEEEEEEESEEETTCEEEETTTTEEEEEEEEECS----SSCS
T ss_pred -----------------cccccchheeeEEEec-CCeEEEEEEEeeeeEccCCEEEEccCCceEEEEEEEEc----CccC
Confidence 1368999999999998 88999999999999999999999998988899998742 4679
Q ss_pred C-eeecCCEEEE--cCCC--cccccceeccCCCC
Q 007325 448 K-VALAGDIIAL--AGLK--DTITGETLCDADHP 476 (608)
Q Consensus 448 ~-~a~aGdIv~i--~gl~--~~~~GdtL~~~~~~ 476 (608)
+ +|.|||+|++ .|++ ++..||+||+++.+
T Consensus 458 ~~~a~aG~~v~~~l~~i~~~~i~rG~vl~~~~~~ 491 (592)
T 3mca_A 458 STWAVAGDTVTLQLADIEVNQLRPGDILSNYENP 491 (592)
T ss_dssp CCEEETTCEEEEEESSSCGGGCCTTCEEECSSSC
T ss_pred cceecCCCEEEEEEccccccccceEEEeccCCCC
Confidence 9 9999999996 5654 48899999987653
No 19
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=100.00 E-value=4.1e-34 Score=302.68 Aligned_cols=242 Identities=13% Similarity=0.087 Sum_probs=196.6
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchH
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~ 170 (608)
++|+++||+|+|||||+++|+ ++|+|++.....+.++++.++|||||||.+|..
T Consensus 22 ~~i~iiG~~d~GKSTL~~~L~--------------------------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~ 75 (370)
T 2elf_A 22 ANVAIIGTEKSGRTSLAANLG--------------------------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLK 75 (370)
T ss_dssp EEEEEEESTTSSHHHHHHTTS--------------------------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHH
T ss_pred CEEEEECCCCCCHHHHHHHHH--------------------------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHH
Confidence 499999999999999999994 478899999999999999999999999999999
Q ss_pred HHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCE-EEEEe-CCCcCCCcH-HHHHHHHHHhhCCccEEEeccCC
Q 007325 171 EVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVN-KMDRLGANF-FRTRDMIVTNLGAKPLVVQLPVG 247 (608)
Q Consensus 171 ~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~-ivviN-K~D~~~~~~-~~~~~~i~~~l~~~~~~~~~pi~ 247 (608)
.+..+++.+|++|+||| .+++..|+++++..+...++|. ++|+| |+|+ ..+. +++.+++++.+..
T Consensus 76 ~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~---------- 143 (370)
T 2elf_A 76 SLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HMHAIDELKAKLKVITSG---------- 143 (370)
T ss_dssp HHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTT----------
T ss_pred HHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHh----------
Confidence 99999999999999999 9999999999999999999999 89999 9998 4321 2222222222110
Q ss_pred CCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHHhcCCCCCHHHHHHHHHh
Q 007325 248 AEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRK 327 (608)
Q Consensus 248 ~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l~~~~~~~~el~~~l~~ 327 (608)
.
T Consensus 144 ------------------------------------------------------------------~------------- 144 (370)
T 2elf_A 144 ------------------------------------------------------------------T------------- 144 (370)
T ss_dssp ------------------------------------------------------------------S-------------
T ss_pred ------------------------------------------------------------------c-------------
Confidence 0
Q ss_pred hcccCcceeeee--eccCC---CCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccchhccccCCCCCeEEEEEEeeecCC
Q 007325 328 GTIAGSFVPVLC--GSAFK---NKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPF 402 (608)
Q Consensus 328 ~~~~~~~~Pv~~--~SA~~---~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~ 402 (608)
....+|+++ +||++ +.|+++|++.|.+++|+|.. . ... ....|+..+|..++..++
T Consensus 145 ---~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~~~~--~---------~~~-----~~~~p~r~~v~~vf~~~~ 205 (370)
T 2elf_A 145 ---VLQDWECISLNTNKSAKNPFEGVDELKARINEVAEKIEA--E---------NAE-----LNSLPARIFIDHAFNVTG 205 (370)
T ss_dssp ---TTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHHHHH--H---------HHH-----GGGSCCEEEEEEEECCC-
T ss_pred ---CCCceEEEecccccccCcCCCCHHHHHHHHHhhcccccc--C---------Ccc-----cccccccccceeEEEcCC
Confidence 012368999 99999 99999999999999987621 0 000 023566667777777789
Q ss_pred CceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCeeecCCEEEEc--C--CCcccccceecc
Q 007325 403 VGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALA--G--LKDTITGETLCD 472 (608)
Q Consensus 403 ~G~la~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~--g--l~~~~~GdtL~~ 472 (608)
.|+++++||++|+|++||+|++.+.+...+|++|.. + ..++++|.|||+|++. | .+++.+||+|+.
T Consensus 206 ~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~-~---~~~v~~a~aGd~v~i~l~gv~~~~i~~Gdvl~~ 275 (370)
T 2elf_A 206 KGCVVLGVVKQGISKDKDKTKIFPLDRDIEIRSIQS-H---DVDIDSAPAGTRVGMRLKNVQAKDIERGFIISD 275 (370)
T ss_dssp --CEEEEEEEESEEETTCEEEEETTTEEEEEEEEEE-T---TEEESEEETTCEEEEEEESCCGGGCCTTCEEES
T ss_pred CceEEEEEEECCEEeeCCEEEECCCCcEEEEeEEEE-C---CCCccEEcCCCcceEEEeccCHHHcCCceEEEC
Confidence 999999999999999999999999999999999854 3 2789999999999996 4 457899999997
No 20
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=100.00 E-value=6.8e-33 Score=304.23 Aligned_cols=281 Identities=21% Similarity=0.248 Sum_probs=203.6
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccc------------ee-eccCCccccchhhhhhcceeEeecEEEEeecC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKI------------GE-VHEGTATMDWMEQEQERGITITSAATTTYWNK 154 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~------------g~-~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~ 154 (608)
+...+|+++|++|+|||||+++|++..+.+... |. -.....++|....|+++|+|++.....+.+.+
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 345799999999999999999999886654431 10 01234668999999999999999999999999
Q ss_pred eeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCC-------CchhHHHHHHHHHhcCCC-EEEEEeCCCcCCCcHHH
Q 007325 155 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG-------VEPQSETVWRQADKYGVP-RICFVNKMDRLGANFFR 226 (608)
Q Consensus 155 ~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g-------~~~~t~~~~~~~~~~~~p-~ivviNK~D~~~~~~~~ 226 (608)
+.++|||||||.+|...+..+++.+|++|+|||++++ +..|+.+++..+...+++ +++|+||+|+...+..
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~- 189 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQ- 189 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHH-
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHH-
Confidence 9999999999999999999999999999999999987 678999999999888865 8899999998753311
Q ss_pred HHHHHHHhhCCccEEEeccCCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHH
Q 007325 227 TRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEA 306 (608)
Q Consensus 227 ~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l 306 (608)
..+++.+
T Consensus 190 ~~~~i~~------------------------------------------------------------------------- 196 (483)
T 3p26_A 190 RFEEIKS------------------------------------------------------------------------- 196 (483)
T ss_dssp HHHHHHH-------------------------------------------------------------------------
T ss_pred HHHHHHH-------------------------------------------------------------------------
Confidence 1111110
Q ss_pred HHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeeccCCCCChHH------------------HHHHHHHhCCC--CCCCC
Q 007325 307 MESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQP------------------LLDAVVDYLPS--PLDLP 366 (608)
Q Consensus 307 ~e~~l~~~~~~~~el~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~------------------Lld~i~~~lP~--p~~~~ 366 (608)
++...+...-.....+|++.+||++|.|+++ +|+.+...+|. |..
T Consensus 197 -------------~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~~~~~~~~wy~g~~L~~~L~~i~~~~~~~~p~~-- 261 (483)
T 3p26_A 197 -------------KLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGI-- 261 (483)
T ss_dssp -------------HHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSCCCHHHHHHCCSCCHHHHHHHHHHHHHHHHTTC--
T ss_pred -------------HHHHHHHHcCCCcccceEEEEeeecCCCccccCcccccccccCCCCHHHHHHHHHhhcccccccc--
Confidence 0111111111112246899999999999873 45555545554 322
Q ss_pred CCCCCCCCCccchhccccCCCCCeEEEEEEeeecC---CCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEee---
Q 007325 367 AMKGTDPENPEATLERAASDDEPFAGLAFKIMSDP---FVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMH--- 440 (608)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~---~~G~la~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~--- 440 (608)
..+.|+.+.|..++..+ +.|++..|||.+|+|++||.|...+.+...+|.+|....
T Consensus 262 ------------------~~~~p~r~~v~~v~~~~~~~g~g~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~ 323 (483)
T 3p26_A 262 ------------------NKDDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQG 323 (483)
T ss_dssp ------------------CSSSCCEEEEEEEEC---CCSCCEEEEEEEEESEECTTCEEEEETTTEEEEEEEEEETTTC-
T ss_pred ------------------cCCCceEEEEEEEEccCCcCCCceEEEEEEecceEccCCEEEEeCCCCeEEEEEEEEcCccc
Confidence 23689999999988876 479999999999999999999999989888999997653
Q ss_pred -cCceeecCeeecCCEEEE----cCCCcccccceeccCCC
Q 007325 441 -ANSREDVKVALAGDIIAL----AGLKDTITGETLCDADH 475 (608)
Q Consensus 441 -g~~~~~v~~a~aGdIv~i----~gl~~~~~GdtL~~~~~ 475 (608)
|..+.++++|.|||+|+| .+.+++..||+|++++.
T Consensus 324 ~~~~~~~~~~a~aG~~v~~~l~~~~~~di~rG~vl~~~~~ 363 (483)
T 3p26_A 324 QSTNHEETDVAIKGDFVTLKLRKAYPEDIQNGDLAASVDY 363 (483)
T ss_dssp ----CCEESCEETTCEEEEEEESCCGGGCCTTCEEECTTC
T ss_pred cccccccccEECCCCEEEEEEEecccccCCceEEEEcCCC
Confidence 445688999999999999 34467899999998765
No 21
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=100.00 E-value=1.2e-32 Score=298.45 Aligned_cols=277 Identities=22% Similarity=0.236 Sum_probs=206.2
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccc--eee-----ccCC--------ccccchhhhhhcceeEeecEEEEee
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKI--GEV-----HEGT--------ATMDWMEQEQERGITITSAATTTYW 152 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~--g~~-----~~g~--------~~~d~~~~e~~~giTi~~~~~~~~~ 152 (608)
+...+|+++||+|+|||||+++|++..+.+... ..+ ..|+ ..+|..+.|+++|+|++.....+.+
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 456899999999999999999999876543221 000 1122 3478889999999999999999999
Q ss_pred cCeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCC-EEEEEeCCCcCCCcHHHHHHHH
Q 007325 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGANFFRTRDMI 231 (608)
Q Consensus 153 ~~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p-~ivviNK~D~~~~~~~~~~~~i 231 (608)
++..++|||||||.+|...+..+++.+|++|+|+|++++...|+.+++..+...++| +++|+||+|+...+.+. ++++
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~~-~~~i 180 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERV-FESI 180 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHH-HHHH
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHHH-HHHH
Confidence 999999999999999999999999999999999999999999999999998888886 78899999997643111 1111
Q ss_pred HHhhCCccEEEeccCCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHHh
Q 007325 232 VTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYL 311 (608)
Q Consensus 232 ~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l 311 (608)
.+
T Consensus 181 ~~------------------------------------------------------------------------------ 182 (434)
T 1zun_B 181 KA------------------------------------------------------------------------------ 182 (434)
T ss_dssp HH------------------------------------------------------------------------------
T ss_pred HH------------------------------------------------------------------------------
Confidence 00
Q ss_pred cCCCCCHHHHHHHHHhhcccCcceeeeeeccCCCCChHH------------HHHHHHHhCCCCCCCCCCCCCCCCCccch
Q 007325 312 EGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQP------------LLDAVVDYLPSPLDLPAMKGTDPENPEAT 379 (608)
Q Consensus 312 ~~~~~~~~el~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~------------Lld~i~~~lP~p~~~~~~~~~~~~~~~~~ 379 (608)
++.+.++........+|++.+||++|.|+++ |++.| +.+|.|..
T Consensus 183 --------~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~~~w~~g~~L~~~l-~~i~~~~~--------------- 238 (434)
T 1zun_B 183 --------DYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSERSPWYAGQSLMEIL-ETVEIASD--------------- 238 (434)
T ss_dssp --------HHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTTCTTCCSCCTTHHH-HHSCCTTC---------------
T ss_pred --------HHHHHHHHhCCCccCceEEEEeccCCCCcccccccCccccCchHHHHH-hcCCCccc---------------
Confidence 0011111100001236899999999999986 55544 45665533
Q ss_pred hccccCCCCCeEEEEEEeeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCeeecCCEEEEc
Q 007325 380 LERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALA 459 (608)
Q Consensus 380 ~~~~~~~~~p~~~~V~K~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~ 459 (608)
+.+.|+.+.|..++...+.|+...+||.+|+|++||.|...+.++..+|.+|.... .++++|.|||+|++.
T Consensus 239 -----~~~~~~~~~v~~v~~~~~~~~g~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~----~~~~~a~aG~~v~~~ 309 (434)
T 1zun_B 239 -----RNYTDLRFPVQYVNRPNLNFRGFAGTLASGIVHKGDEIVVLPSGKSSRVKSIVTFE----GELEQAGPGQAVTLT 309 (434)
T ss_dssp -----CCSSSCEEECCEEECSSSSCCEEEEECCBSCEETTCEEEETTTCCEEEEEEEEETT----EEESEECTTCEEEEE
T ss_pred -----CCCCCcEEEEEEEeccCCCceEEEEEEecceEeCCCEEEEecCCeEEEEEEEEEcC----cceeEecCCCEEEEE
Confidence 13578898888877666667888899999999999999999888888999987654 479999999999996
Q ss_pred CCC--cccccceeccCCCC
Q 007325 460 GLK--DTITGETLCDADHP 476 (608)
Q Consensus 460 gl~--~~~~GdtL~~~~~~ 476 (608)
..+ ++..||+|+.++.+
T Consensus 310 l~~~~~i~~G~~l~~~~~~ 328 (434)
T 1zun_B 310 MEDEIDISRGDLLVHADNV 328 (434)
T ss_dssp ESSCCCCCTTCEEEETTSC
T ss_pred eCCccccCCccEEECCCCC
Confidence 543 47899999987643
No 22
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=100.00 E-value=1.4e-33 Score=308.09 Aligned_cols=277 Identities=22% Similarity=0.304 Sum_probs=183.0
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccc------------eee-ccCCccccchhhhhhcceeEeecEEEEeecC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKI------------GEV-HEGTATMDWMEQEQERGITITSAATTTYWNK 154 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~------------g~~-~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~ 154 (608)
+...+|+++||+|+|||||+++|++.++.+... |.. .....++|..+.|+++|+|++.....+.+++
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 456899999999999999999999877765321 110 1124568999999999999999999999999
Q ss_pred eeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCc-------hhHHHHHHHHHhcCCC-EEEEEeCCCcCCCcHH-
Q 007325 155 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVE-------PQSETVWRQADKYGVP-RICFVNKMDRLGANFF- 225 (608)
Q Consensus 155 ~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~-------~~t~~~~~~~~~~~~p-~ivviNK~D~~~~~~~- 225 (608)
..++|||||||.+|...+..+++.+|++|+|||+++|+. .|+++++..+...++| +++|+||+|+...+++
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~ 200 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSE 200 (467)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCH
T ss_pred eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccH
Confidence 999999999999999999999999999999999999863 7999999999999998 8899999999654311
Q ss_pred HHHHHHHHhhCCccEEEeccCCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHH
Q 007325 226 RTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDE 305 (608)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~ 305 (608)
+.++.+.+
T Consensus 201 ~~~~~i~~------------------------------------------------------------------------ 208 (467)
T 1r5b_A 201 ERYKECVD------------------------------------------------------------------------ 208 (467)
T ss_dssp HHHHHHHH------------------------------------------------------------------------
T ss_pred HHHHHHHH------------------------------------------------------------------------
Confidence 11111100
Q ss_pred HHHHHhcCCCCCHHHHHHHHHhh-ccc-CcceeeeeeccCCCCChHH--------------HHHHHHHhCCCCCCCCCCC
Q 007325 306 AMESYLEGNEPDEETIKKLIRKG-TIA-GSFVPVLCGSAFKNKGVQP--------------LLDAVVDYLPSPLDLPAMK 369 (608)
Q Consensus 306 l~e~~l~~~~~~~~el~~~l~~~-~~~-~~~~Pv~~~SA~~~~Gi~~--------------Lld~i~~~lP~p~~~~~~~ 369 (608)
++...+... ... ..-+|++.+||++|.|+.+ |++.| +.+|.|..
T Consensus 209 --------------e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~~~~~~w~~g~~L~~~l-~~i~~~~~----- 268 (467)
T 1r5b_A 209 --------------KLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGPSLLEYL-DSMTHLER----- 268 (467)
T ss_dssp --------------HHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCTTTCSSCCSCCHHHHH-HHCCCCHH-----
T ss_pred --------------HHHHHHHHhcCCCccCCceEEecccccccccccccccccCccccchhHHHHH-HhCCCCcC-----
Confidence 001111110 000 1126889999999999875 55555 44665532
Q ss_pred CCCCCCccchhccccCCCCCeEEEEEEeeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCe
Q 007325 370 GTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKV 449 (608)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~ 449 (608)
+.+.|+.+.|..++.+ .|++++|||.+|+|++||.|...+.+...+|.+|+.. ...++++
T Consensus 269 ---------------~~~~p~~~~v~~~~~~--~G~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~---~~~~~~~ 328 (467)
T 1r5b_A 269 ---------------KVNAPFIMPIASKYKD--LGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDE---ADEEISS 328 (467)
T ss_dssp ---------------HHTSCCEEECCEEEES--SSEEEEEECCBSEEETTEEEEEETTTEEEEEEEEECT---TCCEESE
T ss_pred ---------------CCCCCcEEEEEEEEeC--CCeEEEEEEeeeEEeeCCEEEEccCCeeEEEEEEecc---CCcEeeE
Confidence 1367899999888764 6899999999999999999999888888888888642 2578999
Q ss_pred eecCCEEEE--cC-CCcccccceeccCCCC
Q 007325 450 ALAGDIIAL--AG-LKDTITGETLCDADHP 476 (608)
Q Consensus 450 a~aGdIv~i--~g-l~~~~~GdtL~~~~~~ 476 (608)
|.|||+|++ .| .+++..||+|++++++
T Consensus 329 a~aG~~v~i~l~g~~~~i~rG~vl~~~~~~ 358 (467)
T 1r5b_A 329 SICGDQVRLRVRGDDSDVQTGYVLTSTKNP 358 (467)
T ss_dssp EETTCEEEEEEESCCTTCCTTCEEECSSSC
T ss_pred EcCCCEEEEEEeccHhhCCceEEEeCCCCC
Confidence 999999999 55 5678999999987643
No 23
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=100.00 E-value=2.7e-33 Score=323.56 Aligned_cols=274 Identities=24% Similarity=0.342 Sum_probs=201.4
Q ss_pred CCCceeEEEEcCCCCchHHHHHHHHHhhCCccccee-eccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCC
Q 007325 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGE-VHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (608)
Q Consensus 87 ~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~-~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 165 (608)
.+...+|+++||+|+|||||+++|+.... ..+. .....+.+|..+.|+++|+|++.....+.+++..++|||||||
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~---~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGH 369 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLA---KTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGH 369 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHH---HHSCC---------------------CCSCEEEECSSCEEEEEECCCH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhc---cccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCCh
Confidence 34568999999999999999999975321 1110 0111235788899999999999998888888999999999999
Q ss_pred CCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCC-EEEEEeCCCcCCCcHHHHHHHHHHhhCCccEEEec
Q 007325 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQL 244 (608)
Q Consensus 166 ~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p-~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~ 244 (608)
.+|...+..+++.+|++|+|||++++...|+.++|..+...++| +|+|+||+|+.... +.++.+.
T Consensus 370 edF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~--e~le~i~------------ 435 (1289)
T 3avx_A 370 ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDE--ELLELVE------------ 435 (1289)
T ss_dssp HHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCH--HHHHHHH------------
T ss_pred HHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccch--hhHHHHH------------
Confidence 99999999999999999999999999999999999999999999 68899999987421 1111110
Q ss_pred cCCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHHhcCCCCCHHHHHHH
Q 007325 245 PVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKL 324 (608)
Q Consensus 245 pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l~~~~~~~~el~~~ 324 (608)
+++.+.
T Consensus 436 --------------------------------------------------------------------------eEi~el 441 (1289)
T 3avx_A 436 --------------------------------------------------------------------------MEVREL 441 (1289)
T ss_dssp --------------------------------------------------------------------------HHHHHH
T ss_pred --------------------------------------------------------------------------HHHHHH
Confidence 011111
Q ss_pred HHhhcccCcceeeeeeccCCC--------CChHHHHHHHHHhCCCCCCCCCCCCCCCCCccchhccccCCCCCeEEEEEE
Q 007325 325 IRKGTIAGSFVPVLCGSAFKN--------KGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFK 396 (608)
Q Consensus 325 l~~~~~~~~~~Pv~~~SA~~~--------~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K 396 (608)
+.........+|++++||++| .|+++|++.|.+++|.|.. +.++|+.+.|..
T Consensus 442 Lk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~P~r--------------------~~d~Pfr~pId~ 501 (1289)
T 3avx_A 442 LSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPER--------------------AIDKPFLLPIED 501 (1289)
T ss_dssp HHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCCCCC--------------------GGGSCCEEECCE
T ss_pred HHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCCCcc--------------------ccccceeeeccc
Confidence 111111122468999999999 5799999999999998754 136899999999
Q ss_pred eeecCCCceEEEEEEecceeCCCCEEEeCCCC--ceeecceEEEeecCceeecCeeecCCEEEE--cCC--Cccccccee
Q 007325 397 IMSDPFVGSLTFVRVYAGTLSAGSYVLNANKG--KKERIGRLLEMHANSREDVKVALAGDIIAL--AGL--KDTITGETL 470 (608)
Q Consensus 397 ~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~--~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl--~~~~~GdtL 470 (608)
++.++++|.++++||++|+|++||.|.+.+.+ ...+|.+|... ..++++|.|||+|++ .|+ +++..||+|
T Consensus 502 Vf~i~G~GtVvtGrV~sGtLkvGD~V~I~ps~~~~~~kVksI~~~----~~~v~eA~AGd~Vgl~L~GI~~~dI~RGdVL 577 (1289)
T 3avx_A 502 VFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMF----RKLLDEGRAGENVGVLLRGIKREEIERGQVL 577 (1289)
T ss_dssp EEEETTTEEEEEEECCBSEEETTCEEEEESSSSCEEEEEEEEECS----SCEESEEETTCEEEEEESSCCGGGCCTTCEE
T ss_pred cccccCCcEEEEEEEeccEEecCCEEEEecCCCceeEEEEEEeec----CceeeEEecCCcceeEeeecchhcCCcccEE
Confidence 99999999999999999999999999987766 56788888532 367999999999987 355 568899999
Q ss_pred ccCCC
Q 007325 471 CDADH 475 (608)
Q Consensus 471 ~~~~~ 475 (608)
+.++.
T Consensus 578 ~~~~~ 582 (1289)
T 3avx_A 578 AKPGT 582 (1289)
T ss_dssp ESTTS
T ss_pred ecCCC
Confidence 98653
No 24
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=100.00 E-value=1.6e-32 Score=295.48 Aligned_cols=257 Identities=24% Similarity=0.356 Sum_probs=196.0
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeec--------------
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-------------- 153 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~-------------- 153 (608)
+..++|+++||+|||||||+++|+ | ...|..+.|.++|+|+...+..+.+.
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~---g------------~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~ 72 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALT---G------------VWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVC 72 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHH---T------------CCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBC
T ss_pred CCccEEEEECCCCCCHHHHHHHHh---C------------CccccChhhhcCCcEEEEeeeeeecccccccccccccccc
Confidence 456899999999999999999995 2 12466678899999998877665541
Q ss_pred ---------CeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCC-chhHHHHHHHHHhcCC-CEEEEEeCCCcCCC
Q 007325 154 ---------KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-EPQSETVWRQADKYGV-PRICFVNKMDRLGA 222 (608)
Q Consensus 154 ---------~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~-~~~t~~~~~~~~~~~~-p~ivviNK~D~~~~ 222 (608)
...++|||||||.+|..++.+++..+|++|+|||++++. +.|+.+++..+...++ |+++|+||+|+...
T Consensus 73 ~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~ 152 (410)
T 1kk1_A 73 PYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDK 152 (410)
T ss_dssp TTTCCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCH
T ss_pred cccCcccccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCH
Confidence 168999999999999999999999999999999999998 8999999988887776 67888999998754
Q ss_pred cH-HHHHHHHHHhhCCccEEEeccCCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHh
Q 007325 223 NF-FRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVE 301 (608)
Q Consensus 223 ~~-~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~ 301 (608)
+. ....++++
T Consensus 153 ~~~~~~~~~i~--------------------------------------------------------------------- 163 (410)
T 1kk1_A 153 EKALENYRQIK--------------------------------------------------------------------- 163 (410)
T ss_dssp HHHHHHHHHHH---------------------------------------------------------------------
T ss_pred HHHHHHHHHHH---------------------------------------------------------------------
Confidence 21 11111111
Q ss_pred hcHHHHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeeccCCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccchhc
Q 007325 302 LDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLE 381 (608)
Q Consensus 302 ~dd~l~e~~l~~~~~~~~el~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~ 381 (608)
+|+.+ . ....+|++++||++|.|+++|+++|.+++|.|..
T Consensus 164 -------~~l~~--------------~--~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p~~----------------- 203 (410)
T 1kk1_A 164 -------EFIEG--------------T--VAENAPIIPISALHGANIDVLVKAIEDFIPTPKR----------------- 203 (410)
T ss_dssp -------HHHTT--------------S--TTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCCC-----------------
T ss_pred -------HHHHh--------------c--CcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCcc-----------------
Confidence 12111 0 0123689999999999999999999999998754
Q ss_pred cccCCCCCeEEEEEEeee--------cCCCceEEEEEEecceeCCCCEEEeCCCCc------------eeecceEEEeec
Q 007325 382 RAASDDEPFAGLAFKIMS--------DPFVGSLTFVRVYAGTLSAGSYVLNANKGK------------KERIGRLLEMHA 441 (608)
Q Consensus 382 ~~~~~~~p~~~~V~K~~~--------d~~~G~la~~RV~sG~l~~g~~v~~~~~~~------------~~ki~~i~~~~g 441 (608)
+.+.|+.+.|...+. ++++|.++++||++|+|++||.|.+.+.++ ..+|..|. .
T Consensus 204 ---~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~g~~~~~~~~~~v~~i~---~ 277 (410)
T 1kk1_A 204 ---DPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQ---A 277 (410)
T ss_dssp ---CTTSCCEEEEEEEECCSCCC----CCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEE---E
T ss_pred ---ccCCCcEEEEEEEEeccCCCccccCCceEEEEEEEEeCeEeeCCEEEECCCCccccccccccccceeEEEEEE---E
Confidence 135788888887653 466899999999999999999999865432 23455544 2
Q ss_pred CceeecCeeecCCEEEEc-CC------CcccccceeccCCC
Q 007325 442 NSREDVKVALAGDIIALA-GL------KDTITGETLCDADH 475 (608)
Q Consensus 442 ~~~~~v~~a~aGdIv~i~-gl------~~~~~GdtL~~~~~ 475 (608)
...++++|.|||++++. ++ .++..|++|+.++.
T Consensus 278 -~~~~v~~a~aG~~v~~~~~~~~~~~~~d~~~G~vl~~~~~ 317 (410)
T 1kk1_A 278 -GGQFVEEAYPGGLVGVGTKLDPYLTKGDLMAGNVVGKPGK 317 (410)
T ss_dssp -TTEEESEECSSSCEEEEESSCGGGTGGGTTTTCEEECTTC
T ss_pred -CCeEecEEcCCCEEEEEEecCcccchhhccceeEEecCCC
Confidence 35789999999988884 32 34678999998654
No 25
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=100.00 E-value=5.6e-32 Score=294.63 Aligned_cols=272 Identities=25% Similarity=0.306 Sum_probs=212.5
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccc---------eeeccC----CccccchhhhhhcceeEeecEEEEeecCe
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKI---------GEVHEG----TATMDWMEQEQERGITITSAATTTYWNKH 155 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~---------g~~~~g----~~~~d~~~~e~~~giTi~~~~~~~~~~~~ 155 (608)
...+|+++||+|+|||||+++|++..+.+... .+...+ ..++|..+.|+++|+|++.....+.+.++
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~ 85 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCc
Confidence 35799999999999999999999876544321 000111 23568888999999999999999999999
Q ss_pred eEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCch-------hHHHHHHHHHhcCCC-EEEEEeCCCcCCCcH---
Q 007325 156 RINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEP-------QSETVWRQADKYGVP-RICFVNKMDRLGANF--- 224 (608)
Q Consensus 156 ~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~-------~t~~~~~~~~~~~~p-~ivviNK~D~~~~~~--- 224 (608)
.++|||||||.+|...+..+++.+|++|+|||++++... |+.+++..+...++| +++|+||+|+...+.
T Consensus 86 ~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~~~~ 165 (458)
T 1f60_A 86 QVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRF 165 (458)
T ss_dssp EEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHHHH
T ss_pred eEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccCCHHHH
Confidence 999999999999999999999999999999999988765 899999988889997 788999999874321
Q ss_pred HHHHHHHHHhhCCccEEEeccCCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcH
Q 007325 225 FRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDD 304 (608)
Q Consensus 225 ~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd 304 (608)
+.+.++++
T Consensus 166 ~~i~~~~~------------------------------------------------------------------------ 173 (458)
T 1f60_A 166 QEIVKETS------------------------------------------------------------------------ 173 (458)
T ss_dssp HHHHHHHH------------------------------------------------------------------------
T ss_pred HHHHHHHH------------------------------------------------------------------------
Confidence 11111111
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeeccCCCCChH------------------------HHHHHHHHhCC
Q 007325 305 EAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQ------------------------PLLDAVVDYLP 360 (608)
Q Consensus 305 ~l~e~~l~~~~~~~~el~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~------------------------~Lld~i~~~lP 360 (608)
+.+.........+|++.+||++|.|+. .|+++|.. +|
T Consensus 174 ------------------~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~~~~~~~~~~~~~~~tg~~~~~~Ll~~l~~-~~ 234 (458)
T 1f60_A 174 ------------------NFIKKVGYNPKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAIDA-IE 234 (458)
T ss_dssp ------------------HHHHHHTCCGGGCCEEECCTTTCBTTTBCCSSCTTCCCEEEECSSSEEEESSHHHHHHT-SC
T ss_pred ------------------HHHHHcCCCccCceEEEeecccCcCcccccccCchhhcccccccccccchHHHHHHhhc-cC
Confidence 111111000112578889999999975 47777654 45
Q ss_pred CCCCCCCCCCCCCCCccchhccccCCCCCeEEEEEEeeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEee
Q 007325 361 SPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMH 440 (608)
Q Consensus 361 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~ 440 (608)
.|.. ..+.|+.+.|..++..++.|++++|||.+|+++.||.|...+.+...+|.+|...
T Consensus 235 ~p~~--------------------~~~~p~r~~i~~v~~~~g~G~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~- 293 (458)
T 1f60_A 235 QPSR--------------------PTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTEVKSVEMH- 293 (458)
T ss_dssp CCCC--------------------CTTSCCEEEEEEEEEETTTEEEEEEECCBSCBCTTCEEEEETTTEEEEEEEEEET-
T ss_pred CCcc--------------------cCCCCcEEEEEEEEEeCCCcEEEEEEEeCCeEcCCCEEEECCCCceEEEeEEEEC-
Confidence 4432 2368999999999999999999999999999999999999888888899988642
Q ss_pred cCceeecCeeecCCEEEE--cCC--CcccccceeccCCC
Q 007325 441 ANSREDVKVALAGDIIAL--AGL--KDTITGETLCDADH 475 (608)
Q Consensus 441 g~~~~~v~~a~aGdIv~i--~gl--~~~~~GdtL~~~~~ 475 (608)
..++++|.|||+++| .|+ +++..||+|+.++.
T Consensus 294 ---~~~~~~a~aG~~v~i~l~gi~~~~i~rG~vl~~~~~ 329 (458)
T 1f60_A 294 ---HEQLEQGVPGDNVGFNVKNVSVKEIRRGNVCGDAKN 329 (458)
T ss_dssp ---TEECSCBCTTCEEEEEESSCCTTTSCTTCEEEETTS
T ss_pred ---CeEEEEEcCCCEEEEEEcCCcccccCceeEEecCCC
Confidence 367999999999998 465 56899999998754
No 26
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-32 Score=308.18 Aligned_cols=286 Identities=20% Similarity=0.245 Sum_probs=216.2
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccc------------ee-eccCCccccchhhhhhcceeEeecEEEEeecC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKI------------GE-VHEGTATMDWMEQEQERGITITSAATTTYWNK 154 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~------------g~-~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~ 154 (608)
+...+|+++|++|+|||||+++|++..+.+... |. -.....++|....|+++|+|+......+.+.+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 446799999999999999999998765544321 11 01224567888999999999999999999999
Q ss_pred eeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCC-------CchhHHHHHHHHHhcCCC-EEEEEeCCCcCCCcHHH
Q 007325 155 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG-------VEPQSETVWRQADKYGVP-RICFVNKMDRLGANFFR 226 (608)
Q Consensus 155 ~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g-------~~~~t~~~~~~~~~~~~p-~ivviNK~D~~~~~~~~ 226 (608)
++++|||||||.+|...+..+++.+|++|+|||+++| +..|+.+++..+...++| +++|+||+|+...+..
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~- 323 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQ- 323 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHH-
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHH-
Confidence 9999999999999999999999999999999999987 568999999999988887 7888999998763211
Q ss_pred HHHHHHHhhCCccEEEeccCCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHH
Q 007325 227 TRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEA 306 (608)
Q Consensus 227 ~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l 306 (608)
..+++.+
T Consensus 324 ~~~ei~~------------------------------------------------------------------------- 330 (611)
T 3izq_1 324 RFEEIKS------------------------------------------------------------------------- 330 (611)
T ss_dssp HHHHHHH-------------------------------------------------------------------------
T ss_pred HHHHHHH-------------------------------------------------------------------------
Confidence 0111110
Q ss_pred HHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeeccCCCCChHH---------------HHHHHHHhCCCCCCCCCCCCC
Q 007325 307 MESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQP---------------LLDAVVDYLPSPLDLPAMKGT 371 (608)
Q Consensus 307 ~e~~l~~~~~~~~el~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~---------------Lld~i~~~lP~p~~~~~~~~~ 371 (608)
++...+.+.......+|++.+||++|.||.+ |++.|....+.+.....
T Consensus 331 -------------~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~~L~~l~~~~p~~~p---- 393 (611)
T 3izq_1 331 -------------KLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENE---- 393 (611)
T ss_dssp -------------HHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHHHHTTSCCCCCCSSS----
T ss_pred -------------HHHHHHHhhcccccCccEEeeecccCCCccccCccccccccccCCcHHHHHHHHhhcccccCc----
Confidence 0111111111112246899999999999974 44444333221110000
Q ss_pred CCCCccchhccccCCCCCeEEEEEEeeecC---CCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEee----cCce
Q 007325 372 DPENPEATLERAASDDEPFAGLAFKIMSDP---FVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMH----ANSR 444 (608)
Q Consensus 372 ~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~---~~G~la~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~----g~~~ 444 (608)
....+.|+.+.|..++..+ +.|++..|||.+|+|++||.|.+.+.+...+|.+|.... |..+
T Consensus 394 -----------~~~~~~p~r~~V~~v~~~~~~~g~g~v~~G~V~~G~lk~Gd~v~~~p~~~~~~VksI~~~~~~~~~~~~ 462 (611)
T 3izq_1 394 -----------GINKDDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNH 462 (611)
T ss_dssp -----------CCSCCSCCEEECCEEECCSSSCSSSSEEEEEEEESEECTTCEEEETTTTEEEEEEEEECSSCCSCSSSC
T ss_pred -----------ccccccchhhheeeeeccCccCCCeeEEEEEEEeceeccCCEEEEecCCceEEEEEEEEcccccccccc
Confidence 0124689999999988876 579999999999999999999999999888999997653 5567
Q ss_pred eecCeeecCCEEEE--cC--CCcccccceeccCCC
Q 007325 445 EDVKVALAGDIIAL--AG--LKDTITGETLCDADH 475 (608)
Q Consensus 445 ~~v~~a~aGdIv~i--~g--l~~~~~GdtL~~~~~ 475 (608)
.++++|.|||+|+| .+ ..++..||+||+++.
T Consensus 463 ~~v~~A~aGd~v~l~l~~~~~~di~rGdvl~~~~~ 497 (611)
T 3izq_1 463 EETDVAIKGDFVTLKLRKAYPEDIQNGDLAASVDY 497 (611)
T ss_dssp CCCCCEETTCEEEEEESSCCTTSCCTTCEEBCSTT
T ss_pred cccceecCCCcceEEeeeccHhhCcceEEccCCCC
Confidence 89999999999999 34 467899999998765
No 27
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.98 E-value=9e-34 Score=308.82 Aligned_cols=302 Identities=23% Similarity=0.255 Sum_probs=229.0
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCc
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 168 (608)
+.++|+++||+|||||||+++|+.... . ....+|+|++.....+.+++..++|||||||.+|
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v--------~----------~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f 64 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKV--------A----------SGEAGGITQHIGAYHVETENGMITFLDTPGHAAF 64 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHH--------S----------BTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCC--------c----------cccCCCeeEeEEEEEEEECCEEEEEEECCCcHHH
Confidence 568999999999999999999973211 0 1123678888888888888899999999999999
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCCcHHHHHHHHHHhhCCccEEEeccCCC
Q 007325 169 TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGA 248 (608)
Q Consensus 169 ~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~pi~~ 248 (608)
...+.+++..+|++|+|+|+++|+.+|+.++|..+...++|+++|+||+|+..++.+++.+++.
T Consensus 65 ~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~~v~~~l~---------------- 128 (501)
T 1zo1_I 65 TSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELS---------------- 128 (501)
T ss_dssp TTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCCCTTCCCC----------------
T ss_pred HHHHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCHHHHHHHHH----------------
Confidence 9999999999999999999999999999999999999999999999999997654211100000
Q ss_pred CCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHHhcCCCCCHHHHHHHHHhh
Q 007325 249 EDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKG 328 (608)
Q Consensus 249 ~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l~~~~~~~~el~~~l~~~ 328 (608)
. ..+..+
T Consensus 129 ------------~----------------------------------------------------~~~~~~--------- 135 (501)
T 1zo1_I 129 ------------Q----------------------------------------------------YGILPE--------- 135 (501)
T ss_dssp ------------C----------------------------------------------------CCCCTT---------
T ss_pred ------------H----------------------------------------------------hhhhHH---------
Confidence 0 000000
Q ss_pred cccCcceeeeeeccCCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccchhccccCCCCCeEEEEEEeeecCCCceEEE
Q 007325 329 TIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTF 408 (608)
Q Consensus 329 ~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~~G~la~ 408 (608)
..+..+|++++||++|.|+++|++.|......+. ...+++.|+.+.|++.+.+++.|.+++
T Consensus 136 -~~~~~~~~v~vSAktG~gI~eLle~I~~~~~~~~------------------~~~~~~~~~~~~V~e~~~d~g~G~v~~ 196 (501)
T 1zo1_I 136 -EWGGESQFVHVSAKAGTGIDELLDAILLQAEVLE------------------LKAVRKGMASGAVIESFLDKGRGPVAT 196 (501)
T ss_dssp -CCSSSCEEEECCTTTCTTCTTHHHHTTTTCCCST------------------TTSCCCSBCEEEEEEEEECSSSSEEEE
T ss_pred -HhCCCccEEEEeeeeccCcchhhhhhhhhhhhhc------------------cccccccccccceEEEEEeCCcEEEEE
Confidence 0112368999999999999999999975421110 112357889999999999999999999
Q ss_pred EEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCeeecCCEEEEcCCCcc-cccceeccCCCCc----------
Q 007325 409 VRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDT-ITGETLCDADHPI---------- 477 (608)
Q Consensus 409 ~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~-~~GdtL~~~~~~~---------- 477 (608)
+||++|+|++||.|.+.+. .+++..+.+....++++|.||+.+.|.|++++ ..||+++...++.
T Consensus 197 ~~V~~Gtlk~Gd~v~~g~~-----~~kVr~i~~~~g~~v~~a~~g~~V~i~gl~~~~~~Gd~~~~~~~~~~a~~~~~~r~ 271 (501)
T 1zo1_I 197 VLVREGTLHKGDIVLCGFE-----YGRVRAMRNELGQEVLEAGPSIPVEILGLSGVPAAGDEVTVVRDEKKAREVALYRQ 271 (501)
T ss_dssp EEEEESBCCTTCEEEEEBS-----SCEEEEECCTTTTSEEEECCSSCSSSEEECSCCCTTEEEEEECSSCTTBCSSCBTT
T ss_pred EEEEeeEEecCCEEEEccc-----eeEEEEEEecCCCcCcEeccCCcEEEeCCCCCCCCCCEEEecCCHHHHHHHHHHHH
Confidence 9999999999999987542 23444444444467899999999999999884 7899997432210
Q ss_pred --------------ccCCCC--C---CCceEEEEEEeCCCCCHHHHHHHHHHHHHhCCeeEEE
Q 007325 478 --------------LLERMD--F---PDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFS 521 (608)
Q Consensus 478 --------------~l~~~~--~---~~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDPsl~v~ 521 (608)
.++.+. + ..+.+.+.|.+...+..+.|.++|.+|..+++.+.+-
T Consensus 272 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ivkad~~gs~ea~~~~l~~~~~~~~~~~v~ 334 (501)
T 1zo1_I 272 GKFREVKLARQQKSKLENMFANMTEGEVHEVNIVLKADVQGSVEAISDSLLKLSTDEVKVKII 334 (501)
T ss_dssp CCCCSHHHHHHHHHHHSSTTTSCSSCCCCCCCCBCCCSCHHHHHHHHHHHTTTTCCCSBCCCC
T ss_pred HHHHHHHHhhhhhhcHHHHHhhhhccCCceEEEEEEECCcCCHHHHHHHHHhhcccccceEEE
Confidence 112211 1 3456888899999999999999999998877766654
No 28
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.98 E-value=5e-31 Score=283.49 Aligned_cols=256 Identities=22% Similarity=0.321 Sum_probs=185.0
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEee---------------c
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW---------------N 153 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~---------------~ 153 (608)
...+|+++||+|||||||+++|+ + ...|....|.++|+|+...+....+ .
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~---g------------~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~ 71 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALT---G------------VWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCP 71 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHH---S------------CCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCT
T ss_pred CceEEEEEcCCCCCHHHHHHHHh---C------------CccccCcccccCCcEEEeccccccccccccccccccccccc
Confidence 45799999999999999999995 2 1245667888999999877655433 1
Q ss_pred --------CeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCC-chhHHHHHHHHHhcCC-CEEEEEeCCCcCCCc
Q 007325 154 --------KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-EPQSETVWRQADKYGV-PRICFVNKMDRLGAN 223 (608)
Q Consensus 154 --------~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~-~~~t~~~~~~~~~~~~-p~ivviNK~D~~~~~ 223 (608)
...++|||||||.+|...+.+++..+|++|+|+|++++. +.|+.+++..+...++ |+++|+||+|+...+
T Consensus 72 ~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~ 151 (408)
T 1s0u_A 72 NCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEK 151 (408)
T ss_dssp TSCCBCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTT
T ss_pred ccCcccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHH
Confidence 168999999999999999999999999999999999998 8999999988887776 688999999987643
Q ss_pred H-HHHHHHHHHhhCCccEEEeccCCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhh
Q 007325 224 F-FRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVEL 302 (608)
Q Consensus 224 ~-~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~ 302 (608)
. ....+++++
T Consensus 152 ~~~~~~~~i~~--------------------------------------------------------------------- 162 (408)
T 1s0u_A 152 QAEENYEQIKE--------------------------------------------------------------------- 162 (408)
T ss_dssp TTTTHHHHHHH---------------------------------------------------------------------
T ss_pred HHHHHHHHHHH---------------------------------------------------------------------
Confidence 1 111111111
Q ss_pred cHHHHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeeccCCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccchhcc
Q 007325 303 DDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLER 382 (608)
Q Consensus 303 dd~l~e~~l~~~~~~~~el~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~ 382 (608)
++.+ . ...-+|++.+||++|.|+++|++.|.+.+|.|..
T Consensus 163 -------~l~~--------------~--~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~~~------------------ 201 (408)
T 1s0u_A 163 -------FVKG--------------T--IAENAPIIPISAHHEANIDVLLKAIQDFIPTPKR------------------ 201 (408)
T ss_dssp -------HHTT--------------S--TTTTCCEEEC------CHHHHHHHHHHHSCCCCC------------------
T ss_pred -------HHhh--------------c--CCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCcc------------------
Confidence 1110 0 0123589999999999999999999999997743
Q ss_pred ccCCCCCeEEEEEEeee--------cCCCceEEEEEEecceeCCCCEEEeCCCC------------ceeecceEEEeecC
Q 007325 383 AASDDEPFAGLAFKIMS--------DPFVGSLTFVRVYAGTLSAGSYVLNANKG------------KKERIGRLLEMHAN 442 (608)
Q Consensus 383 ~~~~~~p~~~~V~K~~~--------d~~~G~la~~RV~sG~l~~g~~v~~~~~~------------~~~ki~~i~~~~g~ 442 (608)
+.+.|+.+.|...+. ++++|.++.+||.+|+|++||.|...+.+ ...+|.+|...
T Consensus 202 --~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~--- 276 (408)
T 1s0u_A 202 --DPDATPRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTKIVSLAAG--- 276 (408)
T ss_dssp --CTTSCCEEEEEEEECCCCSSCCGGGCCCCEEEEEEEESCEETTCEEEEEEEEEECCTTCCEEEEEEEECCEEEET---
T ss_pred --cCCCCeEEEEEEEEeecCCCcccccCceeEEEEEEEECeEecCCEEEEcCCcccccccccccccceeEEEEEEEC---
Confidence 135788888887763 34578899999999999999999876532 14678777642
Q ss_pred ceeecCeeecCCEEEEcC-----C--CcccccceeccCCC
Q 007325 443 SREDVKVALAGDIIALAG-----L--KDTITGETLCDADH 475 (608)
Q Consensus 443 ~~~~v~~a~aGdIv~i~g-----l--~~~~~GdtL~~~~~ 475 (608)
..++++|.|||+|++.. + +++..|++|+.++.
T Consensus 277 -~~~~~~a~~G~~v~~~~~~~~~~~~~~~~~G~vl~~~~~ 315 (408)
T 1s0u_A 277 -NTILRKAHPGGLIGVGTTLDPYLTKSDALTGSVVGLPGT 315 (408)
T ss_dssp -TEEESEECSSSCEEEECSSCGGGTGGGTTTTCEEESTTC
T ss_pred -CEEcCEEeCCCeEEEEeccCcccchhhccceeEEECCCC
Confidence 46899999999999932 2 24778999998754
No 29
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.97 E-value=1e-30 Score=280.69 Aligned_cols=270 Identities=20% Similarity=0.249 Sum_probs=192.1
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEee-----cCeeEEEEeC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-----NKHRINIIDT 162 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~-----~~~~i~liDT 162 (608)
+...+|+++|++|||||||+++|+..... ...+... .+.......+..++++.......+.+ ....++||||
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt 82 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTS-KKLGYAE--TNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA 82 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCC-SSSEEEE--EEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccc-cccCccc--cceeeccccccccceecccccccccccccccccceEEEEEC
Confidence 34569999999999999999999632111 1111110 01111111222344443332211111 2278999999
Q ss_pred CCCCCchHHHHHHHHhcCeEEEEEcCCCCC-chhHHHHHHHHHhcCC-CEEEEEeCCCcCCCc-HHHHHHHHHHhhCCcc
Q 007325 163 PGHVDFTLEVERALRVLDGAICLFDSVAGV-EPQSETVWRQADKYGV-PRICFVNKMDRLGAN-FFRTRDMIVTNLGAKP 239 (608)
Q Consensus 163 PG~~df~~~~~~~l~~~D~~i~VvDa~~g~-~~~t~~~~~~~~~~~~-p~ivviNK~D~~~~~-~~~~~~~i~~~l~~~~ 239 (608)
|||.+|...+..++..+|++|+|+|+.++. ..|+.+++..+...++ |+++|+||+|+...+ ..+..+++++.
T Consensus 83 PGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~----- 157 (403)
T 3sjy_A 83 PGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQF----- 157 (403)
T ss_dssp CCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHH-----
T ss_pred CCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHHHHH-----
Confidence 999999999999999999999999999997 8999999998888776 889999999987542 11111111111
Q ss_pred EEEeccCCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHHhcCCCCCHH
Q 007325 240 LVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEE 319 (608)
Q Consensus 240 ~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l~~~~~~~~ 319 (608)
+.
T Consensus 158 -----------------------------------------------------------------------l~------- 159 (403)
T 3sjy_A 158 -----------------------------------------------------------------------TK------- 159 (403)
T ss_dssp -----------------------------------------------------------------------HT-------
T ss_pred -----------------------------------------------------------------------HH-------
Confidence 10
Q ss_pred HHHHHHHhhcccCcceeeeeeccCCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccchhccccCCCCCeEEEEEEeee
Q 007325 320 TIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMS 399 (608)
Q Consensus 320 el~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~ 399 (608)
.. ....+|++++||++|.|+++|++.|.+++|.|.. +.+.|+.+.|.+.+.
T Consensus 160 -------~~--~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~~--------------------~~~~~~~~~v~~~~~ 210 (403)
T 3sjy_A 160 -------GT--WAENVPIIPVSALHKINIDSLIEGIEEYIKTPYR--------------------DLSQKPVMLVIRSFD 210 (403)
T ss_dssp -------TS--TTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCCC--------------------CTTSCCEEEEEEEEC
T ss_pred -------hh--CCCCCEEEEEECCCCcChHHHHHHHHHhCCCCCC--------------------CCCCCcEEEEEEEEe
Confidence 00 0123689999999999999999999999988754 236789999988764
Q ss_pred --------cCCCceEEEEEEecceeCCCCEEEeCCCCc------------eeecceEEEeecCceeecCeeecCCEEEEc
Q 007325 400 --------DPFVGSLTFVRVYAGTLSAGSYVLNANKGK------------KERIGRLLEMHANSREDVKVALAGDIIALA 459 (608)
Q Consensus 400 --------d~~~G~la~~RV~sG~l~~g~~v~~~~~~~------------~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~ 459 (608)
++++|.++++||.+|++++||.|.+.+.++ ..+|.+|.. ...++++|.|||+|++.
T Consensus 211 v~~~~~~~~~~~G~v~~g~v~~G~~~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~----~~~~~~~a~~G~~v~~~ 286 (403)
T 3sjy_A 211 VNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIRF----GDEEFKEAKPGGLVAIG 286 (403)
T ss_dssp CCCTTCCSSSCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEE----TTEEESEECSSSCEEEE
T ss_pred ecCCCcccccCcCcEEEEEEEeCEEecCCEEEEeCCcccccccccccccccEEEEEEEE----CCEEcCEEeCCCEEEEE
Confidence 445899999999999999999999866543 357777764 34789999999999983
Q ss_pred -----CC--CcccccceeccCCCC
Q 007325 460 -----GL--KDTITGETLCDADHP 476 (608)
Q Consensus 460 -----gl--~~~~~GdtL~~~~~~ 476 (608)
++ +++..|++|+.++.+
T Consensus 287 l~~~~~~~~~d~~~G~vl~~~~~~ 310 (403)
T 3sjy_A 287 TYLDPSLTKADNLLGSIITLADAE 310 (403)
T ss_dssp ESSCHHHHGGGTTTTCEEEETTCC
T ss_pred eccccccchhhhccccEEeCCCCC
Confidence 22 357789999987643
No 30
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.97 E-value=1.6e-31 Score=292.49 Aligned_cols=261 Identities=23% Similarity=0.301 Sum_probs=192.4
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCc
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 168 (608)
+..+|+++||+|+|||||+++|+... ....+|..+.|+++|+|++.....+.++++.++|||||||.+|
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~-----------~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~ 86 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIA-----------STSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADL 86 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC-------------------------------CCCEEEETTEEEEECCCSSHHHH
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCC-----------cccccccccccccCccEEecceEEEEECCEEEEEEECCChHHH
Confidence 45799999999999999999996211 1234677888999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCCc-HHHHHHHHHHhhCCccEEEeccCC
Q 007325 169 TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGAN-FFRTRDMIVTNLGAKPLVVQLPVG 247 (608)
Q Consensus 169 ~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~-~~~~~~~i~~~l~~~~~~~~~pi~ 247 (608)
...+..++..+|++|+|||+++|++.|+.+++..+...++|+++|+||+|+...+ ++.+.++++
T Consensus 87 ~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~--------------- 151 (482)
T 1wb1_A 87 IRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMK--------------- 151 (482)
T ss_dssp HHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHH---------------
Confidence 9999999999999999999999999999999999999999999999999987521 111111111
Q ss_pred CCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHHhcCCCCCHHHHHHHHHh
Q 007325 248 AEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRK 327 (608)
Q Consensus 248 ~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l~~~~~~~~el~~~l~~ 327 (608)
+.+..
T Consensus 152 ---------------------------------------------------------------------------~~l~~ 156 (482)
T 1wb1_A 152 ---------------------------------------------------------------------------SILQS 156 (482)
T ss_dssp ---------------------------------------------------------------------------HHHHH
T ss_pred ---------------------------------------------------------------------------HHHhh
Confidence 11111
Q ss_pred hcccCcceeeeeeccCCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccchhccccCCCCCeEEEEEEeeecCCCceEE
Q 007325 328 GTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLT 407 (608)
Q Consensus 328 ~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~~G~la 407 (608)
. ......|++.+||++|.|+++|++.|.+.+|.|.... +.++|+.+.|..++..++.|.++
T Consensus 157 ~-~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~~~~~~~------------------~~~~~~~~~v~~v~~~~g~G~v~ 217 (482)
T 1wb1_A 157 T-HNLKNSSIIPISAKTGFGVDELKNLIITTLNNAEIIR------------------NTESYFKMPLDHAFPIKGAGTVV 217 (482)
T ss_dssp S-SSGGGCCEEECCTTTCTTHHHHHHHHHHHHHHSCCCC------------------CSSSCCBCBCSCEECCSSCCCEE
T ss_pred h-cccccceEEEEECcCCCCHHHHHHHHHHhhcCccccc------------------cccccccccceeEEEecCCceEE
Confidence 0 0001258899999999999999999999887552100 12467777777777788899999
Q ss_pred EEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCeeecCCEEEE--cCCC--ccccccee-ccC
Q 007325 408 FVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DTITGETL-CDA 473 (608)
Q Consensus 408 ~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~--~~~~GdtL-~~~ 473 (608)
.+||.+|++++||.|...+.+...+|..|... ..++++|.|||.|++ .|++ ++..||+| +.+
T Consensus 218 ~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~----~~~v~~a~~G~~v~~~l~~~~~~~i~~Gdvl~~~~ 284 (482)
T 1wb1_A 218 TGTINKGIVKVGDELKVLPINMSTKVRSIQYF----KESVMEAKAGDRVGMAIQGVDAKQIYRGXILTSKD 284 (482)
T ss_dssp CCCCCBSCCCSSEEECCTTTCCCEEECCBCGG----GSCBCCCCSSCCCCEECSSCCSSCCCSSCBCCCTT
T ss_pred EEEEEEeEEeeCCEEEECCCCcEEEEeEEEEC----CeEeeEecCCCEEEEEecCCCHhhccccceEecCC
Confidence 99999999999999999888877888887632 367899999999987 4654 47899999 544
No 31
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.97 E-value=2.2e-32 Score=300.23 Aligned_cols=257 Identities=21% Similarity=0.261 Sum_probs=200.8
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEee-cCeeEEEEeCCCCCC
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPGHVD 167 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPG~~d 167 (608)
+.+.|+++||+|||||||+++|..... ..+..+|+|.+.....+.+ ++..++|||||||.+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~------------------~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~ 64 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQV------------------AAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAA 64 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHH------------------HHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc------------------ccccCCceeEEEeEEEEEeCCCCEEEEEECCChHH
Confidence 457899999999999999999973321 1112356777777766666 567899999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCCcHHHHHHHHHHhhCCccEEEeccCC
Q 007325 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVG 247 (608)
Q Consensus 168 f~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~pi~ 247 (608)
|...+.++++.+|++|+|+|+.++..+|+.++|..+...++|+++|+||+|+..++.....+++.+. +.
T Consensus 65 f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~-~~---------- 133 (537)
T 3izy_P 65 FSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAY-DV---------- 133 (537)
T ss_dssp TTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHT-TS----------
T ss_pred HHHHHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhh-hh----------
Confidence 9999999999999999999999999999999999999999999999999999765421111111100 00
Q ss_pred CCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhhcHHHHHHHhcCCCCCHHHHHHHHHh
Q 007325 248 AEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRK 327 (608)
Q Consensus 248 ~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~dd~l~e~~l~~~~~~~~el~~~l~~ 327 (608)
+
T Consensus 134 --------------------------------------------------------------~----------------- 134 (537)
T 3izy_P 134 --------------------------------------------------------------V----------------- 134 (537)
T ss_dssp --------------------------------------------------------------C-----------------
T ss_pred --------------------------------------------------------------h-----------------
Confidence 0
Q ss_pred hcccCcceeeeeeccCCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccchhccccCCCCCeEEEEEEeeecCCCceEE
Q 007325 328 GTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLT 407 (608)
Q Consensus 328 ~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~~G~la 407 (608)
.-..+..+|++++||++|.|+++|++.|...++.+.. ..+++.|+.+.|++.+.+++.|.++
T Consensus 135 ~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~~~~~~------------------~~~~~~~~~~~V~e~~~~~g~G~V~ 196 (537)
T 3izy_P 135 CEDYGGDVQAVHVSALTGENMMALAEATIALAEMLEL------------------KADPTGAVEGTVIESFTDKGRGPVT 196 (537)
T ss_dssp CCCSSSSEEECCCCSSSSCSSHHHHHHHHHHHTTCCC------------------CCCSSSSEEEEEEEECCCTTCCCCE
T ss_pred HHhcCCCceEEEEECCCCCCchhHHHHHHHhhhcccc------------------cCCCCCCcceeEEEEEEeCCCceEE
Confidence 0001223689999999999999999999988764422 1235789999999999999999999
Q ss_pred EEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCeeecCCEEEEcCCCcc-cccceeccCCCC
Q 007325 408 FVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDT-ITGETLCDADHP 476 (608)
Q Consensus 408 ~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~-~~GdtL~~~~~~ 476 (608)
+++|.+|+|++||.|.... ...+|..|+...| .++++|.|||+|+|.|++++ ..||+|+..+++
T Consensus 197 ~g~V~~G~l~~Gd~v~~g~--~~~kVr~i~~~~g---~~v~~A~~G~~V~i~g~~~~~~~Gd~l~~~~~~ 261 (537)
T 3izy_P 197 TAIIQRGTLRKGSILVAGK--SWAKVRLMFDENG---RAVNEAYPSMPVGIIGWRDLPSAGDEILEVESE 261 (537)
T ss_dssp EEEEEEECCSSEEEECCSS--CCEEEEEEEECCC---CCSCCSCCSTTCCCCSSEEEEEEESSCCSCCSS
T ss_pred EEEEecCEEEcCCEEEeCC--ceEEEEEEEcCCC---CCCcEEcCCCEEEEECCCCCCCCCCEEEecCCh
Confidence 9999999999999985432 3356666654443 67999999999999999985 789999876443
No 32
>3e3x_A BIPA; MCSG,PSI2, structural genomics, protein struct initiative, midwest center for structural genomics, GTP-BIN nucleotide-binding; HET: MLZ MLY; 1.95A {Vibrio parahaemolyticus}
Probab=99.88 E-value=7e-23 Score=208.59 Aligned_cols=109 Identities=21% Similarity=0.411 Sum_probs=79.6
Q ss_pred EEcCCCcccccceeccCCCCcccCCCCCCCceEEEEEEeCCC----CC-----HHHHHHHHHHHHHhCCeeEEEEeCCCC
Q 007325 457 ALAGLKDTITGETLCDADHPILLERMDFPDPVIKVAIEPKTK----AD-----IDKMANGLIKLAQEDPSFHFSRDEEIN 527 (608)
Q Consensus 457 ~i~gl~~~~~GdtL~~~~~~~~l~~~~~~~Pv~~~aiep~~~----~d-----~~kL~~aL~~L~~eDPsl~v~~~~etg 527 (608)
++.||+++.+|||||+...+.+++++.+++|+++++|+|.+. .| ..+|.++|.+|.++||+|+|+.+++++
T Consensus 2 av~Gl~~~~iGDTl~~~~~p~~L~~~~~~ePvvs~~i~p~~~p~ag~d~~~vt~~kL~~aL~kl~~eDpsL~v~~~~~t~ 81 (332)
T 3e3x_A 2 NATGLGELKISDTICAQNAVEALPALSVDEPTVTMTFQVNTSPFAGXEGXFVTSRNILERLEKELVHNVALRVEQTDDPD 81 (332)
T ss_dssp ---------------------------CCCCCEEEEEECCCSTTTTSSCSBCSHHHHHHHHHHHHHHCTTCEEEECSSTT
T ss_pred CccCCCCCccCCEEcCCCCcccCCCCCCCCCEEEEEEEECCCCccccccccchHHHHHHHHHHHhccCCEEEEEEcCCCC
Confidence 578999999999999998888899999999999999999987 55 789999999999999999999999999
Q ss_pred cEEEEeeChhhHHHHHHHHHhhcCeEEEEecceEEEEEe
Q 007325 528 QTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRES 566 (608)
Q Consensus 528 e~vl~g~GelHLev~~~rL~~~f~vev~~s~p~V~yrET 566 (608)
|++|+|||||||||+++||+++ |+++.+++|+|+||||
T Consensus 82 ~~~v~G~GELHLeIl~ErLrrE-g~ev~v~~P~V~YrEt 119 (332)
T 3e3x_A 82 KFRVSGRGELHLSILIENMRRE-GFELAVSRPEVIIXEE 119 (332)
T ss_dssp EEEEEESSHHHHHHHHHHHHHH-TBCEEECCCEECCEEE
T ss_pred eEEEEeeCHHHHHHHHHHHHhc-CceEEEeCCEEEEEEE
Confidence 9999999999999999999999 9999999999999997
No 33
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.82 E-value=1.3e-19 Score=186.41 Aligned_cols=117 Identities=21% Similarity=0.175 Sum_probs=91.1
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCC-
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD- 167 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d- 167 (608)
+..+|+|+|++|+|||||+|+|+.....+ ... ..++|.......+.+++.+++||||||+.+
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~i---vs~--------------~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~ 68 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAP---ISP--------------RPQTTRKRLRGILTEGRRQIVFVDTPGLHKP 68 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSC---CCS--------------SSCCCCSCEEEEEEETTEEEEEEECCCCCCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceee---ecC--------------CCCceeEEEEEEEEeCCcEEEEecCccccch
Confidence 45689999999999999999997332211 000 112233333344567889999999999987
Q ss_pred -------chHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhc--CCCEEEEEeCCCcCCC
Q 007325 168 -------FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY--GVPRICFVNKMDRLGA 222 (608)
Q Consensus 168 -------f~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~--~~p~ivviNK~D~~~~ 222 (608)
|...+..+++.+|++++|+|++++....+..+++.+... ++|+++|+||+|+...
T Consensus 69 ~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~ 132 (301)
T 1wf3_A 69 MDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKY 132 (301)
T ss_dssp CSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSS
T ss_pred hhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCc
Confidence 667778889999999999999999888888888888877 8999999999998653
No 34
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.81 E-value=2.9e-19 Score=184.54 Aligned_cols=115 Identities=21% Similarity=0.287 Sum_probs=92.9
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeec-CeeEEEEeCCCCCC
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-KHRINIIDTPGHVD 167 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~-~~~i~liDTPG~~d 167 (608)
..-.|+|+|++|+|||||+|+|+..... . .....++|.......+.++ +.+++||||||+.+
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~---i--------------~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~ 71 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTKVS---I--------------ISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYE 71 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCS---C--------------CCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCcc---c--------------cCCCCCceeeEEEEEEecCCCCeEEEEECcCCCc
Confidence 3468999999999999999999732111 0 1112345666666667777 89999999999977
Q ss_pred ch----------HHHHHHHHhcCeEEEEEcCCCCCchhHHHH-HHHHHhcCCCEEEEEeCCCcC
Q 007325 168 FT----------LEVERALRVLDGAICLFDSVAGVEPQSETV-WRQADKYGVPRICFVNKMDRL 220 (608)
Q Consensus 168 f~----------~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~-~~~~~~~~~p~ivviNK~D~~ 220 (608)
+. ..+..+++.+|++|+|+|++++...++..+ ++.+...++|+++|+||+|+.
T Consensus 72 ~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~ 135 (308)
T 3iev_A 72 PKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKI 135 (308)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGS
T ss_pred cccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCC
Confidence 54 667788999999999999999999999888 677777899999999999986
No 35
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.81 E-value=2.9e-20 Score=199.14 Aligned_cols=119 Identities=21% Similarity=0.232 Sum_probs=91.0
Q ss_pred CCCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCe-eEEEEeCCC
Q 007325 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKH-RINIIDTPG 164 (608)
Q Consensus 86 ~~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~-~i~liDTPG 164 (608)
+....++|+|+|++|+|||||+|+|+... ....+..+|+|++.....+.+.+. .++||||||
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~-----------------~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG 92 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQN-----------------VSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPG 92 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC------------------------------CCCCEEEEEETTTEEEEEEECSS
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCC-----------------CCccCCCCCeeeeeEEEEEEECCCCeEEEEECcC
Confidence 44567899999999999999999995211 112234567788888888888765 899999999
Q ss_pred CCCchH-------HHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCCc
Q 007325 165 HVDFTL-------EVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGAN 223 (608)
Q Consensus 165 ~~df~~-------~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~ 223 (608)
+.+|.. .+..+++.+|++|+|+|+ +...++..++..+...++|+++|+||+|+...+
T Consensus 93 ~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~ 156 (423)
T 3qq5_A 93 LDDVGELGRLRVEKARRVFYRADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEK 156 (423)
T ss_dssp TTCCCTTCCCCHHHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCC
T ss_pred CCcccchhHHHHHHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCcc
Confidence 998743 356788889999999999 778889999999999999999999999987653
No 36
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.80 E-value=2.9e-19 Score=174.92 Aligned_cols=121 Identities=17% Similarity=0.151 Sum_probs=90.2
Q ss_pred CCCCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEe-ecCeeEEEEeCC
Q 007325 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY-WNKHRINIIDTP 163 (608)
Q Consensus 85 ~~~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~-~~~~~i~liDTP 163 (608)
.+....++|+++|++|+|||||+|+|+.... ... .....|+|.......+. +++..++|||||
T Consensus 24 ~~~~~~~~i~v~G~~~~GKSslin~l~~~~~-~~~---------------~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtp 87 (223)
T 4dhe_A 24 LPPTVQPEIAFAGRSNAGKSTAINVLCNQKR-LAF---------------ASKTPGRTQHINYFSVGPAAEPVAHLVDLP 87 (223)
T ss_dssp SCCCCSCEEEEEESCHHHHHHHHHHHTTCSS-SSC---------------TTCCCCSCCCEEEEEESCTTSCSEEEEECC
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCc-cee---------------ecCCCCcccceEEEEecCCCCCcEEEEcCC
Confidence 3445678999999999999999999963210 000 11123445555555554 567899999999
Q ss_pred CCCC----------chHHHHHHHHh---cCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCC
Q 007325 164 GHVD----------FTLEVERALRV---LDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (608)
Q Consensus 164 G~~d----------f~~~~~~~l~~---~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~ 221 (608)
|+.+ |...+..+++. +|++|+|+|+.++.......+++.+...++|+++|+||+|+..
T Consensus 88 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~ 158 (223)
T 4dhe_A 88 GYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLT 158 (223)
T ss_dssp CCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSC
T ss_pred CCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCC
Confidence 9754 24445555665 7889999999998888888888888889999999999999875
No 37
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.80 E-value=1.1e-20 Score=190.27 Aligned_cols=203 Identities=13% Similarity=0.113 Sum_probs=127.4
Q ss_pred CCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCC
Q 007325 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (608)
Q Consensus 87 ~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 166 (608)
.....+|+|+|++|+|||||+|+|+......... ...++|.......+.|++..++||||||+.
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~----------------~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~ 82 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKL----------------GSQTLTKTCSKSQGSWGNREIVIIDTPDMF 82 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCT----------------TSCCCCCSCEEEEEEETTEEEEEEECCGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCC----------------CCCceeeeeEEEEEEeCCCEEEEEECcCCC
Confidence 3445799999999999999999997433211110 011246666667788899999999999998
Q ss_pred Cch-----------HHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhc-----CCCEEEEEe-CCCcCCCcHHHHH-
Q 007325 167 DFT-----------LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY-----GVPRICFVN-KMDRLGANFFRTR- 228 (608)
Q Consensus 167 df~-----------~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~-----~~p~ivviN-K~D~~~~~~~~~~- 228 (608)
++. ..+..+++.+|++|+|+|++. +..+...+++.+... +.|.++|+| |+|+...++...+
T Consensus 83 ~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~~~~i~ 161 (260)
T 2xtp_A 83 SWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMDYMH 161 (260)
T ss_dssp GSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCccHHHHHH
Confidence 763 222335677999999999986 777777788877765 678888888 9999876654422
Q ss_pred -------HHHHHhhCCccEEE-eccC------CCCCCeeeEEeccccee-EEecCcCCCceeeeecCcH--hHHHHHHHH
Q 007325 229 -------DMIVTNLGAKPLVV-QLPV------GAEDNFKGVVDLVKMKA-IIWSGEELGAKFAYEDIPA--NLQKMAQEY 291 (608)
Q Consensus 229 -------~~i~~~l~~~~~~~-~~pi------~~~~~~~g~idl~~~~~-~~~~~~~~g~~~~~~~~~~--~~~~~~~~~ 291 (608)
.++.+.++....+. .+|+ +..+-|..+++++..+. ++|..+ ...+.|. ......+++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 235 (260)
T 2xtp_A 162 DSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKNGDHYTNG------LYSLIQRSKCGPVGSDER 235 (260)
T ss_dssp HCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCH------HHHHC-------------
T ss_pred hcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCCCCcCCHH------HHHHHHHHHhhhhhHHHH
Confidence 22444444321111 0333 33344555666665544 455321 1223444 455566778
Q ss_pred HHHHHHHHHhhcHHHHHHHhc
Q 007325 292 RSQMIETIVELDDEAMESYLE 312 (608)
Q Consensus 292 r~~l~e~~~~~dd~l~e~~l~ 312 (608)
+..+.|.+++.+++++++|.+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~ 256 (260)
T 2xtp_A 236 VKEFKQSLIKYMETQRSYTAL 256 (260)
T ss_dssp CHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999999965
No 38
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.80 E-value=5.3e-19 Score=163.16 Aligned_cols=115 Identities=20% Similarity=0.209 Sum_probs=87.5
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCC--
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD-- 167 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d-- 167 (608)
+++|+++|.+|+|||||+++|+..... ..+...++|.......+.+++..+.+|||||+.+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 63 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKKRSA-----------------VVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGD 63 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHCCC----------------------------CCEEEEEEETTEEEEEEECGGGCSSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCee-----------------eccCCCCceecceEEEEEeCCceEEEEECCCCCCcc
Confidence 478999999999999999999732210 0111234466666667777888999999999987
Q ss_pred -----chHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCC
Q 007325 168 -----FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (608)
Q Consensus 168 -----f~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~ 221 (608)
+...+...++.+|++|+|+|++++.......+.+.+...++|+++|+||+|+..
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 122 (161)
T 2dyk_A 64 KWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPK 122 (161)
T ss_dssp SCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGG
T ss_pred chHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECccccc
Confidence 455566778899999999999998877777777777778999999999999864
No 39
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.79 E-value=1.8e-19 Score=169.33 Aligned_cols=118 Identities=33% Similarity=0.409 Sum_probs=93.2
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 167 (608)
++.++|+++|.+|+|||||+++|+...- .. ....++|.......+.+++..+.+|||||+.+
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~--~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 67 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKV--TE----------------QEAGGITQHIGAYQVTVNDKKITFLDTPGHEA 67 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCS--SC----------------SSCCSSSTTCCCCEEEETTEEEEESCCCSSSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCcc--cc----------------CCCCceeEeeeEEEEEeCCceEEEEECCCCHH
Confidence 4567999999999999999999972211 00 00122344444455667888999999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCCc
Q 007325 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGAN 223 (608)
Q Consensus 168 f~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~ 223 (608)
|......++..+|++|+|+|++++...+..+.+..+...++|+++|+||+|+...+
T Consensus 68 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~ 123 (178)
T 2lkc_A 68 FTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEAN 123 (178)
T ss_dssp SSCSCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSC
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCC
Confidence 88777778888999999999999888888888888888899999999999997654
No 40
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=2.6e-18 Score=163.41 Aligned_cols=112 Identities=18% Similarity=0.074 Sum_probs=79.0
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCc
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 168 (608)
+..+|+++|.+|+|||||+++|+... .. ... .|+......+.+++..+.+|||||+.+|
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~--~~---~~~----------------~t~~~~~~~~~~~~~~~~i~Dt~G~~~~ 73 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNE--VV---HTS----------------PTIGSNVEEIVINNTRFLMWDIGGQESL 73 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTS--CE---EEE----------------CCSCSSCEEEEETTEEEEEEECCC----
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCC--CC---cCc----------------CCCccceEEEEECCEEEEEEECCCCHhH
Confidence 34799999999999999999997221 11 110 0233334455667899999999999999
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCCCchhH-HHHHHHHHh----cCCCEEEEEeCCCcCC
Q 007325 169 TLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK----YGVPRICFVNKMDRLG 221 (608)
Q Consensus 169 ~~~~~~~l~~~D~~i~VvDa~~g~~~~t-~~~~~~~~~----~~~p~ivviNK~D~~~ 221 (608)
......+++.+|++|+|+|+++...... ...+..+.. .++|+++|+||+|+..
T Consensus 74 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 131 (187)
T 1zj6_A 74 RSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 131 (187)
T ss_dssp CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT
T ss_pred HHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC
Confidence 8888899999999999999997643322 223333333 5799999999999864
No 41
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.78 E-value=1.4e-18 Score=162.01 Aligned_cols=113 Identities=19% Similarity=0.042 Sum_probs=82.8
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCc
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 168 (608)
+..+|+++|.+|+|||||+++|+...- . .+ ..|+......+.+++..+.+|||||+.+|
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~--~------------~~-------~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~ 64 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEV--V------------TT-------IPTIGFNVETVTYKNLKFQVWDLGGLTSI 64 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSC--C------------CC-------CCCSSEEEEEEEETTEEEEEEEECCCGGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCC--C------------Cc-------CCcCccceEEEEECCEEEEEEECCCChhh
Confidence 457999999999999999999973211 0 00 01333334556677899999999999999
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCCCchhH-HHHHHHHHh----cCCCEEEEEeCCCcCCC
Q 007325 169 TLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK----YGVPRICFVNKMDRLGA 222 (608)
Q Consensus 169 ~~~~~~~l~~~D~~i~VvDa~~g~~~~t-~~~~~~~~~----~~~p~ivviNK~D~~~~ 222 (608)
...+..+++.+|++|+|+|+++...... ...+..+.. .++|+++|+||+|+...
T Consensus 65 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (171)
T 1upt_A 65 RPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQA 123 (171)
T ss_dssp GGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred hHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCC
Confidence 8888888999999999999997643322 222333322 58999999999998653
No 42
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.78 E-value=5.6e-19 Score=177.47 Aligned_cols=111 Identities=21% Similarity=0.259 Sum_probs=87.2
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCch
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~ 169 (608)
+++|+++|.+|+|||||+|+|+ |.....+. .+|+|+......+.+++..+.||||||+.++.
T Consensus 1 m~kI~lvG~~n~GKSTL~n~L~---g~~~~v~~---------------~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~ 62 (256)
T 3iby_A 1 MTHALLIGNPNCGKTTLFNALT---NANQRVGN---------------WPGVTVEKKTGEFLLGEHLIEITDLPGVYSLV 62 (256)
T ss_dssp -CEEEEEESTTSSHHHHHHHHH---TTSEEEEE---------------CTTSSSEEEEEEEEETTEEEEEEECCCCSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHH---CCCCCccC---------------CCCceEEEEEEEEEECCeEEEEEeCCCccccc
Confidence 3689999999999999999995 32222222 24678888888888899999999999999876
Q ss_pred H----------HHHHHH--HhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcC
Q 007325 170 L----------EVERAL--RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (608)
Q Consensus 170 ~----------~~~~~l--~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~ 220 (608)
. ....++ +.+|++|+|+|+++ ......++.++...++|+++|+||+|+.
T Consensus 63 ~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~pvilv~NK~Dl~ 123 (256)
T 3iby_A 63 ANAEGISQDEQIAAQSVIDLEYDCIINVIDACH--LERHLYLTSQLFELGKPVVVALNMMDIA 123 (256)
T ss_dssp ------CHHHHHHHHHHHHSCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSCEEEEEECHHHH
T ss_pred ccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCC--chhHHHHHHHHHHcCCCEEEEEEChhcC
Confidence 4 223344 67899999999998 4455667777888899999999999974
No 43
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.78 E-value=6.4e-18 Score=156.54 Aligned_cols=110 Identities=18% Similarity=0.086 Sum_probs=80.8
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchHH
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (608)
+|+++|++|+|||||+++|+...-. ++. -|+......+.+++..+.+|||||+.+|...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~--------------~~~-------~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 60 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIV--------------TTI-------PTIGFNVETVEYKNISFTVWDVGGQDKIRPL 60 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSS--------------CCC-------CCSSCCEEEEECSSCEEEEEECCCCGGGHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcC--------------ccc-------CcCceeEEEEEECCEEEEEEEcCCChhhHHH
Confidence 6999999999999999999743210 000 0223334456667899999999999999988
Q ss_pred HHHHHHhcCeEEEEEcCCCCCchhHH-HHHHHHHh----cCCCEEEEEeCCCcCCC
Q 007325 172 VERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK----YGVPRICFVNKMDRLGA 222 (608)
Q Consensus 172 ~~~~l~~~D~~i~VvDa~~g~~~~t~-~~~~~~~~----~~~p~ivviNK~D~~~~ 222 (608)
+..+++.+|++++|+|+++....... ..+..+.. .++|+++|+||+|+...
T Consensus 61 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 116 (164)
T 1r8s_A 61 WRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116 (164)
T ss_dssp HHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC
Confidence 88899999999999999875332222 23333322 37899999999998653
No 44
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.77 E-value=4.4e-19 Score=182.59 Aligned_cols=115 Identities=19% Similarity=0.187 Sum_probs=86.3
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCC-C
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV-D 167 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~-d 167 (608)
+..+|+|+|++|+|||||+|+|+... ..... ...++|.......+.+++.+++++||||+. .
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~---~~i~s--------------~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~ 69 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK---ISITS--------------RKAQTTRHRIVGIHTEGAYQAIYVDTPGLHME 69 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS---EEECC--------------CCSSCCSSCEEEEEEETTEEEEEESSSSCCHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC---ccccC--------------CCCCcceeeEEEEEEECCeeEEEEECcCCCcc
Confidence 34689999999999999999997321 11100 012234333344567788999999999997 3
Q ss_pred c--------hHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCC
Q 007325 168 F--------TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (608)
Q Consensus 168 f--------~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~ 221 (608)
. ...+..+++.+|++++|+|+++ +..++..+++.+...+.|+++|+||+|+..
T Consensus 70 ~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~ 130 (301)
T 1ega_A 70 EKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQ 130 (301)
T ss_dssp HHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCC
T ss_pred chhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCc
Confidence 2 2223456678899999999988 888998888888888999999999999865
No 45
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.77 E-value=6.5e-18 Score=161.03 Aligned_cols=115 Identities=19% Similarity=0.153 Sum_probs=83.7
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 167 (608)
++..+|+++|.+|+|||||+++|+.... .. ++ ..|+......+.+.+..+.||||||+.+
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~--~~-----------~~-------~~t~~~~~~~~~~~~~~~~l~Dt~G~~~ 79 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQF--NE-----------DM-------IPTVGFNMRKITKGNVTIKLWDIGGQPR 79 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCC--CC-----------SC-------CCCCSEEEEEEEETTEEEEEEEECCSHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCC--CC-----------cc-------CCCCceeEEEEEeCCEEEEEEECCCCHh
Confidence 3457999999999999999999973211 10 00 0133333445667889999999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCCCchhH-HHHHHHHHh----cCCCEEEEEeCCCcCCC
Q 007325 168 FTLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK----YGVPRICFVNKMDRLGA 222 (608)
Q Consensus 168 f~~~~~~~l~~~D~~i~VvDa~~g~~~~t-~~~~~~~~~----~~~p~ivviNK~D~~~~ 222 (608)
|...+..+++.+|++|+|+|+++...... ...+..+.. .++|+++|+||+|+...
T Consensus 80 ~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 139 (188)
T 1zd9_A 80 FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA 139 (188)
T ss_dssp HHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred HHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC
Confidence 98888999999999999999987533222 223333322 58999999999998653
No 46
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.77 E-value=4.4e-18 Score=162.59 Aligned_cols=119 Identities=15% Similarity=0.252 Sum_probs=83.8
Q ss_pred CCCCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCC
Q 007325 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG 164 (608)
Q Consensus 85 ~~~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 164 (608)
.+..+.++|+++|.+|+|||||+++|+.... ... .....|.|.......+ +..+.+|||||
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~---------------~~~~~~~t~~~~~~~~---~~~~~l~Dt~G 78 (195)
T 1svi_A 18 YPEGGLPEIALAGRSNVGKSSFINSLINRKN-LAR---------------TSSKPGKTQTLNFYII---NDELHFVDVPG 78 (195)
T ss_dssp SCCSCCCEEEEEEBTTSSHHHHHHHHHTC-----------------------------CCEEEEEE---TTTEEEEECCC
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHhCCCC-ccc---------------cCCCCCceeeEEEEEE---CCcEEEEECCC
Confidence 3445678999999999999999999972210 000 0111233443333322 34799999999
Q ss_pred C----------CCchHHHHHHHHhc---CeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCC
Q 007325 165 H----------VDFTLEVERALRVL---DGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (608)
Q Consensus 165 ~----------~df~~~~~~~l~~~---D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (608)
+ ..|...+..+++.+ |++++|+|++++.......+++.+...++|+++|+||+|+...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~ 149 (195)
T 1svi_A 79 YGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPK 149 (195)
T ss_dssp BCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCG
T ss_pred CCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCh
Confidence 4 34555566667776 9999999999988888887888888889999999999998754
No 47
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.77 E-value=1.1e-18 Score=189.04 Aligned_cols=118 Identities=18% Similarity=0.239 Sum_probs=89.5
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 167 (608)
...++|+++|++|+|||||+|+|+.... . ..+...|+|.+.....+.+++..++||||||+.+
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~---~--------------~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~ 235 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEER---V--------------IVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRK 235 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTT---E--------------EEC---------CCEEEEETTEEEEETTHHHHTC
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCc---e--------------eecCCCCceeeeeEEEEEECCeEEEEEECCCcCc
Confidence 3568999999999999999999972211 0 1122356788888888888999999999999843
Q ss_pred ----------chHH-HHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCC
Q 007325 168 ----------FTLE-VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (608)
Q Consensus 168 ----------f~~~-~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (608)
|... ...+++.+|++|+|+|++++...++..++..+...++|+++|+||+|+...
T Consensus 236 ~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~ 301 (436)
T 2hjg_A 236 KGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDK 301 (436)
T ss_dssp BTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCC
T ss_pred CccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCCCc
Confidence 3322 345888999999999999999999998888888899999999999998753
No 48
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.77 E-value=2.2e-18 Score=165.08 Aligned_cols=118 Identities=22% Similarity=0.157 Sum_probs=84.3
Q ss_pred CCCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCC
Q 007325 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (608)
Q Consensus 86 ~~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 165 (608)
+....++|+++|.+|+|||||+++|+.... ... ++. .|+......+.+.+..+.||||||+
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~---~~~---------~~~-------~t~~~~~~~~~~~~~~~~i~Dt~G~ 73 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQS---SSK---------HIT-------ATVGYNVETFEKGRVAFTVFDMGGA 73 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCCC----------------CCC-------CCSSEEEEEEEETTEEEEEEEECCS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcCCC---ccc---------ccc-------cccceeEEEEEeCCEEEEEEECCCC
Confidence 445668999999999999999999962111 000 000 1333334455678899999999999
Q ss_pred CCchHHHHHHHHhcCeEEEEEcCCCCCchhHH-HHHHHHHhc-----------CCCEEEEEeCCCcCCC
Q 007325 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADKY-----------GVPRICFVNKMDRLGA 222 (608)
Q Consensus 166 ~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~-~~~~~~~~~-----------~~p~ivviNK~D~~~~ 222 (608)
.+|...+..+++.+|++|+|+|+++....... ..+..+... ++|+++|+||+|+...
T Consensus 74 ~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 142 (199)
T 4bas_A 74 KKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA 142 (199)
T ss_dssp GGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC
T ss_pred HhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC
Confidence 99998888889999999999999986543332 333444333 8999999999998754
No 49
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.77 E-value=1.3e-17 Score=159.85 Aligned_cols=114 Identities=20% Similarity=0.121 Sum_probs=78.2
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 167 (608)
.+..+|+++|++|+|||||+++|+. +... ++ ..|+......+.+++..+.+|||||+.+
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~--~~~~------------~~-------~~t~~~~~~~~~~~~~~~~i~Dt~G~~~ 85 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL--GEIV------------TT-------IPTIGFNVETVEYKNICFTVWDVGGQDK 85 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS--SCCE------------EE-------EEETTEEEEEEEETTEEEEEEECC----
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh--CCcc------------cc-------CCcCceeEEEEEECCEEEEEEECCCCHh
Confidence 3457899999999999999999951 1110 00 0133333445667889999999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCCCchhHH-HHHHHHHh----cCCCEEEEEeCCCcCCC
Q 007325 168 FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK----YGVPRICFVNKMDRLGA 222 (608)
Q Consensus 168 f~~~~~~~l~~~D~~i~VvDa~~g~~~~t~-~~~~~~~~----~~~p~ivviNK~D~~~~ 222 (608)
|...+..+++.+|++|+|+|+++....... ..+..+.. .++|+++|+||+|+...
T Consensus 86 ~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 145 (192)
T 2b6h_A 86 IRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA 145 (192)
T ss_dssp -CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC
Confidence 988888899999999999999876433222 22333322 37999999999998653
No 50
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.77 E-value=1.9e-17 Score=157.03 Aligned_cols=114 Identities=19% Similarity=0.113 Sum_probs=82.3
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 167 (608)
....+|+++|.+|+|||||+++|... .. ... . .|+......+.+++..+.+|||||+.+
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~--~~---~~~------------~----~t~g~~~~~~~~~~~~l~i~Dt~G~~~ 72 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE--DI---SHI------------T----PTQGFNIKSVQSQGFKLNVWDIGGQRK 72 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS--CC---EEE------------E----EETTEEEEEEEETTEEEEEEECSSCGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC--CC---Ccc------------c----CcCCeEEEEEEECCEEEEEEECCCCHH
Confidence 44579999999999999999999521 10 000 0 022222345566789999999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCCCchhHH-HHHHHHH----hcCCCEEEEEeCCCcCCC
Q 007325 168 FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQAD----KYGVPRICFVNKMDRLGA 222 (608)
Q Consensus 168 f~~~~~~~l~~~D~~i~VvDa~~g~~~~t~-~~~~~~~----~~~~p~ivviNK~D~~~~ 222 (608)
|...+..+++.+|++++|+|+++....... ..+..+. ..++|+++|+||+|+...
T Consensus 73 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 132 (181)
T 1fzq_A 73 IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA 132 (181)
T ss_dssp GHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTC
T ss_pred HHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccC
Confidence 999999999999999999999875433322 2223222 257899999999998654
No 51
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.76 E-value=3.8e-18 Score=162.73 Aligned_cols=115 Identities=16% Similarity=0.096 Sum_probs=82.2
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 167 (608)
.+..+|+++|.+|+|||||+++|+...... .. ...|+......+.+++..+.+|||||+.+
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~---~~----------------~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~ 79 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQS---QN----------------ILPTIGFSIEKFKSSSLSFTVFDMSGQGR 79 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCC---SS----------------CCCCSSEEEEEEECSSCEEEEEEECCSTT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCC---CC----------------cCCccceeEEEEEECCEEEEEEECCCCHH
Confidence 345799999999999999999996221000 00 01133344455667789999999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCCCchhH-HHHHHHHH-h-----cCCCEEEEEeCCCcCC
Q 007325 168 FTLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQAD-K-----YGVPRICFVNKMDRLG 221 (608)
Q Consensus 168 f~~~~~~~l~~~D~~i~VvDa~~g~~~~t-~~~~~~~~-~-----~~~p~ivviNK~D~~~ 221 (608)
|...+..+++.+|++|+|+|+++...... ...+..+. . .++|+++|+||+|+..
T Consensus 80 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 140 (190)
T 2h57_A 80 YRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD 140 (190)
T ss_dssp TGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT
T ss_pred HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc
Confidence 98888889999999999999987532222 12233332 2 4799999999999864
No 52
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.76 E-value=2e-18 Score=175.26 Aligned_cols=110 Identities=22% Similarity=0.322 Sum_probs=85.3
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchH
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~ 170 (608)
.+|+++|++|+|||||+|+|+ |.....+. ..|+|+......+.+.+..+.+|||||+.+|..
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~---g~~~~v~~---------------~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~ 65 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLT---GSRQRVGN---------------WAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTT 65 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHH---TTCEEEEE---------------CTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC
T ss_pred cEEEEECCCCCCHHHHHHHHh---CCCcccCC---------------CCCeeEEEEEEEEEeCCCceEEEECcCCCcccc
Confidence 689999999999999999996 32222222 246678888888888889999999999988762
Q ss_pred ---------HHH-HH--HHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcC
Q 007325 171 ---------EVE-RA--LRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (608)
Q Consensus 171 ---------~~~-~~--l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~ 220 (608)
.+. .+ .+.+|++|+|+|+++ ......++.++...++|+++|+||+|+.
T Consensus 66 ~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~p~ivv~NK~Dl~ 125 (274)
T 3i8s_A 66 ISSQTSLDEQIACHYILSGDADLLINVVDASN--LERNLYLTLQLLELGIPCIVALNMLDIA 125 (274)
T ss_dssp ----CCHHHHHHHHHHHHTCCSEEEEEEEGGG--HHHHHHHHHHHHHHTCCEEEEEECHHHH
T ss_pred ccccCCHHHHHHHHHHhhcCCCEEEEEecCCC--hHHHHHHHHHHHhcCCCEEEEEECccch
Confidence 111 12 268899999999997 3455566677788899999999999974
No 53
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.76 E-value=3.2e-18 Score=186.33 Aligned_cols=119 Identities=18% Similarity=0.229 Sum_probs=92.7
Q ss_pred CCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCC-
Q 007325 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH- 165 (608)
Q Consensus 87 ~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~- 165 (608)
.....+|+++|++|+|||||+|+|+.... . ..+...|+|.+.....+.+++..++||||||+
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~---~--------------~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~ 254 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEER---V--------------IVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMR 254 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTT---E--------------EECC------CTTSEEEEETTEEEEETTGGGTT
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCc---c--------------ccCCCCCeEEEEEEEEEEECCceEEEEECCCCC
Confidence 34568999999999999999999972211 0 01123466787777888889999999999994
Q ss_pred ---------CCchHH-HHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCC
Q 007325 166 ---------VDFTLE-VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (608)
Q Consensus 166 ---------~df~~~-~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (608)
..|... ...+++.+|++|+|+|+++++..++..++..+...++|+++|+||+|+...
T Consensus 255 ~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~ 321 (456)
T 4dcu_A 255 KKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDK 321 (456)
T ss_dssp TBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCC
T ss_pred cCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCC
Confidence 445444 345789999999999999999999999999999999999999999998753
No 54
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.76 E-value=4e-18 Score=162.69 Aligned_cols=128 Identities=20% Similarity=0.121 Sum_probs=82.2
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEE-EEeecCeeEEEEeCCCCC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAAT-TTYWNKHRINIIDTPGHV 166 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~-~~~~~~~~i~liDTPG~~ 166 (608)
+...+|+++|++|+|||||++.+... ......+ +......+.+...|.+...... .+......+.+|||||+.
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~-~~~~~~~-----~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 85 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSK-VPEGRKG-----EMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQV 85 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHT-SCGGGBC-----CCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCC
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhh-ccccccc-----cccccccccccceeeeecccccccccCCceEEEEEeCCChH
Confidence 34579999999999999999766411 1100000 0000000000111111111111 222345689999999999
Q ss_pred CchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHh---------cCCCEEEEEeCCCcCC
Q 007325 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK---------YGVPRICFVNKMDRLG 221 (608)
Q Consensus 167 df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~---------~~~p~ivviNK~D~~~ 221 (608)
+|......+++.+|++|+|+|++++...+....+..+.. .++|+++|+||+|+..
T Consensus 86 ~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~ 149 (198)
T 3t1o_A 86 FYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPD 149 (198)
T ss_dssp SCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTT
T ss_pred HHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhccc
Confidence 999999999999999999999997765555555544332 5889999999999864
No 55
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.75 E-value=7.2e-18 Score=159.58 Aligned_cols=114 Identities=18% Similarity=0.049 Sum_probs=82.2
Q ss_pred CCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCC
Q 007325 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (608)
Q Consensus 87 ~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 166 (608)
..+..+|+++|.+|+|||||+++|+... . .... .|+......+.+++..+.+|||||+.
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~--~---~~~~----------------~t~~~~~~~~~~~~~~~~i~Dt~G~~ 76 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNE--V---VHTS----------------PTIGSNVEEIVINNTRFLMWDIGGQE 76 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTS--C---EEEE----------------CCSSSSCEEEEETTEEEEEEEESSSG
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCC--C---CccC----------------CcCceeeEEEEECCEEEEEEECCCCH
Confidence 3445799999999999999999997321 1 1110 12222334556678999999999999
Q ss_pred CchHHHHHHHHhcCeEEEEEcCCCCCchhH-HHHHHHHH----hcCCCEEEEEeCCCcCC
Q 007325 167 DFTLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQAD----KYGVPRICFVNKMDRLG 221 (608)
Q Consensus 167 df~~~~~~~l~~~D~~i~VvDa~~g~~~~t-~~~~~~~~----~~~~p~ivviNK~D~~~ 221 (608)
+|...+..+++.+|++|+|+|+++...... ...+..+. ..++|+++|+||+|+..
T Consensus 77 ~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 136 (181)
T 2h17_A 77 SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 136 (181)
T ss_dssp GGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred hHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCccc
Confidence 998888888999999999999997643332 23334333 26799999999999865
No 56
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.75 E-value=1.2e-17 Score=159.17 Aligned_cols=118 Identities=14% Similarity=0.123 Sum_probs=84.2
Q ss_pred CCCCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCC
Q 007325 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG 164 (608)
Q Consensus 85 ~~~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 164 (608)
.+....++|+++|.+|+|||||+++|+... .... ....|.|...... ..+..+.+|||||
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~--~~~~---------------~~~~~~t~~~~~~---~~~~~~~i~Dt~G 77 (195)
T 3pqc_A 18 YPPPLKGEVAFVGRSNVGKSSLLNALFNRK--IAFV---------------SKTPGKTRSINFY---LVNSKYYFVDLPG 77 (195)
T ss_dssp CCCCTTCEEEEEEBTTSSHHHHHHHHHTSC--CSCC---------------CSSCCCCCCEEEE---EETTTEEEEECCC
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHcCc--cccc---------------cCCCCCccCeEEE---EECCcEEEEECCC
Confidence 344556899999999999999999997322 1100 0112233332222 2245789999999
Q ss_pred CC----------CchHHHHHHHHhc---CeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCC
Q 007325 165 HV----------DFTLEVERALRVL---DGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (608)
Q Consensus 165 ~~----------df~~~~~~~l~~~---D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (608)
+. .|......+++.+ |++++|+|+..+.......+++.+...++|+++|+||+|+...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~ 148 (195)
T 3pqc_A 78 YGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKM 148 (195)
T ss_dssp BSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCG
T ss_pred CccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCCh
Confidence 43 3445555566655 9999999999988888888888888889999999999998753
No 57
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.75 E-value=5.8e-18 Score=183.42 Aligned_cols=113 Identities=22% Similarity=0.289 Sum_probs=88.6
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCC---
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD--- 167 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d--- 167 (608)
++|+|+|.+|+|||||+|+|+.... . ..+...|+|.+.....+.|++..+.+|||||+..
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~---~--------------~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~ 64 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKK---A--------------IVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQ 64 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC-------------------------------CCSEEEEEETTEEEEEEECTTTTSSGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC---c--------------eecCCCCCccceeeEEEEECCeEEEEEECCCcccccc
Confidence 6899999999999999999962211 0 0122467888888999999999999999999875
Q ss_pred ------chHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcC
Q 007325 168 ------FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (608)
Q Consensus 168 ------f~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~ 220 (608)
+...+..+++.+|++|+|+|+.++.......+.+.+...++|+++|+||+|+.
T Consensus 65 ~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~ 123 (439)
T 1mky_A 65 DIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENL 123 (439)
T ss_dssp GCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSH
T ss_pred chHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCc
Confidence 34556778999999999999999998888888888888899999999999963
No 58
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.75 E-value=1.9e-17 Score=155.84 Aligned_cols=118 Identities=17% Similarity=0.132 Sum_probs=80.4
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 167 (608)
....+|+++|++|+|||||+++|+........ ....+.+.......+......+.+|||||+.+
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 73 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQ----------------ESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTS----------------CCCSCCSEEEEEEEETTEEEEEEEEECCCSGG
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCcC----------------CCCceeEEEEEEEEECCEEEEEEEEeCCCChh
Confidence 34578999999999999999999732111000 00111222222222222346899999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCCCchhH-HHHHHHHHhc---CCCEEEEEeCCCcCC
Q 007325 168 FTLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADKY---GVPRICFVNKMDRLG 221 (608)
Q Consensus 168 f~~~~~~~l~~~D~~i~VvDa~~g~~~~t-~~~~~~~~~~---~~p~ivviNK~D~~~ 221 (608)
|......+++.+|++|+|+|+++...... ...+..+... ++|+++|+||+|+..
T Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 131 (181)
T 2efe_B 74 YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLD 131 (181)
T ss_dssp GGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred hhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccc
Confidence 99989999999999999999987544333 2333444433 788999999999854
No 59
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.75 E-value=1.8e-17 Score=158.50 Aligned_cols=117 Identities=15% Similarity=0.095 Sum_probs=84.0
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 167 (608)
++..+|+++|.+|+|||||+++|+.... ... .....|.+.......+......+.+|||||+.+
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~--~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 84 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHF--DHN--------------ISPTIGASFMTKTVPCGNELHKFLIWDTAGQER 84 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCC--CTT--------------CCCCSSEEEEEEEEECSSSEEEEEEEEECCSGG
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCC--CCC--------------cCCCcceeEEEEEEEeCCEEEEEEEEcCCCchh
Confidence 3457999999999999999999973221 000 011123444444444444567899999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHHHh---cCCCEEEEEeCCCcC
Q 007325 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRL 220 (608)
Q Consensus 168 f~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~~~---~~~p~ivviNK~D~~ 220 (608)
|......+++.+|++|+|+|+++.........| ..+.. .++|+++|+||+|+.
T Consensus 85 ~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~ 141 (192)
T 2fg5_A 85 FHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLS 141 (192)
T ss_dssp GGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred hHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 999999999999999999999876543333333 33333 378999999999985
No 60
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.74 E-value=1.1e-17 Score=168.15 Aligned_cols=112 Identities=20% Similarity=0.197 Sum_probs=86.0
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCc
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 168 (608)
+..+|+++|++|+|||||+|+|+ |.....+. .+|+|+......+.+++..+.||||||+.+|
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~---g~~~~~~~---------------~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~ 65 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALT---GTKQYVAN---------------WPGVTVEKKEGVFTYKGYTINLIDLPGTYSL 65 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHH---TTCEEEEE---------------CTTSCCEEEEEEEEETTEEEEEEECCCCSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHH---CCCCcccC---------------CCCceEEEEEEEEEECCeEEEEEECCCcCcc
Confidence 34689999999999999999995 32222222 2467888888888888899999999999887
Q ss_pred hH------HHHHHH--HhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcC
Q 007325 169 TL------EVERAL--RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (608)
Q Consensus 169 ~~------~~~~~l--~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~ 220 (608)
.. .....+ ..+|++++|+|+++. ......+.++...++|+++|+||+|+.
T Consensus 66 ~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~--~~~~~~~~~l~~~~~pvilv~NK~Dl~ 123 (258)
T 3a1s_A 66 GYSSIDEKIARDYLLKGDADLVILVADSVNP--EQSLYLLLEILEMEKKVILAMTAIDEA 123 (258)
T ss_dssp CSSSHHHHHHHHHHHHSCCSEEEEEEETTSC--HHHHHHHHHHHTTTCCEEEEEECHHHH
T ss_pred CCCCHHHHHHHHHHhhcCCCEEEEEeCCCch--hhHHHHHHHHHhcCCCEEEEEECcCCC
Confidence 53 123333 478999999999973 334456677788899999999999974
No 61
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.74 E-value=1.9e-17 Score=153.78 Aligned_cols=116 Identities=15% Similarity=0.081 Sum_probs=81.2
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCch
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~ 169 (608)
..+|+++|++|+|||||+++|+.... ... .+...+.+.......+...+..+.+|||||+.+|.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~--~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~ 69 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQF--HEF--------------QESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYH 69 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC--CTT--------------CCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCC--CCC--------------CCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhh
Confidence 46899999999999999999973211 100 01112333333333333346789999999999999
Q ss_pred HHHHHHHHhcCeEEEEEcCCCCCchhHHH-HHHHHHh---cCCCEEEEEeCCCcCC
Q 007325 170 LEVERALRVLDGAICLFDSVAGVEPQSET-VWRQADK---YGVPRICFVNKMDRLG 221 (608)
Q Consensus 170 ~~~~~~l~~~D~~i~VvDa~~g~~~~t~~-~~~~~~~---~~~p~ivviNK~D~~~ 221 (608)
.....+++.+|++|+|+|+++........ .+..+.. .++|+++|+||+|+..
T Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~ 125 (170)
T 1r2q_A 70 SLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLAN 125 (170)
T ss_dssp GGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred hhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc
Confidence 99999999999999999998754333322 2333433 3688999999999753
No 62
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.74 E-value=2.7e-17 Score=154.31 Aligned_cols=118 Identities=17% Similarity=0.131 Sum_probs=82.0
Q ss_pred CCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCC
Q 007325 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (608)
Q Consensus 87 ~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 166 (608)
.++..+|+++|++|+|||||+++|+........ ....+.+.......+......+.+|||||+.
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 75 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADC----------------PHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSC----------------TTSCCCCEEEEEEEETTEEEEEEEEECTTGG
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCC----------------CCccceEEEEEEEEECCeEEEEEEEECCCCh
Confidence 345689999999999999999999733211000 0011223333333333334689999999999
Q ss_pred CchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHHHh---cCCCEEEEEeCCCcC
Q 007325 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRL 220 (608)
Q Consensus 167 df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~~~---~~~p~ivviNK~D~~ 220 (608)
+|......+++.+|++|+|+|+++.........| ..+.. .++|+++|+||+|+.
T Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 133 (179)
T 1z0f_A 76 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE 133 (179)
T ss_dssp GTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred HhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 9999999999999999999999976443333322 22332 578999999999985
No 63
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.74 E-value=1.8e-17 Score=158.42 Aligned_cols=111 Identities=15% Similarity=0.071 Sum_probs=81.7
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCch
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~ 169 (608)
..+|+++|++|+|||||+++|.... .. . ...|+......+.+++..+.+|||||+.+|.
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~--~~---~----------------~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 81 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDR--LA---T----------------LQPTWHPTSEELAIGNIKFTTFDLGGHIQAR 81 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSC--CC---C----------------CCCCCSCEEEEEEETTEEEEEEECCCSGGGT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC--CC---c----------------cccCCCCCeEEEEECCEEEEEEECCCCHHHH
Confidence 3589999999999999999997321 11 0 0113333445677788999999999999988
Q ss_pred HHHHHHHHhcCeEEEEEcCCCCCchhHH-HHHHHHH----hcCCCEEEEEeCCCcCC
Q 007325 170 LEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQAD----KYGVPRICFVNKMDRLG 221 (608)
Q Consensus 170 ~~~~~~l~~~D~~i~VvDa~~g~~~~t~-~~~~~~~----~~~~p~ivviNK~D~~~ 221 (608)
.....+++.+|++|+|+|+++....... ..+..+. ..++|+++|+||+|+..
T Consensus 82 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (190)
T 1m2o_B 82 RLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN 138 (190)
T ss_dssp TSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred HHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC
Confidence 7777788999999999999976443322 2233332 25799999999999875
No 64
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.74 E-value=3.7e-17 Score=153.46 Aligned_cols=115 Identities=16% Similarity=0.078 Sum_probs=79.7
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC---eeEEEEeCCCC
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK---HRINIIDTPGH 165 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~---~~i~liDTPG~ 165 (608)
+..+|+++|.+|+|||||+++|+..... .+....++.+.....+.+.+ ..+.+|||||+
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~------------------~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~ 66 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFG------------------KQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTT------------------HHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTC
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCC------------------CCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCC
Confidence 3468999999999999999999732210 01111112223334444544 78999999999
Q ss_pred CCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHHHh-----cCCC-EEEEEeCCCcCC
Q 007325 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK-----YGVP-RICFVNKMDRLG 221 (608)
Q Consensus 166 ~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~~~-----~~~p-~ivviNK~D~~~ 221 (608)
.+|......+++.+|++|+|+|+++.........| ..+.. .+.| +++|+||+|+..
T Consensus 67 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~ 129 (178)
T 2hxs_A 67 TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEH 129 (178)
T ss_dssp CTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGG
T ss_pred ccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccccc
Confidence 99998899999999999999999875443322222 33333 2677 688999999853
No 65
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.74 E-value=1.4e-17 Score=168.62 Aligned_cols=111 Identities=18% Similarity=0.229 Sum_probs=87.5
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCch
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~ 169 (608)
.++|+++|++|+|||||+|+|+ |.....+. .+|+|+......+.+++..+++|||||+.+|.
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~---g~~~~~~~---------------~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~ 64 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALT---GLRQHVGN---------------WPGVTVEKKEGIMEYREKEFLVVDLPGIYSLT 64 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHH---TTCEEEEE---------------CTTSSCEEEEEEEEETTEEEEEEECCCCSCCC
T ss_pred eeEEEEECCCCCCHHHHHHHHh---CCCcccCC---------------CCCeEEEeeEEEEEECCceEEEEeCCCccccc
Confidence 5799999999999999999995 33222222 24668888888889999999999999999875
Q ss_pred H------HHHHHH--HhcCeEEEEEcCCCCCchhHHHHHHHHHhcC-CCEEEEEeCCCcC
Q 007325 170 L------EVERAL--RVLDGAICLFDSVAGVEPQSETVWRQADKYG-VPRICFVNKMDRL 220 (608)
Q Consensus 170 ~------~~~~~l--~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~-~p~ivviNK~D~~ 220 (608)
. ....++ ..+|++|+|+|++++ ......+.++...+ +|+++|+||+|+.
T Consensus 65 ~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 122 (271)
T 3k53_A 65 AHSIDELIARNFILDGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKNIILVLNKFDLL 122 (271)
T ss_dssp SSCHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSEEEEEECHHHH
T ss_pred cCCHHHHHHHHhhhccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCCEEEEEEChhcC
Confidence 5 233333 468999999999984 45666777777778 9999999999964
No 66
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.74 E-value=9e-18 Score=159.30 Aligned_cols=113 Identities=21% Similarity=0.160 Sum_probs=82.1
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCc
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 168 (608)
+..+|+++|++|+|||||+++|+... ... +. .|+......+.+++..+.+|||||+.+|
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~-----~~~---------~~-------~t~~~~~~~~~~~~~~~~~~Dt~G~~~~ 75 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED-----VDT---------IS-------PTLGFNIKTLEHRGFKLNIWDVGGQKSL 75 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC-----CSS---------CC-------CCSSEEEEEEEETTEEEEEEEECCSHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC-----CCc---------cc-------ccCccceEEEEECCEEEEEEECCCCHhH
Confidence 45799999999999999999996211 000 00 1222334455667899999999999988
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCCCchhH-HHHHHHHHh----cCCCEEEEEeCCCcCCC
Q 007325 169 TLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK----YGVPRICFVNKMDRLGA 222 (608)
Q Consensus 169 ~~~~~~~l~~~D~~i~VvDa~~g~~~~t-~~~~~~~~~----~~~p~ivviNK~D~~~~ 222 (608)
...+..+++.+|++|+|+|+++...... ...+..+.. .++|+++|+||+|+...
T Consensus 76 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (186)
T 1ksh_A 76 RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA 134 (186)
T ss_dssp HTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCC
Confidence 8888888899999999999987643332 223333332 47999999999998653
No 67
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.74 E-value=2.6e-17 Score=157.43 Aligned_cols=118 Identities=21% Similarity=0.183 Sum_probs=82.2
Q ss_pred CCCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCC
Q 007325 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTP 163 (608)
Q Consensus 86 ~~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTP 163 (608)
+.....+|+++|.+|+|||||+++|+..... .+....++.+.....+.+++ ..+.+||||
T Consensus 22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~------------------~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~ 83 (192)
T 2il1_A 22 PADFKLQVIIIGSRGVGKTSLMERFTDDTFC------------------EACKSTVGVDFKIKTVELRGKKIRLQIWDTA 83 (192)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHCC--------------------------CCTTEEEEEEEEEETTEEEEEEEEEEC
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHhcCCCC------------------cCCCCccceeEEEEEEEECCeEEEEEEEeCC
Confidence 3455679999999999999999999521110 00011122333333444444 579999999
Q ss_pred CCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHHHh---cCCCEEEEEeCCCcCC
Q 007325 164 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 221 (608)
Q Consensus 164 G~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~~~---~~~p~ivviNK~D~~~ 221 (608)
|+.+|......+++.+|++|+|+|+++.........| ..+.. .++|+++|+||+|+..
T Consensus 84 G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~ 145 (192)
T 2il1_A 84 GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET 145 (192)
T ss_dssp CSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred CcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 9999999999999999999999999976544443333 33333 4789999999999853
No 68
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.74 E-value=2.6e-17 Score=158.25 Aligned_cols=118 Identities=17% Similarity=0.174 Sum_probs=77.8
Q ss_pred CCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCC
Q 007325 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (608)
Q Consensus 87 ~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 166 (608)
.++..+|+++|.+|+|||||+++|+.... .. . .....|.+.......+......+.||||||+.
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~--~~--~------------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 88 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEF--RE--N------------ISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCC--C------------------------CEEEEEEETTEEEEEEEEECTTCT
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCC--Cc--c------------CCCCccceeEEEEEEECCEEEEEEEEECCCCc
Confidence 34568999999999999999999973211 00 0 00111222222333333334679999999999
Q ss_pred CchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHHHh---cCCCEEEEEeCCCcC
Q 007325 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRL 220 (608)
Q Consensus 167 df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~~~---~~~p~ivviNK~D~~ 220 (608)
+|...+..+++.+|++|+|+|+++.........| ..+.. .++|+++|+||+|+.
T Consensus 89 ~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 89 RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIR 146 (199)
T ss_dssp TCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGH
T ss_pred chhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 9999999999999999999999875444333333 33332 379999999999975
No 69
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.74 E-value=2e-17 Score=154.31 Aligned_cols=110 Identities=22% Similarity=0.289 Sum_probs=78.0
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCch-
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT- 169 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~- 169 (608)
.+|+++|++|+|||||+++|+ +.....+ ...++|+......+.+++..+.+|||||+.+|.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~---~~~~~~~---------------~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 65 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALT---GENVYIG---------------NWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTA 65 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHH---CCSSSCC--------------------CCCCCEEEEEETTEEEEEEECCCCSCSSS
T ss_pred cEEEEECCCCCCHHHHHHHHh---CCCeecc---------------CCCCcceeeeEEEEEECCcEEEEEECCCcccCCC
Confidence 689999999999999999996 2111111 113456666666677788999999999998874
Q ss_pred -----HHHHHHHH--hcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcC
Q 007325 170 -----LEVERALR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (608)
Q Consensus 170 -----~~~~~~l~--~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~ 220 (608)
.....+++ .+|++++|+|+++. ......+..+...++|+++|+||+|+.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~i~v~D~~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 121 (165)
T 2wji_A 66 NSIDEIIARDYIINEKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLA 121 (165)
T ss_dssp SSHHHHHHHHHHHHHCCSEEEEEEETTCH--HHHHHHHHHHHHTTCCEEEEEECHHHH
T ss_pred cchhHHHHHHHHhcCCCCEEEEEecCCch--hHhHHHHHHHHhcCCCEEEEEEchHhc
Confidence 22334444 78999999999862 233344555666789999999999974
No 70
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.73 E-value=2.7e-17 Score=157.06 Aligned_cols=117 Identities=17% Similarity=0.123 Sum_probs=84.2
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCCCC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGH 165 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~ 165 (608)
+...+|+++|++|+|||||+++|+...... +....++.......+.+++ ..+.||||||+
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 75 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTE------------------SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCS------------------CCCCCSSEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCC------------------CCCCcccceEEEEEEEECCEEEEEEEEECCCc
Confidence 456799999999999999999997321110 1112234444445555555 67999999999
Q ss_pred CCchHHHHHHHHhcCeEEEEEcCCCCCchhHHH-HHHHHHh---cCCCEEEEEeCCCcCCC
Q 007325 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQADK---YGVPRICFVNKMDRLGA 222 (608)
Q Consensus 166 ~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~-~~~~~~~---~~~p~ivviNK~D~~~~ 222 (608)
.+|......+++.+|++|+|+|+++........ .+..+.. .++|+++|+||+|+...
T Consensus 76 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~ 136 (196)
T 3tkl_A 76 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 136 (196)
T ss_dssp GGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred HhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccc
Confidence 999999999999999999999999744322222 2233333 37899999999998643
No 71
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.73 E-value=2.1e-17 Score=159.15 Aligned_cols=111 Identities=18% Similarity=0.124 Sum_probs=76.9
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCch
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~ 169 (608)
..+|+++|++|+|||||+++|.. +... .+ ..|+......+.+++..+.+|||||+.+|.
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~--~~~~------------~~-------~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 83 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKD--DRLG------------QH-------VPTLHPTSEELTIAGMTFTTFDLGGHIQAR 83 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSC--C-------------------------CCCCCSCEEEEETTEEEEEEEECC----C
T ss_pred CcEEEEECCCCCCHHHHHHHHhc--CCCC------------cc-------CCCCCceeEEEEECCEEEEEEECCCcHhhH
Confidence 45899999999999999999951 1110 00 013333445667788999999999999988
Q ss_pred HHHHHHHHhcCeEEEEEcCCCCCchhHH-HHHHHHH----hcCCCEEEEEeCCCcCC
Q 007325 170 LEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQAD----KYGVPRICFVNKMDRLG 221 (608)
Q Consensus 170 ~~~~~~l~~~D~~i~VvDa~~g~~~~t~-~~~~~~~----~~~~p~ivviNK~D~~~ 221 (608)
..+..+++.+|++++|+|+++....... ..+..+. ..++|+++|+||+|+..
T Consensus 84 ~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 140 (198)
T 1f6b_A 84 RVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE 140 (198)
T ss_dssp CGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc
Confidence 8777888999999999999875433322 2233332 25799999999999865
No 72
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.73 E-value=4.1e-18 Score=162.24 Aligned_cols=113 Identities=17% Similarity=0.081 Sum_probs=80.8
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCc
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 168 (608)
+..+|+++|++|+|||||+++|+. +... . +. .|+......+.+++..+++|||||+.+|
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~--~~~~---~---------~~-------~t~~~~~~~~~~~~~~~~~~Dt~G~~~~ 79 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHL--GDVV---T---------TV-------PTVGVNLETLQYKNISFEVWDLGGQTGV 79 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC--SCCE---E---------EC-------SSTTCCEEEEEETTEEEEEEEECCSSSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHc--CCCC---C---------cC-------CCCceEEEEEEECCEEEEEEECCCCHhH
Confidence 346899999999999999999951 1110 0 00 0222334456667899999999999998
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCCCchhH-HHHHHHHHh----cCCCEEEEEeCCCcCCC
Q 007325 169 TLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK----YGVPRICFVNKMDRLGA 222 (608)
Q Consensus 169 ~~~~~~~l~~~D~~i~VvDa~~g~~~~t-~~~~~~~~~----~~~p~ivviNK~D~~~~ 222 (608)
...+..+++.+|++|+|+|+++...... ...+..+.. .++|+++|+||+|+...
T Consensus 80 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 138 (189)
T 2x77_A 80 RPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDA 138 (189)
T ss_dssp CCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCC
Confidence 7777778889999999999997643322 222333332 47899999999998654
No 73
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.73 E-value=6.6e-18 Score=159.55 Aligned_cols=114 Identities=21% Similarity=0.142 Sum_probs=78.8
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 167 (608)
++..+|+++|++|+|||||+++|+. +.. ... ..|+......+.+++..+.+|||||+.+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~--~~~---~~~----------------~~t~~~~~~~~~~~~~~~~i~Dt~G~~~ 74 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI--GEV---VTT----------------KPTIGFNVETLSYKNLKLNVWDLGGQTS 74 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC--SEE---EEE----------------CSSTTCCEEEEEETTEEEEEEEEC----
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc--CCc---Ccc----------------CCcCccceEEEEECCEEEEEEECCCCHh
Confidence 4567999999999999999999951 111 010 0122233445566789999999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCCCchhH-HHHHHHHH----hcCCCEEEEEeCCCcCCC
Q 007325 168 FTLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQAD----KYGVPRICFVNKMDRLGA 222 (608)
Q Consensus 168 f~~~~~~~l~~~D~~i~VvDa~~g~~~~t-~~~~~~~~----~~~~p~ivviNK~D~~~~ 222 (608)
|...+..+++.+|++++|+|+++...... ...+..+. ..++|+++|+||+|+...
T Consensus 75 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (183)
T 1moz_A 75 IRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA 134 (183)
T ss_dssp CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC
T ss_pred HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC
Confidence 88888888999999999999987643332 22333333 357899999999998653
No 74
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.73 E-value=5.3e-17 Score=156.67 Aligned_cols=117 Identities=19% Similarity=0.133 Sum_probs=80.7
Q ss_pred CCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCCC
Q 007325 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPG 164 (608)
Q Consensus 87 ~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG 164 (608)
.+...+|+++|.+|+|||||+++|+...- .. +....++.+.....+.+++ ..+.||||||
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~--~~----------------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G 87 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTGAF--SE----------------RQGSTIGVDFTMKTLEIQGKRVKLQIWDTAG 87 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------------------------CEEEEEEEETTEEEEEEEECCTT
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhCCC--CC----------------CCCCCcceEEEEEEEEECCEEEEEEEEECCC
Confidence 35568999999999999999999973211 00 0001112223333444555 5899999999
Q ss_pred CCCchHHHHHHHHhcCeEEEEEcCCCCCchhHH-HHHHHHHh---cCCCEEEEEeCCCcCC
Q 007325 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK---YGVPRICFVNKMDRLG 221 (608)
Q Consensus 165 ~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~-~~~~~~~~---~~~p~ivviNK~D~~~ 221 (608)
+.+|......+++.+|++|+|+|+++....... ..+..+.. .++|+++|+||+|+..
T Consensus 88 ~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~ 148 (201)
T 2hup_A 88 QERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSE 148 (201)
T ss_dssp CGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred cHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCcccc
Confidence 999999999999999999999999874332222 23333333 4689999999999853
No 75
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.73 E-value=4e-17 Score=151.72 Aligned_cols=116 Identities=16% Similarity=0.115 Sum_probs=81.4
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCch
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~ 169 (608)
..+|+++|++|+|||||+++|+..... .. .....|.+.......+......+.+|||||+.+|.
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~--~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~ 69 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFD--PN--------------INPTIGASFMTKTVQYQNELHKFLIWDTAGLERFR 69 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCC--TT--------------CCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGG
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCC--CC--------------CCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhh
Confidence 468999999999999999999732210 00 01112334333333333344789999999999999
Q ss_pred HHHHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHHHh---cCCCEEEEEeCCCcCC
Q 007325 170 LEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 221 (608)
Q Consensus 170 ~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~~~---~~~p~ivviNK~D~~~ 221 (608)
......++.+|++|+|+|+++.........| ..+.. .++|+++|+||+|+..
T Consensus 70 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~ 125 (170)
T 1z0j_A 70 ALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD 125 (170)
T ss_dssp GGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGG
T ss_pred cccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCcccc
Confidence 8889999999999999999976544443333 44433 3678999999999853
No 76
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.73 E-value=6.2e-17 Score=149.97 Aligned_cols=114 Identities=16% Similarity=0.114 Sum_probs=76.2
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchH
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~ 170 (608)
.+|+++|++|+|||||+++|+... ... .. .. + .+... .....+......+.+|||||+.+|..
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~--~~~--~~-~~-t----------~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~ 66 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGI--FVE--KY-DP-T----------IEDSY-RKQVEVDCQQCMLEILDTAGTEQFTA 66 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC--CCC--SC-CC-C----------SEEEE-EEEEESSSCEEEEEEEEECSSCSSTT
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC--CCC--CC-CC-C----------ccceE-EEEEEECCEEEEEEEEECCChHHHHH
Confidence 589999999999999999997321 100 00 00 0 01111 11112222356799999999999999
Q ss_pred HHHHHHHhcCeEEEEEcCCCCCchhH-HHHHHHHH----hcCCCEEEEEeCCCcCC
Q 007325 171 EVERALRVLDGAICLFDSVAGVEPQS-ETVWRQAD----KYGVPRICFVNKMDRLG 221 (608)
Q Consensus 171 ~~~~~l~~~D~~i~VvDa~~g~~~~t-~~~~~~~~----~~~~p~ivviNK~D~~~ 221 (608)
.....++.+|++++|+|+++...... ...+..+. ..++|+++|+||+|+..
T Consensus 67 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 122 (167)
T 1c1y_A 67 MRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122 (167)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGG
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccc
Confidence 99999999999999999986432222 12222232 24899999999999853
No 77
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.73 E-value=5.4e-17 Score=150.70 Aligned_cols=115 Identities=17% Similarity=0.202 Sum_probs=79.4
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchH
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~ 170 (608)
.+|+++|++|+|||||+++|+........ ....|.+.......+......+.+|||||+.+|..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 67 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENK----------------EPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFAS 67 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTC----------------CCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGG
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCC----------------CCccceeEEEEEEEECCEEEEEEEEECCCChhhhh
Confidence 58999999999999999999732211000 00112233333333322345899999999999999
Q ss_pred HHHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHHHh---cCCCEEEEEeCCCcCC
Q 007325 171 EVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 221 (608)
Q Consensus 171 ~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~~~---~~~p~ivviNK~D~~~ 221 (608)
....+++.+|++++|+|+++.........| ..+.. .++|+++|+||+|+..
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 122 (170)
T 1ek0_A 68 LAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQ 122 (170)
T ss_dssp GHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred hhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccc
Confidence 999999999999999999975443333222 33332 4789999999999864
No 78
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.73 E-value=4.3e-17 Score=156.96 Aligned_cols=118 Identities=18% Similarity=0.107 Sum_probs=81.9
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 167 (608)
+...+|+++|++|+|||||+++|+.... ... + ....|++.......+......+.||||||+.+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~-----------~---~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 69 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSF--TPA-----------F---VSTVGIDFKVKTIYRNDKRIKLQIWDTAGLER 69 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCC--CSC-----------C---CCCCSEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCC--CCC-----------c---CCccceeEEEEEEEECCeEEEEEEEECCCchh
Confidence 3457999999999999999999972211 000 0 00113333333333333356899999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHHHh---cCCCEEEEEeCCCcCC
Q 007325 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 221 (608)
Q Consensus 168 f~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~~~---~~~p~ivviNK~D~~~ 221 (608)
|...+..+++.+|++|+|+|+++.........| ..+.. .++|+++|+||+|+..
T Consensus 70 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (203)
T 1zbd_A 70 YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMED 127 (203)
T ss_dssp GHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTT
T ss_pred hcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCc
Confidence 999999999999999999999875443333223 33433 4789999999999864
No 79
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.73 E-value=4.4e-17 Score=153.93 Aligned_cols=115 Identities=17% Similarity=0.220 Sum_probs=77.8
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCCCC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGH 165 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~ 165 (608)
....+|+++|++|+|||||+++|+.... .. ++.+ ..+... ...+..++ ..+.+|||||+
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~--~~-----------~~~~---t~~~~~---~~~~~~~~~~~~l~i~Dt~G~ 76 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIF--VD-----------DYDP---TIEDSY---LKHTEIDNQWAILDVLDTAGQ 76 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCC--CS-----------CCCT---TCCEEE---EEEEEETTEEEEEEEEECCSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCC--CC-----------CCCC---Ccccee---EEEEEeCCcEEEEEEEECCCc
Confidence 3457999999999999999999973211 00 0000 001111 22233333 45677999999
Q ss_pred CCchHHHHHHHHhcCeEEEEEcCCCCCchhH-----HHHHHHHHhcCCCEEEEEeCCCcCC
Q 007325 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQS-----ETVWRQADKYGVPRICFVNKMDRLG 221 (608)
Q Consensus 166 ~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t-----~~~~~~~~~~~~p~ivviNK~D~~~ 221 (608)
.+|......+++.+|++++|+|+++...... ..+.+.....++|+++|+||+|+..
T Consensus 77 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 137 (183)
T 3kkq_A 77 EEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 137 (183)
T ss_dssp GGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCST
T ss_pred hhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchh
Confidence 9999888999999999999999997532222 2222223346889999999999864
No 80
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.72 E-value=8.1e-18 Score=182.08 Aligned_cols=114 Identities=24% Similarity=0.260 Sum_probs=84.4
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCC----
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV---- 166 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~---- 166 (608)
++|+|+|++|+|||||+|+|+.... ...+...|+|.+.....+.|++..+.+|||||+.
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~-----------------~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~ 66 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERI-----------------SIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDE 66 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEEC-----------------C-----------CEEEECTTCSSCCEEEC---------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc-----------------eeecCCCCCccceEEEEEEECCceEEEEECCCCCCcch
Confidence 6899999999999999999952110 0122346788888888899999999999999986
Q ss_pred ----CchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCC
Q 007325 167 ----DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (608)
Q Consensus 167 ----df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~ 221 (608)
.+...+..+++.+|++|+|+|+.++.......+++.+...++|+++|+||+|+..
T Consensus 67 ~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~ 125 (436)
T 2hjg_A 67 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTE 125 (436)
T ss_dssp CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC--
T ss_pred hHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCcc
Confidence 4667778899999999999999999999888888888888999999999999753
No 81
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.72 E-value=6.9e-17 Score=151.73 Aligned_cols=117 Identities=18% Similarity=0.197 Sum_probs=79.5
Q ss_pred CCCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCC
Q 007325 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTP 163 (608)
Q Consensus 86 ~~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTP 163 (608)
+..+..+|+++|++|+|||||+++|+...... ++.+ ..+... ...+.+++ ..+.+||||
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~-------------~~~~---t~~~~~---~~~~~~~~~~~~~~~~Dt~ 65 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVS-------------DYDP---TIEDSY---TKICSVDGIPARLDILDTA 65 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCS-------------SCCT---TCCEEE---EEEEEETTEEEEEEEEECC
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCcc-------------ccCC---CcCceE---EEEEEECCEEEEEEEEECC
Confidence 34556899999999999999999997331100 0000 011111 12333444 578999999
Q ss_pred CCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHH-HHHHH----HHhcCCCEEEEEeCCCcCC
Q 007325 164 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQ----ADKYGVPRICFVNKMDRLG 221 (608)
Q Consensus 164 G~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~-~~~~~----~~~~~~p~ivviNK~D~~~ 221 (608)
|+.+|......+++.+|++++|+|+++....... ..+.. ....++|+++|+||+|+..
T Consensus 66 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 128 (181)
T 2fn4_A 66 GQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLES 128 (181)
T ss_dssp CTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGG
T ss_pred CchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 9999988888899999999999999874322222 22222 2235889999999999853
No 82
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.72 E-value=1.7e-17 Score=158.02 Aligned_cols=119 Identities=15% Similarity=0.048 Sum_probs=82.3
Q ss_pred CCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCC
Q 007325 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (608)
Q Consensus 87 ~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 166 (608)
.+...+|+++|.+|+|||||+++|+....... + ....|++.......+......+.+|||||+.
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-------------~---~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 82 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPA-------------F---VSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCS-------------C---CCCCCCEEEEEEEEETTEEEEEEEEECCSCC
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCC-------------c---CCceeEEEEEEEEEECCeEEEEEEEeCCCcH
Confidence 34567999999999999999999973221100 0 0112333333333333345689999999999
Q ss_pred CchHHHHHHHHhcCeEEEEEcCCCCCchhHH-HHHHHHHh---cCCCEEEEEeCCCcCC
Q 007325 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK---YGVPRICFVNKMDRLG 221 (608)
Q Consensus 167 df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~-~~~~~~~~---~~~p~ivviNK~D~~~ 221 (608)
+|......+++.+|++|+|+|+++....... ..+..+.. .++|+++|+||+|+..
T Consensus 83 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 141 (189)
T 2gf9_A 83 RYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLED 141 (189)
T ss_dssp SSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred HHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc
Confidence 9988888889999999999999875433322 23344444 3789999999999853
No 83
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.72 E-value=1.6e-16 Score=153.01 Aligned_cols=116 Identities=18% Similarity=0.223 Sum_probs=79.7
Q ss_pred CCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCCC
Q 007325 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPG 164 (608)
Q Consensus 87 ~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG 164 (608)
..+..+|+++|++|+|||||+++|+.... .. ++ .+.+.......+.+++ ..+.||||||
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~--~~-----------~~------~~t~~~~~~~~~~~~~~~~~~~l~Dt~G 71 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEF--VE-----------DY------EPTKADSYRKKVVLDGEEVQIDILDTAG 71 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCC--CT-----------TC------CTTCCEEEEEEEEETTEEEEEEEEECCC
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCC--CC-----------CC------CCccceEEEEEEEECCEEEEEEEEcCCC
Confidence 34568999999999999999999973221 00 00 0001111122333444 5799999999
Q ss_pred CCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHHHh----cCCCEEEEEeCCCcCC
Q 007325 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK----YGVPRICFVNKMDRLG 221 (608)
Q Consensus 165 ~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~~~----~~~p~ivviNK~D~~~ 221 (608)
+.+|......+++.+|++++|+|+++.........| ..+.. .++|+++|+||+|+..
T Consensus 72 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 133 (206)
T 2bov_A 72 QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 133 (206)
T ss_dssp TTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGG
T ss_pred hhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccc
Confidence 999999999999999999999999874333222222 22322 3799999999999854
No 84
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.72 E-value=4e-17 Score=154.54 Aligned_cols=115 Identities=17% Similarity=0.171 Sum_probs=82.0
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCCCC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGH 165 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~ 165 (608)
++..+|+++|++|+|||||+++|+...... +....++.......+.+++ ..+.+|||||+
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 69 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKD------------------DSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 69 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCT------------------TCCCCSEEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCC------------------CCCCccceEEEEEEEEECCEEEEEEEEeCCCc
Confidence 456799999999999999999997322110 0011223333334444444 68999999999
Q ss_pred CCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHHH---hcCCCEEEEEeCCCcC
Q 007325 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQAD---KYGVPRICFVNKMDRL 220 (608)
Q Consensus 166 ~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~~---~~~~p~ivviNK~D~~ 220 (608)
.+|...+..+++.+|++|+|+|+++.........| ..+. ..++|+++|+||+|+.
T Consensus 70 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 128 (186)
T 2bme_A 70 ERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLD 128 (186)
T ss_dssp GGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred HHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 99999999999999999999999975443333333 2222 3578999999999985
No 85
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=9.7e-17 Score=149.25 Aligned_cols=115 Identities=16% Similarity=0.107 Sum_probs=76.8
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCch
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~ 169 (608)
..+|+++|++|+|||||+++|+.......... + .+.+.. ...........+.+|||||+.+|.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~------t----------~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~ 65 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIP------T----------VEDTYR-QVISCDKSICTLQITDTTGSHQFP 65 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCC------C----------SCEEEE-EEEEETTEEEEEEEEECCSCSSCH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCC------C----------ccccEE-EEEEECCEEEEEEEEECCCchhhH
Confidence 35899999999999999999973211000000 0 011111 111222234579999999999999
Q ss_pred HHHHHHHHhcCeEEEEEcCCCCCchh-HHHHHHHHHh-----cCCCEEEEEeCCCcCC
Q 007325 170 LEVERALRVLDGAICLFDSVAGVEPQ-SETVWRQADK-----YGVPRICFVNKMDRLG 221 (608)
Q Consensus 170 ~~~~~~l~~~D~~i~VvDa~~g~~~~-t~~~~~~~~~-----~~~p~ivviNK~D~~~ 221 (608)
.....+++.+|++++|+|+++..... ....+..+.. .++|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~ 123 (172)
T 2erx_A 66 AMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP 123 (172)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGG
T ss_pred HHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcccccc
Confidence 99999999999999999998643222 2233333433 3799999999999853
No 86
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.72 E-value=9.5e-17 Score=152.04 Aligned_cols=113 Identities=16% Similarity=0.186 Sum_probs=74.4
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCCCCCC
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVD 167 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~d 167 (608)
..+|+++|++|+|||||+++|+........ . +.+.......+.+++ ..+.+|||||+.+
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-----~--------------~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 64 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNHFVDEY-----D--------------PTIEDSYRKQVVIDGETCLLDILDTAGQEE 64 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCCCC-----C--------------TTCCEEEEEEEEETTEEEEEEEEECCCC--
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCCCCCCC-----C--------------CCchheEEEEEEECCcEEEEEEEECCCcHH
Confidence 458999999999999999999732211000 0 011111122233333 4578899999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHHHh----cCCCEEEEEeCCCcCC
Q 007325 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK----YGVPRICFVNKMDRLG 221 (608)
Q Consensus 168 f~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~~~----~~~p~ivviNK~D~~~ 221 (608)
|......+++.+|++++|+|+++.........| ..+.. .++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 123 (189)
T 4dsu_A 65 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 123 (189)
T ss_dssp -CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS
T ss_pred HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc
Confidence 999999999999999999999975333222222 22322 4799999999999864
No 87
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.72 E-value=3.8e-17 Score=153.70 Aligned_cols=113 Identities=17% Similarity=0.167 Sum_probs=80.4
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchH
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~ 170 (608)
.+|+|+|.+|+|||||+++|....... . ....++|.+.....+.+++..+.+|||||+.++..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~~~~--~---------------~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 67 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGREAAI--V---------------TDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASD 67 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSC--C---------------CSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcce--e---------------eCCCCceeceeeEEEEECCeEEEEEECCCcccchh
Confidence 579999999999999999996221100 0 01123455555556677888899999999976421
Q ss_pred H--------HHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhc---CCCEEEEEeCCCcC
Q 007325 171 E--------VERALRVLDGAICLFDSVAGVEPQSETVWRQADKY---GVPRICFVNKMDRL 220 (608)
Q Consensus 171 ~--------~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~---~~p~ivviNK~D~~ 220 (608)
. ...+++.+|++++|+|+++.........+..+... ++|+++|+||+|+.
T Consensus 68 ~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 128 (172)
T 2gj8_A 68 EVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADIT 128 (172)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCC
Confidence 1 23467899999999999976655555555555443 68999999999974
No 88
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.72 E-value=1.3e-17 Score=156.65 Aligned_cols=117 Identities=21% Similarity=0.178 Sum_probs=83.7
Q ss_pred CCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCCC
Q 007325 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPG 164 (608)
Q Consensus 87 ~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG 164 (608)
.+...+|+++|++|+|||||+++|+.... . .+...+++.......+.+++ ..+.+|||||
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~---~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G 67 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTF---S---------------GSYITTIGVDFKIRTVEINGEKVKLQIWDTAG 67 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---------------------CCTTTBSEEEEEEEEEETTEEEEEEEEEETT
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCC---C---------------CccCCCceeEEEEEEEEECCEEEEEEEEcCCC
Confidence 34568999999999999999999951110 0 11122334455555566666 6899999999
Q ss_pred CCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHHHh--cCCCEEEEEeCCCcCC
Q 007325 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK--YGVPRICFVNKMDRLG 221 (608)
Q Consensus 165 ~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~~~--~~~p~ivviNK~D~~~ 221 (608)
+.+|......+++.+|++|+|+|+++.........| ..+.. .++|+++|+||+|+..
T Consensus 68 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 127 (181)
T 3tw8_B 68 QERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPE 127 (181)
T ss_dssp GGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGG
T ss_pred chhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCch
Confidence 999888888889999999999999975444333323 33333 3589999999999754
No 89
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.72 E-value=3e-17 Score=166.22 Aligned_cols=110 Identities=20% Similarity=0.278 Sum_probs=81.6
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCch
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~ 169 (608)
..+|+++|++|+|||||+|+|. |.....+. ..|+|+......+.+ +..+.+|||||+.+|.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~---g~~~~v~~---------------~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~ 63 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLIT---GHNQRVGN---------------WPGVTVERKSGLVKK-NKDLEIQDLPGIYSMS 63 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH---CCCCCCCS---------------SSCCCCSCEEEECTT-CTTEEEEECCCCSCSS
T ss_pred ceEEEEECCCCCCHHHHHHHHH---CCCCcccC---------------CCCCcEEEEEEEEec-CCeEEEEECCCcCccC
Confidence 4689999999999999999995 32111111 136677666666666 7889999999998875
Q ss_pred ------HHHHHHHH--hcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcC
Q 007325 170 ------LEVERALR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (608)
Q Consensus 170 ------~~~~~~l~--~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~ 220 (608)
.....++. .+|++|+|+|+++. ......+.++...++|+++|+||+|+.
T Consensus 64 ~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~--e~~~~~~~~l~~~~~p~ilv~NK~Dl~ 120 (272)
T 3b1v_A 64 PYSPEAKVARDYLLSQRADSILNVVDATNL--ERNLYLTTQLIETGIPVTIALNMIDVL 120 (272)
T ss_dssp CSSHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTCSCEEEEEECHHHH
T ss_pred CCChHHHHHHHHHhcCCCCEEEEEecCCch--HhHHHHHHHHHhcCCCEEEEEEChhhC
Confidence 23344555 48999999999872 334445566777899999999999974
No 90
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.72 E-value=9e-17 Score=150.67 Aligned_cols=114 Identities=18% Similarity=0.172 Sum_probs=79.7
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCCCCCC
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVD 167 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~d 167 (608)
..+|+++|++|+|||||+++|+....... ....++.+.....+.+++ ..+.+|||||+.+
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~ 75 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDSFDNT------------------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 75 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSS------------------CCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCC------------------CCCceeeEEEEEEEEECCeEEEEEEEECCCcHH
Confidence 36899999999999999999973221100 011223333334444444 5899999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCCCchhHH-HHHHHHH---hcCCCEEEEEeCCCcCC
Q 007325 168 FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQAD---KYGVPRICFVNKMDRLG 221 (608)
Q Consensus 168 f~~~~~~~l~~~D~~i~VvDa~~g~~~~t~-~~~~~~~---~~~~p~ivviNK~D~~~ 221 (608)
|...+..+++.+|++|+|+|+++....... ..+..+. ..++|+++|+||+|+..
T Consensus 76 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 133 (179)
T 2y8e_A 76 FRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD 133 (179)
T ss_dssp GGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGG
T ss_pred HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccc
Confidence 999899999999999999999864332222 2222332 24789999999999853
No 91
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.72 E-value=7.7e-17 Score=149.02 Aligned_cols=112 Identities=18% Similarity=0.108 Sum_probs=76.2
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeec--CeeEEEEeCCCCCCc
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGHVDF 168 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG~~df 168 (608)
.+|+++|++|+|||||+++|+.... ... . .. + .+ +.. ...+..+ ...+.+|||||+.+|
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~--~~~--~-~~-~----------~~-~~~--~~~~~~~~~~~~~~l~D~~G~~~~ 64 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTF--IEK--Y-DP-T----------IE-DFY--RKEIEVDSSPSVLEILDTAGTEQF 64 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCC--CSC--C-CT-T----------CC-EEE--EEEEEETTEEEEEEEEECCCTTCC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCC--ccc--C-CC-C----------cc-eeE--EEEEEECCEEEEEEEEECCCchhh
Confidence 5899999999999999999973221 100 0 00 0 01 111 2223333 356999999999999
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCCCchhHH-HHHHHHH----hcCCCEEEEEeCCCcCC
Q 007325 169 TLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQAD----KYGVPRICFVNKMDRLG 221 (608)
Q Consensus 169 ~~~~~~~l~~~D~~i~VvDa~~g~~~~t~-~~~~~~~----~~~~p~ivviNK~D~~~ 221 (608)
.......++.+|++++|+|+++....... ..+..+. ..++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 122 (167)
T 1kao_A 65 ASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122 (167)
T ss_dssp HHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGG
T ss_pred HHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccc
Confidence 99999999999999999999974332222 2222222 24799999999999753
No 92
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.72 E-value=1.8e-16 Score=146.66 Aligned_cols=113 Identities=19% Similarity=0.224 Sum_probs=74.3
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCCCCCC
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVD 167 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~d 167 (608)
..+|+++|++|+|||||+++|+...- .. . ...+ .+.+. ...+.+++ ..+.+|||||+.+
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~--~~--~-~~~t-----------~~~~~---~~~~~~~~~~~~~~l~D~~G~~~ 64 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEF--VE--D-YEPT-----------KADSY---RKKVVLDGEEVQIDILDTAGQED 64 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC--CS--C-CCTT-----------CCEEE---EEEEEETTEEEEEEEEECCC---
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCcc--CC--C-CCCC-----------cceEE---EEEEEECCEEEEEEEEECCCcch
Confidence 36899999999999999999973221 00 0 0000 01111 12223333 5799999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCCCchhHHHH-HHHHHh----cCCCEEEEEeCCCcCC
Q 007325 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETV-WRQADK----YGVPRICFVNKMDRLG 221 (608)
Q Consensus 168 f~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~-~~~~~~----~~~p~ivviNK~D~~~ 221 (608)
|......+++.+|++++|+|+++......... +..+.. .++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 123 (168)
T 1u8z_A 65 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 123 (168)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGG
T ss_pred hHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccc
Confidence 99999999999999999999996433222222 222222 3799999999999854
No 93
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.72 E-value=2.6e-17 Score=155.53 Aligned_cols=116 Identities=17% Similarity=0.095 Sum_probs=61.4
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCCCC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGH 165 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~ 165 (608)
+...+|+++|++|+|||||+++|+..... .+....++.+.....+.+++ ..+.||||||+
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~------------------~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 67 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFN------------------STFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ 67 (183)
T ss_dssp SEEEEEEEECCCCC----------------------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCC------------------CCCCCcccceeEEEEEEECCEEEEEEEEcCCCC
Confidence 34579999999999999999999622110 01112233334444455555 78999999999
Q ss_pred CCchHHHHHHHHhcCeEEEEEcCCCCCchhHH-HHHHHHHh---cCCCEEEEEeCCCcCC
Q 007325 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK---YGVPRICFVNKMDRLG 221 (608)
Q Consensus 166 ~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~-~~~~~~~~---~~~p~ivviNK~D~~~ 221 (608)
.+|.......++.+|++|+|+|+++....... ..+..+.. .++|+++|+||+|+..
T Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (183)
T 2fu5_C 68 ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND 127 (183)
T ss_dssp ------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCS
T ss_pred hhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCc
Confidence 99988888888999999999999975433322 23333433 3789999999999864
No 94
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.72 E-value=1.2e-16 Score=149.70 Aligned_cols=115 Identities=16% Similarity=0.109 Sum_probs=80.1
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCCCC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGH 165 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~ 165 (608)
....+|+++|.+|+|||||+++|+...... +..+.++.......+.+++ ..+.+|||||+
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 66 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDT------------------QLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----------------------CCSEEEEEEEEEETTEEEEEEEEECCCC
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCCCC------------------CCCCceeeeEEEEEEEECCEEEEEEEEeCCCc
Confidence 345799999999999999999997321100 0011122233333444454 58999999999
Q ss_pred CCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHHHh-------cCCCEEEEEeCCCcC
Q 007325 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK-------YGVPRICFVNKMDRL 220 (608)
Q Consensus 166 ~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~~~-------~~~p~ivviNK~D~~ 220 (608)
.+|......+++.+|++++|+|+++.........| ..+.. .++|+++|+||+|+.
T Consensus 67 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 129 (177)
T 1wms_A 67 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS 129 (177)
T ss_dssp GGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS
T ss_pred hhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc
Confidence 99998888899999999999999975433332222 22221 578999999999986
No 95
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.71 E-value=6.4e-17 Score=154.45 Aligned_cols=119 Identities=14% Similarity=0.052 Sum_probs=82.8
Q ss_pred CCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCC
Q 007325 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (608)
Q Consensus 87 ~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 166 (608)
.+...+|+++|++|+|||||+++|+........ ....|.+.......+......+.||||||+.
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 85 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDS----------------RTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSC----------------CCCSSEEEEEEEEEETTEEEEEEEEEESCCC
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCC----------------CCccceeEEEEEEEECCEEEEEEEEeCCCch
Confidence 455689999999999999999999733211000 0011233333333333345789999999999
Q ss_pred CchHHHHHHHHhcCeEEEEEcCCCCCchhHH-HHHHHHHh---cCCCEEEEEeCCCcCC
Q 007325 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK---YGVPRICFVNKMDRLG 221 (608)
Q Consensus 167 df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~-~~~~~~~~---~~~p~ivviNK~D~~~ 221 (608)
+|......+++.+|++|+|+|+++....... ..+..+.. .++|+++|+||+|+..
T Consensus 86 ~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~ 144 (193)
T 2oil_A 86 RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQ 144 (193)
T ss_dssp TTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGG
T ss_pred hhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCccc
Confidence 9998899999999999999999875433222 23333433 3789999999999854
No 96
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.71 E-value=2.5e-17 Score=157.20 Aligned_cols=118 Identities=18% Similarity=0.074 Sum_probs=83.9
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 167 (608)
+...+|+++|.+|+|||||+++|+......... ...|++.......+......+.||||||+.+
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~----------------~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 84 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFV----------------STVGIDFKVKTVYRHEKRVKLQIWDTAGQER 84 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEE----------------EEETTTEEEEEEEETTTTEEEEEECHHHHHH
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccC----------------CCeeeEEEEEEEEECCEEEEEEEEeCCChHH
Confidence 456799999999999999999997432211100 0112233334444444678899999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCCCchhH-HHHHHHHHh---cCCCEEEEEeCCCcCC
Q 007325 168 FTLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK---YGVPRICFVNKMDRLG 221 (608)
Q Consensus 168 f~~~~~~~l~~~D~~i~VvDa~~g~~~~t-~~~~~~~~~---~~~p~ivviNK~D~~~ 221 (608)
|......+++.+|++|+|+|+++...... ...+..+.. .++|+++|+||+|+..
T Consensus 85 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 142 (191)
T 3dz8_A 85 YRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEE 142 (191)
T ss_dssp CHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred HHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 99999999999999999999986433222 223334433 4789999999999853
No 97
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.71 E-value=4.5e-17 Score=169.65 Aligned_cols=112 Identities=21% Similarity=0.138 Sum_probs=78.3
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCch
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~ 169 (608)
..+|+|+|++|+|||||+++|+. +... .. ..|+......+.+.+..++||||||+.+|.
T Consensus 165 ~~kI~ivG~~~vGKSsLl~~l~~--~~~~------------~~-------~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 223 (329)
T 3o47_A 165 EMRILMVGLDAAGKTTILYKLKL--GEIV------------TT-------IPTIGFNVETVEYKNISFTVWDVGGQDKIR 223 (329)
T ss_dssp SEEEEEEESTTSSHHHHHHHTCS--SCCE------------EE-------EEETTEEEEEEEETTEEEEEEECC-----C
T ss_pred cceEEEECCCCccHHHHHHHHhC--CCCC------------Cc-------ccccceEEEEEecCcEEEEEEECCCCHhHH
Confidence 34899999999999999999951 1110 00 014555556677889999999999999999
Q ss_pred HHHHHHHHhcCeEEEEEcCCCCCchhH--HHHHHHHHh---cCCCEEEEEeCCCcCCC
Q 007325 170 LEVERALRVLDGAICLFDSVAGVEPQS--ETVWRQADK---YGVPRICFVNKMDRLGA 222 (608)
Q Consensus 170 ~~~~~~l~~~D~~i~VvDa~~g~~~~t--~~~~~~~~~---~~~p~ivviNK~D~~~~ 222 (608)
.....+++.+|++|+|+|+++...... ..+...+.. .++|+++|+||+|+...
T Consensus 224 ~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~ 281 (329)
T 3o47_A 224 PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 281 (329)
T ss_dssp CSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcc
Confidence 999999999999999999986433322 222223322 38899999999998754
No 98
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.71 E-value=2.3e-16 Score=148.93 Aligned_cols=114 Identities=18% Similarity=0.211 Sum_probs=77.9
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCCCCC
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHV 166 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~ 166 (608)
+..+|+++|++|+|||||+++|+.... .. . .. ..+.......+.+++ ..+.||||||+.
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~--~-~~--------------~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 77 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEF--VE--D-YE--------------PTKADSYRKKVVLDGEEVQIDILDTAGQE 77 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC--CC--S-CC--------------TTCCEEEEEEEEETTEEEEEEEEECCCTT
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCC--CC--c-CC--------------CccceEEEEEEEECCEEEEEEEEECCCCc
Confidence 457999999999999999999973221 00 0 00 001111112233333 579999999999
Q ss_pred CchHHHHHHHHhcCeEEEEEcCCCCCchhHHH-HHHHHH----hcCCCEEEEEeCCCcCC
Q 007325 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQAD----KYGVPRICFVNKMDRLG 221 (608)
Q Consensus 167 df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~-~~~~~~----~~~~p~ivviNK~D~~~ 221 (608)
+|......+++.+|++++|+|+++........ .+..+. ..++|+++|+||+|+..
T Consensus 78 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 137 (187)
T 2a9k_A 78 DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 137 (187)
T ss_dssp CCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGG
T ss_pred ccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 99999999999999999999998643322222 222222 23799999999999854
No 99
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.71 E-value=1e-16 Score=152.26 Aligned_cols=118 Identities=17% Similarity=0.047 Sum_probs=80.0
Q ss_pred CCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeec-----------Ce
Q 007325 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-----------KH 155 (608)
Q Consensus 87 ~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~-----------~~ 155 (608)
.+...+|+++|++|+|||||+++|+.... ... . .. ..+.+... ...+... ..
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~--~--~~----------t~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 70 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKF--NSK--F--IT----------TVGIDFRE-KRVVYRANGPDGAVGRGQRI 70 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCC--CCS--C--CC----------CCSEEEEE-EEEEECTTSCCCSSCCCEEE
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCC--CcC--c--cc----------ccceeeee-EEEEEecCCcccccccCcEE
Confidence 34567999999999999999999973211 000 0 00 01111110 1122222 35
Q ss_pred eEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHH-HHHHHHHh----cCCCEEEEEeCCCcCC
Q 007325 156 RINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK----YGVPRICFVNKMDRLG 221 (608)
Q Consensus 156 ~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~-~~~~~~~~----~~~p~ivviNK~D~~~ 221 (608)
.+.+|||||+.+|......+++.+|++|+|+|+++....... ..+..+.. .++|+++|+||+|+..
T Consensus 71 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 141 (195)
T 3bc1_A 71 HLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLED 141 (195)
T ss_dssp EEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGG
T ss_pred EEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 899999999999999999999999999999999875443332 22333333 5899999999999853
No 100
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.71 E-value=1.7e-16 Score=151.83 Aligned_cols=64 Identities=25% Similarity=0.293 Sum_probs=52.0
Q ss_pred eeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHHH-hcCCCEEEEEeCCC
Q 007325 155 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQAD-KYGVPRICFVNKMD 218 (608)
Q Consensus 155 ~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~~-~~~~p~ivviNK~D 218 (608)
..+.||||||+.+|......+++.+|++|+|+|++++........| ..+. ..++|+++|+||+|
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D 158 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKID 158 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTT
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCC
Confidence 7899999999999999999999999999999999986544443333 3333 35689999999999
No 101
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.71 E-value=8.8e-17 Score=150.31 Aligned_cols=115 Identities=15% Similarity=0.068 Sum_probs=70.5
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCC--
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD-- 167 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d-- 167 (608)
..+|+++|++|+|||||+++|+.... .. .....|.+.......+......+.+|||||+.+
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~---~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 66 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQE---RD--------------LHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLD 66 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC----------------------CCCSSSSEEEEEEEETTEEEEEEEECCC------
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCC---cc--------------ccCccccceeEEEEEECCEEEEEEEEecCCCCccc
Confidence 46899999999999999999962111 00 001123333322222222235789999999988
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCCCchhHH-HHHHHHHhc----CCCEEEEEeCCCcCC
Q 007325 168 FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADKY----GVPRICFVNKMDRLG 221 (608)
Q Consensus 168 f~~~~~~~l~~~D~~i~VvDa~~g~~~~t~-~~~~~~~~~----~~p~ivviNK~D~~~ 221 (608)
+.......++.+|++++|+|+++....... ..+..+... ++|+++|+||+|+..
T Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~ 125 (175)
T 2nzj_A 67 KSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLAR 125 (175)
T ss_dssp -CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTT
T ss_pred hhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhcc
Confidence 455555667889999999999864433322 233444443 799999999999864
No 102
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.71 E-value=1.5e-16 Score=154.65 Aligned_cols=125 Identities=21% Similarity=0.191 Sum_probs=83.3
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeec---CeeEEEEeCCCC
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN---KHRINIIDTPGH 165 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~---~~~i~liDTPG~ 165 (608)
+..+|+++|++|+|||||+++|+.... .. . ..|+......+.++ +..+.+|||||+
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~--~~--~-----------------~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 64 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQY--RD--T-----------------QTSITDSSAIYKVNNNRGNSLTLIDLPGH 64 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCC--CC--B-----------------CCCCSCEEEEEECSSTTCCEEEEEECCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc--cc--c-----------------cCCcceeeEEEEecCCCccEEEEEECCCC
Confidence 346999999999999999999973321 00 0 00111222234454 678999999999
Q ss_pred CCchH-HHHHHHHhcCeEEEEEcCCCCCchhHH---HHHHHHH------hcCCCEEEEEeCCCcCCC-cHHHHHHHHHHh
Q 007325 166 VDFTL-EVERALRVLDGAICLFDSVAGVEPQSE---TVWRQAD------KYGVPRICFVNKMDRLGA-NFFRTRDMIVTN 234 (608)
Q Consensus 166 ~df~~-~~~~~l~~~D~~i~VvDa~~g~~~~t~---~~~~~~~------~~~~p~ivviNK~D~~~~-~~~~~~~~i~~~ 234 (608)
.+|.. .+..+++.+|++|+|+|+++ ...... ..|.... ..++|+++|+||+|+... ......+.+++.
T Consensus 65 ~~~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~ 143 (214)
T 2fh5_B 65 ESLRFQLLDRFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKE 143 (214)
T ss_dssp HHHHHHHHHHHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHH
Confidence 99987 56677899999999999986 222222 2233221 236899999999999764 345555555554
Q ss_pred h
Q 007325 235 L 235 (608)
Q Consensus 235 l 235 (608)
+
T Consensus 144 l 144 (214)
T 2fh5_B 144 L 144 (214)
T ss_dssp H
T ss_pred H
Confidence 4
No 103
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.71 E-value=7.1e-17 Score=151.80 Aligned_cols=117 Identities=15% Similarity=0.076 Sum_probs=73.4
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCCCC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGH 165 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~ 165 (608)
+...+|+++|++|+|||||+++|+...... ... ...++.......+..++ ..+.+|||||+
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~---~~~--------------~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~ 70 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLA---GTF--------------ISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCC---CCC--------------CCCCSCEEEEEEEEETTEEEEEEEEECCCC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCC---CCc--------------CCceeeEEEEEEEEECCEEEEEEEEeCCCc
Confidence 445799999999999999999997332110 000 01112222222333343 58999999999
Q ss_pred CCchHHHHHHHHhcCeEEEEEcCCCCCchhHHH-HHHHHHh---cCCCEEEEEeCCCcCC
Q 007325 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQADK---YGVPRICFVNKMDRLG 221 (608)
Q Consensus 166 ~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~-~~~~~~~---~~~p~ivviNK~D~~~ 221 (608)
.+|...+..+++.+|++|+|+|+++........ .+..+.. .++|+++|+||+|+..
T Consensus 71 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 130 (180)
T 2g6b_A 71 ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 130 (180)
T ss_dssp --------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTS
T ss_pred HHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCc
Confidence 999888888999999999999998754333222 2233333 5789999999999864
No 104
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.71 E-value=6.5e-17 Score=152.04 Aligned_cols=116 Identities=16% Similarity=0.137 Sum_probs=70.0
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeec---CeeEEEEeCCC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN---KHRINIIDTPG 164 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~---~~~i~liDTPG 164 (608)
+...+|+++|++|+|||||+++|+....... ....++.+.....+.++ ...+.+|||||
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 67 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQ------------------YKATIGADFLTKEVTVDGDKVATMQVWDTAG 67 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCTT------------------C---CCCSCEEEEECCSSSCCEEEEEECCC-
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCcc------------------cCCccceEEEEEEEEEcCCcEEEEEEEECCC
Confidence 3467999999999999999999973221100 00111222222333333 46899999999
Q ss_pred CCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHHHh-------cCCCEEEEEeCCCcCC
Q 007325 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK-------YGVPRICFVNKMDRLG 221 (608)
Q Consensus 165 ~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~~~-------~~~p~ivviNK~D~~~ 221 (608)
+.+|.......++.+|++|+|+|+++.........| ..+.. .++|+++|+||+|+..
T Consensus 68 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 132 (182)
T 1ky3_A 68 QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEE 132 (182)
T ss_dssp ---------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCG
T ss_pred ChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCcccc
Confidence 999988888889999999999999875443333222 22221 5789999999999853
No 105
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.71 E-value=3.2e-17 Score=154.64 Aligned_cols=114 Identities=16% Similarity=0.132 Sum_probs=75.3
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCCCCC
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHV 166 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~ 166 (608)
+..+|+++|++|+|||||+++|+.... .. . +. ...+.+. ...+.+++ ..+.+|||||+.
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~--~~--~---------~~---~t~~~~~---~~~~~~~~~~~~~~l~Dt~G~~ 65 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQF--VD--S---------YD---PTIENTF---TKLITVNGQEYHLQLVDTAGQD 65 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC--CS--C---------CC---TTCCEEE---EEEEEETTEEEEEEEEECCCCC
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCC--CC--C---------CC---CCccccE---EEEEEECCEEEEEEEEeCCCch
Confidence 457999999999999999999973221 00 0 00 0111122 22333344 678999999999
Q ss_pred CchHHHHHHHHhcCeEEEEEcCCCCCchhHHH-----HHHHHHhcCCCEEEEEeCCCcCC
Q 007325 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSET-----VWRQADKYGVPRICFVNKMDRLG 221 (608)
Q Consensus 167 df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~-----~~~~~~~~~~p~ivviNK~D~~~ 221 (608)
+|......+++.+|++++|+|+++........ +++.+...++|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 125 (181)
T 3t5g_A 66 EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 125 (181)
T ss_dssp TTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTT
T ss_pred hhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchh
Confidence 98777778888999999999998643322222 22222335799999999999854
No 106
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.71 E-value=2.6e-16 Score=145.15 Aligned_cols=112 Identities=16% Similarity=0.201 Sum_probs=76.1
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeec--CeeEEEEeCCCCCCc
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGHVDF 168 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG~~df 168 (608)
.+|+++|++|+|||||+++|+....... ... + +.......+..+ ...+.+|||||+.+|
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~~~-----~~~-~-------------~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 64 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFVDE-----CDP-T-------------IEDSYRKQVVIDGETCLLDILDTAGQEEY 64 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCSC-----CCT-T-------------CCEEEEEEEEETTEEEEEEEEECCCCSSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCccc-----cCC-c-------------cceEEEEEEEECCEEEEEEEEECCCchhh
Confidence 4799999999999999999973211100 000 0 001111222233 356899999999999
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCCCchhH-HHHHHHHHh----cCCCEEEEEeCCCcCC
Q 007325 169 TLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK----YGVPRICFVNKMDRLG 221 (608)
Q Consensus 169 ~~~~~~~l~~~D~~i~VvDa~~g~~~~t-~~~~~~~~~----~~~p~ivviNK~D~~~ 221 (608)
......+++.+|++++|+|+++...... ...+..+.. .++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~ 122 (166)
T 2ce2_X 65 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA 122 (166)
T ss_dssp CHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred hHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh
Confidence 9999999999999999999986433222 222233332 2799999999999864
No 107
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.71 E-value=2.2e-16 Score=151.52 Aligned_cols=119 Identities=18% Similarity=0.128 Sum_probs=79.7
Q ss_pred CCCCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEe---ecCeeEEEEe
Q 007325 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY---WNKHRINIID 161 (608)
Q Consensus 85 ~~~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~---~~~~~i~liD 161 (608)
.+.++..+|+++|.+|+|||||++++.. ..... ...+.+......... .....+.+||
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~---~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~i~D 75 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFH---KMSPN----------------ETLFLESTNKIYKDDISNSSFVNFQIWD 75 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHS---CCCGG----------------GGGGCCCCCSCEEEEECCTTSCCEEEEE
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHh---cCCCc----------------ceeeeccccceeeeeccCCCeeEEEEEE
Confidence 4455667999999999999999998752 11110 011122222222222 2457899999
Q ss_pred CCCCCCchHHH---HHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHh-----cCCCEEEEEeCCCcCCC
Q 007325 162 TPGHVDFTLEV---ERALRVLDGAICLFDSVAGVEPQSETVWRQADK-----YGVPRICFVNKMDRLGA 222 (608)
Q Consensus 162 TPG~~df~~~~---~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~-----~~~p~ivviNK~D~~~~ 222 (608)
|||+.+|.... ..+++.+|++|+|+|+++........+...+.. .++|+++|+||+|+...
T Consensus 76 t~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~ 144 (196)
T 3llu_A 76 FPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSD 144 (196)
T ss_dssp CCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH
T ss_pred CCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCch
Confidence 99999987777 789999999999999998643333333333333 38999999999998753
No 108
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.71 E-value=6e-17 Score=156.90 Aligned_cols=116 Identities=16% Similarity=0.095 Sum_probs=80.3
Q ss_pred CCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCCC
Q 007325 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPG 164 (608)
Q Consensus 87 ~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG 164 (608)
.....+|+++|++|+|||||+++|+..... . +....++.......+.+++ ..+.||||||
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 78 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFN--P----------------SFITTIGIDFKIKTVDINGKKVKLQLWDTAG 78 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCC--C----------------SSSCCCSCCEEEEEEEETTEEEEEEEECCTT
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCC--c----------------ccCCcccceEEEEEEEECCEEEEEEEEeCCC
Confidence 345679999999999999999999732110 0 0011223333344455555 6799999999
Q ss_pred CCCchHHHHHHHHhcCeEEEEEcCCCCCchhHH-HHHHHHHh---cCCCEEEEEeCCCcC
Q 007325 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK---YGVPRICFVNKMDRL 220 (608)
Q Consensus 165 ~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~-~~~~~~~~---~~~p~ivviNK~D~~ 220 (608)
+.+|...+..+++.+|++|+|+|+++....... ..+..+.. .++|+++|+||+|+.
T Consensus 79 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 138 (213)
T 3cph_A 79 QERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 138 (213)
T ss_dssp GGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS
T ss_pred cHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 999988888899999999999999875433222 22333333 378999999999984
No 109
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.70 E-value=7.2e-17 Score=150.01 Aligned_cols=113 Identities=18% Similarity=0.091 Sum_probs=77.5
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCCCCCC
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVD 167 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~d 167 (608)
..+|+++|++|+|||||+++|+.... .. +....++.......+.+++ ..+.+|||||+.+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~--~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~ 64 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKF--NP----------------SFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCC--CC-----------------------CCEEEEEEESSSCEEEEEEECCTTGGG
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCC--CC----------------CCCCccceeEEEEEEEECCEEEEEEEEeCCCChh
Confidence 46899999999999999999973211 00 0011122223333444443 5789999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCCCchhHH-HHHHHHHh---cCCCEEEEEeCCCcC
Q 007325 168 FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK---YGVPRICFVNKMDRL 220 (608)
Q Consensus 168 f~~~~~~~l~~~D~~i~VvDa~~g~~~~t~-~~~~~~~~---~~~p~ivviNK~D~~ 220 (608)
|...+..+++.+|++|+|+|+++....... ..+..+.. .++|+++|+||+|+.
T Consensus 65 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 121 (170)
T 1g16_A 65 FRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 121 (170)
T ss_dssp TSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred hhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC
Confidence 888888899999999999999875433222 22333333 378999999999984
No 110
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.70 E-value=6.7e-17 Score=157.41 Aligned_cols=117 Identities=17% Similarity=0.107 Sum_probs=79.9
Q ss_pred CCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeec------------C
Q 007325 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN------------K 154 (608)
Q Consensus 87 ~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~------------~ 154 (608)
.++..+|+++|.+|+|||||+++|+.... .. .. ...++.+.....+.++ .
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~--~~--~~--------------~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKF--NP--KF--------------ITTVGIDFREKRVVYNAQGPNGSSGKAFK 83 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCC--CC--EE--------------EEEEEEEEEEEEEEEEC-------CCEEE
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCC--Cc--CC--------------CCceeEEEEEEEEEECCccccccccCcee
Confidence 34567999999999999999999972211 00 00 0111122222223232 4
Q ss_pred eeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHH-HHh----cCCCEEEEEeCCCcCC
Q 007325 155 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQ-ADK----YGVPRICFVNKMDRLG 221 (608)
Q Consensus 155 ~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~-~~~----~~~p~ivviNK~D~~~ 221 (608)
..+.||||||+.+|...+..+++.+|++|+|+|+++.........|.. +.. .++|+++|+||+|+..
T Consensus 84 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~ 155 (217)
T 2f7s_A 84 VHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPD 155 (217)
T ss_dssp EEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGG
T ss_pred EEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCcccc
Confidence 689999999999999999999999999999999987544333332322 221 5789999999999853
No 111
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.70 E-value=3.4e-16 Score=154.00 Aligned_cols=116 Identities=15% Similarity=0.098 Sum_probs=78.5
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 167 (608)
.+.++|+++|.+|+|||||+++|+.. ..... ...+.|.......+.+++..+.||||||+.+
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~---~~~~~---------------~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~ 88 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRA---NVDVQ---------------SYSFTTKNLYVGHFDHKLNKYQIIDTPGLLD 88 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTT---CEEEE---------------CC-----CEEEEEEEETTEEEEEEECTTTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC---CCccC---------------CCCCcceeeeeeeeecCCCeEEEEECCCCcC
Confidence 45689999999999999999999621 11000 0123455555556667788999999999943
Q ss_pred c---------hHHHHHHHHhcCeEEEEEcCCCCCchh---HHHHHHHHHhc--CCCEEEEEeCCCcCC
Q 007325 168 F---------TLEVERALRVLDGAICLFDSVAGVEPQ---SETVWRQADKY--GVPRICFVNKMDRLG 221 (608)
Q Consensus 168 f---------~~~~~~~l~~~D~~i~VvDa~~g~~~~---t~~~~~~~~~~--~~p~ivviNK~D~~~ 221 (608)
+ ...+...+..+|++|+|+|+++..... ....+..+... ++|+++|+||+|+..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~ 156 (228)
T 2qu8_A 89 RAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCN 156 (228)
T ss_dssp SCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC
T ss_pred cccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCC
Confidence 2 122233467789999999999764422 23445555554 899999999999864
No 112
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.70 E-value=8.1e-17 Score=153.30 Aligned_cols=117 Identities=20% Similarity=0.164 Sum_probs=78.3
Q ss_pred CCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCCC
Q 007325 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPG 164 (608)
Q Consensus 87 ~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG 164 (608)
..+..+|+++|.+|+|||||+++|+..... .. ....++.+.....+.+++ ..+.||||||
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~----------------~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G 78 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFP--DR----------------TEATIGVDFRERAVDIDGERIKIQLWDTAG 78 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCC--SS----------------CCCCCSCCEEEEEEEETTEEEEEEEEECCC
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCC--CC----------------CCCCcceEEEEEEEEECCEEEEEEEEECCC
Confidence 345689999999999999999999732111 00 001112222223334444 6899999999
Q ss_pred CCCch-HHHHHHHHhcCeEEEEEcCCCCCchhHHH-HHHHHH----hcCCCEEEEEeCCCcCC
Q 007325 165 HVDFT-LEVERALRVLDGAICLFDSVAGVEPQSET-VWRQAD----KYGVPRICFVNKMDRLG 221 (608)
Q Consensus 165 ~~df~-~~~~~~l~~~D~~i~VvDa~~g~~~~t~~-~~~~~~----~~~~p~ivviNK~D~~~ 221 (608)
+.+|. .....+++.+|++|+|+|+++........ .+..+. ..++|+++|+||+|+..
T Consensus 79 ~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 141 (189)
T 1z06_A 79 QERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS 141 (189)
T ss_dssp SHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGG
T ss_pred chhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 99887 67788899999999999998643322222 222222 35789999999999853
No 113
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=6.5e-17 Score=154.55 Aligned_cols=116 Identities=15% Similarity=0.029 Sum_probs=80.5
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCCCC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGH 165 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~ 165 (608)
+...+|+++|++|+|||||+++|+..... . .. .. +. +... ...+.+++ ..+.+|||||+
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~--~--~~-~~-t~----------~~~~---~~~~~~~~~~~~~~i~D~~G~ 76 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFP--E--EY-VP-TV----------FDHY---AVSVTVGGKQYLLGLYDTAGQ 76 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCC--C--SC-CC-SS----------CCCE---EEEEESSSCEEEEEEECCCCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCC--C--CC-CC-cc----------ccee---EEEEEECCEEEEEEEEECCCC
Confidence 34579999999999999999999743110 0 00 00 00 0011 12233333 67899999999
Q ss_pred CCchHHHHHHHHhcCeEEEEEcCCCCCchhHH--HHHHHHHhc--CCCEEEEEeCCCcCCC
Q 007325 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSE--TVWRQADKY--GVPRICFVNKMDRLGA 222 (608)
Q Consensus 166 ~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~--~~~~~~~~~--~~p~ivviNK~D~~~~ 222 (608)
.+|......+++.+|++|+|+|+++....... ..+..+... ++|+++|+||+|+...
T Consensus 77 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 137 (194)
T 2atx_A 77 EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDD 137 (194)
T ss_dssp SSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTC
T ss_pred cchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccc
Confidence 99988888889999999999999875433332 233444444 8999999999998754
No 114
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.70 E-value=5.9e-17 Score=150.76 Aligned_cols=115 Identities=17% Similarity=0.080 Sum_probs=71.8
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeec--CeeEEEEeCCCCC
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGHV 166 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG~~ 166 (608)
...+|+++|++|+|||||+++|+........ ...++.......+.++ ...+.+|||||+.
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~------------------~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 66 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKH------------------ITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSC------------------CCCCSCEEEEEEEESSSCEEEEEEEECCCC-
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCcCC------------------CCccceEEEEEEEEECCEEEEEEEEECCCcH
Confidence 3468999999999999999999733211000 0111112222233333 3578999999999
Q ss_pred CchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHHH---hcCCCEEEEEeCCCcCC
Q 007325 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQAD---KYGVPRICFVNKMDRLG 221 (608)
Q Consensus 167 df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~~---~~~~p~ivviNK~D~~~ 221 (608)
+|.......++.+|++++|+|+++.........| ..+. ..++|+++|+||+|+..
T Consensus 67 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 125 (170)
T 1z08_A 67 RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEK 125 (170)
T ss_dssp ------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGG
T ss_pred hhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc
Confidence 9988888888999999999999875433333222 2222 25789999999999853
No 115
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.70 E-value=1.3e-16 Score=151.42 Aligned_cols=112 Identities=20% Similarity=0.218 Sum_probs=82.4
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCc
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 168 (608)
+..+|+++|++|+|||||+++|+.. .... +...++|+......+.+++..+.+|||||+.+|
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~---~~~~---------------~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~ 67 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE---NVYI---------------GNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL 67 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT---CEEE---------------EECTTSCCEEEEEEEEETTEEEEEEECCCCSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC---Cccc---------------cCCCCeeccceEEEEEeCCcEEEEEECCCcCcc
Confidence 3479999999999999999999621 1111 112355666667777888899999999999987
Q ss_pred h------HHHHHHHH--hcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcC
Q 007325 169 T------LEVERALR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (608)
Q Consensus 169 ~------~~~~~~l~--~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~ 220 (608)
. .....+++ .+|++++|+|+.. .......+..+...++|+++|+||+|+.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~ 125 (188)
T 2wjg_A 68 TANSIDEIIARDYIINEKPDLVVNIVDATA--LERNLYLTLQLMEMGANLLLALNKMDLA 125 (188)
T ss_dssp SSSSHHHHHHHHHHHHHCCSEEEEEEEGGG--HHHHHHHHHHHHTTTCCEEEEEECHHHH
T ss_pred ccccHHHHHHHHHHhccCCCEEEEEecchh--HHHHHHHHHHHHhcCCCEEEEEEhhhcc
Confidence 4 23344444 3899999999986 2333445566677889999999999974
No 116
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=8.6e-17 Score=153.28 Aligned_cols=116 Identities=19% Similarity=0.179 Sum_probs=80.8
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCc
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 168 (608)
+..+|+++|++|+|||||+++|+....... .....+.+.......+......+.||||||+.+|
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~----------------~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 77 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPE----------------LAATIGVDFKVKTISVDGNKAKLAIWDTAGQERF 77 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTT----------------CCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCcc----------------CCCccceEEEEEEEEECCeEEEEEEEeCCCchhh
Confidence 346999999999999999999973221100 0011123333333333334578999999999999
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHHHh----cCCCEEEEEeCCCcC
Q 007325 169 TLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK----YGVPRICFVNKMDRL 220 (608)
Q Consensus 169 ~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~~~----~~~p~ivviNK~D~~ 220 (608)
......+++.+|++|+|+|+++.........| ..+.. .++|+++|+||+|+.
T Consensus 78 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~ 134 (195)
T 1x3s_A 78 RTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE 134 (195)
T ss_dssp CCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS
T ss_pred hhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc
Confidence 88889999999999999999875433333333 33333 368999999999984
No 117
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.70 E-value=7.1e-17 Score=149.74 Aligned_cols=115 Identities=16% Similarity=0.163 Sum_probs=77.8
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeec--CeeEEEEeCCCCC
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGHV 166 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG~~ 166 (608)
+..+|+++|++|+|||||+++|+... ... . + ...++.+.....+.++ ...+.+|||||+.
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~--~~~--~---------~-----~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 65 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGI--FTK--D---------Y-----KKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCC--CCC--C---------S-----SCCCSSSEEEEEEEETTEEEEEEEECCTTGG
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCC--CCC--C---------C-----CCceEEEEEEEEEEECCEEEEEEEEcCCCcH
Confidence 34689999999999999999997321 110 0 0 0011111222233333 3589999999999
Q ss_pred CchHHHHHHHHhcCeEEEEEcCCCCCchhHHH-HHHHHHh--cCCCEEEEEeCCCcCC
Q 007325 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQADK--YGVPRICFVNKMDRLG 221 (608)
Q Consensus 167 df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~-~~~~~~~--~~~p~ivviNK~D~~~ 221 (608)
+|......+++.+|++++|+|+++........ .+..+.. .++|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 123 (168)
T 1z2a_A 66 EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLD 123 (168)
T ss_dssp GTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGG
T ss_pred hHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCc
Confidence 98888888999999999999998743322222 2233322 4899999999999853
No 118
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=3.4e-16 Score=149.73 Aligned_cols=116 Identities=15% Similarity=0.129 Sum_probs=77.3
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCc
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 168 (608)
...+|+++|.+|+|||||+++|+....... +.+ ..+.+.. ....+......+.||||||+.+|
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-------------~~~---t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~ 69 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDT-------------YIP---TIEDTYR-QVISCDKSVCTLQITDTTGSHQF 69 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCT-------------TSC---CCCEEEE-EEEEETTEEEEEEEEECCGGGSC
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCc-------------ccC---cccccee-EEEEECCEEEEEEEEeCCChHHh
Confidence 347999999999999999999973211100 000 0011111 11122223457999999999999
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCCCchhH-HHHHHHHHh-----cCCCEEEEEeCCCcCC
Q 007325 169 TLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK-----YGVPRICFVNKMDRLG 221 (608)
Q Consensus 169 ~~~~~~~l~~~D~~i~VvDa~~g~~~~t-~~~~~~~~~-----~~~p~ivviNK~D~~~ 221 (608)
......+++.+|++|+|+|+++...... ...+..+.. .++|+++|+||+|+..
T Consensus 70 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~ 128 (199)
T 2gf0_A 70 PAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ 128 (199)
T ss_dssp HHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS
T ss_pred HHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc
Confidence 9999999999999999999986433222 123333322 3789999999999864
No 119
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.70 E-value=1.4e-16 Score=172.56 Aligned_cols=117 Identities=17% Similarity=0.256 Sum_probs=86.2
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCc
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 168 (608)
...+|+|+|++|+|||||+|+|+ |...... ....|+|.+.....+.+++..+.+|||||+..+
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~---g~~~~~v--------------~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~ 241 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAIL---NKERALV--------------SPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRK 241 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHH---TSTTEEE--------------CCCC------CCEEEEETTEEEEESSCSCC---
T ss_pred cCceEEEECCCCCCHHHHHHHHh---CCccccc--------------CCCCCCcCCceEEEEEECCEEEEEEECCCCccc
Confidence 45799999999999999999996 2211111 112456777777788889999999999998543
Q ss_pred hH------------HHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCC
Q 007325 169 TL------------EVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (608)
Q Consensus 169 ~~------------~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (608)
.. ....+++.+|++++|+|+.++...+...++..+...++|+++|+||+|+...
T Consensus 242 ~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~~ 307 (439)
T 1mky_A 242 SRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVH 307 (439)
T ss_dssp --------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTT
T ss_pred cccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCCc
Confidence 22 2356788999999999999998888888888888899999999999998643
No 120
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.70 E-value=9.8e-17 Score=153.11 Aligned_cols=116 Identities=16% Similarity=0.094 Sum_probs=79.4
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCCCC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGH 165 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~ 165 (608)
....+|+++|.+|+|||||+++|+........ ....|.+.. ...+.+++ ..+.||||||+
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----------------~~t~~~~~~--~~~~~~~~~~~~~~i~Dt~G~ 80 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH----------------DLTIGVEFG--ARMVNIDGKQIKLQIWDTAGQ 80 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC---------------------CCSSEE--EEEEEETTEEEEEEEECCTTG
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCC----------------CCcccceeE--EEEEEECCEEEEEEEEECCCc
Confidence 34579999999999999999999732211000 001122222 22333343 58999999999
Q ss_pred CCchHHHHHHHHhcCeEEEEEcCCCCCchhHH-HHHHHHHh---cCCCEEEEEeCCCcCC
Q 007325 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK---YGVPRICFVNKMDRLG 221 (608)
Q Consensus 166 ~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~-~~~~~~~~---~~~p~ivviNK~D~~~ 221 (608)
.+|......+++.+|++|+|+|+++....+.. ..+..+.. .++|+++|+||+|+..
T Consensus 81 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~ 140 (191)
T 2a5j_A 81 ESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLES 140 (191)
T ss_dssp GGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred hhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCC
Confidence 99988888899999999999999875433332 23333433 3789999999999853
No 121
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.69 E-value=1.6e-16 Score=150.12 Aligned_cols=116 Identities=15% Similarity=0.029 Sum_probs=77.6
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCch
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~ 169 (608)
..+|+++|++|+|||||+++|+...-..... .+. +... .....+......+.+|||||+.+|.
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~------~t~----------~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~ 67 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYI------PTV----------FDNY-SANVMVDGKPVNLGLWDTAGQEDYD 67 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCSSCC------CCS----------CCEE-EEEEEETTEEEEEEEECCCCSGGGT
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCCCcC------Ccc----------ccee-EEEEEECCEEEEEEEEECCCCHhHH
Confidence 3689999999999999999997322110000 000 0011 1111122233567899999999998
Q ss_pred HHHHHHHHhcCeEEEEEcCCCCCchhHHH--HHHHHHhc--CCCEEEEEeCCCcCCC
Q 007325 170 LEVERALRVLDGAICLFDSVAGVEPQSET--VWRQADKY--GVPRICFVNKMDRLGA 222 (608)
Q Consensus 170 ~~~~~~l~~~D~~i~VvDa~~g~~~~t~~--~~~~~~~~--~~p~ivviNK~D~~~~ 222 (608)
.....+++.+|++|+|+|+++........ .+..+... ++|+++|+||+|+...
T Consensus 68 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 124 (186)
T 1mh1_A 68 RLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 124 (186)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTC
T ss_pred HHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEccccccc
Confidence 87778889999999999998754444332 33444443 8999999999998653
No 122
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.69 E-value=1.5e-16 Score=153.67 Aligned_cols=117 Identities=20% Similarity=0.161 Sum_probs=81.3
Q ss_pred CCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCCC
Q 007325 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPG 164 (608)
Q Consensus 87 ~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG 164 (608)
.+...+|+++|.+|+|||||+++|+.... .. +....++.+.....+.+++ ..+.+|||||
T Consensus 23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~--~~----------------~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G 84 (201)
T 2ew1_A 23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLF--PP----------------GQGATIGVDFMIKTVEINGEKVKLQIWDTAG 84 (201)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSC--CT----------------TCCCCCSEEEEEEEEEETTEEEEEEEEEECC
T ss_pred cccceEEEEECcCCCCHHHHHHHHHhCCC--CC----------------CCCCccceeEEEEEEEECCEEEEEEEEECCC
Confidence 34568999999999999999999973211 00 0001122333333444554 5799999999
Q ss_pred CCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHHHh---cCCCEEEEEeCCCcCC
Q 007325 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 221 (608)
Q Consensus 165 ~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~~~---~~~p~ivviNK~D~~~ 221 (608)
+.+|......+++.+|++|+|+|+++.........| ..+.. .++|+++|+||+|+..
T Consensus 85 ~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~ 145 (201)
T 2ew1_A 85 QERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAE 145 (201)
T ss_dssp SGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred cHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 999998888899999999999999875433222222 33332 4689999999999853
No 123
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.69 E-value=3.8e-17 Score=177.83 Aligned_cols=115 Identities=24% Similarity=0.293 Sum_probs=88.3
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCC----
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG---- 164 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG---- 164 (608)
+.++|+|+|++|+|||||+|+|+... .. ..+...|+|.+.....+.|.+..+++|||||
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~-----~~------------~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~ 84 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGER-----IS------------IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIG 84 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEE-----EC-----------------------CEEEECTTCSSCCEEECCCC----
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC-----Cc------------ccCCCCCcceeEEEEEEEECCceEEEEECCCCCCc
Confidence 35799999999999999999995110 00 1223468888888888999999999999999
Q ss_pred ----CCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcC
Q 007325 165 ----HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (608)
Q Consensus 165 ----~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~ 220 (608)
+..+...+..+++.+|++|+|+|+.++....+..+++.+...++|+++|+||+|+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 85 DEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 144 (456)
T ss_dssp --CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---
T ss_pred chHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccch
Confidence 44566778888999999999999999999999999999999999999999999975
No 124
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.69 E-value=2.2e-16 Score=146.42 Aligned_cols=114 Identities=12% Similarity=0.050 Sum_probs=62.3
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCch
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~ 169 (608)
..+|+++|.+|+|||||+++|+ +..... .....|.+.. ....+......+.+|||||+.+|.
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~---~~~~~~--------------~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~ 63 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFG---GVEDGP--------------EAEAAGHTYD-RSIVVDGEEASLMVYDIWEQDGGR 63 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHC---CC------------------------CEEE-EEEEETTEEEEEEEEECC------
T ss_pred eEEEEEECCCCCCHHHHHHHHc---CccccC--------------CCCccccceE-EEEEECCEEEEEEEEECCCCccch
Confidence 3589999999999999999995 211110 0011222332 112222234678999999999999
Q ss_pred HHHHHHHHhcCeEEEEEcCCCCCchhHH-HHHHHHHh----cCCCEEEEEeCCCcCC
Q 007325 170 LEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK----YGVPRICFVNKMDRLG 221 (608)
Q Consensus 170 ~~~~~~l~~~D~~i~VvDa~~g~~~~t~-~~~~~~~~----~~~p~ivviNK~D~~~ 221 (608)
.....+++.+|++++|+|.++....... ..+..+.. .++|+++|+||+|+..
T Consensus 64 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 120 (166)
T 3q72_A 64 WLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 120 (166)
T ss_dssp ---------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCS
T ss_pred hhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccccc
Confidence 8888999999999999999964332222 23334433 4789999999999864
No 125
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.69 E-value=1.2e-17 Score=163.36 Aligned_cols=120 Identities=20% Similarity=0.178 Sum_probs=86.6
Q ss_pred CCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCC
Q 007325 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (608)
Q Consensus 87 ~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 166 (608)
.....+|+++|.+|+|||||+++|+..... . . .....|++.......+...+..+.+|||||+.
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~--~--~------------~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 75 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFE--K--K------------YVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHHT--C--E------------EETTTTEEEEEEEEEETTEEEEEEEEEECSGG
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCC--C--C------------CCCccceeEEEEEEEECCEEEEEEEEeCCChH
Confidence 344579999999999999999997532110 0 0 01123456665555555566789999999999
Q ss_pred CchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHH-HHHh--cCCCEEEEEeCCCcCCC
Q 007325 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWR-QADK--YGVPRICFVNKMDRLGA 222 (608)
Q Consensus 167 df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~-~~~~--~~~p~ivviNK~D~~~~ 222 (608)
+|......+++.+|++|+|+|+++.........|. .+.. .++|+++|+||+|+...
T Consensus 76 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 134 (221)
T 3gj0_A 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 134 (221)
T ss_dssp GTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSC
T ss_pred HHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccc
Confidence 99888888999999999999999755444433332 3322 28999999999998643
No 126
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.69 E-value=8e-17 Score=155.31 Aligned_cols=115 Identities=19% Similarity=0.136 Sum_probs=78.8
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeec--CeeEEEEeCCCC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGH 165 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG~ 165 (608)
....+|+++|++|+|||||+++|+....... ....++.+.....+.++ ...+.||||||+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~------------------~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 67 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQ------------------YKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSS------------------CCCCCSEEEEEEEEESSSCEEEEEEEEECSS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCC------------------CCCcccceEEEEEEEECCEEEEEEEEeCCCc
Confidence 3457999999999999999999973321100 00112222233333333 368999999999
Q ss_pred CCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHHHh-------cCCCEEEEEeCCCcC
Q 007325 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK-------YGVPRICFVNKMDRL 220 (608)
Q Consensus 166 ~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~~~-------~~~p~ivviNK~D~~ 220 (608)
.+|......+++.+|++|+|+|+++.........| ..+.. .++|+++|+||+|+.
T Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (207)
T 1vg8_A 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE 130 (207)
T ss_dssp GGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS
T ss_pred HHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc
Confidence 99887777888999999999999875433333322 22221 478999999999986
No 127
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.69 E-value=2.7e-16 Score=146.21 Aligned_cols=114 Identities=13% Similarity=0.031 Sum_probs=68.3
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeec--CeeEEEEeCCCCCC
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGHVD 167 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG~~d 167 (608)
..+|+++|.+|+|||||+++|+........ . ...+.......+.++ ...+.+|||||+.+
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 63 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAH--E----------------MENSEDTYERRIMVDKEEVTLIVYDIWEQGD 63 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------------------------CEEEEEEEETTEEEEEEEECCCCC--
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccc--c----------------CCCcCCeeeEEEEECCeEEEEEEEECCCccc
Confidence 468999999999999999999622111000 0 011222222233333 36788999999999
Q ss_pred chH-HHHHHHHhcCeEEEEEcCCCCCchhHH-HHHHHHHh----cCCCEEEEEeCCCcCC
Q 007325 168 FTL-EVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK----YGVPRICFVNKMDRLG 221 (608)
Q Consensus 168 f~~-~~~~~l~~~D~~i~VvDa~~g~~~~t~-~~~~~~~~----~~~p~ivviNK~D~~~ 221 (608)
+.. ....+++.+|++++|+|+++....... ..+..+.. .++|+++|+||+|+..
T Consensus 64 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (169)
T 3q85_A 64 AGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR 123 (169)
T ss_dssp ------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGG
T ss_pred cchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhh
Confidence 876 455668889999999999874322222 22333333 2799999999999853
No 128
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.69 E-value=9.1e-17 Score=155.35 Aligned_cols=116 Identities=12% Similarity=0.019 Sum_probs=79.7
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeec--CeeEEEEeCCCC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGH 165 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG~ 165 (608)
.+..+|+++|.+|+|||||+++|+........ .+.+.......+.++ ...+.+|||||+
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~-------------------~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 88 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEY-------------------IPTVFDNYSANVMVDGKPVNLGLWDTAGL 88 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-C-------------------CCCSEEEEEEEEECC-CEEEEEEEEECCS
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCc-------------------CCeecceeEEEEEECCEEEEEEEEECCCc
Confidence 34579999999999999999999733221000 011111112222333 356679999999
Q ss_pred CCchHHHHHHHHhcCeEEEEEcCCCCCchhHHH--HHHHHHhc--CCCEEEEEeCCCcCCC
Q 007325 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSET--VWRQADKY--GVPRICFVNKMDRLGA 222 (608)
Q Consensus 166 ~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~--~~~~~~~~--~~p~ivviNK~D~~~~ 222 (608)
.+|......+++.+|++|+|+|+++........ .+..+... ++|+++|+||+|+...
T Consensus 89 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 149 (204)
T 4gzl_A 89 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 149 (204)
T ss_dssp GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTC
T ss_pred hhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccc
Confidence 999888888899999999999999765544432 33344444 8999999999998754
No 129
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.69 E-value=1.4e-16 Score=159.20 Aligned_cols=119 Identities=18% Similarity=0.193 Sum_probs=89.0
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCC----
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH---- 165 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~---- 165 (608)
..+|+++|++|+|||||+|+|+......... ...++|.......+.+++..++||||||+
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~----------------~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~ 84 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQRRFFSRL----------------GATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQ 84 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSCCC-------------------------CCSCEEEEEEETTEEEEEEECCSCSSTT
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCCCccccC----------------CCCCccccEEEEEEEECCcEEEEEECCCCCCCC
Confidence 4699999999999999999997332211100 01245666667778889999999999998
Q ss_pred ----CCchHHHHHHH----HhcCeEEEEEcCCCCCchhHHHHHHHHHhc------CCCEEEEEeCCCcCCCcHH
Q 007325 166 ----VDFTLEVERAL----RVLDGAICLFDSVAGVEPQSETVWRQADKY------GVPRICFVNKMDRLGANFF 225 (608)
Q Consensus 166 ----~df~~~~~~~l----~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~------~~p~ivviNK~D~~~~~~~ 225 (608)
.++..++.+++ +.+|++|+|+|+.. ....+..+++.+... +.|+++|.||+|+...++.
T Consensus 85 ~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~ 157 (247)
T 3lxw_A 85 VSKTDPGCEERGHCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLH 157 (247)
T ss_dssp HHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHH
T ss_pred CCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHH
Confidence 55667777776 88999999999985 666677777776653 7899999999999766543
No 130
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.68 E-value=4.7e-17 Score=153.37 Aligned_cols=116 Identities=16% Similarity=0.104 Sum_probs=72.7
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCch
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~ 169 (608)
..+|+++|++|+|||||+++|+......... . +..+ ... ....+......+.+|||||+.+|.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~-----~-t~~~----------~~~-~~~~~~~~~~~~~i~Dt~G~~~~~ 70 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYV-----P-TVFD----------NFS-ANVVVNGATVNLGLWDTAGQEDYN 70 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSCCC--------------------------CB-CCCC-------CEEECCCC-CTTT
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCC-----C-eeee----------eEE-EEEEECCEEEEEEEEECCCChhhh
Confidence 4689999999999999999997332110000 0 0000 000 001111234567799999999998
Q ss_pred HHHHHHHHhcCeEEEEEcCCCCCchhHHH--HHHHHHh--cCCCEEEEEeCCCcCCC
Q 007325 170 LEVERALRVLDGAICLFDSVAGVEPQSET--VWRQADK--YGVPRICFVNKMDRLGA 222 (608)
Q Consensus 170 ~~~~~~l~~~D~~i~VvDa~~g~~~~t~~--~~~~~~~--~~~p~ivviNK~D~~~~ 222 (608)
.....+++.+|++++|+|+++........ .+..+.. .++|+++|+||+|+...
T Consensus 71 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 127 (182)
T 3bwd_D 71 RLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDD 127 (182)
T ss_dssp TTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTC
T ss_pred hhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcC
Confidence 88888899999999999998754433332 2333433 27999999999998654
No 131
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.68 E-value=2e-16 Score=152.78 Aligned_cols=116 Identities=18% Similarity=0.177 Sum_probs=81.3
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCCCC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGH 165 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~ 165 (608)
+...+|+++|++|+|||||+++|+..... . +....++.......+.+++ ..+.||||||+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~----------------~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 67 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYT--N----------------DYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 67 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCC--T----------------TCCCSSCCCEEEEEEEETTEEEEEEEECCTTT
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCC--C----------------CCCCcccceeEEEEEEECCEEEEEEEEeCCCh
Confidence 44579999999999999999999732210 0 0011222223333444444 58999999999
Q ss_pred CCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHHHh---cCCCEEEEEeCCCcCC
Q 007325 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 221 (608)
Q Consensus 166 ~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~~~---~~~p~ivviNK~D~~~ 221 (608)
.+|......+++.+|++|+|+|+++.........| ..+.. .++|+++|+||+|+..
T Consensus 68 ~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (206)
T 2bcg_Y 68 ERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKD 127 (206)
T ss_dssp TTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred HHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 99988888889999999999999975444433333 33333 4689999999999864
No 132
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.68 E-value=1.6e-16 Score=161.30 Aligned_cols=201 Identities=16% Similarity=0.204 Sum_probs=117.7
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCCCCCC
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVD 167 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~d 167 (608)
..+|+++|++|+|||||+|+|+.... ...... + .......++++......+.+++ ..++||||||+.+
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~---~~~~~~-~------~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d 77 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDL---YSPEYP-G------PSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGD 77 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC-------------------------CCCEEEEEEECC--CCEEEEEEECCCCSC
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCc---cccCCC-C------cccccCCceEEEEEEEEEecCCeEEEEEEEECCCccc
Confidence 36899999999999999999852111 110000 0 0001123334444445555555 4899999999954
Q ss_pred c-------hHHH-------HHHHHh-------------cCeEEEEEcCC-CCCchhHHHHHHHHHhcCCCEEEEEeCCCc
Q 007325 168 F-------TLEV-------ERALRV-------------LDGAICLFDSV-AGVEPQSETVWRQADKYGVPRICFVNKMDR 219 (608)
Q Consensus 168 f-------~~~~-------~~~l~~-------------~D~~i~VvDa~-~g~~~~t~~~~~~~~~~~~p~ivviNK~D~ 219 (608)
+ .... ..++.. +|++++++|.. ++....+..+++.+.. ++|+++|+||+|+
T Consensus 78 ~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~pvi~V~nK~D~ 156 (274)
T 3t5d_A 78 AVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADT 156 (274)
T ss_dssp CSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSCEEEEESSGGG
T ss_pred cccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCCEEEEEeccCC
Confidence 3 2222 444554 67888888655 5888888888888877 8999999999998
Q ss_pred CCC-cHHHHHHHHHHhh---CCccEEEe-----------------cc---CCCCCCeeeEEecccceeEEecCcCCCcee
Q 007325 220 LGA-NFFRTRDMIVTNL---GAKPLVVQ-----------------LP---VGAEDNFKGVVDLVKMKAIIWSGEELGAKF 275 (608)
Q Consensus 220 ~~~-~~~~~~~~i~~~l---~~~~~~~~-----------------~p---i~~~~~~~g~idl~~~~~~~~~~~~~g~~~ 275 (608)
... +.....+.+.+.+ +..+.++. +| ++....+....+.+..+.|.|.
T Consensus 157 ~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p~~vv~s~~~~~~~~~~~~~r~y~wg-------- 228 (274)
T 3t5d_A 157 LTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLPLAVVGSNTIIEVNGKRVRGRQYPWG-------- 228 (274)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTCSEECCCCCCC--------CEEECSSC--------
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCCcEEEEeeeEEeeCCeEEEeeecccc--------
Confidence 753 3444445555544 33322211 11 3444444444455556666552
Q ss_pred eeecCcHhHHHHHHHHHHHHH-----HHHHhhcHHHHHHH
Q 007325 276 AYEDIPANLQKMAQEYRSQMI-----ETIVELDDEAMESY 310 (608)
Q Consensus 276 ~~~~~~~~~~~~~~~~r~~l~-----e~~~~~dd~l~e~~ 310 (608)
..+++......+..+|..|+ |.+...++.++|+|
T Consensus 229 -~~~ve~~~~~df~~lr~~l~~~~~~~l~~~t~~~~ye~y 267 (274)
T 3t5d_A 229 -VAEVENGEHCDFTILRNMLIRTHMQDLKDVTNNVHYENY 267 (274)
T ss_dssp -EEESSCTTTCSHHHHHHTTTTTTHHHHHHHHHHTHHHHH
T ss_pred -eEEecCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455544555667777776 88888899999988
No 133
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.68 E-value=4.2e-16 Score=148.21 Aligned_cols=113 Identities=18% Similarity=0.217 Sum_probs=67.6
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCCCCCC
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVD 167 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~d 167 (608)
..+|+++|.+|+|||||+++|+..... . .. .++ +.......+.+++ ..+.+|||||+.+
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~~~--~--~~-~~t--------------~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 81 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNHFV--D--EY-DPT--------------IEDSYRKQVVIDGETCLLDILDTAGQEE 81 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCC--S--CC-CTT--------------CCEEEEEEEEETTEEEEEEEEECCC---
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCCCc--c--cc-CCc--------------cceEEEEEEEECCEEEEEEEEECCChHH
Confidence 368999999999999999999732210 0 00 000 1111112233333 5699999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHHHh----cCCCEEEEEeCCCcCC
Q 007325 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK----YGVPRICFVNKMDRLG 221 (608)
Q Consensus 168 f~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~~~----~~~p~ivviNK~D~~~ 221 (608)
|......+++.+|++++|+|+.+.........| ..+.. .++|+++|+||+|+..
T Consensus 82 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 82 YSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT 140 (190)
T ss_dssp --------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred HHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc
Confidence 998888999999999999999875443333322 23322 3799999999999864
No 134
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.68 E-value=6.4e-17 Score=176.04 Aligned_cols=113 Identities=19% Similarity=0.126 Sum_probs=68.8
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchH
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~ 170 (608)
.+|+|+|++|+|||||+|+|+.... .......|+|.+.....+.+++..++||||||+.++..
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~~~~~-----------------a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~ 296 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLLGQER-----------------AIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGE 296 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC-----------------------------------CEEEEETTEEEEEEC---------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-----------------cccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchh
Confidence 4699999999999999999962211 01122346677777778888999999999999988765
Q ss_pred HHHH--------HHHhcCeEEEEEcCCCCCch----hHHHHHHHHHhcCCCEEEEEeCCCcCCC
Q 007325 171 EVER--------ALRVLDGAICLFDSVAGVEP----QSETVWRQADKYGVPRICFVNKMDRLGA 222 (608)
Q Consensus 171 ~~~~--------~l~~~D~~i~VvDa~~g~~~----~t~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (608)
.+.. +++.+|++|+|+|++++... ....+++.+. ++|+++|+||+|+...
T Consensus 297 ~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~ 358 (476)
T 3gee_A 297 EIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAAN 358 (476)
T ss_dssp -----------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTT
T ss_pred HHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCc
Confidence 4433 46788999999999988766 4444444433 7999999999998754
No 135
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.68 E-value=1.5e-17 Score=174.12 Aligned_cols=240 Identities=14% Similarity=0.085 Sum_probs=144.3
Q ss_pred CCCceeEEEEcCCCCchHHHHHHHHHhh---CCcccceeeccCCcc------ccchhhhh----hcceeEeec-------
Q 007325 87 LKDYRNIGIMAHIDAGKTTTTERVLFYT---GRNYKIGEVHEGTAT------MDWMEQEQ----ERGITITSA------- 146 (608)
Q Consensus 87 ~~~~~~i~ivG~~~~GKTTL~~~ll~~~---g~~~~~g~~~~g~~~------~d~~~~e~----~~giTi~~~------- 146 (608)
..+...|+++|++|+|||||+++|+... +........+.+++. .|....+. .+++-....
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g 132 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGG 132 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----C
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccch
Confidence 4567899999999999999999996432 221111122222221 12111110 111100000
Q ss_pred --------EEEEeecCeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCC
Q 007325 147 --------ATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMD 218 (608)
Q Consensus 147 --------~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D 218 (608)
...+.+.++.++||||||+.++... ..+.+|++++|+|+..+...+.... ...++|.++|+||+|
T Consensus 133 ~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~----~~~~~p~ivv~NK~D 205 (341)
T 2p67_A 133 ASQRARELMLLCEAAGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK----GLMEVADLIVINKDD 205 (341)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH----HHHHHCSEEEECCCC
T ss_pred hHHHHHHHHHHhhccCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH----hhhcccCEEEEECCC
Confidence 0011256889999999999886654 4689999999999986533221111 123578999999999
Q ss_pred cCCC-cHHHHHHHHHHhhCC-cc-----EEEeccCC--CCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHH
Q 007325 219 RLGA-NFFRTRDMIVTNLGA-KP-----LVVQLPVG--AEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQ 289 (608)
Q Consensus 219 ~~~~-~~~~~~~~i~~~l~~-~~-----~~~~~pi~--~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 289 (608)
+... ++...++++++.++. .. .+..+|+. .+.++.++++.+.+....|.. + ..+|. ....
T Consensus 206 l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~~~~~---~-----~~~~~---~r~~ 274 (341)
T 2p67_A 206 GDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALTA---S-----GRLQQ---VRQQ 274 (341)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHHHHH---T-----THHHH---HHHH
T ss_pred CCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHHHHHh---C-----ChHHH---HHHH
Confidence 9764 455566667664321 10 22345554 677788888777655433321 1 12232 2233
Q ss_pred HHHHHHHHHHHhhcHHHHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeeccCCCCChHHHHHHHHH
Q 007325 290 EYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVD 357 (608)
Q Consensus 290 ~~r~~l~e~~~~~dd~l~e~~l~~~~~~~~el~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~ 357 (608)
+++..+.|.+ ++.++++|+++ ++.+++.+.+++++..+.+.|++|. +.|++.+..
T Consensus 275 ~~~~~~~e~i---~e~l~~~~~~~--~~~~~~~~~l~~~v~~~~~~P~~~~--------~~~~~~~~~ 329 (341)
T 2p67_A 275 QSVEWLRKQT---EEEVLNHLFAN--EDFDRYYRQTLLAVKNNTLSPRTGL--------RQLSEFIQT 329 (341)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHC--HHHHHHHHHHHHHHHTTSSCHHHHH--------HHHHHHHHC
T ss_pred HHHHHHHHHH---HHHHHHHHHhC--cchhHHHHHHHHHHHhCCCCHHHHH--------HHHHHHHhh
Confidence 3555666664 88999999985 8888999999999999999999764 677877755
No 136
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.68 E-value=1.8e-16 Score=174.42 Aligned_cols=114 Identities=17% Similarity=0.078 Sum_probs=85.7
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 167 (608)
.+..+|+|+|.+|+|||||+++|+.... . . . ..|+......+.+++..+.||||||+.+
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~--~---~---------~-------~~T~~~~~~~~~~~~~~~~l~Dt~G~~~ 378 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQS--V---T---------T-------IPTVGFNVETVTYKNVKFNVWDVGGQDK 378 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSC--C---C---------C-------CCCSSEEEEEEESSSCEEEEEEECCCGG
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCC--C---C---------c-------CCccceeEEEEEeCCEEEEEEECCCcHH
Confidence 3457999999999999999999973221 0 0 0 0144555566777889999999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCCCchhHHH-HHHHHHh----cCCCEEEEEeCCCcCCC
Q 007325 168 FTLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQADK----YGVPRICFVNKMDRLGA 222 (608)
Q Consensus 168 f~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~-~~~~~~~----~~~p~ivviNK~D~~~~ 222 (608)
|...+..+++.+|++|+|+|+++........ .+..+.. .++|+++|+||+|+...
T Consensus 379 ~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 438 (497)
T 3lvq_E 379 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 438 (497)
T ss_dssp GSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSC
T ss_pred HHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcC
Confidence 9888888999999999999999864433332 2333322 47999999999998653
No 137
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.68 E-value=4.4e-17 Score=156.98 Aligned_cols=119 Identities=18% Similarity=0.164 Sum_probs=77.4
Q ss_pred CCCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCC
Q 007325 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (608)
Q Consensus 86 ~~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 165 (608)
+..+..+|+++|.+|+|||||+++|+....... +. ...+.+. .....+......+.||||||+
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-------------~~---~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~ 82 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEG-------------YD---PTVENTY-SKIVTLGKDEFHLHLVDTAGQ 82 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSC-------------CC---CCSEEEE-EEEEC----CEEEEEEEECCC
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCC-------------CC---CccceEE-EEEEEECCEEEEEEEEECCCc
Confidence 345568999999999999999999973221100 00 0011111 222233345678999999999
Q ss_pred CCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHHH----hcCCCEEEEEeCCCcCC
Q 007325 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQAD----KYGVPRICFVNKMDRLG 221 (608)
Q Consensus 166 ~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~~----~~~~p~ivviNK~D~~~ 221 (608)
.+|......+++.+|++|+|+|+++.........| ..+. ..++|+++|+||+|+..
T Consensus 83 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 143 (201)
T 3oes_A 83 DEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSP 143 (201)
T ss_dssp CTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGG
T ss_pred cchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCcc
Confidence 99988888889999999999999964333333222 3332 24789999999999853
No 138
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.68 E-value=1.2e-16 Score=153.87 Aligned_cols=116 Identities=16% Similarity=0.162 Sum_probs=78.1
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCCCC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGH 165 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~ 165 (608)
+...+|+++|.+|+|||||+++|+...... +....++.......+..++ ..+.||||||+
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~------------------~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~ 84 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQ------------------DSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQ 84 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------------------------CCEEEEEEEETTEEEEEEEECCTTH
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCc------------------cCCCcccceeEEEEEEECCeeeEEEEEcCCCc
Confidence 456799999999999999999997221100 0011122222233344444 68999999999
Q ss_pred CCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHHHh---cCCCEEEEEeCCCcCC
Q 007325 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 221 (608)
Q Consensus 166 ~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~~~---~~~p~ivviNK~D~~~ 221 (608)
.+|...+..+++.+|++|+|+|+++.........| ..+.. .++|+++|+||+|+..
T Consensus 85 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 144 (200)
T 2o52_A 85 ERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDP 144 (200)
T ss_dssp HHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGG
T ss_pred HhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccc
Confidence 88877788889999999999999975433332222 33322 4789999999999853
No 139
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.9e-16 Score=155.28 Aligned_cols=116 Identities=17% Similarity=0.109 Sum_probs=78.6
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCCCC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGH 165 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~ 165 (608)
+...+|+++|++|+|||||+++|+....... ....++.......+.+++ ..+.||||||+
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~------------------~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 72 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMD------------------SKSTIGVEFATRTLEIEGKRIKAQIWDTAGQ 72 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------------------------CCSEEEEEEEETTEEEEEEEECCTTT
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCC------------------CCCcccceeEEEEEEECCEEEEEEEEECCCc
Confidence 4567999999999999999999973221100 001112222233444455 68999999999
Q ss_pred CCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHHHh---cCCCEEEEEeCCCcCC
Q 007325 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 221 (608)
Q Consensus 166 ~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~~~---~~~p~ivviNK~D~~~ 221 (608)
.+|...+..+++.+|++|+|+|+++.........| ..+.. .++|+++|+||+|+..
T Consensus 73 ~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~ 132 (223)
T 3cpj_B 73 ERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAH 132 (223)
T ss_dssp TTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGG
T ss_pred cchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 99988888889999999999999976544433333 33333 3789999999999853
No 140
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.67 E-value=1.1e-15 Score=146.32 Aligned_cols=115 Identities=20% Similarity=0.131 Sum_probs=75.4
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCc
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 168 (608)
+..+|+++|.+|+|||||+++|+...... ++.+ ..+... .....+......+.+|||||+.+
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~-------------~~~~---t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~- 88 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIW-------------EYDP---TLESTY-RHQATIDDEVVSMEILDTAGQED- 88 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCS-------------CCCT---TCCEEE-EEEEEETTEEEEEEEEECCCCCC-
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCc-------------ccCC---CCCceE-EEEEEECCEEEEEEEEECCCCCc-
Confidence 45799999999999999999997321100 0000 001111 11112222346799999999998
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCCCchhH-HHHHHHHH----hcCCCEEEEEeCCCcCC
Q 007325 169 TLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQAD----KYGVPRICFVNKMDRLG 221 (608)
Q Consensus 169 ~~~~~~~l~~~D~~i~VvDa~~g~~~~t-~~~~~~~~----~~~~p~ivviNK~D~~~ 221 (608)
.......++.+|++|+|+|+++...... ...+..+. ..++|+++|+||+|+..
T Consensus 89 ~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 146 (196)
T 2atv_A 89 TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH 146 (196)
T ss_dssp CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGG
T ss_pred ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECccccc
Confidence 7778888999999999999986332211 12222222 35899999999999854
No 141
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.67 E-value=9.8e-16 Score=149.21 Aligned_cols=115 Identities=13% Similarity=-0.012 Sum_probs=63.7
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeec--CeeEEEEeCCCCC
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGHV 166 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG~~ 166 (608)
+..+|+++|.+|+|||||+++|+.... . ... . ..+.......+..+ ...+.||||||+.
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~--~--~~~-~--------------~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 93 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAF--P--ESY-T--------------PTVFERYMVNLQVKGKPVHLHIWDTAGQD 93 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC------------C--------------CCCCEEEEEEEEETTEEEEEEEEEC----
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCC--C--CCC-C--------------CccceeEEEEEEECCEEEEEEEEECCCch
Confidence 457999999999999999999972211 0 000 0 00111111223333 3478999999999
Q ss_pred CchHHHHHHHHhcCeEEEEEcCCCCCchhHHH--HHHHHHh--cCCCEEEEEeCCCcCCC
Q 007325 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSET--VWRQADK--YGVPRICFVNKMDRLGA 222 (608)
Q Consensus 167 df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~--~~~~~~~--~~~p~ivviNK~D~~~~ 222 (608)
+|......+++.+|++|+|+|+++........ .+..+.. .++|+++|+||+|+...
T Consensus 94 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 153 (214)
T 2j1l_A 94 DYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKD 153 (214)
T ss_dssp -----------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSC
T ss_pred hhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhcc
Confidence 99988888999999999999998754333322 2233333 37999999999998754
No 142
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.67 E-value=3.1e-16 Score=149.86 Aligned_cols=115 Identities=13% Similarity=0.052 Sum_probs=78.5
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeec--CeeEEEEeCCCC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGH 165 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG~ 165 (608)
.+..+|+++|.+|+|||||+++|+......... . + .+.+.. ..+.++ ...+.+|||||+
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~-----~-t----------~~~~~~---~~~~~~~~~~~~~i~Dt~G~ 81 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYV-----P-T----------VFENFS---HVMKYKNEEFILHLWDTAGQ 81 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCC-----C-C----------SEEEEE---EEEEETTEEEEEEEEEECCS
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCCCccC-----C-e----------eeeeeE---EEEEECCEEEEEEEEECCCc
Confidence 345799999999999999999997322100000 0 0 011111 122233 356799999999
Q ss_pred CCchHHHHHHHHhcCeEEEEEcCCCCCchhHH-HHH-HHHHhc--CCCEEEEEeCCCcCC
Q 007325 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVW-RQADKY--GVPRICFVNKMDRLG 221 (608)
Q Consensus 166 ~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~-~~~-~~~~~~--~~p~ivviNK~D~~~ 221 (608)
.+|......+++.+|++|+|+|+++....... ..| ..+... ++|+++|+||+|+..
T Consensus 82 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 141 (194)
T 3reg_A 82 EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRK 141 (194)
T ss_dssp GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCC
T ss_pred HHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 99988888899999999999999975443332 223 333333 689999999999864
No 143
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.66 E-value=2e-15 Score=143.46 Aligned_cols=108 Identities=14% Similarity=0.082 Sum_probs=74.0
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCCCC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGH 165 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~ 165 (608)
.+..+|+++|.+|+|||||+++|+.... .. ++.+ |.......+.+++ ..+.+|||||+
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~--~~-----------~~~~-------t~~~~~~~~~~~~~~~~l~i~Dt~G~ 77 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTY--VQ-----------EESP-------EGGRFKKEIVVDGQSYLLLIRDEGGP 77 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSC--CC-----------CCCT-------TCEEEEEEEEETTEEEEEEEEECSSS
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCC--CC-----------CcCC-------CcceEEEEEEECCEEEEEEEEECCCC
Confidence 4457999999999999999999973211 10 0000 1111112334444 56788999999
Q ss_pred CCchHHHHHHHHhcCeEEEEEcCCCCCchhHH-HHHHHHHh----cCCCEEEEEeCCCcC
Q 007325 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK----YGVPRICFVNKMDRL 220 (608)
Q Consensus 166 ~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~-~~~~~~~~----~~~p~ivviNK~D~~ 220 (608)
.+|. +++.+|++++|+|+++....+.. ..+..+.. .++|+++|+||+|+.
T Consensus 78 ~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 132 (184)
T 3ihw_A 78 PELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAIS 132 (184)
T ss_dssp CCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCB
T ss_pred hhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 9886 78889999999999976544443 33344443 468999999999985
No 144
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.66 E-value=1.1e-15 Score=146.73 Aligned_cols=117 Identities=14% Similarity=0.030 Sum_probs=75.6
Q ss_pred CCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCCC
Q 007325 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPG 164 (608)
Q Consensus 87 ~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG 164 (608)
.....+|+++|.+|+|||||+++|+........ ..+++.+.....+.+++ ..+.+|||||
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g 81 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAH------------------EPENPEDTYERRIMVDKEEVTLVVYDIWE 81 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGGG------------------TTTSCTTEEEEEEEETTEEEEEEEECCCC
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCccC------------------CCCcccceEEEEEEECCEEEEEEEEecCC
Confidence 344579999999999999999999421111100 01112222222333443 5678999999
Q ss_pred CCCchH-HHHHHHHhcCeEEEEEcCCCCCchhHH-HHHHHHHh----cCCCEEEEEeCCCcCC
Q 007325 165 HVDFTL-EVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK----YGVPRICFVNKMDRLG 221 (608)
Q Consensus 165 ~~df~~-~~~~~l~~~D~~i~VvDa~~g~~~~t~-~~~~~~~~----~~~p~ivviNK~D~~~ 221 (608)
+.++.. ....+++.+|++|+|+|+++....... ..+..+.. .++|+++|+||+|+..
T Consensus 82 ~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 144 (195)
T 3cbq_A 82 QGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR 144 (195)
T ss_dssp CSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTT
T ss_pred CccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccc
Confidence 998765 556678899999999999864332222 22333332 3799999999999864
No 145
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.66 E-value=2.5e-16 Score=171.54 Aligned_cols=112 Identities=15% Similarity=0.173 Sum_probs=88.2
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCC-Cch
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV-DFT 169 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~-df~ 169 (608)
.+|+|+|.+|+|||||+|+|+.....+. ....|+|.+.....+.+++..+.||||||+. ++.
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~v-----------------s~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~ 306 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIV-----------------TDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETN 306 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCC-----------------CCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCC
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCcc-----------------CCCCCeeeeeEEEEEecCCeEEEEEECCCccccch
Confidence 6899999999999999999974321110 1123557777777788889999999999998 653
Q ss_pred --------HHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCC
Q 007325 170 --------LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (608)
Q Consensus 170 --------~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~ 221 (608)
.....+++.+|++|+|+|++++...+..++|+.+ .++|+++|+||+|+..
T Consensus 307 ~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l--~~~piivV~NK~DL~~ 364 (482)
T 1xzp_A 307 DLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVE 364 (482)
T ss_dssp TTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCC
T ss_pred hhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh--cCCCEEEEEECccccc
Confidence 3456788999999999999988777777777665 4889999999999854
No 146
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.66 E-value=2.5e-16 Score=153.60 Aligned_cols=119 Identities=14% Similarity=0.100 Sum_probs=79.4
Q ss_pred CCCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCC
Q 007325 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (608)
Q Consensus 86 ~~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 165 (608)
+.....+|+++|.+|+|||||+++|+....... +.+ ..+.+. .....+......+.||||||+
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~-------------~~~---t~~~~~-~~~~~~~~~~~~l~i~Dt~G~ 85 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPET-------------YVP---TVFENY-TACLETEEQRVELSLWDTSGS 85 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCCSS-------------CCC---CSEEEE-EEEEEC--CEEEEEEEEECCS
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhcCCCCCC-------------cCC---eeeeeE-EEEEEECCEEEEEEEEECCCC
Confidence 344557999999999999999999973221100 000 001111 112223334578999999999
Q ss_pred CCchHHHHHHHHhcCeEEEEEcCCCCCchhH-HHHH-HHHHhc--CCCEEEEEeCCCcCC
Q 007325 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQS-ETVW-RQADKY--GVPRICFVNKMDRLG 221 (608)
Q Consensus 166 ~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t-~~~~-~~~~~~--~~p~ivviNK~D~~~ 221 (608)
.+|......+++.+|++|+|+|+++...... ...| ..+... ++|+++|+||+|+..
T Consensus 86 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 145 (214)
T 3q3j_B 86 PYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRT 145 (214)
T ss_dssp GGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGG
T ss_pred HhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 9998888888999999999999998654443 2333 444443 789999999999864
No 147
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.66 E-value=2.7e-16 Score=152.50 Aligned_cols=115 Identities=12% Similarity=0.049 Sum_probs=77.0
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeec--CeeEEEEeCCCCC
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGHV 166 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG~~ 166 (608)
...+|+++|++|+|||||+++|+.... .. .. .. +. +... ...+.++ ...+.+|||||+.
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~--~~--~~-~~-t~----------~~~~---~~~~~~~~~~~~~~i~Dt~G~~ 68 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKF--PT--DY-IP-TV----------FDNF---SANVAVDGQIVNLGLWDTAGQE 68 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC--CS--SC-CC-SS----------CCCE---EEEEECSSCEEEEEEECCCCCC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--Cc--cC-CC-cc----------ceeE---EEEEEECCEEEEEEEEECCCcH
Confidence 457899999999999999999973221 10 00 00 00 1011 1122233 3689999999999
Q ss_pred CchHHHHHHHHhcCeEEEEEcCCCCCchhHH--HHHHHHHhc--CCCEEEEEeCCCcCCC
Q 007325 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSE--TVWRQADKY--GVPRICFVNKMDRLGA 222 (608)
Q Consensus 167 df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~--~~~~~~~~~--~~p~ivviNK~D~~~~ 222 (608)
+|......+++.+|++|+|+|+++....... ..+..+... ++|+++|+||+|+...
T Consensus 69 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 128 (212)
T 2j0v_A 69 DYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDD 128 (212)
T ss_dssp CCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTC
T ss_pred HHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhC
Confidence 9988888889999999999999875443332 233344443 8999999999998643
No 148
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.66 E-value=9.4e-17 Score=156.48 Aligned_cols=117 Identities=21% Similarity=0.196 Sum_probs=77.3
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC-eeEEEEeCCCCCC
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK-HRINIIDTPGHVD 167 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~-~~i~liDTPG~~d 167 (608)
...+|+++|.+|+|||||+++|+... ... ... ...+.+..........+. ..+.+|||||+.+
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~--~~~--~~~------------~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 73 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGR--FEK--NYN------------ATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEK 73 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCS--TTC--EEE------------TTTTEEEEEEEEEBTTSCEEEEEEEEECSGGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCC--CCC--CCC------------CccceeeEEEEEEeCCCcEEEEEEEecCCchh
Confidence 45799999999999999999996211 110 000 011111111111111111 6799999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHHH---hcCCCEEEEEeCCCcCC
Q 007325 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQAD---KYGVPRICFVNKMDRLG 221 (608)
Q Consensus 168 f~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~~---~~~~p~ivviNK~D~~~ 221 (608)
+.......++.+|++|+|+|++++...+....| ..+. ..++|+++|+||+|+..
T Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 131 (218)
T 4djt_A 74 KAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN 131 (218)
T ss_dssp TSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC-
T ss_pred hchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 888888889999999999999976554444333 3332 34789999999999854
No 149
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.65 E-value=1.3e-15 Score=148.97 Aligned_cols=115 Identities=18% Similarity=0.143 Sum_probs=76.3
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchH
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~ 170 (608)
-+|+++|.+|+|||||+++++...- .. ++.+ .-|.........+......+.||||+|+.+|..
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~~~f--~~-----------~~~~---Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~ 77 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMYDSF--DN-----------TYQA---TIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRS 77 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC--C------------------------CEEEEEECSSCEEEEEEECCSCTTTCGG
T ss_pred EEEEEECcCCcCHHHHHHHHHhCCC--CC-----------CcCC---ccceEEEEEEEEecceEEEEEEEECCCchhhhh
Confidence 5899999999999999999973211 10 0000 011111111122222346789999999999999
Q ss_pred HHHHHHHhcCeEEEEEcCCCCCchhHHH-HHHHHH---hcCCCEEEEEeCCCcCC
Q 007325 171 EVERALRVLDGAICLFDSVAGVEPQSET-VWRQAD---KYGVPRICFVNKMDRLG 221 (608)
Q Consensus 171 ~~~~~l~~~D~~i~VvDa~~g~~~~t~~-~~~~~~---~~~~p~ivviNK~D~~~ 221 (608)
....+++.+|++++|+|.++........ .|..+. ..++|+++|.||+|+..
T Consensus 78 l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~ 132 (216)
T 4dkx_A 78 LIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD 132 (216)
T ss_dssp GHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGG
T ss_pred HHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHh
Confidence 9999999999999999998644333322 223332 35789999999999754
No 150
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.65 E-value=5.6e-16 Score=149.99 Aligned_cols=114 Identities=13% Similarity=0.012 Sum_probs=77.3
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCCCCCC
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVD 167 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~d 167 (608)
..+|+++|.+|+|||||+++|+........ .. + .+.+. ...+..++ ..+.||||||+.+
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-----~~-t----------~~~~~---~~~~~~~~~~~~~~i~Dt~G~~~ 85 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFPEVY-----VP-T----------VFENY---VADIEVDGKQVELALWDTAGQED 85 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC-----------------------CCEE---EEEEEETTEEEEEEEEECTTCTT
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCCCcC-----CC-c----------ccceE---EEEEEECCEEEEEEEEECCCcHH
Confidence 368999999999999999999732211000 00 0 01111 11223333 5789999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCCCchhHH--HHHHHHHhc--CCCEEEEEeCCCcCCC
Q 007325 168 FTLEVERALRVLDGAICLFDSVAGVEPQSE--TVWRQADKY--GVPRICFVNKMDRLGA 222 (608)
Q Consensus 168 f~~~~~~~l~~~D~~i~VvDa~~g~~~~t~--~~~~~~~~~--~~p~ivviNK~D~~~~ 222 (608)
|......+++.+|++|+|+|+++....... ..+..+... ++|+++|+||+|+...
T Consensus 86 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 144 (207)
T 2fv8_A 86 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSD 144 (207)
T ss_dssp CTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGC
T ss_pred HHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhcc
Confidence 988888888999999999999874332222 233444443 8999999999998653
No 151
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.65 E-value=1.2e-17 Score=160.59 Aligned_cols=116 Identities=19% Similarity=0.211 Sum_probs=79.0
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCCCC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGH 165 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~ 165 (608)
+...+|+++|.+|+|||||+++|+... . ..+....++.+.....+.+++ ..+.||||||+
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 92 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDT--Y----------------TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 92 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCC--C----------------CCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCC--C----------------CCCcCCcccceEEEEEEEECCEEEEEEEEECCCc
Confidence 456899999999999999999995110 0 011122334444444555555 67999999999
Q ss_pred CCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHHHhc---CCCEEEEEeCCCcCC
Q 007325 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADKY---GVPRICFVNKMDRLG 221 (608)
Q Consensus 166 ~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~~~~---~~p~ivviNK~D~~~ 221 (608)
.+|......+++.+|++|+|+|+++.........| ..+... ++|+++|+||+|+..
T Consensus 93 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~ 152 (199)
T 3l0i_B 93 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT 152 (199)
T ss_dssp TTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC-
T ss_pred HhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCc
Confidence 99988888889999999999999986544443333 333332 789999999999864
No 152
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.65 E-value=5.5e-16 Score=148.93 Aligned_cols=117 Identities=14% Similarity=0.005 Sum_probs=77.0
Q ss_pred CCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCCC
Q 007325 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPG 164 (608)
Q Consensus 87 ~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG 164 (608)
.....+|+++|++|+|||||+++|+... .. .. + ...+.......+.+++ ..+.+|||||
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~--~~--~~---------~------~~t~~~~~~~~~~~~~~~~~~~i~Dt~G 77 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNG--YP--TE---------Y------IPTAFDNFSAVVSVDGRPVRLQLCDTAG 77 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC---------------------------CCSSEEEEEEEEETTEEEEEEEEECCC
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCC--CC--CC---------C------CCcccceeEEEEEECCEEEEEEEEECCC
Confidence 3455799999999999999999997321 00 00 0 0001111112334444 4677999999
Q ss_pred CCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHH--HHHHHHh--cCCCEEEEEeCCCcCCC
Q 007325 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSET--VWRQADK--YGVPRICFVNKMDRLGA 222 (608)
Q Consensus 165 ~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~--~~~~~~~--~~~p~ivviNK~D~~~~ 222 (608)
+.+|......+++.+|++|+|+|+++........ .+..+.. .++|+++|+||+|+...
T Consensus 78 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 139 (201)
T 2q3h_A 78 QDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLRED 139 (201)
T ss_dssp STTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGC
T ss_pred CHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhc
Confidence 9998877777889999999999998754433332 2333333 28999999999998653
No 153
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.65 E-value=7.3e-16 Score=148.47 Aligned_cols=115 Identities=14% Similarity=-0.011 Sum_probs=78.3
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCCCCC
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHV 166 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~ 166 (608)
...+|+++|.+|+|||||+++|+........ .. +. +... ...+.+++ ..+.+|||||+.
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-----~~-t~----------~~~~---~~~~~~~~~~~~l~i~Dt~G~~ 84 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVY-----VP-TV----------FENY---IADIEVDGKQVELALWDTAGQE 84 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSSC-----CC-SS----------CCCC---EEEEEETTEEEEEEEECCCCSG
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCccc-----CC-cc----------cceE---EEEEEECCEEEEEEEEECCCch
Confidence 3468999999999999999999732211000 00 00 0011 11223333 578999999999
Q ss_pred CchHHHHHHHHhcCeEEEEEcCCCCCchhHH--HHHHHHHhc--CCCEEEEEeCCCcCCC
Q 007325 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSE--TVWRQADKY--GVPRICFVNKMDRLGA 222 (608)
Q Consensus 167 df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~--~~~~~~~~~--~~p~ivviNK~D~~~~ 222 (608)
+|......+++.+|++|+|+|+++....... ..+..+... ++|+++|+||+|+...
T Consensus 85 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 144 (201)
T 2gco_A 85 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQD 144 (201)
T ss_dssp GGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTC
T ss_pred hHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcC
Confidence 9888888888999999999999874333322 233444444 8999999999998754
No 154
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.64 E-value=1.5e-16 Score=153.22 Aligned_cols=117 Identities=11% Similarity=0.065 Sum_probs=60.1
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeec----CeeEEEEeCCC
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN----KHRINIIDTPG 164 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~----~~~i~liDTPG 164 (608)
...+|+++|++|+|||||+++|+....... .. + ...+..+.....+.++ ...+.||||||
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~--~~---------~-----~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 82 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFL--KD---------Y-----AMTSGVEVVVAPVTIPDTTVSVELFLLDTAG 82 (208)
T ss_dssp EEEEEEEC--------------------------------------------------CEEEECTTSSEEEEEEEEETTT
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCccc--CC---------C-----CCccceEEEEEEEEECCcccEEEEEEEECCC
Confidence 456999999999999999999963210100 00 0 0001112233344444 46899999999
Q ss_pred CCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHH-HHHHHHh------cCCCEEEEEeCCCcCC
Q 007325 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQADK------YGVPRICFVNKMDRLG 221 (608)
Q Consensus 165 ~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~-~~~~~~~------~~~p~ivviNK~D~~~ 221 (608)
+.+|......+++.+|++|+|+|+++........ .+..+.. .++|+++|+||+|+..
T Consensus 83 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 146 (208)
T 2yc2_C 83 SDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPP 146 (208)
T ss_dssp THHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred cHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence 9999888888889999999999998765433333 3333433 4789999999999854
No 155
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.64 E-value=1.5e-15 Score=144.66 Aligned_cols=115 Identities=18% Similarity=0.124 Sum_probs=72.6
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCc
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 168 (608)
+..+|+++|.+|+|||||+++|+..... .. +.+ ..+.+. .....+......+.||||||+.+|
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~~----~~---------~~~---t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~ 82 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRFI----SE---------YDP---NLEDTY-SSEETVDHQPVHLRVMDTADLDTP 82 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCC----SC---------CCT---TCCEEE-EEEEEETTEEEEEEEEECCC---C
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCCC----cc---------cCC---Ccccee-eEEEEECCEEEEEEEEECCCCCcc
Confidence 4569999999999999999999733210 00 000 011111 111222223467889999999888
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCCCchhHHH-HHHHHHh------cCCCEEEEEeCCCcCC
Q 007325 169 TLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQADK------YGVPRICFVNKMDRLG 221 (608)
Q Consensus 169 ~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~-~~~~~~~------~~~p~ivviNK~D~~~ 221 (608)
.. +..+++.+|++|+|+|+++........ .+..+.. .++|+++|+||+|+..
T Consensus 83 ~~-~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 141 (187)
T 3c5c_A 83 RN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ 141 (187)
T ss_dssp CC-THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGG
T ss_pred hh-HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhh
Confidence 65 367889999999999998643333322 2233332 4899999999999853
No 156
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.64 E-value=1.9e-16 Score=165.14 Aligned_cols=117 Identities=19% Similarity=0.183 Sum_probs=81.7
Q ss_pred CCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC-eeEEEEeCCCC
Q 007325 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK-HRINIIDTPGH 165 (608)
Q Consensus 87 ~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~-~~i~liDTPG~ 165 (608)
.+.++.|+|+|.+|||||||+++|+.. ... +. + ....|+......+.+.+ ..+.||||||+
T Consensus 155 Lk~la~V~lvG~~nvGKSTLln~L~~~---~~~---i~------~------~~ftTl~p~~g~v~~~~~~~~~l~DtPG~ 216 (342)
T 1lnz_A 155 LKVLADVGLVGFPSVGKSTLLSVVSSA---KPK---IA------D------YHFTTLVPNLGMVETDDGRSFVMADLPGL 216 (342)
T ss_dssp EECCCCEEEESSTTSSHHHHHHHSEEE---CCE---ES------S------TTSSCCCCCEEEEECSSSCEEEEEEHHHH
T ss_pred hhhcCeeeeeCCCCCCHHHHHHHHHcC---CCc---cc------c------CCccccCceEEEEEeCCCceEEEecCCCC
Confidence 344678999999999999999999521 111 10 1 12336666666677765 78999999996
Q ss_pred CC-------chHHHHHHHHhcCeEEEEEcCCC---CCch-hHHHHHHHHHh-----cCCCEEEEEeCCCcCC
Q 007325 166 VD-------FTLEVERALRVLDGAICLFDSVA---GVEP-QSETVWRQADK-----YGVPRICFVNKMDRLG 221 (608)
Q Consensus 166 ~d-------f~~~~~~~l~~~D~~i~VvDa~~---g~~~-~t~~~~~~~~~-----~~~p~ivviNK~D~~~ 221 (608)
.+ +.....+.+..+|++|+|+|+++ .-.. ....++..+.. .++|+++|+||+|+..
T Consensus 217 i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~ 288 (342)
T 1lnz_A 217 IEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPE 288 (342)
T ss_dssp HHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTT
T ss_pred cccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCC
Confidence 43 45666677778999999999986 2222 22334445554 3789999999999864
No 157
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.63 E-value=1.2e-15 Score=144.63 Aligned_cols=111 Identities=22% Similarity=0.277 Sum_probs=69.3
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCC----
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV---- 166 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~---- 166 (608)
.+|+++|.+|+|||||+++|+... ... ....++|...... .+. .+++|||||+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~---~~~---------------~~~~~~t~~~~~~--~~~--~~~l~Dt~G~~~~~~ 59 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKK---VRR---------------GKRPGVTRKIIEI--EWK--NHKIIDMPGFGFMMG 59 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCC---CSS---------------SSSTTCTTSCEEE--EET--TEEEEECCCBSCCTT
T ss_pred cEEEEECCCCCCHHHHHHHHhCcC---Ccc---------------CCCCCccceeEEE--ecC--CEEEEECCCcccccc
Confidence 589999999999999999997221 000 0112334333322 223 78999999953
Q ss_pred -------CchHHHHHHHHh-cC---eEEEEEcCCCC-----------CchhHHHHHHHHHhcCCCEEEEEeCCCcCCCc
Q 007325 167 -------DFTLEVERALRV-LD---GAICLFDSVAG-----------VEPQSETVWRQADKYGVPRICFVNKMDRLGAN 223 (608)
Q Consensus 167 -------df~~~~~~~l~~-~D---~~i~VvDa~~g-----------~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~ 223 (608)
.|......+++. +| +++.|+|+... ...++.+++..+...++|+++|+||+|+....
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 138 (190)
T 2cxx_A 60 LPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV 138 (190)
T ss_dssp SCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH
T ss_pred CCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH
Confidence 344555555554 54 55566665431 11123334555666789999999999987643
No 158
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.63 E-value=8.3e-17 Score=159.75 Aligned_cols=144 Identities=16% Similarity=0.190 Sum_probs=87.4
Q ss_pred CCCCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCC
Q 007325 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG 164 (608)
Q Consensus 85 ~~~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 164 (608)
.+....++|+++|++|+|||||+|+|+.... ... .....++|.......+.+++..++||||||
T Consensus 24 ~~~~~~~~i~lvG~~g~GKStlin~l~g~~~---~~~-------------~~~~~~~t~~~~~~~~~~~~~~i~liDTpG 87 (239)
T 3lxx_A 24 EPRNSQLRIVLVGKTGAGKSATGNSILGRKV---FHS-------------GTAAKSITKKCEKRSSSWKETELVVVDTPG 87 (239)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHTSCC---SCC--------------------CCSCEEEEEEETTEEEEEEECCS
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHcCCCc---Ccc-------------CCCCCceeeeEEEEEEEeCCceEEEEECCC
Confidence 3445678999999999999999999972111 000 011124577777777888999999999999
Q ss_pred CCCc-------hHHHHHHH----HhcCeEEEEEcCCCCCchhHHHHHHHHH-----hcCCCEEEEEeCCCcCCCc-HH--
Q 007325 165 HVDF-------TLEVERAL----RVLDGAICLFDSVAGVEPQSETVWRQAD-----KYGVPRICFVNKMDRLGAN-FF-- 225 (608)
Q Consensus 165 ~~df-------~~~~~~~l----~~~D~~i~VvDa~~g~~~~t~~~~~~~~-----~~~~p~ivviNK~D~~~~~-~~-- 225 (608)
+.+. ..++.+.+ +.+|++|+|+|+..... .....+..+. ....|+++|+||+|+.... +.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~-~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~ 166 (239)
T 3lxx_A 88 IFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTE-EEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDY 166 (239)
T ss_dssp CC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSS-HHHHHHHHHHHHHHHHHGGGEEEEEECGGGC--------
T ss_pred ccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCH-HHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHH
Confidence 8763 22333333 34599999999975333 3333333332 2456999999999986542 22
Q ss_pred -----HHHHHHHHhhCCccEEEecc
Q 007325 226 -----RTRDMIVTNLGAKPLVVQLP 245 (608)
Q Consensus 226 -----~~~~~i~~~l~~~~~~~~~p 245 (608)
+.++++.+.++....+++.+
T Consensus 167 i~~~~~~l~~l~~~~~~~~~~~~~~ 191 (239)
T 3lxx_A 167 LREAPEDIQDLMDIFGDRYCALNNK 191 (239)
T ss_dssp ----CHHHHHHHHHHSSSEEECCTT
T ss_pred HHhchHHHHHHHHHcCCEEEEEECC
Confidence 34566666676654444443
No 159
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.62 E-value=6.9e-15 Score=138.12 Aligned_cols=106 Identities=14% Similarity=0.091 Sum_probs=70.8
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCCCCCC
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVD 167 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~d 167 (608)
..+|+++|.+|+|||||+++|+.... .. .. .+ .+... ...+..++ ..+.+|||||+.+
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~~~--~~---~~--~t----------~~~~~---~~~~~~~~~~~~l~i~Dt~G~~~ 66 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTGSY--QV---LE--KT----------ESEQY---KKEMLVDGQTHLVLIREEAGAPD 66 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHSCC--CC---CS--SC----------SSSEE---EEEEEETTEEEEEEEEECSSSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC--CC---cC--CC----------cceeE---EEEEEECCEEEEEEEEECCCCch
Confidence 46899999999999999999973221 10 00 00 01111 12223333 5689999999987
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHH-HHH---h---cCCCEEEEEeCCCcC
Q 007325 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWR-QAD---K---YGVPRICFVNKMDRL 220 (608)
Q Consensus 168 f~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~-~~~---~---~~~p~ivviNK~D~~ 220 (608)
..+++.+|++|+|+|+++.........|. .+. . .++|+++|+||+|+.
T Consensus 67 -----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (178)
T 2iwr_A 67 -----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 121 (178)
T ss_dssp -----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred -----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 35778899999999999754444444332 222 2 378999999999984
No 160
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.62 E-value=4.6e-16 Score=168.65 Aligned_cols=113 Identities=18% Similarity=0.213 Sum_probs=76.7
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchH
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~ 170 (608)
.+|+|+|++|+|||||+|+|+.....+.. ...|+|.+.....+.+++..++||||||+.++..
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~-----------------~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~ 287 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQSDRAIVT-----------------DLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSD 287 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHBSCCS-----------------CCTTCCHHHHHHEEEETTEEEEECC---------
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCccccc-----------------CCCCeeEEEEEEEEEECCEEEEEEECCccccchh
Confidence 47999999999999999999854321110 0124455555556667889999999999987654
Q ss_pred HHHH--------HHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCC
Q 007325 171 EVER--------ALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (608)
Q Consensus 171 ~~~~--------~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (608)
.+.. .++.+|++|+|+|++++...+...+++.+. +.|+++|+||+|+...
T Consensus 288 ~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~--~~piivV~NK~Dl~~~ 345 (462)
T 3geh_A 288 QVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVK--HRPLILVMNKIDLVEK 345 (462)
T ss_dssp -----------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHT--TSCEEEEEECTTSSCG
T ss_pred HHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhcc--CCcEEEEEECCCCCcc
Confidence 4433 456789999999999988888877777664 3799999999998754
No 161
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.62 E-value=1e-15 Score=145.12 Aligned_cols=116 Identities=13% Similarity=0.033 Sum_probs=77.3
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCc
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 168 (608)
...+|+++|.+|+|||||+++|+...... ++.+ ..+... .....+......+.+|||||+.+|
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~-------------~~~~---t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~ 68 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCFPE-------------NYVP---TVFENY-TASFEIDTQRIELSLWDTSGSPYY 68 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCS-------------SCCC---CSEEEE-EEEEECSSCEEEEEEEEECCSGGG
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCCCC-------------CCCC---ccceeE-EEEEEECCEEEEEEEEECCCChhh
Confidence 34689999999999999999997322100 0000 001111 011122223467899999999998
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCCCchhHH-HHH-HHHHh--cCCCEEEEEeCCCcCC
Q 007325 169 TLEVERALRVLDGAICLFDSVAGVEPQSE-TVW-RQADK--YGVPRICFVNKMDRLG 221 (608)
Q Consensus 169 ~~~~~~~l~~~D~~i~VvDa~~g~~~~t~-~~~-~~~~~--~~~p~ivviNK~D~~~ 221 (608)
......+++.+|++|+|+|+++....... ..| ..+.. .++|+++|+||+|+..
T Consensus 69 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 125 (184)
T 1m7b_A 69 DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 125 (184)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred hhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhc
Confidence 87777788999999999999875433332 233 33333 3789999999999864
No 162
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.61 E-value=5.5e-15 Score=155.66 Aligned_cols=117 Identities=20% Similarity=0.256 Sum_probs=76.9
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 167 (608)
+.++.|+|+|++|+|||||+|+|+ +.... .+...+.|.+.....+.+++..+.++||||+.+
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~---~~~~~---------------~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~ 238 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLT---GLTQK---------------VDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIR 238 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHH---CC--------------------------CCSCEEEEEETTEEEEEEECCCBCS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHH---CCCcc---------------ccCCcccccCCEEEEEEECCEEEEEEeCCCchh
Confidence 346779999999999999999996 21110 112234577777778888889999999999843
Q ss_pred c--------hHHHHHHHHhcCeEEEEEcCCCCC--ch-hHHHHHHHHHh---cCCCEEEEEeCCCcCCC
Q 007325 168 F--------TLEVERALRVLDGAICLFDSVAGV--EP-QSETVWRQADK---YGVPRICFVNKMDRLGA 222 (608)
Q Consensus 168 f--------~~~~~~~l~~~D~~i~VvDa~~g~--~~-~t~~~~~~~~~---~~~p~ivviNK~D~~~~ 222 (608)
- ...+...+..+|++++|+|+++.. .. +...+...+.. .++|+++|.||+|+...
T Consensus 239 ~lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~ 307 (364)
T 2qtf_A 239 GIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKING 307 (364)
T ss_dssp SCCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCS
T ss_pred cCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCc
Confidence 1 122334567889999999998764 12 22122223333 57899999999998654
No 163
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.60 E-value=1.8e-15 Score=156.24 Aligned_cols=70 Identities=14% Similarity=0.228 Sum_probs=55.4
Q ss_pred cCeeEEEEeCCCCCC-------------chHHHHHHHHhcCeEEEEEcC-CCCCchhH-HHHHHHHHhcCCCEEEEEeCC
Q 007325 153 NKHRINIIDTPGHVD-------------FTLEVERALRVLDGAICLFDS-VAGVEPQS-ETVWRQADKYGVPRICFVNKM 217 (608)
Q Consensus 153 ~~~~i~liDTPG~~d-------------f~~~~~~~l~~~D~~i~VvDa-~~g~~~~t-~~~~~~~~~~~~p~ivviNK~ 217 (608)
.+..++||||||+.+ +...+..+++.+|++|+|+|+ ..+...+. ..+++.+...++|+++|+||+
T Consensus 129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~ 208 (315)
T 1jwy_B 129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKL 208 (315)
T ss_dssp TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECT
T ss_pred CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCc
Confidence 457899999999865 556677889999999999997 55555333 467777777899999999999
Q ss_pred CcCCC
Q 007325 218 DRLGA 222 (608)
Q Consensus 218 D~~~~ 222 (608)
|+...
T Consensus 209 Dl~~~ 213 (315)
T 1jwy_B 209 DLMDK 213 (315)
T ss_dssp TSSCS
T ss_pred ccCCc
Confidence 98653
No 164
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.60 E-value=9.3e-15 Score=150.66 Aligned_cols=114 Identities=17% Similarity=0.229 Sum_probs=84.3
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEee-cCeeEEEEeCCCCCCc-
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPGHVDF- 168 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPG~~df- 168 (608)
.+|+++|.+|+|||||+++|+...... .....+.|+......+.+ ++..+++|||||+.+|
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~~~~-----------------~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 66 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNYSAF-----------------DTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFM 66 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCCCTG-----------------GGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc-----------------cccCcCCccceEEEEEEeCCceEEEEEECCCcHHHh
Confidence 589999999999999999996221110 111345577666666665 6789999999999988
Q ss_pred ----hHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHH----HHHh--cCCCEEEEEeCCCcCC
Q 007325 169 ----TLEVERALRVLDGAICLFDSVAGVEPQSETVWR----QADK--YGVPRICFVNKMDRLG 221 (608)
Q Consensus 169 ----~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~----~~~~--~~~p~ivviNK~D~~~ 221 (608)
.......++.+|++|+|+|+++.........|. .+.. .++|+++|+||+|+..
T Consensus 67 ~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~ 129 (307)
T 3r7w_A 67 ENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQ 129 (307)
T ss_dssp HHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred hhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccc
Confidence 455677788999999999999876555544432 2222 2899999999999875
No 165
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.59 E-value=3e-15 Score=153.20 Aligned_cols=136 Identities=16% Similarity=0.203 Sum_probs=84.4
Q ss_pred CCCceeEEEEcCCCCchHHHHHHHHHhhCCcc-------cceeec--------------cCCccccchhh--h------h
Q 007325 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNY-------KIGEVH--------------EGTATMDWMEQ--E------Q 137 (608)
Q Consensus 87 ~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~-------~~g~~~--------------~g~~~~d~~~~--e------~ 137 (608)
....++|+++|.+|+|||||+|+|+....... ..+.+. .|..+.+.... + .
T Consensus 23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~ 102 (299)
T 2aka_B 23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 102 (299)
T ss_dssp TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence 34568999999999999999999974322100 011000 01111111100 0 0
Q ss_pred ----hcceeEeecEEEEeec-CeeEEEEeCCCCCC-------------chHHHHHHHHhcCeEE-EEEcCCCCCchhHH-
Q 007325 138 ----ERGITITSAATTTYWN-KHRINIIDTPGHVD-------------FTLEVERALRVLDGAI-CLFDSVAGVEPQSE- 197 (608)
Q Consensus 138 ----~~giTi~~~~~~~~~~-~~~i~liDTPG~~d-------------f~~~~~~~l~~~D~~i-~VvDa~~g~~~~t~- 197 (608)
..|++.......+... ...++||||||+.+ +...+..+++.+|.+| +|+|++.+...+..
T Consensus 103 i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~ 182 (299)
T 2aka_B 103 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 182 (299)
T ss_dssp HCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred hcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence 0233222222222222 47899999999752 4455667888888776 69999988777664
Q ss_pred HHHHHHHhcCCCEEEEEeCCCcCCC
Q 007325 198 TVWRQADKYGVPRICFVNKMDRLGA 222 (608)
Q Consensus 198 ~~~~~~~~~~~p~ivviNK~D~~~~ 222 (608)
.+++.+...++|+++|+||+|+...
T Consensus 183 ~~~~~~~~~~~~~i~V~NK~Dl~~~ 207 (299)
T 2aka_B 183 KIAKEVDPQGQRTIGVITKLDLMDE 207 (299)
T ss_dssp HHHHHHCTTCSSEEEEEECGGGSCT
T ss_pred HHHHHhCCCCCeEEEEEEccccCCC
Confidence 4666676678999999999998653
No 166
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.59 E-value=2.2e-15 Score=145.90 Aligned_cols=117 Identities=13% Similarity=0.035 Sum_probs=77.4
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 167 (608)
+...+|+++|.+|+|||||+++|+...... ++.+ ..+.+. .....+......+.||||||+.+
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~-------------~~~~---t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~ 88 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPE-------------NYVP---TVFENY-TASFEIDTQRIELSLWDTSGSPY 88 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCS-------------SCCC---CSEEEE-EEEEESSSSEEEEEEEEECCSGG
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCC-------------CcCC---ccceeE-EEEEEECCEEEEEEEEeCCCcHh
Confidence 345799999999999999999997321110 0000 001111 01111222346899999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCCCchhHH-HHH-HHHHh--cCCCEEEEEeCCCcCC
Q 007325 168 FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVW-RQADK--YGVPRICFVNKMDRLG 221 (608)
Q Consensus 168 f~~~~~~~l~~~D~~i~VvDa~~g~~~~t~-~~~-~~~~~--~~~p~ivviNK~D~~~ 221 (608)
|......+++.+|++|+|+|+++....... ..| ..+.. .++|+++|+||+|+..
T Consensus 89 ~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 89 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 146 (205)
T ss_dssp GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred hhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhcc
Confidence 887777788999999999999875433332 223 33333 3789999999999864
No 167
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.36 E-value=1.3e-16 Score=153.99 Aligned_cols=118 Identities=15% Similarity=0.057 Sum_probs=78.7
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 167 (608)
.+..+|+++|.+|+|||||+++|+...-..... . +..+ .. .....+......+.+|||||+.+
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-----~-t~~~----------~~-~~~~~~~~~~~~l~i~Dt~G~~~ 90 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYI-----P-TVFD----------NY-SANVMVDGKPVNLGLWDTAGQED 90 (204)
Confidence 445789999999999999999996321100000 0 0000 00 01111222345677999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCCCchhHH--HHHHHHHhc--CCCEEEEEeCCCcCCC
Q 007325 168 FTLEVERALRVLDGAICLFDSVAGVEPQSE--TVWRQADKY--GVPRICFVNKMDRLGA 222 (608)
Q Consensus 168 f~~~~~~~l~~~D~~i~VvDa~~g~~~~t~--~~~~~~~~~--~~p~ivviNK~D~~~~ 222 (608)
|......+++.+|++|+|+|+++....... ..+..+... ++|+++|+||+|+...
T Consensus 91 ~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~ 149 (204)
T 3th5_A 91 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 149 (204)
Confidence 998888899999999999999876444333 223333333 7999999999998643
No 168
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.57 E-value=9.4e-15 Score=151.45 Aligned_cols=116 Identities=13% Similarity=0.037 Sum_probs=79.4
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCCCC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGH 165 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~ 165 (608)
....+|+++|.+|+|||||+++++...-.... .+.+.......+..++ ..+.+|||||+
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~-------------------~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~ 213 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEY-------------------IPTVFDNYSANVMVDGKPVNLGLWDTAGL 213 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSC-------------------CCCSEEEEEEEEEETTEEEEEEEEEECCC
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCccc-------------------CCcccceeEEEEEECCEEEEEEEEeCCCc
Confidence 34578999999999999999999732211000 0111111122333444 45669999999
Q ss_pred CCchHHHHHHHHhcCeEEEEEcCCCCCchhHHH--HHHHHHhc--CCCEEEEEeCCCcCCC
Q 007325 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSET--VWRQADKY--GVPRICFVNKMDRLGA 222 (608)
Q Consensus 166 ~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~--~~~~~~~~--~~p~ivviNK~D~~~~ 222 (608)
.+|......+++.+|++|+|+|+++........ .+..+... ++|+++|+||+|+...
T Consensus 214 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 274 (332)
T 2wkq_A 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 274 (332)
T ss_dssp GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTC
T ss_pred hhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccc
Confidence 999888888889999999999999755443332 22344443 8999999999998643
No 169
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.57 E-value=5e-14 Score=148.30 Aligned_cols=116 Identities=20% Similarity=0.212 Sum_probs=77.1
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 167 (608)
....+|+++|++|+|||||+++|+ +.....+. ..+.|.......+.+.+..+.+|||||+.+
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~---~~~~~~~~---------------~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~ 226 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALT---TAKPEIAS---------------YPFTTRGINVGQFEDGYFRYQIIDTPGLLD 226 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHC---SSCCEEEC---------------CTTCSSCEEEEEEEETTEEEEEEECTTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHh---CCCCccCC---------------CCCeeeceeEEEEEecCceEEEEeCCCccc
Confidence 456799999999999999999995 22111111 123344445556666788999999999876
Q ss_pred chH--------HHHHH-HHhcCeEEEEEcCCCCC--chhH-HHHHHHHHh-c-CCCEEEEEeCCCcCC
Q 007325 168 FTL--------EVERA-LRVLDGAICLFDSVAGV--EPQS-ETVWRQADK-Y-GVPRICFVNKMDRLG 221 (608)
Q Consensus 168 f~~--------~~~~~-l~~~D~~i~VvDa~~g~--~~~t-~~~~~~~~~-~-~~p~ivviNK~D~~~ 221 (608)
+.. ....+ ...+|++++|+|++... .... ...+..+.. . ++|+++|+||+|+..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~ 294 (357)
T 2e87_A 227 RPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVAD 294 (357)
T ss_dssp SCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCC
T ss_pred cchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCC
Confidence 421 11112 23589999999987643 3332 233344433 2 899999999999864
No 170
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.56 E-value=3.5e-14 Score=138.13 Aligned_cols=114 Identities=19% Similarity=0.244 Sum_probs=78.4
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 167 (608)
.+.++|+++|++|+|||||+++|+...... .... + .. |+.. .+....+++|||||+.+
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~-~~~~---------~-----~~--~~~~-----~~~~~~~~l~Dt~G~~~ 67 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRP-TVVS---------Q-----EP--LSAA-----DYDGSGVTLVDFPGHVK 67 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCC-BCCC---------S-----SC--EEET-----TGGGSSCEEEECCCCGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCC-eeee---------c-----Cc--eEEE-----EeeCceEEEEECCCcHH
Confidence 345799999999999999999997332110 0000 0 00 1111 11457899999999999
Q ss_pred chHHHHHHHHh----cCeEEEEEcCC---CCCchhHHHHHHHHHh------cCCCEEEEEeCCCcCCCc
Q 007325 168 FTLEVERALRV----LDGAICLFDSV---AGVEPQSETVWRQADK------YGVPRICFVNKMDRLGAN 223 (608)
Q Consensus 168 f~~~~~~~l~~----~D~~i~VvDa~---~g~~~~t~~~~~~~~~------~~~p~ivviNK~D~~~~~ 223 (608)
|...+..+++. +|++|+|+|++ +........+...+.. .++|+++|+||+|+....
T Consensus 68 ~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 136 (218)
T 1nrj_B 68 LRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 136 (218)
T ss_dssp GTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred HHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccC
Confidence 99888888887 89999999998 3333333322222221 589999999999997754
No 171
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.54 E-value=9.1e-15 Score=138.66 Aligned_cols=115 Identities=15% Similarity=0.139 Sum_probs=71.6
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEee-----cCeeEEEEeCCCC
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-----NKHRINIIDTPGH 165 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~-----~~~~i~liDTPG~ 165 (608)
.+|+++|.+|+|||||+++|+..... ..+.. ....|+ +.....+.+ ....+.+|||||+
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~--~~~~~------------~~t~g~--~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 66 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKS--DLGMQ------------SATVGI--DVKDWPIQIRDKRKRDLVLNVWDFAGR 66 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-------------------------CSE--EEEEEEC---------CEEEEEEECSH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCc--cCCCc------------ceeccE--EeEEeeeccccCCCCceEEEEEecCCC
Confidence 47999999999999999999521000 00000 000111 111111111 3568999999999
Q ss_pred CCchHHHHHHHHhcCeEEEEEcCCCCCc-hhHH-HHHHHHHh--cCCCEEEEEeCCCcCC
Q 007325 166 VDFTLEVERALRVLDGAICLFDSVAGVE-PQSE-TVWRQADK--YGVPRICFVNKMDRLG 221 (608)
Q Consensus 166 ~df~~~~~~~l~~~D~~i~VvDa~~g~~-~~t~-~~~~~~~~--~~~p~ivviNK~D~~~ 221 (608)
.+|......+++.+|++++|+|.+++.. .... ..+..+.. .++|+++|.||+|+..
T Consensus 67 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 126 (184)
T 2zej_A 67 EEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSD 126 (184)
T ss_dssp HHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCC
T ss_pred HHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCccc
Confidence 8887777778899999999999987632 1222 22233322 3789999999999864
No 172
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.53 E-value=4.2e-14 Score=137.70 Aligned_cols=116 Identities=16% Similarity=0.116 Sum_probs=70.5
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCCCCC
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHV 166 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~ 166 (608)
...+|+|+|.+|+|||||+++|+.....+.. ++ + ..|.+. ....+.+++ ..+.+|||+|..
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~-----------~~-~---~~g~d~--~~~~i~~~~~~~~l~~~Dt~g~~ 98 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDS-----------DC-E---VLGEDT--YERTLMVDGESATIILLDMWENK 98 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCC-----------C-------CCTTE--EEEEEEETTEEEEEEEECCTTTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCC-----------cC-C---ccceee--EEEEEEECCeeeEEEEeecCCCc
Confidence 3578999999999999999999621111100 00 0 011111 112233444 457899999987
Q ss_pred C-chHHHHHHHHhcCeEEEEEcCCCCCchhHHH-HHHHHHh----cCCCEEEEEeCCCcCC
Q 007325 167 D-FTLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQADK----YGVPRICFVNKMDRLG 221 (608)
Q Consensus 167 d-f~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~-~~~~~~~----~~~p~ivviNK~D~~~ 221 (608)
. +......+++.+|++|+|+|.++........ .+..+.. .++|+++|.||+|+..
T Consensus 99 ~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~ 159 (211)
T 2g3y_A 99 GENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR 159 (211)
T ss_dssp HHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGG
T ss_pred chhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhc
Confidence 6 3322333456789999999998643322222 2333432 3799999999999853
No 173
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.51 E-value=3.1e-14 Score=157.97 Aligned_cols=117 Identities=18% Similarity=0.173 Sum_probs=79.3
Q ss_pred CCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeec------EEEE--eecCeeEE
Q 007325 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSA------ATTT--YWNKHRIN 158 (608)
Q Consensus 87 ~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~------~~~~--~~~~~~i~ 158 (608)
..+..+|+++|.+|+|||||+++|+..... ... ....|.++... ...+ ...+..++
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~----~~~------------~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~ 101 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFD----PKE------------SQTHGLNVVTKQAPNIKGLENDDELKECLFH 101 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC---------------------------CCCEEEEEGGGSGGGTTCSTTTTCEEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCC----CCC------------CCccceEEEEeccccccceeecCCCceEEEE
Confidence 344579999999999999999999622110 000 00011111100 0000 11357899
Q ss_pred EEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcC--CCEEEEEeCCCcCC
Q 007325 159 IIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYG--VPRICFVNKMDRLG 221 (608)
Q Consensus 159 liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~--~p~ivviNK~D~~~ 221 (608)
+|||||+..|.......++.+|++|+|+|++.. ......+..+...+ +|+++|+||+|+..
T Consensus 102 i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~ 164 (535)
T 3dpu_A 102 FWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENP 164 (535)
T ss_dssp EECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCT
T ss_pred EEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCccc
Confidence 999999999988888889999999999999864 44455566666654 99999999999864
No 174
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.49 E-value=2.1e-13 Score=130.46 Aligned_cols=114 Identities=15% Similarity=0.101 Sum_probs=69.5
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCCCCCC
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVD 167 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~d 167 (608)
..+|+++|.+|+|||||+++|+.....+.. ++. ..|.+. ....+.+++ ..+.+|||+|...
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~-----------~~~----~~~~~~--~~~~~~~~~~~~~l~~~Dt~~~~~ 68 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDS-----------DXE----VLGEDT--YERTLMVDGESATIILLDMWENKG 68 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC---------------G----GGCTTE--EEEEEEETTEEEEEEEECCCCC--
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCc-----------ccc----ccceeE--EEEEEEECCeEEEEEEEEeccCcc
Confidence 468999999999999999999743221110 000 011111 112233444 3567899999765
Q ss_pred -chHHHHHHHHhcCeEEEEEcCCCCCchhHHH-HHHHHHh----cCCCEEEEEeCCCcC
Q 007325 168 -FTLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQADK----YGVPRICFVNKMDRL 220 (608)
Q Consensus 168 -f~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~-~~~~~~~----~~~p~ivviNK~D~~ 220 (608)
+......+++.+|++++|+|.++........ .+..+.. .++|+++|.||+|+.
T Consensus 69 ~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~ 127 (192)
T 2cjw_A 69 ENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV 127 (192)
T ss_dssp --CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCG
T ss_pred hhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhh
Confidence 2223345678899999999998643333222 2333332 378999999999975
No 175
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.48 E-value=6.1e-14 Score=147.49 Aligned_cols=127 Identities=17% Similarity=0.132 Sum_probs=73.1
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhh---CCcccceeeccCCcccc------chh---hhhhcceeEeecEE-------
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYT---GRNYKIGEVHEGTATMD------WME---QEQERGITITSAAT------- 148 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~---g~~~~~g~~~~g~~~~d------~~~---~e~~~giTi~~~~~------- 148 (608)
.+.++|+|+|++|+|||||+++|.... |........+.+.+..+ ... .....+..+.....
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~ 156 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGV 156 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccch
Confidence 456899999999999999999997432 22212222222222211 000 00111222211111
Q ss_pred ---------EEeecCeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCc
Q 007325 149 ---------TTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDR 219 (608)
Q Consensus 149 ---------~~~~~~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~ 219 (608)
.+.+.++.++||||||... .....+..+|++|+|+|+..+...+... . ...++|.++|+||+|+
T Consensus 157 ~~~t~d~i~~~~~~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~--~--~~~~~p~ivVlNK~Dl 229 (355)
T 3p32_A 157 TRATRETVVLLEAAGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK--K--GVLELADIVVVNKADG 229 (355)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC--T--TSGGGCSEEEEECCCG
T ss_pred hHHHHHHHHHHhhCCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH--H--hHhhcCCEEEEECCCC
Confidence 1133678999999999655 2334458899999999998654432211 1 1134699999999998
Q ss_pred CC
Q 007325 220 LG 221 (608)
Q Consensus 220 ~~ 221 (608)
..
T Consensus 230 ~~ 231 (355)
T 3p32_A 230 EH 231 (355)
T ss_dssp GG
T ss_pred cC
Confidence 54
No 176
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.48 E-value=2.9e-13 Score=130.74 Aligned_cols=118 Identities=15% Similarity=0.195 Sum_probs=76.2
Q ss_pred CCCCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCC
Q 007325 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG 164 (608)
Q Consensus 85 ~~~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 164 (608)
.+.....+|+++|++|+|||||+++|+ |.... .. .....|.|.... .+.+++ .+.++||||
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~---g~~~~-~~------------~~~~~G~~~~~~--~~~~~~-~~~l~Dt~G 81 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLT---NQKSL-AR------------TSKTPGRTQLIN--LFEVAD-GKRLVDLPG 81 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTC---CC--------------------------CCEE--EEEEET-TEEEEECCC
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHh---CCCcc-cc------------ccCCCccceeeE--EEEecC-CEEEEECcC
Confidence 344556789999999999999999995 32100 00 011123333222 233333 688999999
Q ss_pred CCCc----------hHHHHHHH---HhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCC
Q 007325 165 HVDF----------TLEVERAL---RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (608)
Q Consensus 165 ~~df----------~~~~~~~l---~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~ 221 (608)
+.+. ...+...+ +.+|++++|+|+..+.......+.+.+...++|.+++.||+|+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s 151 (210)
T 1pui_A 82 YGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLA 151 (210)
T ss_dssp CC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSC
T ss_pred CcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCC
Confidence 8642 22233333 467999999999988776666666777788999999999999764
No 177
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.47 E-value=1.8e-13 Score=137.79 Aligned_cols=116 Identities=14% Similarity=0.115 Sum_probs=80.4
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCc
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 168 (608)
+..+|+++|++|+|||||+|+|+...... . ....+.|.......+.+++..++||||||+.+|
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~-----------~------~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~ 97 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVR-----------V------SPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEA 97 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSC-----------C------CSSCC-CCCCEEEEEEETTEEEEEEECCCSEET
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcc-----------c------CCCCCcceeeEEEEEEECCeeEEEEECCCCCCc
Confidence 45799999999999999999997322100 0 112344666667777889999999999999887
Q ss_pred hHHHHHH---HH------hcCeEEEEEcCCC-CCchhHHHHHHHHHhc-----CCCEEEEEeCCCcCC
Q 007325 169 TLEVERA---LR------VLDGAICLFDSVA-GVEPQSETVWRQADKY-----GVPRICFVNKMDRLG 221 (608)
Q Consensus 169 ~~~~~~~---l~------~~D~~i~VvDa~~-g~~~~t~~~~~~~~~~-----~~p~ivviNK~D~~~ 221 (608)
......+ +. .+|++++|+|... ........+++.+... ..|+++|+||+|+..
T Consensus 98 ~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 98 GYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp TEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred ccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 4332222 32 6799999987764 3444444555555442 248999999999853
No 178
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.47 E-value=3.6e-13 Score=153.35 Aligned_cols=67 Identities=15% Similarity=0.158 Sum_probs=54.9
Q ss_pred eeEEEEeCCCCCC---chHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHH-HHHhcCCCEEEEEeCCCcCC
Q 007325 155 HRINIIDTPGHVD---FTLEVERALRVLDGAICLFDSVAGVEPQSETVWR-QADKYGVPRICFVNKMDRLG 221 (608)
Q Consensus 155 ~~i~liDTPG~~d---f~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~-~~~~~~~p~ivviNK~D~~~ 221 (608)
..++||||||+.+ ....+..+++.+|++|+|+|++.+........|. .+...+.|+++|+||+|+..
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~ 244 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVR 244 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGGG
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECccccc
Confidence 4699999999765 4556678889999999999999888777777775 45556889999999999854
No 179
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.45 E-value=6.2e-13 Score=127.60 Aligned_cols=114 Identities=15% Similarity=0.138 Sum_probs=76.5
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCCCCCC
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVD 167 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~d 167 (608)
..+|+++|+.|+|||||+++|+....... ....++.......+.+++ ..+.+|||||+..
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~------------------~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~ 66 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLE------------------SKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 66 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---------------------CCCSCEEEEEEEEETTEEEEEEEEECSSGGG
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCC------------------CCCccceeEEEEEEEECCEEEEEEEEECCCchh
Confidence 46899999999999999999973211000 001112222333445555 4678899999988
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCCCchhHHHHH-HHHHh---cCCCEEEEEeCCCcCC
Q 007325 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 221 (608)
Q Consensus 168 f~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~-~~~~~---~~~p~ivviNK~D~~~ 221 (608)
|.......++.+|++++|+|..+.........| ..+.. .+.|+++|+||+|+..
T Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~ 124 (199)
T 2f9l_A 67 YRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH 124 (199)
T ss_dssp TTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred hhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc
Confidence 877777778889999999999875433332222 33322 4689999999999853
No 180
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.45 E-value=7.9e-14 Score=136.01 Aligned_cols=124 Identities=18% Similarity=0.254 Sum_probs=73.5
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceee--ccCCccccchhhhhhcceeEee-cE---EEE----------e
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEV--HEGTATMDWMEQEQERGITITS-AA---TTT----------Y 151 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~--~~g~~~~d~~~~e~~~giTi~~-~~---~~~----------~ 151 (608)
.+.++|+++|++|+|||||+++|+.......+.+.+ +.+.+ .|....+ ..|+++.. .. ..+ .
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~-~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSK-ADYERVR-RFGIKAEAISTGKECHLDAHMIYHRLKK 105 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCH-HHHHHHH-TTTCEEEECCCTTCSSCCHHHHHTTGGG
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCc-hhHHHHH-hCCCcEEEecCCceeecccHHHHHHHHh
Confidence 457899999999999999999998664433222222 22211 1221111 12333111 00 011 3
Q ss_pred ecCeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcC
Q 007325 152 WNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (608)
Q Consensus 152 ~~~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~ 220 (608)
+.+..+++|||+|+.+..... ....+.+++|+|+..+... .+......++|.++|+||+|+.
T Consensus 106 ~~~~d~iiidt~G~~~~~~~~---~~~~~~~i~vvd~~~~~~~----~~~~~~~~~~~~iiv~NK~Dl~ 167 (221)
T 2wsm_A 106 FSDCDLLLIENVGNLICPVDF---DLGENYRVVMVSVTEGDDV----VEKHPEIFRVADLIVINKVALA 167 (221)
T ss_dssp GTTCSEEEEEEEEBSSGGGGC---CCSCSEEEEEEEGGGCTTH----HHHCHHHHHTCSEEEEECGGGH
T ss_pred cCCCCEEEEeCCCCCCCCchh---ccccCcEEEEEeCCCcchh----hhhhhhhhhcCCEEEEecccCC
Confidence 356789999999952211100 0135889999999887432 2333344578999999999974
No 181
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.45 E-value=6.9e-13 Score=133.99 Aligned_cols=117 Identities=16% Similarity=0.109 Sum_probs=79.9
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCc
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 168 (608)
...+|+++|++|+|||||+|+|+.... .... ...+.|.......+.+++..++||||||+.++
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~--~~~~---------------~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~ 100 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERV--VSIS---------------PFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEG 100 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCC--SCCC---------------SSSCCCSSCEEEEEEETTEEEEEEECCCSEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCc--cccc---------------CCCCcceeeEEEEEeeCCeEEEEEECCCCCCC
Confidence 357999999999999999999973211 0000 11233444555566778899999999999876
Q ss_pred h---HHHHHHHH------hcCeEEEEEcCCC-CCchhHHHHHHHHHhc-C----CCEEEEEeCCCcCCC
Q 007325 169 T---LEVERALR------VLDGAICLFDSVA-GVEPQSETVWRQADKY-G----VPRICFVNKMDRLGA 222 (608)
Q Consensus 169 ~---~~~~~~l~------~~D~~i~VvDa~~-g~~~~t~~~~~~~~~~-~----~p~ivviNK~D~~~~ 222 (608)
. ......+. .+|++|+|+|... .........++.+... + +|+++|+||+|+...
T Consensus 101 ~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 101 GYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp TEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred ccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 4 23333332 5899999987754 3444555666655432 3 699999999998653
No 182
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.44 E-value=2.1e-13 Score=129.78 Aligned_cols=126 Identities=17% Similarity=0.212 Sum_probs=80.2
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 167 (608)
...++|+++|.+|+|||||+++|+...... ..... ..+++. .+.+..+.+|||||+.+
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~-~~~~~--------------~~~~~~-------~~~~~~~~l~Dt~G~~~ 103 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRP-TVVSQ--------------EPLSAA-------DYDGSGVTLVDFPGHVK 103 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC----------------------------------CCCCTTCSEEEETTCCB
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCc-ccccC--------------CCceee-------eecCCeEEEEECCCCch
Confidence 456799999999999999999997332110 00000 011111 12567899999999999
Q ss_pred chHHHHHHHHh----cCeEEEEEcCC-CCCch-hHHHHHHHHHh-------cCCCEEEEEeCCCcCCC-cHHHHHHHHHH
Q 007325 168 FTLEVERALRV----LDGAICLFDSV-AGVEP-QSETVWRQADK-------YGVPRICFVNKMDRLGA-NFFRTRDMIVT 233 (608)
Q Consensus 168 f~~~~~~~l~~----~D~~i~VvDa~-~g~~~-~t~~~~~~~~~-------~~~p~ivviNK~D~~~~-~~~~~~~~i~~ 233 (608)
|...+..+++. +|++|+|+|++ ..... .....+..+.. .++|+++|+||+|+... ...+..+.+.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~ 183 (193)
T 2ged_A 104 LRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALES 183 (193)
T ss_dssp SSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHHHH
Confidence 87777777765 89999999998 32111 11122222211 38999999999999764 35555666555
Q ss_pred hh
Q 007325 234 NL 235 (608)
Q Consensus 234 ~l 235 (608)
.+
T Consensus 184 ~l 185 (193)
T 2ged_A 184 EI 185 (193)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 183
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.43 E-value=1.3e-13 Score=144.82 Aligned_cols=135 Identities=17% Similarity=0.174 Sum_probs=80.5
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceee--ccC-------------------Cccccchh--hhh-------
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEV--HEG-------------------TATMDWME--QEQ------- 137 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~--~~g-------------------~~~~d~~~--~e~------- 137 (608)
...+.|+++|.+|+|||||+|+|+.........+.+ .++ ..+.++.. .+.
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 346899999999999999999996322110000000 000 00122221 111
Q ss_pred ---hcceeEeecEEEEeec-CeeEEEEeCCCCCC-------------chHHHHHHHHhc-CeEEEEEcCCCCCchhHH-H
Q 007325 138 ---ERGITITSAATTTYWN-KHRINIIDTPGHVD-------------FTLEVERALRVL-DGAICLFDSVAGVEPQSE-T 198 (608)
Q Consensus 138 ---~~giTi~~~~~~~~~~-~~~i~liDTPG~~d-------------f~~~~~~~l~~~-D~~i~VvDa~~g~~~~t~-~ 198 (608)
..|+........+... ...++||||||+.+ +...+..+++.. |++++|+|+..+...+.. .
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~ 188 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 188 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence 0344333333333332 57899999999753 334455566554 456667888877666654 3
Q ss_pred HHHHHHhcCCCEEEEEeCCCcCCC
Q 007325 199 VWRQADKYGVPRICFVNKMDRLGA 222 (608)
Q Consensus 199 ~~~~~~~~~~p~ivviNK~D~~~~ 222 (608)
+++.+...+.|+++|+||+|+...
T Consensus 189 i~~~~~~~~~~~i~V~NK~Dl~~~ 212 (353)
T 2x2e_A 189 VAKEVDPQGQRTIGVITKLDLMDE 212 (353)
T ss_dssp HHHHHCTTCTTEEEEEECGGGSCT
T ss_pred HHHHhCcCCCceEEEeccccccCc
Confidence 667776778999999999998653
No 184
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.42 E-value=5.1e-13 Score=142.53 Aligned_cols=117 Identities=20% Similarity=0.274 Sum_probs=76.2
Q ss_pred CCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC-eeEEEEeCCCC
Q 007325 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK-HRINIIDTPGH 165 (608)
Q Consensus 87 ~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~-~~i~liDTPG~ 165 (608)
.+....|+|+|++|||||||+++|. +....... + ...|+......+.+++ ..+.++||||+
T Consensus 154 lk~g~~VgLVG~~gAGKSTLL~~Ls---g~~~~i~~---------~------~ftTl~p~~G~V~~~~~~~~~l~DtpGl 215 (416)
T 1udx_A 154 LMLIADVGLVGYPNAGKSSLLAAMT---RAHPKIAP---------Y------PFTTLSPNLGVVEVSEEERFTLADIPGI 215 (416)
T ss_dssp ECCSCSEEEECCGGGCHHHHHHHHC---SSCCEECC---------C------TTCSSCCEEEEEECSSSCEEEEEECCCC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHH---cCCccccC---------c------ccceecceeeEEEecCcceEEEEecccc
Confidence 3455789999999999999999994 33221111 1 1224444555566665 78999999998
Q ss_pred CC-------chHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHh-----cCCCEEEEEeCCCcCC
Q 007325 166 VD-------FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK-----YGVPRICFVNKMDRLG 221 (608)
Q Consensus 166 ~d-------f~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~-----~~~p~ivviNK~D~~~ 221 (608)
.+ +.....+.+..+|.+++|+|++.....+....++++.. .+.|.++|+||+|+..
T Consensus 216 i~~a~~~~~L~~~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~ 283 (416)
T 1udx_A 216 IEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLE 283 (416)
T ss_dssp CCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSC
T ss_pred ccchhhhhhhhHHHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhh
Confidence 65 23344555667899999999971111122222333322 3689999999999764
No 185
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.40 E-value=6.4e-13 Score=147.23 Aligned_cols=144 Identities=19% Similarity=0.188 Sum_probs=92.1
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCcc----c---------cch----hhhhhc-----ceeEee
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTAT----M---------DWM----EQEQER-----GITITS 145 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~----~---------d~~----~~e~~~-----giTi~~ 145 (608)
...+.|+|+|++|+|||||+|+|+.........+. .++++. . +.. ..+.-+ |.....
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~-~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~ 141 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGP-EPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN 141 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCS-SCCCCSEEEEECCSSSEEECCC------------------CCCT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCC-CCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence 46789999999999999999999844321000110 011100 0 000 000000 000111
Q ss_pred cEEEEeecC---eeEEEEeCCCCCC-----------chHHHHHHHHhcCeEEEEEcCCC-CCchhHHHHHHHHHhcCCCE
Q 007325 146 AATTTYWNK---HRINIIDTPGHVD-----------FTLEVERALRVLDGAICLFDSVA-GVEPQSETVWRQADKYGVPR 210 (608)
Q Consensus 146 ~~~~~~~~~---~~i~liDTPG~~d-----------f~~~~~~~l~~~D~~i~VvDa~~-g~~~~t~~~~~~~~~~~~p~ 210 (608)
.+..+.+.+ ..++||||||+.+ |...+..++..+|++|+|+|+.+ +.......+++.+...+.|+
T Consensus 142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pv 221 (550)
T 2qpt_A 142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKI 221 (550)
T ss_dssp TEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGE
T ss_pred cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCE
Confidence 223333333 4799999999986 66778888999999999999987 57778888888888888999
Q ss_pred EEEEeCCCcCCC-cHHHHHHHHH
Q 007325 211 ICFVNKMDRLGA-NFFRTRDMIV 232 (608)
Q Consensus 211 ivviNK~D~~~~-~~~~~~~~i~ 232 (608)
++|+||+|+... ++.+..+.+.
T Consensus 222 ilVlNK~Dl~~~~el~~~~~~l~ 244 (550)
T 2qpt_A 222 RVVLNKADMVETQQLMRVYGALM 244 (550)
T ss_dssp EEEEECGGGSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhh
Confidence 999999999753 3444444443
No 186
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.40 E-value=5.3e-12 Score=132.64 Aligned_cols=115 Identities=15% Similarity=0.251 Sum_probs=85.9
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 167 (608)
+....|+|||.||+|||||+|+|. +.....+ ...++|++.....+.+.+.++.|+||||..+
T Consensus 70 ~g~a~V~ivG~PNvGKSTL~n~Lt---~~~~~v~---------------~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~ 131 (376)
T 4a9a_A 70 TGVASVGFVGFPSVGKSTLLSKLT---GTESEAA---------------EYEFTTLVTVPGVIRYKGAKIQMLDLPGIID 131 (376)
T ss_dssp CSSEEEEEECCCCHHHHHHHHHHH---SBCCCGG---------------GTCSSCCCEEEEEEEETTEEEEEEECGGGCC
T ss_pred cCCCeEEEECCCCCCHHHHHHHHh---CCCCccc---------------CCCCceeeeeeEEEEeCCcEEEEEeCCCccC
Confidence 345789999999999999999995 3222211 1245688888899999999999999999865
Q ss_pred -------chHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHh-----cCCCEEEEEeCCCcCC
Q 007325 168 -------FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK-----YGVPRICFVNKMDRLG 221 (608)
Q Consensus 168 -------f~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~-----~~~p~ivviNK~D~~~ 221 (608)
....+...++.+|++++|+|+.+++.. ...+...+.. ...|.++++||+|+.+
T Consensus 132 ~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~~-~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~g 196 (376)
T 4a9a_A 132 GAKDGRGRGKQVIAVARTCNLLFIILDVNKPLHH-KQIIEKELEGVGIRLNKTPPDILIKKKEKGG 196 (376)
T ss_dssp C-----CHHHHHHHHHHHCSEEEEEEETTSHHHH-HHHHHHHHHHTTEEETCCCCCEEEEECSSSC
T ss_pred CchhhhHHHHHHHHHHHhcCccccccccCccHHH-HHHHHHHHHHhhHhhccCChhhhhhHhhhhh
Confidence 235577888999999999999975322 2223333433 3568899999999754
No 187
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.39 E-value=3.7e-12 Score=130.77 Aligned_cols=112 Identities=14% Similarity=0.158 Sum_probs=75.5
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCchH-
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL- 170 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~- 170 (608)
+|+++|..|+|||||++++.. +.... .. ..-+.|+......+. ...++++|||||+.+|..
T Consensus 1 KIvllGdsgvGKTSLl~~~~~--~~~~~-~~--------------~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~ 62 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFH--NMQPL-DT--------------LYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEP 62 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHS--CCCSG-GG--------------TTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCC
T ss_pred CEEEECCCCCCHHHHHHHHHc--CCCCC-cc--------------ceecCeeeeeeEEEc-cEEEEEEEECCCchhccch
Confidence 478999999999999998741 11100 00 001223333333332 347899999999999964
Q ss_pred --HHHHHHHhcCeEEEEEcCCCCCchhHHHHHHH----HH--hcCCCEEEEEeCCCcCCC
Q 007325 171 --EVERALRVLDGAICLFDSVAGVEPQSETVWRQ----AD--KYGVPRICFVNKMDRLGA 222 (608)
Q Consensus 171 --~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~----~~--~~~~p~ivviNK~D~~~~ 222 (608)
....+++.++++|+|+|+++. .......|.. +. ..++|+++|+||+|+...
T Consensus 63 ~l~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~ 121 (331)
T 3r7w_B 63 SYDSERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSE 121 (331)
T ss_dssp SHHHHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCS
T ss_pred hhhhhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCch
Confidence 467889999999999999986 3333333322 22 247899999999998754
No 188
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.39 E-value=7.1e-13 Score=150.10 Aligned_cols=135 Identities=16% Similarity=0.216 Sum_probs=85.1
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccce-------------------ee--ccCCccccchhhh----------
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIG-------------------EV--HEGTATMDWMEQE---------- 136 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g-------------------~~--~~g~~~~d~~~~e---------- 136 (608)
-..|.|+++|.+++|||||+|+|+...-.....+ .. ..+..+.|.....
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 3578999999999999999999973211000000 00 0011111211110
Q ss_pred --hhcceeEeecEEEEee-cCeeEEEEeCCCCCC-------------chHHHHHHH-HhcCeEEEEEcCCCCCchhHH-H
Q 007325 137 --QERGITITSAATTTYW-NKHRINIIDTPGHVD-------------FTLEVERAL-RVLDGAICLFDSVAGVEPQSE-T 198 (608)
Q Consensus 137 --~~~giTi~~~~~~~~~-~~~~i~liDTPG~~d-------------f~~~~~~~l-~~~D~~i~VvDa~~g~~~~t~-~ 198 (608)
...+++-......+.+ +...+.|+||||+.. +...+..++ ..+|++++|+|++.+...+.. .
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 0123333333333333 345799999999765 122333444 467999999999998877776 6
Q ss_pred HHHHHHhcCCCEEEEEeCCCcCCC
Q 007325 199 VWRQADKYGVPRICFVNKMDRLGA 222 (608)
Q Consensus 199 ~~~~~~~~~~p~ivviNK~D~~~~ 222 (608)
+++.+...+.|+++|+||+|+...
T Consensus 209 ll~~L~~~g~pvIlVlNKiDlv~~ 232 (772)
T 3zvr_A 209 IAKEVDPQGQRTIGVITKLDLMDE 232 (772)
T ss_dssp HHHHHCTTCSSEEEEEECTTSSCT
T ss_pred HHHHHHhcCCCEEEEEeCcccCCc
Confidence 788888889999999999998753
No 189
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.39 E-value=1.1e-12 Score=138.13 Aligned_cols=122 Identities=17% Similarity=0.204 Sum_probs=63.4
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCe--eEEEEeCCCCCC
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKH--RINIIDTPGHVD 167 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~--~i~liDTPG~~d 167 (608)
..+|+++|++|+|||||+++|+.. +. ...+. .+....+..+++++......+.+.+. .+++|||||+.+
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~-~~-~~~~~-------~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd 107 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLT-DL-YPERV-------IPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGD 107 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTC-CC-----------------------CEEEEEEEEC----CEEEEEEEEC------
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCC-CC-CCCCc-------ccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccc
Confidence 368999999999999999998521 11 00000 11111112233333333333344443 789999999954
Q ss_pred chH-------HHH-------HHHHhcC-------------eEEEEEcC-CCCCchhHHHHHHHHHhcCCCEEEEEeCCCc
Q 007325 168 FTL-------EVE-------RALRVLD-------------GAICLFDS-VAGVEPQSETVWRQADKYGVPRICFVNKMDR 219 (608)
Q Consensus 168 f~~-------~~~-------~~l~~~D-------------~~i~VvDa-~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~ 219 (608)
+.. .+. .+++.++ +++++||. .++.......+++.+ ..++|+|+|+||+|+
T Consensus 108 ~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l-~~~~piIlV~NK~Dl 186 (361)
T 2qag_A 108 AINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI-HNKVNIVPVIAKADT 186 (361)
T ss_dssp --------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT-CS-SCEEEEEECCSS
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh-ccCCCEEEEEECCCC
Confidence 322 222 4555443 47777776 566776666565554 367999999999998
Q ss_pred CC
Q 007325 220 LG 221 (608)
Q Consensus 220 ~~ 221 (608)
..
T Consensus 187 ~~ 188 (361)
T 2qag_A 187 LT 188 (361)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 190
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.38 E-value=1.3e-13 Score=146.68 Aligned_cols=82 Identities=22% Similarity=0.275 Sum_probs=45.7
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEe--------------------
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY-------------------- 151 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~-------------------- 151 (608)
+|+|+|.+|+|||||+|+|+... ..... ..++|+........
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~---~~~~~---------------~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~ 63 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD---VEIAN---------------YPFTTIEANVGVTYAITDHPCKELGCSPNPQNYE 63 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--------------------------------CCEEEEEEEEECSCSSSCCSCCCSSSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC---CcccC---------------CCCcccCCceEEEeeccCCchHHhhhhccccccc
Confidence 68999999999999999996322 11111 12223333322211
Q ss_pred -ec---CeeEEEEeCCCCCCchH-------HHHHHHHhcCeEEEEEcCCCC
Q 007325 152 -WN---KHRINIIDTPGHVDFTL-------EVERALRVLDGAICLFDSVAG 191 (608)
Q Consensus 152 -~~---~~~i~liDTPG~~df~~-------~~~~~l~~~D~~i~VvDa~~g 191 (608)
++ ...+.||||||+.++.. ....+++.+|++++|+|+.++
T Consensus 64 ~~~~~~~~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 64 YRNGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp EETTEEEEEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred ccCCcceEEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 12 35799999999875322 122346889999999999875
No 191
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.38 E-value=4.3e-12 Score=121.05 Aligned_cols=116 Identities=14% Similarity=0.087 Sum_probs=77.4
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCe--eEEEEeCCCC
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKH--RINIIDTPGH 165 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~--~i~liDTPG~ 165 (608)
+...+|+|+|.+|+|||||+++|+....... ....++.......+.+++. .+.+|||||+
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~------------------~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~ 88 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLE------------------SKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 88 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCS------------------CCCCCSEEEEEEEEEETTEEEEEEEEEECSC
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCC------------------CCCccceEEEEEEEEECCEEEEEEEEECCCC
Confidence 3457999999999999999999963211100 0011222333344555554 4567999999
Q ss_pred CCchHHHHHHHHhcCeEEEEEcCCCCCchhHHH-HHHHHHh---cCCCEEEEEeCCCcCC
Q 007325 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQADK---YGVPRICFVNKMDRLG 221 (608)
Q Consensus 166 ~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~-~~~~~~~---~~~p~ivviNK~D~~~ 221 (608)
.+|...+...++.+|++++|+|..+........ .+..+.. .+.|+++++||+|+..
T Consensus 89 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~ 148 (191)
T 1oix_A 89 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH 148 (191)
T ss_dssp CSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred cchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 988877778888899999999988643322222 2223322 4688999999999753
No 192
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.37 E-value=4.3e-12 Score=132.92 Aligned_cols=63 Identities=19% Similarity=0.088 Sum_probs=39.8
Q ss_pred ecCeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCC
Q 007325 152 WNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (608)
Q Consensus 152 ~~~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~ 221 (608)
..++.+.|+||||..+.. ......+|++++|+|+..+...+.. .. .....|.++|+||+|+..
T Consensus 164 ~~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~i---~~-~il~~~~ivVlNK~Dl~~ 226 (349)
T 2www_A 164 GAGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQGI---KR-GIIEMADLVAVTKSDGDL 226 (349)
T ss_dssp HTTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC----------------CCSCSEEEECCCSGGG
T ss_pred cCCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHHh---HH-HHHhcCCEEEEeeecCCC
Confidence 367899999999975432 2345788999999999876432211 11 124679999999999853
No 193
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.37 E-value=7.9e-13 Score=132.46 Aligned_cols=44 Identities=18% Similarity=0.165 Sum_probs=29.5
Q ss_pred hcCeEEEEEcCCCC--CchhHHH-HHHHH----HhcCCCEEEEEeCCCcCC
Q 007325 178 VLDGAICLFDSVAG--VEPQSET-VWRQA----DKYGVPRICFVNKMDRLG 221 (608)
Q Consensus 178 ~~D~~i~VvDa~~g--~~~~t~~-~~~~~----~~~~~p~ivviNK~D~~~ 221 (608)
.+|++|+|+|+++. ....... .+..+ ...++|+++|+||+|+..
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~ 212 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGV 212 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBC
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccc
Confidence 58999999999875 3332222 22222 235799999999999853
No 194
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.27 E-value=6.9e-12 Score=125.56 Aligned_cols=134 Identities=19% Similarity=0.200 Sum_probs=75.0
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhC--CcccceeeccCCccc---------cchhhhh--hcceeEeecEEE-----
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTG--RNYKIGEVHEGTATM---------DWMEQEQ--ERGITITSAATT----- 149 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g--~~~~~g~~~~g~~~~---------d~~~~e~--~~giTi~~~~~~----- 149 (608)
.+...++++|..|+|||||+++|..... ........+.+.... ++...+. .++.........
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRL 91 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHH
Confidence 3467899999999999999999975432 211122223332222 1111000 001000000000
Q ss_pred ----------E-ee-cCeeEEEEeCCCCCCchHH------HHHHHHhcCeEEEEEcCCCCCchhHHH-H----HHHHHhc
Q 007325 150 ----------T-YW-NKHRINIIDTPGHVDFTLE------VERALRVLDGAICLFDSVAGVEPQSET-V----WRQADKY 206 (608)
Q Consensus 150 ----------~-~~-~~~~i~liDTPG~~df~~~------~~~~l~~~D~~i~VvDa~~g~~~~t~~-~----~~~~~~~ 206 (608)
+ .+ .++.+.||||||..++... +..++.. +++|+|+|+.......... . +......
T Consensus 92 ~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~ 170 (262)
T 1yrb_A 92 MEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRL 170 (262)
T ss_dssp HTTHHHHHHHHHHHHHHCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhhcCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhccc
Confidence 0 00 2368999999999775322 2234444 7888899998665544322 1 1223446
Q ss_pred CCCEEEEEeCCCcCCC
Q 007325 207 GVPRICFVNKMDRLGA 222 (608)
Q Consensus 207 ~~p~ivviNK~D~~~~ 222 (608)
++|+++|+||+|+...
T Consensus 171 ~~p~~iv~NK~D~~~~ 186 (262)
T 1yrb_A 171 GATTIPALNKVDLLSE 186 (262)
T ss_dssp TSCEEEEECCGGGCCH
T ss_pred CCCeEEEEeccccccc
Confidence 8999999999998653
No 195
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.26 E-value=1.2e-12 Score=142.74 Aligned_cols=217 Identities=17% Similarity=0.178 Sum_probs=119.6
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhh---CCcccceeecc-CCccccchh-hhhhcceeEeecE-------------EE
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYT---GRNYKIGEVHE-GTATMDWME-QEQERGITITSAA-------------TT 149 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~---g~~~~~g~~~~-g~~~~d~~~-~e~~~giTi~~~~-------------~~ 149 (608)
.+.++|+|+|++|+|||||+++|.+.. |........+. .....++.. .....++.+.... ..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 456799999999999999999997543 22111111111 011111111 1122333322210 01
Q ss_pred EeecCeeEEEEeCCCCCC----chHHHHHHHH--hcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCE-EEEEeCCCcCCC
Q 007325 150 TYWNKHRINIIDTPGHVD----FTLEVERALR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLGA 222 (608)
Q Consensus 150 ~~~~~~~i~liDTPG~~d----f~~~~~~~l~--~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~-ivviNK~D~~~~ 222 (608)
+.+.++.++||||||... +..++....+ .+|.+++|+|+..+.. .....+.+... +|+ ++|+||+|...
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~a~~~~~~-~~i~gvVlNK~D~~~- 254 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQAKAFKDK-VDVASVIVTKLDGHA- 254 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHHHHHHHHH-HCCCCEEEECTTSCC-
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--HHHHHHHHHhh-cCceEEEEeCCcccc-
Confidence 123678999999999874 3333333322 6799999999998754 23333333332 785 89999999863
Q ss_pred cHHHHHHHHHHhhCCccEEEeccCCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHHHHHHHHHHHhh
Q 007325 223 NFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVEL 302 (608)
Q Consensus 223 ~~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~~~ 302 (608)
....+++ +.+.++.++. +++.++ ++. |+.......|-+...|. .....|+|.+++.
T Consensus 255 ~~g~~l~-~~~~~g~PI~--fig~ge--~~~---dl~~f~~~~~vsal~G~----------------Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 255 KGGGALS-AVAATKSPII--FIGTGE--HID---DFEPFKTQPFISKLLGM----------------GDIEGLIDKVNEL 310 (504)
T ss_dssp CCTHHHH-HHHHHCCCEE--EEECSS--STT---CEECCTHHHHHHCCCTT----------------TTTTTTHHHHTTT
T ss_pred chHHHHH-HHHHhCCCeE--Eecccc--chh---hhhccCcceeeehhcCC----------------CcHHHHHHHHHHH
Confidence 3333343 5566775432 233332 221 11111100010000010 0024567777765
Q ss_pred ----cHHHHHHHhcCCCCCHHHHHHHHHhhcccCc
Q 007325 303 ----DDEAMESYLEGNEPDEETIKKLIRKGTIAGS 333 (608)
Q Consensus 303 ----dd~l~e~~l~~~~~~~~el~~~l~~~~~~~~ 333 (608)
+++++++|++| +++.+++++.+++....+.
T Consensus 311 ~~~~~~~l~~k~~~g-~~~l~d~~~~l~~~~~~G~ 344 (504)
T 2j37_W 311 KLDDNEALIEKLKHG-QFTLRDMYEQFQNIMKMGP 344 (504)
T ss_dssp TTCCCTTTTTSCTTS-GGGGCCCHHHHHHCCCCCC
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCC
Confidence 67899999998 7888899999988776654
No 196
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.25 E-value=2.3e-11 Score=128.09 Aligned_cols=69 Identities=16% Similarity=0.214 Sum_probs=52.9
Q ss_pred CeeEEEEeCCCCCCc-------------hHHHHHHHHhcCeEEEEEcCCC-C-CchhHHHHHHHHHhcCCCEEEEEeCCC
Q 007325 154 KHRINIIDTPGHVDF-------------TLEVERALRVLDGAICLFDSVA-G-VEPQSETVWRQADKYGVPRICFVNKMD 218 (608)
Q Consensus 154 ~~~i~liDTPG~~df-------------~~~~~~~l~~~D~~i~VvDa~~-g-~~~~t~~~~~~~~~~~~p~ivviNK~D 218 (608)
...+.||||||+.++ ...+..+++.+|++|+|+|+.. . .......+++.+...+.|+++|+||+|
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~D 214 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKID 214 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGG
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCc
Confidence 567999999999887 6667788999999999998753 2 223334455555567889999999999
Q ss_pred cCCC
Q 007325 219 RLGA 222 (608)
Q Consensus 219 ~~~~ 222 (608)
+...
T Consensus 215 l~~~ 218 (360)
T 3t34_A 215 LMDK 218 (360)
T ss_dssp GCCT
T ss_pred cCCC
Confidence 8753
No 197
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.09 E-value=3.6e-10 Score=118.05 Aligned_cols=82 Identities=15% Similarity=0.080 Sum_probs=55.9
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC----------------
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK---------------- 154 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~---------------- 154 (608)
.+|+|+|.+|+|||||+|+|+... ..... .++.|+......+.+.+
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~---~~v~~---------------~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~ 64 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAG---IEAAN---------------YPFCTIEPNTGVVPMPDPRLDALAEIVKPERIL 64 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------------------------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC---CcccC---------------CCCceECceEEEEecCCcccceeeeeeccccee
Confidence 479999999999999999997322 11111 11223333333333332
Q ss_pred -eeEEEEeCCCCCCchH-------HHHHHHHhcCeEEEEEcCCC
Q 007325 155 -HRINIIDTPGHVDFTL-------EVERALRVLDGAICLFDSVA 190 (608)
Q Consensus 155 -~~i~liDTPG~~df~~-------~~~~~l~~~D~~i~VvDa~~ 190 (608)
..+.+|||||+.++.. .....++.+|++++|+|+++
T Consensus 65 ~~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 65 PTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp CCEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred eeEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 5799999999988643 34567899999999999985
No 198
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=99.09 E-value=1.3e-09 Score=117.03 Aligned_cols=219 Identities=13% Similarity=0.126 Sum_probs=118.2
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhh----CCcccceeeccCC-ccccchh-hhhhcceeEeecE-------------E
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYT----GRNYKIGEVHEGT-ATMDWME-QEQERGITITSAA-------------T 148 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~----g~~~~~g~~~~g~-~~~d~~~-~e~~~giTi~~~~-------------~ 148 (608)
...++|+++|+.|+||||++..|.... |........+... ...+... .....++.+-... .
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 346799999999999999999997443 2211111111111 0001000 1112233222210 0
Q ss_pred EEeecCeeEEEEeCCCCCCchHHHHHHH------HhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCE-EEEEeCCCcCC
Q 007325 149 TTYWNKHRINIIDTPGHVDFTLEVERAL------RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLG 221 (608)
Q Consensus 149 ~~~~~~~~i~liDTPG~~df~~~~~~~l------~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~-ivviNK~D~~~ 221 (608)
.+.+.++.++||||||...+...+...+ ...|.+++|+|+..+.. .....+... .++++ -+|+||+|...
T Consensus 178 ~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~--~~~~~~~f~-~~l~i~gvVlnK~D~~~ 254 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQD--AANTAKAFN-EALPLTGVVLTKVDGDA 254 (433)
T ss_dssp HHHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTT--HHHHHHHHH-HHSCCCCEEEECTTSSS
T ss_pred HHHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHH--HHHHHHHHh-ccCCCeEEEEecCCCCc
Confidence 1123578999999999877644444433 34688999999987632 222222222 23553 47899999743
Q ss_pred CcHHHHHHHHHHhhCCccEEEeccCCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHH--HHHHHHHH
Q 007325 222 ANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEY--RSQMIETI 299 (608)
Q Consensus 222 ~~~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--r~~l~e~~ 299 (608)
... .+.++...++..+.. +|.+.... |+ ..|. |..+.+..... ...|+|.+
T Consensus 255 -~~g-~~l~i~~~~~~Pi~~----iG~ge~v~---dl-----~~f~-------------p~~~a~~l~g~gD~~~Lie~a 307 (433)
T 2xxa_A 255 -RGG-AALSIRHITGKPIKF----LGVGEKTE---AL-----EPFH-------------PDRIASRILGMGDVLSLIEDI 307 (433)
T ss_dssp -CCT-HHHHHHHHHCCCEEE----EECSSSSS---CE-----EECC-------------HHHHHHHHHCCCTTHHHHHHH
T ss_pred -cHH-HHHHHHHHHCCCeEE----EecCCCch---hh-----hhcC-------------hHHHHHHHhCccchHHHHHHH
Confidence 332 333566666654321 12222211 11 1121 12222211111 22333333
Q ss_pred -----HhhcHHHHHHHhcCCCCCHHHHHHHHHhhcccCccee
Q 007325 300 -----VELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVP 336 (608)
Q Consensus 300 -----~~~dd~l~e~~l~~~~~~~~el~~~l~~~~~~~~~~P 336 (608)
.+.+++++++|++|++++.+++++.+++....+.+-|
T Consensus 308 ~~~~~~~~~~~l~~k~~~~~~f~~~d~~~ql~~~~~~g~~~~ 349 (433)
T 2xxa_A 308 ESKVDRAQAEKLASKLKKGDGFDLNDFLEQLRQMKNMGGMAS 349 (433)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHSCSSCHH
T ss_pred HHhhhhhhhHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchh
Confidence 2347889999999889999999999998877665544
No 199
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.05 E-value=3.7e-10 Score=117.62 Aligned_cols=125 Identities=18% Similarity=0.138 Sum_probs=67.8
Q ss_pred CCCceeEEEEcCCCCchHHHHHHHHHh----hCCcccceeeccCCcc-----------ccchhhhhhcceeEeecE----
Q 007325 87 LKDYRNIGIMAHIDAGKTTTTERVLFY----TGRNYKIGEVHEGTAT-----------MDWMEQEQERGITITSAA---- 147 (608)
Q Consensus 87 ~~~~~~i~ivG~~~~GKTTL~~~ll~~----~g~~~~~g~~~~g~~~-----------~d~~~~e~~~giTi~~~~---- 147 (608)
..+...++|+|++|||||||+++|+.. .|.+.-.+ .+..+.. +.+..+ ....-+....
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~-~d~~~~~~~~~~~~~~~~i~~v~q--~~~~~~~~~~~~~~ 128 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLA-VDPSSTRTGGSILGDKTRMARLAI--DRNAFIRPSPSSGT 128 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE-ECGGGGSSCCCSSCCGGGSTTGGG--CTTEEEECCCCCSS
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEE-EcCcccccccchHHHhhhheeecc--CcccccccCccccc
Confidence 345679999999999999999999632 23222111 1111110 000000 0000000000
Q ss_pred ------------EEEeecCeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEe
Q 007325 148 ------------TTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVN 215 (608)
Q Consensus 148 ------------~~~~~~~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviN 215 (608)
..+.+.+..+.||||||..+-.. .....+|.+++|+|+..+...+. +...+ ..++.++++|
T Consensus 129 l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~--i~~~i--~~~~~ivvlN 201 (337)
T 2qm8_A 129 LGGVAAKTRETMLLCEAAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQG--IKKGI--FELADMIAVN 201 (337)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC--------CCTTH--HHHCSEEEEE
T ss_pred ccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHH--HHHHH--hccccEEEEE
Confidence 00233688999999999876322 23468899999999865422110 00001 1347788999
Q ss_pred CCCcCC
Q 007325 216 KMDRLG 221 (608)
Q Consensus 216 K~D~~~ 221 (608)
|+|+..
T Consensus 202 K~Dl~~ 207 (337)
T 2qm8_A 202 KADDGD 207 (337)
T ss_dssp CCSTTC
T ss_pred chhccC
Confidence 999743
No 200
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.04 E-value=5.7e-10 Score=108.82 Aligned_cols=125 Identities=14% Similarity=0.191 Sum_probs=65.9
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceee--ccCCccccchhhhhh--cceeEeecEE-E------------E
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEV--HEGTATMDWMEQEQE--RGITITSAAT-T------------T 150 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~--~~g~~~~d~~~~e~~--~giTi~~~~~-~------------~ 150 (608)
.+.++|+++|++|+|||||+++|+...........+ +.+. ..|....+.. .-+.+..... . +
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~-~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l 114 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIA-KFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDL 114 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTT-HHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTS
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCC-CccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHH
Confidence 457899999999999999999998664322222211 1221 1222111111 1111110000 0 0
Q ss_pred eecCeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcC
Q 007325 151 YWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (608)
Q Consensus 151 ~~~~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~ 220 (608)
...+..+.++||+|........ -...+..+.|+|+..+...... .....+.|.++|+||+|+.
T Consensus 115 ~~~~~d~~~id~~g~i~~~~s~---~~~~~~~~~v~~~~~~~~~~~~----~~~~~~~~~iiv~NK~Dl~ 177 (226)
T 2hf9_A 115 NLDEIDLLFIENVGNLICPADF---DLGTHKRIVVISTTEGDDTIEK----HPGIMKTADLIVINKIDLA 177 (226)
T ss_dssp CGGGCSEEEEECCSCSSGGGGC---CCSCSEEEEEEEGGGCTTTTTT----CHHHHTTCSEEEEECGGGH
T ss_pred hcCCCCEEEEeCCCCccCcchh---hhccCcEEEEEecCcchhhHhh----hhhHhhcCCEEEEeccccC
Confidence 0123479999999953211110 1234667788887543322111 1122468999999999974
No 201
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.02 E-value=1e-08 Score=107.54 Aligned_cols=82 Identities=13% Similarity=0.098 Sum_probs=55.7
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEe-------------------
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY------------------- 151 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~------------------- 151 (608)
.+|+|+|.+|+|||||+|+|+.... ..... .+.|+..+.....
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~---~v~~~---------------p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~ 63 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANA---LAANY---------------PFATIDKNVGVVPLEDERLYALQRTFAKGERV 63 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHT---TCSSC---------------CGGGGSTTEEEEECCCHHHHHHHHHHCBTTBC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC---cccCC---------------CCceeccceeeEecChHHHHHHHHHhcccccc
Confidence 4799999999999999999974421 00000 0112222222221
Q ss_pred --ecCeeEEEEeCCCCCCc-------hHHHHHHHHhcCeEEEEEcCCC
Q 007325 152 --WNKHRINIIDTPGHVDF-------TLEVERALRVLDGAICLFDSVA 190 (608)
Q Consensus 152 --~~~~~i~liDTPG~~df-------~~~~~~~l~~~D~~i~VvDa~~ 190 (608)
+.+..+.+|||||+.++ .......++.+|++++|+|+.+
T Consensus 64 ~~~~~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 64 PPVVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCEECCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccCCceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 22467999999999775 3456778899999999999985
No 202
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.98 E-value=1.8e-09 Score=110.67 Aligned_cols=120 Identities=18% Similarity=0.247 Sum_probs=62.5
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeec-cCCccccchhhhhhcceeEeecEEEEee--cCeeEEEEeCCCC--
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVH-EGTATMDWMEQEQERGITITSAATTTYW--NKHRINIIDTPGH-- 165 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~-~g~~~~d~~~~e~~~giTi~~~~~~~~~--~~~~i~liDTPG~-- 165 (608)
.+|+++|++|+|||||+++|... +.....| +. .|... ..++........+.. ....+++|||||+
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~-~~~~~~g-i~~~g~~~--------~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~ 88 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLT-DLYPERV-ISGAAEKI--------ERTVQIEASTVEIEERGVKLRLTVVDTPGYGD 88 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC----------------------------------CEEEEC---CCEEEEEEEEC----
T ss_pred EEEEEECCCCCCHHHHHHHHhCC-CccCCCC-cccCCccc--------CCcceEeeEEEEecCCCcccCcchhhhhhhhh
Confidence 57899999999999999998521 0111111 10 00000 000111111111111 1357899999998
Q ss_pred -----CCchHHHH-------HHHHhcCe-------------EEEEEcCC-CCCchhHHHHHHHHHhcCCCEEEEEeCCCc
Q 007325 166 -----VDFTLEVE-------RALRVLDG-------------AICLFDSV-AGVEPQSETVWRQADKYGVPRICFVNKMDR 219 (608)
Q Consensus 166 -----~df~~~~~-------~~l~~~D~-------------~i~VvDa~-~g~~~~t~~~~~~~~~~~~p~ivviNK~D~ 219 (608)
..|..... ..++.+.+ ++++++.+ .++.....++++.+. .++|+++|+||.|+
T Consensus 89 ~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~-~~~~iilV~~K~Dl 167 (301)
T 2qnr_A 89 AINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADT 167 (301)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT-TTSCEEEEECCGGG
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH-hcCCEEEEEEeCCC
Confidence 33433332 44444432 56666654 458777766666553 46799999999998
Q ss_pred CC
Q 007325 220 LG 221 (608)
Q Consensus 220 ~~ 221 (608)
..
T Consensus 168 ~~ 169 (301)
T 2qnr_A 168 LT 169 (301)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 203
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.96 E-value=4e-09 Score=112.49 Aligned_cols=117 Identities=17% Similarity=0.198 Sum_probs=63.2
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCccc-ceeeccCCccccchhhhhhcceeEeecEEEEe--ec--CeeEEEEeCCCC
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYK-IGEVHEGTATMDWMEQEQERGITITSAATTTY--WN--KHRINIIDTPGH 165 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~-~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~--~~--~~~i~liDTPG~ 165 (608)
.+|+|+|++|+|||||+++|+ |.... .+. +....+.. . |+......+. .. ...+++|||||+
T Consensus 32 f~I~lvG~sGaGKSTLln~L~---g~~~~~~~~---~~~~~~~~-----~--t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~ 98 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLF---LTDLYSPEY---PGPSHRIK-----K--TVQVEQSKVLIKEGGVQLLLTIVDTPGF 98 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHT---TCCCCCCCC---CSCC------------CCEEEEEECC------CEEEEEEECC--
T ss_pred EEEEEECCCCCcHHHHHHHHh---CCCCCCCCC---CCcccCCc-----c--ceeeeeEEEEEecCCcccceeeeechhh
Confidence 468999999999999999995 32211 110 00000100 0 1111111111 11 236899999999
Q ss_pred CCchH------HH--------HHHH-----------Hh--cCeEEEEEcCC-CCCchhHHHHHHHHHhcCCCEEEEEeCC
Q 007325 166 VDFTL------EV--------ERAL-----------RV--LDGAICLFDSV-AGVEPQSETVWRQADKYGVPRICFVNKM 217 (608)
Q Consensus 166 ~df~~------~~--------~~~l-----------~~--~D~~i~VvDa~-~g~~~~t~~~~~~~~~~~~p~ivviNK~ 217 (608)
.++.. .+ ..++ +. ++++|++++++ +++......+++.+.. ++|+|+|+||+
T Consensus 99 ~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~-~v~iIlVinK~ 177 (418)
T 2qag_C 99 GDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKA 177 (418)
T ss_dssp ---------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT-TSEEEEEEEST
T ss_pred hhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc-cCcEEEEEEcc
Confidence 77531 11 1111 11 24466667666 6888887777777654 89999999999
Q ss_pred CcCC
Q 007325 218 DRLG 221 (608)
Q Consensus 218 D~~~ 221 (608)
|+..
T Consensus 178 Dll~ 181 (418)
T 2qag_C 178 DTLT 181 (418)
T ss_dssp TSSC
T ss_pred cCcc
Confidence 9864
No 204
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.94 E-value=9.4e-09 Score=109.83 Aligned_cols=217 Identities=18% Similarity=0.133 Sum_probs=104.4
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhh---CCcccceeeccCC-ccccchh-hhhhcceeEeec-------------EEEE
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYT---GRNYKIGEVHEGT-ATMDWME-QEQERGITITSA-------------ATTT 150 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~---g~~~~~g~~~~g~-~~~d~~~-~e~~~giTi~~~-------------~~~~ 150 (608)
..+.|+++|++|+||||++..|.... |........+... ...+... .....|+.+... ...+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 35789999999999999999996332 2111111101000 0000000 001112211110 0011
Q ss_pred eecCeeEEEEeCCCCCC------chHHHHHHHHh--cCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCC
Q 007325 151 YWNKHRINIIDTPGHVD------FTLEVERALRV--LDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (608)
Q Consensus 151 ~~~~~~i~liDTPG~~d------f~~~~~~~l~~--~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (608)
.+.++.+.||||||... +..++....+. .|.+++|+|+..|... ....+.....--+..+|+||+|.. +
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a--~~~a~~f~~~~~~~gVIlTKlD~~-a 252 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKA--YDLASRFHQASPIGSVIITKMDGT-A 252 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGG--HHHHHHHHHHCSSEEEEEECGGGC-S
T ss_pred HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHH--HHHHHHHhcccCCcEEEEeccccc-c
Confidence 12478899999999644 44444443333 3899999999986432 233344443435678999999976 4
Q ss_pred cHHHHHHHHHHhhCCccEEEeccCCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHH------HHHHHHHHHH
Q 007325 223 NFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQK------MAQEYRSQMI 296 (608)
Q Consensus 223 ~~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~------~~~~~r~~l~ 296 (608)
.....+.. ....+.++..+ +.+.+..+ + ....|+.+.+ ....+++++.
T Consensus 253 ~~G~als~-~~~~g~Pi~fi----g~Ge~v~d---L------------------~~f~p~~~~~~llg~gd~~~l~e~~~ 306 (433)
T 3kl4_A 253 KGGGALSA-VVATGATIKFI----GTGEKIDE---L------------------ETFNAKRFVSRILGMGDIESILEKVK 306 (433)
T ss_dssp CHHHHHHH-HHHHTCEEEEE----ECCSSSSC---E------------------EECCHHHHHHHHHCSSHHHHHHHHHH
T ss_pred cchHHHHH-HHHHCCCEEEE----ECCCChHh---C------------------ccCCHHHHHHHhcCCchHHHHHHHHH
Confidence 44444433 33455432211 11222110 0 1122344444 2334455555
Q ss_pred HHHHhhc-HHHHHHHhcCC-CCCHHHHHHHHHhhcccCcc
Q 007325 297 ETIVELD-DEAMESYLEGN-EPDEETIKKLIRKGTIAGSF 334 (608)
Q Consensus 297 e~~~~~d-d~l~e~~l~~~-~~~~~el~~~l~~~~~~~~~ 334 (608)
+.+.+.+ ++++++|..|+ +++-+++++.+++....|.+
T Consensus 307 ~~~~~~~~~~~~~k~~~g~~~f~~~d~~~q~~~~~kmg~~ 346 (433)
T 3kl4_A 307 GLEEYDKIQKKMEDVMEGKGKLTLRDVYAQIIALRKMGPL 346 (433)
T ss_dssp HC-------------------CCHHHHHHHHHHHHHCCSS
T ss_pred HhhhHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhccCH
Confidence 5444443 67999999997 89999999999887776643
No 205
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.77 E-value=6.5e-10 Score=117.20 Aligned_cols=132 Identities=11% Similarity=0.140 Sum_probs=82.8
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCch-
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT- 169 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~- 169 (608)
++|+++|.+|+|||||+|+|+........... ....+|+|.......+ +..+.++||||..+..
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~------------~~~~~gtT~~~~~~~~---~~~~~liDtPG~~~~~~ 227 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVIT------------TSYFPGTTLDMIEIPL---ESGATLYDTPGIINHHQ 227 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCE------------EEECTTSSCEEEEEEC---STTCEEEECCSCCCCSS
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCcccee------------ecCCCCeEEeeEEEEe---CCCeEEEeCCCcCcHHH
Confidence 58999999999999999999744110000000 0112345655444333 2348999999986532
Q ss_pred ------HHHHHHH---HhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCC-CcHHHHHHHHHHhhCC
Q 007325 170 ------LEVERAL---RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG-ANFFRTRDMIVTNLGA 237 (608)
Q Consensus 170 ------~~~~~~l---~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~-~~~~~~~~~i~~~l~~ 237 (608)
.+....+ ...|.+++++|+...........+..+...++|+++|+||+|... .+.+...+.+++.+|.
T Consensus 228 ~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~g~ 305 (369)
T 3ec1_A 228 MAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTVHRTKLEKADSLYANQLGE 305 (369)
T ss_dssp GGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEGGGHHHHHHHHBTT
T ss_pred HHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCcccccccHHHHHHHHHHhcCC
Confidence 2223333 567999999999532111111112333446789999999999865 3467778888888886
No 206
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.77 E-value=9.7e-09 Score=106.27 Aligned_cols=83 Identities=19% Similarity=0.164 Sum_probs=63.3
Q ss_pred cceeEeecEEEEeecCeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCC---------CC--chhHHHHHHHHHh--
Q 007325 139 RGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVA---------GV--EPQSETVWRQADK-- 205 (608)
Q Consensus 139 ~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~---------g~--~~~t~~~~~~~~~-- 205 (608)
+..|+......+.+++..+.+|||+|+..|...+..+++.++++|+|+|.++ .. .......|..+..
T Consensus 145 ~~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~ 224 (340)
T 4fid_A 145 RTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE 224 (340)
T ss_dssp CCCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG
T ss_pred ccceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh
Confidence 3446666677777889999999999999999999999999999999999982 11 1122334444432
Q ss_pred --cCCCEEEEEeCCCcCC
Q 007325 206 --YGVPRICFVNKMDRLG 221 (608)
Q Consensus 206 --~~~p~ivviNK~D~~~ 221 (608)
.++|+++|+||+|+..
T Consensus 225 ~~~~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 225 FLKGAVKLIFLNKMDLFE 242 (340)
T ss_dssp GGTTSEEEEEEECHHHHH
T ss_pred ccCCCeEEEEEECchhhh
Confidence 4789999999999753
No 207
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.77 E-value=1.2e-09 Score=114.99 Aligned_cols=133 Identities=9% Similarity=0.117 Sum_probs=80.8
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCc-ccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCch
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRN-YKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~-~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~ 169 (608)
++|+++|.+|+|||||+|+|+...... ..... ....+|+|.......+. ..+.++||||..+..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~------------~~~~~gtT~~~~~~~~~---~~~~liDtPG~~~~~ 225 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVIT------------TSHFPGTTLDLIDIPLD---EESSLYDTPGIINHH 225 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCE------------EECCC----CEEEEESS---SSCEEEECCCBCCTT
T ss_pred ceEEEecCCCCChhHHHHHHHhhhcccccccee------------cCCCCCeecceEEEEec---CCeEEEeCCCcCcHH
Confidence 589999999999999999998543211 10100 11224556555544432 238999999986532
Q ss_pred -------HHHHHH---HHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCC-CcHHHHHHHHHHhhCCc
Q 007325 170 -------LEVERA---LRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG-ANFFRTRDMIVTNLGAK 238 (608)
Q Consensus 170 -------~~~~~~---l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~-~~~~~~~~~i~~~l~~~ 238 (608)
.+.... ....+.+++++|+...........+..+...++|+++|+||+|... .+.+...+.+++.+|..
T Consensus 226 ~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~~~~~~~~~~~~~~~~g~~ 305 (368)
T 3h2y_A 226 QMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIHRTKLEKADELYKNHAGDL 305 (368)
T ss_dssp SGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEHHHHHHHHHHHBTTT
T ss_pred HHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCccccccccHHHHHHHHHHHhCCc
Confidence 222222 2455889999998532211111112333445789999999999875 34677788888888863
No 208
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.77 E-value=2.9e-08 Score=105.54 Aligned_cols=136 Identities=16% Similarity=0.171 Sum_probs=79.2
Q ss_pred CCCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--eeEEEEeCC
Q 007325 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTP 163 (608)
Q Consensus 86 ~~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTP 163 (608)
....+.+++|+|++|+|||||++.|+ |... .|...... ..+.+.......+...+ ..++++|+|
T Consensus 38 ~~Gei~~vaLvG~nGaGKSTLln~L~---G~~l------~g~~~~~~-----~~~~~~~~i~~v~Q~~~l~~~ltv~D~~ 103 (427)
T 2qag_B 38 SQGFCFNILCVGETGLGKSTLMDTLF---NTKF------EGEPATHT-----QPGVQLQSNTYDLQESNVRLKLTIVSTV 103 (427)
T ss_dssp C-CCEEEEEEECSTTSSSHHHHHHHH---TSCC-------------C-----CSSCEEEEEEEEEEC--CEEEEEEEEEE
T ss_pred cCCCeeEEEEECCCCCCHHHHHHHHh---Cccc------cCCcCCCC-----CccceEeeEEEEeecCccccccchhhhh
Confidence 34456779999999999999999996 3210 01000000 11222221111122222 268999999
Q ss_pred CCCCch--------------HHHHHHHHh-------------c--C-eEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEE
Q 007325 164 GHVDFT--------------LEVERALRV-------------L--D-GAICLFDSVAGVEPQSETVWRQADKYGVPRICF 213 (608)
Q Consensus 164 G~~df~--------------~~~~~~l~~-------------~--D-~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivv 213 (608)
|+.+.. ..+..++.. + | ++++|+|+.++....+.++++.+. .++|+|+|
T Consensus 104 ~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-~~~~vI~V 182 (427)
T 2qag_B 104 GFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-SKVNIIPI 182 (427)
T ss_dssp CCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-SCSEEEEE
T ss_pred hhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-hCCCEEEE
Confidence 987531 112222221 1 2 466788999999998888888776 78999999
Q ss_pred EeCCCcCCC-cHHHHHHHHHHhhC
Q 007325 214 VNKMDRLGA-NFFRTRDMIVTNLG 236 (608)
Q Consensus 214 iNK~D~~~~-~~~~~~~~i~~~l~ 236 (608)
+||+|.... +.....+.|++.+.
T Consensus 183 i~KtD~Lt~~E~~~l~~~I~~~L~ 206 (427)
T 2qag_B 183 IAKADAISKSELTKFKIKITSELV 206 (427)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHHB
T ss_pred EcchhccchHHHHHHHHHHHHHHH
Confidence 999998763 35556666766443
No 209
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.71 E-value=1.5e-08 Score=108.67 Aligned_cols=222 Identities=17% Similarity=0.166 Sum_probs=108.8
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhC---CcccceeeccC-Cccccchhh-hhhcceeEeecE--------E---EE-e
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTG---RNYKIGEVHEG-TATMDWMEQ-EQERGITITSAA--------T---TT-Y 151 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g---~~~~~g~~~~g-~~~~d~~~~-e~~~giTi~~~~--------~---~~-~ 151 (608)
..++|+++|.+|+||||++++|..... ........+.. ....+.... ....|+.+.... . .+ .
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~ 177 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEK 177 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHH
Confidence 346899999999999999999974321 11111111100 000111100 001111111000 0 00 1
Q ss_pred ecCeeEEEEeCCCCCCchHHHHHHH------HhcCeEEEEEcCCCCCchhHHHHHHHHHhcCC-C-EEEEEeCCCcCCCc
Q 007325 152 WNKHRINIIDTPGHVDFTLEVERAL------RVLDGAICLFDSVAGVEPQSETVWRQADKYGV-P-RICFVNKMDRLGAN 223 (608)
Q Consensus 152 ~~~~~i~liDTPG~~df~~~~~~~l------~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~-p-~ivviNK~D~~~~~ 223 (608)
+.++.+.||||||...........+ ..+|.+++|+|+..+.. .....+.. ...+ | ..+|+||+|... .
T Consensus 178 ~~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~--~~~~~~~~-~~~~~~i~gvVlnK~D~~~-~ 253 (432)
T 2v3c_C 178 FKKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ--AGIQAKAF-KEAVGEIGSIIVTKLDGSA-K 253 (432)
T ss_dssp TSSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG--HHHHHHHH-HTTSCSCEEEEEECSSSCS-T
T ss_pred hhCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH--HHHHHHHH-hhcccCCeEEEEeCCCCcc-c
Confidence 2578899999999877543333332 14689999999988742 22222222 2346 7 788999999753 3
Q ss_pred HHHHHHHHHHhhCCccEEEeccCCCCCCeeeEEecccceeEEecCcCCCceeeeecCcHhHHHHHHHH--HHHHHHHH--
Q 007325 224 FFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEY--RSQMIETI-- 299 (608)
Q Consensus 224 ~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--r~~l~e~~-- 299 (608)
....+ ++...++.... + ++.+..+. |+.. |. |..+....... ...|+|.+
T Consensus 254 ~g~~l-~~~~~~~~pi~--~--ig~Ge~~~---dl~~-----f~-------------~~~~~s~l~g~gdi~~L~e~~~~ 307 (432)
T 2v3c_C 254 GGGAL-SAVAETKAPIK--F--IGIGEGID---DLEP-----FD-------------PKKFISRLLGMGDLESLLEKAED 307 (432)
T ss_dssp THHHH-HHHHHSSCCEE--E--ECCSSSSS---SCCB-----CC-------------HHHHHHHHTCSSCSSTTSSTTTS
T ss_pred hHHHH-HHHHHHCCCEE--E--eecCcccc---cccc-----CC-------------HHHHHHHHcCCCcHHHHHHHHHH
Confidence 33344 36667776442 2 23333321 1111 10 00000000000 01222322
Q ss_pred --HhhcHHHHHHHhcCCCCCHHHHHHHHHhhcccC---cceeeeeec
Q 007325 300 --VELDDEAMESYLEGNEPDEETIKKLIRKGTIAG---SFVPVLCGS 341 (608)
Q Consensus 300 --~~~dd~l~e~~l~~~~~~~~el~~~l~~~~~~~---~~~Pv~~~S 341 (608)
.+.+++++++|+.+ +++.+++...+++....| .+++.++++
T Consensus 308 ~~~e~~~~~~~k~~~~-~~~~~~~~~~l~~~~~~g~~~~~~~~~P~~ 353 (432)
T 2v3c_C 308 MVDEKTEESIDAIMRG-KFTLNELMTQLEAIENMGSMKKILSMIPGF 353 (432)
T ss_dssp CSCSSSSTTHHHHCCS-CCHHHHHHHHTTTTSCC-------------
T ss_pred HHHhhhHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHcccc
Confidence 22335688999987 788999999988877766 444555554
No 210
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.67 E-value=2e-08 Score=103.52 Aligned_cols=82 Identities=16% Similarity=0.106 Sum_probs=61.6
Q ss_pred cceeEeecEEEEeecCeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCC-------CCCc----hhHHHHHHHHHh--
Q 007325 139 RGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSV-------AGVE----PQSETVWRQADK-- 205 (608)
Q Consensus 139 ~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~-------~g~~----~~t~~~~~~~~~-- 205 (608)
+..|+......+..++..+.+|||.|+..|...+..+++.++++|+|+|.+ +.-. ......|..+..
T Consensus 151 r~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~ 230 (327)
T 3ohm_A 151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 230 (327)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSG
T ss_pred cCceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhh
Confidence 344555666777788999999999999999999999999999999999765 2111 122334444433
Q ss_pred --cCCCEEEEEeCCCcC
Q 007325 206 --YGVPRICFVNKMDRL 220 (608)
Q Consensus 206 --~~~p~ivviNK~D~~ 220 (608)
.++|+++|+||+|+.
T Consensus 231 ~~~~~~iiL~~NK~DL~ 247 (327)
T 3ohm_A 231 WFQNSSVILFLNKKDLL 247 (327)
T ss_dssp GGTTCEEEEEEECHHHH
T ss_pred ccCCceEEEEEECchhh
Confidence 478999999999975
No 211
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.66 E-value=2.8e-07 Score=97.97 Aligned_cols=112 Identities=12% Similarity=0.053 Sum_probs=66.8
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcc-cceeeccCCccccchhhhhhcceeEeecEEEEeecC-eeEEEEeCCCCCCc
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNY-KIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK-HRINIIDTPGHVDF 168 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~-~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~-~~i~liDTPG~~df 168 (608)
..++|+|++|+|||||+|.|+ |... ..|.+ ..+..+.. ..++ .+.... ..++++|+||+..-
T Consensus 70 ~~valvG~nGaGKSTLln~L~---Gl~~p~~GsI-----~~~g~~~t-~~~~-------v~q~~~~~~ltv~D~~g~~~~ 133 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLR---GIGNEEEGAA-----KTGVVEVT-MERH-------PYKHPNIPNVVFWDLPGIGST 133 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHH---TCCTTSTTSC-----CCCC-----CCCE-------EEECSSCTTEEEEECCCGGGS
T ss_pred eEEEEECCCCCcHHHHHHHHh---CCCCccCceE-----EECCeecc-eeEE-------eccccccCCeeehHhhcccch
Confidence 489999999999999999996 3221 12222 11111100 0111 111111 36899999997431
Q ss_pred ---hHHHHHHH--HhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcC
Q 007325 169 ---TLEVERAL--RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (608)
Q Consensus 169 ---~~~~~~~l--~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~ 220 (608)
..+....+ ...|..++ +++.. .+.+...+.+.+...++|+++|+||.|+.
T Consensus 134 ~~~~~~~L~~~~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdll 188 (413)
T 1tq4_A 134 NFPPDTYLEKMKFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDSD 188 (413)
T ss_dssp SCCHHHHHHHTTGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHHH
T ss_pred HHHHHHHHHHcCCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCccc
Confidence 22222222 22344444 67655 46777778888888899999999999864
No 212
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.64 E-value=3.8e-08 Score=103.70 Aligned_cols=84 Identities=18% Similarity=0.134 Sum_probs=51.0
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeec---------------
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--------------- 153 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~--------------- 153 (608)
....|+|+|.+|+|||||+|+|. +...... ..+++|+......+.+.
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Lt---g~~~~~~---------------~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~ 82 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLT---NSQASAE---------------NFPFCTIDPNESRVPVPDERFDFLCQYHKPAS 82 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHH---C----------------------------CCSEEEEECCCHHHHHHHHHHCCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHH---CCCcccc---------------CCCccccCceeEEEEECCccceeeccccCccc
Confidence 34689999999999999999996 2111111 11234555555544443
Q ss_pred --CeeEEEEeCCCCCCchH-------HHHHHHHhcCeEEEEEcCCC
Q 007325 154 --KHRINIIDTPGHVDFTL-------EVERALRVLDGAICLFDSVA 190 (608)
Q Consensus 154 --~~~i~liDTPG~~df~~-------~~~~~l~~~D~~i~VvDa~~ 190 (608)
...+.+|||||+..+.. .+...++.+|++++|+|+.+
T Consensus 83 ~~~~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 83 KIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp EECCEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred ccccccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 23599999999987654 56778899999999999974
No 213
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.62 E-value=2.6e-06 Score=90.98 Aligned_cols=146 Identities=15% Similarity=0.039 Sum_probs=75.9
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhh---CCcccceeeccCCc-cccch-hhhhhcceeEeecEE-------------EE
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYT---GRNYKIGEVHEGTA-TMDWM-EQEQERGITITSAAT-------------TT 150 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~---g~~~~~g~~~~g~~-~~d~~-~~e~~~giTi~~~~~-------------~~ 150 (608)
+.+.|+++|.+|+||||++..|.... |........+.... ..+.. ......|+.+..... .+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999997432 21111111110000 00000 001112222211100 01
Q ss_pred eecCeeEEEEeCCCCCCchHHHHH------HHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCCcH
Q 007325 151 YWNKHRINIIDTPGHVDFTLEVER------ALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANF 224 (608)
Q Consensus 151 ~~~~~~i~liDTPG~~df~~~~~~------~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~~ 224 (608)
...++.+.||||||.......... .....|.+++|+|+..|... ....+.....--+..+|+||+|.... .
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a--~~~a~~f~~~~~i~gVIlTKlD~~~~-g 255 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA--YNQALAFKEATPIGSIIVTKLDGSAK-G 255 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH--HHHHHHHHHSCTTEEEEEECCSSCSS-H
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhH--HHHHHHHHhhCCCeEEEEECCCCccc-c
Confidence 114589999999996553332222 22345899999999986432 33334444333455689999997532 2
Q ss_pred HHHHHHHHHhhCCc
Q 007325 225 FRTRDMIVTNLGAK 238 (608)
Q Consensus 225 ~~~~~~i~~~l~~~ 238 (608)
...-++....+.+
T Consensus 256 -G~~ls~~~~~g~P 268 (443)
T 3dm5_A 256 -GGALSAVAATGAP 268 (443)
T ss_dssp -HHHHHHHHTTCCC
T ss_pred -cHHHHHHHHHCCC
Confidence 2233444455553
No 214
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.62 E-value=2.1e-07 Score=93.59 Aligned_cols=136 Identities=16% Similarity=0.179 Sum_probs=76.9
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeec-cCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCch
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVH-EGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~-~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~ 169 (608)
.+++|+|++|+|||||++.|+..... ..|.+. .|... ......+++..-..... -...++++|+||+.+..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~--~~G~i~~~g~~i---~~~~~~~~i~~v~q~~~---~~~~ltv~d~~~~g~~~ 74 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVS--RKASSWNREEKI---PKTVEIKAIGHVIEEGG---VKMKLTVIDTPGFGDQI 74 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC--------------C---CCCCSCCEEEESCC-------CCEEEEECCCC--CCS
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCC--CCCccccCCccc---CcceeeeeeEEEeecCC---CcCCceEEechhhhhhc
Confidence 48999999999999999999733221 112211 01000 00011112211111100 12368999999975410
Q ss_pred ------HH--------HHHHHH--------------hcCeEEEEEcCC-CCCchhHHHHHHHHHhcCCCEEEEEeCCCcC
Q 007325 170 ------LE--------VERALR--------------VLDGAICLFDSV-AGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (608)
Q Consensus 170 ------~~--------~~~~l~--------------~~D~~i~VvDa~-~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~ 220 (608)
.. ....+. .+.++++++|.. ++..+.+.++++.+... +++++|+||+|..
T Consensus 75 ~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~D~l 153 (270)
T 3sop_A 75 NNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKADTM 153 (270)
T ss_dssp BCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTGGGS
T ss_pred ccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEeccccC
Confidence 01 111111 137788889865 89999999998888877 9999999999987
Q ss_pred CCc-HHHHHHHHHHhh
Q 007325 221 GAN-FFRTRDMIVTNL 235 (608)
Q Consensus 221 ~~~-~~~~~~~i~~~l 235 (608)
..+ .....+.+++.+
T Consensus 154 t~~e~~~~k~~i~~~l 169 (270)
T 3sop_A 154 TLEEKSEFKQRVRKEL 169 (270)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 643 444455555444
No 215
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.58 E-value=5.1e-08 Score=101.82 Aligned_cols=82 Identities=15% Similarity=0.067 Sum_probs=63.3
Q ss_pred cceeEeecEEEEeecCeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCC-----------chhHHHHHHHHHh--
Q 007325 139 RGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-----------EPQSETVWRQADK-- 205 (608)
Q Consensus 139 ~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~-----------~~~t~~~~~~~~~-- 205 (608)
+..|+......+.+++..+.+|||+|+.+|...+..+++.++++|+|+|.++.- .......+..+..
T Consensus 177 ~~~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~ 256 (353)
T 1cip_A 177 RVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 256 (353)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCG
T ss_pred cCceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCc
Confidence 344555566677778999999999999999999999999999999999999732 1222334444433
Q ss_pred --cCCCEEEEEeCCCcC
Q 007325 206 --YGVPRICFVNKMDRL 220 (608)
Q Consensus 206 --~~~p~ivviNK~D~~ 220 (608)
.++|+++|+||+|+.
T Consensus 257 ~~~~~piiLv~NK~DL~ 273 (353)
T 1cip_A 257 WFTDTSIILFLNKKDLF 273 (353)
T ss_dssp GGTTSEEEEEEECHHHH
T ss_pred cccCCcEEEEEECcCch
Confidence 478999999999974
No 216
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=98.56 E-value=1.5e-07 Score=90.62 Aligned_cols=85 Identities=13% Similarity=0.282 Sum_probs=70.3
Q ss_pred CCCCeEEEEEEeeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCeeecCCEEEE--cCCC-
Q 007325 386 DDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK- 462 (608)
Q Consensus 386 ~~~p~~~~V~K~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~- 462 (608)
.++||.+.|..++. +.|++..|||.+|++++||.|...+.+...+|++|... .+++++|.|||++++ .|++
T Consensus 3 ~~~p~rl~v~~v~~--g~G~v~~G~v~~G~i~~Gd~v~i~P~~~~~~V~~I~~~----~~~~~~A~aGd~V~l~L~gi~~ 76 (204)
T 3e1y_E 3 LGSPIRLPIVDKYK--DMGTVVLGKLESGSICKGQQLVMMPNKHNVEVLGILSD----DVETDTVAPGENLKIRLKGIEE 76 (204)
T ss_dssp ----CBEEEEEEEE--SSSEEEEEECCBSCEESSCCEEETTTTEEEEEEEECSS----SSCBSEECTTSEEEEEEEESSS
T ss_pred CCCCEEEEEEEEEc--CCCEEEEEEEecCEEECCCEEEECCCCCEEEEEEEEEC----CEEeEEECCCCEEEEEEcCCCH
Confidence 36899999988876 57999999999999999999999998888889888643 367999999999999 7664
Q ss_pred -cccccceeccCCCC
Q 007325 463 -DTITGETLCDADHP 476 (608)
Q Consensus 463 -~~~~GdtL~~~~~~ 476 (608)
++..||+||+++++
T Consensus 77 ~di~rG~vl~~~~~~ 91 (204)
T 3e1y_E 77 EEILPGFILCDPNNL 91 (204)
T ss_dssp SCCCTTCEEBCSSSC
T ss_pred HHCccceEEECCCCC
Confidence 58899999987654
No 217
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.44 E-value=2.3e-07 Score=97.12 Aligned_cols=80 Identities=16% Similarity=0.080 Sum_probs=54.6
Q ss_pred eeEeecEEEEeecCeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCC-----------chhHHHHHHHHHh----
Q 007325 141 ITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-----------EPQSETVWRQADK---- 205 (608)
Q Consensus 141 iTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~-----------~~~t~~~~~~~~~---- 205 (608)
.|+......+.+++..+.+|||+|+..|...+..+++.++++|+|+|.++-- .......|..+..
T Consensus 187 ~T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~ 266 (362)
T 1zcb_A 187 PTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVF 266 (362)
T ss_dssp CCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred CccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhh
Confidence 3444555667778899999999999999999999999999999999999721 1222334444433
Q ss_pred cCCCEEEEEeCCCcC
Q 007325 206 YGVPRICFVNKMDRL 220 (608)
Q Consensus 206 ~~~p~ivviNK~D~~ 220 (608)
.++|+|+|+||+|+.
T Consensus 267 ~~~piILv~NK~DL~ 281 (362)
T 1zcb_A 267 SNVSIILFLNKTDLL 281 (362)
T ss_dssp TTSEEEEEEECHHHH
T ss_pred CCCCEEEEEEChhhh
Confidence 468999999999974
No 218
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.35 E-value=7.7e-07 Score=93.94 Aligned_cols=85 Identities=13% Similarity=0.093 Sum_probs=60.6
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecC--------------
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK-------------- 154 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~-------------- 154 (608)
+...++|+|++|+|||||+|+|+..... ... ..+++|+......+.+.+
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a--~~~---------------~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~ 81 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLG--NPA---------------NYPYATIDPEEAKVAVPDERFDWLCEAYKPKS 81 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTT--STT---------------CCSSCCCCTTEEEEEECCHHHHHHHHHHCCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcc--ccc---------------CCCceeecceeeeeeeCCcchhhhhhhccccc
Confidence 3468999999999999999999632110 111 113345555555555543
Q ss_pred ---eeEEEEeCCCCCC-------chHHHHHHHHhcCeEEEEEcCCC
Q 007325 155 ---HRINIIDTPGHVD-------FTLEVERALRVLDGAICLFDSVA 190 (608)
Q Consensus 155 ---~~i~liDTPG~~d-------f~~~~~~~l~~~D~~i~VvDa~~ 190 (608)
..+.++||||... +...+...++.+|.+++|+|+.+
T Consensus 82 ~v~~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 82 RVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp EECEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred ccCcceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4689999999654 45577788899999999999975
No 219
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=98.30 E-value=4.8e-06 Score=79.36 Aligned_cols=143 Identities=15% Similarity=0.149 Sum_probs=85.2
Q ss_pred eeEEEE-cCCCCchHHHHHHHHHh---hCCcccceeeccCCccccchhhhhhcceeEeecEE-EE------eecCeeEEE
Q 007325 91 RNIGIM-AHIDAGKTTTTERVLFY---TGRNYKIGEVHEGTATMDWMEQEQERGITITSAAT-TT------YWNKHRINI 159 (608)
Q Consensus 91 ~~i~iv-G~~~~GKTTL~~~ll~~---~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~-~~------~~~~~~i~l 159 (608)
+.|++. +..|+||||++-.|... .|...-.-..+......++.... ..+..+-.... .+ -...+.+.|
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~l~~~yD~vi 80 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWSKAG-KAAFDVFTAASEKDVYGIRKDLADYDFAI 80 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHTTS-CCSSEEEECCSHHHHHTHHHHTTTSSEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhcC-CCCCcEEecCcHHHHHHHHHhcCCCCEEE
Confidence 567787 67889999999988533 22211112222222222222211 11111100000 00 013588999
Q ss_pred EeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhc-----CCCEEEEEeCCCcCCCcHHHHHHHHHHh
Q 007325 160 IDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY-----GVPRICFVNKMDRLGANFFRTRDMIVTN 234 (608)
Q Consensus 160 iDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~-----~~p~ivviNK~D~~~~~~~~~~~~i~~~ 234 (608)
||||+.. ......++..+|.+|++++....- ..+...++.+... ++++.+|+|++|.......+..+.+++
T Consensus 81 iD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~~~~~~~~~l~~- 156 (206)
T 4dzz_A 81 VDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMATMLNVLKESIKD- 156 (206)
T ss_dssp EECCSSS--SHHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEEEEHHHHHHHHH-
T ss_pred EECCCCC--CHHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCchHHHHHHHHHHH-
Confidence 9999977 456778889999999999998766 7777777777654 467789999999644333344444443
Q ss_pred hCCc
Q 007325 235 LGAK 238 (608)
Q Consensus 235 l~~~ 238 (608)
++..
T Consensus 157 ~~~~ 160 (206)
T 4dzz_A 157 TGVK 160 (206)
T ss_dssp HTCC
T ss_pred cCCc
Confidence 6644
No 220
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.28 E-value=6e-07 Score=91.78 Aligned_cols=64 Identities=16% Similarity=0.077 Sum_probs=50.7
Q ss_pred eEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCC-chhH-HHHHHHHHhcCCCEEEEEeCCCcCC
Q 007325 156 RINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-EPQS-ETVWRQADKYGVPRICFVNKMDRLG 221 (608)
Q Consensus 156 ~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~-~~~t-~~~~~~~~~~~~p~ivviNK~D~~~ 221 (608)
.+.+||| +.+|......+++.+|++|+|+|+++.. .... ...+..+...++|+++|+||+|+..
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~~ 129 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYD 129 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCC
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcCC
Confidence 7899999 8888877778899999999999999754 2332 2333445567899999999999864
No 221
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.27 E-value=3.4e-06 Score=85.95 Aligned_cols=145 Identities=17% Similarity=0.145 Sum_probs=79.1
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhh---CCcccceeeccCC-ccccch-hhhhhcceeEeec-------------EEEEe
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYT---GRNYKIGEVHEGT-ATMDWM-EQEQERGITITSA-------------ATTTY 151 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~---g~~~~~g~~~~g~-~~~d~~-~~e~~~giTi~~~-------------~~~~~ 151 (608)
...|+++|.+|+||||++..|.... |........+... ...+.. ......|+.+-.. ...+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 5689999999999999999996332 2111111111100 000000 0011123322111 00112
Q ss_pred ecCeeEEEEeCCCCCC--chHHHH------HHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCC-EEEEEeCCCcCCC
Q 007325 152 WNKHRINIIDTPGHVD--FTLEVE------RALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGA 222 (608)
Q Consensus 152 ~~~~~i~liDTPG~~d--f~~~~~------~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p-~ivviNK~D~~~~ 222 (608)
+.++.+.||||||... ....+. .....+|.+++|+|+..+ .......+.... .+| ..+|+||+|...
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVlnk~D~~~- 253 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIIITKMDGTA- 253 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEEECGGGCT-
T ss_pred hCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEEeCCCCCc-
Confidence 2678999999999877 433332 244567999999999865 223333333333 577 678899999753
Q ss_pred cHHHHHHHHHHhhCCcc
Q 007325 223 NFFRTRDMIVTNLGAKP 239 (608)
Q Consensus 223 ~~~~~~~~i~~~l~~~~ 239 (608)
... .+.++...++..+
T Consensus 254 ~~g-~~~~~~~~~~~pi 269 (297)
T 1j8m_F 254 KGG-GALSAVAATGATI 269 (297)
T ss_dssp THH-HHHHHHHTTTCCE
T ss_pred chH-HHHHHHHHHCcCE
Confidence 333 3344666666543
No 222
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.22 E-value=1.6e-06 Score=91.68 Aligned_cols=79 Identities=18% Similarity=0.159 Sum_probs=60.4
Q ss_pred eEeecEEEEeecCeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCC----------CCc-hhHHHHHHHHHh----c
Q 007325 142 TITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVA----------GVE-PQSETVWRQADK----Y 206 (608)
Q Consensus 142 Ti~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~----------g~~-~~t~~~~~~~~~----~ 206 (608)
|+......+.+++..+.+|||+|+..|...+..+++.++++|+|+|.++ .-. ......+..+.. .
T Consensus 204 TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~ 283 (402)
T 1azs_C 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR 283 (402)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS
T ss_pred eeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC
Confidence 4444555677788999999999999999999999999999999999986 211 122333444433 3
Q ss_pred CCCEEEEEeCCCcC
Q 007325 207 GVPRICFVNKMDRL 220 (608)
Q Consensus 207 ~~p~ivviNK~D~~ 220 (608)
++|+++|+||+|+.
T Consensus 284 ~~piiLvgNK~DL~ 297 (402)
T 1azs_C 284 TISVILFLNKQDLL 297 (402)
T ss_dssp SCCEEEEEECHHHH
T ss_pred CCeEEEEEEChhhh
Confidence 68999999999974
No 223
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.18 E-value=1.4e-06 Score=96.44 Aligned_cols=103 Identities=16% Similarity=0.096 Sum_probs=60.3
Q ss_pred CCCceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEE---eecCeeEEEEeCC
Q 007325 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTT---YWNKHRINIIDTP 163 (608)
Q Consensus 87 ~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~---~~~~~~i~liDTP 163 (608)
......|+|+|.+|+|||||+|+|+.....+ .+ +.+. ++.|........ ...+..+.|+|||
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~----~~--~~tt---------~~~T~gi~~~~~~~~~~~~~~i~LiDTp 99 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGF----SL--GSTV---------QSHTKGIWMWCVPHPKKPGHILVLLDTE 99 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCS----CC--CCSS---------SCCCCSEEEEEEECSSSTTCEEEEEEEC
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCcc----cc--CCCC---------CCceeEEEEeecccccCCCceEEEecCC
Confidence 3456889999999999999999996221111 11 1111 111211111111 1246789999999
Q ss_pred CCCCchH------HHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHH
Q 007325 164 GHVDFTL------EVERALRVLDGAICLFDSVAGVEPQSETVWRQAD 204 (608)
Q Consensus 164 G~~df~~------~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~ 204 (608)
|..+... ...-++...-..++|+|+..++..+....+..+.
T Consensus 100 Gi~~~~~~~~~~~~~~fala~llss~lv~n~~~~i~~~dl~~l~~v~ 146 (592)
T 1f5n_A 100 GLGDVEKGDNQNDSWIFALAVLLSSTFVYNSIGTINQQAMDQLYYVT 146 (592)
T ss_dssp CBCCGGGCCCTTHHHHHHHHHHHCSEEEEEEESCSSHHHHHTTHHHH
T ss_pred CcCcccccchhHHHHHHHHHHHhcCeEEEECCCCccHHHHHHHHHHH
Confidence 9876322 1121233322337888988888888877766544
No 224
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.14 E-value=8e-06 Score=77.80 Aligned_cols=67 Identities=12% Similarity=0.165 Sum_probs=37.2
Q ss_pred eEEEEeCC------CCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHH----HHHHh----cCCCEEEEEeCC-CcC
Q 007325 156 RINIIDTP------GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW----RQADK----YGVPRICFVNKM-DRL 220 (608)
Q Consensus 156 ~i~liDTP------G~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~----~~~~~----~~~p~ivviNK~-D~~ 220 (608)
++..-.+| |+..+...+..++..+|++|+|||+++.-.....+-+ ..+.. .++|++|+.||. |++
T Consensus 97 k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp 176 (227)
T 3l82_B 97 KMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV 176 (227)
T ss_dssp --------------------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS
T ss_pred hcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc
Confidence 34455566 6677788899999999999999999965322233322 22211 478999999995 676
Q ss_pred CC
Q 007325 221 GA 222 (608)
Q Consensus 221 ~~ 222 (608)
++
T Consensus 177 ~A 178 (227)
T 3l82_B 177 KR 178 (227)
T ss_dssp CB
T ss_pred CC
Confidence 54
No 225
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.05 E-value=4.3e-06 Score=87.18 Aligned_cols=67 Identities=12% Similarity=0.084 Sum_probs=50.3
Q ss_pred CeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCC---------CCc--hhHHHHHHHHHh----cCCCEEEEEeCCC
Q 007325 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVA---------GVE--PQSETVWRQADK----YGVPRICFVNKMD 218 (608)
Q Consensus 154 ~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~---------g~~--~~t~~~~~~~~~----~~~p~ivviNK~D 218 (608)
...+.+|||+|+.+|...+..+++.+|++|+|+|.++ ... ......|..+.. .++|+++|+||+|
T Consensus 182 ~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~D 261 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFD 261 (354)
T ss_dssp --EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHH
T ss_pred ceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcc
Confidence 4789999999999999999999999999999999871 111 122233444432 4689999999999
Q ss_pred cC
Q 007325 219 RL 220 (608)
Q Consensus 219 ~~ 220 (608)
+.
T Consensus 262 L~ 263 (354)
T 2xtz_A 262 IF 263 (354)
T ss_dssp HH
T ss_pred hh
Confidence 74
No 226
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.04 E-value=4.9e-06 Score=84.09 Aligned_cols=61 Identities=26% Similarity=0.329 Sum_probs=43.7
Q ss_pred EEeCCCCC-CchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCC
Q 007325 159 IIDTPGHV-DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (608)
Q Consensus 159 liDTPG~~-df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~ 221 (608)
+-+.|||. ....++.+.+..+|+++.|+|+.++.......+-+.+ .++|+++|+||+|+..
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~ 64 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIMLLNKADKAD 64 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEEEEECGGGSC
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEEEEECcccCC
Confidence 44679997 4678899999999999999999987666543333332 5899999999999864
No 227
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.97 E-value=4.8e-05 Score=73.12 Aligned_cols=143 Identities=15% Similarity=0.063 Sum_probs=83.1
Q ss_pred eEEEE-cCCCCchHHHHHHHHHhhCC--cccceeeccCCccccchhhhhhccee-EeecEEEEeecCeeEEEEeCCCC-C
Q 007325 92 NIGIM-AHIDAGKTTTTERVLFYTGR--NYKIGEVHEGTATMDWMEQEQERGIT-ITSAATTTYWNKHRINIIDTPGH-V 166 (608)
Q Consensus 92 ~i~iv-G~~~~GKTTL~~~ll~~~g~--~~~~g~~~~g~~~~d~~~~e~~~giT-i~~~~~~~~~~~~~i~liDTPG~-~ 166 (608)
.|+++ +..|+||||++-.|...... ..-.-..+......++...+ +-... +......--...+.+.+||||+. .
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g~VlliD~D~q~~~~~~~~~~-~l~~~vi~~~~l~~l~~~yD~viiD~p~~~~ 80 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQGETLLIDGDPNRSATGWGKRG-SLPFKVVDERQAAKYAPKYQNIVIDTQARPE 80 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHS-CCSSEEEEGGGHHHHGGGCSEEEEEEECCCS
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcCCEEEEECCCCCCHHHHhcCC-CCCcceeCHHHHHHhhhcCCEEEEeCCCCcC
Confidence 45564 67899999999998633211 11111222222222222110 00000 00000000024688999999997 5
Q ss_pred CchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhc-CCCEEEEEeCCCcCC-CcHHHHHHHHHHhhCCc
Q 007325 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY-GVPRICFVNKMDRLG-ANFFRTRDMIVTNLGAK 238 (608)
Q Consensus 167 df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~-~~p~ivviNK~D~~~-~~~~~~~~~i~~~l~~~ 238 (608)
.. .+..++..+|.+|+++.+...-...+...++.+... +.+..+|+|++|... ....+..+.+++ ++..
T Consensus 81 ~~--~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~~~~~~~~~~~l~~-~g~~ 151 (209)
T 3cwq_A 81 DE--DLEALADGCDLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTIIPPYPSKDGDEARQLLTT-AGLP 151 (209)
T ss_dssp SS--HHHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSSEEEEECSBCCTTSCHHHHHHHHHHH-TTCC
T ss_pred cH--HHHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhccCCCEEEEEEecCCccchHHHHHHHHHHH-cCCc
Confidence 43 456788899999999988765555566666777663 788889999999765 334455555555 6654
No 228
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.95 E-value=1.4e-05 Score=83.84 Aligned_cols=64 Identities=17% Similarity=0.018 Sum_probs=41.8
Q ss_pred eEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCC
Q 007325 156 RINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (608)
Q Consensus 156 ~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (608)
.+.-+|+| +.+|...+....+.+|++|+|+|+.+.......++.+.+ .++|+++|+||+|+...
T Consensus 50 ~~~~v~~~-~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l--~~~piilV~NK~DLl~~ 113 (369)
T 3ec1_A 50 EVQDVPLD-DDDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFA--ADNPILLVGNKADLLPR 113 (369)
T ss_dssp ----------CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHC--TTSCEEEEEECGGGSCT
T ss_pred cccCCcCC-HHHHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHh--CCCCEEEEEEChhcCCC
Confidence 34445554 778998888888999999999999976543332232222 37899999999998653
No 229
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.89 E-value=6.5e-05 Score=75.03 Aligned_cols=60 Identities=12% Similarity=0.139 Sum_probs=41.8
Q ss_pred CCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHH----HHH---H-hcCCCEEEEEeC-CCcCCC
Q 007325 163 PGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW----RQA---D-KYGVPRICFVNK-MDRLGA 222 (608)
Q Consensus 163 PG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~----~~~---~-~~~~p~ivviNK-~D~~~~ 222 (608)
-|+..+...+..++..+|++|+|||+++.-.....+-+ ..+ . ..++|++|+.|| .|++++
T Consensus 195 GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A 263 (312)
T 3l2o_B 195 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR 263 (312)
T ss_dssp --CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC
Confidence 36778899999999999999999999865322222211 222 1 258999999997 587654
No 230
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=97.85 E-value=0.00018 Score=71.58 Aligned_cols=87 Identities=8% Similarity=-0.075 Sum_probs=60.7
Q ss_pred cCeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEE-EEEeCCCcCC------CcH-
Q 007325 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLG------ANF- 224 (608)
Q Consensus 153 ~~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~i-vviNK~D~~~------~~~- 224 (608)
..+.+.|||||+...........+..+|.+|+|+.............++.+...+++++ +|+|+.|... .+.
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~ 206 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSYFVCPNCGHKSYIF 206 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCCEECTTTCCEECTT
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCCccCCcccccccccc
Confidence 56889999999976543333334457899999998887666667777788888889987 8999998411 111
Q ss_pred -HHHHHHHHHhhCCcc
Q 007325 225 -FRTRDMIVTNLGAKP 239 (608)
Q Consensus 225 -~~~~~~i~~~l~~~~ 239 (608)
...++++.+.++...
T Consensus 207 ~~~~~~~~~~~~g~~~ 222 (262)
T 2ph1_A 207 GEGKGESLAKKYNIGF 222 (262)
T ss_dssp CCCCHHHHHHHTTCSE
T ss_pred cccHHHHHHHHcCCCe
Confidence 234667777777643
No 231
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.84 E-value=5.1e-05 Score=84.91 Aligned_cols=69 Identities=14% Similarity=0.235 Sum_probs=40.6
Q ss_pred CeeEEEEeCCCCCCc---------hHHHHHHHHh----c-CeEEEEEcCCCCCc-hhHHHHHHHHHhcCCCEEEEEeCCC
Q 007325 154 KHRINIIDTPGHVDF---------TLEVERALRV----L-DGAICLFDSVAGVE-PQSETVWRQADKYGVPRICFVNKMD 218 (608)
Q Consensus 154 ~~~i~liDTPG~~df---------~~~~~~~l~~----~-D~~i~VvDa~~g~~-~~t~~~~~~~~~~~~p~ivviNK~D 218 (608)
...+.++|.||...- ...+...++. - ..+++++++..... .....+.+.+...+.+.|+|+||.|
T Consensus 146 ~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~D 225 (608)
T 3szr_A 146 VPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPD 225 (608)
T ss_dssp SCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGG
T ss_pred CCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchh
Confidence 356999999986541 2233333332 2 45666666654332 2334455555556889999999999
Q ss_pred cCCC
Q 007325 219 RLGA 222 (608)
Q Consensus 219 ~~~~ 222 (608)
+...
T Consensus 226 lv~~ 229 (608)
T 3szr_A 226 LVDK 229 (608)
T ss_dssp GSSS
T ss_pred hcCc
Confidence 8754
No 232
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.84 E-value=1.6e-05 Score=80.35 Aligned_cols=59 Identities=24% Similarity=0.263 Sum_probs=35.0
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCC
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 167 (608)
+..+|+++|.+|+|||||+|+|+.... ...+ ...|+|.......+ +..+.++||||..+
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~--~~~~---------------~~~g~T~~~~~~~~---~~~~~l~DtpG~~~ 177 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNI--AKTG---------------DRPGITTSQQWVKV---GKELELLDTPGILW 177 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCC--C---------------------------CCEEE---TTTEEEEECCCCCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCce--eecC---------------CCCCeeeeeEEEEe---CCCEEEEECcCcCC
Confidence 446899999999999999999962111 1111 12345555443322 45799999999865
No 233
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.82 E-value=0.00013 Score=74.95 Aligned_cols=80 Identities=18% Similarity=0.138 Sum_probs=47.4
Q ss_pred cCeeEEEEeCCCCCCchHHHHHHHH------------hcCeEEEEEcCCCCCchhHHHHHHHHHhc--CCCE-EEEEeCC
Q 007325 153 NKHRINIIDTPGHVDFTLEVERALR------------VLDGAICLFDSVAGVEPQSETVWRQADKY--GVPR-ICFVNKM 217 (608)
Q Consensus 153 ~~~~i~liDTPG~~df~~~~~~~l~------------~~D~~i~VvDa~~g~~~~t~~~~~~~~~~--~~p~-ivviNK~ 217 (608)
.++.+.||||||...........+. .+|.+++|+|+..+ + . .+.++... ..++ -+|+||+
T Consensus 190 ~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~-~-~---~l~~~~~~~~~~~i~GvVltk~ 264 (320)
T 1zu4_A 190 QNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG-Q-N---GVIQAEEFSKVADVSGIILTKM 264 (320)
T ss_dssp TTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT-H-H---HHHHHHHHTTTSCCCEEEEECG
T ss_pred cCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc-H-H---HHHHHHHHhhcCCCcEEEEeCC
Confidence 5789999999997664333322221 26889999999864 2 2 22223222 2333 4789999
Q ss_pred CcCCCcHHHHHHHHHHhhCCcc
Q 007325 218 DRLGANFFRTRDMIVTNLGAKP 239 (608)
Q Consensus 218 D~~~~~~~~~~~~i~~~l~~~~ 239 (608)
|... ... .+.++...++..+
T Consensus 265 d~~~-~~g-~~~~~~~~~~~Pi 284 (320)
T 1zu4_A 265 DSTS-KGG-IGLAIKELLNIPI 284 (320)
T ss_dssp GGCS-CTT-HHHHHHHHHCCCE
T ss_pred CCCC-chh-HHHHHHHHHCcCE
Confidence 9643 222 3445555666543
No 234
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.80 E-value=1.3e-05 Score=81.87 Aligned_cols=56 Identities=14% Similarity=0.095 Sum_probs=40.0
Q ss_pred CCchHHHHHHHHhcCeEEEEEcCCCCC-chhH-HHHHHHHHhcCCCEEEEEeCCCcCC
Q 007325 166 VDFTLEVERALRVLDGAICLFDSVAGV-EPQS-ETVWRQADKYGVPRICFVNKMDRLG 221 (608)
Q Consensus 166 ~df~~~~~~~l~~~D~~i~VvDa~~g~-~~~t-~~~~~~~~~~~~p~ivviNK~D~~~ 221 (608)
..|......+++.+|++++|+|+++.. .... ...+..+...++|+++|+||+|+..
T Consensus 67 er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~ 124 (302)
T 2yv5_A 67 ERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLN 124 (302)
T ss_dssp CCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCC
T ss_pred ChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCC
Confidence 334333334688999999999999753 4333 3344556678999999999999864
No 235
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.76 E-value=2.6e-05 Score=81.83 Aligned_cols=56 Identities=13% Similarity=-0.086 Sum_probs=39.3
Q ss_pred CCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCC
Q 007325 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (608)
Q Consensus 165 ~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (608)
..+|...+....+.+|++++|+|+.+........+.+. ..++|+++|+||+|+...
T Consensus 56 ~e~f~~~l~~i~~~~~~il~VvD~~d~~~~~~~~l~~~--~~~~p~ilV~NK~DL~~~ 111 (368)
T 3h2y_A 56 DDDFLRILNGIGKSDALVVKIVDIFDFNGSWLPGLHRF--VGNNKVLLVGNKADLIPK 111 (368)
T ss_dssp CHHHHHHHHHHHHSCCEEEEEEETTSHHHHCCTTHHHH--SSSSCEEEEEECGGGSCT
T ss_pred HHHHHHHHHHHhccCcEEEEEEECCCCcccHHHHHHHH--hCCCcEEEEEEChhcCCc
Confidence 45788888888889899999999987321111111111 137999999999998643
No 236
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.73 E-value=0.00015 Score=78.12 Aligned_cols=144 Identities=17% Similarity=0.125 Sum_probs=72.6
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhhCCcccceee--ccCCcccc----chh-hhhhcceeEeecEEEE----------
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEV--HEGTATMD----WME-QEQERGITITSAATTT---------- 150 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~--~~g~~~~d----~~~-~e~~~giTi~~~~~~~---------- 150 (608)
.....++|+|..|+|||||+..|..... ...|++ ..+..+.. ... ....+++.+-.....+
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~--~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l 368 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFE--QQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAI 368 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhh--hcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHH
Confidence 3456899999999999999999963211 011221 11111100 000 0012233221111000
Q ss_pred ---eecCeeEEEEeCCCCCCchH----HHH---HHHHh-----cCeEEEEEcCCCCCchhHHHHHHHHH-hcCCCEEEEE
Q 007325 151 ---YWNKHRINIIDTPGHVDFTL----EVE---RALRV-----LDGAICLFDSVAGVEPQSETVWRQAD-KYGVPRICFV 214 (608)
Q Consensus 151 ---~~~~~~i~liDTPG~~df~~----~~~---~~l~~-----~D~~i~VvDa~~g~~~~t~~~~~~~~-~~~~p~ivvi 214 (608)
...++.+.||||+|...... ++. +.++. -+-+++|+|+..|... ....+.+. ..++. .+++
T Consensus 369 ~~a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~a--l~~ak~f~~~~~it-gvIl 445 (503)
T 2yhs_A 369 QAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNA--VSQAKLFHEAVGLT-GITL 445 (503)
T ss_dssp HHHHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHH--HHHHHHHHHHTCCS-EEEE
T ss_pred HHHHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHH--HHHHHHHHhhcCCC-EEEE
Confidence 01467899999999854322 222 22221 3467889999876322 22233333 23433 5789
Q ss_pred eCCCcCCCcHHHHHHHHHHhhCCc
Q 007325 215 NKMDRLGANFFRTRDMIVTNLGAK 238 (608)
Q Consensus 215 NK~D~~~~~~~~~~~~i~~~l~~~ 238 (608)
||+|-. +.. ..+-.+...++..
T Consensus 446 TKLD~t-akg-G~~lsi~~~~~~P 467 (503)
T 2yhs_A 446 TKLDGT-AKG-GVIFSVADQFGIP 467 (503)
T ss_dssp ECGGGC-SCC-THHHHHHHHHCCC
T ss_pred EcCCCc-ccc-cHHHHHHHHHCCC
Confidence 999963 222 2344455555643
No 237
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.68 E-value=7.1e-05 Score=77.15 Aligned_cols=141 Identities=17% Similarity=0.058 Sum_probs=72.6
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhh----CCcccceeeccCCccccchhhh------hhcceeEeecEEEE--------
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYT----GRNYKIGEVHEGTATMDWMEQE------QERGITITSAATTT-------- 150 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~----g~~~~~g~~~~g~~~~d~~~~e------~~~giTi~~~~~~~-------- 150 (608)
+...++++|++|+|||||+..|.... |.+.-.+. + . ......+ +..|+.+.......
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~-D---~-~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e 202 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAAS-D---T-FRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYD 202 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE-C---C-SSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEee-c---c-cccchHHHHHHHHHHcCceEEeccccCCHHHHHHH
Confidence 34689999999999999999996321 11111111 0 0 0000011 12232211110000
Q ss_pred -----eecCeeEEEEeCCCCCC----chHHHHHHH--HhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCc
Q 007325 151 -----YWNKHRINIIDTPGHVD----FTLEVERAL--RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDR 219 (608)
Q Consensus 151 -----~~~~~~i~liDTPG~~d----f~~~~~~~l--~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~ 219 (608)
...++.+.++||+|... +..++.... -..|-.++|+|+..+. +.....+.+...--...+++||+|.
T Consensus 203 ~l~~~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~--~~~~~~~~~~~~~~it~iilTKlD~ 280 (328)
T 3e70_C 203 AIQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN--AIVEQARQFNEAVKIDGIILTKLDA 280 (328)
T ss_dssp HHHHHHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT--HHHHHHHHHHHHSCCCEEEEECGGG
T ss_pred HHHHHHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH--HHHHHHHHHHHhcCCCEEEEeCcCC
Confidence 01356788999999744 333332221 2358899999998763 3333333333322334788999996
Q ss_pred CCCcHHHHHHHHHHhhCCc
Q 007325 220 LGANFFRTRDMIVTNLGAK 238 (608)
Q Consensus 220 ~~~~~~~~~~~i~~~l~~~ 238 (608)
. +.....+ .+...++..
T Consensus 281 ~-a~~G~~l-~~~~~~~~p 297 (328)
T 3e70_C 281 D-ARGGAAL-SISYVIDAP 297 (328)
T ss_dssp C-SCCHHHH-HHHHHHTCC
T ss_pred c-cchhHHH-HHHHHHCCC
Confidence 3 3333333 344445543
No 238
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=97.66 E-value=9.8e-05 Score=73.20 Aligned_cols=84 Identities=11% Similarity=0.084 Sum_probs=57.1
Q ss_pred cCeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHh------cCCCEE-EEEeCCCcCCCcHH
Q 007325 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK------YGVPRI-CFVNKMDRLGANFF 225 (608)
Q Consensus 153 ~~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~------~~~p~i-vviNK~D~~~~~~~ 225 (608)
..+.+.|||||+.... ....++..+|.+|+|+++...-......+++.+.. .+++++ +|+|+.|.......
T Consensus 110 ~~yD~iiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~~~~~~ 187 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLSP--LTLNALAAAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGRTLLAQ 187 (257)
T ss_dssp TTCSEEEEECCSSCCH--HHHHHHHHCSEEEEEEESSTHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTTCSHHH
T ss_pred cCCCEEEEeCCCCCCH--HHHHHHHHCCeEEEEecCchHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCCcHHHH
Confidence 4688999999997653 35567788999999998875333333333333322 256764 88999986544445
Q ss_pred HHHHHHHHhhCCc
Q 007325 226 RTRDMIVTNLGAK 238 (608)
Q Consensus 226 ~~~~~i~~~l~~~ 238 (608)
+..+.+++.++..
T Consensus 188 ~~~~~l~~~~~~~ 200 (257)
T 1wcv_1 188 QVEAQLRAHFGEK 200 (257)
T ss_dssp HHHHHHHHHHGGG
T ss_pred HHHHHHHHHcccc
Confidence 6677888877654
No 239
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=97.65 E-value=0.00021 Score=72.71 Aligned_cols=82 Identities=16% Similarity=0.169 Sum_probs=55.2
Q ss_pred cCeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHh----cCCCEE-EEEeCCCcCCCcHHHH
Q 007325 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK----YGVPRI-CFVNKMDRLGANFFRT 227 (608)
Q Consensus 153 ~~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~----~~~p~i-vviNK~D~~~~~~~~~ 227 (608)
+.+.+.|||||+..... .+..++..+|.+|+|+++...-......+++.+.. .+++++ +|+|+.+.. ..
T Consensus 155 ~~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~-----~~ 228 (307)
T 3end_A 155 DDTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT-----DE 228 (307)
T ss_dssp SSCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC-----HH
T ss_pred ccCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcH-----HH
Confidence 35889999999865532 23346788999999998765333444455555554 455655 889999842 34
Q ss_pred HHHHHHhhCCccE
Q 007325 228 RDMIVTNLGAKPL 240 (608)
Q Consensus 228 ~~~i~~~l~~~~~ 240 (608)
++++.+.++....
T Consensus 229 ~~~~~~~~g~~v~ 241 (307)
T 3end_A 229 VDRFCKETNFRRL 241 (307)
T ss_dssp HHHHHHHHTCCEE
T ss_pred HHHHHHHcCCCce
Confidence 6677777776544
No 240
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=97.62 E-value=0.00025 Score=71.71 Aligned_cols=83 Identities=12% Similarity=0.011 Sum_probs=58.9
Q ss_pred cCeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHh------cCCCEE-EEEeCCCcCCCcHH
Q 007325 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK------YGVPRI-CFVNKMDRLGANFF 225 (608)
Q Consensus 153 ~~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~------~~~p~i-vviNK~D~~~~~~~ 225 (608)
..+.+.|||||+.... ....++..+|.+|+|+.+...-.......++.+.. .+++++ +|+|+.|.......
T Consensus 153 ~~yD~IiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~~~~~ 230 (298)
T 2oze_A 153 SDYDLIIIDTVPTPSV--YTNNAIVASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDSATIK 230 (298)
T ss_dssp GGCSEEEEEECSSCSH--HHHHHHHHCSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTCHHHH
T ss_pred cCCCEEEEECCCCccH--HHHHHHHHCCeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCcHHHH
Confidence 3578999999997653 34567778999999999876555555555554443 366754 78999997554445
Q ss_pred HHHHHHHHhhCC
Q 007325 226 RTRDMIVTNLGA 237 (608)
Q Consensus 226 ~~~~~i~~~l~~ 237 (608)
..++++.+.++.
T Consensus 231 ~~~~~~~~~~~~ 242 (298)
T 2oze_A 231 SNLEELYKQHKE 242 (298)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHHhcc
Confidence 677888888774
No 241
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.58 E-value=2.9e-05 Score=77.58 Aligned_cols=55 Identities=22% Similarity=0.337 Sum_probs=39.2
Q ss_pred CCCCC-chHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCC
Q 007325 163 PGHVD-FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (608)
Q Consensus 163 PG~~d-f~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~ 221 (608)
|||.. ...++...+..+|.+++|+|+.++.......+ ..+ ++|+++|+||+|+..
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l-~ll---~k~~iivlNK~DL~~ 60 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGV-DFS---RKETIILLNKVDIAD 60 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTS-CCT---TSEEEEEEECGGGSC
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHH-Hhc---CCCcEEEEECccCCC
Confidence 88875 45688899999999999999997765543221 112 899999999999864
No 242
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=97.56 E-value=3.8e-05 Score=75.28 Aligned_cols=86 Identities=13% Similarity=0.236 Sum_probs=61.1
Q ss_pred cCeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCC-EEEEEeCCCcCCCcHHHHHHHH
Q 007325 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGANFFRTRDMI 231 (608)
Q Consensus 153 ~~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p-~ivviNK~D~~~~~~~~~~~~i 231 (608)
..+.+.|||||+.... ....++..+|.+|+|+++...-......+.+.+...+++ +.+|+||.+. ....+++
T Consensus 130 ~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~~-----~~~~~~~ 202 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRN-----IKEEKLI 202 (254)
T ss_dssp TCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEECC-----HHHHHHH
T ss_pred CCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCCC-----hhHHHHH
Confidence 5789999999986654 556678999999999988754444555566666677765 5688999983 2346677
Q ss_pred HHhhCCccEEEecc
Q 007325 232 VTNLGAKPLVVQLP 245 (608)
Q Consensus 232 ~~~l~~~~~~~~~p 245 (608)
.+.++..+....+|
T Consensus 203 ~~~~~~~~~~~~Ip 216 (254)
T 3kjh_A 203 KKHLPEDKILGIIP 216 (254)
T ss_dssp HHHSCGGGEEEEEE
T ss_pred HHHhcCCccccccc
Confidence 88887444444555
No 243
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.56 E-value=0.0003 Score=71.74 Aligned_cols=146 Identities=17% Similarity=0.140 Sum_probs=72.0
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhh---CCcccceeeccCC-ccccch-hhhhhcceeEeecE-------------EEE
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYT---GRNYKIGEVHEGT-ATMDWM-EQEQERGITITSAA-------------TTT 150 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~---g~~~~~g~~~~g~-~~~d~~-~~e~~~giTi~~~~-------------~~~ 150 (608)
....|+|+|.+|+||||++..|.... +........+... ...+.. ..-...|+.+-... ...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a 182 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHA 182 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHH
Confidence 45689999999999999999996332 1111111101000 000000 00011222221100 000
Q ss_pred eecCeeEEEEeCCCCCCchHHHHHH----HH--------hcCeEEEEEcCCCCCchhHHHHHHHHHhcCCC-EEEEEeCC
Q 007325 151 YWNKHRINIIDTPGHVDFTLEVERA----LR--------VLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKM 217 (608)
Q Consensus 151 ~~~~~~i~liDTPG~~df~~~~~~~----l~--------~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p-~ivviNK~ 217 (608)
...++.+.|+||||........... .+ ..|.+++|+|+..+. ......+..... .+ .-+|+||+
T Consensus 183 ~~~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~--~~l~~a~~~~~~-~~i~gvVlTk~ 259 (306)
T 1vma_A 183 LARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQAKIFKEA-VNVTGIILTKL 259 (306)
T ss_dssp HHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHHHHHHHHH-SCCCEEEEECG
T ss_pred HhcCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH--HHHHHHHHHHhc-CCCCEEEEeCC
Confidence 1246789999999975544333221 11 257889999997431 111222222222 33 35678999
Q ss_pred CcCCCcHHHHHHHHHHhhCCcc
Q 007325 218 DRLGANFFRTRDMIVTNLGAKP 239 (608)
Q Consensus 218 D~~~~~~~~~~~~i~~~l~~~~ 239 (608)
|.. +.... +-++...++.++
T Consensus 260 D~~-~~gG~-~l~~~~~~~~Pi 279 (306)
T 1vma_A 260 DGT-AKGGI-TLAIARELGIPI 279 (306)
T ss_dssp GGC-SCTTH-HHHHHHHHCCCE
T ss_pred CCc-cchHH-HHHHHHHHCCCE
Confidence 964 33333 455566666543
No 244
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.56 E-value=0.00025 Score=75.42 Aligned_cols=146 Identities=16% Similarity=0.147 Sum_probs=73.9
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcc---cceeeccCC-ccccchh-hhhhcceeEeecE-----E--------EE
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNY---KIGEVHEGT-ATMDWME-QEQERGITITSAA-----T--------TT 150 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~---~~g~~~~g~-~~~d~~~-~e~~~giTi~~~~-----~--------~~ 150 (608)
....|+++|..|+||||++..|........ .....+... ...+... .....|+.+-... . .+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999964321111 111111100 0000000 0011222211110 0 00
Q ss_pred eecCeeEEEEeCCCCCCchHHHH----HH--HHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCC-EEEEEeCCCcCCCc
Q 007325 151 YWNKHRINIIDTPGHVDFTLEVE----RA--LRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGAN 223 (608)
Q Consensus 151 ~~~~~~i~liDTPG~~df~~~~~----~~--l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p-~ivviNK~D~~~~~ 223 (608)
...++.+.||||||......... .. ....|.+++|+|+..+.. .....+.... .++ .-+|+||+|... .
T Consensus 177 ~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~--av~~a~~f~~-~l~i~GVIlTKlD~~~-~ 252 (425)
T 2ffh_A 177 RLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQE--ALSVARAFDE-KVGVTGLVLTKLDGDA-R 252 (425)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTH--HHHHHHHHHH-HTCCCEEEEESGGGCS-S
T ss_pred HHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchHH--HHHHHHHHHh-cCCceEEEEeCcCCcc-c
Confidence 12568899999999765422222 11 224689999999986522 2222222222 244 467899999643 2
Q ss_pred HHHHHHHHHHhhCCcc
Q 007325 224 FFRTRDMIVTNLGAKP 239 (608)
Q Consensus 224 ~~~~~~~i~~~l~~~~ 239 (608)
... .-++...++..+
T Consensus 253 ~g~-alsi~~~~g~PI 267 (425)
T 2ffh_A 253 GGA-ALSARHVTGKPI 267 (425)
T ss_dssp CHH-HHHHHHHHCCCE
T ss_pred HHH-HHHHHHHHCCCE
Confidence 232 334555666543
No 245
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.55 E-value=3.8e-05 Score=76.71 Aligned_cols=58 Identities=22% Similarity=0.287 Sum_probs=35.5
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCc
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 168 (608)
.+++++|.+|+|||||+|+|..... ...+. ..|+|.......+ +..+.+|||||..+.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~--~~~~~---------------~~g~T~~~~~~~~---~~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA--SSVGA---------------QPGITKGIQWFSL---ENGVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC---------------------------CCSCEEEC---TTSCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc--cccCC---------------CCCCccceEEEEe---CCCEEEEECCCcccC
Confidence 5899999999999999999962211 11111 1344544432222 357899999998764
No 246
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.47 E-value=0.00061 Score=69.39 Aligned_cols=144 Identities=18% Similarity=0.122 Sum_probs=71.7
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceee--ccCCccc-c-chhhh---hhcceeEeecEEE----------E-
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEV--HEGTATM-D-WMEQE---QERGITITSAATT----------T- 150 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~--~~g~~~~-d-~~~~e---~~~giTi~~~~~~----------~- 150 (608)
+...|+|+|++|||||||++.|....... .|++ .....+. . ..... ..+++.+-..... +
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~--~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL--GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH
Confidence 34689999999999999999996332111 1111 1100000 0 00000 1122211110000 0
Q ss_pred --eecCeeEEEEeCCCCCCch----HHHHH---HHH-----hcCeEEEEEcCCCCCchhHHHHHHHHH-hcCCCEEEEEe
Q 007325 151 --YWNKHRINIIDTPGHVDFT----LEVER---ALR-----VLDGAICLFDSVAGVEPQSETVWRQAD-KYGVPRICFVN 215 (608)
Q Consensus 151 --~~~~~~i~liDTPG~~df~----~~~~~---~l~-----~~D~~i~VvDa~~g~~~~t~~~~~~~~-~~~~p~ivviN 215 (608)
...+..+.++||+|..+.. .+... ++. ..+.+++++|+..+.. ....++.+. ..++ .++++|
T Consensus 179 ~~~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~--~~~~~~~~~~~~~~-t~iivT 255 (304)
T 1rj9_A 179 AMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN--GLEQAKKFHEAVGL-TGVIVT 255 (304)
T ss_dssp HHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH--HHHHHHHHHHHHCC-SEEEEE
T ss_pred HHHhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHH--HHHHHHHHHHHcCC-cEEEEE
Confidence 0134567899999976432 22221 111 1466888999987643 222333333 3344 578899
Q ss_pred CCCcCCCcHHHHHHHHHHhhCCcc
Q 007325 216 KMDRLGANFFRTRDMIVTNLGAKP 239 (608)
Q Consensus 216 K~D~~~~~~~~~~~~i~~~l~~~~ 239 (608)
|.|.. +... .+-.+...++..+
T Consensus 256 h~d~~-a~gg-~~l~i~~~~~~pi 277 (304)
T 1rj9_A 256 KLDGT-AKGG-VLIPIVRTLKVPI 277 (304)
T ss_dssp CTTSS-CCCT-THHHHHHHHCCCE
T ss_pred CCccc-cccc-HHHHHHHHHCCCe
Confidence 99964 3322 3335555566543
No 247
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=97.47 E-value=0.00056 Score=67.70 Aligned_cols=82 Identities=17% Similarity=0.241 Sum_probs=59.6
Q ss_pred cCeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEE-EEEeCCCcCCCcHHHHHHHH
Q 007325 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGANFFRTRDMI 231 (608)
Q Consensus 153 ~~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~i-vviNK~D~~~~~~~~~~~~i 231 (608)
..+.+.|||||+... .....++..+|.+|+|+++...-.......++.+...+.+.+ +|+|++|..... ..++++
T Consensus 109 ~~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~~~--~~~~~~ 184 (263)
T 1hyq_A 109 ESTDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTLGIE--MAKNEI 184 (263)
T ss_dssp HTCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECTTTHH--HHHHHH
T ss_pred hhCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCChhHHHHHHHHHHHHHhcCCCeeEEEEccCCccccc--chHHHH
Confidence 468899999998765 567778899999999998875444455566666766666554 789999864332 556777
Q ss_pred HHhhCCc
Q 007325 232 VTNLGAK 238 (608)
Q Consensus 232 ~~~l~~~ 238 (608)
.+.++..
T Consensus 185 ~~~~~~~ 191 (263)
T 1hyq_A 185 EAILEAK 191 (263)
T ss_dssp HHHTTSC
T ss_pred HHHhCCC
Confidence 7777754
No 248
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=97.37 E-value=0.00078 Score=65.40 Aligned_cols=82 Identities=15% Similarity=0.140 Sum_probs=58.3
Q ss_pred cCeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCE-EEEEeCCCcCCCcHHHHHHHH
Q 007325 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLGANFFRTRDMI 231 (608)
Q Consensus 153 ~~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~-ivviNK~D~~~~~~~~~~~~i 231 (608)
..+.+.|||||+... .....++..+|.+|+|+++...-.......++.+...+.+. -+|+||.|..... ..++++
T Consensus 110 ~~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~~~--~~~~~~ 185 (237)
T 1g3q_A 110 DKFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRSDRD--IPPEAA 185 (237)
T ss_dssp GGCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSCTTC--CCHHHH
T ss_pred hcCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCcccHHHHHHHHHHHHhCCCceEEEEEecCCcccch--hHHHHH
Confidence 357899999998655 56777889999999999887544445566667777667655 4788999864432 334556
Q ss_pred HHhhCCc
Q 007325 232 VTNLGAK 238 (608)
Q Consensus 232 ~~~l~~~ 238 (608)
.+.++..
T Consensus 186 ~~~~~~~ 192 (237)
T 1g3q_A 186 EDVMEVP 192 (237)
T ss_dssp HHHHCSC
T ss_pred HHHhCcc
Confidence 6666654
No 249
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.29 E-value=0.00031 Score=71.27 Aligned_cols=145 Identities=12% Similarity=0.074 Sum_probs=70.4
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHh----hCCcccceeeccCC-ccccchh-hhhhcceeEeecE--EEE-----eecCe
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFY----TGRNYKIGEVHEGT-ATMDWME-QEQERGITITSAA--TTT-----YWNKH 155 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~----~g~~~~~g~~~~g~-~~~d~~~-~e~~~giTi~~~~--~~~-----~~~~~ 155 (608)
+...|+++|+.|+||||++..|... .|........+... ...+... .-...|+.+.... ..+ ...++
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~ 183 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEY 183 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCC
Confidence 4568999999999999999999632 23111111111100 0000000 0001111110000 000 12567
Q ss_pred eEEEEeCCCCCCchHHHHH----HHH--hcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCCcHHHHHH
Q 007325 156 RINIIDTPGHVDFTLEVER----ALR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRD 229 (608)
Q Consensus 156 ~i~liDTPG~~df~~~~~~----~l~--~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~ 229 (608)
.+.|+||||.......... .+. ..|.+++|+|++.+.. ....+.+.....++ .-+++||+|... ....++
T Consensus 184 dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~-~~~~~~~~~~~l~~-~giVltk~D~~~-~~g~~~- 259 (296)
T 2px0_A 184 DHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYE-DMKHIVKRFSSVPV-NQYIFTKIDETT-SLGSVF- 259 (296)
T ss_dssp SEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHH-HHHHHTTTTSSSCC-CEEEEECTTTCS-CCHHHH-
T ss_pred CEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHH-HHHHHHHHHhcCCC-CEEEEeCCCccc-chhHHH-
Confidence 8999999998765433222 222 2467899999987532 12222222221222 246779999753 333333
Q ss_pred HHHHhhCC
Q 007325 230 MIVTNLGA 237 (608)
Q Consensus 230 ~i~~~l~~ 237 (608)
++...++.
T Consensus 260 ~~~~~~~~ 267 (296)
T 2px0_A 260 NILAESKI 267 (296)
T ss_dssp HHHHTCSC
T ss_pred HHHHHHCc
Confidence 34445554
No 250
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=97.28 E-value=0.00019 Score=72.37 Aligned_cols=82 Identities=18% Similarity=0.201 Sum_probs=52.6
Q ss_pred CeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCC----CCchhHHH-------------HH--HHHHh----cC-CC
Q 007325 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVA----GVEPQSET-------------VW--RQADK----YG-VP 209 (608)
Q Consensus 154 ~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~----g~~~~t~~-------------~~--~~~~~----~~-~p 209 (608)
.+.+.|||||+.. ...+..++..+|.+|+|+.... +....... +| +.+.. .+ .+
T Consensus 103 ~yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 180 (286)
T 2xj4_A 103 ECDFILIDTPGGD--SAITRMAHGRADLVVTPMNDSFVDFDMLGTVDPVTLELTKPSLYSLTVWEGRKQRALSGQRQAMD 180 (286)
T ss_dssp HCSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESSHHHHTTTEEECTTTCCEEEECHHHHHHHHHHHHHHHHCSSCCCE
T ss_pred cCCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCCccHHHHHHHHHHHhhhccccchhhhhhhcchhhhhhccCCcccc
Confidence 4789999999975 4677888999999999998762 11111111 22 32322 24 67
Q ss_pred EEEEEeCCCcCC-CcHHHHHHHHHHh---hCC
Q 007325 210 RICFVNKMDRLG-ANFFRTRDMIVTN---LGA 237 (608)
Q Consensus 210 ~ivviNK~D~~~-~~~~~~~~~i~~~---l~~ 237 (608)
+.+|+|++|... ....+..+.+++. +|.
T Consensus 181 ~~vV~N~~~~~~~~~~~~~~~~l~~~~~~~g~ 212 (286)
T 2xj4_A 181 WVVLRNRLATTEARNRKRLEDRLNALAKRVGF 212 (286)
T ss_dssp EEEEEECCTTCCGGGHHHHHHHHHHHHHHHCC
T ss_pred EEEEEeeecCCCcchhHHHHHHHHHHHHHcCC
Confidence 789999999765 3344445555543 665
No 251
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.28 E-value=0.00076 Score=72.12 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=23.9
Q ss_pred CCCceeEEEEcCCCCchHHHHHHHHHh
Q 007325 87 LKDYRNIGIMAHIDAGKTTTTERVLFY 113 (608)
Q Consensus 87 ~~~~~~i~ivG~~~~GKTTL~~~ll~~ 113 (608)
..++-.|+|+|.+++|||||+|+|+..
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhhh
Confidence 456789999999999999999999854
No 252
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.24 E-value=0.00077 Score=68.33 Aligned_cols=146 Identities=18% Similarity=0.184 Sum_probs=72.2
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhh---CCcccceeeccCC-ccccch-hhhhhcceeEeec-----EEE--------E
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYT---GRNYKIGEVHEGT-ATMDWM-EQEQERGITITSA-----ATT--------T 150 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~---g~~~~~g~~~~g~-~~~d~~-~~e~~~giTi~~~-----~~~--------~ 150 (608)
....++++|..|+||||++..|.... +........+... ...... ..-...++.+-.. ... +
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999996331 1111111111110 000000 0001122222110 000 0
Q ss_pred eecCeeEEEEeCCCCCCch----HHHHHHH--HhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCC-EEEEEeCCCcCCCc
Q 007325 151 YWNKHRINIIDTPGHVDFT----LEVERAL--RVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGAN 223 (608)
Q Consensus 151 ~~~~~~i~liDTPG~~df~----~~~~~~l--~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p-~ivviNK~D~~~~~ 223 (608)
...++.+.|+||||..... .++.... ...|.+++|+|+..+ .......+.... .++ .-+|+||+|... .
T Consensus 177 ~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~--~~~~~~~~~~~~-~~~i~givlnk~d~~~-~ 252 (295)
T 1ls1_A 177 RLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDE-KVGVTGLVLTKLDGDA-R 252 (295)
T ss_dssp HHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--HHHHHHHHHHHH-HTCCCEEEEECGGGCS-S
T ss_pred HhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc--HHHHHHHHHHhh-cCCCCEEEEECCCCCc-c
Confidence 0146889999999865432 2222222 246889999998754 222222222222 244 457899999653 3
Q ss_pred HHHHHHHHHHhhCCcc
Q 007325 224 FFRTRDMIVTNLGAKP 239 (608)
Q Consensus 224 ~~~~~~~i~~~l~~~~ 239 (608)
...++ ++...++.++
T Consensus 253 ~g~~~-~~~~~~~~pi 267 (295)
T 1ls1_A 253 GGAAL-SARHVTGKPI 267 (295)
T ss_dssp CHHHH-HHHHHHCCCE
T ss_pred HHHHH-HHHHHHCcCE
Confidence 33333 4445556543
No 253
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=97.24 E-value=0.0012 Score=65.50 Aligned_cols=78 Identities=15% Similarity=0.089 Sum_probs=53.7
Q ss_pred cCeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhc--CCCEEEEEeCCCcCCCcHHHHHHH
Q 007325 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY--GVPRICFVNKMDRLGANFFRTRDM 230 (608)
Q Consensus 153 ~~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~--~~p~ivviNK~D~~~~~~~~~~~~ 230 (608)
..+.+.|||||+... .....++..+|.+|+|+.+...-......+++.+... ++++.+|+|+.+... ...+..+.
T Consensus 143 ~~yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~~~-~~~~~~~~ 219 (267)
T 3k9g_A 143 YKYDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFKKNR-THKTLFEI 219 (267)
T ss_dssp TTCSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTTCCCCEEEEEEEECTTC-SCCHHHHH
T ss_pred cCCCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHhccCCEEEEEecccCcc-hHHHHHHH
Confidence 457899999999764 4567788889999999988754444455556666655 467889999995433 22344444
Q ss_pred HHH
Q 007325 231 IVT 233 (608)
Q Consensus 231 i~~ 233 (608)
+++
T Consensus 220 l~~ 222 (267)
T 3k9g_A 220 LKT 222 (267)
T ss_dssp HTT
T ss_pred Hhc
Confidence 443
No 254
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=97.20 E-value=0.0021 Score=54.77 Aligned_cols=78 Identities=22% Similarity=0.188 Sum_probs=53.9
Q ss_pred CCCeEEEEEEeeecCCCceEEEEEEecceeCCCCEEEeCCCC-ceeecceEEEeecCceeecCeeecCCEEEE--cCCC-
Q 007325 387 DEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKG-KKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK- 462 (608)
Q Consensus 387 ~~p~~~~V~K~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~-~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~- 462 (608)
.-|....|.++..-=+ |.+..+||.+|+|++|+.| +.+ ...+|.+|.. ..+.+++|.|||.|++ .|..
T Consensus 32 ~~P~k~~ilp~~~~vF-gpvivGrVe~G~LK~G~~V---Pg~~~vg~VkSIE~----~~e~v~eA~~GdnVai~Ikg~~~ 103 (116)
T 1xe1_A 32 KPAGKVVVEEVVNIMG-KDVIIGTVESGMIGVGFKV---KGPSGIGGIVRIER----NREKVEFAIAGDRIGISIEGKIG 103 (116)
T ss_dssp SCSEEEEEEEEEEETT-EEEEEEEEEEEEEETTCEE---ECSSCEEEEEEEEE----TTEEESEEETTCEEEEEEESCCC
T ss_pred cCcEEEEEEecCCeEE-CCeeEEEEeEEEEcCCCCc---CCCceEEEEEEEEE----CCcCcCCcCCCCEEEEEEECCcc
Confidence 3566666666333334 7888899999999999999 333 3444555532 3478999999999998 3433
Q ss_pred cccccceecc
Q 007325 463 DTITGETLCD 472 (608)
Q Consensus 463 ~~~~GdtL~~ 472 (608)
++..||+|..
T Consensus 104 ~I~~GdVLyv 113 (116)
T 1xe1_A 104 KVKKGDVLEI 113 (116)
T ss_dssp CCCTTCEEEE
T ss_pred ccCCCcEEEE
Confidence 5777887753
No 255
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=97.13 E-value=0.0037 Score=60.78 Aligned_cols=80 Identities=15% Similarity=0.082 Sum_probs=57.2
Q ss_pred CeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCC---CEEEEEeCCCcCCCcHHHHHHH
Q 007325 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGV---PRICFVNKMDRLGANFFRTRDM 230 (608)
Q Consensus 154 ~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~---p~ivviNK~D~~~~~~~~~~~~ 230 (608)
.+.+.|||||+..+. ....++..+|.+|+|+.....-...+...++.+...+. ..-+|+|+.|..... ..++
T Consensus 118 ~yD~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~~~---~~~~ 192 (245)
T 3ea0_A 118 FYDYIIVDFGASIDH--VGVWVLEHLDELCIVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNSRI---TSDE 192 (245)
T ss_dssp HCSEEEEEEESSCCT--THHHHGGGCSEEEEEECSSHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCTTS---CHHH
T ss_pred hCCEEEEeCCCCCch--HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCCCC---CHHH
Confidence 578999999997643 55667889999999998875445556666777776653 367889999864322 1256
Q ss_pred HHHhhCCc
Q 007325 231 IVTNLGAK 238 (608)
Q Consensus 231 i~~~l~~~ 238 (608)
+++.++..
T Consensus 193 ~~~~~~~~ 200 (245)
T 3ea0_A 193 IEKVIGRP 200 (245)
T ss_dssp HHHHHTSC
T ss_pred HHHHhCCC
Confidence 77777764
No 256
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=97.08 E-value=0.00063 Score=66.99 Aligned_cols=83 Identities=12% Similarity=0.094 Sum_probs=55.5
Q ss_pred CeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcC---------CCEEEEEeCCCcCCCcH
Q 007325 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYG---------VPRICFVNKMDRLGANF 224 (608)
Q Consensus 154 ~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~---------~p~ivviNK~D~~~~~~ 224 (608)
.+.+.|||||+... .....++..+|.+|+|+++...-......+++.+...+ ....+|+|+.|......
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~~~~~ 190 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSR 190 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSSHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECHHHHHT
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCcccccc
Confidence 68999999999654 47778889999999999887544444455555554433 45678999998532100
Q ss_pred HH--HHHHHHHhhCCc
Q 007325 225 FR--TRDMIVTNLGAK 238 (608)
Q Consensus 225 ~~--~~~~i~~~l~~~ 238 (608)
.. .++++.+.++..
T Consensus 191 ~~~~~~~~~~~~~~~~ 206 (260)
T 3q9l_A 191 GDMLSMEDVLEILRIK 206 (260)
T ss_dssp TSSCCHHHHHHHHCSE
T ss_pred ccccCHHHHHHHhCCc
Confidence 01 135666777654
No 257
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=97.07 E-value=0.0022 Score=64.05 Aligned_cols=66 Identities=15% Similarity=0.172 Sum_probs=51.7
Q ss_pred CeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEE-EEEeCCCcC
Q 007325 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRL 220 (608)
Q Consensus 154 ~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~i-vviNK~D~~ 220 (608)
.+.+.|||||+..... ........+|.+|+|+.+...-........+.+...+.+++ +|+|++|..
T Consensus 191 ~yD~VIIDtpp~~~~~-d~~~l~~~aD~vilVv~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 191 NYNFVIIDTPPVNTVT-DAQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKD 257 (271)
T ss_dssp HCSEEEEECCCTTTCS-HHHHHHHHHCEEEEEEETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEECC-
T ss_pred CCCEEEEeCCCCchHH-HHHHHHHHCCEEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCCcCC
Confidence 4789999999976543 33445567899999999987777777778888888888887 889999964
No 258
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=97.02 E-value=0.002 Score=65.31 Aligned_cols=66 Identities=12% Similarity=0.134 Sum_probs=51.9
Q ss_pred CeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEE-EEEeCCCcC
Q 007325 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRL 220 (608)
Q Consensus 154 ~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~i-vviNK~D~~ 220 (608)
.+.+.|||||+..... +.......+|.+|+|+.+...........++.+...+++++ +|+|++|..
T Consensus 213 ~yD~VIIDtpp~~~~~-d~~~l~~~ad~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 213 HYDLVIVDTPPMLAVS-DAAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKR 279 (299)
T ss_dssp HCSEEEEECCCTTTCT-HHHHHGGGCSEEEEEEETTTSCTTHHHHHHHHHHHTTCCCCCEEEEECCCC
T ss_pred CCCEEEEcCCCCchhH-HHHHHHHHCCEEEEEEcCCCChHHHHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 4679999999976543 33334567899999999987777778888888888888765 788999964
No 259
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.89 E-value=0.0028 Score=64.88 Aligned_cols=142 Identities=20% Similarity=0.167 Sum_probs=69.5
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhC-CcccceeeccCCccccchhhhhh--cceeEeecEEEEee-------------
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTG-RNYKIGEVHEGTATMDWMEQEQE--RGITITSAATTTYW------------- 152 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g-~~~~~g~~~~g~~~~d~~~~e~~--~giTi~~~~~~~~~------------- 152 (608)
+++.++|+|..|||||||++.|+.... .....-..+.|....|....... .-+.+...+.++..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~ 82 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLD 82 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHH
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHh
Confidence 578999999999999999999974321 00000011222222222111100 00001111111110
Q ss_pred ----c--CeeEEEEeCCCCCCchHHH--------HHHHHhcCeEEEEEcCCCCCchhHH-HHHHHHHhcCCCEEEEEeCC
Q 007325 153 ----N--KHRINIIDTPGHVDFTLEV--------ERALRVLDGAICLFDSVAGVEPQSE-TVWRQADKYGVPRICFVNKM 217 (608)
Q Consensus 153 ----~--~~~i~liDTPG~~df~~~~--------~~~l~~~D~~i~VvDa~~g~~~~t~-~~~~~~~~~~~p~ivviNK~ 217 (608)
. .....++++.|..+..... .......+.++-++|+.+....... ... + .+....-++++||.
T Consensus 83 ~~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~~ls~g-~-~Q~~~ad~ill~k~ 160 (318)
T 1nij_A 83 NLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIA-Q-SQVGYADRILLTKT 160 (318)
T ss_dssp HHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHH-H-HHHHTCSEEEEECT
T ss_pred HHhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHhhchHH-H-HHHHhCCEEEEECc
Confidence 1 1367899999987632211 1112245778889998753222111 111 1 11223446777999
Q ss_pred CcCCCcHHHHHHHHHH
Q 007325 218 DRLGANFFRTRDMIVT 233 (608)
Q Consensus 218 D~~~~~~~~~~~~i~~ 233 (608)
|+.... .++.+.+++
T Consensus 161 dl~de~-~~l~~~l~~ 175 (318)
T 1nij_A 161 DVAGEA-EKLHERLAR 175 (318)
T ss_dssp TTCSCT-HHHHHHHHH
T ss_pred ccCCHH-HHHHHHHHH
Confidence 998643 444455544
No 260
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.87 E-value=0.0065 Score=61.67 Aligned_cols=142 Identities=18% Similarity=0.165 Sum_probs=71.3
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeec-cCCccccchhhh------hhcceeEeecEEE-Ee---------
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVH-EGTATMDWMEQE------QERGITITSAATT-TY--------- 151 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~-~g~~~~d~~~~e------~~~giTi~~~~~~-~~--------- 151 (608)
....++++|+.|+|||||+..|...... ..|++. .+.........+ ...++.+-..... ..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~--~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l 176 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAV 176 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHH--cCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHH
Confidence 4468999999999999999999633110 112211 011000000000 1123332221111 10
Q ss_pred ----ecCeeEEEEeCCCCCCchHHHHH-------HHH-----hcCeEEEEEcCCCCCchhHHHHHHHHH-hcCCCEEEEE
Q 007325 152 ----WNKHRINIIDTPGHVDFTLEVER-------ALR-----VLDGAICLFDSVAGVEPQSETVWRQAD-KYGVPRICFV 214 (608)
Q Consensus 152 ----~~~~~i~liDTPG~~df~~~~~~-------~l~-----~~D~~i~VvDa~~g~~~~t~~~~~~~~-~~~~p~ivvi 214 (608)
..+....++||.|.......... ++. ..+-+++|+|++.|...... .+.+. ..++. ++++
T Consensus 177 ~~~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~~--~~~~~~~~g~t-~iii 253 (302)
T 3b9q_A 177 KRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ--AREFNEVVGIT-GLIL 253 (302)
T ss_dssp HHHHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHH--HHHHHHHTCCC-EEEE
T ss_pred HHHHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHHH--HHHHHHhcCCC-EEEE
Confidence 12345789999998664322211 111 13556899998887765543 23333 34544 6778
Q ss_pred eCCCcCCCcHHHHHHHHHHhhCC
Q 007325 215 NKMDRLGANFFRTRDMIVTNLGA 237 (608)
Q Consensus 215 NK~D~~~~~~~~~~~~i~~~l~~ 237 (608)
+|+|-. +.....+. +...++.
T Consensus 254 ThlD~~-~~~g~~l~-~~~~~~~ 274 (302)
T 3b9q_A 254 TKLDGS-ARGGCVVS-VVEELGI 274 (302)
T ss_dssp ECCSSC-SCTHHHHH-HHHHHCC
T ss_pred eCCCCC-CccChhee-hHHHHCC
Confidence 999864 33433333 3334443
No 261
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=96.82 E-value=0.0073 Score=59.73 Aligned_cols=85 Identities=12% Similarity=-0.021 Sum_probs=52.1
Q ss_pred cCeeEEEEeCCCCCCchHHH-HHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHh----cCCCE-EEEEeCCCcCCCcHHH
Q 007325 153 NKHRINIIDTPGHVDFTLEV-ERALRVLDGAICLFDSVAGVEPQSETVWRQADK----YGVPR-ICFVNKMDRLGANFFR 226 (608)
Q Consensus 153 ~~~~i~liDTPG~~df~~~~-~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~----~~~p~-ivviNK~D~~~~~~~~ 226 (608)
+.+.+.||||||........ ......+|.+|+|+.+...-......+++.+.. .++++ -+|+|+.+... ...
T Consensus 114 ~~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~~--~~~ 191 (269)
T 1cp2_A 114 DDLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVAN--EYE 191 (269)
T ss_dssp TTCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSSHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSC--CHH
T ss_pred cCCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCchhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCcch--hHH
Confidence 35889999999965321111 112246899999998864333333344444443 25665 57889987422 256
Q ss_pred HHHHHHHhhCCcc
Q 007325 227 TRDMIVTNLGAKP 239 (608)
Q Consensus 227 ~~~~i~~~l~~~~ 239 (608)
.++++.+.++...
T Consensus 192 ~~~~l~~~~~~~v 204 (269)
T 1cp2_A 192 LLDAFAKELGSQL 204 (269)
T ss_dssp HHHHHHHHHTCCE
T ss_pred HHHHHHHHcCCcc
Confidence 6778888887654
No 262
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=96.75 E-value=0.0045 Score=62.35 Aligned_cols=67 Identities=18% Similarity=0.227 Sum_probs=52.6
Q ss_pred CeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEE-EEEeCCCcCC
Q 007325 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLG 221 (608)
Q Consensus 154 ~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~i-vviNK~D~~~ 221 (608)
.+.+.|||||...... ........+|.+|+|+.+...-.......++.+...+.+++ +|+||+|...
T Consensus 201 ~yD~VIIDtpp~~~~~-da~~l~~~aD~vllVv~~~~~~~~~~~~~~~~l~~~g~~~~GvVlN~v~~~~ 268 (286)
T 3la6_A 201 NYDLVLIDTPPILAVT-DAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRRA 268 (286)
T ss_dssp HCSEEEEECCCTTTCT-HHHHHTTTCSEEEEEEETTTSBHHHHHHHHHHHHHTTCCCCEEEEEEECCCC
T ss_pred CCCEEEEcCCCCcchH-HHHHHHHHCCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEcCccccc
Confidence 4679999999976543 34445677899999999987767777788888888888764 7889999654
No 263
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=96.69 E-value=0.012 Score=58.93 Aligned_cols=90 Identities=10% Similarity=-0.065 Sum_probs=53.5
Q ss_pred cCeeEEEEeCCCCCCchHH-HHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHh----cCCCE-EEEEeCCCcCCCcHHH
Q 007325 153 NKHRINIIDTPGHVDFTLE-VERALRVLDGAICLFDSVAGVEPQSETVWRQADK----YGVPR-ICFVNKMDRLGANFFR 226 (608)
Q Consensus 153 ~~~~i~liDTPG~~df~~~-~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~----~~~p~-ivviNK~D~~~~~~~~ 226 (608)
..+.+.||||||....... .......+|.+|+|+.+...-......+++.+.. .++++ -+|+|+.+.. ....
T Consensus 117 ~~yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~--~~~~ 194 (289)
T 2afh_E 117 DDLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTD--REDE 194 (289)
T ss_dssp TTCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCT--THHH
T ss_pred cCCCEEEEeCCCccccchhhhhhhhhhCCEEEEEecCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCch--hHHH
Confidence 3688999999996432111 1112256899999998764333333333444332 35664 4788998732 2356
Q ss_pred HHHHHHHhhCCccEEEecc
Q 007325 227 TRDMIVTNLGAKPLVVQLP 245 (608)
Q Consensus 227 ~~~~i~~~l~~~~~~~~~p 245 (608)
.++.+.+.++.... ..+|
T Consensus 195 ~~~~l~~~~g~~~l-~~Ip 212 (289)
T 2afh_E 195 LIIALANKLGTQMI-HFVP 212 (289)
T ss_dssp HHHHHHHHHTSCEE-EEEC
T ss_pred HHHHHHHHcCcccc-ccCC
Confidence 67788888876543 3344
No 264
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=96.65 E-value=0.0035 Score=51.87 Aligned_cols=76 Identities=20% Similarity=0.221 Sum_probs=60.9
Q ss_pred EEEEEeeecCCCceEEEEEEecceeCCCCEEEeCCCCce---eecceEEEeecCceeecCeeecCCEEEE--cCCCcccc
Q 007325 392 GLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKK---ERIGRLLEMHANSREDVKVALAGDIIAL--AGLKDTIT 466 (608)
Q Consensus 392 ~~V~K~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~~---~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~~~~~ 466 (608)
|-|-.++..+..|.+|-++|.+|+++.+..+.+.+.+.. -++.+|..+ ..+|+++.+|.=|+| .+.++++.
T Consensus 9 AeVr~vF~isk~g~IAGc~V~~G~i~r~~~vRv~Rd~~vI~eG~i~SLkr~----KddV~EV~~G~ECGi~l~~~~dik~ 84 (99)
T 1d1n_A 9 AEVRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLKRY----KDDVREVAQGYECGLTIKNFNDIKE 84 (99)
T ss_dssp EEECCCCCCSSSCCCEEEEECSSBCCSSSEEEEECSSSEEEEEECSEEECS----SSCCSCCBTTCEEEEECTTCSSCSS
T ss_pred EEEEEEEEcCCceEEEEEEEEcCEEEcCCeEEEEECCEEEEEeEEhhhccc----ccccceECCCcEEEEEEcCcCCCCC
Confidence 345555566788999999999999999999999998854 356665533 478999999999998 45677999
Q ss_pred cceec
Q 007325 467 GETLC 471 (608)
Q Consensus 467 GdtL~ 471 (608)
||+|-
T Consensus 85 GD~Ie 89 (99)
T 1d1n_A 85 GDVIE 89 (99)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 99883
No 265
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.58 E-value=0.0055 Score=63.67 Aligned_cols=142 Identities=18% Similarity=0.161 Sum_probs=70.5
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhCCcccceeec-cCCccccchhhh------hhcceeEeecEEE-E----------
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVH-EGTATMDWMEQE------QERGITITSAATT-T---------- 150 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~-~g~~~~d~~~~e------~~~giTi~~~~~~-~---------- 150 (608)
....++++|+.|+|||||+..|...... ..|++. .+..+......+ ..+++.+-..... .
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~--~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l 233 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAV 233 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccc--cCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHH
Confidence 4468999999999999999999633110 112210 010000000000 1123322111100 0
Q ss_pred ---eecCeeEEEEeCCCCCCchHHHHH-------HHH-----hcCeEEEEEcCCCCCchhHHHHHHHHH-hcCCCEEEEE
Q 007325 151 ---YWNKHRINIIDTPGHVDFTLEVER-------ALR-----VLDGAICLFDSVAGVEPQSETVWRQAD-KYGVPRICFV 214 (608)
Q Consensus 151 ---~~~~~~i~liDTPG~~df~~~~~~-------~l~-----~~D~~i~VvDa~~g~~~~t~~~~~~~~-~~~~p~ivvi 214 (608)
...+....++||.|.......... ++. ..+-+++|+|++.|...... .+.+. ..++. ++++
T Consensus 234 ~~~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~~--~~~~~~~~g~t-~iii 310 (359)
T 2og2_A 234 KRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ--AREFNEVVGIT-GLIL 310 (359)
T ss_dssp HHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHHH--HHHHHHHTCCC-EEEE
T ss_pred HHHHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHHH--HHHHHHhcCCe-EEEE
Confidence 012445789999998664322211 111 13456899998877665443 22333 33443 6788
Q ss_pred eCCCcCCCcHHHHHHHHHHhhCC
Q 007325 215 NKMDRLGANFFRTRDMIVTNLGA 237 (608)
Q Consensus 215 NK~D~~~~~~~~~~~~i~~~l~~ 237 (608)
+|+|-. +..-..+ .+...++.
T Consensus 311 ThlD~~-~~gG~~l-si~~~~~~ 331 (359)
T 2og2_A 311 TKLDGS-ARGGCVV-SVVEELGI 331 (359)
T ss_dssp ESCTTC-SCTHHHH-HHHHHHCC
T ss_pred ecCccc-ccccHHH-HHHHHhCC
Confidence 999854 3333333 34444454
No 266
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=96.30 E-value=0.065 Score=55.36 Aligned_cols=68 Identities=19% Similarity=0.197 Sum_probs=49.7
Q ss_pred cCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEE-EEEeCCCcCCC----------cHHHHHHHHHHhhCCccEEEeccCC
Q 007325 179 LDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGA----------NFFRTRDMIVTNLGAKPLVVQLPVG 247 (608)
Q Consensus 179 ~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~i-vviNK~D~~~~----------~~~~~~~~i~~~l~~~~~~~~~pi~ 247 (608)
.+++++|.-+.......++..+..+.+.++|+. +|+|++..... .+...++++.+.++..+ ...+|+.
T Consensus 237 ~~~~vlV~~p~~~~~~e~~r~~~~l~~~~i~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~-l~~iPl~ 315 (349)
T 3ug7_A 237 RTAFRLVVIPEEMSILESERAMKALQKYGIPIDAVIVNQLIPEDVQCDFCRARRELQLKRLEMIKEKFGDKV-IAYVPLL 315 (349)
T ss_dssp TEEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHSTTSE-EEEEECC
T ss_pred CceEEEEECCCccHHHHHHHHHHHHHHCCCCeeEEEEcCCccccCCCchHHHHHHHHHHHHHHHHHHcCCCc-EEEecCC
Confidence 377889988776666778888999999999985 77899986532 14567788888887543 3455653
No 267
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.24 E-value=0.0027 Score=64.57 Aligned_cols=48 Identities=17% Similarity=0.249 Sum_probs=36.1
Q ss_pred HHHhcCeEEEEEcCCCCCchhH--HHHHHHHHhcCCCEEEEEeCCCcCCC
Q 007325 175 ALRVLDGAICLFDSVAGVEPQS--ETVWRQADKYGVPRICFVNKMDRLGA 222 (608)
Q Consensus 175 ~l~~~D~~i~VvDa~~g~~~~t--~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (608)
.+..+|.+++|+|+.++..... ...+..+...++|.++|+||+|+...
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~ 132 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIED 132 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCC
T ss_pred HHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCch
Confidence 5677899999999996654433 23334445689999999999998754
No 268
>2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=96.18 E-value=0.013 Score=50.29 Aligned_cols=74 Identities=16% Similarity=0.153 Sum_probs=57.3
Q ss_pred EEEeeecCCCce---EEEEEEecceeCCCCEEEeCCCCce---eecceEEEeecCceeecCeeecCCEEEE--cCCC-cc
Q 007325 394 AFKIMSDPFVGS---LTFVRVYAGTLSAGSYVLNANKGKK---ERIGRLLEMHANSREDVKVALAGDIIAL--AGLK-DT 464 (608)
Q Consensus 394 V~K~~~d~~~G~---la~~RV~sG~l~~g~~v~~~~~~~~---~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~-~~ 464 (608)
|-.++..+..|. +|-++|.+|+++.+..+.+.+.+.. -++.+|. +...+|+++.+|.=|+| .+.+ ++
T Consensus 15 Vr~vF~isk~g~~~~IAGC~V~~G~i~r~~~vRviRdg~vI~eG~i~SLk----rfKdDVkEV~~G~ECGi~l~~fniDi 90 (120)
T 2crv_A 15 ILATFTVTEGKKKIPVADCRVQKGQLERHKKFKLIRNGQVIWKGSLTSLK----HHKDDISVIKTGMDCGLSLDEEKVEF 90 (120)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEESCEETTSCEEEEETTEEEEEECCSEEE----SSSSCCSEECTTCEEEEECSCTTSCC
T ss_pred EeEEEEeCCCCceeEEeEEEEEcCEEEcCCeEEEEECCEEEEEeEehhhc----ccccccceecCCCEEEEEEccCCCCC
Confidence 334443445577 9999999999999999999988853 3555555 33578999999999998 5677 88
Q ss_pred cccceec
Q 007325 465 ITGETLC 471 (608)
Q Consensus 465 ~~GdtL~ 471 (608)
+.||+|-
T Consensus 91 k~GDiIE 97 (120)
T 2crv_A 91 KPGDQVI 97 (120)
T ss_dssp CTTEEEE
T ss_pred CCCCEEE
Confidence 9999983
No 269
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=96.05 E-value=0.04 Score=53.33 Aligned_cols=87 Identities=13% Similarity=0.027 Sum_probs=59.1
Q ss_pred cCeeEEEEeCCCCC-----CchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEE-EEEeCCCcCCCcHHH
Q 007325 153 NKHRINIIDTPGHV-----DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGANFFR 226 (608)
Q Consensus 153 ~~~~i~liDTPG~~-----df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~i-vviNK~D~~~~~~~~ 226 (608)
..+.+.+||+||.. +......-+.....-+|+|+|+..+-...+...++.+...++++. +|+|++|........
T Consensus 109 ~~~D~vlIEgaggl~~p~~~~~~~adla~~l~~pviLV~~~~~~~i~~~~~~~~~l~~~~~~i~GvIlN~~~~~~~~~~~ 188 (228)
T 3of5_A 109 QDLDILFIEGAGGLLTPYSDHTTQLDLIKALQIPVLLVSAIKVGCINHTLLTINELNRHNIKLAGWIANCNDSNIKYIDE 188 (228)
T ss_dssp SSCSEEEEEEEEETTCBSSSSCBHHHHHHHHTCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEEECCTTCSCHHH
T ss_pred ccCCEEEEECCCccccccccchhHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHhCCCcEEEEEEECcCCcchhhHH
Confidence 46789999998732 111112222222356889999987766666667777788899875 778999865444567
Q ss_pred HHHHHHHhhCCcc
Q 007325 227 TRDMIVTNLGAKP 239 (608)
Q Consensus 227 ~~~~i~~~l~~~~ 239 (608)
.++.+++.++...
T Consensus 189 ~~~~l~~~~g~pv 201 (228)
T 3of5_A 189 QINTIEELSGYKC 201 (228)
T ss_dssp HHHHHHHHHSCCC
T ss_pred HHHHHHHhhCCCE
Confidence 7888888887643
No 270
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.98 E-value=0.002 Score=65.53 Aligned_cols=22 Identities=9% Similarity=0.129 Sum_probs=20.2
Q ss_pred ceeEEEEcCCCCchHHHHHHHH
Q 007325 90 YRNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll 111 (608)
-..++|+|++|+|||||+|+|+
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~ 194 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAIS 194 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHhc
Confidence 3589999999999999999995
No 271
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=95.86 E-value=0.019 Score=60.44 Aligned_cols=90 Identities=17% Similarity=0.166 Sum_probs=56.1
Q ss_pred cCeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCc-------hhHHHHHHHHHhcC--CCE---EEEEeCCCcC
Q 007325 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVE-------PQSETVWRQADKYG--VPR---ICFVNKMDRL 220 (608)
Q Consensus 153 ~~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~-------~~t~~~~~~~~~~~--~p~---ivviNK~D~~ 220 (608)
+++.+.|||||.... ..+..++..+|.+|+|+.+..--. ......++.+...+ .++ +.++|+.+.
T Consensus 243 ~~yD~ViiD~pp~~~--~~~~~~l~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~giv~~~~~~~~- 319 (398)
T 3ez2_A 243 SDYDFILVDSGPHLD--AFLKNALASANILFTPLPPATVDFHSSLKYVARLPELVKLISDEGCECQLATNIGFMSKLSN- 319 (398)
T ss_dssp TTCSEEEEEECSCCS--HHHHHHHHHCSEEEEEECCSHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCCCEEEEEEEECS-
T ss_pred ccCCEEEEeCCCCcc--HHHHHHHHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEEEecCCC-
Confidence 468899999999775 456678889999999997753211 11222334444443 333 456777763
Q ss_pred CCcHHHHHHHHHHhhCCccEEEecc
Q 007325 221 GANFFRTRDMIVTNLGAKPLVVQLP 245 (608)
Q Consensus 221 ~~~~~~~~~~i~~~l~~~~~~~~~p 245 (608)
........+.+++.+|....+..+|
T Consensus 320 ~~~~~~~~~~l~~~~g~~vl~~~IP 344 (398)
T 3ez2_A 320 KADHKYCHSLAKEVFGGDMLDVFLP 344 (398)
T ss_dssp CHHHHHHHHHHHHHHGGGBCSCCEE
T ss_pred chhHHHHHHHHHHHhcccccceecc
Confidence 2224466788888888655434444
No 272
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=95.75 E-value=0.088 Score=53.71 Aligned_cols=67 Identities=15% Similarity=0.063 Sum_probs=48.3
Q ss_pred CeEEEEEcCCCCCchhHHHHHHHHHhcCCCEE-EEEeCCCcCCC----------cHHHHHHHHHHhhCCccEEEeccCC
Q 007325 180 DGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGA----------NFFRTRDMIVTNLGAKPLVVQLPVG 247 (608)
Q Consensus 180 D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~i-vviNK~D~~~~----------~~~~~~~~i~~~l~~~~~~~~~pi~ 247 (608)
+++++|+-+.......+...++.+...++|+. +|+|++..... .+.+.++++.+.++..+ ...+|+.
T Consensus 223 ~~~vlV~~p~~~~~~~~~~~~~~l~~~gi~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~-~~~iPl~ 300 (324)
T 3zq6_A 223 TSFKMVVIPEEMSIYESERAMKALEKYSIHADGVIVNQVLPEESDCEFCNARRKLQQERLKQIREKFSDKV-VAEVPLL 300 (324)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHTTTSE-EEEEECC
T ss_pred CeEEEEeCCcccHHHHHHHHHHHHHHCCCCccEEEEcCCccccCCChHHHHHHHHHHHHHHHHHHHcCCCc-EEEecCC
Confidence 58888888776666777888899999999985 77899976421 14567788888886433 3455653
No 273
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.74 E-value=0.046 Score=50.55 Aligned_cols=25 Identities=20% Similarity=0.151 Sum_probs=21.9
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHh
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFY 113 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~ 113 (608)
.++.++|+|.+|+|||||+++|+..
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3578999999999999999999743
No 274
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.50 E-value=0.014 Score=59.18 Aligned_cols=21 Identities=14% Similarity=0.075 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCchHHHHHHHH
Q 007325 91 RNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll 111 (608)
..++++|++|+|||||+|+|+
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999996
No 275
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.40 E-value=0.0069 Score=62.81 Aligned_cols=21 Identities=19% Similarity=0.197 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCchHHHHHHHH
Q 007325 91 RNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll 111 (608)
..++|+|++|+|||||+|.|+
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~ 236 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALL 236 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHh
Confidence 479999999999999999996
No 276
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.37 E-value=0.037 Score=57.33 Aligned_cols=46 Identities=13% Similarity=0.153 Sum_probs=30.0
Q ss_pred HHhcCeEEEEEcCCCCCch--hHHHHHHHHHhcCCCEEEEEeCCCcCCC
Q 007325 176 LRVLDGAICLFDSVAGVEP--QSETVWRQADKYGVPRICFVNKMDRLGA 222 (608)
Q Consensus 176 l~~~D~~i~VvDa~~g~~~--~t~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (608)
+..+|.+++| |+...... .....+..+...++|.++|+||+|+...
T Consensus 128 ~anvD~v~iv-~a~~P~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~ 175 (358)
T 2rcn_A 128 AANIDQIVIV-SAILPELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDD 175 (358)
T ss_dssp EECCCEEEEE-EESTTTCCHHHHHHHHHHHHHHTCEEEEEEECGGGCCH
T ss_pred HhcCCEEEEE-EeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCc
Confidence 4667998876 55543221 1222334445689999999999998753
No 277
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=95.36 E-value=0.039 Score=58.75 Aligned_cols=114 Identities=17% Similarity=0.099 Sum_probs=59.4
Q ss_pred CCCceeEEEEcCCCCchHHHHHHHHHhhCC---cccceee---ccCCccccchhhhhhcceeEeecEEEEee---cCeeE
Q 007325 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGR---NYKIGEV---HEGTATMDWMEQEQERGITITSAATTTYW---NKHRI 157 (608)
Q Consensus 87 ~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~---~~~~g~~---~~g~~~~d~~~~e~~~giTi~~~~~~~~~---~~~~i 157 (608)
...+..|+|+|..++|||+|+|.|+...+. ....|.. ..|=.+.. ...-..+||-+-.....+.. .+..+
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~-~~~~~TkGIWmw~~p~~~~~~~g~~~~v 142 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRG-GSERETTGIQIWSEIFLINKPDGKKVAV 142 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCC-SSSCCCCSEEEESSCEEEECTTSCEEEE
T ss_pred CCceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCC-CCCCcCceEEEecCcccccCCCCCeeEE
Confidence 456889999999999999999987643210 1011100 00000100 11223455544433333322 23569
Q ss_pred EEEeCCCCCCch-----HHHHHHH--HhcCeEEEEEcCCCCCchhHHHHHHHH
Q 007325 158 NIIDTPGHVDFT-----LEVERAL--RVLDGAICLFDSVAGVEPQSETVWRQA 203 (608)
Q Consensus 158 ~liDTPG~~df~-----~~~~~~l--~~~D~~i~VvDa~~g~~~~t~~~~~~~ 203 (608)
.|+||.|..+-. ...+-++ -.++..|+= ....+..+..+.+..+
T Consensus 143 lllDTEG~~d~~~~~~~d~~ifaLa~LLSS~~IyN--~~~~i~~~~L~~L~~~ 193 (457)
T 4ido_A 143 LLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYN--LSQNVQEDDLQHLQLF 193 (457)
T ss_dssp EEEEECCBTCTTCCHHHHHHHHHHHHHHCSEEEEE--EESSCCHHHHHHHHHH
T ss_pred EEEeccCCCCcccCccccHHHHHHHHHHhhheeec--ccccCCHHHHHHHHHH
Confidence 999999976632 1222223 245655553 3444566666555443
No 278
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=95.25 E-value=0.11 Score=49.34 Aligned_cols=95 Identities=11% Similarity=0.026 Sum_probs=61.1
Q ss_pred cCeeEEEEeCCCCCCc--h--HHHHHHHHhc-CeEEEEEcCCCCCchhHHHHHHHHHhcCCCEE-EEEeCCCcCCCcHHH
Q 007325 153 NKHRINIIDTPGHVDF--T--LEVERALRVL-DGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGANFFR 226 (608)
Q Consensus 153 ~~~~i~liDTPG~~df--~--~~~~~~l~~~-D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~i-vviNK~D~~~~~~~~ 226 (608)
.++.+.||||||...- . .......... +.+|+|+++..+-..+....++.+...+++++ +|+|++|.......+
T Consensus 107 ~~yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~~~~~~~~~~~i~~l~~~~~~i~gvvlN~~~~~~~~~~~ 186 (224)
T 1byi_A 107 QQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTPPGKRHAE 186 (224)
T ss_dssp TTCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEECCSSCCTTHHH
T ss_pred HhCCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCCCCcHHHHHHHHHHHHHCCCcEEEEEEeCCCCchhhHHH
Confidence 4688999999986531 1 0111122222 35788887765444555566667777788865 788999965444567
Q ss_pred HHHHHHHhhCCccEEEeccCCC
Q 007325 227 TRDMIVTNLGAKPLVVQLPVGA 248 (608)
Q Consensus 227 ~~~~i~~~l~~~~~~~~~pi~~ 248 (608)
.++.+++.++.... -.+|...
T Consensus 187 ~~~~l~~~~~~~vl-~~Ip~~~ 207 (224)
T 1byi_A 187 YMTTLTRMIPAPLL-GEIPWLA 207 (224)
T ss_dssp HHHHHHHHSSSCEE-EEECCCT
T ss_pred HHHHHHHHcCCCEE-EECCCCc
Confidence 78888888886554 3466544
No 279
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.95 E-value=0.022 Score=61.36 Aligned_cols=106 Identities=9% Similarity=0.084 Sum_probs=56.5
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCc--
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF-- 168 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df-- 168 (608)
.+|.++|.+|+||||+..+|....+........ ...|... +...|. .....++|+.|...|
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~----~~~d~~r-~~~~g~------------~~~~~ifd~~g~~~~r~ 102 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYLNFIGVPTRE----FNVGQYR-RDMVKT------------YKSFEFFLPDNEEGLKI 102 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE----EEHHHHH-HHHHCS------------CCCGGGGCTTCHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhccCCCceE----Eecchhh-hhhccC------------CCcccccCCCCHHHHHH
Confidence 589999999999999999996433210000000 0000000 000010 122346788886322
Q ss_pred hHHH--------HHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEE
Q 007325 169 TLEV--------ERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICF 213 (608)
Q Consensus 169 ~~~~--------~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivv 213 (608)
.... ..++...++.++|+|++......-..++..+...+.+++++
T Consensus 103 re~~~~~~l~~~~~~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l 155 (469)
T 1bif_A 103 RKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFV 155 (469)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEE
Confidence 2221 34445568889999999764433334445566666665544
No 280
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=94.93 E-value=0.22 Score=50.79 Aligned_cols=66 Identities=14% Similarity=0.038 Sum_probs=45.8
Q ss_pred CeEEEEEcCCCCCchhHHHHHHHHHhcCCCEE-EEEeCCCcCCC-----------cHHHHHHHHHHhhCCccEEEeccC
Q 007325 180 DGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGA-----------NFFRTRDMIVTNLGAKPLVVQLPV 246 (608)
Q Consensus 180 D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~i-vviNK~D~~~~-----------~~~~~~~~i~~~l~~~~~~~~~pi 246 (608)
+.+++|+.+.......+...++.+...++|+. +|+|++..+.. ...+.++++.+.++..++ ..+|.
T Consensus 222 t~~vlV~~pe~~~i~ea~~~~~~L~~~gi~v~gvVvN~~~~p~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~~-~~vP~ 299 (329)
T 2woo_A 222 TTFVCVCISEFLSLYETERMIQELTSYEIDTHNIVVNQLLLDPNTTCPQCMARRKMQQKYLAQIEELYEDFHV-VKVPQ 299 (329)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECCCSSCCCHHHHHHHHHHHHHHHHHHHHTTTSEE-EEEEC
T ss_pred eEEEEEeCCCcchHHHHHHHHHHHHHCCCCCCEEEEeCCcCcccccCHHHHHHHHHHHHHHHHHHHhcCCCCE-EEecC
Confidence 46888888776666677888899999999985 67899983221 134567778888764333 45554
No 281
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=94.72 E-value=0.31 Score=49.94 Aligned_cols=68 Identities=16% Similarity=0.100 Sum_probs=46.3
Q ss_pred CeEEEEEcCCCCCchhHHHHHHHHHhcCCCEE-EEEeCCCcCC---C---------cHHHHHHHHHHhhCCccEEEeccC
Q 007325 180 DGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLG---A---------NFFRTRDMIVTNLGAKPLVVQLPV 246 (608)
Q Consensus 180 D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~i-vviNK~D~~~---~---------~~~~~~~~i~~~l~~~~~~~~~pi 246 (608)
+.+++|.-+..-....+...+..+.+.++|+. +|+|++.-+. . ...+.++++.+.++...-...+|.
T Consensus 223 t~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~p~~~~~~~~~~~r~~~q~~~l~~i~~~~~~~~~~~~~pl 302 (334)
T 3iqw_A 223 TTFVCVCIPEFLSLYETERMIQELANYGIDTHCIVVNQLLFPKPGSDCEQCTARRRMQKKYLDQIEELYDEEFNVVKMPL 302 (334)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCCCTTCCCHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEC
T ss_pred eeEEEEECCCccHHHHHHHHHHHHHHCCCCccEEEECCCcCcccCCcCHHHHHHHHHHHHHHHHHHHhccCCCCEEEecC
Confidence 46888887766556677888899999999985 7789987321 1 135678888888864122334554
Q ss_pred C
Q 007325 247 G 247 (608)
Q Consensus 247 ~ 247 (608)
.
T Consensus 303 ~ 303 (334)
T 3iqw_A 303 L 303 (334)
T ss_dssp C
T ss_pred C
Confidence 3
No 282
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.71 E-value=0.066 Score=56.75 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=21.0
Q ss_pred CceeEEEEcCCCCchHHHHHHHHH
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLF 112 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~ 112 (608)
....|.++|.+||||||+..+|..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999963
No 283
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.70 E-value=0.018 Score=53.40 Aligned_cols=23 Identities=4% Similarity=0.224 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCchHHHHHHHHHh
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFY 113 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~ 113 (608)
+.++|+|++|||||||++.|...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 57999999999999999999743
No 284
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.63 E-value=0.016 Score=54.80 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCchHHHHHHHHH
Q 007325 91 RNIGIMAHIDAGKTTTTERVLF 112 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~ 112 (608)
+.++|+|++|||||||++.|+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999999974
No 285
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.60 E-value=0.02 Score=54.13 Aligned_cols=28 Identities=7% Similarity=0.197 Sum_probs=23.0
Q ss_pred CCCCceeEEEEcCCCCchHHHHHHHHHh
Q 007325 86 PLKDYRNIGIMAHIDAGKTTTTERVLFY 113 (608)
Q Consensus 86 ~~~~~~~i~ivG~~~~GKTTL~~~ll~~ 113 (608)
+..+.+.|+|+|++|+|||||+++|+..
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 3345578999999999999999999744
No 286
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.59 E-value=0.28 Score=45.17 Aligned_cols=24 Identities=21% Similarity=0.084 Sum_probs=21.1
Q ss_pred CceeEEEEcCCCCchHHHHHHHHH
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLF 112 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~ 112 (608)
+...|+++|.+|+||||++..|..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999999963
No 287
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=94.42 E-value=0.091 Score=56.93 Aligned_cols=79 Identities=15% Similarity=0.156 Sum_probs=60.6
Q ss_pred EEEEeeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCeeecCCEEEE--cCCCccccccee
Q 007325 393 LAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLKDTITGETL 470 (608)
Q Consensus 393 ~V~K~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~~~~~GdtL 470 (608)
.|-.++..+..|.++-++|..|+++.|..+.+.+.+...-.++|-.+. +...+|+++..|.=|+| .+..++..||.|
T Consensus 412 ~v~~~f~~~~~~~iaG~~v~~G~~~~~~~~~~~r~~~~i~~g~i~sl~-~~k~~v~e~~~g~ecgi~~~~~~~~~~gd~~ 490 (501)
T 1zo1_I 412 EVRDVFKSPKFGAIAGCMVTEGVVKRHNPIRVLRDNVVIYEGELESLR-RFKDDVNEVRNGMECGIGVKNYNDVRTGDVI 490 (501)
T ss_dssp EEEECSSCCCSSCEEEEEEEEEEEETTCEEECCSSSCCCEEEEBCCEE-ETTEEESEEETTCCEEEEBCCCTTCCTTCEE
T ss_pred EEEEEEecCCCCEEEEEEEEeCEEecCCeEEEEeCCeEEEEEEEehhc-ccCccccEECCCCEEEEEEcCcCCCCCCCEE
Confidence 344566666779999999999999999999999888644344444443 33578999999999998 456678999998
Q ss_pred cc
Q 007325 471 CD 472 (608)
Q Consensus 471 ~~ 472 (608)
-.
T Consensus 491 ~~ 492 (501)
T 1zo1_I 491 EV 492 (501)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 288
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.38 E-value=0.021 Score=53.01 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=20.3
Q ss_pred eEEEEcCCCCchHHHHHHHHHhh
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYT 114 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~ 114 (608)
+++|+|++|+|||||++.|....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999997443
No 289
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.30 E-value=0.02 Score=53.32 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCchHHHHHHHHH
Q 007325 91 RNIGIMAHIDAGKTTTTERVLF 112 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~ 112 (608)
+.++|+|++|||||||++.|+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999973
No 290
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=94.03 E-value=0.69 Score=45.24 Aligned_cols=82 Identities=11% Similarity=0.114 Sum_probs=50.9
Q ss_pred cCeeEEEEeCCCCC-----Cc-hHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEE-EEEeCCCcC-CCcH
Q 007325 153 NKHRINIIDTPGHV-----DF-TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRL-GANF 224 (608)
Q Consensus 153 ~~~~i~liDTPG~~-----df-~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~i-vviNK~D~~-~~~~ 224 (608)
.++.+.|||+||-. +. .....-+-....-+|+|+|+..+....+...++.+...++++. +|+||+... ....
T Consensus 125 ~~~D~vlIEGagGl~~pl~~~~~~~adla~~l~~pVILV~~~~~g~i~~~~lt~~~l~~~g~~i~GvIlN~v~~~~~~~~ 204 (251)
T 3fgn_A 125 RPGRLTLVEGAGGLLVELAEPGVTLRDVAVDVAAAALVVVTADLGTLNHTKLTLEALAAQQVSCAGLVIGSWPDPPGLVA 204 (251)
T ss_dssp CTTCEEEEECSSSTTCEEETTTEEHHHHHHHTTCEEEEEECSSTTHHHHHHHHHHHHHHTTCCEEEEEEEEECSSCCHHH
T ss_pred hcCCEEEEECCCCCcCCcCcccchHHHHHHHcCCCEEEEEcCCCccHHHHHHHHHHHHhCCCCEEEEEEECCCCchhhhh
Confidence 35789999999743 11 1112222233467899999987766666666777778888876 678998421 1122
Q ss_pred HHHHHHHHHh
Q 007325 225 FRTRDMIVTN 234 (608)
Q Consensus 225 ~~~~~~i~~~ 234 (608)
...++.|++.
T Consensus 205 ~~~~~~le~~ 214 (251)
T 3fgn_A 205 ASNRSALARI 214 (251)
T ss_dssp HHHHHHHHHH
T ss_pred hhHHHHHHHh
Confidence 3445666554
No 291
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=94.02 E-value=0.2 Score=54.71 Aligned_cols=79 Identities=15% Similarity=0.144 Sum_probs=60.6
Q ss_pred EEEEEEeeecC---CCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCeeecCCEEEE--cC-CCcc
Q 007325 391 AGLAFKIMSDP---FVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AG-LKDT 464 (608)
Q Consensus 391 ~~~V~K~~~d~---~~G~la~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~g-l~~~ 464 (608)
.+.|-+++.-+ ..|.+|-|+|..|+++++..+.+.+.+...-.++|-.+. +...+|+++..|.=|+| .+ ..++
T Consensus 449 ~a~v~~~f~~~~~~~~~~iaG~~v~~G~i~~~~~~r~~r~~~~i~~g~i~slk-~~k~~v~ev~~g~ecgi~~~~~~~~~ 527 (537)
T 3izy_P 449 EASILATFSITEGKKKVPVAGCRVQKGQIEKQKKFKLIRNGHVIWKGSLISLK-HHKDDTSVVKTGMDCGLSLDEEKIEF 527 (537)
T ss_dssp EEEEEEEESSCSSSCCSCEEEEEECSSEEESSSEEEEESSSSEEEEEECCCCC-CSSCCCSEEETTCEEEEESSSSCSSC
T ss_pred EEEEcCcEEECCCCccCcEEEEEEEeCeEeeCCeEEEecCCEEEEEEEEehhc-ccCcccceEcCCCEEEEEEcCcccCC
Confidence 44455555433 257899999999999999999999988755555555554 44588999999999999 45 6678
Q ss_pred ccccee
Q 007325 465 ITGETL 470 (608)
Q Consensus 465 ~~GdtL 470 (608)
+.||+|
T Consensus 528 ~~gd~i 533 (537)
T 3izy_P 528 KVGDAI 533 (537)
T ss_dssp SCCCEE
T ss_pred CCCCEE
Confidence 999987
No 292
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=93.97 E-value=0.19 Score=55.65 Aligned_cols=40 Identities=5% Similarity=-0.049 Sum_probs=31.5
Q ss_pred eEEEEEcCCCCCchhHHHHHHHHHhcCCCEE-EEEeCCCcC
Q 007325 181 GAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRL 220 (608)
Q Consensus 181 ~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~i-vviNK~D~~ 220 (608)
.+++|+.+.......+...++.+...+++.. +|+|+++..
T Consensus 200 ~vvlV~~~~~~~~~~~~~~~~~L~~~g~~~~gvVlN~v~~~ 240 (589)
T 1ihu_A 200 RLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGVLPK 240 (589)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHHHHHTCCCEEEEEEEECCG
T ss_pred EEEEEeCCCccHHHHHHHHHHHHHhCCCCCCEEEEcCCcCc
Confidence 6888888876666677788888888888764 779999854
No 293
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.92 E-value=0.034 Score=52.73 Aligned_cols=24 Identities=13% Similarity=0.198 Sum_probs=21.3
Q ss_pred CCceeEEEEcCCCCchHHHHHHHH
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll 111 (608)
.....|+|+|++|+|||||++.|.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~ 43 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLA 43 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 445689999999999999999996
No 294
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.85 E-value=0.034 Score=52.18 Aligned_cols=23 Identities=26% Similarity=0.130 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCchHHHHHHHHHh
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFY 113 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~ 113 (608)
..++|+|++|||||||++.|...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 47999999999999999999643
No 295
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.82 E-value=0.033 Score=51.26 Aligned_cols=24 Identities=21% Similarity=0.187 Sum_probs=21.1
Q ss_pred CceeEEEEcCCCCchHHHHHHHHH
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLF 112 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~ 112 (608)
+++.++|+|.+|+|||||+++|+.
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999973
No 296
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.79 E-value=0.033 Score=52.77 Aligned_cols=24 Identities=17% Similarity=0.029 Sum_probs=21.0
Q ss_pred CceeEEEEcCCCCchHHHHHHHHH
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLF 112 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~ 112 (608)
.-..++|+|++|||||||++.|..
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 345899999999999999999963
No 297
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.70 E-value=0.04 Score=51.06 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=20.1
Q ss_pred ceeEEEEcCCCCchHHHHHHHH
Q 007325 90 YRNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll 111 (608)
-..|+|+|.+|||||||++.|.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La 30 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALA 30 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999999995
No 298
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=93.66 E-value=0.89 Score=46.72 Aligned_cols=67 Identities=15% Similarity=0.050 Sum_probs=45.8
Q ss_pred CeEEEEEcCCCCCchhHHHHHHHHHhcCCCE-EEEEeCCCcCC-C----c--------HHHHHHHHHHhhCCccEEEecc
Q 007325 180 DGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLG-A----N--------FFRTRDMIVTNLGAKPLVVQLP 245 (608)
Q Consensus 180 D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~-ivviNK~D~~~-~----~--------~~~~~~~i~~~l~~~~~~~~~p 245 (608)
+.+++|+-+..-....+...+..+...++|+ -+|+|++.-.. . . ....++++.+.++. .....+|
T Consensus 232 t~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~~~~~~~~~~~~~~r~~~q~~~l~~i~~~~~~-~~~~~~p 310 (348)
T 3io3_A 232 TTFICVCISEFLSLYETERMIQELMSYNMDVNSIVVNQLLFAEGDDHSCKRCESRWKMQKKYLDQMGELYED-YHLVKMP 310 (348)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHHHHTTCCCCEEEEEEECCCC-----CHHHHHHHHHHHHHHHHHHHHTTT-SEEEEEE
T ss_pred eEEEEEecCCccHHHHHHHHHHHHHHCCCCccEEEEcCCccccccCccCHHHHHHHHHHHHHHHHHHHHccC-CCEEEec
Confidence 5788888777655667778889999999998 47889987543 1 1 24567788888753 2234455
Q ss_pred CC
Q 007325 246 VG 247 (608)
Q Consensus 246 i~ 247 (608)
+.
T Consensus 311 l~ 312 (348)
T 3io3_A 311 LL 312 (348)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 299
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.57 E-value=0.042 Score=49.77 Aligned_cols=25 Identities=12% Similarity=-0.176 Sum_probs=21.4
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhC
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g 115 (608)
+.|+|+|.+||||||+.+.|....+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999965444
No 300
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.56 E-value=0.042 Score=52.13 Aligned_cols=24 Identities=25% Similarity=0.058 Sum_probs=21.2
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHh
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFY 113 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~ 113 (608)
.+.|+|+|++|||||||++.|+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 458999999999999999999744
No 301
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.48 E-value=0.037 Score=53.05 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=20.6
Q ss_pred ceeEEEEcCCCCchHHHHHHHHH
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLF 112 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~ 112 (608)
-..++|+|++|||||||++.|+.
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45899999999999999999963
No 302
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.45 E-value=0.036 Score=50.88 Aligned_cols=22 Identities=14% Similarity=0.270 Sum_probs=19.3
Q ss_pred ceeEEEEcCCCCchHHHHHHHH
Q 007325 90 YRNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll 111 (608)
--.++++|++|||||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 3479999999999999999863
No 303
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.41 E-value=0.023 Score=52.43 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=19.7
Q ss_pred ceeEEEEcCCCCchHHHHHHHH
Q 007325 90 YRNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll 111 (608)
++.++|+|.+|+|||||++.|+
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~ 23 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMM 23 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3589999999999999999996
No 304
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.39 E-value=0.064 Score=49.01 Aligned_cols=26 Identities=15% Similarity=0.097 Sum_probs=22.1
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhC
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTG 115 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g 115 (608)
...|+|+|.+|+|||||++.|....|
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhC
Confidence 46899999999999999999965444
No 305
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.37 E-value=0.046 Score=49.79 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=21.3
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhC
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g 115 (608)
.+|+|+|.+|+|||||.+.|....+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999964433
No 306
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.31 E-value=0.045 Score=52.62 Aligned_cols=25 Identities=20% Similarity=0.066 Sum_probs=21.6
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHh
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFY 113 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~ 113 (608)
.-..++|+|++|||||||++.|+..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3468999999999999999999743
No 307
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=93.18 E-value=0.14 Score=53.86 Aligned_cols=91 Identities=19% Similarity=0.141 Sum_probs=55.8
Q ss_pred cCeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCc-------hhHHHHHHHHHhcCCC-----EEEEEeCCCcC
Q 007325 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVE-------PQSETVWRQADKYGVP-----RICFVNKMDRL 220 (608)
Q Consensus 153 ~~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~-------~~t~~~~~~~~~~~~p-----~ivviNK~D~~ 220 (608)
+.+.+.|||||.... ..+..++..+|.+|+|+.+..--. .....+++.+...+.+ ++.++|+.|.
T Consensus 246 ~~yD~VIID~pP~~~--~~~~~al~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~l~giv~vl~~~~~- 322 (403)
T 3ez9_A 246 DDYDFIFIDTGPHLD--PFLLNGLAASDLLLTPTPPAQVDFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMSKMTG- 322 (403)
T ss_dssp GGCSEEEEEECSSCS--HHHHHHHHHCSEEEEEECSSHHHHHHHHHHHHTHHHHHHHHHHTTCCCCCCEEEEEECC----
T ss_pred hcCCEEEEECCCCcc--HHHHHHHHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEeccCC-
Confidence 457899999999765 567778889999999997753111 1222344445554433 3568899883
Q ss_pred CCcHHHHHHHHHHhhCCccEEEeccC
Q 007325 221 GANFFRTRDMIVTNLGAKPLVVQLPV 246 (608)
Q Consensus 221 ~~~~~~~~~~i~~~l~~~~~~~~~pi 246 (608)
...-....+.+++.+|.......+|.
T Consensus 323 ~~~~~~~~~~~~~~~g~~vl~~~IP~ 348 (403)
T 3ez9_A 323 KRDHETSHSLAREVYASNILDSSLPR 348 (403)
T ss_dssp CHHHHHHHHHHHHHHTTSEECCC---
T ss_pred chhHHHHHHHHHHHhhHhhhceeCCc
Confidence 22344567888888987655445553
No 308
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.17 E-value=0.045 Score=49.47 Aligned_cols=24 Identities=21% Similarity=0.170 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhC
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g 115 (608)
+.|+|+|.+||||||+.+.| ...|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g 25 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERG 25 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCC
Confidence 47999999999999999999 5544
No 309
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.12 E-value=0.049 Score=49.51 Aligned_cols=25 Identities=28% Similarity=0.258 Sum_probs=21.5
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHH
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLF 112 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~ 112 (608)
..-..++++|+.|||||||++.|..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3445899999999999999999963
No 310
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.12 E-value=0.048 Score=51.51 Aligned_cols=22 Identities=32% Similarity=0.312 Sum_probs=20.0
Q ss_pred ceeEEEEcCCCCchHHHHHHHH
Q 007325 90 YRNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll 111 (608)
...|+|+|++|||||||++.|.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~ 27 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALA 27 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999996
No 311
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.04 E-value=0.062 Score=50.47 Aligned_cols=26 Identities=35% Similarity=0.353 Sum_probs=22.2
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhC
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTG 115 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g 115 (608)
...|+|+|.+|||||||++.|....|
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g 54 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETG 54 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 35899999999999999999965444
No 312
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=93.00 E-value=0.34 Score=45.55 Aligned_cols=23 Identities=17% Similarity=0.034 Sum_probs=20.6
Q ss_pred ceeEEEEcCCCCchHHHHHHHHH
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLF 112 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~ 112 (608)
-..++|+|++|+|||||+..|+.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999975
No 313
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.87 E-value=0.059 Score=50.49 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCchHHHHHHHHH
Q 007325 91 RNIGIMAHIDAGKTTTTERVLF 112 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~ 112 (608)
..|+|+|++|||||||++.|..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999963
No 314
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.84 E-value=0.052 Score=50.79 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCchHHHHHHHHHh
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFY 113 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~ 113 (608)
|-|+|+|++|+|||||+++|+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 45889999999999999999854
No 315
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=92.83 E-value=0.068 Score=50.17 Aligned_cols=27 Identities=22% Similarity=0.098 Sum_probs=22.9
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhC
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTG 115 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g 115 (608)
+..+|+|+|.+|+||||+...|....+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 346899999999999999999975444
No 316
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.80 E-value=0.052 Score=52.79 Aligned_cols=22 Identities=23% Similarity=0.199 Sum_probs=19.8
Q ss_pred ceeEEEEcCCCCchHHHHHHHH
Q 007325 90 YRNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll 111 (608)
--.++|+|+.|||||||++.|.
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~ 52 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIG 52 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHh
Confidence 3589999999999999999993
No 317
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.76 E-value=0.056 Score=50.96 Aligned_cols=26 Identities=19% Similarity=0.125 Sum_probs=22.3
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhh
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYT 114 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~ 114 (608)
..+.|+|+|.+|||||||++.|....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34689999999999999999997543
No 318
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=92.71 E-value=0.13 Score=52.37 Aligned_cols=23 Identities=13% Similarity=0.003 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCchHHHHHHHHHh
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFY 113 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~ 113 (608)
+.+.|.|++|+|||||+.++...
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 46789999999999999999754
No 319
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.68 E-value=0.091 Score=49.24 Aligned_cols=29 Identities=21% Similarity=0.143 Sum_probs=24.1
Q ss_pred CCCceeEEEEcCCCCchHHHHHHHHHhhC
Q 007325 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTG 115 (608)
Q Consensus 87 ~~~~~~i~ivG~~~~GKTTL~~~ll~~~g 115 (608)
..+.+.|+|+|.+|+||||+.+.|....|
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 44567899999999999999999975544
No 320
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=92.66 E-value=0.71 Score=47.83 Aligned_cols=36 Identities=19% Similarity=0.127 Sum_probs=29.0
Q ss_pred cCeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCC
Q 007325 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVA 190 (608)
Q Consensus 153 ~~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~ 190 (608)
..+.+.|||||.. ....+...+..+|.+|+|+.+..
T Consensus 258 ~~yD~VIID~p~~--~~~~~~~~l~~aD~vivv~~~~~ 293 (373)
T 3fkq_A 258 DNYDEIIVDLPFS--LEIEKLKLLSKAWRIIVVNDGSQ 293 (373)
T ss_dssp SCCSEEEEECCCC--CCHHHHHHHTTCSEEEEEECCCH
T ss_pred CCCCEEEEeCCCC--CCHHHHHHHHHCCEEEEEecCCc
Confidence 4678999999954 34577788999999999987764
No 321
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.65 E-value=0.06 Score=49.92 Aligned_cols=21 Identities=29% Similarity=0.303 Sum_probs=19.4
Q ss_pred eeEEEEcCCCCchHHHHHHHH
Q 007325 91 RNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll 111 (608)
..++|+|++|||||||++.|.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~ 23 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLA 23 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHh
Confidence 468999999999999999996
No 322
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=92.63 E-value=0.68 Score=46.16 Aligned_cols=24 Identities=13% Similarity=0.106 Sum_probs=20.9
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHh
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFY 113 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~ 113 (608)
..++.|+|++|+|||||+.++...
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHH
Confidence 348999999999999999999643
No 323
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.63 E-value=0.33 Score=47.34 Aligned_cols=27 Identities=26% Similarity=0.002 Sum_probs=22.7
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhh
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYT 114 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~ 114 (608)
.....|+++|.+||||||+...|....
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 345689999999999999999997543
No 324
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.63 E-value=0.078 Score=49.75 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=22.2
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhC
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTG 115 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g 115 (608)
.+.|+|+|.+|||||||++.|....|
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999975544
No 325
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.62 E-value=0.057 Score=52.07 Aligned_cols=21 Identities=19% Similarity=0.159 Sum_probs=19.3
Q ss_pred eeEEEEcCCCCchHHHHHHHH
Q 007325 91 RNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll 111 (608)
-.++|+|+.|||||||++.|.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~ 51 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILG 51 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 479999999999999999983
No 326
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.57 E-value=0.075 Score=52.49 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=19.9
Q ss_pred ceeEEEEcCCCCchHHHHHHHH
Q 007325 90 YRNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll 111 (608)
--.++|+|+.|+|||||++.|.
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~ 67 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLY 67 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3489999999999999999994
No 327
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=92.41 E-value=0.081 Score=48.73 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=22.3
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhC
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTG 115 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g 115 (608)
.++|+++|.+|+||||+...|....|
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999975444
No 328
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.32 E-value=0.07 Score=52.06 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCchHHHHHHHH
Q 007325 91 RNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll 111 (608)
-.++|+|+.|||||||++.|.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~ 45 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIA 45 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHh
Confidence 489999999999999999994
No 329
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.26 E-value=0.081 Score=51.44 Aligned_cols=26 Identities=23% Similarity=0.207 Sum_probs=22.3
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhCC
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTGR 116 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g~ 116 (608)
..|+|+|.+|||||||++.|....|.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~ 53 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGL 53 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 58999999999999999999754454
No 330
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.24 E-value=0.066 Score=51.00 Aligned_cols=21 Identities=14% Similarity=-0.042 Sum_probs=19.4
Q ss_pred eeEEEEcCCCCchHHHHHHHH
Q 007325 91 RNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll 111 (608)
-.++|+|+.|+|||||++.|.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~ 43 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKA 43 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 379999999999999999996
No 331
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.22 E-value=0.072 Score=52.67 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=20.2
Q ss_pred ceeEEEEcCCCCchHHHHHHHH
Q 007325 90 YRNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll 111 (608)
--.++|+|++|+|||||++.|+
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~ 46 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMI 46 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHH
Confidence 4589999999999999999996
No 332
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=92.19 E-value=0.077 Score=48.41 Aligned_cols=22 Identities=18% Similarity=0.176 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCchHHHHHHHHH
Q 007325 91 RNIGIMAHIDAGKTTTTERVLF 112 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~ 112 (608)
..|+|+|.+|+||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999964
No 333
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=92.18 E-value=1 Score=43.82 Aligned_cols=83 Identities=10% Similarity=-0.094 Sum_probs=50.9
Q ss_pred cCeeEEEEeCCCCCC-----chHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCCcHHHH
Q 007325 153 NKHRINIIDTPGHVD-----FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRT 227 (608)
Q Consensus 153 ~~~~i~liDTPG~~d-----f~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~ 227 (608)
..+.+.|||.+|-.- ......-+-....-+|+|+|+..+.-..+...++.+...+++.=+|+|+++-...-.+.+
T Consensus 130 ~~~D~vlIEGagGl~~pl~~~~~~adlA~~l~~pVILV~~~~lg~i~~~~lt~~~l~~~g~~~GvIlN~v~~~~~~~~~~ 209 (242)
T 3qxc_A 130 KTYDLVIVEGAGGLCVPITLEENMLDFALKLKAKMLLISHDNLGLINDCLLNDFLLKSHQLDYKIAINLKGNNTAFHSIS 209 (242)
T ss_dssp GTCSEEEEECCSCTTCBSSSSCBHHHHHHHHTCEEEEEECCSTTHHHHHHHHHHHHHTSSSCEEEEECCCTTCCHHHHHT
T ss_pred hcCCEEEEECCCCccccccccchHHHHHHHcCCCEEEEEcCCCcHHHHHHHHHHHHHhCCCCEEEEEeCCCCccchhhhh
Confidence 457899999997431 111111122222448889999887666666777777788888667899998554223333
Q ss_pred HHHHHHhh
Q 007325 228 RDMIVTNL 235 (608)
Q Consensus 228 ~~~i~~~l 235 (608)
.-.+.+.+
T Consensus 210 ~p~le~~~ 217 (242)
T 3qxc_A 210 LPYIELFN 217 (242)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 44444443
No 334
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.18 E-value=0.085 Score=50.29 Aligned_cols=25 Identities=24% Similarity=0.041 Sum_probs=21.4
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhC
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g 115 (608)
..|+|+|.+|+||||+++.|....|
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999964433
No 335
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.11 E-value=0.074 Score=49.89 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCchHHHHHHHHH
Q 007325 91 RNIGIMAHIDAGKTTTTERVLF 112 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~ 112 (608)
.+|+|+|.+|+||||+.+.|..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999964
No 336
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=92.05 E-value=0.087 Score=49.46 Aligned_cols=23 Identities=17% Similarity=-0.029 Sum_probs=20.6
Q ss_pred ceeEEEEcCCCCchHHHHHHHHH
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLF 112 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~ 112 (608)
...|+|+|.+|+|||||.+.|..
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999963
No 337
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.03 E-value=0.082 Score=48.76 Aligned_cols=23 Identities=17% Similarity=0.020 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCchHHHHHHHHHh
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFY 113 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~ 113 (608)
+.|+|+|.+|+||||+++.|...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999643
No 338
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.02 E-value=0.074 Score=52.59 Aligned_cols=22 Identities=23% Similarity=0.194 Sum_probs=19.8
Q ss_pred ceeEEEEcCCCCchHHHHHHHH
Q 007325 90 YRNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll 111 (608)
--.++|+|+.|||||||++.|.
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~ 53 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCIN 53 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3589999999999999999993
No 339
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.02 E-value=0.095 Score=53.25 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=21.8
Q ss_pred CCCceeEEEEcCCCCchHHHHHHHH
Q 007325 87 LKDYRNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 87 ~~~~~~i~ivG~~~~GKTTL~~~ll 111 (608)
......|+|+|++|||||||++.|.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~ 111 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQ 111 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHH
Confidence 3455789999999999999999995
No 340
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.01 E-value=0.074 Score=51.73 Aligned_cols=22 Identities=14% Similarity=0.330 Sum_probs=19.8
Q ss_pred ceeEEEEcCCCCchHHHHHHHH
Q 007325 90 YRNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll 111 (608)
--.++|+|+.|+|||||++.|.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~ 52 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALL 52 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3489999999999999999994
No 341
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=91.99 E-value=0.14 Score=48.83 Aligned_cols=25 Identities=12% Similarity=0.135 Sum_probs=21.6
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHh
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFY 113 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~ 113 (608)
..+++.|.|++|+|||||+.++...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3478999999999999999999643
No 342
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.98 E-value=0.076 Score=51.83 Aligned_cols=22 Identities=18% Similarity=0.102 Sum_probs=19.9
Q ss_pred ceeEEEEcCCCCchHHHHHHHH
Q 007325 90 YRNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll 111 (608)
--.++|+|+.|+|||||++.|.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~ 49 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLE 49 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3589999999999999999994
No 343
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=91.98 E-value=0.096 Score=49.34 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=21.1
Q ss_pred CCceeEEEEcCCCCchHHHHHHHH
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll 111 (608)
.....|+|+|.+|+|||||++.|.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~ 42 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQ 42 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 344689999999999999999996
No 344
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=91.96 E-value=0.095 Score=48.49 Aligned_cols=25 Identities=28% Similarity=0.159 Sum_probs=21.6
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHh
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFY 113 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~ 113 (608)
+.++|+|+|.+|+||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999644
No 345
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.96 E-value=0.077 Score=51.30 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=19.8
Q ss_pred ceeEEEEcCCCCchHHHHHHHH
Q 007325 90 YRNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll 111 (608)
-..++|+|+.|+|||||++.|.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~ 55 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIM 55 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3489999999999999999994
No 346
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.96 E-value=0.075 Score=52.36 Aligned_cols=22 Identities=18% Similarity=0.084 Sum_probs=19.8
Q ss_pred ceeEEEEcCCCCchHHHHHHHH
Q 007325 90 YRNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll 111 (608)
--.++|+|+.|||||||++.|.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~ 54 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVIT 54 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3589999999999999999993
No 347
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.94 E-value=0.077 Score=52.62 Aligned_cols=22 Identities=23% Similarity=0.203 Sum_probs=19.9
Q ss_pred ceeEEEEcCCCCchHHHHHHHH
Q 007325 90 YRNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll 111 (608)
--.++|+|+.|||||||++.|.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~ 58 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLT 58 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHh
Confidence 3589999999999999999994
No 348
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=91.94 E-value=0.082 Score=49.72 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCchHHHHHHHH
Q 007325 91 RNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll 111 (608)
..|+|+|.+||||||+.+.|.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La 23 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFT 23 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999995
No 349
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.92 E-value=0.081 Score=51.90 Aligned_cols=22 Identities=23% Similarity=0.146 Sum_probs=19.9
Q ss_pred ceeEEEEcCCCCchHHHHHHHH
Q 007325 90 YRNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll 111 (608)
--.++|+|+.|+|||||++.|.
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~ 50 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILA 50 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3489999999999999999995
No 350
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.92 E-value=0.077 Score=52.88 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=19.4
Q ss_pred eeEEEEcCCCCchHHHHHHHH
Q 007325 91 RNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll 111 (608)
-.++|+|+.|||||||++.|.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~ 55 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFN 55 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999994
No 351
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.85 E-value=0.081 Score=49.56 Aligned_cols=21 Identities=19% Similarity=0.135 Sum_probs=19.2
Q ss_pred eEEEEcCCCCchHHHHHHHHH
Q 007325 92 NIGIMAHIDAGKTTTTERVLF 112 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~ 112 (608)
.++|+|+.|+|||||++.|..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 689999999999999999963
No 352
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.85 E-value=0.057 Score=51.97 Aligned_cols=23 Identities=22% Similarity=0.187 Sum_probs=16.5
Q ss_pred CceeEEEEcCCCCchHHHHHHHH
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll 111 (608)
....++|+|++|||||||++.|.
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 34589999999999999999996
No 353
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.85 E-value=0.079 Score=51.89 Aligned_cols=21 Identities=33% Similarity=0.483 Sum_probs=19.4
Q ss_pred eeEEEEcCCCCchHHHHHHHH
Q 007325 91 RNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll 111 (608)
-.++|+|+.|+|||||++.|.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~ 56 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQ 56 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 489999999999999999994
No 354
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=91.76 E-value=0.1 Score=47.56 Aligned_cols=25 Identities=20% Similarity=0.056 Sum_probs=21.4
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhC
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g 115 (608)
+.|.++|.+|+||||+.+.|....+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4799999999999999999975433
No 355
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.76 E-value=0.097 Score=52.93 Aligned_cols=25 Identities=8% Similarity=0.226 Sum_probs=21.6
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHH
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLF 112 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~ 112 (608)
..-..++|+|++|+|||||++.|+.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhh
Confidence 3446899999999999999999963
No 356
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=91.75 E-value=0.12 Score=47.50 Aligned_cols=27 Identities=26% Similarity=0.203 Sum_probs=22.6
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhC
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTG 115 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g 115 (608)
+.++|+|+|.+|+||||+...|....+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999964444
No 357
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.75 E-value=0.08 Score=50.67 Aligned_cols=21 Identities=19% Similarity=0.183 Sum_probs=19.3
Q ss_pred eeEEEEcCCCCchHHHHHHHH
Q 007325 91 RNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll 111 (608)
-.++|+|+.|+|||||++.|.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~ 56 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIS 56 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 479999999999999999994
No 358
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=91.74 E-value=0.098 Score=48.78 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=21.7
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHh
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFY 113 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~ 113 (608)
+...|+|+|.+||||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4468999999999999999999643
No 359
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.73 E-value=0.11 Score=48.52 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=20.9
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhC
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTG 115 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g 115 (608)
.|+|+|.+||||||+++.|....+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999975444
No 360
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.73 E-value=0.083 Score=51.46 Aligned_cols=22 Identities=27% Similarity=0.288 Sum_probs=19.7
Q ss_pred ceeEEEEcCCCCchHHHHHHHH
Q 007325 90 YRNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll 111 (608)
--.++|+|+.|+|||||++.|.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~ 53 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIA 53 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3479999999999999999994
No 361
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=91.71 E-value=0.1 Score=47.75 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=21.5
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhC
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g 115 (608)
++|+|+|.+|+||||+...|....+
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4799999999999999999965444
No 362
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.68 E-value=0.085 Score=52.20 Aligned_cols=23 Identities=13% Similarity=0.124 Sum_probs=20.2
Q ss_pred CceeEEEEcCCCCchHHHHHHHH
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll 111 (608)
.--.++|+|+.|+|||||++.|.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~ 71 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLN 71 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHT
T ss_pred CCCEEEEEcCCCCcHHHHHHHHH
Confidence 34589999999999999999993
No 363
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.61 E-value=0.093 Score=50.66 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=19.9
Q ss_pred ceeEEEEcCCCCchHHHHHHHH
Q 007325 90 YRNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll 111 (608)
--.++|+|++|||||||+..|+
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHH
Confidence 3589999999999999999986
No 364
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=91.60 E-value=0.085 Score=53.26 Aligned_cols=21 Identities=10% Similarity=0.104 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCchHHHHHHHH
Q 007325 91 RNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll 111 (608)
..++++|++|+|||||+|.|.
T Consensus 170 eiv~l~G~sG~GKSTll~~l~ 190 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAIN 190 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHS
T ss_pred CeEEEECCCCCcHHHHHHHhc
Confidence 578999999999999999995
No 365
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=91.59 E-value=0.46 Score=48.16 Aligned_cols=87 Identities=16% Similarity=0.164 Sum_probs=47.1
Q ss_pred cCeeEEEEeCCCCCCchHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHh----cCCCEE-EEEeCCCcCCCcHHHH
Q 007325 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK----YGVPRI-CFVNKMDRLGANFFRT 227 (608)
Q Consensus 153 ~~~~i~liDTPG~~df~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~----~~~p~i-vviNK~D~~~~~~~~~ 227 (608)
+.+.+.++|+||-...... ..++..+|.+|+|+.+..--......+++.+.. .+.++. +++|+.+.. ..
T Consensus 162 d~~D~v~iD~~~~~~~~~~-~~al~aAd~viIvt~~e~~Al~~~~~l~~~i~~~~~~~~~~l~GiI~n~~~~~-----~~ 235 (314)
T 3fwy_A 162 DDTDVVIFDVLGDVVCGGF-AAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT-----DE 235 (314)
T ss_dssp SSCSEEEEEECCSSCCGGG-GGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC-----HH
T ss_pred hcCceEeeccCCcchhhhh-HhHHhhCCeEEEEeCCcHHHHHHHHHHHHHHHHHhccCCCceEEEEEcCCCch-----hH
Confidence 3578999999976543221 245778999999987652111122223333332 233332 567875532 23
Q ss_pred HHHHHHhhCCccEEEeccC
Q 007325 228 RDMIVTNLGAKPLVVQLPV 246 (608)
Q Consensus 228 ~~~i~~~l~~~~~~~~~pi 246 (608)
++++.+.++...+ -.+|.
T Consensus 236 v~~~a~~~~~~~l-g~IP~ 253 (314)
T 3fwy_A 236 VDRFCKETNFRRL-AHMPD 253 (314)
T ss_dssp HHHHHHHHTCCEE-EEECC
T ss_pred HHHHHHHhCCeEE-EEecC
Confidence 4566666765433 34453
No 366
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.55 E-value=0.095 Score=51.97 Aligned_cols=22 Identities=23% Similarity=0.199 Sum_probs=19.9
Q ss_pred ceeEEEEcCCCCchHHHHHHHH
Q 007325 90 YRNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll 111 (608)
--.++|+|+.|+|||||++.|.
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~ 67 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLA 67 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3589999999999999999995
No 367
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=91.51 E-value=0.13 Score=47.49 Aligned_cols=26 Identities=23% Similarity=0.101 Sum_probs=21.9
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhC
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTG 115 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g 115 (608)
...|+|+|.+|+||||+.+.|....+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35899999999999999999965443
No 368
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.47 E-value=0.093 Score=51.69 Aligned_cols=22 Identities=32% Similarity=0.314 Sum_probs=19.8
Q ss_pred ceeEEEEcCCCCchHHHHHHHH
Q 007325 90 YRNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll 111 (608)
--.++|+|+.|||||||++.|.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~ 62 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIIS 62 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 3489999999999999999994
No 369
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=91.42 E-value=0.85 Score=45.71 Aligned_cols=23 Identities=17% Similarity=0.172 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCchHHHHHHHHHh
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFY 113 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~ 113 (608)
+++.|.|++|+|||+|+.++...
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~ 61 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999643
No 370
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.42 E-value=0.095 Score=51.39 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=19.3
Q ss_pred eeEEEEcCCCCchHHHHHHHH
Q 007325 91 RNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll 111 (608)
-.++|+|+.|+|||||++.|.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~ 47 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMA 47 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 479999999999999999994
No 371
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.41 E-value=0.16 Score=52.50 Aligned_cols=22 Identities=23% Similarity=0.111 Sum_probs=19.8
Q ss_pred ceeEEEEcCCCCchHHHHHHHH
Q 007325 90 YRNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll 111 (608)
--.++|+|++|||||||++.|.
T Consensus 30 Ge~~~llGpsGsGKSTLLr~ia 51 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLA 51 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCchHHHHHHHHh
Confidence 3479999999999999999994
No 372
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=91.41 E-value=0.089 Score=48.34 Aligned_cols=24 Identities=17% Similarity=0.252 Sum_probs=21.2
Q ss_pred CCceeEEEEcCCCCchHHHHHHHH
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll 111 (608)
.....++++|++|+|||||+.++.
T Consensus 36 ~~g~~~~l~G~~G~GKTtL~~~i~ 59 (180)
T 3ec2_A 36 EEGKGLTFVGSPGVGKTHLAVATL 59 (180)
T ss_dssp GGCCEEEECCSSSSSHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHH
Confidence 335689999999999999999996
No 373
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=91.39 E-value=0.71 Score=46.77 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=21.0
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHh
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFY 113 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~ 113 (608)
.++|.|.|.+|+|||+|+.++...
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 468999999999999999999643
No 374
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.38 E-value=0.12 Score=48.62 Aligned_cols=23 Identities=17% Similarity=0.073 Sum_probs=20.7
Q ss_pred ceeEEEEcCCCCchHHHHHHHHH
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLF 112 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~ 112 (608)
...|+|+|.+|+||||+.+.|..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999964
No 375
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=91.35 E-value=0.18 Score=52.79 Aligned_cols=31 Identities=23% Similarity=0.354 Sum_probs=23.9
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceee
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEV 123 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~ 123 (608)
--.++|+|++|+|||||++.|. |.....|.+
T Consensus 47 Ge~~~llGpsGsGKSTLLr~ia---Gl~~~~G~I 77 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFL---RLLNTEGEI 77 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHH---TCSEEEEEE
T ss_pred CCEEEEECCCCChHHHHHHHHh---CCCCCCeEE
Confidence 3589999999999999999994 544334554
No 376
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=91.32 E-value=0.13 Score=48.40 Aligned_cols=26 Identities=23% Similarity=0.179 Sum_probs=22.1
Q ss_pred CCCceeEEEEcCCCCchHHHHHHHHH
Q 007325 87 LKDYRNIGIMAHIDAGKTTTTERVLF 112 (608)
Q Consensus 87 ~~~~~~i~ivG~~~~GKTTL~~~ll~ 112 (608)
..+...|+|+|.+|+|||||++.|..
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34456899999999999999999963
No 377
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=91.31 E-value=0.14 Score=47.50 Aligned_cols=26 Identities=23% Similarity=0.242 Sum_probs=22.2
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhC
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTG 115 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g 115 (608)
.+.|+|+|.+|+||||+.+.|....+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999975444
No 378
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.28 E-value=0.097 Score=52.00 Aligned_cols=22 Identities=14% Similarity=0.169 Sum_probs=19.8
Q ss_pred ceeEEEEcCCCCchHHHHHHHH
Q 007325 90 YRNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll 111 (608)
--.++|+|+.|+|||||++.|.
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~ 66 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQ 66 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3489999999999999999994
No 379
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.27 E-value=0.14 Score=49.85 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=22.1
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhC
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTG 115 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g 115 (608)
....|+|+|..|||||||++.|....|
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345899999999999999999964333
No 380
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=91.25 E-value=0.14 Score=47.10 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=21.5
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhC
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g 115 (608)
..|+++|.+||||||+.+.|....|
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999964444
No 381
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.23 E-value=0.1 Score=52.16 Aligned_cols=22 Identities=23% Similarity=0.012 Sum_probs=19.7
Q ss_pred ceeEEEEcCCCCchHHHHHHHH
Q 007325 90 YRNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll 111 (608)
--.++|+|+.|+|||||++.|.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~ 68 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILN 68 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHh
Confidence 3479999999999999999993
No 382
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=91.21 E-value=0.47 Score=41.87 Aligned_cols=21 Identities=10% Similarity=0.097 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCchHHHHHHHH
Q 007325 91 RNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll 111 (608)
.+|.|.|.+|+|||+|+.++.
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~ 45 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLH 45 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999995
No 383
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=91.20 E-value=0.19 Score=52.34 Aligned_cols=22 Identities=23% Similarity=0.179 Sum_probs=19.8
Q ss_pred ceeEEEEcCCCCchHHHHHHHH
Q 007325 90 YRNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll 111 (608)
--.++|+|++|||||||++.|.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~ia 50 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIA 50 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCcHHHHHHHHHH
Confidence 3479999999999999999994
No 384
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.18 E-value=0.1 Score=51.71 Aligned_cols=22 Identities=18% Similarity=0.160 Sum_probs=19.7
Q ss_pred ceeEEEEcCCCCchHHHHHHHH
Q 007325 90 YRNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll 111 (608)
--.++|+|+.|+|||||++.|.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~ 54 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVA 54 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHh
Confidence 3489999999999999999983
No 385
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=91.17 E-value=0.11 Score=49.49 Aligned_cols=22 Identities=14% Similarity=0.209 Sum_probs=20.2
Q ss_pred ceeEEEEcCCCCchHHHHHHHH
Q 007325 90 YRNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll 111 (608)
--.++|+|++|+|||||+..|+
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~ 46 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLA 46 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3589999999999999999996
No 386
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.11 E-value=0.13 Score=48.67 Aligned_cols=24 Identities=33% Similarity=0.338 Sum_probs=20.9
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhC
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTG 115 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g 115 (608)
+|+|+|.+||||||+.+.|....|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999965544
No 387
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.10 E-value=0.17 Score=46.62 Aligned_cols=26 Identities=15% Similarity=0.140 Sum_probs=22.1
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhC
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTG 115 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g 115 (608)
.+.|+|+|.+|+||||+...|....+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999965444
No 388
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.08 E-value=0.14 Score=50.04 Aligned_cols=26 Identities=19% Similarity=0.024 Sum_probs=22.1
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhC
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTG 115 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g 115 (608)
...|+|+|++|||||||++.|....|
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45899999999999999999964434
No 389
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.07 E-value=0.82 Score=49.63 Aligned_cols=26 Identities=27% Similarity=0.262 Sum_probs=22.5
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhC
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTG 115 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g 115 (608)
.+.+.|.|++|+|||||+.++....+
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~ 102 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELG 102 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999975543
No 390
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.06 E-value=0.11 Score=51.17 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=19.3
Q ss_pred eeEEEEcCCCCchHHHHHHHH
Q 007325 91 RNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll 111 (608)
-.++|+|+.|+|||||++.|.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~ 52 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLL 52 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 479999999999999999994
No 391
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=91.04 E-value=0.11 Score=47.72 Aligned_cols=23 Identities=13% Similarity=0.148 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCchHHHHHHHHHh
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFY 113 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~ 113 (608)
..|+|.|.+||||||+.+.|...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999643
No 392
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=91.03 E-value=0.13 Score=51.55 Aligned_cols=24 Identities=21% Similarity=0.054 Sum_probs=21.3
Q ss_pred CCceeEEEEcCCCCchHHHHHHHH
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll 111 (608)
.+...|+|+|.+|+|||||++.|.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 445689999999999999999986
No 393
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.00 E-value=0.19 Score=48.22 Aligned_cols=31 Identities=19% Similarity=0.145 Sum_probs=25.2
Q ss_pred CCCCceeEEEEcCCCCchHHHHHHHHHhhCC
Q 007325 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGR 116 (608)
Q Consensus 86 ~~~~~~~i~ivG~~~~GKTTL~~~ll~~~g~ 116 (608)
...+.+.|.|+|+|||||+|+...|....|.
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~ 55 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKFHF 55 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHHCC
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHHCC
Confidence 3455678999999999999999999766553
No 394
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=90.98 E-value=0.099 Score=54.26 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCchHHHHHHHH
Q 007325 91 RNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll 111 (608)
.+++|+|++|+|||||++.|+
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~ 196 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALM 196 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999996
No 395
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=90.97 E-value=0.2 Score=50.97 Aligned_cols=26 Identities=31% Similarity=0.271 Sum_probs=22.0
Q ss_pred CCCceeEEEEcCCCCchHHHHHHHHH
Q 007325 87 LKDYRNIGIMAHIDAGKTTTTERVLF 112 (608)
Q Consensus 87 ~~~~~~i~ivG~~~~GKTTL~~~ll~ 112 (608)
......|+|+|.+|||||||++.|..
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34456899999999999999999853
No 396
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=90.92 E-value=0.15 Score=46.99 Aligned_cols=25 Identities=24% Similarity=0.234 Sum_probs=21.6
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhC
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g 115 (608)
..|+|+|.+||||||+...|....+
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999975444
No 397
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.84 E-value=0.14 Score=48.51 Aligned_cols=24 Identities=38% Similarity=0.430 Sum_probs=20.8
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhC
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTG 115 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g 115 (608)
+|+|+|.+||||||+.+.|....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999965444
No 398
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=90.80 E-value=0.11 Score=49.96 Aligned_cols=25 Identities=24% Similarity=0.119 Sum_probs=21.7
Q ss_pred CCCceeEEEEcCCCCchHHHHHHHH
Q 007325 87 LKDYRNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 87 ~~~~~~i~ivG~~~~GKTTL~~~ll 111 (608)
..+...|+|+|..|||||||++.|.
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~ 41 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFE 41 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHH
Confidence 3455789999999999999999985
No 399
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=90.79 E-value=0.11 Score=46.53 Aligned_cols=24 Identities=17% Similarity=0.058 Sum_probs=21.1
Q ss_pred CceeEEEEcCCCCchHHHHHHHHH
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLF 112 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~ 112 (608)
.-..++|+|++|+|||||+.++..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999963
No 400
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.72 E-value=0.15 Score=51.67 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=21.2
Q ss_pred CCceeEEEEcCCCCchHHHHHHHH
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll 111 (608)
.+...|+|+|.+|||||||++.|.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~ 101 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQ 101 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 445689999999999999999996
No 401
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=90.71 E-value=0.14 Score=47.14 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=21.5
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhC
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g 115 (608)
++|+|+|.+|+||||+...|....|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4699999999999999999975444
No 402
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=90.71 E-value=0.39 Score=44.69 Aligned_cols=23 Identities=17% Similarity=0.078 Sum_probs=20.2
Q ss_pred ceeEEEEcCCCCchHHHHHHHHH
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLF 112 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~ 112 (608)
.+++.|.|.+|+|||+|+.++..
T Consensus 38 ~~~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 38 IPHLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999999963
No 403
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=90.61 E-value=0.17 Score=48.20 Aligned_cols=26 Identities=15% Similarity=0.032 Sum_probs=22.2
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhC
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTG 115 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g 115 (608)
..+|+|+|.+|+||||+...|....+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35899999999999999999975544
No 404
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=90.56 E-value=0.092 Score=53.19 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=20.3
Q ss_pred CceeEEEEcCCCCchHHHHHHHH
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll 111 (608)
.--.++|+|++|+|||||++.|+
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~ 101 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLF 101 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHT
T ss_pred CCCEEEEECCCCchHHHHHHHHH
Confidence 34589999999999999999984
No 405
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=90.52 E-value=0.16 Score=48.68 Aligned_cols=26 Identities=23% Similarity=0.164 Sum_probs=22.1
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhC
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTG 115 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g 115 (608)
...|+|+|.+||||||+.+.|....+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 36899999999999999999975444
No 406
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=90.51 E-value=0.17 Score=49.62 Aligned_cols=25 Identities=24% Similarity=0.076 Sum_probs=21.7
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhC
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g 115 (608)
+.|+|+|.+|+|||||..+|....+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999975544
No 407
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=90.49 E-value=0.61 Score=47.82 Aligned_cols=25 Identities=24% Similarity=0.191 Sum_probs=21.7
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHH
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLF 112 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~ 112 (608)
...+++.|.|++|+|||||+.++..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999963
No 408
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=90.44 E-value=0.16 Score=46.62 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=20.6
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhC
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTG 115 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g 115 (608)
..+|+|+.|+|||||+++|....+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 678999999999999999975433
No 409
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=90.43 E-value=0.18 Score=47.15 Aligned_cols=25 Identities=12% Similarity=0.045 Sum_probs=21.6
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhC
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g 115 (608)
..|+|.|.+|+||||+++.|....+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 5799999999999999999975443
No 410
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=90.43 E-value=0.16 Score=47.03 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=21.9
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhC
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g 115 (608)
+.|+|+|.+|+||||+...|....+
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999975544
No 411
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=90.42 E-value=0.2 Score=46.78 Aligned_cols=26 Identities=19% Similarity=0.162 Sum_probs=22.0
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhC
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTG 115 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g 115 (608)
...|+|+|.+|+||||+.+.|....+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999975444
No 412
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.41 E-value=0.15 Score=47.52 Aligned_cols=22 Identities=23% Similarity=0.110 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCchHHHHHHHHH
Q 007325 91 RNIGIMAHIDAGKTTTTERVLF 112 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~ 112 (608)
..|+|+|.+||||||+++.|..
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999963
No 413
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=90.39 E-value=0.13 Score=53.12 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCchHHHHHHHH
Q 007325 91 RNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll 111 (608)
-.++|+|++|+|||||+++|+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~ 144 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAML 144 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 389999999999999999996
No 414
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=90.38 E-value=0.14 Score=50.74 Aligned_cols=21 Identities=24% Similarity=0.278 Sum_probs=19.3
Q ss_pred eeEEEEcCCCCchHHHHHHHH
Q 007325 91 RNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll 111 (608)
-.++|+|+.|+|||||++.|.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~ 51 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAIS 51 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHh
Confidence 479999999999999999994
No 415
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=90.31 E-value=0.14 Score=53.05 Aligned_cols=23 Identities=26% Similarity=0.245 Sum_probs=20.3
Q ss_pred CceeEEEEcCCCCchHHHHHHHH
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll 111 (608)
.--.++|+|++|||||||++.|.
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~ 75 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVN 75 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEEcCCCchHHHHHHHHh
Confidence 34589999999999999999994
No 416
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=90.27 E-value=0.17 Score=48.18 Aligned_cols=26 Identities=19% Similarity=0.022 Sum_probs=22.2
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhC
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTG 115 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g 115 (608)
...|+|+|.+||||||+.+.|....+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999975544
No 417
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=90.22 E-value=0.18 Score=45.54 Aligned_cols=26 Identities=8% Similarity=0.263 Sum_probs=21.8
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhC
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTG 115 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g 115 (608)
..+|+|+|.+||||||+...|....|
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46999999999999999999965444
No 418
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=90.18 E-value=0.17 Score=45.79 Aligned_cols=25 Identities=20% Similarity=0.145 Sum_probs=21.5
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhC
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g 115 (608)
+.|+|+|.+|+||||+...|....|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999965444
No 419
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=90.14 E-value=0.19 Score=48.98 Aligned_cols=27 Identities=19% Similarity=0.342 Sum_probs=22.5
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhC
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTG 115 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g 115 (608)
+...|+|.|.+||||||+.+.|....|
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 446899999999999999999964434
No 420
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=90.13 E-value=0.16 Score=52.39 Aligned_cols=22 Identities=32% Similarity=0.351 Sum_probs=19.9
Q ss_pred ceeEEEEcCCCCchHHHHHHHH
Q 007325 90 YRNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll 111 (608)
--.++|+|++|||||||++.|.
T Consensus 31 Ge~~~llGpnGsGKSTLLr~ia 52 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIA 52 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHh
Confidence 3589999999999999999994
No 421
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=90.07 E-value=0.11 Score=53.09 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCchHHHHHHHH
Q 007325 91 RNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll 111 (608)
.+++|+|++|+|||||++.|+
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~ 192 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIM 192 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGG
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 489999999999999999995
No 422
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=90.07 E-value=0.15 Score=46.68 Aligned_cols=25 Identities=24% Similarity=0.073 Sum_probs=17.5
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhC
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g 115 (608)
..|+|.|.+||||||+.+.|....+
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHST
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5899999999999999999964444
No 423
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=90.04 E-value=0.14 Score=51.33 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=20.2
Q ss_pred CceeEEEEcCCCCchHHHHHHHH
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll 111 (608)
.-..++|+|+.|+|||||++.|.
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~ 85 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIM 85 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHT
T ss_pred CCCEEEEECCCCCcHHHHHHHHh
Confidence 34589999999999999999994
No 424
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=89.98 E-value=0.22 Score=47.93 Aligned_cols=43 Identities=14% Similarity=-0.019 Sum_probs=30.7
Q ss_pred CeEEEEEcCCCCCchhHHHHHHHHHhcCCCEEEEEeCCCcCCC
Q 007325 180 DGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (608)
Q Consensus 180 D~~i~VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (608)
+.-+++||-.+-+.....+.+..+...++|++++.-..|-.+.
T Consensus 89 ~~dvViIDEaQ~l~~~~ve~l~~L~~~gi~Vil~Gl~~df~~~ 131 (223)
T 2b8t_A 89 ETKVIGIDEVQFFDDRICEVANILAENGFVVIISGLDKNFKGE 131 (223)
T ss_dssp TCCEEEECSGGGSCTHHHHHHHHHHHTTCEEEEECCSBCTTSS
T ss_pred CCCEEEEecCccCcHHHHHHHHHHHhCCCeEEEEeccccccCC
Confidence 4567888988766555555666666679999999888886543
No 425
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=89.93 E-value=0.08 Score=49.93 Aligned_cols=22 Identities=32% Similarity=0.155 Sum_probs=19.6
Q ss_pred eEEEEcCCCCchHHHHHHHHHh
Q 007325 92 NIGIMAHIDAGKTTTTERVLFY 113 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~ 113 (608)
.|+|+|.+||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999643
No 426
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=89.92 E-value=0.15 Score=53.08 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=20.7
Q ss_pred CceeEEEEcCCCCchHHHHHHHH
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll 111 (608)
....++|+|++|+|||||++.|+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~ 157 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMI 157 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 34589999999999999999997
No 427
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=89.89 E-value=0.2 Score=45.08 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=20.8
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhC
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTG 115 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g 115 (608)
+|+|.|.+||||||+.+.|....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999965444
No 428
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=89.88 E-value=0.17 Score=47.54 Aligned_cols=23 Identities=22% Similarity=0.130 Sum_probs=20.6
Q ss_pred ceeEEEEcCCCCchHHHHHHHHH
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLF 112 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~ 112 (608)
...|+|+|.+|+||||+++.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999963
No 429
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=89.87 E-value=1.9 Score=45.10 Aligned_cols=22 Identities=9% Similarity=0.131 Sum_probs=19.7
Q ss_pred ceeEEEEcCCCCchHHHHHHHH
Q 007325 90 YRNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll 111 (608)
-..++|+|++|+|||||+..|+
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHH
Confidence 3589999999999999999875
No 430
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=89.87 E-value=0.62 Score=47.69 Aligned_cols=23 Identities=22% Similarity=0.144 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCchHHHHHHHHHh
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFY 113 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~ 113 (608)
--+.|.|.+|+|||||+-.+...
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~ 69 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLS 69 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHH
Confidence 47889999999999999998644
No 431
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=89.75 E-value=0.89 Score=44.53 Aligned_cols=26 Identities=12% Similarity=0.083 Sum_probs=22.4
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHh
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFY 113 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~ 113 (608)
...+++.|.|++|+|||+|+.++...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 44579999999999999999999643
No 432
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=89.65 E-value=0.2 Score=47.52 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCchHHHHHHHH
Q 007325 91 RNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll 111 (608)
..|+|+|.+||||||+.+.|.
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~ 25 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFA 25 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999995
No 433
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=89.64 E-value=0.25 Score=48.03 Aligned_cols=27 Identities=11% Similarity=-0.058 Sum_probs=22.9
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhC
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTG 115 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g 115 (608)
+...|+|+|.+||||||+...|....+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999975544
No 434
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=89.63 E-value=0.17 Score=46.57 Aligned_cols=21 Identities=24% Similarity=0.215 Sum_probs=19.2
Q ss_pred eEEEEcCCCCchHHHHHHHHH
Q 007325 92 NIGIMAHIDAGKTTTTERVLF 112 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~ 112 (608)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999963
No 435
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=89.57 E-value=0.17 Score=52.24 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=19.8
Q ss_pred ceeEEEEcCCCCchHHHHHHHH
Q 007325 90 YRNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll 111 (608)
--.++|+|++|||||||++.|.
T Consensus 41 Ge~~~llGpnGsGKSTLLr~ia 62 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIA 62 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHh
Confidence 3479999999999999999994
No 436
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=89.56 E-value=0.19 Score=49.37 Aligned_cols=24 Identities=17% Similarity=0.054 Sum_probs=21.2
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHh
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFY 113 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~ 113 (608)
...|+|+|.+||||||+...|...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999643
No 437
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=89.55 E-value=1.1 Score=49.67 Aligned_cols=80 Identities=23% Similarity=0.352 Sum_probs=59.0
Q ss_pred CCeEEEEE--EeeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeecCceeecCeeecCCEEEE--cCC--
Q 007325 388 EPFAGLAF--KIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGL-- 461 (608)
Q Consensus 388 ~p~~~~V~--K~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl-- 461 (608)
+|..+.|. .++..+. |.++-++|..|+++.|..|.. +.+. ..++|-.+. +...+|++|.+|.=|+| .+.
T Consensus 462 ~~~~~~i~~~~~f~~~~-~~i~g~~v~~G~~~~~~~~~~-~~~~--~~g~i~sl~-~~k~~v~~~~~g~e~gi~~~~~~~ 536 (594)
T 1g7s_A 462 KPASIRLIPKLVFRQSK-PAIGGVEVLTGVIRQGYPLMN-DDGE--TVGTVESMQ-DKGENLKSASRGQKVAMAIKDAVY 536 (594)
T ss_dssp CCEEEEEEEEEEEECSS-SEEEEEEEEEEEEETTCEEEC-TTSC--EEEEEEEEE-ETTEEESEEETTCCEEEEEETCCB
T ss_pred eeEEEEEecceEEcCCC-CeEEEEEEecCEEecCCeEEe-cCCc--EEEEEehhc-ccCccccccCCCCEEEEEEeCccc
Confidence 45555433 2444555 899999999999999999998 5553 455665555 34578999999999998 343
Q ss_pred -Ccccccceecc
Q 007325 462 -KDTITGETLCD 472 (608)
Q Consensus 462 -~~~~~GdtL~~ 472 (608)
.++..||.|..
T Consensus 537 ~~~~~~~d~~~~ 548 (594)
T 1g7s_A 537 GKTIHEGDTLYV 548 (594)
T ss_dssp TTTBCTTCEEEE
T ss_pred CCCCCCCCEEEE
Confidence 56888999864
No 438
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=89.52 E-value=0.17 Score=52.46 Aligned_cols=23 Identities=13% Similarity=0.310 Sum_probs=20.8
Q ss_pred ceeEEEEcCCCCchHHHHHHHHH
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLF 112 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~ 112 (608)
...++|+|++|+|||||++.|..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999963
No 439
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=89.50 E-value=0.21 Score=45.78 Aligned_cols=23 Identities=22% Similarity=0.056 Sum_probs=20.3
Q ss_pred ceeEEEEcCCCCchHHHHHHHHH
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLF 112 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~ 112 (608)
-..|+++|.+|+||||+.+.|..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999963
No 440
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=89.48 E-value=0.22 Score=49.75 Aligned_cols=27 Identities=15% Similarity=0.091 Sum_probs=22.6
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHhh
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFYT 114 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~~ 114 (608)
.+...|.|+|.+|||||||+.+|....
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345689999999999999999997543
No 441
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=89.47 E-value=0.14 Score=55.76 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCchHHHHHHHH
Q 007325 91 RNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll 111 (608)
.+++|+|++|||||||+++|+
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~ 281 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIM 281 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHG
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999996
No 442
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=89.40 E-value=0.18 Score=52.19 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=19.8
Q ss_pred ceeEEEEcCCCCchHHHHHHHH
Q 007325 90 YRNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll 111 (608)
--.++|+|++|||||||++.|.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~ia 50 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLA 50 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEEcCCCchHHHHHHHHH
Confidence 3479999999999999999994
No 443
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=89.28 E-value=0.19 Score=52.10 Aligned_cols=22 Identities=14% Similarity=0.167 Sum_probs=19.8
Q ss_pred ceeEEEEcCCCCchHHHHHHHH
Q 007325 90 YRNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll 111 (608)
--.++|+|++|||||||++.|.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~ia 50 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIA 50 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCchHHHHHHHHh
Confidence 3479999999999999999994
No 444
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=89.28 E-value=0.19 Score=52.41 Aligned_cols=22 Identities=14% Similarity=0.089 Sum_probs=19.8
Q ss_pred ceeEEEEcCCCCchHHHHHHHH
Q 007325 90 YRNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll 111 (608)
--.++|+|++|||||||++.|.
T Consensus 29 Ge~~~llGpsGsGKSTLLr~ia 50 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIA 50 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEcCCCchHHHHHHHHH
Confidence 3479999999999999999994
No 445
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=89.16 E-value=0.23 Score=46.98 Aligned_cols=24 Identities=25% Similarity=0.236 Sum_probs=20.9
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhC
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTG 115 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g 115 (608)
+|+|+|.+||||||+.+.|....|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999975444
No 446
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=89.09 E-value=0.2 Score=52.14 Aligned_cols=22 Identities=23% Similarity=0.202 Sum_probs=19.9
Q ss_pred ceeEEEEcCCCCchHHHHHHHH
Q 007325 90 YRNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll 111 (608)
--.++|+|++|||||||++.|.
T Consensus 37 Ge~~~llGpnGsGKSTLLr~ia 58 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIA 58 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHH
Confidence 4589999999999999999994
No 447
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=89.08 E-value=0.22 Score=44.51 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=19.6
Q ss_pred eEEEEcCCCCchHHHHHHHHHh
Q 007325 92 NIGIMAHIDAGKTTTTERVLFY 113 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~ 113 (608)
..+|+|+.|+|||||+++|.+.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999999999754
No 448
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=89.02 E-value=0.22 Score=48.81 Aligned_cols=26 Identities=23% Similarity=0.264 Sum_probs=22.1
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhC
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTG 115 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g 115 (608)
..+|+|+|.+|+||||+.+.|....|
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35899999999999999999965444
No 449
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=88.98 E-value=0.96 Score=46.63 Aligned_cols=25 Identities=24% Similarity=0.214 Sum_probs=21.4
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHh
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFY 113 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~ 113 (608)
.-..+.|+|++|+|||||+.+++..
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999743
No 450
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=88.96 E-value=0.19 Score=46.45 Aligned_cols=21 Identities=19% Similarity=0.085 Sum_probs=19.1
Q ss_pred eEEEEcCCCCchHHHHHHHHH
Q 007325 92 NIGIMAHIDAGKTTTTERVLF 112 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~ 112 (608)
.|+|.|.+||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999963
No 451
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=88.93 E-value=1.6 Score=42.85 Aligned_cols=25 Identities=20% Similarity=0.098 Sum_probs=21.6
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHh
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFY 113 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~ 113 (608)
..+.+.|.|++|+|||+|+.++...
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3468999999999999999999644
No 452
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=88.91 E-value=0.88 Score=45.29 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=21.6
Q ss_pred CCceeEEEEcCCCCchHHHHHHHHHh
Q 007325 88 KDYRNIGIMAHIDAGKTTTTERVLFY 113 (608)
Q Consensus 88 ~~~~~i~ivG~~~~GKTTL~~~ll~~ 113 (608)
....++.|.|++|+|||+|+.++...
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34468999999999999999988633
No 453
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=88.88 E-value=1 Score=44.59 Aligned_cols=24 Identities=17% Similarity=0.109 Sum_probs=21.2
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHh
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFY 113 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~ 113 (608)
.+.+.|.|++|+|||||+.++...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 468999999999999999999643
No 454
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=88.86 E-value=0.2 Score=52.93 Aligned_cols=24 Identities=25% Similarity=0.047 Sum_probs=20.9
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHh
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFY 113 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~ 113 (608)
.-.++|+|++|+|||||+++|+..
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHhh
Confidence 347999999999999999999743
No 455
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=88.77 E-value=0.66 Score=47.75 Aligned_cols=24 Identities=29% Similarity=0.228 Sum_probs=20.7
Q ss_pred CceeEEEEcCCCCchHHHHHHHHH
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLF 112 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~ 112 (608)
+-..+.|.|++|+|||||+..++.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~ 83 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVA 83 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999874
No 456
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=88.77 E-value=0.28 Score=47.09 Aligned_cols=26 Identities=15% Similarity=0.013 Sum_probs=22.4
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhC
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTG 115 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g 115 (608)
..+|+|+|.+|+||||+...|....+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999975544
No 457
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=88.74 E-value=3.6 Score=39.53 Aligned_cols=25 Identities=16% Similarity=0.044 Sum_probs=21.6
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHh
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFY 113 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~ 113 (608)
..+.|.|.|++|+|||+|+.++...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999644
No 458
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=88.63 E-value=0.8 Score=47.24 Aligned_cols=24 Identities=33% Similarity=0.261 Sum_probs=20.9
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHh
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFY 113 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~ 113 (608)
-..+.|.|.+|+|||||+-.++..
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999998743
No 459
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=88.62 E-value=0.26 Score=46.76 Aligned_cols=25 Identities=24% Similarity=0.230 Sum_probs=21.7
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhC
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g 115 (608)
..|+|+|.+|+||||+.+.|....+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999975544
No 460
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=88.61 E-value=0.27 Score=46.59 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=21.6
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCC
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTGR 116 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g~ 116 (608)
+|.|+|+|||||+|+...|....|.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~ 26 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGF 26 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Confidence 5889999999999999999866553
No 461
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=88.47 E-value=0.18 Score=52.05 Aligned_cols=21 Identities=29% Similarity=0.249 Sum_probs=19.4
Q ss_pred eeEEEEcCCCCchHHHHHHHH
Q 007325 91 RNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll 111 (608)
-.++|+|++|||||||++.|.
T Consensus 27 e~~~llGpnGsGKSTLLr~ia 47 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIA 47 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHH
Confidence 479999999999999999994
No 462
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=88.42 E-value=2.7 Score=42.49 Aligned_cols=21 Identities=5% Similarity=-0.141 Sum_probs=18.4
Q ss_pred eEEEEcCCCCchHHHHHHHHH
Q 007325 92 NIGIMAHIDAGKTTTTERVLF 112 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~ 112 (608)
.+-|.|++++|||||+-+++.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~ 50 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVS 50 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999888863
No 463
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=88.39 E-value=0.27 Score=48.97 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=20.9
Q ss_pred CceeEEEEcCCCCchHHHHHHHH
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll 111 (608)
+...|+|+|.+||||||+.+.|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999996
No 464
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=88.33 E-value=0.32 Score=44.09 Aligned_cols=24 Identities=21% Similarity=0.155 Sum_probs=21.0
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHh
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFY 113 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~ 113 (608)
.+++.|.|.+|+|||||+.++...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999643
No 465
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=88.32 E-value=0.26 Score=48.86 Aligned_cols=24 Identities=17% Similarity=0.097 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhh
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYT 114 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~ 114 (608)
+.++++|++|+|||||++++....
T Consensus 45 ~GvlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHc
Confidence 459999999999999999996443
No 466
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=88.28 E-value=0.25 Score=46.79 Aligned_cols=21 Identities=19% Similarity=0.178 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCchHHHHHHHH
Q 007325 91 RNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll 111 (608)
..++|+|++|+|||||+..++
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~ 44 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFI 44 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHH
Confidence 579999999999999999996
No 467
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=88.10 E-value=0.3 Score=47.46 Aligned_cols=23 Identities=17% Similarity=0.127 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCchHHHHHHHHHh
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFY 113 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~ 113 (608)
+.++|+|++|+|||||++++...
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 45999999999999999999643
No 468
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=87.90 E-value=0.32 Score=45.89 Aligned_cols=23 Identities=17% Similarity=0.066 Sum_probs=20.6
Q ss_pred CceeEEEEcCCCCchHHHHHHHH
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll 111 (608)
+...|+|+|.+|+||||++..|.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~ 46 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELE 46 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999995
No 469
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=87.85 E-value=0.35 Score=45.29 Aligned_cols=27 Identities=30% Similarity=0.334 Sum_probs=22.7
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhC
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTG 115 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g 115 (608)
....|+|+|.+||||||+.+.|....|
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~lg 37 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKYG 37 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 457899999999999999999965434
No 470
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=87.83 E-value=0.32 Score=45.35 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=21.1
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhC
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTG 115 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g 115 (608)
.|+|.|.+|+||||+.+.|....|
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999965444
No 471
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=87.78 E-value=0.33 Score=46.36 Aligned_cols=24 Identities=29% Similarity=0.124 Sum_probs=20.8
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhC
Q 007325 92 NIGIMAHIDAGKTTTTERVLFYTG 115 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~~g 115 (608)
.|+|+|.+|+||||+.+.|....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999975444
No 472
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=87.74 E-value=3 Score=42.62 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=21.5
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhh
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYT 114 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~ 114 (608)
.+++.|.|++|+|||||+..+....
T Consensus 44 ~~~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 44 YPRATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999997443
No 473
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=87.56 E-value=0.24 Score=50.15 Aligned_cols=24 Identities=21% Similarity=0.022 Sum_probs=20.7
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHh
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFY 113 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~ 113 (608)
--.+.|.|.+|+|||||+-.+...
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHH
Confidence 347899999999999999998744
No 474
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=87.55 E-value=0.28 Score=50.88 Aligned_cols=22 Identities=23% Similarity=0.178 Sum_probs=19.3
Q ss_pred eEEEEcCCCCchHHHHHHHHHh
Q 007325 92 NIGIMAHIDAGKTTTTERVLFY 113 (608)
Q Consensus 92 ~i~ivG~~~~GKTTL~~~ll~~ 113 (608)
..+|+|+.|||||||++++.+.
T Consensus 25 ~~~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5679999999999999999744
No 475
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=87.35 E-value=0.37 Score=46.62 Aligned_cols=25 Identities=12% Similarity=0.173 Sum_probs=21.6
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhC
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g 115 (608)
..|+|.|++|+||||+.+.|....|
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999965444
No 476
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=87.31 E-value=1.5 Score=44.33 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=21.3
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHh
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFY 113 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~ 113 (608)
.+.|.+.|++|+|||+|+.++...
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 368999999999999999999744
No 477
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=87.15 E-value=4.8 Score=40.19 Aligned_cols=39 Identities=15% Similarity=0.179 Sum_probs=26.1
Q ss_pred CHHHHHHHHHHHHHhCCeeEEEEeCCCCcEEEEeeChhhHHHHHHHHHhh
Q 007325 500 DIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKRE 549 (608)
Q Consensus 500 d~~kL~~aL~~L~~eDPsl~v~~~~etge~vl~g~GelHLev~~~rL~~~ 549 (608)
+...+.+.+..+.+.|-.++...+ -++|||.++-++...
T Consensus 282 ~~~~l~~i~~~l~~~d~~l~~g~~-----------~~~~le~~~~~~~~~ 320 (324)
T 3u61_B 282 TPQSIIRMYEIVGENNQYHGIAAN-----------TELHLAYLFIQLACE 320 (324)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTCSC-----------HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCC-----------HHHHHHHHHHHHHHh
Confidence 456677778888887766644222 248898888777543
No 478
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=86.95 E-value=0.41 Score=46.08 Aligned_cols=26 Identities=23% Similarity=0.091 Sum_probs=22.2
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhh
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYT 114 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~ 114 (608)
+...|+|.|.+|+||||+++.|....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999997443
No 479
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=86.87 E-value=0.34 Score=51.62 Aligned_cols=24 Identities=21% Similarity=0.022 Sum_probs=20.6
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHh
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFY 113 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~ 113 (608)
--.+.|.|.+|+|||||+-.+...
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~ 220 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKN 220 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHH
Confidence 347899999999999999998744
No 480
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=86.76 E-value=0.4 Score=47.36 Aligned_cols=23 Identities=17% Similarity=0.127 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCchHHHHHHHHHh
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFY 113 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~ 113 (608)
+.++|+|++|+|||||+.++...
T Consensus 74 ~gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCcChHHHHHHHHHHH
Confidence 45999999999999999999643
No 481
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=86.74 E-value=0.24 Score=49.68 Aligned_cols=22 Identities=18% Similarity=0.140 Sum_probs=17.1
Q ss_pred ceeEEEEcCCCCchHHHHHHHH
Q 007325 90 YRNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll 111 (608)
.+.|+|.|.+||||||+++.|.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~ 26 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFD 26 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999996
No 482
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=86.56 E-value=0.32 Score=48.48 Aligned_cols=22 Identities=18% Similarity=0.083 Sum_probs=20.0
Q ss_pred ceeEEEEcCCCCchHHHHHHHH
Q 007325 90 YRNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll 111 (608)
--.++|+|++|+|||||+..|.
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia 56 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQA 56 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHH
Confidence 4589999999999999999996
No 483
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=86.53 E-value=2.9 Score=44.43 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=21.8
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhh
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYT 114 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~ 114 (608)
.+.+.|.|++|+|||||+..+....
T Consensus 50 ~~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 50 LHSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Confidence 3689999999999999999997544
No 484
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=86.47 E-value=0.35 Score=52.02 Aligned_cols=21 Identities=24% Similarity=0.172 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCchHHHHHHHH
Q 007325 91 RNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll 111 (608)
-.++|+|+.|+|||||++.|.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~ 50 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFV 50 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHh
Confidence 589999999999999999996
No 485
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=86.43 E-value=0.56 Score=50.76 Aligned_cols=25 Identities=8% Similarity=-0.162 Sum_probs=21.1
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhh
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYT 114 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~ 114 (608)
-..+.|.|.+|+|||||+-.++...
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~ 266 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQW 266 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHH
Confidence 3478999999999999999997543
No 486
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=86.43 E-value=3.1 Score=47.30 Aligned_cols=93 Identities=19% Similarity=0.155 Sum_probs=51.3
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHhhCCcccceeeccCCccccchhhhhhcceeEeecEEEEeecCeeEEEEeCCCCCCc-
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF- 168 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df- 168 (608)
..++.+.|++|+|||+|+.++....+.. ...++- ..+++.+ ++. -.+-..||+..+
T Consensus 488 ~~~~ll~G~~GtGKT~la~~la~~l~~~--~~~i~~-s~~~~~~--------~~~------------~l~g~~~g~~g~~ 544 (758)
T 1r6b_X 488 VGSFLFAGPTGVGKTEVTVQLSKALGIE--LLRFDM-SEYMERH--------TVS------------RLIGAPPGYVGFD 544 (758)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHTCE--EEEEEG-GGCSSSS--------CCS------------SSCCCCSCSHHHH
T ss_pred ceEEEEECCCCCcHHHHHHHHHHHhcCC--EEEEec-hhhcchh--------hHh------------hhcCCCCCCcCcc
Confidence 4589999999999999999997554311 001100 0000000 000 001113454332
Q ss_pred -hHHHHHHHHhcCeEEEEEcCCCCCchhHHHHHHHHHh
Q 007325 169 -TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK 205 (608)
Q Consensus 169 -~~~~~~~l~~~D~~i~VvDa~~g~~~~t~~~~~~~~~ 205 (608)
.......++.+...|+++|=.+.........+.++..
T Consensus 545 ~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le 582 (758)
T 1r6b_X 545 QGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMD 582 (758)
T ss_dssp HTTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHH
T ss_pred ccchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhc
Confidence 1234556777888899999887776666655555443
No 487
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=86.30 E-value=2.3 Score=41.29 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCchHHHHHHHHHh
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFY 113 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~ 113 (608)
.+|.|.|.+|+|||+|+.++...
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHT
T ss_pred CCEEEECCCCCcHHHHHHHHHHh
Confidence 58999999999999999999643
No 488
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=86.26 E-value=0.42 Score=48.75 Aligned_cols=25 Identities=16% Similarity=0.050 Sum_probs=21.6
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhhC
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~g 115 (608)
..++|+|++|+|||||++.+....+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 5799999999999999999975443
No 489
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=86.26 E-value=0.36 Score=51.70 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=20.9
Q ss_pred CceeEEEEcCCCCchHHHHHHHH
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVL 111 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll 111 (608)
.-..++|+|+.|+|||||++.|+
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~ 159 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLC 159 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 45689999999999999999996
No 490
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=86.23 E-value=1.1 Score=46.31 Aligned_cols=24 Identities=25% Similarity=0.135 Sum_probs=20.6
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHh
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFY 113 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~ 113 (608)
-..+.|.|.+++|||||+-.++..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHH
Confidence 357889999999999999998744
No 491
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=86.19 E-value=0.49 Score=45.48 Aligned_cols=27 Identities=22% Similarity=0.199 Sum_probs=22.6
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHhhC
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFYTG 115 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~~g 115 (608)
+...|+|+|.+|+||||+.+.|....|
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 446899999999999999999965444
No 492
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=86.14 E-value=0.45 Score=46.26 Aligned_cols=24 Identities=13% Similarity=0.126 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCchHHHHHHHHHhh
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFYT 114 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~~ 114 (608)
+.+.|+|++|+|||||+.++....
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHHc
Confidence 579999999999999999996443
No 493
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=86.12 E-value=0.4 Score=45.85 Aligned_cols=23 Identities=13% Similarity=0.147 Sum_probs=20.5
Q ss_pred ceeEEEEcCCCCchHHHHHHHHH
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLF 112 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~ 112 (608)
-..++|+|++|+|||||+..|+.
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 35899999999999999999973
No 494
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=86.10 E-value=0.38 Score=43.53 Aligned_cols=25 Identities=20% Similarity=0.181 Sum_probs=21.4
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHh
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFY 113 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~ 113 (608)
..+++.|.|.+|+|||||+.++...
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999643
No 495
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=86.05 E-value=0.45 Score=44.30 Aligned_cols=23 Identities=13% Similarity=0.121 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCchHHHHHHHHHh
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFY 113 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~ 113 (608)
+++.|.|.+|+|||+|+.++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999643
No 496
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=86.03 E-value=3.2 Score=43.02 Aligned_cols=24 Identities=21% Similarity=0.156 Sum_probs=21.3
Q ss_pred ceeEEEEcCCCCchHHHHHHHHHh
Q 007325 90 YRNIGIMAHIDAGKTTTTERVLFY 113 (608)
Q Consensus 90 ~~~i~ivG~~~~GKTTL~~~ll~~ 113 (608)
.++|.|.|.+|+|||+|+.++...
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999644
No 497
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=85.94 E-value=0.56 Score=45.09 Aligned_cols=22 Identities=18% Similarity=0.046 Sum_probs=19.0
Q ss_pred eeEEEEcCCCCchHHHHHHHHH
Q 007325 91 RNIGIMAHIDAGKTTTTERVLF 112 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~ 112 (608)
.+|.+.|.+|+||||++-++..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~ 28 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAH 28 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHH
Confidence 5799999999999999877753
No 498
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=85.93 E-value=5.5 Score=44.12 Aligned_cols=25 Identities=24% Similarity=0.151 Sum_probs=21.6
Q ss_pred CceeEEEEcCCCCchHHHHHHHHHh
Q 007325 89 DYRNIGIMAHIDAGKTTTTERVLFY 113 (608)
Q Consensus 89 ~~~~i~ivG~~~~GKTTL~~~ll~~ 113 (608)
+-..|.|+|.+||||||+.+.|...
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~ 75 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEY 75 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999543
No 499
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=85.89 E-value=0.67 Score=50.42 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCchHHHHHHHHHh
Q 007325 91 RNIGIMAHIDAGKTTTTERVLFY 113 (608)
Q Consensus 91 ~~i~ivG~~~~GKTTL~~~ll~~ 113 (608)
..|.++|.+|+||||+...|...
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~ 58 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRY 58 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999643
No 500
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=85.83 E-value=0.4 Score=49.37 Aligned_cols=30 Identities=23% Similarity=0.154 Sum_probs=24.3
Q ss_pred CCCCCceeEEEEcCCCCchHHHHHHHHHhh
Q 007325 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYT 114 (608)
Q Consensus 85 ~~~~~~~~i~ivG~~~~GKTTL~~~ll~~~ 114 (608)
.+..+--.++|+|+.|+|||||++.|....
T Consensus 66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 66 LTCGIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred eeecCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 444555689999999999999999997543
Done!