Query 007326
Match_columns 608
No_of_seqs 496 out of 3983
Neff 10.0
Searched_HMMs 46136
Date Thu Mar 28 22:03:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007326.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007326hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03192 Voltage-dependent pot 100.0 1.8E-86 3.9E-91 741.7 60.7 539 59-608 47-594 (823)
2 KOG0498 K+-channel ERG and rel 100.0 1.7E-85 3.7E-90 684.7 47.7 545 59-605 63-642 (727)
3 KOG0500 Cyclic nucleotide-gate 100.0 1.3E-66 2.8E-71 501.3 33.3 417 80-509 3-432 (536)
4 KOG0501 K+-channel KCNQ [Inorg 100.0 1.9E-63 4.1E-68 484.4 29.9 441 62-513 206-671 (971)
5 KOG0499 Cyclic nucleotide-gate 100.0 5E-58 1.1E-62 448.0 32.0 423 59-506 213-647 (815)
6 KOG3713 Voltage-gated K+ chann 100.0 2.3E-30 4.9E-35 253.6 18.2 229 56-322 173-434 (477)
7 KOG1419 Voltage-gated K+ chann 99.9 3.6E-26 7.8E-31 224.0 8.7 274 52-355 72-353 (654)
8 KOG1545 Voltage-gated shaker-l 99.9 8.1E-25 1.8E-29 203.3 3.4 180 103-320 253-448 (507)
9 KOG4390 Voltage-gated A-type K 99.8 1.7E-22 3.6E-27 189.7 -6.1 176 103-316 227-407 (632)
10 PRK09392 ftrB transcriptional 99.6 2.5E-15 5.5E-20 144.3 13.8 128 386-514 6-133 (236)
11 COG2905 Predicted signal-trans 99.6 9.7E-15 2.1E-19 145.8 13.5 212 385-604 5-218 (610)
12 cd00038 CAP_ED effector domain 99.6 1.2E-14 2.5E-19 122.5 12.1 114 394-507 1-114 (115)
13 PRK11753 DNA-binding transcrip 99.6 2.3E-14 5E-19 135.2 13.7 119 396-514 6-125 (211)
14 PF00520 Ion_trans: Ion transp 99.6 1.6E-14 3.4E-19 135.1 11.1 187 107-314 1-200 (200)
15 PF00027 cNMP_binding: Cyclic 99.5 3.9E-14 8.5E-19 113.9 9.7 90 413-502 2-91 (91)
16 PRK10402 DNA-binding transcrip 99.5 4.2E-14 9E-19 134.5 10.8 111 404-514 25-135 (226)
17 smart00100 cNMP Cyclic nucleot 99.5 1.5E-13 3.2E-18 116.6 13.1 116 394-509 1-118 (120)
18 COG0664 Crp cAMP-binding prote 99.5 2.2E-13 4.8E-18 128.8 13.1 126 390-515 3-128 (214)
19 PRK11161 fumarate/nitrate redu 99.5 2.9E-13 6.3E-18 129.9 13.5 125 389-514 15-140 (235)
20 KOG1113 cAMP-dependent protein 99.5 1.9E-13 4.1E-18 128.9 8.5 127 384-515 119-245 (368)
21 KOG1420 Ca2+-activated K+ chan 99.4 4E-14 8.7E-19 140.0 4.1 221 65-321 118-344 (1103)
22 KOG0614 cGMP-dependent protein 99.4 4.4E-13 9.5E-18 132.1 6.4 118 380-502 147-264 (732)
23 PF07885 Ion_trans_2: Ion chan 99.4 4.8E-12 1E-16 98.0 10.4 55 265-319 24-78 (79)
24 KOG0614 cGMP-dependent protein 99.4 1.1E-12 2.5E-17 129.3 7.6 122 383-504 268-391 (732)
25 PLN02868 acyl-CoA thioesterase 99.3 4.3E-12 9.4E-17 131.4 11.6 113 386-501 7-119 (413)
26 TIGR03697 NtcA_cyano global ni 99.3 5.1E-12 1.1E-16 117.4 10.6 97 418-514 1-99 (193)
27 PRK09391 fixK transcriptional 99.3 8.2E-12 1.8E-16 118.9 10.8 106 406-514 34-139 (230)
28 PLN03192 Voltage-dependent pot 99.3 3.8E-09 8.3E-14 119.4 30.5 80 529-608 548-658 (823)
29 PRK13918 CRP/FNR family transc 99.2 3.9E-11 8.5E-16 112.3 10.7 98 409-513 5-104 (202)
30 KOG0512 Fetal globin-inducing 99.2 2.3E-11 5E-16 102.7 6.1 84 524-607 82-165 (228)
31 KOG4412 26S proteasome regulat 99.1 6.8E-11 1.5E-15 100.8 5.8 80 529-608 96-175 (226)
32 KOG4412 26S proteasome regulat 99.1 1.8E-10 3.8E-15 98.3 6.6 83 523-605 123-205 (226)
33 KOG1113 cAMP-dependent protein 99.1 1.5E-10 3.3E-15 109.6 6.5 115 383-501 236-350 (368)
34 KOG4214 Myotrophin and similar 99.0 5.8E-10 1.3E-14 84.0 5.7 70 538-607 33-102 (117)
35 PF13857 Ank_5: Ankyrin repeat 99.0 2.3E-10 4.9E-15 81.8 3.2 51 558-608 1-52 (56)
36 PRK10537 voltage-gated potassi 99.0 9.1E-09 2E-13 104.4 15.9 54 265-318 168-221 (393)
37 PF12796 Ank_2: Ankyrin repeat 98.9 3.6E-09 7.8E-14 84.4 8.2 64 539-602 26-89 (89)
38 KOG0509 Ankyrin repeat and DHH 98.9 2.1E-09 4.6E-14 109.6 7.1 71 536-606 75-146 (600)
39 KOG0514 Ankyrin repeat protein 98.8 7.1E-09 1.5E-13 98.3 7.8 73 535-607 336-409 (452)
40 PF13637 Ank_4: Ankyrin repeat 98.8 7.3E-09 1.6E-13 73.6 5.0 53 540-592 2-54 (54)
41 KOG0508 Ankyrin repeat protein 98.8 5.9E-09 1.3E-13 102.0 4.6 70 538-607 116-185 (615)
42 KOG3684 Ca2+-activated K+ chan 98.8 3E-06 6.4E-11 83.6 23.1 91 262-359 284-374 (489)
43 PHA02884 ankyrin repeat protei 98.8 2.4E-08 5.1E-13 97.2 8.8 73 536-608 67-140 (300)
44 KOG0509 Ankyrin repeat and DHH 98.7 1.6E-08 3.4E-13 103.4 6.9 79 530-608 102-181 (600)
45 KOG4177 Ankyrin [Cell wall/mem 98.7 1.5E-08 3.3E-13 112.3 6.9 80 529-608 530-609 (1143)
46 KOG0502 Integral membrane anky 98.7 1.5E-08 3.2E-13 89.4 4.8 77 532-608 153-229 (296)
47 KOG0195 Integrin-linked kinase 98.7 2.3E-08 5E-13 91.7 5.7 79 530-608 58-136 (448)
48 KOG0195 Integrin-linked kinase 98.7 2.5E-08 5.5E-13 91.4 5.4 83 526-608 21-103 (448)
49 PHA02741 hypothetical protein; 98.7 4.6E-08 9.9E-13 88.3 6.9 78 531-608 52-135 (169)
50 KOG0515 p53-interacting protei 98.7 2.4E-08 5.1E-13 98.9 5.3 72 532-603 576-647 (752)
51 PHA02791 ankyrin-like protein; 98.7 4.3E-08 9.3E-13 95.4 7.1 67 539-605 160-227 (284)
52 KOG2968 Predicted esterase of 98.7 2.1E-08 4.6E-13 105.4 5.2 115 401-515 499-613 (1158)
53 PHA02791 ankyrin-like protein; 98.6 6E-08 1.3E-12 94.4 7.5 68 540-607 62-129 (284)
54 PHA02859 ankyrin repeat protei 98.6 7.5E-08 1.6E-12 90.1 7.8 79 530-608 114-195 (209)
55 PF12796 Ank_2: Ankyrin repeat 98.6 9.6E-08 2.1E-12 76.1 7.3 62 543-608 1-62 (89)
56 PHA02795 ankyrin-like protein; 98.6 5.8E-08 1.3E-12 98.5 6.9 69 540-608 189-257 (437)
57 PHA02743 Viral ankyrin protein 98.6 6.8E-08 1.5E-12 86.8 6.6 78 530-607 84-163 (166)
58 PHA02946 ankyin-like protein; 98.6 1.3E-07 2.8E-12 99.1 9.2 79 529-607 62-143 (446)
59 PF13606 Ank_3: Ankyrin repeat 98.6 5.7E-08 1.2E-12 58.9 3.7 30 571-600 1-30 (30)
60 PF00023 Ank: Ankyrin repeat H 98.6 7.4E-08 1.6E-12 60.3 4.1 33 571-603 1-33 (33)
61 PHA02878 ankyrin repeat protei 98.6 1.1E-07 2.3E-12 101.5 8.0 78 530-607 192-271 (477)
62 KOG0508 Ankyrin repeat protein 98.6 5.4E-08 1.2E-12 95.4 4.5 78 530-608 141-218 (615)
63 PHA02743 Viral ankyrin protein 98.5 2.5E-07 5.3E-12 83.2 8.1 77 532-608 50-131 (166)
64 PHA02859 ankyrin repeat protei 98.5 2.7E-07 5.8E-12 86.4 8.6 79 530-608 77-161 (209)
65 PHA02884 ankyrin repeat protei 98.5 1.5E-07 3.2E-12 91.7 7.1 69 540-608 34-107 (300)
66 PHA02736 Viral ankyrin protein 98.5 9.8E-08 2.1E-12 84.9 5.2 70 538-607 54-128 (154)
67 PHA03095 ankyrin-like protein; 98.5 3.2E-07 6.9E-12 98.0 9.4 77 531-607 75-154 (471)
68 PHA02875 ankyrin repeat protei 98.5 2.5E-07 5.4E-12 96.9 8.3 73 535-607 131-203 (413)
69 PHA03095 ankyrin-like protein; 98.5 2.5E-07 5.5E-12 98.8 8.4 78 531-608 214-293 (471)
70 PHA02798 ankyrin-like protein; 98.5 2.6E-07 5.7E-12 98.8 7.9 72 531-602 101-178 (489)
71 KOG3193 K+ channel subunit [In 98.5 3.4E-07 7.4E-12 91.1 7.8 171 105-316 92-268 (1087)
72 PHA02716 CPXV016; CPX019; EVM0 98.5 2.6E-07 5.6E-12 100.5 7.5 73 536-608 174-250 (764)
73 KOG0514 Ankyrin repeat protein 98.5 1.4E-07 3E-12 89.7 4.5 76 532-607 261-375 (452)
74 PHA02875 ankyrin repeat protei 98.5 2.7E-07 5.8E-12 96.7 7.1 71 538-608 101-171 (413)
75 PHA02874 ankyrin repeat protei 98.5 3.6E-07 7.9E-12 96.2 8.0 79 530-608 148-226 (434)
76 PF08412 Ion_trans_N: Ion tran 98.5 1.3E-07 2.8E-12 70.5 3.1 42 60-101 33-74 (77)
77 KOG0515 p53-interacting protei 98.4 2.8E-07 6E-12 91.5 6.1 66 543-608 554-619 (752)
78 KOG2302 T-type voltage-gated C 98.4 1.8E-05 4E-10 84.3 19.6 92 58-161 1099-1204(1956)
79 PHA02946 ankyin-like protein; 98.4 8.6E-07 1.9E-11 92.9 10.2 61 548-608 48-108 (446)
80 PHA02741 hypothetical protein; 98.4 3.2E-07 6.9E-12 82.9 5.9 74 535-608 17-101 (169)
81 PHA03100 ankyrin repeat protei 98.4 4.6E-07 1E-11 97.0 8.2 69 540-608 216-286 (480)
82 KOG0512 Fetal globin-inducing 98.4 5.1E-07 1.1E-11 76.8 6.4 67 542-608 66-133 (228)
83 PHA02795 ankyrin-like protein; 98.4 4.3E-07 9.3E-12 92.2 6.7 75 530-604 212-294 (437)
84 PHA02878 ankyrin repeat protei 98.4 5.5E-07 1.2E-11 96.1 7.7 80 527-608 222-303 (477)
85 PF01007 IRK: Inward rectifier 98.4 2E-06 4.4E-11 85.0 10.2 98 211-321 40-142 (336)
86 PHA02730 ankyrin-like protein; 98.4 6.4E-07 1.4E-11 95.6 6.7 74 534-607 36-116 (672)
87 PHA02874 ankyrin repeat protei 98.4 9.2E-07 2E-11 93.2 7.9 75 532-608 183-257 (434)
88 PHA02716 CPXV016; CPX019; EVM0 98.3 8.2E-07 1.8E-11 96.7 7.3 80 529-608 307-402 (764)
89 KOG0510 Ankyrin repeat protein 98.3 6.8E-07 1.5E-11 93.7 6.1 77 531-607 333-412 (929)
90 PHA02792 ankyrin-like protein; 98.3 1.3E-06 2.7E-11 92.4 7.3 70 539-608 374-446 (631)
91 PTZ00322 6-phosphofructo-2-kin 98.3 1.3E-06 2.9E-11 96.0 7.6 72 535-606 111-189 (664)
92 PHA02736 Viral ankyrin protein 98.3 2E-06 4.2E-11 76.5 7.3 70 531-600 83-154 (154)
93 KOG0502 Integral membrane anky 98.3 8.3E-07 1.8E-11 78.6 4.6 68 540-607 194-261 (296)
94 PHA03100 ankyrin repeat protei 98.3 1.7E-06 3.7E-11 92.6 7.5 77 530-606 132-210 (480)
95 PF13857 Ank_5: Ankyrin repeat 98.3 7.9E-07 1.7E-11 63.4 3.3 50 530-579 7-56 (56)
96 KOG4214 Myotrophin and similar 98.3 1.3E-06 2.8E-11 66.2 4.4 65 543-608 6-70 (117)
97 PHA02798 ankyrin-like protein; 98.2 2E-06 4.4E-11 91.9 7.4 77 531-607 137-221 (489)
98 KOG0505 Myosin phosphatase, re 98.2 1.1E-06 2.4E-11 88.1 4.8 72 537-608 196-267 (527)
99 KOG3676 Ca2+-permeable cation 98.2 3.5E-06 7.5E-11 89.0 7.5 73 535-607 180-275 (782)
100 PHA02876 ankyrin repeat protei 98.2 3.1E-06 6.8E-11 94.5 7.8 71 538-608 144-214 (682)
101 PHA02989 ankyrin repeat protei 98.2 4.8E-06 1E-10 89.2 8.7 81 528-608 97-184 (494)
102 PHA02989 ankyrin repeat protei 98.2 4E-06 8.7E-11 89.8 7.7 79 529-607 134-220 (494)
103 PHA02917 ankyrin-like protein; 98.1 4.5E-06 9.8E-11 91.3 7.8 58 551-608 431-488 (661)
104 KOG1710 MYND Zn-finger and ank 98.1 3.7E-06 8.1E-11 77.5 5.3 76 532-607 38-114 (396)
105 PTZ00322 6-phosphofructo-2-kin 98.1 6.7E-06 1.4E-10 90.5 8.2 70 539-608 82-151 (664)
106 PHA02876 ankyrin repeat protei 98.1 5.7E-06 1.2E-10 92.5 7.5 79 530-608 399-479 (682)
107 PHA02917 ankyrin-like protein; 98.1 6.1E-06 1.3E-10 90.3 7.4 81 528-608 125-232 (661)
108 KOG0510 Ankyrin repeat protein 98.0 1E-05 2.3E-10 85.1 7.6 78 530-607 297-379 (929)
109 KOG0818 GTPase-activating prot 98.0 9.5E-06 2.1E-10 80.2 6.8 73 536-608 130-203 (669)
110 KOG0505 Myosin phosphatase, re 98.0 4.5E-06 9.8E-11 83.9 4.6 74 533-606 67-140 (527)
111 PHA02730 ankyrin-like protein; 98.0 2.1E-05 4.6E-10 84.2 9.0 78 530-608 370-465 (672)
112 KOG4177 Ankyrin [Cell wall/mem 98.0 8.1E-06 1.8E-10 91.2 5.9 77 532-608 500-576 (1143)
113 PF13637 Ank_4: Ankyrin repeat 98.0 8.7E-06 1.9E-10 57.6 3.7 37 572-608 1-37 (54)
114 TIGR00870 trp transient-recept 97.9 1.4E-05 3.1E-10 90.1 7.0 72 537-608 126-211 (743)
115 COG0666 Arp FOG: Ankyrin repea 97.9 2.2E-05 4.8E-10 74.5 7.2 80 529-608 96-183 (235)
116 PHA02792 ankyrin-like protein; 97.9 4.9E-05 1.1E-09 80.6 10.2 67 542-608 342-413 (631)
117 KOG0507 CASK-interacting adapt 97.9 1.7E-05 3.7E-10 82.9 5.6 71 537-607 80-150 (854)
118 KOG1418 Tandem pore domain K+ 97.9 0.00012 2.5E-09 77.3 11.9 55 266-320 116-170 (433)
119 KOG2968 Predicted esterase of 97.8 6.7E-05 1.5E-09 79.9 9.3 107 408-514 113-226 (1158)
120 cd00204 ANK ankyrin repeats; 97.8 6.7E-05 1.5E-09 63.4 6.9 76 533-608 34-109 (126)
121 KOG0506 Glutaminase (contains 97.8 2.3E-05 4.9E-10 77.3 4.2 76 533-608 500-576 (622)
122 KOG0783 Uncharacterized conser 97.7 2.4E-05 5.1E-10 82.3 3.8 76 533-608 46-122 (1267)
123 KOG3827 Inward rectifier K+ ch 97.7 0.00036 7.7E-09 67.9 11.1 101 209-322 66-171 (400)
124 cd00204 ANK ankyrin repeats; 97.7 0.00011 2.5E-09 62.0 6.9 70 538-607 6-75 (126)
125 KOG4404 Tandem pore domain K+ 97.6 0.00037 8.1E-09 66.0 9.5 55 265-319 186-248 (350)
126 COG0666 Arp FOG: Ankyrin repea 97.4 0.00043 9.3E-09 65.5 8.0 73 536-608 70-150 (235)
127 KOG4404 Tandem pore domain K+ 97.4 0.00018 3.8E-09 68.2 4.9 52 265-316 80-131 (350)
128 KOG0511 Ankyrin repeat protein 97.4 0.00028 6.1E-09 67.9 6.2 61 540-600 37-97 (516)
129 PRK11832 putative DNA-binding 97.4 0.0016 3.4E-08 59.2 10.4 96 402-501 14-110 (207)
130 KOG3676 Ca2+-permeable cation 97.4 0.00029 6.3E-09 74.9 6.0 70 539-608 240-311 (782)
131 PLN03223 Polycystin cation cha 97.3 0.061 1.3E-06 61.0 23.1 54 71-124 1173-1234(1634)
132 PF04831 Popeye: Popeye protei 97.3 0.0057 1.2E-07 51.9 11.4 106 397-507 14-126 (153)
133 KOG0522 Ankyrin repeat protein 97.2 0.00043 9.3E-09 69.9 5.2 67 528-594 44-110 (560)
134 KOG1710 MYND Zn-finger and ank 97.2 0.00056 1.2E-08 63.5 5.5 67 541-607 14-81 (396)
135 KOG0782 Predicted diacylglycer 97.0 0.00087 1.9E-08 67.7 4.6 74 535-608 895-970 (1004)
136 KOG0705 GTPase-activating prot 96.9 0.0021 4.5E-08 65.5 6.7 65 535-599 657-721 (749)
137 KOG0522 Ankyrin repeat protein 96.9 0.0017 3.8E-08 65.7 6.0 68 541-608 22-91 (560)
138 TIGR00870 trp transient-recept 96.8 0.0015 3.3E-08 73.8 5.7 71 538-608 174-260 (743)
139 KOG0507 CASK-interacting adapt 96.8 0.00084 1.8E-08 70.7 3.1 77 532-608 42-118 (854)
140 KOG0705 GTPase-activating prot 96.8 0.0023 4.9E-08 65.2 5.9 80 529-608 614-697 (749)
141 KOG2301 Voltage-gated Ca2+ cha 96.8 0.022 4.9E-07 67.2 14.7 106 105-226 475-582 (1592)
142 KOG0521 Putative GTPase activa 96.7 0.0011 2.4E-08 73.0 3.7 73 535-607 652-724 (785)
143 KOG3542 cAMP-regulated guanine 96.7 0.0048 1E-07 63.9 7.9 113 383-500 277-391 (1283)
144 KOG0818 GTPase-activating prot 96.7 0.0025 5.4E-08 63.7 5.1 58 537-594 165-222 (669)
145 PF00023 Ank: Ankyrin repeat H 96.6 0.0023 5.1E-08 39.7 3.0 32 539-570 2-33 (33)
146 PF13606 Ank_3: Ankyrin repeat 96.5 0.0025 5.3E-08 38.5 2.6 29 539-567 2-30 (30)
147 KOG2301 Voltage-gated Ca2+ cha 96.3 0.047 1E-06 64.6 13.3 112 103-229 872-986 (1592)
148 KOG0506 Glutaminase (contains 96.3 0.0039 8.4E-08 62.1 3.9 67 530-596 530-597 (622)
149 KOG3542 cAMP-regulated guanine 96.0 0.0096 2.1E-07 61.8 5.1 92 386-490 36-127 (1283)
150 smart00248 ANK ankyrin repeats 95.9 0.014 3.1E-07 34.0 3.8 29 571-599 1-29 (30)
151 KOG1418 Tandem pore domain K+ 95.5 0.0042 9.1E-08 65.4 0.6 46 266-311 243-296 (433)
152 KOG2302 T-type voltage-gated C 95.4 0.11 2.5E-06 56.6 10.3 108 77-199 1444-1562(1956)
153 KOG2384 Major histocompatibili 95.3 0.051 1.1E-06 47.8 6.4 72 531-602 4-76 (223)
154 KOG2505 Ankyrin repeat protein 95.2 0.034 7.5E-07 56.0 5.8 61 548-608 400-466 (591)
155 KOG4369 RTK signaling protein 95.0 0.019 4.1E-07 63.4 3.6 72 537-608 755-827 (2131)
156 KOG0783 Uncharacterized conser 94.0 0.016 3.4E-07 61.9 0.1 44 564-607 44-88 (1267)
157 KOG3614 Ca2+/Mg2+-permeable ca 93.7 4.1 8.9E-05 47.1 17.9 89 70-166 790-878 (1381)
158 KOG4369 RTK signaling protein 93.6 0.065 1.4E-06 59.4 3.7 62 541-602 826-887 (2131)
159 KOG0498 K+-channel ERG and rel 93.3 11 0.00023 41.8 19.9 42 370-411 371-417 (727)
160 KOG3609 Receptor-activated Ca2 91.4 11 0.00025 41.5 16.9 130 177-320 474-609 (822)
161 KOG3599 Ca2+-modulated nonsele 91.2 26 0.00056 39.6 20.0 21 104-124 499-519 (798)
162 KOG0520 Uncharacterized conser 90.8 0.11 2.4E-06 57.5 1.5 44 558-601 627-670 (975)
163 PF00060 Lig_chan: Ligand-gate 90.7 0.63 1.4E-05 40.5 6.1 58 262-320 41-98 (148)
164 PF08016 PKD_channel: Polycyst 90.7 11 0.00025 39.4 16.3 22 103-124 242-263 (425)
165 KOG3609 Receptor-activated Ca2 86.7 1.7 3.7E-05 47.5 6.9 61 542-602 91-161 (822)
166 KOG0782 Predicted diacylglycer 85.7 1.8 3.9E-05 44.7 6.1 63 532-594 927-989 (1004)
167 KOG4440 NMDA selective glutama 84.4 2.4 5.2E-05 44.5 6.3 96 212-319 572-667 (993)
168 COG4709 Predicted membrane pro 81.4 10 0.00022 33.8 8.0 73 328-402 4-82 (195)
169 KOG0521 Putative GTPase activa 80.5 1.6 3.5E-05 48.7 3.8 52 557-608 639-692 (785)
170 KOG2505 Ankyrin repeat protein 80.4 1.1 2.4E-05 45.6 2.2 44 537-580 428-471 (591)
171 PLN03223 Polycystin cation cha 79.8 1.2E+02 0.0026 36.0 17.7 17 145-161 1208-1225(1634)
172 PF00520 Ion_trans: Ion transp 79.3 15 0.00032 33.3 9.5 30 204-233 95-124 (200)
173 PF08006 DUF1700: Protein of u 78.9 13 0.00027 33.7 8.5 55 328-384 4-64 (181)
174 PF07883 Cupin_2: Cupin domain 77.3 4.8 0.0001 29.6 4.5 44 413-462 3-47 (71)
175 KOG1053 Glutamate-gated NMDA-t 76.5 30 0.00065 38.6 11.3 33 286-318 630-662 (1258)
176 smart00835 Cupin_1 Cupin. This 74.3 10 0.00022 32.9 6.3 54 410-463 32-86 (146)
177 KOG1052 Glutamate-gated kainat 70.0 20 0.00042 40.1 8.9 52 268-320 384-435 (656)
178 PF06128 Shigella_OspC: Shigel 66.2 13 0.00028 34.3 5.1 52 546-597 224-279 (284)
179 PF05899 Cupin_3: Protein of u 64.8 12 0.00027 28.0 4.2 29 429-462 26-54 (74)
180 KOG0501 K+-channel KCNQ [Inorg 64.6 2E+02 0.0044 30.7 16.2 50 369-418 499-553 (971)
181 PRK13290 ectC L-ectoine syntha 63.8 28 0.00061 29.3 6.5 68 412-488 39-106 (125)
182 PHA01757 hypothetical protein 63.3 39 0.00085 25.2 6.2 46 289-334 4-49 (98)
183 TIGR03037 anthran_nbaC 3-hydro 62.9 24 0.00051 30.9 6.0 63 422-492 43-105 (159)
184 KOG3300 NADH:ubiquinone oxidor 62.7 22 0.00048 29.4 5.4 43 332-374 63-106 (146)
185 KOG0500 Cyclic nucleotide-gate 57.5 2.5E+02 0.0055 29.5 13.3 77 347-440 248-348 (536)
186 PF14377 DUF4414: Domain of un 55.8 26 0.00057 28.5 4.9 42 342-383 52-105 (108)
187 KOG1054 Glutamate-gated AMPA-t 54.7 11 0.00023 39.7 3.0 53 266-319 596-648 (897)
188 PRK09108 type III secretion sy 54.4 1.8E+02 0.004 29.5 11.6 60 294-353 181-241 (353)
189 PRK13264 3-hydroxyanthranilate 53.8 38 0.00083 30.2 5.8 69 416-492 42-111 (177)
190 PF08285 DPM3: Dolichol-phosph 53.6 1.1E+02 0.0024 24.1 8.7 43 302-344 44-90 (91)
191 PF02037 SAP: SAP domain; Int 50.6 38 0.00083 21.0 3.9 26 330-355 5-35 (35)
192 PRK12721 secretion system appa 49.8 2.4E+02 0.0052 28.6 11.6 24 331-354 217-240 (349)
193 KOG3713 Voltage-gated K+ chann 48.3 3.3E+02 0.0072 28.6 12.2 25 103-127 273-297 (477)
194 COG1917 Uncharacterized conser 47.9 36 0.00078 28.7 4.8 50 410-465 45-95 (131)
195 COG0662 {ManC} Mannose-6-phosp 47.7 41 0.00089 28.3 5.1 48 409-462 37-85 (127)
196 PRK04190 glucose-6-phosphate i 47.3 66 0.0014 29.3 6.6 51 411-462 71-130 (191)
197 COG4792 EscU Type III secretor 46.8 2.9E+02 0.0063 27.0 11.2 13 275-287 166-178 (349)
198 PRK05702 flhB flagellar biosyn 46.3 2.9E+02 0.0064 28.1 11.6 22 332-353 225-246 (359)
199 TIGR00328 flhB flagellar biosy 46.1 3E+02 0.0066 27.8 11.6 23 331-353 217-239 (347)
200 PRK08156 type III secretion sy 45.5 3.2E+02 0.0069 27.9 11.6 23 332-354 213-235 (361)
201 PRK12468 flhB flagellar biosyn 44.5 3.2E+02 0.007 28.1 11.7 23 331-353 224-246 (386)
202 PRK13109 flhB flagellar biosyn 43.6 3.5E+02 0.0075 27.6 11.6 23 331-353 226-248 (358)
203 TIGR01404 FlhB_rel_III type II 43.4 3.5E+02 0.0075 27.4 11.6 23 332-354 217-239 (342)
204 PF13314 DUF4083: Domain of un 42.3 1.2E+02 0.0026 21.3 6.8 14 326-339 43-56 (58)
205 KOG0511 Ankyrin repeat protein 41.2 99 0.0022 31.0 7.0 63 528-593 58-120 (516)
206 COG3718 IolB Uncharacterized e 40.7 83 0.0018 29.3 6.0 72 410-491 31-111 (270)
207 KOG1545 Voltage-gated shaker-l 40.6 55 0.0012 32.5 5.1 16 149-164 252-268 (507)
208 TIGR03404 bicupin_oxalic bicup 40.4 61 0.0013 33.1 5.8 51 411-462 70-120 (367)
209 PF06295 DUF1043: Protein of u 40.2 1.5E+02 0.0033 25.0 7.3 42 310-357 11-54 (128)
210 KOG2378 cAMP-regulated guanine 40.1 27 0.00059 35.6 3.1 45 458-502 1-46 (573)
211 COG1422 Predicted membrane pro 39.5 89 0.0019 28.4 5.9 39 304-342 50-92 (201)
212 PF00190 Cupin_1: Cupin; Inte 39.0 45 0.00097 28.8 4.1 53 411-463 37-95 (144)
213 COG3837 Uncharacterized conser 38.2 53 0.0012 28.5 4.1 39 421-465 57-95 (161)
214 TIGR03404 bicupin_oxalic bicup 35.6 81 0.0018 32.2 5.8 52 410-462 247-299 (367)
215 PF07697 7TMR-HDED: 7TM-HD ext 33.2 49 0.0011 30.8 3.7 58 371-429 147-207 (222)
216 PRK12772 bifunctional flagella 33.1 4.8E+02 0.01 28.8 11.6 24 331-354 480-503 (609)
217 PF10011 DUF2254: Predicted me 32.6 1.8E+02 0.004 29.7 7.9 57 263-319 98-154 (371)
218 PRK06298 type III secretion sy 32.4 5.5E+02 0.012 26.1 11.6 23 332-354 219-241 (356)
219 PF08475 Baculo_VP91_N: Viral 32.0 79 0.0017 28.4 4.4 25 318-342 19-43 (183)
220 KOG0520 Uncharacterized conser 30.7 21 0.00046 40.4 0.8 71 537-608 572-644 (975)
221 PF07077 DUF1345: Protein of u 30.3 3.7E+02 0.008 24.3 8.5 48 265-312 132-179 (180)
222 PF06212 GRIM-19: GRIM-19 prot 30.1 2.6E+02 0.0056 23.7 7.0 31 343-373 71-101 (130)
223 PF14377 DUF4414: Domain of un 29.3 1.5E+02 0.0032 24.1 5.4 46 342-387 8-68 (108)
224 PF12973 Cupin_7: ChrR Cupin-l 27.6 85 0.0018 24.4 3.6 63 410-487 26-88 (91)
225 PRK11171 hypothetical protein; 27.5 1.7E+02 0.0036 28.4 6.3 69 411-488 64-134 (266)
226 TIGR00048 radical SAM enzyme, 27.2 3.9E+02 0.0085 27.2 9.1 51 330-383 13-63 (355)
227 PRK11171 hypothetical protein; 27.1 1.3E+02 0.0027 29.3 5.4 48 409-462 185-233 (266)
228 COG5559 Uncharacterized conser 26.3 68 0.0015 22.4 2.3 23 340-362 8-30 (65)
229 PRK14470 ribosomal RNA large s 26.1 4.7E+02 0.01 26.4 9.3 48 332-383 7-54 (336)
230 COG2140 Thermophilic glucose-6 25.9 1.5E+02 0.0032 27.3 5.1 36 426-462 101-136 (209)
231 smart00513 SAP Putative DNA-bi 25.1 1.2E+02 0.0025 18.7 3.2 24 331-354 6-34 (35)
232 TIGR00933 2a38 potassium uptak 24.9 5.6E+02 0.012 26.4 10.0 46 265-310 128-179 (390)
233 PRK09943 DNA-binding transcrip 24.4 1.8E+02 0.0039 26.2 5.7 53 427-488 127-179 (185)
234 PF08566 Pam17: Mitochondrial 24.0 5E+02 0.011 23.2 7.8 55 291-345 74-132 (173)
235 smart00511 ORANGE Orange domai 23.8 2.2E+02 0.0048 18.7 4.9 36 325-360 5-41 (45)
236 PRK14461 ribosomal RNA large s 23.5 4.8E+02 0.01 26.7 8.7 51 330-383 14-64 (371)
237 PRK14459 ribosomal RNA large s 22.6 6.3E+02 0.014 25.9 9.5 50 331-383 29-78 (373)
238 TIGR03214 ura-cupin putative a 22.4 1.4E+02 0.003 28.8 4.7 49 408-462 179-228 (260)
239 PHA02909 hypothetical protein; 21.6 1.1E+02 0.0023 21.1 2.5 24 276-299 13-36 (72)
240 PF12983 DUF3867: Protein of u 21.4 4.2E+02 0.0091 23.5 6.7 16 259-274 17-32 (186)
241 PF06249 EutQ: Ethanolamine ut 21.4 1.5E+02 0.0032 25.9 4.0 50 428-488 95-144 (152)
242 PF13623 SurA_N_2: SurA N-term 21.3 5.4E+02 0.012 22.2 8.0 43 297-339 10-66 (145)
243 PLN00212 glutelin; Provisional 20.5 1.6E+02 0.0035 31.3 5.0 57 408-464 348-405 (493)
No 1
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=100.00 E-value=1.8e-86 Score=741.75 Aligned_cols=539 Identities=34% Similarity=0.618 Sum_probs=479.7
Q ss_pred ccccceEEcCCChhHHHHHHHHHHHHHHHHHHhhhhheeccCCC-cCeehHHHHHHHHHHHHHHhhceeeEEeCCCcEEe
Q 007326 59 HFSRNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLS-KNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLI 137 (608)
Q Consensus 59 ~~~~~~~i~p~s~~~~~w~~~~~~~~~~~~~~~p~~~~f~~~~~-~~~~~~~~~~~~if~~d~~l~f~t~~~~~~~~~~i 137 (608)
...+.|+|+|.++++++|+.+++++++|+++++|+.++|....+ ..++++|.+++++|++|++++|+|+|++++++.+|
T Consensus 47 ~~~~~~ii~P~~~~~~~Wd~~~~~~~~y~~~~~p~~~~F~~~~~~~~~~~~d~i~~~~F~iDi~l~f~~ay~d~~~~~lV 126 (823)
T PLN03192 47 IGSDGWIISPMDSRYRWWETLMVVLVAYSAWVYPFEVAFLNASPKRGLEIADNVVDLFFAVDIVLTFFVAYIDPRTQLLV 126 (823)
T ss_pred cccCCeEECCCCcHHHHHHHHHHHHHHHHHHHHHHHHHeeCCCCCCCeeeHHHHHHHHHHHHHHhheeEEEEeCCCcEEE
Confidence 34567999999999999999999999999999999999965433 35889999999999999999999999999999999
Q ss_pred eccHHHHHHHhhccchhHHHhhccHHHHHhhc-Cc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 007326 138 CKRTPIALRYLRSSFIIDLFSCMPWDLIYKAS-GR---KEAVRYLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLI 213 (608)
Q Consensus 138 ~~~~~i~~~y~~~~f~iDll~~lP~~~~~~~~-~~---~~~~~~l~llrl~rl~r~~~~~~~~~~~~~~~~~~~~~~~l~ 213 (608)
.||++|+++|+|+||++|+++++|++++.... +. ...+.+++++|++|+.|+.+++.++++....++...++++++
T Consensus 127 ~d~~~I~~~Yl~~~f~~Dlis~lP~~~i~~~~~~~~~~~~~~~~l~llrl~Rl~ri~~~~~~le~~~~~~~~~~~~~kli 206 (823)
T PLN03192 127 RDRKKIAVRYLSTWFLMDVASTIPFQALAYLITGTVKLNLSYSLLGLLRFWRLRRVKQLFTRLEKDIRFSYFWIRCARLL 206 (823)
T ss_pred eCHHHHHHHHHHHhHHHHHHHHhHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 99999999999999999999999998764322 21 234678889999999999999999998888777778999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccCCCCcccccccchHHHHHHHHHHHhhhhcccccCCcccCChhhH
Q 007326 214 AVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREM 293 (608)
Q Consensus 214 ~~~~~~~h~~ac~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~y~~~~t~ttvGygdi~p~~~~e~ 293 (608)
+.+++++||+||+||+++...+. .+.+|+... +.++.+.+++.+|+.|+||+++|||||||||++|.|..|+
T Consensus 207 ~~~l~~~H~~aC~~y~i~~~~~~--~~~~Wi~~~------~~~~~~~s~~~~Yi~slYwai~TmtTVGYGDi~p~t~~E~ 278 (823)
T PLN03192 207 SVTLFLVHCAGCLYYLIADRYPH--QGKTWIGAV------IPNFRETSLWIRYISAIYWSITTMTTVGYGDLHAVNTIEM 278 (823)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCC--CCCchHHHh------hhccccCcHHHHHHHHHHHHHHHHhhccCCCcCCCccchH
Confidence 99999999999999999865433 346898641 2345667899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc-CchhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhc-cccHHHHHhh
Q 007326 294 VFIMIYVSFDMILGAYLIGNMTALIVK-GSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYES-SYTEASVLQD 371 (608)
Q Consensus 294 ~~~~~~~~~g~~~~a~~i~~i~~~~~~-~~~~~~~~~~~~~~~~~m~~~~l~~~l~~~v~~y~~~~~~~-~~~~~~~l~~ 371 (608)
++++++|++|++++||++|++++++.+ ..++.+|+++++.+++||+++++|++||+||++|++++|+. +.++++++++
T Consensus 279 i~~i~~ml~g~~~~a~~ig~i~~li~~~~~~~~~f~~~~~~~~~ym~~~~lp~~lq~ri~~y~~~~~~~~~~~~~~~l~~ 358 (823)
T PLN03192 279 IFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKDQILAYMCLRFKAESLNQQQLIDQ 358 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 999999999999999999999999988 56678999999999999999999999999999999999975 5678899999
Q ss_pred CCHHHHHHHHHHHhHhhhcccccccCCCHHHHHHHHHHcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcce
Q 007326 372 IPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTED 451 (608)
Q Consensus 372 lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~ 451 (608)
||++||.++..+++.+.++++++|++++++++.+++..++++.|+|||.|+.+||.++.+|||.+|.|+++. ..+|++.
T Consensus 359 Lp~~Lr~~i~~~l~~~~l~~~~lF~~~s~~~l~~L~~~~~~~~~~pge~I~~qge~~~~lY~I~~G~V~i~~-~~~~~e~ 437 (823)
T PLN03192 359 LPKSICKSICQHLFLPVVEKVYLFKGVSREILLLLVTKMKAEYIPPREDVIMQNEAPDDVYIVVSGEVEIID-SEGEKER 437 (823)
T ss_pred cCHHHHHHHHHHHHHHHHhhCcchhcCCHHHHHHHHHhhheeeeCCCCEEEECCCCCceEEEEEecEEEEEE-ecCCcce
Confidence 999999999999999999999999999999999999999999999999999999999999999999999986 4567788
Q ss_pred eeEeeCCCCeecchhhhcCCCcccEEEEeeceeeEEechhhHHHHHHHhhhcHHHHHHHHhccccchhh--hhhhhhccc
Q 007326 452 YVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGKESDLR--LKQLQSDIT 529 (608)
Q Consensus 452 ~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~--~~~l~~~~~ 529 (608)
++..+++|++|||.+++.+.|++++++|.+.|+++.+++++|.++++.+|++...+++++.++...... ...+..+..
T Consensus 438 ~l~~l~~Gd~FGE~~~l~~~p~~~t~ra~~~s~ll~l~~~~f~~ll~~~p~d~~~i~~~~l~~~~~l~~l~v~~ll~~~~ 517 (823)
T PLN03192 438 VVGTLGCGDIFGEVGALCCRPQSFTFRTKTLSQLLRLKTSTLIEAMQTRQEDNVVILKNFLQHHKELHDLNVGDLLGDNG 517 (823)
T ss_pred eeEEccCCCEecchHHhcCCCCCCeEEEcccEEEEEEEHHHHHHHHHHhhHHHHHHHHHHHHHhhhhccccHHHHHhhcc
Confidence 899999999999999999999999999999999999999999999999999999999999875432111 111111111
Q ss_pred ccccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 530 FHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 530 ~~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
.. ..+.....+++.||..|+.+.++.|++.|+++|..|..|.||||.|+..|+.+++++|+++|+|+|.+|.+|+|+
T Consensus 518 ~~--~~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~Tp 594 (823)
T PLN03192 518 GE--HDDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTA 594 (823)
T ss_pred cc--cCCccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCH
Confidence 11 223345677889999999999999999999999999999999999999999999999999999999999999984
No 2
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-85 Score=684.70 Aligned_cols=545 Identities=35% Similarity=0.570 Sum_probs=464.2
Q ss_pred ccccceEEcCCChhHHHHHHHHHHHHHHHHHHhhhhheeccC----------CCcCeehHHHHHHHHHHHHHHhhceeeE
Q 007326 59 HFSRNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRG----------LSKNLYVLDIVGQIAFLFDIVLQFCLAY 128 (608)
Q Consensus 59 ~~~~~~~i~p~s~~~~~w~~~~~~~~~~~~~~~p~~~~f~~~----------~~~~~~~~~~~~~~if~~d~~l~f~t~~ 128 (608)
.....++++|.|++++.|+.+++++++|++++.|+.++|... ....+.++|.++|++|++||+++|+|+|
T Consensus 63 ~~~~~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~~d~~~~~~l~v~d~ivD~fflvdIvL~Frtay 142 (727)
T KOG0498|consen 63 DKSRKWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKCIDGKLAAPLTVLDTIVDIFFLVDIVLNFRTAY 142 (727)
T ss_pred ccccceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEecccccccccccccCceeeHHHHHHHHHHHHHHHhheEEE
Confidence 344556999999999999999999999999999999999765 4567899999999999999999999999
Q ss_pred EeCCCcEEeeccHHHHHHHhhccchhHHHhhccHHHHHhhcC---------chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007326 129 RDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASG---------RKEAVRYLLWIRLYRVRKVSQFFHKMEKD 199 (608)
Q Consensus 129 ~~~~~~~~i~~~~~i~~~y~~~~f~iDll~~lP~~~~~~~~~---------~~~~~~~l~llrl~rl~r~~~~~~~~~~~ 199 (608)
.++.+.++|.||++|++||+++||++|++|++|++.++.... ......++.+.||+|+.|+.++++++++.
T Consensus 143 v~~~s~elV~dpk~IA~rYl~twFiiDlis~lP~~~i~~~~~~~~~~~~~~~~~l~~il~~~rL~Rl~Rv~~l~~r~~k~ 222 (727)
T KOG0498|consen 143 VDPSSYELVDDPKKIAKRYLKTWFLIDLISTLPFDQIVVLVVIGSTSLALESTILVGILLLQRLPRLRRVIPLFARLEKD 222 (727)
T ss_pred ECCCCceeeeCHHHHHHHHHhhhHHHHHHHhcChhhheeeeeecccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988999999999999999999999999999998876432 22467788999999999999999999998
Q ss_pred hhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCc-ccccccccCCCCccc----ccccchHHHHHHHHHH
Q 007326 200 IRINY--MFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGY-TWIGSLKMGDYSYAD----FREIGFWKSYITSMYA 272 (608)
Q Consensus 200 ~~~~~--~~~~~~~l~~~~~~~~h~~ac~~~~~~~~~~~~~~~~-~w~~~~~~~~~~~~~----~~~~~~~~~Y~~s~y~ 272 (608)
...++ .+..+.++++..++..||+||+||+++...++..... +|+..... .....+ +...++..+|++|+||
T Consensus 223 ~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~tw~~~l~~-~~~~~~~~~~fg~~s~~~kY~~aLyw 301 (727)
T KOG0498|consen 223 TGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKATWLGSLGR-LLSCYNLSFTFGIYSLALKYVYALYW 301 (727)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccc-ccccCcccccccchhHHHHHHHHHHH
Confidence 77765 3344778999999999999999999998877666666 99987543 222333 6677888999999999
Q ss_pred HhhhhcccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchhHHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 007326 273 SVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK-GSKTEKFRDKMTDLMKYINRNRLGRDIRDQI 351 (608)
Q Consensus 273 ~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~-~~~~~~~~~~~~~~~~~m~~~~l~~~l~~~v 351 (608)
+++||||+||||.+|.++.|++|+|++|++|.+++|++|||+.+++++ .++.++|+.+++++++||++++||++||+||
T Consensus 302 ~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi 381 (727)
T KOG0498|consen 302 GLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRI 381 (727)
T ss_pred HhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 7889999999999999999999999999999
Q ss_pred HHHHHHHhhc--cccHHHHHhhCCHHHHHHHHHHHhHhhhcccccccCCCHHHHHHHHHHcccccccCCCeEEccCCccC
Q 007326 352 IGHLRLQYES--SYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVD 429 (608)
Q Consensus 352 ~~y~~~~~~~--~~~~~~~l~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~ 429 (608)
++|++|+|.. +.+|++++++||+.||.+|+.++|.++++++|+|+++|+..+.+|+.++++..|.|||+|++|||+.+
T Consensus 382 ~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~ 461 (727)
T KOG0498|consen 382 RRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVT 461 (727)
T ss_pred HHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccc
Confidence 9999999965 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeeEEEEEEeccCCcceeeEeeCCCCeec-chhhhcC-CCcccEEEEeeceeeEEechhhHHHHHHHhhhcHHHH
Q 007326 430 QLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG-EVSILCN-IPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKV 507 (608)
Q Consensus 430 ~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fG-e~~~~~~-~~~~~~~~a~~~~~l~~l~~~~~~~l~~~~~~~~~~~ 507 (608)
.||||.+|.+++...+ +|.+.....+++||+|| |+..... .|.+.||+|.+.|+++.|.+++|..+++.+|.++.++
T Consensus 462 ~myFI~rG~le~~~~~-~g~~~~~~~L~~Gd~~GeEl~~~~~~~p~t~TVralt~~el~~L~~~dL~~V~~~f~~~~~~~ 540 (727)
T KOG0498|consen 462 DMYFIVRGSLESITTD-GGGFFVVAILGPGDFFGEELLTWCLDLPQTRTVRALTYCELFRLSADDLKEVLQQFRRLGSKF 540 (727)
T ss_pred eeEEEEeeeEEEEEcc-CCceEEEEEecCCCccchHHHHHHhcCCCCceeehhhhhhHHhccHHHHHHHHHHhHHHHHHH
Confidence 9999999999998754 45667899999999999 8887777 8889999999999999999999999999999999999
Q ss_pred HHH---Hhccccchhhhhhhhhcccccccch-hhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcC
Q 007326 508 LTN---LLQGKESDLRLKQLQSDITFHISKH-EAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRG 583 (608)
Q Consensus 508 ~~~---l~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~ 583 (608)
+++ +.......-.....+.+...+..++ ..+.......++..++..-....+..+..++..+..|.+|+|.++..+
T Consensus 541 l~~~~r~~s~~~r~~aa~~iq~a~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 620 (727)
T KOG0498|consen 541 LQHTFRYYSHLWRTWAACFIQAAWRRHIKRKGEEELALEEEESAIRGDDRGSKSLLRAGILASRFAANGRPPLHTAASRG 620 (727)
T ss_pred HHhHHHHhhhhhhhhhhhhHHHHHHHHHHhhccchhhhhcchhhhccccccchhhhhcccccccccccCCCccccccccC
Confidence 884 3332211111111111111111111 111111112222333333445667788899999999999999999999
Q ss_pred cHHHHHHHHHcCCCCCccCCCC
Q 007326 584 YEEIMTFLIQKGVDINLKGNSI 605 (608)
Q Consensus 584 ~~~~v~~Ll~~gad~~~~~~~g 605 (608)
...+...++.++++++..+.+|
T Consensus 621 ~~~~~~~~~~~~~~p~f~~~~~ 642 (727)
T KOG0498|consen 621 SSDCALLLLQKPADPDFSDAEG 642 (727)
T ss_pred ccccccccCCCCCCCCcccccc
Confidence 9999999999999999887654
No 3
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-66 Score=501.32 Aligned_cols=417 Identities=23% Similarity=0.421 Sum_probs=367.0
Q ss_pred HHHHHHHHHHHhhhhheeccC---CCcCeehHHHHHHHHHHHHHHhhceeeEEeCCCcEEeeccHHHHHHHhhc-cchhH
Q 007326 80 ILIWAVYSSIFTPVEFGFFRG---LSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRS-SFIID 155 (608)
Q Consensus 80 ~~~~~~~~~~~~p~~~~f~~~---~~~~~~~~~~~~~~if~~d~~l~f~t~~~~~~~~~~i~~~~~i~~~y~~~-~f~iD 155 (608)
+.+.++|++++++...+|..- ....|..+|+++|++|++|++++.+++|.++| .+|.|-++.++||+.+ .|.+|
T Consensus 3 vs~~vLYN~~~li~r~~F~di~~~y~~~wl~ld~~~D~vyllDi~v~~R~gyleqG--llV~~~~Kl~~hY~~s~~f~lD 80 (536)
T KOG0500|consen 3 VSLGVLYNMIVLIVRAAFDDIQSSYLENWLPLDYLFDFVYLLDIIVRSRTGYLEQG--LLVKDTSKLRKHYVHSTQFKLD 80 (536)
T ss_pred EEEehHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhcC--eeehhhHHHHHHHHHhhhhhhh
Confidence 345678999999998888642 23458899999999999999999999999988 7999999999999998 67999
Q ss_pred HHhhccHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 007326 156 LFSCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLP 235 (608)
Q Consensus 156 ll~~lP~~~~~~~~~~~~~~~~l~llrl~rl~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~h~~ac~~~~~~~~~~ 235 (608)
++|++|+++.+...+.... .|++|++|+.|+..++.+.+.....+.. .++.+++.++++++||.||++|+++...+
T Consensus 81 ~l~liP~D~l~~~~~~~~~---~r~nRllk~yRl~~F~~rTetrT~~Pn~-fri~~lv~~~~ilfHWNaClYf~iS~~~g 156 (536)
T KOG0500|consen 81 VLSLIPLDLLLFKDGSASL---ERLNRLLKIYRLFEFFDRTETRTTYPNA-FRISKLVHYCLILFHWNACLYFLISKAIG 156 (536)
T ss_pred hhhhcchhHHhhcCCcchH---HHHHHHHHHHHHHHHHHHhccccCCchH-HHHHHHHHHHHHHHHHhhHHHHhhhHhcC
Confidence 9999999999877766444 4578888888889999988876665544 59999999999999999999999998765
Q ss_pred CCCCCcccccccccCCCCcccccccchHHHHHHHHHHHhhhhcccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007326 236 PEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMT 315 (608)
Q Consensus 236 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~ 315 (608)
...+ +|.... +.+..+......++..+|+.|+||+..|+||+| -...|.+..|.+|.++-.++|+++||.++|+++
T Consensus 157 ~~~d--~wvY~~-i~d~~~~~c~~~n~~ReY~~S~YWStLTlTTiG-e~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VG 232 (536)
T KOG0500|consen 157 FTTD--DWVYPK-INDPEFATCDAGNLTREYLYSLYWSTLTLTTIG-EQPPPVTSSEYAFVIVDTLIGVLIFATIVGNVG 232 (536)
T ss_pred cccc--ccccCC-ccCccccccchhHHHHHHHHHHHHHhhhhhhcc-CCCCCCcCchhhHHHHHHHHHHHHHhhhhccHh
Confidence 5444 365432 222222222234488999999999999999999 678899999999999999999999999999999
Q ss_pred HHHHc-CchhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcc--ccHHHHHhhCCHHHHHHHHHHHhHhhhccc
Q 007326 316 ALIVK-GSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESS--YTEASVLQDIPISIRAKISQTLYLPYIEKV 392 (608)
Q Consensus 316 ~~~~~-~~~~~~~~~~~~~~~~~m~~~~l~~~l~~~v~~y~~~~~~~~--~~~~~~l~~lp~~l~~~i~~~~~~~~l~~~ 392 (608)
+++++ +..+.+||++|+.+++||+.+++|..||.||.+||.|.|.++ .+|+++++.||+.|+.+|+.+++.+.|+++
T Consensus 233 smVtnmna~r~EFq~~mDGiK~YM~~RkV~~~lq~rVikwfdYlwa~~~~~DEeevl~~LP~kL~aeIA~nvh~dTLkkV 312 (536)
T KOG0500|consen 233 SMVTNMNAARTEFQAKMDGIKQYMRYRKVPKALQTRVIKWFDYLWAHKKIVDEEEVLKLLPDKLKAEIAINVHLDTLKKV 312 (536)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccccccHHHHHHhCCHHHHhHhHHHHHHHHHHhh
Confidence 99999 666899999999999999999999999999999999999654 679999999999999999999999999999
Q ss_pred ccccCCCHHHHHHHHHHcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecchhhhc---
Q 007326 393 PLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILC--- 469 (608)
Q Consensus 393 ~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~--- 469 (608)
++|+++.+.++.+|+.+++++.|.|||+|+++||.+.+||+|.+|.++++. +||.+ +...+.+|++|||++++.
T Consensus 313 ~iF~~ce~~lL~elVLklk~qvfSPgDyICrKGdvgkEMyIVk~G~L~Vv~--dDg~t-~~~~L~~G~~FGEisIlni~g 389 (536)
T KOG0500|consen 313 RIFQDCEAGLLVELVLKLKPQVFSPGDYICRKGDVGKEMYIVKEGKLAVVA--DDGVT-VFVTLKAGSVFGEISILNIKG 389 (536)
T ss_pred hHHHhcchhHHHHHHHHhcceeeCCCCeEEecCcccceEEEEEccEEEEEe--cCCcE-EEEEecCCceeeeeEEEEEcC
Confidence 999999999999999999999999999999999999999999999999986 56654 678999999999999875
Q ss_pred ---CCCcccEEEEeeceeeEEechhhHHHHHHHhhhcHHHHHH
Q 007326 470 ---NIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLT 509 (608)
Q Consensus 470 ---~~~~~~~~~a~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~ 509 (608)
|..|++++++++++.++.++++|+.+++++||+-...+.+
T Consensus 390 ~~~gNRRtanvrSvGYSDlfvLskdDl~~aL~eYP~a~~~L~~ 432 (536)
T KOG0500|consen 390 NKNGNRRTANVRSVGYSDLFVLSKDDLWEALSEYPDARKRLEE 432 (536)
T ss_pred cccCCcceeeeeeeccceeeEeeHHHHHHHHHhCCHHHHHHHH
Confidence 5678999999999999999999999999999988777763
No 4
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-63 Score=484.45 Aligned_cols=441 Identities=22% Similarity=0.397 Sum_probs=380.9
Q ss_pred cceEEcCCChhHHHHHHHHHHHHHHHHHHhhhhheeccCC--CcCeehHHHHHHHHHHHHHHhhceeeEEeCCCcEEeec
Q 007326 62 RNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGL--SKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICK 139 (608)
Q Consensus 62 ~~~~i~p~s~~~~~w~~~~~~~~~~~~~~~p~~~~f~~~~--~~~~~~~~~~~~~if~~d~~l~f~t~~~~~~~~~~i~~ 139 (608)
.+.+|--.+.|+.+|+++++++.+|+++.+|+.++|.... ...|..+|.++|+||.+||+++|+|.|+.++ |++|.|
T Consensus 206 pPHIiLHYcaFKt~WDWvIL~LTFYTAimVPyNvaFKnk~~~~vs~lvvDSiVDVIF~vDIvLNFHTTFVGPg-GEVvsd 284 (971)
T KOG0501|consen 206 PPHIILHYCAFKTIWDWVILILTFYTAIMVPYNVAFKNKQRNNVSWLVVDSIVDVIFFVDIVLNFHTTFVGPG-GEVVSD 284 (971)
T ss_pred CCeEEEeeehhhhHHHHHHHHHHHHHHheeeeeeeecccccCceeEEEecchhhhhhhhhhhhhcceeeecCC-CceecC
Confidence 3456666889999999999999999999999999998754 3358899999999999999999999999987 599999
Q ss_pred cHHHHHHHhhccchhHHHhhccHHHHHhhcCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 007326 140 RTPIALRYLRSSFIIDLFSCMPWDLIYKASGRK----EAVRYLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAV 215 (608)
Q Consensus 140 ~~~i~~~y~~~~f~iDll~~lP~~~~~~~~~~~----~~~~~l~llrl~rl~r~~~~~~~~~~~~~~~~~~~~~~~l~~~ 215 (608)
|+.|+.+|+|+||+||+++|+|++++..+.+.. +.+..|++.||+|+-|+.|-++.. +.|....++.+++.
T Consensus 285 PkvIRmNYlKsWFvIDLLSCLPYDi~naF~~~degI~SLFSaLKVVRLLRLGRVaRKLD~Y-----lEYGAA~LvLLlC~ 359 (971)
T KOG0501|consen 285 PKVIRMNYLKSWFVIDLLSCLPYDIFNAFERDDEGIGSLFSALKVVRLLRLGRVARKLDHY-----LEYGAAVLVLLLCV 359 (971)
T ss_pred hhHHhHHHHHHHHHHHHHhcccHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhhHHHHHHHHHH
Confidence 999999999999999999999999998765543 455667778888887777765543 23445567888899
Q ss_pred HHHHHHHHHHHHHHHhhcCCCC-----CCCccccccccc---CCCCcccc-----c-ccchHHHHHHHHHHHhhhhcccc
Q 007326 216 ELYCSHIAACIFYYLATTLPPE-----QEGYTWIGSLKM---GDYSYADF-----R-EIGFWKSYITSMYASVVTMTTVG 281 (608)
Q Consensus 216 ~~~~~h~~ac~~~~~~~~~~~~-----~~~~~w~~~~~~---~~~~~~~~-----~-~~~~~~~Y~~s~y~~~~t~ttvG 281 (608)
..++.||.||+||.++..+..+ ....+|+-.... ..|+|..- . ..+--..|+.|+||+++.|||||
T Consensus 360 y~lvAHWlACiWysIGd~ev~~~~~n~i~~dsWL~kLa~~~~tpY~~~~s~~~~~~gGPSr~S~YissLYfTMt~mttvG 439 (971)
T KOG0501|consen 360 YGLVAHWLACIWYSIGDYEVRDEMDNTIQPDSWLWKLANDIGTPYNYNLSNKGTLVGGPSRTSAYISSLYFTMTCMTTVG 439 (971)
T ss_pred HHHHHHHHHHhheeccchheecccccccccchHHHHHHhhcCCCceeccCCCceeecCCcccceehhhhhhhhhhhhccc
Confidence 9999999999999998754322 122478754432 23444311 1 12233579999999999999999
Q ss_pred cCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 007326 282 YGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK-GSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYE 360 (608)
Q Consensus 282 ygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~-~~~~~~~~~~~~~~~~~m~~~~l~~~l~~~v~~y~~~~~~ 360 (608)
||++.|.|..|++|++.+|++|.++||.++|+++.++++ .++..+|.+.++++.+||+-.++|+.|.+||.+|.--.|.
T Consensus 440 FGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~QQM~s~T~rYHeMlnnVReFlKL~evPK~LsERVMDYvVSTWa 519 (971)
T KOG0501|consen 440 FGNIAPNTDNEKIFGVCMMIIGALLYATIFGHVTTIIQQMTSNTNRYHEMLNNVREFLKLYEVPKGLSERVMDYVVSTWA 519 (971)
T ss_pred ccccCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999 7788999999999999999999999999999999999996
Q ss_pred --ccccHHHHHhhCCHHHHHHHHHHHhHhhhcccccccCCCHHHHHHHHHHcccccccCCCeEEccCCccCeEEEEEeeE
Q 007326 361 --SSYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGK 438 (608)
Q Consensus 361 --~~~~~~~~l~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~ 438 (608)
++.+.++++...|+.+|.+|+.+++++.+..+|.|+--++..+++|+..++..+..|||.|++.|+..|.++||++|+
T Consensus 520 MtkGiDTeKVL~~CPKDMkADICVHLNRKVFnEHpaFRLASDGCLRaLAm~f~~~H~APGDLlYHtGESvDaLcFvVsGS 599 (971)
T KOG0501|consen 520 MTKGIDTEKVLGYCPKDMKADICVHLNRKVFNEHPAFRLASDGCLRALAMEFQTNHCAPGDLLYHTGESVDALCFVVSGS 599 (971)
T ss_pred hhcCcCHHHHhhhCccccccceeeecchhhhccCcceeeccchhHHHHHHHHHhccCCCcceeeecCCccceEEEEEecc
Confidence 578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeccCCcceeeEeeCCCCeecchhhhcC--CCcccEEEEeeceeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007326 439 LEEVGIEENGTEDYVSYLHPNSSFGEVSILCN--IPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513 (608)
Q Consensus 439 v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~--~~~~~~~~a~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~l~~ 513 (608)
+++...+ .+++.++.||+||+.-.-.+ ....+.++|+++|.+..|.++.+.++++-|..++..+.+++..
T Consensus 600 LEVIQDD-----EVVAILGKGDVFGD~FWK~~t~~qs~ANVRALTYcDLH~IKrd~Ll~VLdFYtAFanSFaRNl~L 671 (971)
T KOG0501|consen 600 LEVIQDD-----EVVAILGKGDVFGDEFWKENTLGQSAANVRALTYCDLHMIKRDKLLKVLDFYTAFANSFARNLTL 671 (971)
T ss_pred eEEeecC-----cEEEEeecCccchhHHhhhhhhhhhhhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHhhhceee
Confidence 9998722 38899999999999854332 2345899999999999999999999999999988888887653
No 5
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=5e-58 Score=447.97 Aligned_cols=423 Identities=23% Similarity=0.440 Sum_probs=375.0
Q ss_pred ccccceEEcCCC-hhHHHHHHHHHHHHHHHHHHhhhhheeccCCCc---CeehHHHHHHHHHHHHHH-hhceeeEEeCCC
Q 007326 59 HFSRNLVFHPDN-RWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSK---NLYVLDIVGQIAFLFDIV-LQFCLAYRDSQT 133 (608)
Q Consensus 59 ~~~~~~~i~p~s-~~~~~w~~~~~~~~~~~~~~~p~~~~f~~~~~~---~~~~~~~~~~~if~~d~~-l~f~t~~~~~~~ 133 (608)
.....-.|+|.+ +++..|-.++.++..++++++|+..+|..+..+ .|++.|++||+|+++|++ ++-+..|...|
T Consensus 213 ~~~~~~sidp~~~r~Y~~WL~lVtlaf~~N~w~IPlR~sfPyQT~dN~~~Wli~Dy~cDiIYllDmlf~q~Rl~fvrgG- 291 (815)
T KOG0499|consen 213 RIKLPNSIDPYTDRLYLLWLLLVTLAFNWNCWFIPLRLSFPYQTADNIHYWLIADYICDIIYLLDMLFIQPRLQFVRGG- 291 (815)
T ss_pred hcCCCcccCcccchHHHHHHHHHHHHHhhceeEEeeeccCCccccccchhhhhHHHHhhHHHHHHHhhhhhhheeeeCc-
Confidence 334456789998 899999999999999999999999999876544 488999999999999985 45577777655
Q ss_pred cEEeeccHHHHHHHhhc-cchhHHHhhccHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 007326 134 YRLICKRTPIALRYLRS-SFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKL 212 (608)
Q Consensus 134 ~~~i~~~~~i~~~y~~~-~f~iDll~~lP~~~~~~~~~~~~~~~~l~llrl~rl~r~~~~~~~~~~~~~~~~~~~~~~~l 212 (608)
.+|.|.+..++||+++ .|-+|++|++|+++.+...|....+ |+.|.+++.-++.+++.+++.+.-. .+.++++.
T Consensus 292 -~~ik~kndtrk~Yl~sr~FklDllsiLPldllY~~~G~~p~w---R~~R~lK~~sF~e~~~~Le~i~s~~-y~~RV~rT 366 (815)
T KOG0499|consen 292 -DIIKDKNDTRKHYLTSRKFKLDLLSILPLDLLYLFFGFNPMW---RANRMLKYTSFFEFNHHLESIMSKA-YIYRVIRT 366 (815)
T ss_pred -eEEEechHHHHHHHHhhhhhhhHHhhhhHHHHHHHhccchhh---hhhhHHHHHHHHHHHHHHHHHhcch-hhhhhHHH
Confidence 7999999999999999 7999999999999999888866544 7777788777777788887766544 45699999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccCCCCcccccccchHHHHHHHHHHHhhhhcccccCCcccCChhh
Q 007326 213 IAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLRE 292 (608)
Q Consensus 213 ~~~~~~~~h~~ac~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~y~~~~t~ttvGygdi~p~~~~e 292 (608)
+.++++++|+.||+||..+...+-+ .+.|+.+. ....|+.|+|||+-|++|+| |...|+|..|
T Consensus 367 ~~YmlyilHinacvYY~~SayqglG--~~rWVydg--------------~Gn~YiRCyyfa~kt~~tiG-~~P~P~~~~E 429 (815)
T KOG0499|consen 367 TGYLLYILHINACVYYWASAYQGLG--TTRWVYDG--------------EGNEYIRCYYFAVKTLITIG-GLPEPQTLFE 429 (815)
T ss_pred HHHHHHHHhhhHHHHHHHHhhcccc--cceeEEcC--------------CCCceeeehhhHHHHHHHhc-CCCCcchHHH
Confidence 9999999999999999988765443 35677542 22468999999999999999 9999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhc--cccHHHHH
Q 007326 293 MVFIMIYVSFDMILGAYLIGNMTALIVK-GSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYES--SYTEASVL 369 (608)
Q Consensus 293 ~~~~~~~~~~g~~~~a~~i~~i~~~~~~-~~~~~~~~~~~~~~~~~m~~~~l~~~l~~~v~~y~~~~~~~--~~~~~~~l 369 (608)
.+|..+--+.|+++|+.+||++-.+++. ..+++.|+..|+....||++.+||+..|+||+.+|+|.|++ ..+|.+++
T Consensus 430 ~Vf~~~~w~mGVFvFslliGQmRDvi~aAt~nq~~fr~~mD~tl~ym~~~~i~kevqnRVr~WyeyTW~sQr~LDEs~ll 509 (815)
T KOG0499|consen 430 IVFQLLNWFMGVFVFSLLIGQMRDVIGAATANQNYFRACMDDTLAYMNNYSIPKEVQNRVRTWYEYTWDSQRMLDESDLL 509 (815)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhhhccccHHHHH
Confidence 9999999999999999999999999998 66788999999999999999999999999999999999975 46899999
Q ss_pred hhCCHHHHHHHHHHHhHhhhcccccccCCCHHHHHHHHHHcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCc
Q 007326 370 QDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGT 449 (608)
Q Consensus 370 ~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~ 449 (608)
+.||..||.++...++..++.++.+|++|+.+.+..++.+++.+.|.|||+|++.||.+.+||+|..|.|+|.. .++|
T Consensus 510 ~~LP~klq~dlAi~V~y~~lSKVqLFq~Cdr~mirDmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~GqvQVlG-Gp~~- 587 (815)
T KOG0499|consen 510 KTLPTKLQLDLAIDVNYSILSKVQLFQGCDRQMIRDMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHGQVQVLG-GPDG- 587 (815)
T ss_pred HhcchhheeeeeEEeehhhhhHHHHhhhhHHHHHHHHHHHhhceeecCCceeeecccccceeEEeecceEEEec-CCCC-
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999986 3444
Q ss_pred ceeeEeeCCCCeecchhhhc---CCCcccEEEEeeceeeEEechhhHHHHHHHhhhcHHH
Q 007326 450 EDYVSYLHPNSSFGEVSILC---NIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRK 506 (608)
Q Consensus 450 ~~~~~~l~~G~~fGe~~~~~---~~~~~~~~~a~~~~~l~~l~~~~~~~l~~~~~~~~~~ 506 (608)
+.++.++.+|++|||++++. |..|+++++|.+.|.++.++++++.+++..||+-...
T Consensus 588 ~~Vl~tL~~GsVFGEISLLaigG~nRRTAnV~a~Gf~nLfvL~KkdLneil~~YP~sq~i 647 (815)
T KOG0499|consen 588 TKVLVTLKAGSVFGEISLLAIGGGNRRTANVVAHGFANLFVLDKKDLNEILVHYPDSQRI 647 (815)
T ss_pred CEEEEEecccceeeeeeeeeecCCCccchhhhhcccceeeEecHhHHHHHHHhCccHHHH
Confidence 46899999999999999886 5567899999999999999999999999999965443
No 6
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.3e-30 Score=253.63 Aligned_cols=229 Identities=21% Similarity=0.279 Sum_probs=176.7
Q ss_pred CccccccceEEcCCCh-hHHHHHHHHHHHHHHHHHHhhhhh--eeccC-----------------CCcCeehHHHHHHHH
Q 007326 56 GFRHFSRNLVFHPDNR-WYRAWTKFILIWAVYSSIFTPVEF--GFFRG-----------------LSKNLYVLDIVGQIA 115 (608)
Q Consensus 56 ~~~~~~~~~~i~p~s~-~~~~w~~~~~~~~~~~~~~~p~~~--~f~~~-----------------~~~~~~~~~~~~~~i 115 (608)
+++.+.+..+.+|.|+ ..++..++-++.++.+++..-+.. .|... ....+.++|.+|.+|
T Consensus 173 ~~r~rlW~~~E~P~SS~~Ak~fa~~Sv~FVlvSiv~lcL~T~pe~q~~~~~~~~~~~~~~~~~~~~~p~l~~vE~vCi~W 252 (477)
T KOG3713|consen 173 RLRRRLWALLENPGSSLAAKVFAVLSVLFVLVSIVGLCLGTLPEFQVPDKQGEGLLVNVEKIESEPHPILTYVETVCIAW 252 (477)
T ss_pred hHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCHhhhchhhccccccccccccCCCCCCchHHHHHHHHHH
Confidence 3566677778889854 345544444444444433332211 22211 112378899999999
Q ss_pred HHHHHHhhceeeEEeCCCcEEeeccHHHHHHHhhccc-hhHHHhhccHHHHHhhc--Cc---------hhHHHHHHHHHH
Q 007326 116 FLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRSSF-IIDLFSCMPWDLIYKAS--GR---------KEAVRYLLWIRL 183 (608)
Q Consensus 116 f~~d~~l~f~t~~~~~~~~~~i~~~~~i~~~y~~~~f-~iDll~~lP~~~~~~~~--~~---------~~~~~~l~llrl 183 (608)
|.+|+++||..+ |.+ .+|+|++. +||++|++||++-+... +. ...+++||++|+
T Consensus 253 FT~E~llR~~~~------------P~k--~~F~k~pLNIIDllAIlPFYielll~~~~~~~~~~l~~~~~vvrvlR~lRI 318 (477)
T KOG3713|consen 253 FTFEYLLRFLVA------------PNK--LEFFKSPLNIIDLLAILPFYLELLLTLFGGESLKELENAGLVVRVLRVLRI 318 (477)
T ss_pred HHHHHHHHHHcC------------chH--HHHHhCcchHHHHHHHHHHHHHHHHHHhccchHHHHhhhhhhHHHHHHHHH
Confidence 999999997655 344 89999988 99999999999864322 11 146789999999
Q ss_pred HHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccCCCCcccccccch
Q 007326 184 YRVRKVSQFFHKMEKD-IRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGF 262 (608)
Q Consensus 184 ~rl~r~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~h~~ac~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 262 (608)
+|++|+.|++.+++.. ..+...+.++..+++++.+.+-+||.+.|++++.++.. +|.+++
T Consensus 319 ~RI~KLaRhS~GLr~lg~Tlr~S~~ElglLllfL~~GI~iFStlvY~~Ek~~~~~------------------~FtSIP- 379 (477)
T KOG3713|consen 319 LRIFKLARHSTGLRTLGLTLRRSYRELGLLLLFLAVGIVIFSTLVYFAEKDEPDT------------------KFTSIP- 379 (477)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC------------------CCcccc-
Confidence 9999999999999874 44566777899999999999999999999999876542 234444
Q ss_pred HHHHHHHHHHHhhhhcccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Q 007326 263 WKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKGS 322 (608)
Q Consensus 263 ~~~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~~~ 322 (608)
.|+|||++|||||||||++|.|+.||+++..+++.|+++.|++|..|.+-+....
T Consensus 380 -----a~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~~y 434 (477)
T KOG3713|consen 380 -----AGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITIIVNNFSMYY 434 (477)
T ss_pred -----chhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhHhhhHHHHH
Confidence 8999999999999999999999999999999999999999999999998887733
No 7
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=99.93 E-value=3.6e-26 Score=223.98 Aligned_cols=274 Identities=15% Similarity=0.153 Sum_probs=200.0
Q ss_pred ccccCccccccceEEcCCChhHHHHHHHHHHHHHHHHHHhhhhheecc--CCCcCeehHHHHHHHHHHHHHHhhceeeEE
Q 007326 52 SVLSGFRHFSRNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFR--GLSKNLYVLDIVGQIAFLFDIVLQFCLAYR 129 (608)
Q Consensus 52 ~~~~~~~~~~~~~~i~p~s~~~~~w~~~~~~~~~~~~~~~p~~~~f~~--~~~~~~~~~~~~~~~if~~d~~l~f~t~~~ 129 (608)
++.++.+...++++..|.+.-...+..+++++++.++++..+...-.. .....++++|++..++|.+|+++|.|.+-+
T Consensus 72 ~r~Rr~q~~vYN~LERPrGWkaf~YH~~VFllVl~CLILsV~STi~e~~~~a~~~L~~LEiv~IV~Fg~EfivRlWSAGC 151 (654)
T KOG1419|consen 72 ARYRRIQNKVYNFLERPRGWKAFLYHFFVFLLVLSCLILSVLSTIEEYEKLASGILYILEIVMIVFFGLEFIVRLWSAGC 151 (654)
T ss_pred HHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 445566788899999999998888888888887777776666432111 123458999999999999999999998754
Q ss_pred eCCCcEEeeccHHHHHHHhhccc-hhHHHhhccHHHHHhhcCc-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007326 130 DSQTYRLICKRTPIALRYLRSSF-IIDLFSCMPWDLIYKASGR-----KEAVRYLLWIRLYRVRKVSQFFHKMEKDIRIN 203 (608)
Q Consensus 130 ~~~~~~~i~~~~~i~~~y~~~~f-~iDll~~lP~~~~~~~~~~-----~~~~~~l~llrl~rl~r~~~~~~~~~~~~~~~ 203 (608)
... .-.+.-+.+|.+++| +||++.++....++.+... .+.++-||++.++|++|+.+-...|+-.-++.
T Consensus 152 ~~r-----YrG~~GRLrFarkp~cvIDiivi~Asi~vl~~g~qG~vfatSalrslRFlQILRmlr~DRrggTWKLLGSvV 226 (654)
T KOG1419|consen 152 CCR-----YRGWYGRLRFARKPFCVIDIIVIIASIAVLAAGSQGNVFATSALRSLRFLQILRMLRMDRRGGTWKLLGSVV 226 (654)
T ss_pred ccc-----cccceeeEEeecCCceEEEEeeeeeeeeEEEecCccceeehhhhhhhHHHHHHHHHHhhccCchhhhhhhhh
Confidence 332 111222478899988 9999877666544433311 34578899999999999988887777666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccCCCCcccccccchHHHHHHHHHHHhhhhcccccC
Q 007326 204 YMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYG 283 (608)
Q Consensus 204 ~~~~~~~~l~~~~~~~~h~~ac~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~y~~~~t~ttvGyg 283 (608)
+...+-+....++.+++.+++..+.|++..+..+++ ..+-+..|.+|+||+++|+||||||
T Consensus 227 ~aH~~ELiTt~YIGFL~LIfsSflVYLaEKd~~~e~-------------------~n~~F~TyADALWWG~ITltTIGYG 287 (654)
T KOG1419|consen 227 YAHSKELITTWYIGFLVLIFSSFLVYLAEKDAQGEG-------------------TNDEFPTYADALWWGVITLTTIGYG 287 (654)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc-------------------ccccchhHHHHHHhhheeEEeeccC
Confidence 777777788888889988888888887765433221 1234688999999999999999999
Q ss_pred CcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007326 284 DVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHL 355 (608)
Q Consensus 284 di~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~~m~~~~l~~~l~~~v~~y~ 355 (608)
|.+|+||.+++++.++.++|+.+||.+-|.+++-+.-...++..| ++|-++++.-..|.+-.=+||
T Consensus 288 Dk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALKVQeq~RQ------KHf~rrr~pAA~LIQc~WR~y 353 (654)
T KOG1419|consen 288 DKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALKVQEQHRQ------KHFNRRRNPAASLIQCAWRYY 353 (654)
T ss_pred CcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhhhHHHHHH------HHHHhhcchHHHHHHHHHHHH
Confidence 999999999999999999999999999999887554322222222 233345555555555554444
No 8
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=99.90 E-value=8.1e-25 Score=203.30 Aligned_cols=180 Identities=19% Similarity=0.332 Sum_probs=134.2
Q ss_pred cCeehHHHHHHHHHHHHHHhhceeeEEeCCCcEEeeccHHHHHHHhhccc-hhHHHhhccHHHHHhhc-------C---c
Q 007326 103 KNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRSSF-IIDLFSCMPWDLIYKAS-------G---R 171 (608)
Q Consensus 103 ~~~~~~~~~~~~if~~d~~l~f~t~~~~~~~~~~i~~~~~i~~~y~~~~f-~iDll~~lP~~~~~~~~-------~---~ 171 (608)
+.+++++.+|.+||.+++++||..+..+ .-|.|+-+ +||+++++|+.+.+... + .
T Consensus 253 dPFFiVEt~CIiWFtfEllvRf~aCPsK--------------~~Ff~nimNiIDiVaI~PyFitlgtela~q~g~g~~gq 318 (507)
T KOG1545|consen 253 DPFFIVETLCIIWFTFELLVRFFACPSK--------------ATFFRNIMNIIDIVAIIPYFITLGTELAEQQGGGGQGQ 318 (507)
T ss_pred CchHhHHHHHHHHHhHHHHHHHhcCccH--------------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCccch
Confidence 3578999999999999999999887552 45667755 99999999998866421 1 0
Q ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccc
Q 007326 172 ----KEAVRYLLWIRLYRVRKVSQFFHKMEKDIR-INYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGS 246 (608)
Q Consensus 172 ----~~~~~~l~llrl~rl~r~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~h~~ac~~~~~~~~~~~~~~~~~w~~~ 246 (608)
...+|++|+.|++|++|+.|+.+++.-.-+ +......+..+++++...+-+++...|+.+..+++
T Consensus 319 qaMSlAILRViRLVRVFRIFKLSRHSkGLQILGqTl~aSmrElgLLIFFlfIgviLFsSavYFAEade~~---------- 388 (507)
T KOG1545|consen 319 QAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLRASMRELGLLIFFLFIGVILFSSAVYFAEADEPE---------- 388 (507)
T ss_pred hhhhHHHHHHHHHHHHhhheeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeeeeecCCCc----------
Confidence 124566677777777777777777654322 23334456666666666666777777776554333
Q ss_pred cccCCCCcccccccchHHHHHHHHHHHhhhhcccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 007326 247 LKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK 320 (608)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~ 320 (608)
+++.+++ +|+|||++|||||||||..|.|..+|++..+|.+.|++..|+++-.|.+-+.-
T Consensus 389 --------S~F~SIP------daFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVIVsNFny 448 (507)
T KOG1545|consen 389 --------SHFSSIP------DAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVIVSNFNY 448 (507)
T ss_pred --------cCCCcCc------ccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEEEecccc
Confidence 3444555 99999999999999999999999999999999999999999988877664443
No 9
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=99.82 E-value=1.7e-22 Score=189.68 Aligned_cols=176 Identities=21% Similarity=0.318 Sum_probs=138.7
Q ss_pred cCeehHHHHHHHHHHHHHHhhceeeEEeCCCcEEeeccHHHHHHHhhccc-hhHHHhhccHHHHHhhcCchhH---HHHH
Q 007326 103 KNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRSSF-IIDLFSCMPWDLIYKASGRKEA---VRYL 178 (608)
Q Consensus 103 ~~~~~~~~~~~~if~~d~~l~f~t~~~~~~~~~~i~~~~~i~~~y~~~~f-~iDll~~lP~~~~~~~~~~~~~---~~~l 178 (608)
..++.+|..|.+||..++++|+..+. .+ .+|+|+-+ +||+++++|+++-+...++.+. +--|
T Consensus 227 ~aFFclDTACVmIFT~EYlLRL~aAP------------sR--~rF~RSvMSiIDVvAIlPYYigLv~t~N~DVSGaFVTL 292 (632)
T KOG4390|consen 227 VAFFCLDTACVMIFTGEYLLRLFAAP------------SR--YRFLRSVMSIIDVVAILPYYIGLVMTDNEDVSGAFVTL 292 (632)
T ss_pred eeeEEecceeEEEeeHHHHHHHHcCc------------hH--HHHHHHHHHHHHHhhhhhhheEEEecCCccccceeEEE
Confidence 34788999999999999999977653 33 88999966 9999999999987765554332 3346
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccCCCCcccc
Q 007326 179 LWIRLYRVRKVSQFFHKMEK-DIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADF 257 (608)
Q Consensus 179 ~llrl~rl~r~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~h~~ac~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 257 (608)
|++|++|+++..++..+++- .+.+......+..+++.+.+.+-+||.++||.++.... +.+
T Consensus 293 RVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLlFSLtMAIIIFATvMfYAEKg~~a------------------t~F 354 (632)
T KOG4390|consen 293 RVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLLFSLTMAIIIFATVMFYAEKGSSA------------------TKF 354 (632)
T ss_pred EeeeeeeeeeecccccccchhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccc------------------ccc
Confidence 77777788877777777664 24455566688888888888899999999998764221 222
Q ss_pred cccchHHHHHHHHHHHhhhhcccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007326 258 REIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTA 316 (608)
Q Consensus 258 ~~~~~~~~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~ 316 (608)
.+++ .|||++++||||.||||..|.|..+++|..++.+.|+++.|+++..|.+
T Consensus 355 TsIP------aaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvIVS 407 (632)
T KOG4390|consen 355 TSIP------AAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVIVS 407 (632)
T ss_pred ccCc------HhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccccEEEe
Confidence 3333 8999999999999999999999999999999999999999977655444
No 10
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.64 E-value=2.5e-15 Score=144.25 Aligned_cols=128 Identities=20% Similarity=0.256 Sum_probs=119.8
Q ss_pred HhhhcccccccCCCHHHHHHHHHHcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecch
Q 007326 386 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV 465 (608)
Q Consensus 386 ~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~ 465 (608)
.+.++.+++|+.+++++++.+....+.+.|++|++|+++|++++.+|+|.+|.++++... +|++.++..+.+|++||+.
T Consensus 6 ~~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~-~~~~~~i~~~~~g~~~g~~ 84 (236)
T PRK09392 6 LIRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASS-QDRETTLAILRPVSTFILA 84 (236)
T ss_pred HHHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcC-CCceEEEEEeCCCchhhhH
Confidence 357889999999999999999999999999999999999999999999999999999864 6677889999999999999
Q ss_pred hhhcCCCcccEEEEeeceeeEEechhhHHHHHHHhhhcHHHHHHHHhcc
Q 007326 466 SILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 514 (608)
Q Consensus 466 ~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~l~~~ 514 (608)
+++.+.++.+++.|.++|+++.++.++|.+++.++|.+...+++.+..+
T Consensus 85 ~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~~~~~~l~~~ 133 (236)
T PRK09392 85 AVVLDAPYLMSARTLTRSRVLMIPAELVREAMSEDPGFMRAVVFELAGC 133 (236)
T ss_pred HHhCCCCCceEEEEcCceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999888877653
No 11
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.60 E-value=9.7e-15 Score=145.81 Aligned_cols=212 Identities=17% Similarity=0.170 Sum_probs=161.8
Q ss_pred hHhhhcccccccCCCHHHHHHHHHHcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecc
Q 007326 385 YLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGE 464 (608)
Q Consensus 385 ~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe 464 (608)
..+++.++|+|+.++++++.+|...+..++|.+||+|+..|.+..++|+|.+|.|+++. .+|. ++..+..||.||.
T Consensus 5 ~~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~--~~g~--v~~~~~~gdlFg~ 80 (610)
T COG2905 5 PDQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRS--DGGE--VLDRLAAGDLFGF 80 (610)
T ss_pred HHHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEc--CCCe--eeeeeccCccccc
Confidence 35788999999999999999999999999999999999999999999999999999986 3443 8899999999999
Q ss_pred hhhhcCCCcccEEEEeeceeeEEechhhHHHHHHHhhhcHHHHHHHHhccccc-hhhhhhhhhcccccccchhhhhhhhh
Q 007326 465 VSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGKES-DLRLKQLQSDITFHISKHEAELALKV 543 (608)
Q Consensus 465 ~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~l~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~l 543 (608)
.++++..+....+.|.+++.+|.||++.|.++++++|.+...+..+++++.+. ..+.+.....-.............++
T Consensus 81 ~~l~~~~~~~~~~~aeedsl~y~lp~s~F~ql~~~n~~f~~ff~~~~akR~~~~~~~~~eq~~~e~~~trv~~~~~~~~~ 160 (610)
T COG2905 81 SSLFTELNKQRYMAAEEDSLCYLLPKSVFMQLMEENPEFADFFLRSLAKRLRDIADRLAEQGESEFILTRVGEVKTLPAV 160 (610)
T ss_pred hhhcccCCCcceeEeeccceEEecCHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhcCCCc
Confidence 99999888888899999999999999999999999999999999888886542 22222210011111122334445566
Q ss_pred hhhhhcCCHHHHHHHHHcCCCC-CCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCC
Q 007326 544 NSAAYHGDLYQLEGLIRAGADP-NRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNS 604 (608)
Q Consensus 544 ~~aa~~g~~~~~~~Ll~~gad~-~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~ 604 (608)
.+.......++++.+.+.|++. ...+.+| .++.. .-..+++...+..|-+...+-..
T Consensus 161 ~v~~~~~i~~aa~km~~~gv~s~v~l~~~~-~~~GI---vT~~dl~~~v~~~g~~~~~~V~e 218 (610)
T COG2905 161 TVSPQASIQDAARKMKDEGVSSLVVLDDSG-PLLGI---VTRKDLRSRVIADGRSKTQKVSE 218 (610)
T ss_pred ccCccCcHHHHHHHHHhcCCCeEEEEcCCC-Cccce---eehHHHHHHHHhcCCCcccchhh
Confidence 6677778888999999999883 2223222 22332 23447777777777666554433
No 12
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.59 E-value=1.2e-14 Score=122.54 Aligned_cols=114 Identities=32% Similarity=0.550 Sum_probs=107.8
Q ss_pred cccCCCHHHHHHHHHHcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecchhhhcCCCc
Q 007326 394 LFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQ 473 (608)
Q Consensus 394 ~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~ 473 (608)
+|+.++++.+..+...++.+.+.+|++|+.+|++.+.+|+|.+|.++++..+.+|++..+..+.+|++||+..++.+.++
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~ 80 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGELALLGNGPR 80 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcChHHHhcCCCC
Confidence 47899999999999999999999999999999999999999999999999888898899999999999999999988899
Q ss_pred ccEEEEeeceeeEEechhhHHHHHHHhhhcHHHH
Q 007326 474 PYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKV 507 (608)
Q Consensus 474 ~~~~~a~~~~~l~~l~~~~~~~l~~~~~~~~~~~ 507 (608)
..+++|.++|.++.++.++|.++++++|.+...+
T Consensus 81 ~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 114 (115)
T cd00038 81 SATVRALTDSELLVLPRSDFRRLLQEYPELARRL 114 (115)
T ss_pred CceEEEcCceEEEEEeHHHHHHHHHHCcHhHHhc
Confidence 9999999999999999999999999999877654
No 13
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.58 E-value=2.3e-14 Score=135.19 Aligned_cols=119 Identities=16% Similarity=0.260 Sum_probs=111.1
Q ss_pred cCCCHHHHHHHHHHcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecchhhhcCC-Ccc
Q 007326 396 KGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNI-PQP 474 (608)
Q Consensus 396 ~~l~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~-~~~ 474 (608)
+.++++.++.+...++.+.|++|++|+.+|++.+.+|+|.+|.++++..+.+|++..+..+++|++||+.+++.+. ++.
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~~ 85 (211)
T PRK11753 6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERS 85 (211)
T ss_pred CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehhhccCCCCce
Confidence 4689999999999999999999999999999999999999999999998889999999999999999999988764 678
Q ss_pred cEEEEeeceeeEEechhhHHHHHHHhhhcHHHHHHHHhcc
Q 007326 475 YTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 514 (608)
Q Consensus 475 ~~~~a~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~l~~~ 514 (608)
++++|.++|+++.++.++|.++++.+|++...+++.+.++
T Consensus 86 ~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~ 125 (211)
T PRK11753 86 AWVRAKTACEVAEISYKKFRQLIQVNPDILMALSAQMARR 125 (211)
T ss_pred EEEEEcCcEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999998888877663
No 14
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.56 E-value=1.6e-14 Score=135.08 Aligned_cols=187 Identities=24% Similarity=0.343 Sum_probs=128.9
Q ss_pred hHHHHHHHHHHHHHHhhceeeEEeCCCcEEeeccHHHHHHHhhccc-hhHHHhhccHHHHHhhcC--ch---hHHHHHHH
Q 007326 107 VLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRSSF-IIDLFSCMPWDLIYKASG--RK---EAVRYLLW 180 (608)
Q Consensus 107 ~~~~~~~~if~~d~~l~f~t~~~~~~~~~~i~~~~~i~~~y~~~~f-~iDll~~lP~~~~~~~~~--~~---~~~~~l~l 180 (608)
++|.+++++|++|+++++++.... +++|+++++ ++|+++++|..+...... .. ...+.+++
T Consensus 1 ~~~~~~~~~f~~e~~l~~~~~~~~-------------~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (200)
T PF00520_consen 1 ILEIIFDVIFILEIVLRFFALGFK-------------RRRYFRSWWNWFDFISVIPSIVSVILRSYGSASAQSLLRIFRL 67 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCG--------------GCCCCSHHHHHHHHHHHHHCCHHCCHCSS--HHCHCHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHhccH-------------HHHHhcChhhcccccccccccccccccccccccccceEEEEEe
Confidence 478999999999999999876442 488999854 899999999965543221 11 23556666
Q ss_pred HHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccCCCCcccccc
Q 007326 181 IRLYRVRKVSQFFHKMEKDI-RINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFRE 259 (608)
Q Consensus 181 lrl~rl~r~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~h~~ac~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 259 (608)
+|++|+.|+.+.++.+.... .......++.+++..+++++|++||+++.+...........++. .......
T Consensus 68 l~~~R~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~~~~~--------~~~~~~~ 139 (200)
T PF00520_consen 68 LRLLRLLRLLRRFRSLRRLLRALIRSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCCDPTWD--------SENDIYG 139 (200)
T ss_dssp HHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-------SS------------SST
T ss_pred eccccccccccccccccccccccccccccccccccccccccccccchhheecccccccccccccc--------ccccccc
Confidence 66666666666555444432 22345567888899999999999999998876543221111100 0012223
Q ss_pred cchHHHHHHHHHHHhhhhcccccCCcccC-----ChhhHHHH-HHHHHHHHHHHHHHHHHH
Q 007326 260 IGFWKSYITSMYASVVTMTTVGYGDVHAV-----NLREMVFI-MIYVSFDMILGAYLIGNM 314 (608)
Q Consensus 260 ~~~~~~Y~~s~y~~~~t~ttvGygdi~p~-----~~~e~~~~-~~~~~~g~~~~a~~i~~i 314 (608)
.+.+++|..|+||++.++||.|+||..|. +..+.++. ++..+.+++++++++|.+
T Consensus 140 ~~~f~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 140 YENFDSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp HHHHSSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 35567899999999999999999999997 88899988 666666668888888764
No 15
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.54 E-value=3.9e-14 Score=113.94 Aligned_cols=90 Identities=29% Similarity=0.569 Sum_probs=86.7
Q ss_pred ccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecchhhhcCCCcccEEEEeeceeeEEechhh
Q 007326 413 EFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQS 492 (608)
Q Consensus 413 ~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~~~ 492 (608)
+.|++|++|+++|++.+++|+|++|.++++..+.+|+..++..+.+|++||+.+++.+.++..+++|.++|+++.+|+++
T Consensus 2 ~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~i~~~~ 81 (91)
T PF00027_consen 2 KTYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFGEIELLTGKPSPFTVIALTDSEVLRIPRED 81 (91)
T ss_dssp EEESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEESGHHHHHTSBBSSEEEESSSEEEEEEEHHH
T ss_pred eEECCCCEEEeCCCcCCEEEEEEECceEEEeceecceeeeecceeeeccccceeecCCCccEEEEEEccCEEEEEEeHHH
Confidence 67999999999999999999999999999999999988889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhh
Q 007326 493 FTNIIDIYFC 502 (608)
Q Consensus 493 ~~~l~~~~~~ 502 (608)
|.++++++|+
T Consensus 82 ~~~~~~~~p~ 91 (91)
T PF00027_consen 82 FLQLLQQDPE 91 (91)
T ss_dssp HHHHHHHSHH
T ss_pred HHHHHHhCcC
Confidence 9999999985
No 16
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.53 E-value=4.2e-14 Score=134.48 Aligned_cols=111 Identities=17% Similarity=0.208 Sum_probs=104.2
Q ss_pred HHHHHHcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecchhhhcCCCcccEEEEeece
Q 007326 404 NQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELC 483 (608)
Q Consensus 404 ~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~ 483 (608)
.++....+.+.|++|++|+++|++.+.+|+|.+|.|+++..+.+|++.++..+.||++||+.+++.+.++++++.|.++|
T Consensus 25 ~~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~~~~~~~~~~~~~~A~~~~ 104 (226)
T PRK10402 25 FDVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEIELIDKDHETKAVQAIEEC 104 (226)
T ss_pred HHHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEeehhhcCCCCCccEEEeccE
Confidence 35777888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEechhhHHHHHHHhhhcHHHHHHHHhcc
Q 007326 484 RLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 514 (608)
Q Consensus 484 ~l~~l~~~~~~~l~~~~~~~~~~~~~~l~~~ 514 (608)
+++.++.++|.+++..+|.+...+++.+..+
T Consensus 105 ~i~~i~~~~~~~ll~~~p~~~~~~~~~l~~~ 135 (226)
T PRK10402 105 WCLALPMKDCRPLLLNDALFLRKLCKFLSHK 135 (226)
T ss_pred EEEEEEHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 9999999999999999999999888877763
No 17
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.53 E-value=1.5e-13 Score=116.61 Aligned_cols=116 Identities=28% Similarity=0.421 Sum_probs=106.3
Q ss_pred cccCCCHHHHHHHHHHcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecchhhh--cCC
Q 007326 394 LFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSIL--CNI 471 (608)
Q Consensus 394 ~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~--~~~ 471 (608)
+|.+++++.++.++..++.+.+++|++|+++|++.+.+|+|.+|.++++..+.+|++..+..+.+|++||+..++ ...
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~ 80 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGELALLTNSRR 80 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceechhhhccCCCc
Confidence 578999999999999999999999999999999999999999999999998888999899999999999999988 345
Q ss_pred CcccEEEEeeceeeEEechhhHHHHHHHhhhcHHHHHH
Q 007326 472 PQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLT 509 (608)
Q Consensus 472 ~~~~~~~a~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~ 509 (608)
+...++.+.++|.++.++.+.+...+..++.+..+++.
T Consensus 81 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 118 (120)
T smart00100 81 AASATAVALELATLLRIDFRDFLQLLQENPQLLLELLL 118 (120)
T ss_pred ccceEEEEEeeEEEEccCHHHHHHHHHHhHHHHHHHHh
Confidence 77889999999999999999999999998877665543
No 18
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.50 E-value=2.2e-13 Score=128.82 Aligned_cols=126 Identities=22% Similarity=0.352 Sum_probs=115.6
Q ss_pred cccccccCCCHHHHHHHHHHcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecchhhhc
Q 007326 390 EKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILC 469 (608)
Q Consensus 390 ~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~ 469 (608)
...+.|..++++....+......+.+++|++|+.+|++++.+|+|.+|.++++....+|++.++..+++|++||+.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~l~~ 82 (214)
T COG0664 3 KENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELALLG 82 (214)
T ss_pred ccccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHHHhc
Confidence 45667777888888888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccEEEEeeceeeEEechhhHHHHHHHhhhcHHHHHHHHhccc
Q 007326 470 NIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGK 515 (608)
Q Consensus 470 ~~~~~~~~~a~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~l~~~~ 515 (608)
+.|++++++|.++|+++.++++.|.+++..+|.+...++..+.++.
T Consensus 83 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~~~~~l 128 (214)
T COG0664 83 GDPRSASAVALTDVEVLEIPRKDFLELLAESPKLALALLRLLARRL 128 (214)
T ss_pred CCCccceEEEcceEEEEEecHHHHHHHHhhCcHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999888888888888887744
No 19
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.49 E-value=2.9e-13 Score=129.89 Aligned_cols=125 Identities=14% Similarity=0.160 Sum_probs=111.5
Q ss_pred hcccccccCCCHHHHHHHHHHccc-ccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecchhh
Q 007326 389 IEKVPLFKGCSSEFINQIVIRLHE-EFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSI 467 (608)
Q Consensus 389 l~~~~~f~~l~~~~l~~l~~~~~~-~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~ 467 (608)
+++.+.|..+++++++.|....+. ..|++|++|+++||+.+++|+|.+|.|+++..+.+|++.++..+.||++||+.++
T Consensus 15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~~~~ 94 (235)
T PRK11161 15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFDAI 94 (235)
T ss_pred ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEEEEeccCCceeccccc
Confidence 555666667999999999988764 6799999999999999999999999999999999999999999999999999876
Q ss_pred hcCCCcccEEEEeeceeeEEechhhHHHHHHHhhhcHHHHHHHHhcc
Q 007326 468 LCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 514 (608)
Q Consensus 468 ~~~~~~~~~~~a~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~l~~~ 514 (608)
+. .+.+.++.|.++|+++.+|++.|.+++.++|++...+++.+..+
T Consensus 95 ~~-~~~~~~~~a~~~~~i~~ip~~~f~~l~~~~p~~~~~~~~~~~~~ 140 (235)
T PRK11161 95 GS-GQHPSFAQALETSMVCEIPFETLDDLSGKMPKLRQQIMRLMSGE 140 (235)
T ss_pred cC-CCCcceEEEeccEEEEEEEHHHHHHHHHHChHHHHHHHHHHHHH
Confidence 54 45567899999999999999999999999999999988887763
No 20
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=99.45 E-value=1.9e-13 Score=128.93 Aligned_cols=127 Identities=28% Similarity=0.421 Sum_probs=116.3
Q ss_pred HhHhhhcccccccCCCHHHHHHHHHHcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeec
Q 007326 384 LYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 463 (608)
Q Consensus 384 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 463 (608)
...+.+++.-+|++++++.+..+..++.++.+++|+.|++||+.++.+|+|.+|+++++. .| ..+..+.||..||
T Consensus 119 ~L~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv---~~--~~v~~~~~g~sFG 193 (368)
T KOG1113|consen 119 RLEEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYV---NG--TYVTTYSPGGSFG 193 (368)
T ss_pred HHHHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEE---CC--eEEeeeCCCCchh
Confidence 345778888999999999999999999999999999999999999999999999999998 23 2678999999999
Q ss_pred chhhhcCCCcccEEEEeeceeeEEechhhHHHHHHHhhhcHHHHHHHHhccc
Q 007326 464 EVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGK 515 (608)
Q Consensus 464 e~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~l~~~~ 515 (608)
|.+++.+.||.+|+.|.+++.+|.+++..|..++-.+..-.++++..+++..
T Consensus 194 ElALmyn~PRaATv~a~t~~klWgldr~SFrrIi~~s~~kkrkMy~~~l~s~ 245 (368)
T KOG1113|consen 194 ELALMYNPPRAATVVAKSLKKLWGLDRTSFRRIIMKSCIKKRKMYEPFLESV 245 (368)
T ss_pred hhHhhhCCCcccceeeccccceEEEeeceeEEEeeccchhhhhhhhhhhhcc
Confidence 9999999999999999999999999999999999888877788887777754
No 21
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.45 E-value=4e-14 Score=139.99 Aligned_cols=221 Identities=20% Similarity=0.265 Sum_probs=144.0
Q ss_pred EEcCCChhHHHHHHHHHHHHHHHHHHhhhhheeccCC------CcCeehHHHHHHHHHHHHHHhhceeeEEeCCCcEEee
Q 007326 65 VFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGL------SKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLIC 138 (608)
Q Consensus 65 ~i~p~s~~~~~w~~~~~~~~~~~~~~~p~~~~f~~~~------~~~~~~~~~~~~~if~~d~~l~f~t~~~~~~~~~~i~ 138 (608)
+|+-++.-.++-.++++++.+-++++..+..++.... .+.-..+|+.+.++|++-+++||..+-..-
T Consensus 118 lisgqtltgr~lvvlvfilsigsliiyf~das~~~ve~cq~w~~~~tqqidlafnifflvyffirfiaasdkl------- 190 (1103)
T KOG1420|consen 118 LISGQTLTGRVLVVLVFILSIGSLIIYFIDASNPIVETCQNWYKDFTQQIDLAFNIFFLVYFFIRFIAASDKL------- 190 (1103)
T ss_pred eeecccccceeeehhHHHHhhhceEEEEEcCCChHHHhhhhhhhChHHHhhhHhhHHHHHHHHHHHhhcccce-------
Confidence 4555554445544445555555444443333332110 112346899999999999999998764310
Q ss_pred ccHHHHHHHhhccchhHHHhhccHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 007326 139 KRTPIALRYLRSSFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELY 218 (608)
Q Consensus 139 ~~~~i~~~y~~~~f~iDll~~lP~~~~~~~~~~~~~~~~l~llrl~rl~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 218 (608)
+-++.-.-++|.+++-|.++..-...+.-.+|+||-+|+..+..+.+|++.++.... .++.+++..++-
T Consensus 191 ------wf~lemys~vdfftippsfvsiyl~r~wlglrflralrlmtvpdilqylnilktsss-----irl~qlvsifis 259 (1103)
T KOG1420|consen 191 ------WFWLEMYSVVDFFTIPPSFVSIYLNRSWLGLRFLRALRLMTVPDILQYLNILKTSSS-----IRLVQLVSIFIS 259 (1103)
T ss_pred ------eeeeehhhheeeeecCchheEEEeccchHHHHHHHHHHhccHHHHHHHHHHHhccch-----hhHHHHHHHHHH
Confidence 111111226777777776554333333445778888888888888888776654322 256666655555
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCcccccccccCCCCcccccccchHHHHHHHHHHHhhhhcccccCCcccCChhhHHHHHH
Q 007326 219 CSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMI 298 (608)
Q Consensus 219 ~~h~~ac~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~ 298 (608)
+....|.+.++++.. +..|- ++.+ +....|+.|.||.++||+||||||++..|..+++|.++
T Consensus 260 vwltaag~ihllens------gdp~~-----------~f~n-~hrltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvf 321 (1103)
T KOG1420|consen 260 VWLTAAGFIHLLENS------GDPWE-----------NFQN-NHRLTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVF 321 (1103)
T ss_pred HHHhhcceeehhhcC------CChhH-----------hccC-cccchhhheeeeeEEEeeeccccceeehhhhhHHHHHH
Confidence 555566666665432 11221 1111 22457999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcC
Q 007326 299 YVSFDMILGAYLIGNMTALIVKG 321 (608)
Q Consensus 299 ~~~~g~~~~a~~i~~i~~~~~~~ 321 (608)
+++.|..+||-.+..|..++.+.
T Consensus 322 fil~glamfasyvpeiielignr 344 (1103)
T KOG1420|consen 322 FILGGLAMFASYVPEIIELIGNR 344 (1103)
T ss_pred HHHHHHHHHHhhhHHHHHHHccc
Confidence 99999999999999999999873
No 22
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.38 E-value=4.4e-13 Score=132.12 Aligned_cols=118 Identities=23% Similarity=0.301 Sum_probs=109.5
Q ss_pred HHHHHhHhhhcccccccCCCHHHHHHHHHHcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCC
Q 007326 380 ISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPN 459 (608)
Q Consensus 380 i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G 459 (608)
-..++..+.++...++++++++++++++.+|.+..|.+|++|+++||+++++|++.+|.++|.. +|+ .+..+++|
T Consensus 147 ~~k~lI~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~---~g~--ll~~m~~g 221 (732)
T KOG0614|consen 147 GAKQLIRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSR---EGK--LLGKMGAG 221 (732)
T ss_pred cHHHHHHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEee---CCe--eeeccCCc
Confidence 3456778889999999999999999999999999999999999999999999999999999986 443 78999999
Q ss_pred CeecchhhhcCCCcccEEEEeeceeeEEechhhHHHHHHHhhh
Q 007326 460 SSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFC 502 (608)
Q Consensus 460 ~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~l~~~~~~ 502 (608)
..|||.+++.+.+|+++++|++++.+|.|+|+.|..++.....
T Consensus 222 tvFGELAILynctRtAsV~alt~~~lWaidR~vFq~IM~~tg~ 264 (732)
T KOG0614|consen 222 TVFGELAILYNCTRTASVRALTDVRLWAIDREVFQAIMMRTGL 264 (732)
T ss_pred hhhhHHHHHhCCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999977543
No 23
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.37 E-value=4.8e-12 Score=98.04 Aligned_cols=55 Identities=33% Similarity=0.617 Sum_probs=49.0
Q ss_pred HHHHHHHHHhhhhcccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007326 265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIV 319 (608)
Q Consensus 265 ~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~ 319 (608)
+|.+|+||+++|+||+||||+.|.+..+|+++++.+++|+.++++.++.+++.+.
T Consensus 24 ~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 24 SFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp SHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4679999999999999999999999999999999999999999999999988765
No 24
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.36 E-value=1.1e-12 Score=129.27 Aligned_cols=122 Identities=22% Similarity=0.375 Sum_probs=111.0
Q ss_pred HHhHhhhcccccccCCCHHHHHHHHHHcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccC-CcceeeEeeCCCCe
Q 007326 383 TLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEEN-GTEDYVSYLHPNSS 461 (608)
Q Consensus 383 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~-g~~~~~~~l~~G~~ 461 (608)
+.+.++|+.+|+|.+++++.+..++..++...|..|++|+++|+.++.+|+|.+|.|.+...++. +.+..+..+..||+
T Consensus 268 ~~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~kGd~ 347 (732)
T KOG0614|consen 268 EQYMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLNKGDY 347 (732)
T ss_pred HHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCCCchhHHhhccccch
Confidence 44578899999999999999999999999999999999999999999999999999999986654 56678899999999
Q ss_pred ecchhhhcCCCcccEEEEeec-eeeEEechhhHHHHHHHhhhcH
Q 007326 462 FGEVSILCNIPQPYTVQVCEL-CRLLRIDKQSFTNIIDIYFCDG 504 (608)
Q Consensus 462 fGe~~~~~~~~~~~~~~a~~~-~~l~~l~~~~~~~l~~~~~~~~ 504 (608)
|||.+++....|++++.|..+ ++|+.|+++.|..++-...++.
T Consensus 348 FGE~al~~edvRtAniia~~~gv~cl~lDresF~~liG~l~~l~ 391 (732)
T KOG0614|consen 348 FGERALLGEDVRTANIIAQAPGVECLTLDRESFKKLIGDLEELK 391 (732)
T ss_pred hhHHHhhccCccchhhhccCCCceEEEecHHHHHHhcccHHHhh
Confidence 999999999999999999888 9999999999999887665544
No 25
>PLN02868 acyl-CoA thioesterase family protein
Probab=99.35 E-value=4.3e-12 Score=131.41 Aligned_cols=113 Identities=19% Similarity=0.232 Sum_probs=104.3
Q ss_pred HhhhcccccccCCCHHHHHHHHHHcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecch
Q 007326 386 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV 465 (608)
Q Consensus 386 ~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~ 465 (608)
.+.++++++|+++++++++.+...++.+.|++|++|+++|+..+.+|+|.+|.|+++..+.+| +.++..+++|++||+.
T Consensus 7 ~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~g-e~~l~~l~~Gd~fG~~ 85 (413)
T PLN02868 7 VEFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEE-SRPEFLLKRYDYFGYG 85 (413)
T ss_pred HHHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCC-cEEEEEeCCCCEeehh
Confidence 456889999999999999999999999999999999999999999999999999999988777 6788899999999985
Q ss_pred hhhcCCCcccEEEEeeceeeEEechhhHHHHHHHhh
Q 007326 466 SILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYF 501 (608)
Q Consensus 466 ~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~l~~~~~ 501 (608)
+.+.++.++++|.++|+++.++++.|..+....+
T Consensus 86 --l~~~~~~~~~~A~~d~~v~~ip~~~~~~~~~~~~ 119 (413)
T PLN02868 86 --LSGSVHSADVVAVSELTCLVLPHEHCHLLSPKSI 119 (413)
T ss_pred --hCCCCcccEEEECCCEEEEEEcHHHHhhhccccc
Confidence 6788899999999999999999999998876654
No 26
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=99.34 E-value=5.1e-12 Score=117.39 Aligned_cols=97 Identities=23% Similarity=0.287 Sum_probs=90.4
Q ss_pred CCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecchhhhcCCCc--ccEEEEeeceeeEEechhhHHH
Q 007326 418 GEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQ--PYTVQVCELCRLLRIDKQSFTN 495 (608)
Q Consensus 418 g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~--~~~~~a~~~~~l~~l~~~~~~~ 495 (608)
|+.|+++||+.+++|+|.+|.|+++..+++|++.++..++||++||+.+++.+.+. .+++.|.++|+++.+|+++|.+
T Consensus 1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G~~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~ 80 (193)
T TIGR03697 1 GKTIFFPGDPAEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFGVLSLITGHRSDRFYHAVAFTRVELLAVPIEQVEK 80 (193)
T ss_pred CCceecCCCCCCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEeeeeeeccCCCCccceEEEEecceEEEEeeHHHHHH
Confidence 78999999999999999999999999999999999999999999999999887654 4789999999999999999999
Q ss_pred HHHHhhhcHHHHHHHHhcc
Q 007326 496 IIDIYFCDGRKVLTNLLQG 514 (608)
Q Consensus 496 l~~~~~~~~~~~~~~l~~~ 514 (608)
++.++|.+...+++.+.++
T Consensus 81 l~~~~p~l~~~~~~~l~~~ 99 (193)
T TIGR03697 81 AIEEDPDLSMLLLQGLSSR 99 (193)
T ss_pred HHHHChHHHHHHHHHHHHH
Confidence 9999999999999888763
No 27
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=99.32 E-value=8.2e-12 Score=118.95 Aligned_cols=106 Identities=18% Similarity=0.206 Sum_probs=96.9
Q ss_pred HHHHcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecchhhhcCCCcccEEEEeeceee
Q 007326 406 IVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRL 485 (608)
Q Consensus 406 l~~~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l 485 (608)
+....+.+.|++|++|+.+||+++++|+|.+|.|+++..+.+|++.++..+.+|++||+. .+.++.++++|+++|.+
T Consensus 34 ~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~---~~~~~~~~~~A~~ds~v 110 (230)
T PRK09391 34 AGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLE---SGSTHRFTAEAIVDTTV 110 (230)
T ss_pred ccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceeccc---CCCcCCeEEEEcCceEE
Confidence 445678899999999999999999999999999999999999999999999999999964 46678899999999999
Q ss_pred EEechhhHHHHHHHhhhcHHHHHHHHhcc
Q 007326 486 LRIDKQSFTNIIDIYFCDGRKVLTNLLQG 514 (608)
Q Consensus 486 ~~l~~~~~~~l~~~~~~~~~~~~~~l~~~ 514 (608)
+.++.++|.+++..+|++...+++.+.++
T Consensus 111 ~~i~~~~f~~l~~~~p~l~~~l~~~l~~~ 139 (230)
T PRK09391 111 RLIKRRSLEQAAATDVDVARALLSLTAGG 139 (230)
T ss_pred EEEEHHHHHHHHhhChHHHHHHHHHHHHH
Confidence 99999999999999999999998887763
No 28
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.27 E-value=3.8e-09 Score=119.45 Aligned_cols=80 Identities=15% Similarity=0.147 Sum_probs=68.7
Q ss_pred cccccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHH----------------------------
Q 007326 529 TFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAA---------------------------- 580 (608)
Q Consensus 529 ~~~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~---------------------------- 580 (608)
..+.+..+..+.+++|.|+..|+.++++.|+++|+++|.+|..|+||||.|+
T Consensus 548 G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~~~~~~~L~ 627 (823)
T PLN03192 548 KLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDPHAAGDLLC 627 (823)
T ss_pred CCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCcccCchHHH
Confidence 3455667778899999999999999999999999999999999999988554
Q ss_pred ---hcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 581 ---SRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 581 ---~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
..|+.+++++|+++|+|+|.+|.+|+|+
T Consensus 628 ~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~Tp 658 (823)
T PLN03192 628 TAAKRNDLTAMKELLKQGLNVDSEDHQGATA 658 (823)
T ss_pred HHHHhCCHHHHHHHHHCCCCCCCCCCCCCCH
Confidence 4555666777889999999999999984
No 29
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=99.24 E-value=3.9e-11 Score=112.28 Aligned_cols=98 Identities=20% Similarity=0.318 Sum_probs=85.4
Q ss_pred HcccccccCCCeEEccCC--ccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecchhhhcCCCcccEEEEeeceeeE
Q 007326 409 RLHEEFFLPGEVIMEKGN--VVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLL 486 (608)
Q Consensus 409 ~~~~~~~~~g~~I~~~g~--~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~ 486 (608)
..+...|++|++|+++|| +.+.+|+|.+|.|+++..+.+|++.++..+.||++||+.+++ +.++++++.|.++|+++
T Consensus 5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~~~~-~~~~~~~~~A~~~~~v~ 83 (202)
T PRK13918 5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEEALA-GAERAYFAEAVTDSRID 83 (202)
T ss_pred ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechHHhc-CCCCCceEEEcCceEEE
Confidence 456788999999999999 779999999999999999999999999999999999997664 67888999999999999
Q ss_pred EechhhHHHHHHHhhhcHHHHHHHHhc
Q 007326 487 RIDKQSFTNIIDIYFCDGRKVLTNLLQ 513 (608)
Q Consensus 487 ~l~~~~~~~l~~~~~~~~~~~~~~l~~ 513 (608)
.++.+.| +|.+...++..+..
T Consensus 84 ~i~~~~~------~~~~~~~l~~~l~~ 104 (202)
T PRK13918 84 VLNPALM------SAEDNLVLTQHLVR 104 (202)
T ss_pred EEEHHHc------ChhhHHHHHHHHHH
Confidence 9999887 45556666666554
No 30
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=99.20 E-value=2.3e-11 Score=102.74 Aligned_cols=84 Identities=26% Similarity=0.433 Sum_probs=76.7
Q ss_pred hhhcccccccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCC
Q 007326 524 LQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603 (608)
Q Consensus 524 l~~~~~~~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~ 603 (608)
+.....-+++..+.+..+++|.|++.|+.++++.|+..||+++.+...||||||-||..++.+++.+|+++|||||+.+.
T Consensus 82 lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~va~~LLqhgaDVnA~t~ 161 (228)
T KOG0512|consen 82 LLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEVAGRLLQHGADVNAQTK 161 (228)
T ss_pred HHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhHHHHHHhccCccccccc
Confidence 33444557888899999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCC
Q 007326 604 SIMQ 607 (608)
Q Consensus 604 ~g~t 607 (608)
..+|
T Consensus 162 g~lt 165 (228)
T KOG0512|consen 162 GLLT 165 (228)
T ss_pred ccch
Confidence 6665
No 31
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=6.8e-11 Score=100.78 Aligned_cols=80 Identities=24% Similarity=0.268 Sum_probs=48.5
Q ss_pred cccccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 529 TFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 529 ~~~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
..+++.....+.+++|+|+..+..+++++|+++|+.++.+|..|.||||-|+..|..+++++|+..||.+|..|..|+|+
T Consensus 96 ~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~Tp 175 (226)
T KOG4412|consen 96 GADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTP 175 (226)
T ss_pred CCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCcccccCccH
Confidence 44455555555566666666666666666666666666666666666666666666666666666666666666666653
No 32
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1.8e-10 Score=98.32 Aligned_cols=83 Identities=28% Similarity=0.321 Sum_probs=73.1
Q ss_pred hhhhcccccccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccC
Q 007326 523 QLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKG 602 (608)
Q Consensus 523 ~l~~~~~~~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~ 602 (608)
++..+....++..+....+|+|.|+..|.++++++|+..|+.+|..|..|+||||.|.+.++.+...+|+++|||++..|
T Consensus 123 qlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~ed 202 (226)
T KOG4412|consen 123 QLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDRED 202 (226)
T ss_pred HHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHHHhccCchHHHHHHHhccceeecc
Confidence 34444456677788888999999999999999999999999999999999999999988899999999999999999999
Q ss_pred CCC
Q 007326 603 NSI 605 (608)
Q Consensus 603 ~~g 605 (608)
+.|
T Consensus 203 ke~ 205 (226)
T KOG4412|consen 203 KEG 205 (226)
T ss_pred ccC
Confidence 988
No 33
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=99.09 E-value=1.5e-10 Score=109.58 Aligned_cols=115 Identities=22% Similarity=0.404 Sum_probs=105.4
Q ss_pred HHhHhhhcccccccCCCHHHHHHHHHHcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCee
Q 007326 383 TLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 383 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
.++.+.|+++|+++.|...+...++..+.++.|++|+.|..+|+.++.+|+|.+|.|.+.... +| ..+ .++.|++|
T Consensus 236 kMy~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~-~~--v~v-kl~~~dyf 311 (368)
T KOG1113|consen 236 KMYEPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKR-DG--VEV-KLKKGDYF 311 (368)
T ss_pred hhhhhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhcc-CC--eEE-Eechhhhc
Confidence 456789999999999999999999999999999999999999999999999999999988643 33 445 99999999
Q ss_pred cchhhhcCCCcccEEEEeeceeeEEechhhHHHHHHHhh
Q 007326 463 GEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYF 501 (608)
Q Consensus 463 Ge~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~l~~~~~ 501 (608)
||.+++.+.|+.+++.|.+...|..++++.|+.++....
T Consensus 312 ge~al~~~~pr~Atv~a~~~~kc~~~dk~~ferllgpc~ 350 (368)
T KOG1113|consen 312 GELALLKNLPRAATVVAKGRLKCAKLDKPRFERLLGPCQ 350 (368)
T ss_pred chHHHHhhchhhceeeccCCceeeeeChHHHHHHhhHHH
Confidence 999999999999999999999999999999999997643
No 34
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=99.01 E-value=5.8e-10 Score=83.97 Aligned_cols=70 Identities=29% Similarity=0.288 Sum_probs=66.1
Q ss_pred hhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCC
Q 007326 538 ELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQ 607 (608)
Q Consensus 538 ~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t 607 (608)
....|+|+|+..|..+.+++|+..|++++.+|..|.|||-.|...||.+||++|++.|||...+..+|.|
T Consensus 33 ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cVklLL~~GAdrt~~~PdG~~ 102 (117)
T KOG4214|consen 33 GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCVKLLLQNGADRTIHAPDGTA 102 (117)
T ss_pred CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHHHHHHHcCcccceeCCCchh
Confidence 5678999999999999999999999999999999999999999999999999999999999988877754
No 35
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=99.01 E-value=2.3e-10 Score=81.82 Aligned_cols=51 Identities=39% Similarity=0.540 Sum_probs=30.0
Q ss_pred HHHcC-CCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 558 LIRAG-ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 558 Ll~~g-ad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
|+++| ++++..|..|.||||+|+..|+.+++++|+++|+|++.+|..|+|+
T Consensus 1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tp 52 (56)
T PF13857_consen 1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTP 52 (56)
T ss_dssp -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--H
T ss_pred CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCH
Confidence 56777 9999999999999999999999999999999999999999999984
No 36
>PRK10537 voltage-gated potassium channel; Provisional
Probab=99.00 E-value=9.1e-09 Score=104.35 Aligned_cols=54 Identities=31% Similarity=0.461 Sum_probs=49.8
Q ss_pred HHHHHHHHHhhhhcccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007326 265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALI 318 (608)
Q Consensus 265 ~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~ 318 (608)
.+.+|+||+++|+||+||||+.|.+..+++++++++++|+.++++.++.+...+
T Consensus 168 s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~ 221 (393)
T PRK10537 168 SLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPV 221 (393)
T ss_pred CHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466999999999999999999999999999999999999999999998887643
No 37
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=98.94 E-value=3.6e-09 Score=84.37 Aligned_cols=64 Identities=34% Similarity=0.533 Sum_probs=58.3
Q ss_pred hhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccC
Q 007326 539 LALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKG 602 (608)
Q Consensus 539 ~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~ 602 (608)
..++++.|+..|..++++.|++.|++++..|..|+||||.|+..|+.+++++|+++|+++|.+|
T Consensus 26 ~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~n 89 (89)
T PF12796_consen 26 GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVKLLLEHGADVNIRN 89 (89)
T ss_dssp SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHHHHHHTTT-TTSS-
T ss_pred CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence 3458999999999999999999999999999999999999999999999999999999999876
No 38
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=98.91 E-value=2.1e-09 Score=109.64 Aligned_cols=71 Identities=32% Similarity=0.371 Sum_probs=35.2
Q ss_pred hhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCC-CCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCC
Q 007326 536 EAELALKVNSAAYHGDLYQLEGLIRAGADPNRTD-YDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIM 606 (608)
Q Consensus 536 ~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d-~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~ 606 (608)
+.++...+|.||..+..+++++|+++||++|+.+ ..+.||||+|+..|+..+|.+|+++|||++.+|.+|.
T Consensus 75 D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~ 146 (600)
T KOG0509|consen 75 DREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGL 146 (600)
T ss_pred CcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCC
Confidence 3344444455555555555555555555555444 4444555555555555555555555555555554444
No 39
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.85 E-value=7.1e-09 Score=98.26 Aligned_cols=73 Identities=29% Similarity=0.345 Sum_probs=68.2
Q ss_pred hhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHc-CCCCCccCCCCCC
Q 007326 535 HEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQK-GVDINLKGNSIMQ 607 (608)
Q Consensus 535 ~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~-gad~~~~~~~g~t 607 (608)
...++.+.+..|..+|....++.|+..|||+|.+|++|.|+|++|+++||+|++++||.. ++|....|.+|.|
T Consensus 336 AsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgST 409 (452)
T KOG0514|consen 336 ASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGST 409 (452)
T ss_pred hhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCch
Confidence 445677888889999999999999999999999999999999999999999999999987 8999999999988
No 40
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=98.80 E-value=7.3e-09 Score=73.58 Aligned_cols=53 Identities=42% Similarity=0.595 Sum_probs=44.6
Q ss_pred hhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHH
Q 007326 540 ALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLI 592 (608)
Q Consensus 540 ~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll 592 (608)
.++++.|+..|+.+.++.|++.|++++.+|..|+||||.|+..|+.+++++|+
T Consensus 2 ~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 2 RTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp SBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred ChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence 46789999999999999999999999999999999999999999999999986
No 41
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.77 E-value=5.9e-09 Score=101.99 Aligned_cols=70 Identities=26% Similarity=0.440 Sum_probs=49.8
Q ss_pred hhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCC
Q 007326 538 ELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQ 607 (608)
Q Consensus 538 ~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t 607 (608)
...+|+..||..|+.+++++|+++|+|++..|..|.|.||+|+.+|+.+++++|++.|||+|.++.+|.|
T Consensus 116 TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNT 185 (615)
T KOG0508|consen 116 TNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNT 185 (615)
T ss_pred cCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCch
Confidence 3346666677777777777777777777777777777777777777777777777777777777777665
No 42
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=98.77 E-value=3e-06 Score=83.57 Aligned_cols=91 Identities=12% Similarity=0.251 Sum_probs=72.5
Q ss_pred hHHHHHHHHHHHhhhhcccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHhC
Q 007326 262 FWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLMKYINRN 341 (608)
Q Consensus 262 ~~~~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~~m~~~ 341 (608)
.-.+|+.++|...+|..++||||+.|.|..++.+++++-++|.++.|.+++.++-.+ +..+--+.+++||-..
T Consensus 284 ~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvisRKL-------eLt~aEKhVhNFMmDt 356 (489)
T KOG3684|consen 284 VTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIARKL-------ELTKAEKHVHNFMMDT 356 (489)
T ss_pred hHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 346899999999999999999999999999999999999999999999888886543 2333345677777777
Q ss_pred CCCHHHHHHHHHHHHHHh
Q 007326 342 RLGRDIRDQIIGHLRLQY 359 (608)
Q Consensus 342 ~l~~~l~~~v~~y~~~~~ 359 (608)
++-+++++-.-+-++..|
T Consensus 357 qLTk~~KnAAA~VLqeTW 374 (489)
T KOG3684|consen 357 QLTKEHKNAAANVLQETW 374 (489)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777776666665555555
No 43
>PHA02884 ankyrin repeat protein; Provisional
Probab=98.76 E-value=2.4e-08 Score=97.23 Aligned_cols=73 Identities=26% Similarity=0.289 Sum_probs=68.0
Q ss_pred hhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCC-CCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 536 EAELALKVNSAAYHGDLYQLEGLIRAGADPNRT-DYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 536 ~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~-d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
+..+.+|+|.|+..+..+.++.|+++||++|.. +..|.||||.|+..++.+++++|+.+|||+|.+|..|+|+
T Consensus 67 d~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~Tp 140 (300)
T PHA02884 67 ENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTP 140 (300)
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCH
Confidence 346789999999999999999999999999986 4679999999999999999999999999999999999984
No 44
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=98.74 E-value=1.6e-08 Score=103.42 Aligned_cols=79 Identities=30% Similarity=0.449 Sum_probs=71.6
Q ss_pred ccccchh-hhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 530 FHISKHE-AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 530 ~~~~~~~-~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
.+++... .-..+|+|.|+..|+..++..|+++|||++.+|..|.+|+|.|+..++.-++-+|+.+|+|+|.+|.+|+|+
T Consensus 102 advn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTp 181 (600)
T KOG0509|consen 102 ADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTP 181 (600)
T ss_pred CCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCH
Confidence 3444433 335789999999999999999999999999999999999999999999999999999999999999999985
No 45
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=98.73 E-value=1.5e-08 Score=112.33 Aligned_cols=80 Identities=24% Similarity=0.302 Sum_probs=73.8
Q ss_pred cccccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 529 TFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 529 ~~~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
...+...+....++++.|+..|+...|++|+++|+|++.+|..|+||||.|+..|+.+|+++|+++||++|+.|.+|.|+
T Consensus 530 ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~Tp 609 (1143)
T KOG4177|consen 530 GANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTP 609 (1143)
T ss_pred CCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcch
Confidence 34455566777899999999999999999999999999999999999999999999999999999999999999999884
No 46
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=98.71 E-value=1.5e-08 Score=89.40 Aligned_cols=77 Identities=25% Similarity=0.289 Sum_probs=58.4
Q ss_pred ccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 532 ~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
++..+..+.+|+.+|+..|+++.+++|++.|||++...+...++|++|+..|+.++|++|+.++.|+|..|.+|-|+
T Consensus 153 VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTp 229 (296)
T KOG0502|consen 153 VNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTP 229 (296)
T ss_pred ccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCce
Confidence 45556667777777777777777777777777777777777777777777777777777777777777777777663
No 47
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=98.69 E-value=2.3e-08 Score=91.65 Aligned_cols=79 Identities=27% Similarity=0.339 Sum_probs=52.0
Q ss_pred ccccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 530 FHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 530 ~~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
.+++..+..-.+++|.|+.+|+.++++.|++..+|+|..+.+|.||||+||--|+..+++=|++.||.+++.++.|+|+
T Consensus 58 arvn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tp 136 (448)
T KOG0195|consen 58 ARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTP 136 (448)
T ss_pred cccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCc
Confidence 3444444444566666666777777777777677777777677777777776666666666666677777666666663
No 48
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=98.67 E-value=2.5e-08 Score=91.41 Aligned_cols=83 Identities=25% Similarity=0.314 Sum_probs=75.7
Q ss_pred hcccccccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCC
Q 007326 526 SDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSI 605 (608)
Q Consensus 526 ~~~~~~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g 605 (608)
.+..-+++..+.+...++|.+|..|+..+++.|+..|+.+|..+....||||+|+.+||.++|..|++..||+|+.+..|
T Consensus 21 d~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehg 100 (448)
T KOG0195|consen 21 DDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHG 100 (448)
T ss_pred cCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccC
Confidence 33444566677788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 007326 606 MQM 608 (608)
Q Consensus 606 ~t~ 608 (608)
.|+
T Consensus 101 ntp 103 (448)
T KOG0195|consen 101 NTP 103 (448)
T ss_pred CCc
Confidence 985
No 49
>PHA02741 hypothetical protein; Provisional
Probab=98.66 E-value=4.6e-08 Score=88.35 Aligned_cols=78 Identities=23% Similarity=0.341 Sum_probs=69.1
Q ss_pred cccchhhhhhhhhhhhhhcCC----HHHHHHHHHcCCCCCCCCC-CCChHhhHHHhcCcHHHHHHHHH-cCCCCCccCCC
Q 007326 531 HISKHEAELALKVNSAAYHGD----LYQLEGLIRAGADPNRTDY-DGRSPLHLAASRGYEEIMTFLIQ-KGVDINLKGNS 604 (608)
Q Consensus 531 ~~~~~~~~~~~~l~~aa~~g~----~~~~~~Ll~~gad~~~~d~-~g~t~L~~a~~~~~~~~v~~Ll~-~gad~~~~~~~ 604 (608)
.++..+....+++|.|+..+. .+.++.|++.|++++.++. .|+||||.|+..++.+++++|+. .|++++.+|..
T Consensus 52 ~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~ 131 (169)
T PHA02741 52 ALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNAD 131 (169)
T ss_pred hhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCC
Confidence 345556677899999999988 5788999999999999985 89999999999999999999997 59999999999
Q ss_pred CCCC
Q 007326 605 IMQM 608 (608)
Q Consensus 605 g~t~ 608 (608)
|+|+
T Consensus 132 g~tp 135 (169)
T PHA02741 132 NKSP 135 (169)
T ss_pred CCCH
Confidence 9985
No 50
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=98.66 E-value=2.4e-08 Score=98.90 Aligned_cols=72 Identities=28% Similarity=0.287 Sum_probs=65.1
Q ss_pred ccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCC
Q 007326 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603 (608)
Q Consensus 532 ~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~ 603 (608)
....+.++.+++|.|...|+.+++++|++.|+++|..|.+||||||+|++.++..+++.|+++||-+-+.+.
T Consensus 576 pSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ckqLVe~GaavfAsTl 647 (752)
T KOG0515|consen 576 PSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCKQLVESGAAVFASTL 647 (752)
T ss_pred CCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHHHHHhccceEEeeec
Confidence 344556778899999999999999999999999999999999999999999999999999999998877654
No 51
>PHA02791 ankyrin-like protein; Provisional
Probab=98.66 E-value=4.3e-08 Score=95.42 Aligned_cols=67 Identities=15% Similarity=0.070 Sum_probs=63.6
Q ss_pred hhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChH-hhHHHhcCcHHHHHHHHHcCCCCCccCCCC
Q 007326 539 LALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSP-LHLAASRGYEEIMTFLIQKGVDINLKGNSI 605 (608)
Q Consensus 539 ~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~-L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g 605 (608)
..+|+|.|+..|+.++++.|+++|++++..|..|.|| ||+|+..|+.+++++|+++|||+|++|.+|
T Consensus 160 g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~~~ 227 (284)
T PHA02791 160 LLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNLEN 227 (284)
T ss_pred CccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCcccC
Confidence 4689999999999999999999999999999999877 999999999999999999999999999865
No 52
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=98.66 E-value=2.1e-08 Score=105.37 Aligned_cols=115 Identities=23% Similarity=0.295 Sum_probs=104.2
Q ss_pred HHHHHHHHHcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecchhhhcCCCcccEEEEe
Q 007326 401 EFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVC 480 (608)
Q Consensus 401 ~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~ 480 (608)
.++..+-.++....+.||+.+++|||..|++|+|..|+++.+.....|+..++..++.||.+|+...+++.+|..|+.|+
T Consensus 499 p~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~~~~k~~i~~EygrGd~iG~~E~lt~~~R~tTv~Av 578 (1158)
T KOG2968|consen 499 PFLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQSGGKKEIVGEYGRGDLIGEVEMLTKQPRATTVMAV 578 (1158)
T ss_pred HHHhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhccCccchhhhhccCcceeehhHHhhcCCccceEEEE
Confidence 45566666788899999999999999999999999999998876667777799999999999999999999999999999
Q ss_pred eceeeEEechhhHHHHHHHhhhcHHHHHHHHhccc
Q 007326 481 ELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGK 515 (608)
Q Consensus 481 ~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~l~~~~ 515 (608)
.++++.+||...|..+..+||+...++.+-+.++.
T Consensus 579 RdSelariPe~l~~~ik~ryP~v~~rl~~ll~~~~ 613 (1158)
T KOG2968|consen 579 RDSELARIPEGLLNFIKLRYPQVVTRLIKLLAEKI 613 (1158)
T ss_pred eehhhhhccHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 99999999999999999999999998888777643
No 53
>PHA02791 ankyrin-like protein; Provisional
Probab=98.64 E-value=6e-08 Score=94.41 Aligned_cols=68 Identities=19% Similarity=0.266 Sum_probs=61.0
Q ss_pred hhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCC
Q 007326 540 ALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQ 607 (608)
Q Consensus 540 ~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t 607 (608)
.+|++.|+..+..++++.|+..|++++..|..|+||||+|+..|+.+++++|+++|+++|.++..|++
T Consensus 62 ~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~ 129 (284)
T PHA02791 62 EFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWK 129 (284)
T ss_pred CCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCc
Confidence 57889999999999999999999999999999999999999999999999999999999988888863
No 54
>PHA02859 ankyrin repeat protein; Provisional
Probab=98.64 E-value=7.5e-08 Score=90.09 Aligned_cols=79 Identities=19% Similarity=0.194 Sum_probs=68.4
Q ss_pred ccccchhhhhhhhhhhhhh--cCCHHHHHHHHHcCCCCCCCCCCCChHhhH-HHhcCcHHHHHHHHHcCCCCCccCCCCC
Q 007326 530 FHISKHEAELALKVNSAAY--HGDLYQLEGLIRAGADPNRTDYDGRSPLHL-AASRGYEEIMTFLIQKGVDINLKGNSIM 606 (608)
Q Consensus 530 ~~~~~~~~~~~~~l~~aa~--~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~-a~~~~~~~~v~~Ll~~gad~~~~~~~g~ 606 (608)
..++..+..+.+++|.++. .+..++++.|++.|++++.+|..|.||||. |+..++.+++++|+++|+|++.+|..|+
T Consensus 114 adin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g~ 193 (209)
T PHA02859 114 SSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINETNKSGY 193 (209)
T ss_pred CCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCC
Confidence 3455566677888887754 468999999999999999999999999995 5678899999999999999999999999
Q ss_pred CC
Q 007326 607 QM 608 (608)
Q Consensus 607 t~ 608 (608)
|+
T Consensus 194 tp 195 (209)
T PHA02859 194 NC 195 (209)
T ss_pred CH
Confidence 84
No 55
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=98.63 E-value=9.6e-08 Score=76.06 Aligned_cols=62 Identities=37% Similarity=0.502 Sum_probs=57.1
Q ss_pred hhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 543 VNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 543 l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
++.|+..++.+.++.|++.+.+.+. |.||||+|+..|+.+++++|+++|++++.+|..|+|.
T Consensus 1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~ 62 (89)
T PF12796_consen 1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTA 62 (89)
T ss_dssp HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBH
T ss_pred CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCH
Confidence 4679999999999999999988877 8899999999999999999999999999999999883
No 56
>PHA02795 ankyrin-like protein; Provisional
Probab=98.62 E-value=5.8e-08 Score=98.48 Aligned_cols=69 Identities=20% Similarity=0.149 Sum_probs=64.9
Q ss_pred hhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 540 ALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 540 ~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
.++++.++..+..++++.|+++|+++|.+|..|.||||+|+..|+.+++++|+++|||+|.+|..|+|+
T Consensus 189 ~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~Tp 257 (437)
T PHA02795 189 YTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTC 257 (437)
T ss_pred cchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCH
Confidence 356777888899999999999999999999999999999999999999999999999999999999984
No 57
>PHA02743 Viral ankyrin protein; Provisional
Probab=98.62 E-value=6.8e-08 Score=86.82 Aligned_cols=78 Identities=18% Similarity=0.129 Sum_probs=64.8
Q ss_pred ccccchh-hhhhhhhhhhhhcCCHHHHHHHHH-cCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCC
Q 007326 530 FHISKHE-AELALKVNSAAYHGDLYQLEGLIR-AGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQ 607 (608)
Q Consensus 530 ~~~~~~~-~~~~~~l~~aa~~g~~~~~~~Ll~-~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t 607 (608)
..++..+ ....+++|.|+..+..++++.|+. .|++++..+..|.||||+|+..++.+++++|+++||+++.++..|..
T Consensus 84 adin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~ 163 (166)
T PHA02743 84 ADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSIGLS 163 (166)
T ss_pred CCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCcc
Confidence 3445454 467788899999999999998885 78999998989999999999999999999999999999988887753
No 58
>PHA02946 ankyin-like protein; Provisional
Probab=98.60 E-value=1.3e-07 Score=99.05 Aligned_cols=79 Identities=20% Similarity=0.241 Sum_probs=68.0
Q ss_pred cccccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCc--HHHHHHHHHcCCCCCc-cCCCC
Q 007326 529 TFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGY--EEIMTFLIQKGVDINL-KGNSI 605 (608)
Q Consensus 529 ~~~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~--~~~v~~Ll~~gad~~~-~~~~g 605 (608)
...++..+....+|+|.|+..++.++++.|+++|++++.+|..|.||||+|+..++ .+++++|+++||++|. .|..|
T Consensus 62 Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g 141 (446)
T PHA02946 62 GYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEG 141 (446)
T ss_pred cCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCC
Confidence 34566677788899999999999999999999999999999999999999887654 6889999999999995 57777
Q ss_pred CC
Q 007326 606 MQ 607 (608)
Q Consensus 606 ~t 607 (608)
.|
T Consensus 142 ~t 143 (446)
T PHA02946 142 CG 143 (446)
T ss_pred Cc
Confidence 76
No 59
>PF13606 Ank_3: Ankyrin repeat
Probab=98.59 E-value=5.7e-08 Score=58.88 Aligned_cols=30 Identities=50% Similarity=0.917 Sum_probs=28.5
Q ss_pred CCChHhhHHHhcCcHHHHHHHHHcCCCCCc
Q 007326 571 DGRSPLHLAASRGYEEIMTFLIQKGVDINL 600 (608)
Q Consensus 571 ~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~ 600 (608)
+|+||||+|+..|+.+++++|+++|+|+|+
T Consensus 1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~ 30 (30)
T PF13606_consen 1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA 30 (30)
T ss_pred CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence 589999999999999999999999999984
No 60
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=98.58 E-value=7.4e-08 Score=60.31 Aligned_cols=33 Identities=48% Similarity=0.890 Sum_probs=31.3
Q ss_pred CCChHhhHHHhcCcHHHHHHHHHcCCCCCccCC
Q 007326 571 DGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603 (608)
Q Consensus 571 ~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~ 603 (608)
+|.||||+|+..|+.+++++|+++|||++.+|+
T Consensus 1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~ 33 (33)
T PF00023_consen 1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN 33 (33)
T ss_dssp TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence 589999999999999999999999999999874
No 61
>PHA02878 ankyrin repeat protein; Provisional
Probab=98.58 E-value=1.1e-07 Score=101.53 Aligned_cols=78 Identities=22% Similarity=0.312 Sum_probs=56.5
Q ss_pred ccccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhc-CcHHHHHHHHHcCCCCCccCC-CCCC
Q 007326 530 FHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASR-GYEEIMTFLIQKGVDINLKGN-SIMQ 607 (608)
Q Consensus 530 ~~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~-~~~~~v~~Ll~~gad~~~~~~-~g~t 607 (608)
..++..+..+.+|+|.|+..+..++++.|++.|++++.+|..|.||||+|+.. ++.+++++|+++|+|+|.++. .|.|
T Consensus 192 ad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~T 271 (477)
T PHA02878 192 ANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLT 271 (477)
T ss_pred CCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCC
Confidence 34444555666777777777777777777777777777777777777777754 567777777777777777765 5666
No 62
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.56 E-value=5.4e-08 Score=95.44 Aligned_cols=78 Identities=24% Similarity=0.332 Sum_probs=70.1
Q ss_pred ccccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 530 FHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 530 ~~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
++.+..+..+++.++.||..|+.+++++|++.|+|+|.++..|+|+||.+++.|+.+++++|+++|+-.+. |..|+|+
T Consensus 141 ad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~-d~~GmtP 218 (615)
T KOG0508|consen 141 ADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDV-DGHGMTP 218 (615)
T ss_pred CCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceeee-cCCCCch
Confidence 34444556778899999999999999999999999999999999999999999999999999999998884 7779885
No 63
>PHA02743 Viral ankyrin protein; Provisional
Probab=98.54 E-value=2.5e-07 Score=83.18 Aligned_cols=77 Identities=22% Similarity=0.256 Sum_probs=67.4
Q ss_pred ccchhhhhhhhhhhhhhcCCHH---HHHHHHHcCCCCCCCC-CCCChHhhHHHhcCcHHHHHHHHH-cCCCCCccCCCCC
Q 007326 532 ISKHEAELALKVNSAAYHGDLY---QLEGLIRAGADPNRTD-YDGRSPLHLAASRGYEEIMTFLIQ-KGVDINLKGNSIM 606 (608)
Q Consensus 532 ~~~~~~~~~~~l~~aa~~g~~~---~~~~Ll~~gad~~~~d-~~g~t~L~~a~~~~~~~~v~~Ll~-~gad~~~~~~~g~ 606 (608)
++..+....+++|+|+..+..+ .++.|+..|+++|.+| ..|.||||+|+..++.+++++|+. .|++++.+|..|+
T Consensus 50 ~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~ 129 (166)
T PHA02743 50 LHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHE 129 (166)
T ss_pred hhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCC
Confidence 3444566789999999988755 4789999999999998 489999999999999999999995 7999999999998
Q ss_pred CC
Q 007326 607 QM 608 (608)
Q Consensus 607 t~ 608 (608)
|+
T Consensus 130 tp 131 (166)
T PHA02743 130 TA 131 (166)
T ss_pred CH
Confidence 84
No 64
>PHA02859 ankyrin repeat protein; Provisional
Probab=98.54 E-value=2.7e-07 Score=86.37 Aligned_cols=79 Identities=18% Similarity=0.168 Sum_probs=63.3
Q ss_pred ccccchh-hhhhhhhhhhhh---cCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHh--cCcHHHHHHHHHcCCCCCccCC
Q 007326 530 FHISKHE-AELALKVNSAAY---HGDLYQLEGLIRAGADPNRTDYDGRSPLHLAAS--RGYEEIMTFLIQKGVDINLKGN 603 (608)
Q Consensus 530 ~~~~~~~-~~~~~~l~~aa~---~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~--~~~~~~v~~Ll~~gad~~~~~~ 603 (608)
..++..+ ....+++|.++. .+..++++.|+++|++++.+|..|.||||.|+. .++.+++++|+++|+|+|.+|.
T Consensus 77 advn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~ 156 (209)
T PHA02859 77 ADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDF 156 (209)
T ss_pred CCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccC
Confidence 3444433 356678887654 347889999999999999999999999998865 4678999999999999999999
Q ss_pred CCCCC
Q 007326 604 SIMQM 608 (608)
Q Consensus 604 ~g~t~ 608 (608)
.|.|+
T Consensus 157 ~g~t~ 161 (209)
T PHA02859 157 DNNNI 161 (209)
T ss_pred CCCcH
Confidence 99874
No 65
>PHA02884 ankyrin repeat protein; Provisional
Probab=98.54 E-value=1.5e-07 Score=91.68 Aligned_cols=69 Identities=20% Similarity=0.256 Sum_probs=61.4
Q ss_pred hhhhhhhhhcCCHHHHHHHHHcCCCCCCCC----CCCChHhhHHHhcCcHHHHHHHHHcCCCCCccC-CCCCCC
Q 007326 540 ALKVNSAAYHGDLYQLEGLIRAGADPNRTD----YDGRSPLHLAASRGYEEIMTFLIQKGVDINLKG-NSIMQM 608 (608)
Q Consensus 540 ~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d----~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~-~~g~t~ 608 (608)
.++++.|+..+..+.++.|+++|++++.++ ..|.||||+|+..++.+++++|+++|||+|.++ ..|.|+
T Consensus 34 ~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~Tp 107 (300)
T PHA02884 34 ANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITP 107 (300)
T ss_pred CHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCH
Confidence 455677888899999999999999999974 589999999999999999999999999999975 578774
No 66
>PHA02736 Viral ankyrin protein; Provisional
Probab=98.53 E-value=9.8e-08 Score=84.86 Aligned_cols=70 Identities=24% Similarity=0.289 Sum_probs=41.0
Q ss_pred hhhhhhhhhhhcCCH---HHHHHHHHcCCCCCCCCC-CCChHhhHHHhcCcHHHHHHHHH-cCCCCCccCCCCCC
Q 007326 538 ELALKVNSAAYHGDL---YQLEGLIRAGADPNRTDY-DGRSPLHLAASRGYEEIMTFLIQ-KGVDINLKGNSIMQ 607 (608)
Q Consensus 538 ~~~~~l~~aa~~g~~---~~~~~Ll~~gad~~~~d~-~g~t~L~~a~~~~~~~~v~~Ll~-~gad~~~~~~~g~t 607 (608)
...+++|.|+..+.. +.++.|++.|++++.++. .|.||||+|+..++.+++++|+. .|+|+|.+|..|+|
T Consensus 54 ~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~t 128 (154)
T PHA02736 54 HGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKT 128 (154)
T ss_pred CCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCC
Confidence 344555666655554 235556666666666653 56666666666666666666665 36666666666655
No 67
>PHA03095 ankyrin-like protein; Provisional
Probab=98.51 E-value=3.2e-07 Score=98.00 Aligned_cols=77 Identities=29% Similarity=0.342 Sum_probs=44.1
Q ss_pred cccchhhhhhhhhhhhhhcC-CHHHHHHHHHcCCCCCCCCCCCChHhhHHH--hcCcHHHHHHHHHcCCCCCccCCCCCC
Q 007326 531 HISKHEAELALKVNSAAYHG-DLYQLEGLIRAGADPNRTDYDGRSPLHLAA--SRGYEEIMTFLIQKGVDINLKGNSIMQ 607 (608)
Q Consensus 531 ~~~~~~~~~~~~l~~aa~~g-~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~--~~~~~~~v~~Ll~~gad~~~~~~~g~t 607 (608)
+++..+..+.+|+|.|+..+ ..++++.|+++|++++..|..|.||||.|+ ..++.+++++|+++|+|++.+|..|.|
T Consensus 75 din~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~t 154 (471)
T PHA03095 75 DVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMT 154 (471)
T ss_pred CCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCC
Confidence 33334445555666666655 355666666666666666666666666665 334555666666666666666655555
No 68
>PHA02875 ankyrin repeat protein; Provisional
Probab=98.51 E-value=2.5e-07 Score=96.93 Aligned_cols=73 Identities=25% Similarity=0.297 Sum_probs=52.2
Q ss_pred hhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCC
Q 007326 535 HEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQ 607 (608)
Q Consensus 535 ~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t 607 (608)
.+....+|+|.|+..++.+.++.|+++|++++..|..|.||||.|+..|+.+++++|+++|||+|..+..|.+
T Consensus 131 ~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~ 203 (413)
T PHA02875 131 PNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCV 203 (413)
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCc
Confidence 3344566777777777777777777777777777777777777777777777777777777777777766643
No 69
>PHA03095 ankyrin-like protein; Provisional
Probab=98.51 E-value=2.5e-07 Score=98.78 Aligned_cols=78 Identities=23% Similarity=0.152 Sum_probs=65.4
Q ss_pred cccchhhhhhhhhhhhhhcCCH--HHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 531 HISKHEAELALKVNSAAYHGDL--YQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 531 ~~~~~~~~~~~~l~~aa~~g~~--~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
..+..+..+.+|+|.|+..+.. ..++.++..|+++|.+|..|+||||+|+..|+.+++++|+++|||+|.+|.+|.|+
T Consensus 214 ~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tp 293 (471)
T PHA03095 214 DPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTP 293 (471)
T ss_pred CCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCH
Confidence 4445566778888888887764 47778888999999999999999999999999999999999999999999998874
No 70
>PHA02798 ankyrin-like protein; Provisional
Probab=98.49 E-value=2.6e-07 Score=98.75 Aligned_cols=72 Identities=31% Similarity=0.380 Sum_probs=38.8
Q ss_pred cccchhhhhhhhhhhhhhcC---CHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCc---HHHHHHHHHcCCCCCccC
Q 007326 531 HISKHEAELALKVNSAAYHG---DLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGY---EEIMTFLIQKGVDINLKG 602 (608)
Q Consensus 531 ~~~~~~~~~~~~l~~aa~~g---~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~---~~~v~~Ll~~gad~~~~~ 602 (608)
+++..+..+.+|+|.|+..+ ..+.++.|+++|++++..|..|.||||+|+..++ .+++++|+++|+|+|..+
T Consensus 101 diN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~ 178 (489)
T PHA02798 101 DINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHN 178 (489)
T ss_pred CCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCccccc
Confidence 34444444555555555443 4455555555555555555555555555555554 555555555555555553
No 71
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=98.48 E-value=3.4e-07 Score=91.14 Aligned_cols=171 Identities=18% Similarity=0.302 Sum_probs=97.1
Q ss_pred eehHHHHHHHHHHHHHHhhceeeEEeCCCcEEeeccHHHHHHHhhccchhHHHhhccHHHHHhhcCchhHHHHHHHHHHH
Q 007326 105 LYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLY 184 (608)
Q Consensus 105 ~~~~~~~~~~if~~d~~l~f~t~~~~~~~~~~i~~~~~i~~~y~~~~f~iDll~~lP~~~~~~~~~~~~~~~~l~llrl~ 184 (608)
+|++..++..+-+.--++-|+.+|...- .+-.+.-.|++++++.+||.+-..... +.+|.+.-.+
T Consensus 92 iw~lq~~~a~is~~~ti~~~yl~ysgsv-----------vrllinihfllelitsfpfii~ifips----ltylyvpvfl 156 (1087)
T KOG3193|consen 92 IWFLQTMFACISMVYTILVFYLSYSGSV-----------VRLLINIHFLLELITSFPFIISIFIPS----LTYLYVPVFL 156 (1087)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccch-----------hhhhhhHHHHHHHhhcccceeeeeccc----cceeechhhh
Confidence 4567777777777777888888876322 122233367899999999976443332 4455555555
Q ss_pred HHHHHHHHHHHHHHHhhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccCCCCccccc
Q 007326 185 RVRKVSQFFHKMEKDIRI------NYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFR 258 (608)
Q Consensus 185 rl~r~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~h~~ac~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 258 (608)
.++-....+..+.+++.. +..+.++..+ ....+|+.|.-.+.... +.+ ..-+
T Consensus 157 ncwlakgalqammndl~r~~~~s~sal~~ql~ll-------~s~l~clift~~c~i~h-------~qr--------a~~k 214 (1087)
T KOG3193|consen 157 NCWLAKGALQAMMNDLNRKSFISSSALFRQLLLL-------FSVLACLIFTGMCSIEH-------LQR--------ARGK 214 (1087)
T ss_pred hhhhhhhHHHHhhhhHhHHhhhhHHHHHHHHHHH-------HHHHHHHHHhhhhhHHH-------HHH--------ccCc
Confidence 555443333333332211 1112222222 23344554432211000 000 0000
Q ss_pred ccchHHHHHHHHHHHhhhhcccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007326 259 EIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTA 316 (608)
Q Consensus 259 ~~~~~~~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~ 316 (608)
. .....|+||+++|++||||||..|.-|..++..++++.+..++..--+-.++.
T Consensus 215 ~----i~lf~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~~ip~q~~~l~~ 268 (1087)
T KOG3193|consen 215 R----IDLFTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALGLIPKQLDELGQ 268 (1087)
T ss_pred e----eeeeeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHhccHHHHHHHHH
Confidence 1 12347899999999999999999999999988887776666666555555544
No 72
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=98.48 E-value=2.6e-07 Score=100.51 Aligned_cols=73 Identities=21% Similarity=0.143 Sum_probs=64.1
Q ss_pred hhhhhhhhhhhhh--cCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCc--HHHHHHHHHcCCCCCccCCCCCCC
Q 007326 536 EAELALKVNSAAY--HGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGY--EEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 536 ~~~~~~~l~~aa~--~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~--~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
+..+.+++|.++. .++.+.++.|+++|++++..|..|.||||.|+..|+ .+++++|+++|||+|.+|..|+|+
T Consensus 174 d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TP 250 (764)
T PHA02716 174 KKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSP 250 (764)
T ss_pred CCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence 4456778887643 467899999999999999999999999999999985 489999999999999999999984
No 73
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.47 E-value=1.4e-07 Score=89.70 Aligned_cols=76 Identities=20% Similarity=0.348 Sum_probs=64.5
Q ss_pred ccchhhhhhhhhhhhhhcCCHHHHHHHHHcC-CCCCCCCCC--------------------------------------C
Q 007326 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAG-ADPNRTDYD--------------------------------------G 572 (608)
Q Consensus 532 ~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~g-ad~~~~d~~--------------------------------------g 572 (608)
++-.+..+++.+|++..+++.++++.|++.| ++++..+.. |
T Consensus 261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKAsQ~g 340 (452)
T KOG0514|consen 261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNAKASQHG 340 (452)
T ss_pred hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcchhhhhhc
Confidence 4555667788899999999999999999888 566665554 4
Q ss_pred ChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCC
Q 007326 573 RSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQ 607 (608)
Q Consensus 573 ~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t 607 (608)
.|+|++|+++|+.+.|+.||..|||||+.|.+|.|
T Consensus 341 QTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGST 375 (452)
T KOG0514|consen 341 QTALMLAVSHGRVDMVKALLACGADVNIQDDDGST 375 (452)
T ss_pred chhhhhhhhcCcHHHHHHHHHccCCCccccCCccH
Confidence 55599999999999999999999999999999988
No 74
>PHA02875 ankyrin repeat protein; Provisional
Probab=98.46 E-value=2.7e-07 Score=96.65 Aligned_cols=71 Identities=25% Similarity=0.257 Sum_probs=68.0
Q ss_pred hhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 538 ELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 538 ~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
.+.+|+|.|+..++.+.++.|++.|++++..+..|.||||.|+..|+.+++++|+++|++++.+|..|.|+
T Consensus 101 ~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~Tp 171 (413)
T PHA02875 101 DGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTP 171 (413)
T ss_pred CCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999984
No 75
>PHA02874 ankyrin repeat protein; Provisional
Probab=98.46 E-value=3.6e-07 Score=96.22 Aligned_cols=79 Identities=25% Similarity=0.267 Sum_probs=63.5
Q ss_pred ccccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 530 FHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 530 ~~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
..++..+..+.+|+|.|+..+..+.++.|++.|++++..+..|.||||.|+..|+.+++++|+++|++++.++..|.|+
T Consensus 148 ad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~Tp 226 (434)
T PHA02874 148 ADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTP 226 (434)
T ss_pred CCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCH
Confidence 3444455666778888888888888888888888888888888888888888888888888888888888888888773
No 76
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels.
Probab=98.45 E-value=1.3e-07 Score=70.52 Aligned_cols=42 Identities=26% Similarity=0.517 Sum_probs=38.0
Q ss_pred cccceEEcCCChhHHHHHHHHHHHHHHHHHHhhhhheeccCC
Q 007326 60 FSRNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGL 101 (608)
Q Consensus 60 ~~~~~~i~p~s~~~~~w~~~~~~~~~~~~~~~p~~~~f~~~~ 101 (608)
....++|||.|.++.+||++++++++++++++|+.++|..+.
T Consensus 33 ~~~~~IIHP~S~fR~~WD~~m~~~~~~~~~~iP~~isF~~d~ 74 (77)
T PF08412_consen 33 SSGPWIIHPFSKFRFYWDLIMLILLLYNLIIIPFRISFFSDE 74 (77)
T ss_pred cCCCeEEcCCccHHHHHHHHHHHHHHHHHHHHhhhheEecCc
Confidence 346789999999999999999999999999999999997653
No 77
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=98.44 E-value=2.8e-07 Score=91.50 Aligned_cols=66 Identities=29% Similarity=0.412 Sum_probs=62.6
Q ss_pred hhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 543 VNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 543 l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
+.-|+..|.++.++..+..-.|+...++.|.|+||-|.+.||.+||++|+..|||||+.|.+|||+
T Consensus 554 LLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTP 619 (752)
T KOG0515|consen 554 LLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTP 619 (752)
T ss_pred HHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCch
Confidence 345788999999999999999999999999999999999999999999999999999999999995
No 78
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.44 E-value=1.8e-05 Score=84.31 Aligned_cols=92 Identities=18% Similarity=0.301 Sum_probs=56.1
Q ss_pred cccccceEEcCCChhHHHH---------HHHHHHHHHHHHHHhhhhhe-eccCC-CcCeehHH-HHHHHHHHHHHHhhce
Q 007326 58 RHFSRNLVFHPDNRWYRAW---------TKFILIWAVYSSIFTPVEFG-FFRGL-SKNLYVLD-IVGQIAFLFDIVLQFC 125 (608)
Q Consensus 58 ~~~~~~~~i~p~s~~~~~w---------~~~~~~~~~~~~~~~p~~~~-f~~~~-~~~~~~~~-~~~~~if~~d~~l~f~ 125 (608)
+-.+..+++.|+++|+..- +.+++++++.+.+.+.+.-. -.... +..+..++ +++..||++|+.++..
T Consensus 1099 r~~Ws~ylF~pQ~rFR~lc~~ii~hk~Fd~vVl~~IfLNcVtialerp~i~~~s~EriFltlsnyIFtaIfV~Em~lKVV 1178 (1956)
T KOG2302|consen 1099 RELWSKYLFSPQNRFRVLCQNIIQHKAFDTVVLFFIFLNCVTIALERPAIVEGSTERIFLTLSNYIFTAIFVVEMTLKVV 1178 (1956)
T ss_pred HHHHHHHhcCcccHHHHHHHHHHHHhhhhheehhhhhhhhHHHHhcccccccCcceEEEEEecchHHHHHHHHHHHHHHH
Confidence 4556778999999998654 44455555566655554221 11111 22234444 8899999999988853
Q ss_pred e-eEEeCCCcEEeeccHHHHHHHhhc-cchhHHHhhcc
Q 007326 126 L-AYRDSQTYRLICKRTPIALRYLRS-SFIIDLFSCMP 161 (608)
Q Consensus 126 t-~~~~~~~~~~i~~~~~i~~~y~~~-~f~iDll~~lP 161 (608)
. |.+-.+ ..|+++ |-.+|.+-++-
T Consensus 1179 ALGl~fge------------~aYl~ssWN~LDgflv~v 1204 (1956)
T KOG2302|consen 1179 ALGLYFGE------------QAYLRSSWNVLDGFLVAV 1204 (1956)
T ss_pred hhhhccch------------HHHHHHHHHhhhHHHHHH
Confidence 2 333222 789988 66888755443
No 79
>PHA02946 ankyin-like protein; Provisional
Probab=98.44 E-value=8.6e-07 Score=92.92 Aligned_cols=61 Identities=31% Similarity=0.398 Sum_probs=57.7
Q ss_pred hcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 548 YHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 548 ~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
.....+.++.|+++|+++|.+|..|.||||+|+..|+.+++++|+++|||+|.+|..|.|+
T Consensus 48 ~~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~Tp 108 (446)
T PHA02946 48 KGLDERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTP 108 (446)
T ss_pred cCCCHHHHHHHHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCH
Confidence 4557789999999999999999999999999999999999999999999999999999985
No 80
>PHA02741 hypothetical protein; Provisional
Probab=98.43 E-value=3.2e-07 Score=82.86 Aligned_cols=74 Identities=27% Similarity=0.242 Sum_probs=65.0
Q ss_pred hhhhhhhhhhhhhhcCCHHHHHHHHH------cCCCCCCCCCCCChHhhHHHhcCc----HHHHHHHHHcCCCCCccCC-
Q 007326 535 HEAELALKVNSAAYHGDLYQLEGLIR------AGADPNRTDYDGRSPLHLAASRGY----EEIMTFLIQKGVDINLKGN- 603 (608)
Q Consensus 535 ~~~~~~~~l~~aa~~g~~~~~~~Ll~------~gad~~~~d~~g~t~L~~a~~~~~----~~~v~~Ll~~gad~~~~~~- 603 (608)
.+....+++|.|+..|+.+.++.|+. .|++++.+|..|.||||.|+..|+ .+++++|+++|+++|.++.
T Consensus 17 ~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~ 96 (169)
T PHA02741 17 KNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEML 96 (169)
T ss_pred cccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcC
Confidence 44567789999999999999998853 368999999999999999999998 5889999999999999985
Q ss_pred CCCCC
Q 007326 604 SIMQM 608 (608)
Q Consensus 604 ~g~t~ 608 (608)
.|+|+
T Consensus 97 ~g~Tp 101 (169)
T PHA02741 97 EGDTA 101 (169)
T ss_pred CCCCH
Confidence 89884
No 81
>PHA03100 ankyrin repeat protein; Provisional
Probab=98.43 E-value=4.6e-07 Score=97.00 Aligned_cols=69 Identities=25% Similarity=0.262 Sum_probs=60.0
Q ss_pred hhhhhhhhhcCC--HHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 540 ALKVNSAAYHGD--LYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 540 ~~~l~~aa~~g~--~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
.++++.|+..+. .+.++.|++.|++++.+|..|.||||.|+..|+.+++++|+++|||+|.+|..|.|+
T Consensus 216 ~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tp 286 (480)
T PHA03100 216 ETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTP 286 (480)
T ss_pred HhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcH
Confidence 677888888888 888888888888888888888889998888888888888888888888888888874
No 82
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=98.42 E-value=5.1e-07 Score=76.83 Aligned_cols=67 Identities=27% Similarity=0.248 Sum_probs=60.2
Q ss_pred hhhhhhhcCCHHHHHHHHHcC-CCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 542 KVNSAAYHGDLYQLEGLIRAG-ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 542 ~l~~aa~~g~~~~~~~Ll~~g-ad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
-+..|+..+....++.|++.. ..+|.+|.+|.||||-|+..|+.++++.|+..||++++++..|||+
T Consensus 66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTP 133 (228)
T KOG0512|consen 66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTP 133 (228)
T ss_pred HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccc
Confidence 345688889999888888766 5579999999999999999999999999999999999999999996
No 83
>PHA02795 ankyrin-like protein; Provisional
Probab=98.41 E-value=4.3e-07 Score=92.23 Aligned_cols=75 Identities=23% Similarity=0.269 Sum_probs=67.4
Q ss_pred ccccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcC--------cHHHHHHHHHcCCCCCcc
Q 007326 530 FHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRG--------YEEIMTFLIQKGVDINLK 601 (608)
Q Consensus 530 ~~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~--------~~~~v~~Ll~~gad~~~~ 601 (608)
+.++..+..+.+|++.|+..|+.+.++.|+++|++++.+|..|.||||.|+..| +.+++++|+++|++++..
T Consensus 212 ADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~~ 291 (437)
T PHA02795 212 EDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDCI 291 (437)
T ss_pred CCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCch
Confidence 445666778889999999999999999999999999999999999999999998 469999999999999976
Q ss_pred CCC
Q 007326 602 GNS 604 (608)
Q Consensus 602 ~~~ 604 (608)
+..
T Consensus 292 ~~~ 294 (437)
T PHA02795 292 KLA 294 (437)
T ss_pred hHH
Confidence 644
No 84
>PHA02878 ankyrin repeat protein; Provisional
Probab=98.40 E-value=5.5e-07 Score=96.05 Aligned_cols=80 Identities=20% Similarity=0.186 Sum_probs=69.9
Q ss_pred cccccccchhhhhhhhhhhhhhc-CCHHHHHHHHHcCCCCCCCCC-CCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCC
Q 007326 527 DITFHISKHEAELALKVNSAAYH-GDLYQLEGLIRAGADPNRTDY-DGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNS 604 (608)
Q Consensus 527 ~~~~~~~~~~~~~~~~l~~aa~~-g~~~~~~~Ll~~gad~~~~d~-~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~ 604 (608)
+....++..+..+.+|+|.|+.. +..++++.|+++|++++..+. .|.||||.| .++.+++++|+++|||+|+.|..
T Consensus 222 ~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~ 299 (477)
T PHA02878 222 ENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNSY 299 (477)
T ss_pred HcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCC
Confidence 34455666777888999999865 689999999999999999986 799999999 56789999999999999999999
Q ss_pred CCCC
Q 007326 605 IMQM 608 (608)
Q Consensus 605 g~t~ 608 (608)
|.|+
T Consensus 300 g~Tp 303 (477)
T PHA02878 300 KLTP 303 (477)
T ss_pred CCCH
Confidence 9985
No 85
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=98.37 E-value=2e-06 Score=85.03 Aligned_cols=98 Identities=19% Similarity=0.287 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCC---CCcccccccccCCCCcccccccchHHHHHHHHHHHhhhhcccccCC--c
Q 007326 211 KLIAVELYCSHIAACIFYYLATTLPPEQ---EGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGD--V 285 (608)
Q Consensus 211 ~l~~~~~~~~h~~ac~~~~~~~~~~~~~---~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~y~~~~t~ttvGygd--i 285 (608)
.+++..++...+||++||.++....+-. ....|-+.. .-...+..||+|++.|+||+|||. +
T Consensus 40 ~f~~~y~~~~~~Fa~~y~~i~~~~gdl~~~~~~~~~~~Cv-------------~~~~~f~~aF~FSveT~tTIGYG~~~~ 106 (336)
T PF01007_consen 40 LFVLSYLLSWLFFALLYYLIAYSHGDLEPIHADSNWTPCV-------------SNVNSFTSAFLFSVETQTTIGYGSRYP 106 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCCTTTSBTTS-TSE-------------CT-TTHHHHHHHHHHHHTT---SSSEB
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhcccchhcccccCCCCce-------------ecccchhhheeEEEEEEEEeccCCccc
Confidence 3444555666779999999875422111 111121110 113467899999999999999999 6
Q ss_pred ccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 007326 286 HAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKG 321 (608)
Q Consensus 286 ~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~~ 321 (608)
+|..+...+++++-+++|+++.|+++|.+.+-+++.
T Consensus 107 ~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~srP 142 (336)
T PF01007_consen 107 TPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFSRP 142 (336)
T ss_dssp -CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 788889999999999999999999999999998873
No 86
>PHA02730 ankyrin-like protein; Provisional
Probab=98.35 E-value=6.4e-07 Score=95.62 Aligned_cols=74 Identities=16% Similarity=0.153 Sum_probs=63.1
Q ss_pred chhhhhhhhhhhhhhcC---CHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcC--cHHHHHHHHHcCC--CCCccCCCCC
Q 007326 534 KHEAELALKVNSAAYHG---DLYQLEGLIRAGADPNRTDYDGRSPLHLAASRG--YEEIMTFLIQKGV--DINLKGNSIM 606 (608)
Q Consensus 534 ~~~~~~~~~l~~aa~~g---~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~--~~~~v~~Ll~~ga--d~~~~~~~g~ 606 (608)
..+..+.++||.|+..+ +.++++.|+++||+++.+|..|+||||.|+..+ +.+++++|+++|| +++..|..+.
T Consensus 36 ~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d 115 (672)
T PHA02730 36 HIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNIND 115 (672)
T ss_pred hcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCC
Confidence 34456789999999886 589999999999999999999999999999866 7999999999965 4577776555
Q ss_pred C
Q 007326 607 Q 607 (608)
Q Consensus 607 t 607 (608)
+
T Consensus 116 ~ 116 (672)
T PHA02730 116 F 116 (672)
T ss_pred c
Confidence 4
No 87
>PHA02874 ankyrin repeat protein; Provisional
Probab=98.35 E-value=9.2e-07 Score=93.17 Aligned_cols=75 Identities=21% Similarity=0.172 Sum_probs=51.4
Q ss_pred ccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 532 ~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
.+..+....+|++.|+..|..+.++.|++.|++++..+..|.||||.|+..+. +.+++|+ .|+++|.+|..|+|+
T Consensus 183 ~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~-~~i~~Ll-~~~~in~~d~~G~Tp 257 (434)
T PHA02874 183 ANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR-SAIELLI-NNASINDQDIDGSTP 257 (434)
T ss_pred CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCCh-HHHHHHH-cCCCCCCcCCCCCCH
Confidence 33444556677777777777777777777777777777777777777776654 4555555 577777777777763
No 88
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=98.34 E-value=8.2e-07 Score=96.66 Aligned_cols=80 Identities=18% Similarity=0.084 Sum_probs=68.7
Q ss_pred cccccchhhhhhhhhhhhhh--cCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHh--------------cCcHHHHHHHH
Q 007326 529 TFHISKHEAELALKVNSAAY--HGDLYQLEGLIRAGADPNRTDYDGRSPLHLAAS--------------RGYEEIMTFLI 592 (608)
Q Consensus 529 ~~~~~~~~~~~~~~l~~aa~--~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~--------------~~~~~~v~~Ll 592 (608)
...++..+..+.+|+|.|+. .+..++++.|++.|++++.+|..|+||||.|+. .++.+++++|+
T Consensus 307 GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL 386 (764)
T PHA02716 307 GVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLI 386 (764)
T ss_pred CCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHH
Confidence 34455566778899998653 467899999999999999999999999999865 36889999999
Q ss_pred HcCCCCCccCCCCCCC
Q 007326 593 QKGVDINLKGNSIMQM 608 (608)
Q Consensus 593 ~~gad~~~~~~~g~t~ 608 (608)
++|||++.+|..|+|+
T Consensus 387 ~~GADIn~kn~~G~TP 402 (764)
T PHA02716 387 SLGADITAVNCLGYTP 402 (764)
T ss_pred HCCCCCCCcCCCCCCh
Confidence 9999999999999985
No 89
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.33 E-value=6.8e-07 Score=93.73 Aligned_cols=77 Identities=27% Similarity=0.292 Sum_probs=71.1
Q ss_pred cccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCC---CCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCC
Q 007326 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPN---RTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQ 607 (608)
Q Consensus 531 ~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~---~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t 607 (608)
.++..+..+.+|+|.|+..|+..+++.|++.||..+ ..|.+|.||||.|+..|+..+|+.|+++||++..+|..|.|
T Consensus 333 llne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I~~~n~~g~S 412 (929)
T KOG0510|consen 333 LLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADIGVKNKKGKS 412 (929)
T ss_pred ccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCCceeeccccccc
Confidence 356677889999999999999999999999999887 56999999999999999999999999999999999988876
No 90
>PHA02792 ankyrin-like protein; Provisional
Probab=98.30 E-value=1.3e-06 Score=92.38 Aligned_cols=70 Identities=20% Similarity=0.129 Sum_probs=60.9
Q ss_pred hhhhhhhhhhcCCH---HHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 539 LALKVNSAAYHGDL---YQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 539 ~~~~l~~aa~~g~~---~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
..++++.++..... +.++.++++||++|.+|..|.||||.|+..++.+++++|+++|||+|.+|..|.|.
T Consensus 374 ~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~Tp 446 (631)
T PHA02792 374 NIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTC 446 (631)
T ss_pred ChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCH
Confidence 35677766555544 35788899999999999999999999999999999999999999999999999883
No 91
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=98.29 E-value=1.3e-06 Score=95.99 Aligned_cols=72 Identities=25% Similarity=0.424 Sum_probs=35.9
Q ss_pred hhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHc-------CCCCCccCCCCC
Q 007326 535 HEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQK-------GVDINLKGNSIM 606 (608)
Q Consensus 535 ~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~-------gad~~~~~~~g~ 606 (608)
.+....+++|.|+..|+.++++.|++.|++++..|..|.||||+|+..|+.+++++|+++ ||+++..+..|.
T Consensus 111 ~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~ 189 (664)
T PTZ00322 111 RDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLLSRHSQCHFELGANAKPDSFTGK 189 (664)
T ss_pred cCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHhCCCcccccCCCCCccccCCC
Confidence 333444455555555555555555555555555555555555555555555555555544 444444444443
No 92
>PHA02736 Viral ankyrin protein; Provisional
Probab=98.29 E-value=2e-06 Score=76.48 Aligned_cols=70 Identities=20% Similarity=0.243 Sum_probs=62.4
Q ss_pred cccchh-hhhhhhhhhhhhcCCHHHHHHHHH-cCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCc
Q 007326 531 HISKHE-AELALKVNSAAYHGDLYQLEGLIR-AGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINL 600 (608)
Q Consensus 531 ~~~~~~-~~~~~~l~~aa~~g~~~~~~~Ll~-~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~ 600 (608)
.++..+ ....+++|.|+..+..+.++.|+. .|++++..|..|.||||+|+..|+.+++++|+++||++++
T Consensus 83 din~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~~ 154 (154)
T PHA02736 83 DINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQCKV 154 (154)
T ss_pred CccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence 344444 467899999999999999999997 5999999999999999999999999999999999998763
No 93
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=98.28 E-value=8.3e-07 Score=78.55 Aligned_cols=68 Identities=22% Similarity=0.239 Sum_probs=63.8
Q ss_pred hhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCC
Q 007326 540 ALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQ 607 (608)
Q Consensus 540 ~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t 607 (608)
...+..|+..|..++++.|++.+.|+|..|..|-|||-+|+.-+|.+||+.|+..|||++..|+.|.+
T Consensus 194 esALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~ 261 (296)
T KOG0502|consen 194 ESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYW 261 (296)
T ss_pred hhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCcccccccCCc
Confidence 34566799999999999999999999999999999999999999999999999999999999999876
No 94
>PHA03100 ankyrin repeat protein; Provisional
Probab=98.26 E-value=1.7e-06 Score=92.61 Aligned_cols=77 Identities=26% Similarity=0.387 Sum_probs=60.5
Q ss_pred ccccchhhhhhhhhhhhhhcC--CHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCC
Q 007326 530 FHISKHEAELALKVNSAAYHG--DLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIM 606 (608)
Q Consensus 530 ~~~~~~~~~~~~~l~~aa~~g--~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~ 606 (608)
..++..+..+.+++|.|+..+ ..+.++.|+++|++++..|..|.||||.|+..|+.+++++|+++|++++..+..|.
T Consensus 132 ~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~ 210 (480)
T PHA03100 132 ANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETL 210 (480)
T ss_pred CCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCC
Confidence 344445556677888888888 78888888888888888888888888888888888888888888888888777764
No 95
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=98.25 E-value=7.9e-07 Score=63.42 Aligned_cols=50 Identities=32% Similarity=0.430 Sum_probs=32.4
Q ss_pred ccccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHH
Q 007326 530 FHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLA 579 (608)
Q Consensus 530 ~~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a 579 (608)
..++..+....+++|.|+..|..++++.|++.|++++.+|..|+||+|+|
T Consensus 7 ~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 7 ADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA 56 (56)
T ss_dssp --TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred CCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence 45666778888999999999999999999999999999999999999987
No 96
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=98.25 E-value=1.3e-06 Score=66.20 Aligned_cols=65 Identities=29% Similarity=0.427 Sum_probs=59.0
Q ss_pred hhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 543 VNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 543 l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
+.+....|..+.++.....|.++|..- .|++|||+|+-.|..+++++|+..||+++.+|+.|.|+
T Consensus 6 ~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITP 70 (117)
T KOG4214|consen 6 VAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITP 70 (117)
T ss_pred HhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcH
Confidence 445678899999999999998888766 89999999999999999999999999999999999885
No 97
>PHA02798 ankyrin-like protein; Provisional
Probab=98.23 E-value=2e-06 Score=91.94 Aligned_cols=77 Identities=14% Similarity=0.169 Sum_probs=40.8
Q ss_pred cccchhhhhhhhhhhhhhcCC---HHHHHHHHHcCCCCCCCC-CCCChHhhHHHhcCc----HHHHHHHHHcCCCCCccC
Q 007326 531 HISKHEAELALKVNSAAYHGD---LYQLEGLIRAGADPNRTD-YDGRSPLHLAASRGY----EEIMTFLIQKGVDINLKG 602 (608)
Q Consensus 531 ~~~~~~~~~~~~l~~aa~~g~---~~~~~~Ll~~gad~~~~d-~~g~t~L~~a~~~~~----~~~v~~Ll~~gad~~~~~ 602 (608)
+++..+..+.+|+|.++..+. .++++.|++.|++++..+ ..|.||||.+...+. .+++++|+++||+++..+
T Consensus 137 dvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~ 216 (489)
T PHA02798 137 DTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKEN 216 (489)
T ss_pred CccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCC
Confidence 334444445555555555554 555566666666555553 345556655554332 345556666666665555
Q ss_pred CCCCC
Q 007326 603 NSIMQ 607 (608)
Q Consensus 603 ~~g~t 607 (608)
..|.|
T Consensus 217 ~~~~~ 221 (489)
T PHA02798 217 KSHKK 221 (489)
T ss_pred ccccc
Confidence 54443
No 98
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.23 E-value=1.1e-06 Score=88.13 Aligned_cols=72 Identities=33% Similarity=0.392 Sum_probs=68.0
Q ss_pred hhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 537 ~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
..+.+.+|+|+..|..++++.|+++|.+++.+|.+||||||.|+..|..+.+++|+++||+.+.++..|.|+
T Consensus 196 ~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p 267 (527)
T KOG0505|consen 196 ARGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETP 267 (527)
T ss_pred cccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCC
Confidence 337788999999999999999999999999999999999999999999999999999999999999988874
No 99
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.18 E-value=3.5e-06 Score=88.99 Aligned_cols=73 Identities=29% Similarity=0.310 Sum_probs=63.8
Q ss_pred hhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCC---------C--------------CCCChHhhHHHhcCcHHHHHHH
Q 007326 535 HEAELALKVNSAAYHGDLYQLEGLIRAGADPNRT---------D--------------YDGRSPLHLAASRGYEEIMTFL 591 (608)
Q Consensus 535 ~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~---------d--------------~~g~t~L~~a~~~~~~~~v~~L 591 (608)
.+-.+.+++|.|....+.+.++.|++.|||++++ | +.|..||..|++.++.+++++|
T Consensus 180 eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlL 259 (782)
T KOG3676|consen 180 EEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLL 259 (782)
T ss_pred HhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHH
Confidence 3445678899999999999999999999999875 1 2467899999999999999999
Q ss_pred HHcCCCCCccCCCCCC
Q 007326 592 IQKGVDINLKGNSIMQ 607 (608)
Q Consensus 592 l~~gad~~~~~~~g~t 607 (608)
+++|||+|++|.+|.|
T Consensus 260 l~~gAd~~aqDS~GNT 275 (782)
T KOG3676|consen 260 LAHGADPNAQDSNGNT 275 (782)
T ss_pred HhcCCCCCccccCCCh
Confidence 9999999999999987
No 100
>PHA02876 ankyrin repeat protein; Provisional
Probab=98.18 E-value=3.1e-06 Score=94.51 Aligned_cols=71 Identities=27% Similarity=0.413 Sum_probs=63.2
Q ss_pred hhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 538 ELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 538 ~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
+....+..+...++.+.++.|++.|+++|..|..|+||||.|+..|+.+++++|+++|||+|..+..|.|+
T Consensus 144 ~~~~~l~~~i~~~~~~i~k~Ll~~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~ 214 (682)
T PHA02876 144 EYMKLIKERIQQDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSV 214 (682)
T ss_pred hhhHHHHHHHHCCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCH
Confidence 34556777888999999999999999999999999999999999999999999999999999998888763
No 101
>PHA02989 ankyrin repeat protein; Provisional
Probab=98.17 E-value=4.8e-06 Score=89.20 Aligned_cols=81 Identities=14% Similarity=0.131 Sum_probs=59.7
Q ss_pred ccccccchhhhhhhhhhhhhhc---CCHHHHHHHHHcCCCC-CCCCCCCChHhhHHHhc--CcHHHHHHHHHcCCCCCc-
Q 007326 528 ITFHISKHEAELALKVNSAAYH---GDLYQLEGLIRAGADP-NRTDYDGRSPLHLAASR--GYEEIMTFLIQKGVDINL- 600 (608)
Q Consensus 528 ~~~~~~~~~~~~~~~l~~aa~~---g~~~~~~~Ll~~gad~-~~~d~~g~t~L~~a~~~--~~~~~v~~Ll~~gad~~~- 600 (608)
..++++..+..+.+|++.|+.. +..+.++.|+++|+++ +..|..|.||||.|+.. ++.+++++|+++|||++.
T Consensus 97 ~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~ 176 (494)
T PHA02989 97 FGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEK 176 (494)
T ss_pred CCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccc
Confidence 3444555566667777765433 5678888888888888 78888888888887643 577888888888888887
Q ss_pred cCCCCCCC
Q 007326 601 KGNSIMQM 608 (608)
Q Consensus 601 ~~~~g~t~ 608 (608)
.+..|.|+
T Consensus 177 ~~~~g~tp 184 (494)
T PHA02989 177 TSLYGLTP 184 (494)
T ss_pred ccccCCCh
Confidence 56677764
No 102
>PHA02989 ankyrin repeat protein; Provisional
Probab=98.16 E-value=4e-06 Score=89.80 Aligned_cols=79 Identities=15% Similarity=0.184 Sum_probs=66.1
Q ss_pred cccc-cchhhhhhhhhhhhhh--cCCHHHHHHHHHcCCCCCC-CCCCCChHhhHHHhcC----cHHHHHHHHHcCCCCCc
Q 007326 529 TFHI-SKHEAELALKVNSAAY--HGDLYQLEGLIRAGADPNR-TDYDGRSPLHLAASRG----YEEIMTFLIQKGVDINL 600 (608)
Q Consensus 529 ~~~~-~~~~~~~~~~l~~aa~--~g~~~~~~~Ll~~gad~~~-~d~~g~t~L~~a~~~~----~~~~v~~Ll~~gad~~~ 600 (608)
.+++ +..+..+.+|+|.++. .++.++++.|+++|++++. .+..|.||||.|+..+ +.+++++|+++|||+|.
T Consensus 134 Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~ 213 (494)
T PHA02989 134 GINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIET 213 (494)
T ss_pred CCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccc
Confidence 4455 4556677889998754 4688999999999999998 6789999999987654 89999999999999999
Q ss_pred cCCCCCC
Q 007326 601 KGNSIMQ 607 (608)
Q Consensus 601 ~~~~g~t 607 (608)
+|..|.|
T Consensus 214 ~~~~~~t 220 (494)
T PHA02989 214 NNNGSES 220 (494)
T ss_pred cCCcccc
Confidence 9987765
No 103
>PHA02917 ankyrin-like protein; Provisional
Probab=98.15 E-value=4.5e-06 Score=91.28 Aligned_cols=58 Identities=22% Similarity=0.291 Sum_probs=53.5
Q ss_pred CHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 551 DLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 551 ~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
..+.++.|+.+|+++|.+|..|.||||.|+..++.+++++|+++|||+|.+|..|.|+
T Consensus 431 ~~~~v~~Ll~~GAdIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~GAdin~~d~~G~T~ 488 (661)
T PHA02917 431 ILSTINICLPYLKDINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTC 488 (661)
T ss_pred hHHHHHHHHHCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCH
Confidence 4667899999999999999999999999999999999999999999999999999884
No 104
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=98.11 E-value=3.7e-06 Score=77.51 Aligned_cols=76 Identities=25% Similarity=0.346 Sum_probs=67.9
Q ss_pred ccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCC-CCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCC
Q 007326 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTD-YDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQ 607 (608)
Q Consensus 532 ~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d-~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t 607 (608)
++..+..+..++..|+..|+.+.++.|++.|+|+|... -.+.||||.|+..|+.+++++|++.||.....+.-|+|
T Consensus 38 vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvgrT 114 (396)
T KOG1710|consen 38 VNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVGRT 114 (396)
T ss_pred hhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHHHHHHhccCccccccchhhh
Confidence 44556667788889999999999999999999998764 45899999999999999999999999999999988877
No 105
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=98.10 E-value=6.7e-06 Score=90.52 Aligned_cols=70 Identities=34% Similarity=0.534 Sum_probs=65.8
Q ss_pred hhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 539 LALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 539 ~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
....++.++..|+.+.++.|++.|+++|..|..|+||||+|+..|+.+++++|+++|||+|.+|..|+|+
T Consensus 82 ~~~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~Tp 151 (664)
T PTZ00322 82 LTVELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTP 151 (664)
T ss_pred hHHHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCH
Confidence 3456788999999999999999999999999999999999999999999999999999999999999884
No 106
>PHA02876 ankyrin repeat protein; Provisional
Probab=98.09 E-value=5.7e-06 Score=92.46 Aligned_cols=79 Identities=20% Similarity=0.294 Sum_probs=64.8
Q ss_pred ccccchhhhhhhhhhhhhhcCC-HHHHHHHHHcCCCCCCCCCCCChHhhHHHhcC-cHHHHHHHHHcCCCCCccCCCCCC
Q 007326 530 FHISKHEAELALKVNSAAYHGD-LYQLEGLIRAGADPNRTDYDGRSPLHLAASRG-YEEIMTFLIQKGVDINLKGNSIMQ 607 (608)
Q Consensus 530 ~~~~~~~~~~~~~l~~aa~~g~-~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~-~~~~v~~Ll~~gad~~~~~~~g~t 607 (608)
..++..+....+++|.|+..+. ...++.|++.|+++|.+|..|+||||.|+..+ +.+++++|+++|||+|.+|..|.|
T Consensus 399 ad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~d~~g~t 478 (682)
T PHA02876 399 ADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQY 478 (682)
T ss_pred CCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCCCCCCCC
Confidence 3444445556678888876555 45688899999999999999999999999876 679999999999999999999988
Q ss_pred C
Q 007326 608 M 608 (608)
Q Consensus 608 ~ 608 (608)
+
T Consensus 479 p 479 (682)
T PHA02876 479 P 479 (682)
T ss_pred H
Confidence 4
No 107
>PHA02917 ankyrin-like protein; Provisional
Probab=98.09 E-value=6.1e-06 Score=90.28 Aligned_cols=81 Identities=16% Similarity=0.102 Sum_probs=65.9
Q ss_pred ccccccchhhhhhhhhhhh--hhcCCHHHHHHHHHcCCCCCCCCC---CC-----------ChHhhHHHh----------
Q 007326 528 ITFHISKHEAELALKVNSA--AYHGDLYQLEGLIRAGADPNRTDY---DG-----------RSPLHLAAS---------- 581 (608)
Q Consensus 528 ~~~~~~~~~~~~~~~l~~a--a~~g~~~~~~~Ll~~gad~~~~d~---~g-----------~t~L~~a~~---------- 581 (608)
..++++..+..+.++++.+ +..+..++++.|+++|+++|..|. .| .||||+|+.
T Consensus 125 ~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~ 204 (661)
T PHA02917 125 HGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTR 204 (661)
T ss_pred cCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhccccccccc
Confidence 3455566666778888743 467899999999999999986653 34 599999975
Q ss_pred -cCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 582 -RGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 582 -~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
.++.+++++|+++|||+|.+|..|.|+
T Consensus 205 ~~~~~eiv~~Li~~Gadvn~~d~~G~Tp 232 (661)
T PHA02917 205 AYVRPEVVKCLINHGIKPSSIDKNYCTA 232 (661)
T ss_pred ccCcHHHHHHHHHCCCCcccCCCCCCcH
Confidence 458899999999999999999999984
No 108
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.04 E-value=1e-05 Score=85.15 Aligned_cols=78 Identities=24% Similarity=0.336 Sum_probs=42.9
Q ss_pred ccccchhhhhhhhhhhhhhcCCHHHHHHHHH-cC-CCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCC---ccCCC
Q 007326 530 FHISKHEAELALKVNSAAYHGDLYQLEGLIR-AG-ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN---LKGNS 604 (608)
Q Consensus 530 ~~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~-~g-ad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~---~~~~~ 604 (608)
+.++....+...|+|.|+..|....++.|++ .| ...|..|-+|.||||+|+..||.+++++|++.||+.+ ..|.+
T Consensus 297 a~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~d 376 (929)
T KOG0510|consen 297 ASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSD 376 (929)
T ss_pred CcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccC
Confidence 3344444555555666666666666655555 33 4445555556666666666666666666666666555 23455
Q ss_pred CCC
Q 007326 605 IMQ 607 (608)
Q Consensus 605 g~t 607 (608)
|.|
T Consensus 377 g~T 379 (929)
T KOG0510|consen 377 GNT 379 (929)
T ss_pred Cch
Confidence 544
No 109
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=98.04 E-value=9.5e-06 Score=80.23 Aligned_cols=73 Identities=27% Similarity=0.315 Sum_probs=66.6
Q ss_pred hhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCC-CCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 536 EAELALKVNSAAYHGDLYQLEGLIRAGADPNRTD-YDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 536 ~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d-~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
..++...+|..+..++.+.+-.|+..||++|-.+ ..|.||||.|+..|+.--+++|+-.|||+++.|.+|+|+
T Consensus 130 ~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP 203 (669)
T KOG0818|consen 130 AKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTP 203 (669)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcH
Confidence 3556677888999999999999999999999987 569999999999999999999999999999999999985
No 110
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.03 E-value=4.5e-06 Score=83.90 Aligned_cols=74 Identities=28% Similarity=0.402 Sum_probs=67.4
Q ss_pred cchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCC
Q 007326 533 SKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIM 606 (608)
Q Consensus 533 ~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~ 606 (608)
+.-..+..+.+|.++...+.+++++|+++|+++|..|..||||||.|+.-||..++++|+++||+.-+.+..|.
T Consensus 67 ~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~ 140 (527)
T KOG0505|consen 67 NLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGN 140 (527)
T ss_pred cccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCC
Confidence 44556778889999999999999999999999999999999999999999999999999999999888877664
No 111
>PHA02730 ankyrin-like protein; Provisional
Probab=97.99 E-value=2.1e-05 Score=84.24 Aligned_cols=78 Identities=10% Similarity=0.113 Sum_probs=62.1
Q ss_pred ccccchhhhhhhhhhhhhhcCC----HHHHHHHHHcCC--CCCCCCCCCChHhhH---HHhcC---------cHHHHHHH
Q 007326 530 FHISKHEAELALKVNSAAYHGD----LYQLEGLIRAGA--DPNRTDYDGRSPLHL---AASRG---------YEEIMTFL 591 (608)
Q Consensus 530 ~~~~~~~~~~~~~l~~aa~~g~----~~~~~~Ll~~ga--d~~~~d~~g~t~L~~---a~~~~---------~~~~v~~L 591 (608)
+.++.. ..+.+|+|.|+..+. .++++.|+++|+ ++|.+|..|.||||. |...+ ..+++++|
T Consensus 370 AdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~L 448 (672)
T PHA02730 370 ATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDIL 448 (672)
T ss_pred CCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHH
Confidence 334443 466799998887775 899999999997 689999999999994 33221 23569999
Q ss_pred HHcCCCCCccCCCCCCC
Q 007326 592 IQKGVDINLKGNSIMQM 608 (608)
Q Consensus 592 l~~gad~~~~~~~g~t~ 608 (608)
+++|||+|++|..|.|+
T Consensus 449 Is~GADINakD~~G~TP 465 (672)
T PHA02730 449 SKYMDDIDMIDNENKTL 465 (672)
T ss_pred HhcccchhccCCCCCCH
Confidence 99999999999999985
No 112
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=97.98 E-value=8.1e-06 Score=91.19 Aligned_cols=77 Identities=22% Similarity=0.270 Sum_probs=70.6
Q ss_pred ccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 532 ~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
.+......-+++|.+...+...+++.++++|++++.++..|.||||.|+..|+.++|++|+++|||++++|+.|+|+
T Consensus 500 ~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TP 576 (1143)
T KOG4177|consen 500 DNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTP 576 (1143)
T ss_pred cCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCCh
Confidence 33444556678899999999999999999999999999999999999999999999999999999999999999995
No 113
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=97.96 E-value=8.7e-06 Score=57.62 Aligned_cols=37 Identities=41% Similarity=0.625 Sum_probs=30.7
Q ss_pred CChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 572 GRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 572 g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
|+||+|.|+..|+.+++++|+++|+|+|.+|.+|+|+
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~ 37 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTP 37 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--H
T ss_pred CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCH
Confidence 7899999999999999999999999999999999883
No 114
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=97.94 E-value=1.4e-05 Score=90.12 Aligned_cols=72 Identities=24% Similarity=0.238 Sum_probs=65.8
Q ss_pred hhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCC--------------CCCChHhhHHHhcCcHHHHHHHHHcCCCCCccC
Q 007326 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTD--------------YDGRSPLHLAASRGYEEIMTFLIQKGVDINLKG 602 (608)
Q Consensus 537 ~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d--------------~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~ 602 (608)
..+.+|+|.|+..++.++++.|+++|++++.++ ..|.||||.|+..|+.+++++|+++|||+|.+|
T Consensus 126 ~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d 205 (743)
T TIGR00870 126 TPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTAD 205 (743)
T ss_pred CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHh
Confidence 356789999999999999999999999998653 358999999999999999999999999999999
Q ss_pred CCCCCC
Q 007326 603 NSIMQM 608 (608)
Q Consensus 603 ~~g~t~ 608 (608)
..|+|.
T Consensus 206 ~~g~T~ 211 (743)
T TIGR00870 206 SLGNTL 211 (743)
T ss_pred hhhhHH
Confidence 999873
No 115
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=97.93 E-value=2.2e-05 Score=74.49 Aligned_cols=80 Identities=29% Similarity=0.395 Sum_probs=71.1
Q ss_pred cccccchhhhhhhhhhhhhhcCC-----HHHHHHHHHcCC---CCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCc
Q 007326 529 TFHISKHEAELALKVNSAAYHGD-----LYQLEGLIRAGA---DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINL 600 (608)
Q Consensus 529 ~~~~~~~~~~~~~~l~~aa~~g~-----~~~~~~Ll~~ga---d~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~ 600 (608)
....+..+..+.++++.++..+. .++++.|++.|+ ..+..|..|.||||+|+..|+.+++++|++.|++++.
T Consensus 96 ~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~ 175 (235)
T COG0666 96 GADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNS 175 (235)
T ss_pred CCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCcc
Confidence 34456677778899999999999 999999999999 6677799999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 007326 601 KGNSIMQM 608 (608)
Q Consensus 601 ~~~~g~t~ 608 (608)
.+..|.|.
T Consensus 176 ~~~~g~t~ 183 (235)
T COG0666 176 RNSYGVTA 183 (235)
T ss_pred cccCCCcc
Confidence 99888873
No 116
>PHA02792 ankyrin-like protein; Provisional
Probab=97.92 E-value=4.9e-05 Score=80.62 Aligned_cols=67 Identities=18% Similarity=0.032 Sum_probs=58.3
Q ss_pred hhhhhhhcCCHHHHHHHHHcCCCCCCCCCCC--ChHhhHHHhcCcHH---HHHHHHHcCCCCCccCCCCCCC
Q 007326 542 KVNSAAYHGDLYQLEGLIRAGADPNRTDYDG--RSPLHLAASRGYEE---IMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 542 ~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g--~t~L~~a~~~~~~~---~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
.++.|+..++.+.++.|+++||+++..|..| .||||+|+..+..+ ++++|+++|||+|.+|..|.|+
T Consensus 342 ~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TP 413 (631)
T PHA02792 342 KYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSI 413 (631)
T ss_pred HHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcch
Confidence 4667889999999999999999999999775 69999987766543 5789999999999999999985
No 117
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=97.88 E-value=1.7e-05 Score=82.90 Aligned_cols=71 Identities=28% Similarity=0.396 Sum_probs=67.4
Q ss_pred hhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCC
Q 007326 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQ 607 (608)
Q Consensus 537 ~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t 607 (608)
..+..++|+|+..|+.+.++.++.++..+|.....|.||||.|+++||.+.+.+|+++|+|+-+.|+++.|
T Consensus 80 ~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t 150 (854)
T KOG0507|consen 80 TKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKET 150 (854)
T ss_pred ccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCccccc
Confidence 66778999999999999999999999999999999999999999999999999999999999999988876
No 118
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=97.85 E-value=0.00012 Score=77.27 Aligned_cols=55 Identities=16% Similarity=0.443 Sum_probs=51.5
Q ss_pred HHHHHHHHhhhhcccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 007326 266 YITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK 320 (608)
Q Consensus 266 Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~ 320 (608)
+..|+||+.+++||+|||++.|.|..+++++++..++|+=++..+++.++..+..
T Consensus 116 f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~ 170 (433)
T KOG1418|consen 116 FSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLAD 170 (433)
T ss_pred cchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4599999999999999999999999999999999999999999999999887764
No 119
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.84 E-value=6.7e-05 Score=79.87 Aligned_cols=107 Identities=21% Similarity=0.310 Sum_probs=92.4
Q ss_pred HHcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecch-hhh---cCCC---cccEEEEe
Q 007326 408 IRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV-SIL---CNIP---QPYTVQVC 480 (608)
Q Consensus 408 ~~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~-~~~---~~~~---~~~~~~a~ 480 (608)
.+++...+..|++|++.|++.+.+|.+.+|...+.....+|++..+....+|+.|-.. +++ .+.| +...++|.
T Consensus 113 rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~~~~~~g~~~llk~V~~G~~~tSllSiLd~l~~~ps~~~~i~akA~ 192 (1158)
T KOG2968|consen 113 RHIETLSLDAGDYIFKPGESDDSIYVVISGELTVHIRNGDGKEYLLKTVPPGGSFTSLLSILDSLPGFPSLSRTIAAKAA 192 (1158)
T ss_pred hhhhhhcccCCceeccCCCCCceEEEEeccceEEEecCCCCceeeEeeccCCCchHhHHHHHHhccCCCcccceeeeeee
Confidence 6778889999999999999999999999999999999999999999999999755443 333 3444 45789999
Q ss_pred eceeeEEechhhHHHHHHHhhhcHHHHHHHHhcc
Q 007326 481 ELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 514 (608)
Q Consensus 481 ~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~l~~~ 514 (608)
++|.+..+|.+.|.+...++|+-..++++...-+
T Consensus 193 t~~tv~~~p~~sF~~~~~k~P~s~iriiQvvmTR 226 (1158)
T KOG2968|consen 193 TDCTVARIPYTSFRESFHKNPESSIRIIQVVMTR 226 (1158)
T ss_pred cCceEEEeccchhhhhhccChHHHHHHHHHHHHH
Confidence 9999999999999999999999888887766554
No 120
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=97.77 E-value=6.7e-05 Score=63.43 Aligned_cols=76 Identities=30% Similarity=0.468 Sum_probs=66.1
Q ss_pred cchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 533 SKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 533 ~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
...+..+..+++.++..+..+.++.++..|++++..+..|.||+|.|+..++.+++++|+++|.+++..|..|.|+
T Consensus 34 ~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~ 109 (126)
T cd00204 34 NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTP 109 (126)
T ss_pred CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCH
Confidence 3445566688899999999999999999999888888899999999999999999999999999999888888763
No 121
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=97.77 E-value=2.3e-05 Score=77.35 Aligned_cols=76 Identities=33% Similarity=0.437 Sum_probs=68.2
Q ss_pred cchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHc-CCCCCccCCCCCCC
Q 007326 533 SKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQK-GVDINLKGNSIMQM 608 (608)
Q Consensus 533 ~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~-gad~~~~~~~g~t~ 608 (608)
+..+.+...++.+|+..|++..++.+.-.|.|.+..|++.+|+||.|+..|+.+.+++|++. ++|++.+|+=|+|+
T Consensus 500 ~~~~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtP 576 (622)
T KOG0506|consen 500 GPRENDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTP 576 (622)
T ss_pred CcccccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCc
Confidence 34455667788899999999999999999999999999999999999999999999999986 89999999988875
No 122
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=97.72 E-value=2.4e-05 Score=82.29 Aligned_cols=76 Identities=20% Similarity=0.188 Sum_probs=69.0
Q ss_pred cchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCC-CCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 533 SKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDY-DGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 533 ~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~-~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
+..+.-+.+.+|.++..+..+.++.|+++|+|++.+|. .|+||||-|...|+.||+-+||++|+...++|.+|.++
T Consensus 46 nikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsp 122 (1267)
T KOG0783|consen 46 NIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSP 122 (1267)
T ss_pred hHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCH
Confidence 34556677889999999999999999999999999995 59999999999999999999999999999999999763
No 123
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=97.70 E-value=0.00036 Score=67.87 Aligned_cols=101 Identities=16% Similarity=0.236 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC---CcccccccccCCCCcccccccchHHHHHHHHHHHhhhhcccccCCc
Q 007326 209 IVKLIAVELYCSHIAACIFYYLATTLPPEQE---GYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDV 285 (608)
Q Consensus 209 ~~~l~~~~~~~~h~~ac~~~~~~~~~~~~~~---~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~y~~~~t~ttvGygdi 285 (608)
++.+.+.+++...+||++||.++...++-.. +.+|.+.. .-...+..||-|++-|=||+|||--
T Consensus 66 lliF~~sf~~SWl~Fg~iwwlIA~~hGDL~~~~~~~~~tpCV-------------~nV~sf~sAFLFSiETQtTIGYG~R 132 (400)
T KOG3827|consen 66 LLIFSLSFVLSWLFFGVIWWLIAYAHGDLEPDPPGENHTPCV-------------MNVHSFTSAFLFSIETQTTIGYGFR 132 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCcccCCCCcCCCcce-------------eeccchhhhheeeeeeeeeeecccc
Confidence 3334444455556699999999986544221 22333321 1234567999999999999999985
Q ss_pred ccC--ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Q 007326 286 HAV--NLREMVFIMIYVSFDMILGAYLIGNMTALIVKGS 322 (608)
Q Consensus 286 ~p~--~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~~~ 322 (608)
.+. =+...++.++-+++|+++-|+++|.+.+.+.+.+
T Consensus 133 ~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKiarPk 171 (400)
T KOG3827|consen 133 YVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKIARPK 171 (400)
T ss_pred ccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 544 4666677777889999999999999998887633
No 124
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=97.68 E-value=0.00011 Score=62.01 Aligned_cols=70 Identities=39% Similarity=0.548 Sum_probs=59.9
Q ss_pred hhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCC
Q 007326 538 ELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQ 607 (608)
Q Consensus 538 ~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t 607 (608)
.+.++++.|+..+..+.++.|+..|++.+..+..|.+|+|.|+..++.+++++|+++|++++..+..|.|
T Consensus 6 ~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~ 75 (126)
T cd00204 6 DGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNT 75 (126)
T ss_pred CCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCC
Confidence 3557888888889889999999999888888888999999999999999999999998888888877765
No 125
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=97.61 E-value=0.00037 Score=66.01 Aligned_cols=55 Identities=24% Similarity=0.446 Sum_probs=41.1
Q ss_pred HHHHHHHHHhhhhcccccCCcccCC--------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007326 265 SYITSMYASVVTMTTVGYGDVHAVN--------LREMVFIMIYVSFDMILGAYLIGNMTALIV 319 (608)
Q Consensus 265 ~Y~~s~y~~~~t~ttvGygdi~p~~--------~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~ 319 (608)
.|.+|+||+++|+||+|+||..+.. +.-..+..+++++|+.+++-.++.+.-.+.
T Consensus 186 syfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~NllvLrf~ 248 (350)
T KOG4404|consen 186 SYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLVLRFM 248 (350)
T ss_pred chhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3779999999999999999987642 233456777788888888777666554443
No 126
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=97.43 E-value=0.00043 Score=65.53 Aligned_cols=73 Identities=36% Similarity=0.448 Sum_probs=65.5
Q ss_pred hhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCc-----HHHHHHHHHcCC---CCCccCCCCCC
Q 007326 536 EAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGY-----EEIMTFLIQKGV---DINLKGNSIMQ 607 (608)
Q Consensus 536 ~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~-----~~~v~~Ll~~ga---d~~~~~~~g~t 607 (608)
+.....+++.++..+....+..++..|++++..+..|.||||.|+..++ .+++++|+++|+ +.+..|.+|.|
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~t 149 (235)
T COG0666 70 DLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNT 149 (235)
T ss_pred CccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCc
Confidence 3445677888999999999999999999999999999999999999999 999999999999 66666999988
Q ss_pred C
Q 007326 608 M 608 (608)
Q Consensus 608 ~ 608 (608)
+
T Consensus 150 p 150 (235)
T COG0666 150 P 150 (235)
T ss_pred h
Confidence 4
No 127
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=97.43 E-value=0.00018 Score=68.16 Aligned_cols=52 Identities=19% Similarity=0.378 Sum_probs=45.4
Q ss_pred HHHHHHHHHhhhhcccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007326 265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTA 316 (608)
Q Consensus 265 ~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~ 316 (608)
++.-||||+++.+||+|||-.+|.|..+|+|+|+..++|+-+.-.++..++.
T Consensus 80 kF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~gE 131 (350)
T KOG4404|consen 80 KFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIGE 131 (350)
T ss_pred ccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHHH
Confidence 4567999999999999999999999999999999999998877766655544
No 128
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.42 E-value=0.00028 Score=67.89 Aligned_cols=61 Identities=26% Similarity=0.350 Sum_probs=55.9
Q ss_pred hhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCc
Q 007326 540 ALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINL 600 (608)
Q Consensus 540 ~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~ 600 (608)
...+..||..|+.+.++.|.+.|+++|++|.....||-+|+..||.+.|++|+++||--.-
T Consensus 37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~r 97 (516)
T KOG0511|consen 37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSR 97 (516)
T ss_pred hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccc
Confidence 4456779999999999999999999999999999999999999999999999999985543
No 129
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=97.39 E-value=0.0016 Score=59.20 Aligned_cols=96 Identities=9% Similarity=0.041 Sum_probs=77.7
Q ss_pred HHHHHHHHcccccccCCCeE-EccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecchhhhcCCCcccEEEEe
Q 007326 402 FINQIVIRLHEEFFLPGEVI-MEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVC 480 (608)
Q Consensus 402 ~l~~l~~~~~~~~~~~g~~I-~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~ 480 (608)
.++.|....++..+++|..+ +.+....+.++++.+|.+.+.. .|| ..+....+..+||-...+.+....+..+|.
T Consensus 14 L~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsirr--~d~--ll~~t~~aP~IlGl~~~~~~~~~~~~l~ae 89 (207)
T PRK11832 14 LDKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLRR--EEN--VLIGITQAPYIMGLADGLMKNDIPYKLISE 89 (207)
T ss_pred HHHHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEEe--cCC--eEEEeccCCeEeecccccCCCCceEEEEEc
Confidence 34556667788899999997 5555555789999999999942 343 577888899999998877666666889999
Q ss_pred eceeeEEechhhHHHHHHHhh
Q 007326 481 ELCRLLRIDKQSFTNIIDIYF 501 (608)
Q Consensus 481 ~~~~l~~l~~~~~~~l~~~~~ 501 (608)
++|+++.+|.++|.++++++.
T Consensus 90 ~~c~~~~i~~~~~~~iie~~~ 110 (207)
T PRK11832 90 GNCTGYHLPAKQTITLIEQNQ 110 (207)
T ss_pred CccEEEEeeHHHHHHHHHHhc
Confidence 999999999999999999875
No 130
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.35 E-value=0.00029 Score=74.88 Aligned_cols=70 Identities=21% Similarity=0.278 Sum_probs=64.5
Q ss_pred hhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCC--CCccCCCCCCC
Q 007326 539 LALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVD--INLKGNSIMQM 608 (608)
Q Consensus 539 ~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad--~~~~~~~g~t~ 608 (608)
+..|+..||..+..++++.|+++|||++.+|..|+|.||..+..-..+.-.+++++||+ ...+|.+|.|+
T Consensus 240 GEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTP 311 (782)
T KOG3676|consen 240 GEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTP 311 (782)
T ss_pred ccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCCh
Confidence 34689999999999999999999999999999999999999988777888999999999 88899999885
No 131
>PLN03223 Polycystin cation channel protein; Provisional
Probab=97.30 E-value=0.061 Score=61.03 Aligned_cols=54 Identities=22% Similarity=0.177 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhee--------ccCCCcCeehHHHHHHHHHHHHHHhhc
Q 007326 71 RWYRAWTKFILIWAVYSSIFTPVEFGF--------FRGLSKNLYVLDIVGQIAFLFDIVLQF 124 (608)
Q Consensus 71 ~~~~~w~~~~~~~~~~~~~~~p~~~~f--------~~~~~~~~~~~~~~~~~if~~d~~l~f 124 (608)
.+....+++++++++|.++--...+.- ..-+.+.|-++|++..++.+.=+++.|
T Consensus 1173 yfvLacEIIFVLFILYfIyrEIkEI~k~KK~RG~~laYFKSfWNwLEIl~IlLS~AAIvLYF 1234 (1634)
T PLN03223 1173 WVRFAMEILLAIGAVYSVYEEAMDFGSSKKTRGSYLAYFLSGWNYVDFASIGLHLATIMMWF 1234 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHhccchHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555554443332210 011235678888877776666665543
No 132
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=97.25 E-value=0.0057 Score=51.88 Aligned_cols=106 Identities=16% Similarity=0.171 Sum_probs=87.7
Q ss_pred CCCHHHHHHHHHH-cccccccCCCeEEccCC-ccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecchhhhcCC---
Q 007326 397 GCSSEFINQIVIR-LHEEFFLPGEVIMEKGN-VVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNI--- 471 (608)
Q Consensus 397 ~l~~~~l~~l~~~-~~~~~~~~g~~I~~~g~-~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~--- 471 (608)
+.+....++++.+ .+...+.+|+.-..||. +.|.+-++++|++.+.. +|. .+..+.|-++.....+.+..
T Consensus 14 ~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~---~g~--fLH~I~p~qFlDSPEW~s~~~s~ 88 (153)
T PF04831_consen 14 KVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSC---DGR--FLHYIYPYQFLDSPEWESLRPSE 88 (153)
T ss_pred CCCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEE---CCE--eeEeecccccccChhhhccccCC
Confidence 4688888898887 77788999999999986 56799999999999876 553 68888999888877776542
Q ss_pred --CcccEEEEeeceeeEEechhhHHHHHHHhhhcHHHH
Q 007326 472 --PQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKV 507 (608)
Q Consensus 472 --~~~~~~~a~~~~~l~~l~~~~~~~l~~~~~~~~~~~ 507 (608)
.-.+|+.|.++|+.+.=+|+.+..++.+.|-+..-+
T Consensus 89 ~~~FQVTitA~~~Cryl~W~R~kL~~~l~~~~~L~~vF 126 (153)
T PF04831_consen 89 DDKFQVTITAEEDCRYLCWPREKLYLLLAKDPFLAAVF 126 (153)
T ss_pred CCeEEEEEEEcCCcEEEEEEHHHHHHHHhhCHHHHHHH
Confidence 346899999999999999999999999988655433
No 133
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.22 E-value=0.00043 Score=69.90 Aligned_cols=67 Identities=28% Similarity=0.400 Sum_probs=45.2
Q ss_pred ccccccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHc
Q 007326 528 ITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQK 594 (608)
Q Consensus 528 ~~~~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~ 594 (608)
+...+...+..+.+++|.|+.-|+...++.|+.+|+++..++..||+|||.|++.|+.+++.-++.+
T Consensus 44 ~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q~i~~vlr~ 110 (560)
T KOG0522|consen 44 VSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQIITEVLRH 110 (560)
T ss_pred hhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHHHHHHHHHH
Confidence 4445555666667777777777777777777777777777777777777777777777666555443
No 134
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=97.21 E-value=0.00056 Score=63.51 Aligned_cols=67 Identities=24% Similarity=0.259 Sum_probs=57.2
Q ss_pred hhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCC-CCCC
Q 007326 541 LKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN-SIMQ 607 (608)
Q Consensus 541 ~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~-~g~t 607 (608)
.++.-+...++.+.+..|+..-.++|.+|..|.++|..|+..|+.+.|++|+++|||+|.... .+.|
T Consensus 14 ~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YT 81 (396)
T KOG1710|consen 14 SPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYT 81 (396)
T ss_pred hHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCccccccccc
Confidence 345556778888888999988888999999999999999999999999999999999997642 4444
No 135
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=96.96 E-value=0.00087 Score=67.73 Aligned_cols=74 Identities=16% Similarity=0.213 Sum_probs=65.0
Q ss_pred hhhhhhhhhhhhhhcCCHHHHHHHHHcCCC--CCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 535 HEAELALKVNSAAYHGDLYQLEGLIRAGAD--PNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 535 ~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad--~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
++.+....+|+|+..|+-+++++++++|.. .+..|..|.|+||.|++.++..++.+|++.||...-.|.+|.|+
T Consensus 895 ~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~kg~tp 970 (1004)
T KOG0782|consen 895 QGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGASLRKTDSKGKTP 970 (1004)
T ss_pred eCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhheecccCCCCh
Confidence 344556678999999999999999999854 36677889999999999999999999999999999999999884
No 136
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=96.90 E-value=0.0021 Score=65.48 Aligned_cols=65 Identities=28% Similarity=0.315 Sum_probs=60.1
Q ss_pred hhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCC
Q 007326 535 HEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599 (608)
Q Consensus 535 ~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~ 599 (608)
.+.++.+++|.||..|+....+.|+=+|+|+..+|..|+|+|-+|.+.|..+|...|+++|+-.+
T Consensus 657 ~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sqec~d~llq~gcp~e 721 (749)
T KOG0705|consen 657 GEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQECIDVLLQYGCPDE 721 (749)
T ss_pred cCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccHHHHHHHHHcCCCcc
Confidence 45667889999999999999999999999999999999999999999999999999999998644
No 137
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=96.88 E-value=0.0017 Score=65.66 Aligned_cols=68 Identities=29% Similarity=0.356 Sum_probs=57.2
Q ss_pred hhhhhhhhcCCHHHHHHHH--HcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 541 LKVNSAAYHGDLYQLEGLI--RAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 541 ~~l~~aa~~g~~~~~~~Ll--~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
.++|.+....+.+.....+ +.+..++..|-.|+||||+|+..|+.+.++.|+.+|||+..+|++||++
T Consensus 22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~ 91 (560)
T KOG0522|consen 22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSP 91 (560)
T ss_pred cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccH
Confidence 4577777777776665533 3456778899999999999999999999999999999999999999984
No 138
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=96.82 E-value=0.0015 Score=73.83 Aligned_cols=71 Identities=18% Similarity=0.092 Sum_probs=59.8
Q ss_pred hhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcC---------cHHHHHHHHHcCCCC-------Ccc
Q 007326 538 ELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRG---------YEEIMTFLIQKGVDI-------NLK 601 (608)
Q Consensus 538 ~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~---------~~~~v~~Ll~~gad~-------~~~ 601 (608)
...+|++.|+..++.+.++.|++.|+|++.+|..|+||||+|+..+ ...+.++++..+++. ++.
T Consensus 174 ~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~ 253 (743)
T TIGR00870 174 HGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVIL 253 (743)
T ss_pred ccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhc
Confidence 4568899999999999999999999999999999999999999886 234667777766554 667
Q ss_pred CCCCCCC
Q 007326 602 GNSIMQM 608 (608)
Q Consensus 602 ~~~g~t~ 608 (608)
|.+|.|+
T Consensus 254 N~~g~TP 260 (743)
T TIGR00870 254 NHQGLTP 260 (743)
T ss_pred CCCCCCc
Confidence 8899884
No 139
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=96.79 E-value=0.00084 Score=70.69 Aligned_cols=77 Identities=22% Similarity=0.110 Sum_probs=70.7
Q ss_pred ccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 532 ~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
.+.++....+.+|.|+..|+.+..+.|++..+-....|..|.+|||+|+..|+.+++++|+.++..+|+.+..|.|.
T Consensus 42 ~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tp 118 (854)
T KOG0507|consen 42 HNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETP 118 (854)
T ss_pred ccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCc
Confidence 44456677889999999999999999999999999999999999999999999999999999999999999998874
No 140
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=96.79 E-value=0.0023 Score=65.21 Aligned_cols=80 Identities=26% Similarity=0.271 Sum_probs=63.7
Q ss_pred cccccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCC----CCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCC
Q 007326 529 TFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADP----NRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNS 604 (608)
Q Consensus 529 ~~~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~----~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~ 604 (608)
..++...+..+...+..|....++..+-.|+.+|... .-.+.+|+|+||+|+..|+..+.++|+=+|+|+.++|.+
T Consensus 614 LaPl~~te~~lgqqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~ 693 (749)
T KOG0705|consen 614 LAPLPCTEEPLGQQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAH 693 (749)
T ss_pred cCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccC
Confidence 3444555555556677777888888888899988433 233567899999999999999999999999999999999
Q ss_pred CCCC
Q 007326 605 IMQM 608 (608)
Q Consensus 605 g~t~ 608 (608)
|.|.
T Consensus 694 g~t~ 697 (749)
T KOG0705|consen 694 GRTA 697 (749)
T ss_pred Cchh
Confidence 9873
No 141
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.77 E-value=0.022 Score=67.20 Aligned_cols=106 Identities=19% Similarity=0.187 Sum_probs=72.0
Q ss_pred eehHHHHHHHHHHHHHHhhceeeEEeCCCcEEeeccHHHHHHHhhc-cchhHHHhhccHHHHHhhcCchhHHHHHHHHHH
Q 007326 105 LYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRS-SFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRL 183 (608)
Q Consensus 105 ~~~~~~~~~~if~~d~~l~f~t~~~~~~~~~~i~~~~~i~~~y~~~-~f~iDll~~lP~~~~~~~~~~~~~~~~l~llrl 183 (608)
+++.+.++..+|.+|+.+.... .+| +.|+++ |.++|.+-+. +.++.........+.+||.+|+
T Consensus 475 l~~~~~vF~~lF~~Em~~ki~a-----------l~~----~~yF~~~~n~fD~~iv~-l~~~~~~~~~~~g~svLr~frl 538 (1592)
T KOG2301|consen 475 LYLGNVVFTGLFTVEMILKIYA-----------LGP----RNYFRRGWNIFDLIIVL-LSLLELLLKNVYGLSVLRSFRL 538 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------cCc----HHHHhhhcchheEEEEe-hhhHHhcccchHHHHHHHHHHH
Confidence 5677888888999999988442 222 667777 5599988777 6555555555567888999999
Q ss_pred HHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHH
Q 007326 184 YRVRKVSQFFHKMEKDIRI-NYMFSRIVKLIAVELYCSHIAACI 226 (608)
Q Consensus 184 ~rl~r~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~h~~ac~ 226 (608)
+|++|+.+++..+++.... ......+..+++++.+++.++|-+
T Consensus 539 lRIfkl~k~wp~l~~lv~~i~ns~~~l~~L~l~l~i~i~Ifa~~ 582 (1592)
T KOG2301|consen 539 LRIFKLIKSWPTLNDLVKSIFNSGKALGNLVLFLFIFIFIFAAI 582 (1592)
T ss_pred HHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHh
Confidence 9999998888777764432 223345556655555555555544
No 142
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=96.74 E-value=0.0011 Score=72.96 Aligned_cols=73 Identities=30% Similarity=0.317 Sum_probs=67.6
Q ss_pred hhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCC
Q 007326 535 HEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQ 607 (608)
Q Consensus 535 ~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t 607 (608)
........+|.++..+....++.|++.|+++|..|..|++|+|.+...|+...+.+|+++||+.++.|.+|.+
T Consensus 652 ~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~ 724 (785)
T KOG0521|consen 652 VLCIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKL 724 (785)
T ss_pred hhhcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcc
Confidence 3344567899999999999999999999999999999999999999999999999999999999999998875
No 143
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=96.74 E-value=0.0048 Score=63.94 Aligned_cols=113 Identities=16% Similarity=0.279 Sum_probs=88.9
Q ss_pred HHhHhhhcccccccCCCHHHHHHHHHHccccc-ccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCe
Q 007326 383 TLYLPYIEKVPLFKGCSSEFINQIVIRLHEEF-FLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSS 461 (608)
Q Consensus 383 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~-~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~ 461 (608)
+...++..+.|-|++++-...++|+..|-... -.+|.+|+..|+.-|+.++|+.|.|++.. ++|+. ..+.-|+.
T Consensus 277 eqLLeFMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~--PdGk~---e~l~mGnS 351 (1283)
T KOG3542|consen 277 EQLLEFMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVK--PDGKR---EELKMGNS 351 (1283)
T ss_pred HHHHHHHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEec--CCCce---EEeecccc
Confidence 44567788899999999999999999876655 47899999999999999999999999987 67764 56778999
Q ss_pred ecchhhhcCCCcccEEE-EeeceeeEEechhhHHHHHHHh
Q 007326 462 FGEVSILCNIPQPYTVQ-VCELCRLLRIDKQSFTNIIDIY 500 (608)
Q Consensus 462 fGe~~~~~~~~~~~~~~-a~~~~~l~~l~~~~~~~l~~~~ 500 (608)
||...-....-..--++ -+.+|+...+..+++..++..-
T Consensus 352 FG~~PT~dkqym~G~mRTkVDDCqFVciaqqDycrIln~v 391 (1283)
T KOG3542|consen 352 FGAEPTPDKQYMIGEMRTKVDDCQFVCIAQQDYCRILNTV 391 (1283)
T ss_pred cCCCCCcchhhhhhhhheecccceEEEeehhhHHHHHHHH
Confidence 99765433222222233 3678999999999999888654
No 144
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=96.65 E-value=0.0025 Score=63.67 Aligned_cols=58 Identities=29% Similarity=0.369 Sum_probs=53.5
Q ss_pred hhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHc
Q 007326 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQK 594 (608)
Q Consensus 537 ~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~ 594 (608)
..+.+++|.|+..|....++.|.-.|||++..|..|.||+.+|...||.++.+.|++.
T Consensus 165 ekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~laeRl~e~ 222 (669)
T KOG0818|consen 165 EKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHELAERLVEI 222 (669)
T ss_pred ccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHHHHHHHHH
Confidence 3467899999999999999999999999999999999999999999999998877653
No 145
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=96.60 E-value=0.0023 Score=39.66 Aligned_cols=32 Identities=28% Similarity=0.240 Sum_probs=29.3
Q ss_pred hhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCC
Q 007326 539 LALKVNSAAYHGDLYQLEGLIRAGADPNRTDY 570 (608)
Q Consensus 539 ~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~ 570 (608)
+.+|+|.|+..+..++++.|+++|++++.+|+
T Consensus 2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~ 33 (33)
T PF00023_consen 2 GNTPLHYAAQRGHPDIVKLLLKHGADINARDN 33 (33)
T ss_dssp SBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred cccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence 46799999999999999999999999998873
No 146
>PF13606 Ank_3: Ankyrin repeat
Probab=96.53 E-value=0.0025 Score=38.50 Aligned_cols=29 Identities=28% Similarity=0.299 Sum_probs=26.4
Q ss_pred hhhhhhhhhhcCCHHHHHHHHHcCCCCCC
Q 007326 539 LALKVNSAAYHGDLYQLEGLIRAGADPNR 567 (608)
Q Consensus 539 ~~~~l~~aa~~g~~~~~~~Ll~~gad~~~ 567 (608)
+.+++|.|+..|+.++++.|+++|+|+|.
T Consensus 2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~ 30 (30)
T PF13606_consen 2 GNTPLHLAASNGNIEIVKYLLEHGADVNA 30 (30)
T ss_pred CCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence 45789999999999999999999999974
No 147
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.29 E-value=0.047 Score=64.64 Aligned_cols=112 Identities=18% Similarity=0.115 Sum_probs=67.0
Q ss_pred cCeehHHHHHHHHHHHHHHhhceeeEEeCCCcEEeeccHHHHHHHhhc-cchhHHHhhccHHHHHhhcCc-hhHHHHHHH
Q 007326 103 KNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRS-SFIIDLFSCMPWDLIYKASGR-KEAVRYLLW 180 (608)
Q Consensus 103 ~~~~~~~~~~~~if~~d~~l~f~t~~~~~~~~~~i~~~~~i~~~y~~~-~f~iDll~~lP~~~~~~~~~~-~~~~~~l~l 180 (608)
..+.+.|++...+|++|+++.... +.- .-|+++ |.++|++.+.-..+.+.+... ...++.||.
T Consensus 872 ~~L~y~D~~Ft~iFt~Em~lK~ia------------~Gf---~~y~rn~w~~lDf~Vv~vslisl~~~~~~~~~ik~lr~ 936 (1592)
T KOG2301|consen 872 GILEYADYIFTYIFTFEMLLKWIA------------YGF---FFYFRNAWNWLDFVVVIVSLISLIASLKILSLIKSLRI 936 (1592)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH------------hHH---HHHHhhHHhhhhHHHhhhHHHHHHHhhhhhhHHHHHHH
Confidence 346789999999999999999432 222 229999 779999877766555443332 334556666
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007326 181 IRLYRVRKVSQFFHKMEKDIR-INYMFSRIVKLIAVELYCSHIAACIFYY 229 (608)
Q Consensus 181 lrl~rl~r~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~h~~ac~~~~ 229 (608)
+|.+|-+|....+.+++.... +-..+..++...+..+++..+||++-.-
T Consensus 937 lRaLRPLR~i~r~~~mr~Vv~~l~~a~~~I~nv~lV~li~~fiFai~gv~ 986 (1592)
T KOG2301|consen 937 LRALRPLRALSRFPGMRVVVLALFGGLPEIFNVLLVCLIFWFIFAIMGVQ 986 (1592)
T ss_pred HHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666655555433211 1122334455555555555556665443
No 148
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=96.29 E-value=0.0039 Score=62.10 Aligned_cols=67 Identities=22% Similarity=0.291 Sum_probs=59.0
Q ss_pred ccccchhhhhhhhhhhhhhcCCHHHHHHHHHc-CCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCC
Q 007326 530 FHISKHEAELALKVNSAAYHGDLYQLEGLIRA-GADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596 (608)
Q Consensus 530 ~~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~-gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~ga 596 (608)
.++...+-+-.+.+|.||..|+.+++++|++. +.+++.+|.+|+|||.-|...+|.+++++|-+.-.
T Consensus 530 ~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h~~v~k~L~~~~~ 597 (622)
T KOG0506|consen 530 MDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKHKEVVKLLEEAQY 597 (622)
T ss_pred ccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCcHHHHHHHHHHhc
Confidence 34556667778899999999999999999975 89999999999999999999999999999977643
No 149
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=95.97 E-value=0.0096 Score=61.79 Aligned_cols=92 Identities=13% Similarity=0.182 Sum_probs=78.9
Q ss_pred HhhhcccccccCCCHHHHHHHHHHcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecch
Q 007326 386 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV 465 (608)
Q Consensus 386 ~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~ 465 (608)
.+.|.+...|+++-...++.++...+.+.++...++|+.|+.+.+.|++++|+|-+.. ..+.|-..||..
T Consensus 36 ~~~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~g----------qi~mp~~~fgkr 105 (1283)
T KOG3542|consen 36 YEQLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVEG----------QIYMPYGCFGKR 105 (1283)
T ss_pred HHHHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEeec----------ceecCccccccc
Confidence 4578888999999999999999999999999999999999999999999999987642 345666678876
Q ss_pred hhhcCCCcccEEEEeeceeeEEech
Q 007326 466 SILCNIPQPYTVQVCELCRLLRIDK 490 (608)
Q Consensus 466 ~~~~~~~~~~~~~a~~~~~l~~l~~ 490 (608)
.|+.|...+-.+++++.+.++.
T Consensus 106 ---~g~~r~~nclllq~semivid~ 127 (1283)
T KOG3542|consen 106 ---TGQNRTHNCLLLQESEMIVIDY 127 (1283)
T ss_pred ---cccccccceeeecccceeeeec
Confidence 5788999999999999988843
No 150
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=95.87 E-value=0.014 Score=34.04 Aligned_cols=29 Identities=59% Similarity=1.003 Sum_probs=26.2
Q ss_pred CCChHhhHHHhcCcHHHHHHHHHcCCCCC
Q 007326 571 DGRSPLHLAASRGYEEIMTFLIQKGVDIN 599 (608)
Q Consensus 571 ~g~t~L~~a~~~~~~~~v~~Ll~~gad~~ 599 (608)
.|.||+|+|+..++.++++.|+++|.+++
T Consensus 1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~~ 29 (30)
T smart00248 1 DGRTPLHLAAENGNLEVVKLLLDKGADIN 29 (30)
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 37899999999999999999999998765
No 151
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=95.55 E-value=0.0042 Score=65.41 Aligned_cols=46 Identities=24% Similarity=0.503 Sum_probs=38.8
Q ss_pred HHHHHHHHhhhhcccccCCcccCChhhH--------HHHHHHHHHHHHHHHHHH
Q 007326 266 YITSMYASVVTMTTVGYGDVHAVNLREM--------VFIMIYVSFDMILGAYLI 311 (608)
Q Consensus 266 Y~~s~y~~~~t~ttvGygdi~p~~~~e~--------~~~~~~~~~g~~~~a~~i 311 (608)
|+.|+||+++++||+||||+.|.+...+ .+..++.++|....+...
T Consensus 243 f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 296 (433)
T KOG1418|consen 243 FIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVL 296 (433)
T ss_pred eEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHh
Confidence 5689999999999999999999998766 577777778887777655
No 152
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.36 E-value=0.11 Score=56.63 Aligned_cols=108 Identities=16% Similarity=0.112 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHhhhhheecc-CCCcCeehHHHHHHHHHHHHHHhhceeeEEeCCCcEEeeccHHHHHHHhhc-cchh
Q 007326 77 TKFILIWAVYSSIFTPVEFGFFR-GLSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRS-SFII 154 (608)
Q Consensus 77 ~~~~~~~~~~~~~~~p~~~~f~~-~~~~~~~~~~~~~~~if~~d~~l~f~t~~~~~~~~~~i~~~~~i~~~y~~~-~f~i 154 (608)
+.++.+++..+++.....-.-.+ .....+.+.++.+.++|++|.++.....- .++|.+. |--+
T Consensus 1444 d~fit~ii~LnvVtms~ehyqqp~sldealkycny~ft~vfV~EaV~klvafG---------------~rrFfkdrwnql 1508 (1956)
T KOG2302|consen 1444 DQFITFIICLNVVTMSEEHYQQPTSLDEALKYCNYRFTAVFVLEAVLKLVAFG---------------ERRFFKDRWNQL 1508 (1956)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcccHHHHhhhcceeeeehhHHHHHHHHHHHh---------------HHHHHhhhhhhh
Confidence 44445544455555444221111 12344677788888999999998865431 2677776 6577
Q ss_pred HHHhhccHHHHHh---------hcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007326 155 DLFSCMPWDLIYK---------ASGRKEAVRYLLWIRLYRVRKVSQFFHKMEKD 199 (608)
Q Consensus 155 Dll~~lP~~~~~~---------~~~~~~~~~~l~llrl~rl~r~~~~~~~~~~~ 199 (608)
|+.-++-...-+. ..-+...+|+.|++|+-|++|+.+.-.+++..
T Consensus 1509 dlaivlls~mgitleeie~naalpinptiirimrvlriarvlkllkmatgmral 1562 (1956)
T KOG2302|consen 1509 DLAIVLLSVMGITLEEIEINAALPINPTIIRIMRVLRIARVLKLLKMATGMRAL 1562 (1956)
T ss_pred hHHHHHHHHhcccHhheeecccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8754433221110 11122356666666666666666665555543
No 153
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=95.33 E-value=0.051 Score=47.81 Aligned_cols=72 Identities=19% Similarity=0.121 Sum_probs=60.5
Q ss_pred cccchhhhhhhhhhhhhhcCCHHHHHHHHHcC-CCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccC
Q 007326 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAG-ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKG 602 (608)
Q Consensus 531 ~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~g-ad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~ 602 (608)
+++..+.-.++++..|+..|..+.+.+|+.+| +++...|..|.+++.+|-..|..+.++.|.+.-.+....+
T Consensus 4 ~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p~ 76 (223)
T KOG2384|consen 4 NINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSHPM 76 (223)
T ss_pred CccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCCCcc
Confidence 45666777888999999999999999999999 8999999999999999999999999999988755544443
No 154
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=95.24 E-value=0.034 Score=56.04 Aligned_cols=61 Identities=21% Similarity=0.243 Sum_probs=51.0
Q ss_pred hcCCHHHHHHHHHcCCCCCC------CCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 548 YHGDLYQLEGLIRAGADPNR------TDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 548 ~~g~~~~~~~Ll~~gad~~~------~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
.......++.|.+++.+.|- .++.-.|+||+|+..|..++|..+|+.|+|+-++|..|.|+
T Consensus 400 k~~~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtp 466 (591)
T KOG2505|consen 400 KKPEPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTP 466 (591)
T ss_pred ccCchhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCc
Confidence 34445678888888877754 35678899999999999999999999999999999999985
No 155
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=95.05 E-value=0.019 Score=63.36 Aligned_cols=72 Identities=24% Similarity=0.316 Sum_probs=63.5
Q ss_pred hhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCcc-CCCCCCC
Q 007326 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK-GNSIMQM 608 (608)
Q Consensus 537 ~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~-~~~g~t~ 608 (608)
....++|..+|..|+.+.++.|+..|+++..+|..|.+||..|+..||...|+-|+.+.||+++. |+.+.||
T Consensus 755 ~n~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~ 827 (2131)
T KOG4369|consen 755 PNIKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTM 827 (2131)
T ss_pred ccccccccccccCccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCce
Confidence 44456788899999999999999999999999999999999999999999999999999999875 4566665
No 156
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=93.96 E-value=0.016 Score=61.91 Aligned_cols=44 Identities=30% Similarity=0.469 Sum_probs=40.9
Q ss_pred CCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCC-CCCC
Q 007326 564 DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN-SIMQ 607 (608)
Q Consensus 564 d~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~-~g~t 607 (608)
-.|..|..|+++||.|++.+..++++.|++||+|++.+|. .|+|
T Consensus 44 ~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~t 88 (1267)
T KOG0783|consen 44 LANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYT 88 (1267)
T ss_pred hhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccch
Confidence 3688999999999999999999999999999999999996 7776
No 157
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.70 E-value=4.1 Score=47.06 Aligned_cols=89 Identities=10% Similarity=0.055 Sum_probs=47.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhhhheeccCCCcCeehHHHHHHHHHHHHHHhhceeeEEeCCCcEEeeccHHHHHHHhh
Q 007326 70 NRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLR 149 (608)
Q Consensus 70 s~~~~~w~~~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~~if~~d~~l~f~t~~~~~~~~~~i~~~~~i~~~y~~ 149 (608)
++.-.+|..++..+.+..++...+...|... +..+-++=++-.+.+.+|-+=....+ +.+ .=+++++.-|-.
T Consensus 790 APIvkFw~~~l~yi~FL~lftYvlLv~~~~~-Ps~~Ew~~~~~iftl~~E~vRq~~~s--e~~-----~l~~kv~v~f~d 861 (1381)
T KOG3614|consen 790 APIVKFWLNVLSYIAFLLLFTYVLLVDFQPS-PSMWEWILFAWIFTLFLEEVRQIFIS--ESG-----LLPQKVRVYFAD 861 (1381)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHheeccCCC-CCccchhHHHHHHHHHHHHHHHHhcC--CCc-----chhhHHHHHHHH
Confidence 4455677777666666555555555555443 33332222333344455555443333 111 113444444445
Q ss_pred ccchhHHHhhccHHHHH
Q 007326 150 SSFIIDLFSCMPWDLIY 166 (608)
Q Consensus 150 ~~f~iDll~~lP~~~~~ 166 (608)
.|+.+|+++++-|.+-+
T Consensus 862 ~wN~~d~~ai~~F~vG~ 878 (1381)
T KOG3614|consen 862 FWNLIDLLAILLFLVGP 878 (1381)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 58899999998877654
No 158
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=93.55 E-value=0.065 Score=59.38 Aligned_cols=62 Identities=31% Similarity=0.450 Sum_probs=39.3
Q ss_pred hhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccC
Q 007326 541 LKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKG 602 (608)
Q Consensus 541 ~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~ 602 (608)
+.+..+|..|..++++.|+..|++--.++-...|||.+|+.-|+.+++++|+.+|+++|.+.
T Consensus 826 t~lSlacsggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrt 887 (2131)
T KOG4369|consen 826 TMLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRT 887 (2131)
T ss_pred ceEEEecCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhccccccccc
Confidence 34555666666666666666666666666556666666666666666666666666666543
No 159
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.33 E-value=11 Score=41.80 Aligned_cols=42 Identities=14% Similarity=0.305 Sum_probs=33.6
Q ss_pred hhCCHHHHHHHHHHHhHhhhc-----ccccccCCCHHHHHHHHHHcc
Q 007326 370 QDIPISIRAKISQTLYLPYIE-----KVPLFKGCSSEFINQIVIRLH 411 (608)
Q Consensus 370 ~~lp~~l~~~i~~~~~~~~l~-----~~~~f~~l~~~~l~~l~~~~~ 411 (608)
++||+.||+.|..+...++.. ...++++||++...++..++-
T Consensus 371 ~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~ 417 (727)
T KOG0498|consen 371 RQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLC 417 (727)
T ss_pred ccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHh
Confidence 799999999998887666554 456788999998888887653
No 160
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=91.43 E-value=11 Score=41.49 Aligned_cols=130 Identities=12% Similarity=0.166 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhcCCCCCCCcccccccccCC
Q 007326 177 YLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAAC-----IFYYLATTLPPEQEGYTWIGSLKMGD 251 (608)
Q Consensus 177 ~l~llrl~rl~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~h~~ac-----~~~~~~~~~~~~~~~~~w~~~~~~~~ 251 (608)
++.++|++-++.+..++.-+.- .+......++++++.+++++.-|+| .|||.......+ .|.....-.
T Consensus 474 V~S~lrl~~i~t~n~~lGPlqI--SlGrmv~Di~kF~~I~~lvl~aF~iGl~qLy~yy~~~~~~~~----~~~~~~~~~- 546 (822)
T KOG3609|consen 474 VLSFLKLFYIFTMNPSLGPLQI--SLGRMVGDIYKFLFIFVLVLVAFSIGLNQLYDYYLNRKTMKI----DQDYTKTTD- 546 (822)
T ss_pred HHHHHHHHHHhhccccccchhh--hHHHHHHHHHHHHHHHHHHHHHHHhccchHhhhhcchhhccc----ccccccccc-
Confidence 3455555555555444443332 2334444566665555555444444 455554433222 111110000
Q ss_pred CCcccccccchHHHHHHHHHHHhhhhcccccCCccc-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 007326 252 YSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHA-VNLREMVFIMIYVSFDMILGAYLIGNMTALIVK 320 (608)
Q Consensus 252 ~~~~~~~~~~~~~~Y~~s~y~~~~t~ttvGygdi~p-~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~ 320 (608)
.+ +....=..+++|++-+++-++--++.- +...|-+..+++.+..++....+++.+++++++
T Consensus 547 -~f------sti~eS~~tLFWsiFglv~~~~~~l~~~Hkf~e~ig~~lfG~Y~vi~vIVLLNmLIAMmnn 609 (822)
T KOG3609|consen 547 -SF------STIGESSKTLFWSIFGLVVLGSVVLPYKHKFTEFIGEVLFGVYNVILIIVLLNLLIAMMSN 609 (822)
T ss_pred -cc------ccHHHHHHHHHHHHHhcccccceecccchhHHHHHHHHHHHhhheeeHHHHHHHHHHHHHh
Confidence 11 112333478999998776544222211 123333333333333333334455555555554
No 161
>KOG3599 consensus Ca2+-modulated nonselective cation channel polycystin [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=91.15 E-value=26 Score=39.59 Aligned_cols=21 Identities=19% Similarity=0.139 Sum_probs=13.6
Q ss_pred CeehHHHHHHHHHHHHHHhhc
Q 007326 104 NLYVLDIVGQIAFLFDIVLQF 124 (608)
Q Consensus 104 ~~~~~~~~~~~if~~d~~l~f 124 (608)
.|.++|+++..+..+=++++.
T Consensus 499 ~wN~ld~~i~~ls~~~~~~~~ 519 (798)
T KOG3599|consen 499 KWNWLDLAIVLLSVVLLVLMI 519 (798)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 466677777777666666553
No 162
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=90.78 E-value=0.11 Score=57.54 Aligned_cols=44 Identities=34% Similarity=0.489 Sum_probs=38.9
Q ss_pred HHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCcc
Q 007326 558 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601 (608)
Q Consensus 558 Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~ 601 (608)
..-.|..++.+|..||||||+|+.+|+..++..|.+.|++.+..
T Consensus 627 ~~~~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~ 670 (975)
T KOG0520|consen 627 ISADGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAV 670 (975)
T ss_pred EeecccccccccCCCCcccchHhhcCHHHHHHHHHHhccccccc
Confidence 34568889999999999999999999999999999999887643
No 163
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=90.74 E-value=0.63 Score=40.49 Aligned_cols=58 Identities=17% Similarity=0.279 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHhhhhcccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 007326 262 FWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK 320 (608)
Q Consensus 262 ~~~~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~ 320 (608)
.......++|+++.+++.-| ++..|.+...|++.+++.++++++.+...+++++.+..
T Consensus 41 ~~~~~~~~~~~~~~~~~~q~-~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~ 98 (148)
T PF00060_consen 41 WRFSLSNSFWYTFGTLLQQG-SSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTV 98 (148)
T ss_dssp HHHHHHHHHHHCCCCCHHHH-H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcccHHHHHHHHHHhhcccc-ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34567789999988888744 78999999999999999999999999999999998865
No 164
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=90.66 E-value=11 Score=39.42 Aligned_cols=22 Identities=27% Similarity=0.176 Sum_probs=12.7
Q ss_pred cCeehHHHHHHHHHHHHHHhhc
Q 007326 103 KNLYVLDIVGQIAFLFDIVLQF 124 (608)
Q Consensus 103 ~~~~~~~~~~~~if~~d~~l~f 124 (608)
+.|.++|++..++.++=+++.+
T Consensus 242 ~~WN~~e~~ii~ls~~~i~~~~ 263 (425)
T PF08016_consen 242 SFWNWLELLIILLSLAVIVLYF 263 (425)
T ss_pred hcCcHHHHHHHHHHHHHHHHHH
Confidence 4566777776655555444443
No 165
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=86.75 E-value=1.7 Score=47.50 Aligned_cols=61 Identities=25% Similarity=0.170 Sum_probs=47.0
Q ss_pred hhhhhhhcCCHHHHHHHHHcCCCC----------CCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccC
Q 007326 542 KVNSAAYHGDLYQLEGLIRAGADP----------NRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKG 602 (608)
Q Consensus 542 ~l~~aa~~g~~~~~~~Ll~~gad~----------~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~ 602 (608)
.+..|...+..+.++.++.+.... ...-.-+.||+.+||..++.||++.|+.+|+++..+.
T Consensus 91 ALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~PH 161 (822)
T KOG3609|consen 91 ALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIPH 161 (822)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCCc
Confidence 455677788888888888764333 1223457899999999999999999999999987653
No 166
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=85.69 E-value=1.8 Score=44.69 Aligned_cols=63 Identities=21% Similarity=0.305 Sum_probs=56.2
Q ss_pred ccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHc
Q 007326 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQK 594 (608)
Q Consensus 532 ~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~ 594 (608)
+...+..+.+.+|.|+..++..+++++.+.|+.....|..|.||-.-|...|..+++.+|-.+
T Consensus 927 ld~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~r 989 (1004)
T KOG0782|consen 927 LDMADETGETALHKAACQRNRAVCQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLESR 989 (1004)
T ss_pred HHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhhh
Confidence 344455667889999999999999999999999999999999999999999999999998765
No 167
>KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=84.45 E-value=2.4 Score=44.53 Aligned_cols=96 Identities=23% Similarity=0.272 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccCCCCcccccccchHHHHHHHHHHHhhhhcccccCCcccCChh
Q 007326 212 LIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLR 291 (608)
Q Consensus 212 l~~~~~~~~h~~ac~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~y~~~~t~ttvGygdi~p~~~~ 291 (608)
+.+.+.+.+|+.|-+.|++-...|.+.- ...+-. ++.+-..+.-.|+||+--.+..-|-|.-+|.+..
T Consensus 572 LW~lv~~SVhvVal~lYlLDrfSPFgRF--------k~~ds~----~~ee~alnlssAmWF~WGVLLNSGigEgtPRSfS 639 (993)
T KOG4440|consen 572 LWLLVGLSVHVVALMLYLLDRFSPFGRF--------KVNDSE----EEEEDALNLSSAMWFSWGVLLNSGIGEGTPRSFS 639 (993)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccce--------eeccCc----cchhhhcchhhhHHHHhHhhhccccCCCCCcchh
Confidence 3445567789999999998776554321 111000 0112223456899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007326 292 EMVFIMIYVSFDMILGAYLIGNMTALIV 319 (608)
Q Consensus 292 e~~~~~~~~~~g~~~~a~~i~~i~~~~~ 319 (608)
-+++.+++.=+.|++.|-..+++++.+.
T Consensus 640 ARvLGmVWaGFaMIiVASYTANLAAFLV 667 (993)
T KOG4440|consen 640 ARVLGMVWAGFAMIIVASYTANLAAFLV 667 (993)
T ss_pred HHHHHHHHhhhheeeehhhhhhhhhhee
Confidence 9999999999999988888888887653
No 168
>COG4709 Predicted membrane protein [Function unknown]
Probab=81.38 E-value=10 Score=33.83 Aligned_cols=73 Identities=21% Similarity=0.313 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhc----cccHHHHHhhC--CHHHHHHHHHHHhHhhhcccccccCCCHH
Q 007326 328 RDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYES----SYTEASVLQDI--PISIRAKISQTLYLPYIEKVPLFKGCSSE 401 (608)
Q Consensus 328 ~~~~~~~~~~m~~~~l~~~l~~~v~~y~~~~~~~----~~~~~~~l~~l--p~~l~~~i~~~~~~~~l~~~~~f~~l~~~ 401 (608)
.+-++++++|++ ++|++.++.+..||+..+.+ +.+|+++.++| |+++-.|+..+.-.+..+.-|-+++.+..
T Consensus 4 ~efL~eL~~yL~--~Lp~~~r~e~m~dyeehF~~a~~~GksE~EI~~~LG~P~eiA~ei~s~~~~k~~~~~~~~~n~~~a 81 (195)
T COG4709 4 TEFLNELEQYLE--GLPREERREIMYDYEEHFREAQEAGKSEEEIAKDLGDPKEIAAEILSERGIKKEEVKPTQKNVRRA 81 (195)
T ss_pred HHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHhCCHHHHHHHHHHHccchHHhccCcccchHHH
Confidence 355677788885 69999999999999877753 56699999977 67777777777766666666666665544
Q ss_pred H
Q 007326 402 F 402 (608)
Q Consensus 402 ~ 402 (608)
.
T Consensus 82 i 82 (195)
T COG4709 82 I 82 (195)
T ss_pred H
Confidence 3
No 169
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=80.46 E-value=1.6 Score=48.72 Aligned_cols=52 Identities=25% Similarity=0.259 Sum_probs=43.0
Q ss_pred HHHHcCCCCCCCC--CCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 557 GLIRAGADPNRTD--YDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 557 ~Ll~~gad~~~~d--~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
.-...|++.|..+ ..|.|+||.|+..+....+++|++.|+++|.+|..|.|+
T Consensus 639 ~~~~~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~p 692 (785)
T KOG0521|consen 639 TALAHGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTP 692 (785)
T ss_pred hhhcchhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCc
Confidence 3345566666543 467899999999999999999999999999999999874
No 170
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=80.38 E-value=1.1 Score=45.63 Aligned_cols=44 Identities=27% Similarity=0.359 Sum_probs=40.5
Q ss_pred hhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHH
Q 007326 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAA 580 (608)
Q Consensus 537 ~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~ 580 (608)
....++||+|+..|+.+.+..+++.|+|+...|-.|+||-.+++
T Consensus 428 ~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~ 471 (591)
T KOG2505|consen 428 YLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA 471 (591)
T ss_pred cccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence 33567899999999999999999999999999999999999886
No 171
>PLN03223 Polycystin cation channel protein; Provisional
Probab=79.79 E-value=1.2e+02 Score=36.04 Aligned_cols=17 Identities=29% Similarity=0.176 Sum_probs=12.9
Q ss_pred HHHhhc-cchhHHHhhcc
Q 007326 145 LRYLRS-SFIIDLFSCMP 161 (608)
Q Consensus 145 ~~y~~~-~f~iDll~~lP 161 (608)
+.|+++ |-|+|++.++-
T Consensus 1208 laYFKSfWNwLEIl~IlL 1225 (1634)
T PLN03223 1208 LAYFLSGWNYVDFASIGL 1225 (1634)
T ss_pred hhHhccchHHHHHHHHHH
Confidence 689998 66999955443
No 172
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=79.34 E-value=15 Score=33.26 Aligned_cols=30 Identities=7% Similarity=-0.002 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 007326 204 YMFSRIVKLIAVELYCSHIAACIFYYLATT 233 (608)
Q Consensus 204 ~~~~~~~~l~~~~~~~~h~~ac~~~~~~~~ 233 (608)
....++..++..+++..++.++..+.-...
T Consensus 95 ~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~ 124 (200)
T PF00520_consen 95 PDLFKFILLLFIVLLFFACIGYQLFGGSDN 124 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTS-
T ss_pred ccccccccccccccccccchhheecccccc
Confidence 345678888888888888888988877653
No 173
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=78.93 E-value=13 Score=33.74 Aligned_cols=55 Identities=18% Similarity=0.430 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh----ccccHHHHHhhC--CHHHHHHHHHHH
Q 007326 328 RDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYE----SSYTEASVLQDI--PISIRAKISQTL 384 (608)
Q Consensus 328 ~~~~~~~~~~m~~~~l~~~l~~~v~~y~~~~~~----~~~~~~~~l~~l--p~~l~~~i~~~~ 384 (608)
++-+++++++++ ++|++-++.+.+||+...+ ++.+|+++.++| |+++-+++..+.
T Consensus 4 ~efL~~L~~~L~--~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~~ 64 (181)
T PF08006_consen 4 NEFLNELEKYLK--KLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAEY 64 (181)
T ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence 455677788886 5999999999999988775 356799999987 677767766554
No 174
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=77.34 E-value=4.8 Score=29.58 Aligned_cols=44 Identities=18% Similarity=0.279 Sum_probs=31.5
Q ss_pred ccccCCCeEEccCCccC-eEEEEEeeEEEEEEeccCCcceeeEeeCCCCee
Q 007326 413 EFFLPGEVIMEKGNVVD-QLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 413 ~~~~~g~~I~~~g~~~~-~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
..++||+..-..-.+.. .+++|++|++.+.. +|+ ...+++||.+
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~---~~~---~~~l~~Gd~~ 47 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTV---DGE---RVELKPGDAI 47 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEEE---TTE---EEEEETTEEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEEE---ccE---EeEccCCEEE
Confidence 35677776655554555 89999999999874 343 4678888865
No 175
>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=76.51 E-value=30 Score=38.60 Aligned_cols=33 Identities=15% Similarity=0.375 Sum_probs=28.8
Q ss_pred ccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007326 286 HAVNLREMVFIMIYVSFDMILGAYLIGNMTALI 318 (608)
Q Consensus 286 ~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~ 318 (608)
.|+.+..++++.++.++++++.|...+++++.+
T Consensus 630 nPKgtTskiMv~VWAfFavifLAsYTANLAAfM 662 (1258)
T KOG1053|consen 630 NPKGTTSKIMVLVWAFFAVIFLASYTANLAAFM 662 (1258)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999998888888754
No 176
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=74.29 E-value=10 Score=32.92 Aligned_cols=54 Identities=19% Similarity=0.232 Sum_probs=39.4
Q ss_pred cccccccCCCeEEccCCc-cCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeec
Q 007326 410 LHEEFFLPGEVIMEKGNV-VDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 463 (608)
Q Consensus 410 ~~~~~~~~g~~I~~~g~~-~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 463 (608)
+....+.||...-..-.+ .+.+++|++|...+...+.+|++.....+++||.+=
T Consensus 32 ~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~ 86 (146)
T smart00835 32 AARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFV 86 (146)
T ss_pred EEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEE
Confidence 444567777775544332 568999999999998766556666778899999764
No 177
>KOG1052 consensus Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=70.01 E-value=20 Score=40.15 Aligned_cols=52 Identities=19% Similarity=0.284 Sum_probs=45.7
Q ss_pred HHHHHHhhhhcccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 007326 268 TSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK 320 (608)
Q Consensus 268 ~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~ 320 (608)
.++|+++.++..-| ++..|.+...+++..++.++++++.+...++++++++.
T Consensus 384 ~~~~~~~~~~~~q~-~~~~p~~~~~Rll~~~w~~~~lil~ssYTa~L~a~Lt~ 435 (656)
T KOG1052|consen 384 NCLWLTVGSLLQQG-SDEIPRSLSTRLLLGAWWLFVLILISSYTANLTAFLTV 435 (656)
T ss_pred cchhhhhHHHhccC-CCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 56788888888888 56999999999999999999999999999999998865
No 178
>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC. The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].
Probab=66.23 E-value=13 Score=34.29 Aligned_cols=52 Identities=25% Similarity=0.307 Sum_probs=44.2
Q ss_pred hhhcCCHHHHHHHHHcC-CCCCCC---CCCCChHhhHHHhcCcHHHHHHHHHcCCC
Q 007326 546 AAYHGDLYQLEGLIRAG-ADPNRT---DYDGRSPLHLAASRGYEEIMTFLIQKGVD 597 (608)
Q Consensus 546 aa~~g~~~~~~~Ll~~g-ad~~~~---d~~g~t~L~~a~~~~~~~~v~~Ll~~gad 597 (608)
.....+..++++++..| +++|.+ -+.|.|-|.-|...++.+.+.+|+++||-
T Consensus 224 S~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~ 279 (284)
T PF06128_consen 224 SEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI 279 (284)
T ss_pred hhcCCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence 34456677889999999 888875 46799999999999999999999999983
No 179
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=64.77 E-value=12 Score=27.98 Aligned_cols=29 Identities=21% Similarity=0.527 Sum_probs=23.3
Q ss_pred CeEEEEEeeEEEEEEeccCCcceeeEeeCCCCee
Q 007326 429 DQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 429 ~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
+++.+|++|.+.+.. ++|.. ..+++||.|
T Consensus 26 ~E~~~vleG~v~it~--~~G~~---~~~~aGD~~ 54 (74)
T PF05899_consen 26 DEFFYVLEGEVTITD--EDGET---VTFKAGDAF 54 (74)
T ss_dssp EEEEEEEEEEEEEEE--TTTEE---EEEETTEEE
T ss_pred CEEEEEEEeEEEEEE--CCCCE---EEEcCCcEE
Confidence 788899999999875 45643 788999976
No 180
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=64.62 E-value=2e+02 Score=30.73 Aligned_cols=50 Identities=14% Similarity=0.383 Sum_probs=32.5
Q ss_pred HhhCCHHHHHHHHHHHhHhh-----hcccccccCCCHHHHHHHHHHcccccccCC
Q 007326 369 LQDIPISIRAKISQTLYLPY-----IEKVPLFKGCSSEFINQIVIRLHEEFFLPG 418 (608)
Q Consensus 369 l~~lp~~l~~~i~~~~~~~~-----l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g 418 (608)
+.+.|+.|-+.++-++...+ +..-..+..++.+....++-++..+.|...
T Consensus 499 L~evPK~LsERVMDYvVSTWaMtkGiDTeKVL~~CPKDMkADICVHLNRKVFnEH 553 (971)
T KOG0501|consen 499 LYEVPKGLSERVMDYVVSTWAMTKGIDTEKVLGYCPKDMKADICVHLNRKVFNEH 553 (971)
T ss_pred HHhccHHHHHHHHHHHHHHhhhhcCcCHHHHhhhCccccccceeeecchhhhccC
Confidence 36899999888877764433 222344556677777777777776666543
No 181
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=63.78 E-value=28 Score=29.27 Aligned_cols=68 Identities=15% Similarity=0.090 Sum_probs=39.8
Q ss_pred cccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecchhhhcCCCcccEEEEeeceeeEEe
Q 007326 412 EEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRI 488 (608)
Q Consensus 412 ~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l 488 (608)
...++||...-..-.....+++|++|++.+... .+|+ ...+.+||.+--- .+.+ ..+++.++++++.+
T Consensus 39 ~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i-~~g~---~~~L~aGD~i~~~---~~~~--H~~~N~e~~~~l~v 106 (125)
T PRK13290 39 ETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDL-ATGE---VHPIRPGTMYALD---KHDR--HYLRAGEDMRLVCV 106 (125)
T ss_pred EEEECCCCcccceeCCCEEEEEEEeCEEEEEEc-CCCE---EEEeCCCeEEEEC---CCCc--EEEEcCCCEEEEEE
Confidence 346778865533222224699999999998621 1243 3788999976422 1233 34444477776655
No 182
>PHA01757 hypothetical protein
Probab=63.32 E-value=39 Score=25.19 Aligned_cols=46 Identities=15% Similarity=0.348 Sum_probs=33.5
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHH
Q 007326 289 NLREMVFIMIYVSFDMILGAYLIGNMTALIVKGSKTEKFRDKMTDL 334 (608)
Q Consensus 289 ~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~ 334 (608)
+..|-.+--|+...|.+...+++|.+.-+.....+.+.|.+-.+++
T Consensus 4 ~l~e~al~gf~a~~g~l~~~fii~e~~hlynek~~nenf~~AvD~m 49 (98)
T PHA01757 4 TLLEGALYGFFAVTGALSASFIIGEIVHLYNEKQRNENFAKAIDQM 49 (98)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHhHHHHHHHH
Confidence 4455566667788899999999999988876655666666666543
No 183
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=62.94 E-value=24 Score=30.95 Aligned_cols=63 Identities=13% Similarity=0.087 Sum_probs=41.7
Q ss_pred EccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecchhhhcCCCcccEEEEeeceeeEEechhh
Q 007326 422 MEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQS 492 (608)
Q Consensus 422 ~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~~~ 492 (608)
++..+ .+.+|++++|.+.+-..+ +|+ .....+++||+|=.- .+. +.+.++.++|.++.+.+..
T Consensus 43 ~H~~~-tdE~FyqleG~~~l~v~d-~g~-~~~v~L~eGd~flvP---~gv--pHsP~r~~~t~~LvIE~~r 105 (159)
T TIGR03037 43 FHDDP-GEEFFYQLKGEMYLKVTE-EGK-REDVPIREGDIFLLP---PHV--PHSPQRPAGSIGLVIERKR 105 (159)
T ss_pred cccCC-CceEEEEEcceEEEEEEc-CCc-EEEEEECCCCEEEeC---CCC--CcccccCCCcEEEEEEeCC
Confidence 55533 689999999999986543 233 235788999987322 122 3445556788888887654
No 184
>KOG3300 consensus NADH:ubiquinone oxidoreductase, B16.6 subunit/cell death-regulatory protein [Energy production and conversion; Cell cycle control, cell division, chromosome partitioning]
Probab=62.73 E-value=22 Score=29.38 Aligned_cols=43 Identities=16% Similarity=0.258 Sum_probs=29.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhcccc-HHHHHhhCCH
Q 007326 332 TDLMKYINRNRLGRDIRDQIIGHLRLQYESSYT-EASVLQDIPI 374 (608)
Q Consensus 332 ~~~~~~m~~~~l~~~l~~~v~~y~~~~~~~~~~-~~~~l~~lp~ 374 (608)
.++..|-.++-+-+-|+..-.+++-.++.+..+ |.+++++.|.
T Consensus 63 ~kiEd~~a~nai~PiL~AErDr~~l~~lrkn~eeEaeiMKdVPg 106 (146)
T KOG3300|consen 63 LKIEDYAARNAILPILQAERDRRFLSELRKNLEEEAEIMKDVPG 106 (146)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHccCCC
Confidence 345555566667777777777777777766655 6678888883
No 185
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=57.46 E-value=2.5e+02 Score=29.47 Aligned_cols=77 Identities=14% Similarity=0.266 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHhhccccHHHHHhhCCHHHHHHHHHH-----HhHhhhcccccccCCCHHHHHHHHHHcccccc------
Q 007326 347 IRDQIIGHLRLQYESSYTEASVLQDIPISIRAKISQT-----LYLPYIEKVPLFKGCSSEFINQIVIRLHEEFF------ 415 (608)
Q Consensus 347 l~~~v~~y~~~~~~~~~~~~~~l~~lp~~l~~~i~~~-----~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~------ 415 (608)
+.+-++.|++| ++.|..|+.++..- ............+.||+....+++...+..++
T Consensus 248 ~mDGiK~YM~~------------RkV~~~lq~rVikwfdYlwa~~~~~DEeevl~~LP~kL~aeIA~nvh~dTLkkV~iF 315 (536)
T KOG0500|consen 248 KMDGIKQYMRY------------RKVPKALQTRVIKWFDYLWAHKKIVDEEEVLKLLPDKLKAEIAINVHLDTLKKVRIF 315 (536)
T ss_pred HHHHHHHHHHH------------hcccHHHHHHHHHHHHHHHhccccccHHHHHHhCCHHHHhHhHHHHHHHHHHhhhHH
Confidence 34567888888 47788887775432 12234444556667787777777765544332
Q ss_pred -------------cCCCeEEccCCccCeEEEEEeeEEE
Q 007326 416 -------------LPGEVIMEKGNVVDQLYFVCLGKLE 440 (608)
Q Consensus 416 -------------~~g~~I~~~g~~~~~ly~I~~G~v~ 440 (608)
.-...+|.+|| |+..+|.+.
T Consensus 316 ~~ce~~lL~elVLklk~qvfSPgD-----yICrKGdvg 348 (536)
T KOG0500|consen 316 QDCEAGLLVELVLKLKPQVFSPGD-----YICRKGDVG 348 (536)
T ss_pred HhcchhHHHHHHHHhcceeeCCCC-----eEEecCccc
Confidence 23445666666 778888764
No 186
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=55.84 E-value=26 Score=28.54 Aligned_cols=42 Identities=24% Similarity=0.406 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHHHHHHhhc------------cccHHHHHhhCCHHHHHHHHHH
Q 007326 342 RLGRDIRDQIIGHLRLQYES------------SYTEASVLQDIPISIRAKISQT 383 (608)
Q Consensus 342 ~l~~~l~~~v~~y~~~~~~~------------~~~~~~~l~~lp~~l~~~i~~~ 383 (608)
-||.+||..|...+...-.. ..+...++..||+.||.+|...
T Consensus 52 ALP~diR~EVl~qe~~~~~~~~~~~~~~~~~~~~d~asflatl~p~LR~evL~~ 105 (108)
T PF14377_consen 52 ALPPDIREEVLAQERRERRRQERQQNARQHPQEMDNASFLATLPPELRREVLLD 105 (108)
T ss_pred hCCHHHHHHHHHHHHHHHHHhhhccccccCCCCCCHHHHHHhCCHHHHHHHhhc
Confidence 48999999999987654321 1235679999999999998654
No 187
>KOG1054 consensus Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=54.68 E-value=11 Score=39.70 Aligned_cols=53 Identities=17% Similarity=0.276 Sum_probs=46.8
Q ss_pred HHHHHHHHhhhhcccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007326 266 YITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIV 319 (608)
Q Consensus 266 Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~ 319 (608)
...|+||++..+..-| -||.|.+..+++...++-++.+++.+-..+++++.++
T Consensus 596 ifNsLWFsLgAFMQQG-~DI~PRslSGRIvggvWWFFTlIIiSSYTANLAAFLT 648 (897)
T KOG1054|consen 596 IFNSLWFSLGAFMQQG-CDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLT 648 (897)
T ss_pred hhHHHHHHHHHHHhcC-CCCCccccccceeccchhhhhhhhhhhhhhHHHHHHh
Confidence 3489999999999999 8999999999999999999998888877888887664
No 188
>PRK09108 type III secretion system protein HrcU; Validated
Probab=54.37 E-value=1.8e+02 Score=29.46 Aligned_cols=60 Identities=7% Similarity=0.077 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc-CchhHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 007326 294 VFIMIYVSFDMILGAYLIGNMTALIVK-GSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIG 353 (608)
Q Consensus 294 ~~~~~~~~~g~~~~a~~i~~i~~~~~~-~~~~~~~~~~~~~~~~~m~~~~l~~~l~~~v~~ 353 (608)
+...+..++..+..++++-.+..+..+ ....++.+=..+++++.+|+..=+++++.|+++
T Consensus 181 ~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMSkqEvK~E~K~~EGdP~iK~rrRq 241 (353)
T PRK09108 181 LWTVLMKLLAVAAGVFLLVGAADWKIQRWLFIRDNRMSKDEVKREHKESEGDPHIKGERKR 241 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 334444444444444444444444333 111122222235777888888888888888775
No 189
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=53.85 E-value=38 Score=30.22 Aligned_cols=69 Identities=13% Similarity=0.073 Sum_probs=43.8
Q ss_pred cCC-CeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecchhhhcCCCcccEEEEeeceeeEEechhh
Q 007326 416 LPG-EVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQS 492 (608)
Q Consensus 416 ~~g-~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~~~ 492 (608)
.|| ..-++- ++.+.+|++++|.+.+...+ +|+ .....+++||+|=.- .+.| ++.++.++|..+.+.+..
T Consensus 42 Gpn~r~d~H~-~~tdE~FyqleG~~~l~v~d-~g~-~~~v~L~eGd~fllP---~gvp--HsP~r~~~tv~LviE~~r 111 (177)
T PRK13264 42 GPNARTDFHY-DPGEEFFYQLEGDMYLKVQE-DGK-RRDVPIREGEMFLLP---PHVP--HSPQREAGSIGLVIERKR 111 (177)
T ss_pred cCCccccccc-CCCceEEEEECCeEEEEEEc-CCc-eeeEEECCCCEEEeC---CCCC--cCCccCCCeEEEEEEeCC
Confidence 445 233344 45689999999999887754 342 234678999987322 1333 344556778888886654
No 190
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=53.58 E-value=1.1e+02 Score=24.08 Aligned_cols=43 Identities=5% Similarity=0.159 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHc-C---chhHHHHHHHHHHHHHHHhCCCC
Q 007326 302 FDMILGAYLIGNMTALIVK-G---SKTEKFRDKMTDLMKYINRNRLG 344 (608)
Q Consensus 302 ~g~~~~a~~i~~i~~~~~~-~---~~~~~~~~~~~~~~~~m~~~~l~ 344 (608)
.=+.+++|.++.++--+.. + ...++-++++++.++.++++++.
T Consensus 44 ~Lv~fG~Ysl~~lgy~v~tFnDcpeA~~eL~~eI~eAK~dLr~kGv~ 90 (91)
T PF08285_consen 44 ALVSFGCYSLFTLGYGVATFNDCPEAAKELQKEIKEAKADLRKKGVD 90 (91)
T ss_pred HHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3345556777776654433 2 22456778888899999998864
No 191
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=50.64 E-value=38 Score=21.04 Aligned_cols=26 Identities=15% Similarity=0.391 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhCCCC-----HHHHHHHHHHH
Q 007326 330 KMTDLMKYINRNRLG-----RDIRDQIIGHL 355 (608)
Q Consensus 330 ~~~~~~~~m~~~~l~-----~~l~~~v~~y~ 355 (608)
+..+++++++++++| .+|.+|+.+|+
T Consensus 5 ~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 5 TVAELKEELKERGLSTSGKKAELIERLKEHL 35 (35)
T ss_dssp HHHHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 356788999999998 56888888874
No 192
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=49.81 E-value=2.4e+02 Score=28.61 Aligned_cols=24 Identities=8% Similarity=0.040 Sum_probs=18.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHH
Q 007326 331 MTDLMKYINRNRLGRDIRDQIIGH 354 (608)
Q Consensus 331 ~~~~~~~m~~~~l~~~l~~~v~~y 354 (608)
.+++++..|+..=+++++.|+++-
T Consensus 217 kqEvKdE~Ke~EGdP~iK~rrR~~ 240 (349)
T PRK12721 217 KDDVKQEYKDSEGDPEIKQKRREL 240 (349)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHH
Confidence 367788888888888888888753
No 193
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=48.30 E-value=3.3e+02 Score=28.61 Aligned_cols=25 Identities=16% Similarity=0.485 Sum_probs=21.3
Q ss_pred cCeehHHHHHHHHHHHHHHhhceee
Q 007326 103 KNLYVLDIVGQIAFLFDIVLQFCLA 127 (608)
Q Consensus 103 ~~~~~~~~~~~~if~~d~~l~f~t~ 127 (608)
..+.++|++..+-|.+++++....+
T Consensus 273 ~pLNIIDllAIlPFYielll~~~~~ 297 (477)
T KOG3713|consen 273 SPLNIIDLLAILPFYLELLLTLFGG 297 (477)
T ss_pred CcchHHHHHHHHHHHHHHHHHHhcc
Confidence 4578899999999999999986665
No 194
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=47.94 E-value=36 Score=28.71 Aligned_cols=50 Identities=20% Similarity=0.092 Sum_probs=38.4
Q ss_pred cccccccCCCeEEccCCc-cCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecch
Q 007326 410 LHEEFFLPGEVIMEKGNV-VDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV 465 (608)
Q Consensus 410 ~~~~~~~~g~~I~~~g~~-~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~ 465 (608)
+....+.||+.+-.--.+ .+...+|++|.+.+.. +|.. ..+.+||++-..
T Consensus 45 ~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~---~g~~---~~l~~Gd~i~ip 95 (131)
T COG1917 45 VVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQL---EGEK---KELKAGDVIIIP 95 (131)
T ss_pred EEEEEECCCcccccccCCCcceEEEEEecEEEEEe---cCCc---eEecCCCEEEEC
Confidence 445678888888777776 7789999999999876 3443 678999987544
No 195
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=47.74 E-value=41 Score=28.30 Aligned_cols=48 Identities=21% Similarity=0.290 Sum_probs=33.8
Q ss_pred HcccccccCCCeE-EccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCee
Q 007326 409 RLHEEFFLPGEVI-MEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 409 ~~~~~~~~~g~~I-~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
......+.||+-+ .+-....+..|+|++|...+.. +|++ ..+++||.+
T Consensus 37 ~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~---~~~~---~~v~~gd~~ 85 (127)
T COG0662 37 SIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTI---GGEE---VEVKAGDSV 85 (127)
T ss_pred EEEEEEECCCcccCcccccCcceEEEEEeeEEEEEE---CCEE---EEecCCCEE
Confidence 3455667777774 4444556899999999999886 3433 567888864
No 196
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=47.28 E-value=66 Score=29.33 Aligned_cols=51 Identities=16% Similarity=0.167 Sum_probs=34.9
Q ss_pred ccccccCCCeE---------EccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCee
Q 007326 411 HEEFFLPGEVI---------MEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 411 ~~~~~~~g~~I---------~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
-...+.||.+. +++.....++|++++|...+...+.+|. .....+.+|+.+
T Consensus 71 g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~-~~~~~v~pGd~v 130 (191)
T PRK04190 71 GTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGE-ARWIEMEPGTVV 130 (191)
T ss_pred EEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCc-EEEEEECCCCEE
Confidence 34456677753 4444445699999999999887555554 345788999875
No 197
>COG4792 EscU Type III secretory pathway, component EscU [Intracellular trafficking and secretion]
Probab=46.80 E-value=2.9e+02 Score=27.01 Aligned_cols=13 Identities=8% Similarity=-0.008 Sum_probs=7.4
Q ss_pred hhhcccccCCccc
Q 007326 275 VTMTTVGYGDVHA 287 (608)
Q Consensus 275 ~t~ttvGygdi~p 287 (608)
.-++++|-+-..|
T Consensus 166 ~~lp~CG~~C~~~ 178 (349)
T COG4792 166 LYLPGCGLYCALP 178 (349)
T ss_pred hhccccccchHHH
Confidence 4456666555544
No 198
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=46.34 E-value=2.9e+02 Score=28.10 Aligned_cols=22 Identities=5% Similarity=0.120 Sum_probs=16.9
Q ss_pred HHHHHHHHhCCCCHHHHHHHHH
Q 007326 332 TDLMKYINRNRLGRDIRDQIIG 353 (608)
Q Consensus 332 ~~~~~~m~~~~l~~~l~~~v~~ 353 (608)
+++++..|+..=+++++.|+++
T Consensus 225 qEVKdE~Ke~EGdP~iK~rrR~ 246 (359)
T PRK05702 225 QEVKDEHKQSEGDPEVKGRIRQ 246 (359)
T ss_pred HHHHHHHHhccCCHHHHHHHHH
Confidence 5777777888888888877775
No 199
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=46.14 E-value=3e+02 Score=27.84 Aligned_cols=23 Identities=4% Similarity=0.167 Sum_probs=18.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHH
Q 007326 331 MTDLMKYINRNRLGRDIRDQIIG 353 (608)
Q Consensus 331 ~~~~~~~m~~~~l~~~l~~~v~~ 353 (608)
.+++++.+|+..=+++++.|+++
T Consensus 217 kqEVKdE~K~~EGdP~iK~rrR~ 239 (347)
T TIGR00328 217 KQEVKDELKQSEGDPEVKGRIRQ 239 (347)
T ss_pred HHHHHHHHHhccCCHHHHHHHHH
Confidence 35788888888888888888775
No 200
>PRK08156 type III secretion system protein SpaS; Validated
Probab=45.54 E-value=3.2e+02 Score=27.86 Aligned_cols=23 Identities=4% Similarity=0.072 Sum_probs=17.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHH
Q 007326 332 TDLMKYINRNRLGRDIRDQIIGH 354 (608)
Q Consensus 332 ~~~~~~m~~~~l~~~l~~~v~~y 354 (608)
+++++..|+..=+++++.|+++-
T Consensus 213 qEvKdE~Ke~EGdP~iK~r~R~~ 235 (361)
T PRK08156 213 QEVKREYKEQEGNPEIKSKRREA 235 (361)
T ss_pred HHHHHHHHhccCCHHHHHHHHHH
Confidence 57778888888888888887753
No 201
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=44.47 E-value=3.2e+02 Score=28.12 Aligned_cols=23 Identities=9% Similarity=0.127 Sum_probs=18.1
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHH
Q 007326 331 MTDLMKYINRNRLGRDIRDQIIG 353 (608)
Q Consensus 331 ~~~~~~~m~~~~l~~~l~~~v~~ 353 (608)
.+++++.+|+..=+++++.|+++
T Consensus 224 kqEvKdE~K~~EGdP~iK~r~Rq 246 (386)
T PRK12468 224 KQDIRDEFKNQEGDPHVKGRIRQ 246 (386)
T ss_pred HHHHHHHHHhccCCHHHHHHHHH
Confidence 36788888888888888888875
No 202
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=43.57 E-value=3.5e+02 Score=27.56 Aligned_cols=23 Identities=0% Similarity=0.057 Sum_probs=17.9
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHH
Q 007326 331 MTDLMKYINRNRLGRDIRDQIIG 353 (608)
Q Consensus 331 ~~~~~~~m~~~~l~~~l~~~v~~ 353 (608)
.+++++.+|+..=+++++.|+++
T Consensus 226 kqEVKdE~Ke~EGdP~iK~r~Rq 248 (358)
T PRK13109 226 KQEIKDEHKQAEGDPSVKARLRS 248 (358)
T ss_pred HHHHHHHHHhccCCHHHHHHHHH
Confidence 36788888888888888888775
No 203
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=43.36 E-value=3.5e+02 Score=27.38 Aligned_cols=23 Identities=4% Similarity=0.052 Sum_probs=18.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHH
Q 007326 332 TDLMKYINRNRLGRDIRDQIIGH 354 (608)
Q Consensus 332 ~~~~~~m~~~~l~~~l~~~v~~y 354 (608)
+++++.+|+..=+++++.|+++-
T Consensus 217 qEvKdE~Ke~EGdP~iK~r~R~~ 239 (342)
T TIGR01404 217 DEVKREYKEQEGDPEIKSKRREL 239 (342)
T ss_pred HHHHHHHHhccCCHHHHHHHHHH
Confidence 57788888888888888887753
No 204
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=42.33 E-value=1.2e+02 Score=21.33 Aligned_cols=14 Identities=7% Similarity=0.451 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHH
Q 007326 326 KFRDKMTDLMKYIN 339 (608)
Q Consensus 326 ~~~~~~~~~~~~m~ 339 (608)
..++|++.+.+-+.
T Consensus 43 ~~eqKLDrIIeLLE 56 (58)
T PF13314_consen 43 SMEQKLDRIIELLE 56 (58)
T ss_pred HHHHHHHHHHHHHc
Confidence 56788887777654
No 205
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=41.19 E-value=99 Score=31.01 Aligned_cols=63 Identities=19% Similarity=0.210 Sum_probs=44.5
Q ss_pred ccccccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHH
Q 007326 528 ITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQ 593 (608)
Q Consensus 528 ~~~~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~ 593 (608)
.+.+++..+.--..|+-.|+..|+..+++.|+++||--.....+|. ..|+++... .+-+.|++
T Consensus 58 tgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~-RC~YgaLnd--~IR~mlls 120 (516)
T KOG0511|consen 58 TGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGD-RCHYGALND--RIRRMLLS 120 (516)
T ss_pred hCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcc-hhhhhhhhH--HHHHHHHH
Confidence 4556666677777889999999999999999999986655555665 456665442 33344444
No 206
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=40.68 E-value=83 Score=29.28 Aligned_cols=72 Identities=13% Similarity=0.152 Sum_probs=46.3
Q ss_pred cccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecchhhhcCCC---------cccEEEEe
Q 007326 410 LHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIP---------QPYTVQVC 480 (608)
Q Consensus 410 ~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~---------~~~~~~a~ 480 (608)
++...+.+|+..-..-...+...+++.|++.+.. .|. ....++. .++.|.+.| +..++.|.
T Consensus 31 F~~~~L~~Ges~~~~~~~~E~clV~v~Gk~~vs~---~g~--~f~~iG~-----R~SvFe~~p~~~vYvp~g~~~~vtA~ 100 (270)
T COG3718 31 FRLLRLAAGESATEETGDRERCLVLVTGKATVSA---HGS--TFGEIGT-----RMSVFERKPPDSVYVPAGSAFSVTAT 100 (270)
T ss_pred EEEEEccCCCcccccCCCceEEEEEEeeeEEEee---ccc--hHhhccc-----ccccccCCCCCeEEecCCceEEEEee
Confidence 4556788899887777777788889999998764 222 1112210 123444433 56789999
Q ss_pred eceeeEEechh
Q 007326 481 ELCRLLRIDKQ 491 (608)
Q Consensus 481 ~~~~l~~l~~~ 491 (608)
+++++.....-
T Consensus 101 t~~~vAvC~AP 111 (270)
T COG3718 101 TDLEVAVCSAP 111 (270)
T ss_pred cceEEEEEeCC
Confidence 99887766543
No 207
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=40.57 E-value=55 Score=32.49 Aligned_cols=16 Identities=13% Similarity=0.424 Sum_probs=10.4
Q ss_pred hccc-hhHHHhhccHHH
Q 007326 149 RSSF-IIDLFSCMPWDL 164 (608)
Q Consensus 149 ~~~f-~iDll~~lP~~~ 164 (608)
..+| ++..+|++-|-+
T Consensus 252 ~dPFFiVEt~CIiWFtf 268 (507)
T KOG1545|consen 252 TDPFFIVETLCIIWFTF 268 (507)
T ss_pred CCchHhHHHHHHHHHhH
Confidence 3444 888888876543
No 208
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=40.44 E-value=61 Score=33.12 Aligned_cols=51 Identities=16% Similarity=0.252 Sum_probs=35.1
Q ss_pred ccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCee
Q 007326 411 HEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 411 ~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
....+.||...-.--....++.++++|++.+...+.+|+. ....+++||++
T Consensus 70 ~~~~l~pG~~~~~HwH~~~E~~yVl~G~~~v~~~d~~g~~-~~~~L~~GD~~ 120 (367)
T TIGR03404 70 VNMRLEPGAIRELHWHKEAEWAYVLYGSCRITAVDENGRN-YIDDVGAGDLW 120 (367)
T ss_pred eEEEEcCCCCCCcccCCCceEEEEEeeEEEEEEEcCCCcE-EEeEECCCCEE
Confidence 3345677765432222346799999999999887655654 44589999976
No 209
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=40.24 E-value=1.5e+02 Score=24.96 Aligned_cols=42 Identities=12% Similarity=0.327 Sum_probs=20.5
Q ss_pred HHHHHHHHHHc-C-chhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 007326 310 LIGNMTALIVK-G-SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRL 357 (608)
Q Consensus 310 ~i~~i~~~~~~-~-~~~~~~~~~~~~~~~~m~~~~l~~~l~~~v~~y~~~ 357 (608)
+||.++..+.+ . .+..+.++++++.++-+.. -|+.|.+||..
T Consensus 11 iiG~~~~r~~~~~~~~q~~l~~eL~~~k~el~~------yk~~V~~HF~~ 54 (128)
T PF06295_consen 11 IIGFLIGRLTSSNQQKQAKLEQELEQAKQELEQ------YKQEVNDHFAQ 54 (128)
T ss_pred HHHHHHHHHhccchhhHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Confidence 34444444443 2 2233445556655555543 34666666644
No 210
>KOG2378 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=40.06 E-value=27 Score=35.63 Aligned_cols=45 Identities=27% Similarity=0.567 Sum_probs=38.3
Q ss_pred CCCeecchhhhcCCCcccEEEEee-ceeeEEechhhHHHHHHHhhh
Q 007326 458 PNSSFGEVSILCNIPQPYTVQVCE-LCRLLRIDKQSFTNIIDIYFC 502 (608)
Q Consensus 458 ~G~~fGe~~~~~~~~~~~~~~a~~-~~~l~~l~~~~~~~l~~~~~~ 502 (608)
+||-||..++....|+.+++...+ +|..+++++.+|..++++..+
T Consensus 1 eGddfgklalvnd~praativl~ed~~~fl~vDk~~Fn~I~~~vEa 46 (573)
T KOG2378|consen 1 EGDDFGKLALVNDAPRAATIVLREDNCHFLRVDKHDFNRILHDVEA 46 (573)
T ss_pred CCcccchhccccccccccceeeecCCCcceeecHHHHHHHHHhhhh
Confidence 489999999999999988876654 599999999999999987543
No 211
>COG1422 Predicted membrane protein [Function unknown]
Probab=39.48 E-value=89 Score=28.41 Aligned_cols=39 Identities=15% Similarity=0.344 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHc----CchhHHHHHHHHHHHHHHHhCC
Q 007326 304 MILGAYLIGNMTALIVK----GSKTEKFRDKMTDLMKYINRNR 342 (608)
Q Consensus 304 ~~~~a~~i~~i~~~~~~----~~~~~~~~~~~~~~~~~m~~~~ 342 (608)
+++.|.++|.+.+++.. ..+-+++|+++++.++.+++.+
T Consensus 50 ilV~avi~gl~~~i~~~~liD~ekm~~~qk~m~efq~e~~eA~ 92 (201)
T COG1422 50 ILVAAVITGLYITILQKLLIDQEKMKELQKMMKEFQKEFREAQ 92 (201)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555544 2334677788887777776543
No 212
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=38.95 E-value=45 Score=28.75 Aligned_cols=53 Identities=17% Similarity=0.260 Sum_probs=36.2
Q ss_pred ccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCc----ceeeE--eeCCCCeec
Q 007326 411 HEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGT----EDYVS--YLHPNSSFG 463 (608)
Q Consensus 411 ~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~----~~~~~--~l~~G~~fG 463 (608)
....+.||....-.-..+..+.+|++|+..+....+++. ..... .+++||+|-
T Consensus 37 ~~~~i~pg~~~~Ph~h~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v~l~~Gdv~~ 95 (144)
T PF00190_consen 37 RRVLIEPGGLRAPHYHNADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKVRLKAGDVFV 95 (144)
T ss_dssp EEEEEETTEEEEEEEESSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEEEEETTEEEE
T ss_pred EeeehhcCCccceeEeeeeEEeeeeccceEEEEEecCCccccceeeeceeeeeccccee
Confidence 344457777765554577899999999999776666541 12223 499999874
No 213
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=38.15 E-value=53 Score=28.48 Aligned_cols=39 Identities=21% Similarity=0.254 Sum_probs=29.2
Q ss_pred EEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecch
Q 007326 421 IMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV 465 (608)
Q Consensus 421 I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~ 465 (608)
..+.....+++++|++|...+.. +|.+ ..++|||+.|-.
T Consensus 57 ~~H~Hs~edEfv~ILeGE~~l~~---d~~e---~~lrpGD~~gFp 95 (161)
T COG3837 57 LRHWHSAEDEFVYILEGEGTLRE---DGGE---TRLRPGDSAGFP 95 (161)
T ss_pred cccccccCceEEEEEcCceEEEE---CCee---EEecCCceeecc
Confidence 44555567799999999998775 4443 678999988754
No 214
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=35.58 E-value=81 Score=32.23 Aligned_cols=52 Identities=10% Similarity=-0.020 Sum_probs=36.3
Q ss_pred cccccccCCCeEEccC-CccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCee
Q 007326 410 LHEEFFLPGEVIMEKG-NVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 410 ~~~~~~~~g~~I~~~g-~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
+....+.||...-.-= ...+++++|++|++++...+.+|+. ....+++||++
T Consensus 247 ~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~~-~~~~l~~GD~~ 299 (367)
T TIGR03404 247 AAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAAGGNA-RTFDYQAGDVG 299 (367)
T ss_pred EEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEecCCcE-EEEEECCCCEE
Confidence 4556677777653332 3367899999999999876666654 33569999965
No 215
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []. These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.
Probab=33.21 E-value=49 Score=30.85 Aligned_cols=58 Identities=17% Similarity=0.323 Sum_probs=38.3
Q ss_pred hCCHHHHHHHHHHHhHhhhccccccc-CCCHHHHHHHHHHccccc--ccCCCeEEccCCccC
Q 007326 371 DIPISIRAKISQTLYLPYIEKVPLFK-GCSSEFINQIVIRLHEEF--FLPGEVIMEKGNVVD 429 (608)
Q Consensus 371 ~lp~~l~~~i~~~~~~~~l~~~~~f~-~l~~~~l~~l~~~~~~~~--~~~g~~I~~~g~~~~ 429 (608)
.+|.+ ...+...+...++.-.-.|. ..++...++......+.. +.+|+.|+++|+..+
T Consensus 147 ~~~~~-~~~~~~~l~~~~i~PNl~~d~~~T~~~~~~a~~~V~pv~~~V~~Ge~IV~kGe~VT 207 (222)
T PF07697_consen 147 NLPSE-LRELLKELLSNFIRPNLIYDEEATEKAREEALASVSPVRGMVKKGEVIVRKGEIVT 207 (222)
T ss_pred CCCHH-HHHHHHHHHHhcCCchhhcCHHHHHHHHHHHHhcCCchHhhccCCCEEecCCcEeC
Confidence 44544 33333444444444444454 466777777888888888 999999999999654
No 216
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional
Probab=33.14 E-value=4.8e+02 Score=28.84 Aligned_cols=24 Identities=8% Similarity=0.134 Sum_probs=19.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHH
Q 007326 331 MTDLMKYINRNRLGRDIRDQIIGH 354 (608)
Q Consensus 331 ~~~~~~~m~~~~l~~~l~~~v~~y 354 (608)
.+++++.+|+..=+++++.|+|+-
T Consensus 480 kqEvK~E~Ke~EGdP~iK~r~R~~ 503 (609)
T PRK12772 480 KQEVKEEYKQDEGDPQIKAKIKQK 503 (609)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHH
Confidence 367888888888888888888753
No 217
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=32.60 E-value=1.8e+02 Score=29.73 Aligned_cols=57 Identities=16% Similarity=0.289 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhhhhcccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007326 263 WKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIV 319 (608)
Q Consensus 263 ~~~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~ 319 (608)
.--|+-++-|++..+.+++-++........-.+++++.+++++.+.+.+.+++..++
T Consensus 98 Lg~Figtfvy~l~~l~~i~~~~~~~~p~~~~~~a~~l~i~~v~~li~fI~~i~~~iq 154 (371)
T PF10011_consen 98 LGTFIGTFVYSLLVLIAIRSGDYGSVPRLSVFIALALAILSVVLLIYFIHHIARSIQ 154 (371)
T ss_pred HHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 446888888888888888855542333334667777777888888888888777653
No 218
>PRK06298 type III secretion system protein; Validated
Probab=32.43 E-value=5.5e+02 Score=26.11 Aligned_cols=23 Identities=4% Similarity=0.005 Sum_probs=17.9
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHH
Q 007326 332 TDLMKYINRNRLGRDIRDQIIGH 354 (608)
Q Consensus 332 ~~~~~~m~~~~l~~~l~~~v~~y 354 (608)
+++++.+|+..=+++++.|+++-
T Consensus 219 qEvKdE~K~~EGdP~iK~rrR~~ 241 (356)
T PRK06298 219 FEVKQEFKDTEGNPEIKGRRRQI 241 (356)
T ss_pred HHHHHHHHhccCCHHHHHHHHHH
Confidence 57888888888888888887753
No 219
>PF08475 Baculo_VP91_N: Viral capsid protein 91 N-terminal; InterPro: IPR013682 This domain is found in Baculoviridae including the nucleopolyhedrovirus at the N terminus of the viral capsid protein 91 (VP91) [].
Probab=31.97 E-value=79 Score=28.36 Aligned_cols=25 Identities=20% Similarity=0.488 Sum_probs=20.0
Q ss_pred HHcCchhHHHHHHHHHHHHHHHhCC
Q 007326 318 IVKGSKTEKFRDKMTDLMKYINRNR 342 (608)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~m~~~~ 342 (608)
+.....++.|.++++-+.+||++.+
T Consensus 19 I~~dFde~~F~~rL~Vl~EYlkrtn 43 (183)
T PF08475_consen 19 IYNDFDENEFDNRLQVLTEYLKRTN 43 (183)
T ss_pred hccccchHHHHHHHHHHHHHHHhcC
Confidence 3445567899999999999999854
No 220
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=30.67 E-value=21 Score=40.40 Aligned_cols=71 Identities=21% Similarity=0.152 Sum_probs=51.7
Q ss_pred hhhhhhhhhhhhcCCHHHHHHHHHc-CCCCCCCCCCCChHhhHHHhcCcHHHHHHHH-HcCCCCCccCCCCCCC
Q 007326 537 AELALKVNSAAYHGDLYQLEGLIRA-GADPNRTDYDGRSPLHLAASRGYEEIMTFLI-QKGVDINLKGNSIMQM 608 (608)
Q Consensus 537 ~~~~~~l~~aa~~g~~~~~~~Ll~~-gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll-~~gad~~~~~~~g~t~ 608 (608)
....+-+|.++..+..-.++.+++. |...+..|.+|.-.+|.++ .++.+++-+|. -+|..++.+|.+|||+
T Consensus 572 ~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca-~lg~ewA~ll~~~~~~ai~i~D~~G~tp 644 (975)
T KOG0520|consen 572 FRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCA-ALGYEWAFLPISADGVAIDIRDRNGWTP 644 (975)
T ss_pred CcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhh-hcCCceeEEEEeecccccccccCCCCcc
Confidence 3344557778888888888888875 6666677777777777744 55566666554 5699999999999985
No 221
>PF07077 DUF1345: Protein of unknown function (DUF1345); InterPro: IPR009781 This family consists of several hypothetical bacterial proteins of around 230 residues in length. The function of this family is unknown.
Probab=30.33 E-value=3.7e+02 Score=24.25 Aligned_cols=48 Identities=15% Similarity=0.247 Sum_probs=39.6
Q ss_pred HHHHHHHHHhhhhcccccCCcccCChhhHHHHHHHHHHHHHHHHHHHH
Q 007326 265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIG 312 (608)
Q Consensus 265 ~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~ 312 (608)
.|.+-+|++++.-+|-.-.|+.+.+..=|-.+..=.+++.++++.+++
T Consensus 132 ~y~DFlYfsftiG~t~q~SDv~v~s~~~Rr~vl~hsllSF~Fnt~ilA 179 (180)
T PF07077_consen 132 DYWDFLYFSFTIGMTFQTSDVNVTSRRMRRLVLLHSLLSFFFNTVILA 179 (180)
T ss_pred CchhhhHHHHHHHhhccccCCCcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578999999999999999999999888787777777777777776654
No 222
>PF06212 GRIM-19: GRIM-19 protein; InterPro: IPR009346 This family consists of several eukaryotic gene associated with retinoic-interferon-induced mortality 19 (GRIM-19) proteins. GRIM-19, was reported to encode a small protein primarily distributed in the nucleus and was able to promote cell death induced by IFN-beta and RA. A bovine homologue of GRIM-19 was co-purified with mitochondrial NADH:ubiquinone oxidoreductase (complex I) in bovine heart. Therefore, its exact cellular localisation and function are unclear. It has now been discovered that GRIM-19 is a specific interacting protein which negatively regulates Stat3 activity [].
Probab=30.11 E-value=2.6e+02 Score=23.68 Aligned_cols=31 Identities=23% Similarity=0.186 Sum_probs=16.9
Q ss_pred CCHHHHHHHHHHHHHHhhccccHHHHHhhCC
Q 007326 343 LGRDIRDQIIGHLRLQYESSYTEASVLQDIP 373 (608)
Q Consensus 343 l~~~l~~~v~~y~~~~~~~~~~~~~~l~~lp 373 (608)
+|--+-++=+.|++....+...|.+++++.|
T Consensus 71 ~PlLqAE~DR~~lr~~~~~~~~E~~lMkdVp 101 (130)
T PF06212_consen 71 LPLLQAEEDRRYLRRLKANREEEAELMKDVP 101 (130)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3443444445555444444455777888776
No 223
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=29.28 E-value=1.5e+02 Score=24.13 Aligned_cols=46 Identities=20% Similarity=0.312 Sum_probs=30.5
Q ss_pred CCCHHHHHHHHHHHHHHhh-c--------c----c--cHHHHHhhCCHHHHHHHHHHHhHh
Q 007326 342 RLGRDIRDQIIGHLRLQYE-S--------S----Y--TEASVLQDIPISIRAKISQTLYLP 387 (608)
Q Consensus 342 ~l~~~l~~~v~~y~~~~~~-~--------~----~--~~~~~l~~lp~~l~~~i~~~~~~~ 387 (608)
-||.++|.+|..-....-. + . . -..++|..||+++|.++.......
T Consensus 8 aLPeDiR~Evl~~~~~~~~~~~~~~~~~~~~~~~~~~I~pefL~ALP~diR~EVl~qe~~~ 68 (108)
T PF14377_consen 8 ALPEDIREEVLAQQQRERRAQASQRQSPQSSAPQPSQIDPEFLAALPPDIREEVLAQERRE 68 (108)
T ss_pred HCCHHHHHHHHHHHHhhccchhcccCcccccCCCccccCHHHHHhCCHHHHHHHHHHHHHH
Confidence 4889999998655433211 0 0 0 046899999999999987665443
No 224
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=27.62 E-value=85 Score=24.44 Aligned_cols=63 Identities=14% Similarity=0.082 Sum_probs=40.0
Q ss_pred cccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecchhhhcCCCcccEEEEeeceeeEE
Q 007326 410 LHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLR 487 (608)
Q Consensus 410 ~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~ 487 (608)
.....+.||..+-.....+....||++|.... .+ ..+.+|++.=. ..-...+..+.+.|.++.
T Consensus 26 ~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~d----~~------~~~~~G~~~~~-----p~g~~h~~~s~~gc~~~v 88 (91)
T PF12973_consen 26 VSLLRLEPGASLPRHRHPGGEEILVLEGELSD----GD------GRYGAGDWLRL-----PPGSSHTPRSDEGCLILV 88 (91)
T ss_dssp EEEEEE-TTEEEEEEEESS-EEEEEEECEEEE----TT------CEEETTEEEEE------TTEEEEEEESSCEEEEE
T ss_pred EEEEEECCCCCcCccCCCCcEEEEEEEEEEEE----CC------ccCCCCeEEEe-----CCCCccccCcCCCEEEEE
Confidence 44566788888777666677788999999862 22 23578876522 223446777888888775
No 225
>PRK11171 hypothetical protein; Provisional
Probab=27.45 E-value=1.7e+02 Score=28.41 Aligned_cols=69 Identities=14% Similarity=-0.025 Sum_probs=40.5
Q ss_pred ccccccCCCeEEccCC--ccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecchhhhcCCCcccEEEEeeceeeEEe
Q 007326 411 HEEFFLPGEVIMEKGN--VVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRI 488 (608)
Q Consensus 411 ~~~~~~~g~~I~~~g~--~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l 488 (608)
....+.||...-.... ..+.+++|++|.+.+.. +|+ ...+.+||.+=-- .+.++.......+.++++.+
T Consensus 64 ~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~---~g~---~~~L~~GDsi~~p---~~~~H~~~N~g~~~a~~l~v 134 (266)
T PRK11171 64 YLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLTL---EGK---THALSEGGYAYLP---PGSDWTLRNAGAEDARFHWI 134 (266)
T ss_pred EEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEEE---CCE---EEEECCCCEEEEC---CCCCEEEEECCCCCEEEEEE
Confidence 3455677765433332 23689999999999875 444 3688999975211 23344333333445665555
No 226
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=27.17 E-value=3.9e+02 Score=27.16 Aligned_cols=51 Identities=12% Similarity=0.186 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhccccHHHHHhhCCHHHHHHHHHH
Q 007326 330 KMTDLMKYINRNRLGRDIRDQIIGHLRLQYESSYTEASVLQDIPISIRAKISQT 383 (608)
Q Consensus 330 ~~~~~~~~m~~~~l~~~l~~~v~~y~~~~~~~~~~~~~~l~~lp~~l~~~i~~~ 383 (608)
...++.+++...+.|+-=-+||.++ .|+++...-+-+.+||..+|+.+...
T Consensus 13 ~~~~l~~~~~~~g~~~~r~~qi~~~---~~~~~~~~~~~m~~l~~~~r~~l~~~ 63 (355)
T TIGR00048 13 TLQELRQWLKDLGEKPFRAKQIYKW---LYHKGKDSFDDMTNLSKDLREKLNRV 63 (355)
T ss_pred CHHHHHHHHHHcCCCchhHHHHHHH---HHHcCCCCHHHccccCHHHHHHHhhc
Confidence 3456788888888888666666544 56666655566788999999877544
No 227
>PRK11171 hypothetical protein; Provisional
Probab=27.09 E-value=1.3e+02 Score=29.25 Aligned_cols=48 Identities=19% Similarity=0.080 Sum_probs=36.7
Q ss_pred HcccccccCCCeEEcc-CCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCee
Q 007326 409 RLHEEFFLPGEVIMEK-GNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 409 ~~~~~~~~~g~~I~~~-g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
.+....++||..+-.. .....+.++|++|+..+.. +|++ ..+.+||++
T Consensus 185 ~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~---~~~~---~~l~~GD~i 233 (266)
T PRK11171 185 HVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRL---NNDW---VEVEAGDFI 233 (266)
T ss_pred EEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEE---CCEE---EEeCCCCEE
Confidence 4556789999888763 5566689999999999865 4543 678999975
No 228
>COG5559 Uncharacterized conserved small protein [Function unknown]
Probab=26.32 E-value=68 Score=22.45 Aligned_cols=23 Identities=13% Similarity=0.365 Sum_probs=19.6
Q ss_pred hCCCCHHHHHHHHHHHHHHhhcc
Q 007326 340 RNRLGRDIRDQIIGHLRLQYESS 362 (608)
Q Consensus 340 ~~~l~~~l~~~v~~y~~~~~~~~ 362 (608)
..++|++|+..|.+|.+|..++.
T Consensus 8 fqkLPDdLKrEvldY~EfLlek~ 30 (65)
T COG5559 8 FQKLPDDLKREVLDYIEFLLEKK 30 (65)
T ss_pred HHHCcHHHHHHHHHHHHHHHHHH
Confidence 35799999999999999987654
No 229
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=26.10 E-value=4.7e+02 Score=26.36 Aligned_cols=48 Identities=8% Similarity=0.059 Sum_probs=34.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhccccHHHHHhhCCHHHHHHHHHH
Q 007326 332 TDLMKYINRNRLGRDIRDQIIGHLRLQYESSYTEASVLQDIPISIRAKISQT 383 (608)
Q Consensus 332 ~~~~~~m~~~~l~~~l~~~v~~y~~~~~~~~~~~~~~l~~lp~~l~~~i~~~ 383 (608)
.++.+++...+.|+-=-+||.+ ..|+++.. -+-+.+||..+|+++...
T Consensus 7 ~~~~~~~~~~g~~~~r~~qi~~---~~~~~~~~-~~~m~~l~~~~r~~l~~~ 54 (336)
T PRK14470 7 QDSRALARPAGISLEDARRITG---AVIGRGAP-LRSARNVRRSVLDEVDAL 54 (336)
T ss_pred HHHHHHHHHcCCCcHHHHHHHH---HHHhCCCC-HHHhccCCHHHHHHHhcc
Confidence 4577788888888755555544 45677766 777889999999887554
No 230
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=25.94 E-value=1.5e+02 Score=27.34 Aligned_cols=36 Identities=14% Similarity=0.176 Sum_probs=27.8
Q ss_pred CccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCee
Q 007326 426 NVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 426 ~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
....++|++++|+......+.+|+ ..+...++||..
T Consensus 101 ade~E~y~vi~G~g~m~v~~~~G~-~~v~~~~~Gd~i 136 (209)
T COG2140 101 ADEPEIYYVLKGEGRMLVQKPEGE-ARVIAVRAGDVI 136 (209)
T ss_pred CCcccEEEEEeccEEEEEEcCCCc-EEEEEecCCcEE
Confidence 333459999999999998888876 466778888853
No 231
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=25.11 E-value=1.2e+02 Score=18.73 Aligned_cols=24 Identities=13% Similarity=0.408 Sum_probs=17.8
Q ss_pred HHHHHHHHHhCCCC-----HHHHHHHHHH
Q 007326 331 MTDLMKYINRNRLG-----RDIRDQIIGH 354 (608)
Q Consensus 331 ~~~~~~~m~~~~l~-----~~l~~~v~~y 354 (608)
..+++++++..++| ..|++|+.+|
T Consensus 6 ~~~Lk~~l~~~gl~~~G~K~~Lv~Rl~~~ 34 (35)
T smart00513 6 VSELKDELKKRGLSTSGTKAELVDRLLEA 34 (35)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHh
Confidence 35678888888887 4577887776
No 232
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=24.87 E-value=5.6e+02 Score=26.39 Aligned_cols=46 Identities=7% Similarity=0.101 Sum_probs=29.1
Q ss_pred HHHHHHHHHhhhhcccccCCccc------CChhhHHHHHHHHHHHHHHHHHH
Q 007326 265 SYITSMYASVVTMTTVGYGDVHA------VNLREMVFIMIYVSFDMILGAYL 310 (608)
Q Consensus 265 ~Y~~s~y~~~~t~ttvGygdi~p------~~~~e~~~~~~~~~~g~~~~a~~ 310 (608)
...+|++-++++++|-|+.-... .++.-.++.++.|++|-+-|+..
T Consensus 128 ~~~~Aif~avSa~~taGFs~~~~~~~~~~~~~~i~~v~~~lm~iGg~gF~v~ 179 (390)
T TIGR00933 128 PLFDAIFHSISAFNNGGFSTHSDSSIGYFHDPSVNLVIAFLIILGGLGFTVH 179 (390)
T ss_pred HHHHHHHHHHHHHhcCCcCCCCCcchhhccChHHHHHHHHHHHHHhcCHHHH
Confidence 45699999999999999665432 12223445555566665555443
No 233
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=24.45 E-value=1.8e+02 Score=26.21 Aligned_cols=53 Identities=19% Similarity=0.289 Sum_probs=31.9
Q ss_pred ccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecchhhhcCCCcccEEEEeeceeeEEe
Q 007326 427 VVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRI 488 (608)
Q Consensus 427 ~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l 488 (608)
....+.+|++|.+.+.. +|+ ...+.+||.+=-- .+.++.......++++++.+
T Consensus 127 ~~~E~~~Vl~G~~~~~~---~~~---~~~l~~Gd~~~~~---~~~~H~~~n~~~~~~~~l~~ 179 (185)
T PRK09943 127 QGEEIGTVLEGEIVLTI---NGQ---DYHLVAGQSYAIN---TGIPHSFSNTSAGICRIISA 179 (185)
T ss_pred CCcEEEEEEEeEEEEEE---CCE---EEEecCCCEEEEc---CCCCeeeeCCCCCCeEEEEE
Confidence 34689999999999875 443 3678999975221 23444333333344555443
No 234
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=23.95 E-value=5e+02 Score=23.16 Aligned_cols=55 Identities=11% Similarity=0.197 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-HHHHc---CchhHHHHHHHHHHHHHHHhCCCCH
Q 007326 291 REMVFIMIYVSFDMILGAYLIGNMT-ALIVK---GSKTEKFRDKMTDLMKYINRNRLGR 345 (608)
Q Consensus 291 ~e~~~~~~~~~~g~~~~a~~i~~i~-~~~~~---~~~~~~~~~~~~~~~~~m~~~~l~~ 345 (608)
.+-++++..+.+++...++++|-+. +.+-+ .....++..|-+++-+-++++++++
T Consensus 74 lDP~~~~g~~t~a~g~lG~L~GP~~G~~vf~l~~r~~~~~~~~Ke~eF~~rIkknRvDp 132 (173)
T PF08566_consen 74 LDPFMVYGLATLACGALGWLVGPSLGNQVFRLLNRKYLKQMDAKEKEFLARIKKNRVDP 132 (173)
T ss_pred cCHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 4556666666666666666665542 22222 2234556666666666677777655
No 235
>smart00511 ORANGE Orange domain. This domain confers specificity among members of the Hairy/E(SPL) family.
Probab=23.81 E-value=2.2e+02 Score=18.68 Aligned_cols=36 Identities=14% Similarity=0.470 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhh
Q 007326 325 EKFRDKMTDLMKYINRN-RLGRDIRDQIIGHLRLQYE 360 (608)
Q Consensus 325 ~~~~~~~~~~~~~m~~~-~l~~~l~~~v~~y~~~~~~ 360 (608)
.-|.+=+.++.+||... .++..++.++.+|++...+
T Consensus 5 ~Gy~~C~~Ev~~fLs~~~~~~~~~~~~Ll~HL~~~~~ 41 (45)
T smart00511 5 SGYRECANEVSRFLSQLPGTDPDVRARLLSHLQTHLN 41 (45)
T ss_pred HHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHH
Confidence 46788899999999965 5789999999999876554
No 236
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=23.45 E-value=4.8e+02 Score=26.65 Aligned_cols=51 Identities=12% Similarity=0.231 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhccccHHHHHhhCCHHHHHHHHHH
Q 007326 330 KMTDLMKYINRNRLGRDIRDQIIGHLRLQYESSYTEASVLQDIPISIRAKISQT 383 (608)
Q Consensus 330 ~~~~~~~~m~~~~l~~~l~~~v~~y~~~~~~~~~~~~~~l~~lp~~l~~~i~~~ 383 (608)
...++.+++...+.|+-=-+||.+ ..|+++..+-+-+.+||+.+|+.+...
T Consensus 14 ~~~el~~~~~~~g~~~fRa~Qi~~---wiy~~~~~~~~~mtnlpk~lR~~L~~~ 64 (371)
T PRK14461 14 NLAELTELLTAWGQPAFRARQLYR---HLYVNLADSVLAMTDLPLALRERLTAE 64 (371)
T ss_pred CHHHHHHHHHHcCCCchHHHHHHH---HHHHcCCCCHHHccccCHHHHHHHhhc
Confidence 345678888888888865555544 456777777777899999999887554
No 237
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=22.65 E-value=6.3e+02 Score=25.92 Aligned_cols=50 Identities=12% Similarity=0.207 Sum_probs=36.8
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhccccHHHHHhhCCHHHHHHHHHH
Q 007326 331 MTDLMKYINRNRLGRDIRDQIIGHLRLQYESSYTEASVLQDIPISIRAKISQT 383 (608)
Q Consensus 331 ~~~~~~~m~~~~l~~~l~~~v~~y~~~~~~~~~~~~~~l~~lp~~l~~~i~~~ 383 (608)
..++.+++...+.|+-=-+||.++ .|+++..+-+-+.+||..+|+++..+
T Consensus 29 ~~el~~~~~~~g~~~~ra~Qi~~w---iy~~~~~~~~~mt~l~k~~r~~L~~~ 78 (373)
T PRK14459 29 PAERREAVAELGLPAFRAKQLARH---YFGRLTADPAQMTDLPAAAREELAEA 78 (373)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHH---HHhcCCCCHHHhcccCHHHHHHHHhh
Confidence 356778888888888666666544 56666666777889999999887655
No 238
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=22.41 E-value=1.4e+02 Score=28.83 Aligned_cols=49 Identities=16% Similarity=0.096 Sum_probs=36.8
Q ss_pred HHcccccccCCCeEE-ccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCee
Q 007326 408 IRLHEEFFLPGEVIM-EKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 408 ~~~~~~~~~~g~~I~-~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
..+....++||..+- ++-....+.++|++|+..+.. +|+. ..+++||++
T Consensus 179 ~~~~~~~~~PG~~~~~~~~H~~eh~~yiL~G~G~~~~---~g~~---~~V~~GD~i 228 (260)
T TIGR03214 179 MNVHILSFEPGASHPYIETHVMEHGLYVLEGKGVYNL---DNNW---VPVEAGDYI 228 (260)
T ss_pred cEEEEEEECCCcccCCcccccceeEEEEEeceEEEEE---CCEE---EEecCCCEE
Confidence 356668899999995 455556788999999988754 5543 678899975
No 239
>PHA02909 hypothetical protein; Provisional
Probab=21.55 E-value=1.1e+02 Score=21.13 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=15.2
Q ss_pred hhcccccCCcccCChhhHHHHHHH
Q 007326 276 TMTTVGYGDVHAVNLREMVFIMIY 299 (608)
Q Consensus 276 t~ttvGygdi~p~~~~e~~~~~~~ 299 (608)
.|.+|.||+-.-.-..|..|++++
T Consensus 13 lmlsvdygngkkvyytentfcimv 36 (72)
T PHA02909 13 LMLSVDYGNGKKVYYTENTFCIMV 36 (72)
T ss_pred EEEEEecCCCeEEEEeccchhHHH
Confidence 366788888665555565555543
No 240
>PF12983 DUF3867: Protein of unknown function (DUF3867); InterPro: IPR024218 This entry represents a family of functionally uncharacterised proteins that are found in bacteria. Proteins in this family are approximately 190 amino acids in length.
Probab=21.44 E-value=4.2e+02 Score=23.51 Aligned_cols=16 Identities=38% Similarity=0.686 Sum_probs=13.6
Q ss_pred ccchHHHHHHHHHHHh
Q 007326 259 EIGFWKSYITSMYASV 274 (608)
Q Consensus 259 ~~~~~~~Y~~s~y~~~ 274 (608)
+.+-++.|+.++|+.+
T Consensus 17 DiDKFE~YiY~ly~~~ 32 (186)
T PF12983_consen 17 DIDKFEEYIYSLYYDV 32 (186)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 4577899999999887
No 241
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=21.39 E-value=1.5e+02 Score=25.93 Aligned_cols=50 Identities=18% Similarity=0.279 Sum_probs=30.0
Q ss_pred cCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecchhhhcCCCcccEEEEeeceeeEEe
Q 007326 428 VDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRI 488 (608)
Q Consensus 428 ~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l 488 (608)
-+++.+|++|.+.+.. +|+. ...++||++ ++ ..-...+..+-..++.+.+
T Consensus 95 YDEi~~VlEG~L~i~~---~G~~---~~A~~GDvi----~i-PkGs~I~fst~~~a~~~Yv 144 (152)
T PF06249_consen 95 YDEIKYVLEGTLEISI---DGQT---VTAKPGDVI----FI-PKGSTITFSTPDYARFFYV 144 (152)
T ss_dssp SEEEEEEEEEEEEEEE---TTEE---EEEETT-EE----EE--TT-EEEEEEEEEEEEEEE
T ss_pred cceEEEEEEeEEEEEE---CCEE---EEEcCCcEE----EE-CCCCEEEEecCCCEEEEEE
Confidence 3689999999998874 5653 567889875 22 2223344455555665554
No 242
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=21.31 E-value=5.4e+02 Score=22.24 Aligned_cols=43 Identities=9% Similarity=0.285 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---cC-----------chhHHHHHHHHHHHHHHH
Q 007326 297 MIYVSFDMILGAYLIGNMTALIV---KG-----------SKTEKFRDKMTDLMKYIN 339 (608)
Q Consensus 297 ~~~~~~g~~~~a~~i~~i~~~~~---~~-----------~~~~~~~~~~~~~~~~m~ 339 (608)
+++.++|+.++|++++.+.+.-. +. ...++|+++++...+.++
T Consensus 10 lLi~vIglAL~aFIv~d~~~~~~~~~~~~~~VG~VnGe~Is~~ef~~~v~~~~~~~k 66 (145)
T PF13623_consen 10 LLIIVIGLALFAFIVGDFRSGSGFFGSSQNVVGEVNGEKISYQEFQQRVEQATENYK 66 (145)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCcCCCCCeeEeECCEEcCHHHHHHHHHHHHHHHH
Confidence 45677899999999977643211 11 134678888888776655
No 243
>PLN00212 glutelin; Provisional
Probab=20.51 E-value=1.6e+02 Score=31.26 Aligned_cols=57 Identities=9% Similarity=0.134 Sum_probs=41.9
Q ss_pred HHcccccccCCCeEEcc-CCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecc
Q 007326 408 IRLHEEFFLPGEVIMEK-GNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGE 464 (608)
Q Consensus 408 ~~~~~~~~~~g~~I~~~-g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe 464 (608)
..+....+.+|-+.... .-.+..+.++++|.+.+-..+.+|+...-..+.+|++|=-
T Consensus 348 LSa~rv~L~~gam~~PHwn~nA~eI~yV~rG~g~vqvV~~~g~~vf~~~L~~GdvfVV 405 (493)
T PLN00212 348 MSATRVNLYQNALLSPFWNVNAHSVVYITQGRARVQVVSNNGKTVFNGVLRPGQLLII 405 (493)
T ss_pred eeEEEEEEcCCcccCCeecCCCCEEEEEeecceEEEEEcCCCCEEEEEEEcCCCEEEE
Confidence 34455556666664332 2346789999999999988888888877789999998843
Done!