Query 007326
Match_columns 608
No_of_seqs 496 out of 3983
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 22:57:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007326.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007326hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3beh_A MLL3241 protein; transm 100.0 1.6E-41 5.6E-46 345.3 8.7 340 66-515 3-349 (355)
2 2ptm_A Hyperpolarization-activ 100.0 3.4E-31 1.2E-35 246.5 23.2 191 321-515 4-195 (198)
3 3ukn_A Novel protein similar t 100.0 1.8E-31 6.2E-36 251.2 16.5 194 316-515 2-200 (212)
4 3bpz_A Potassium/sodium hyperp 100.0 2.3E-30 7.9E-35 241.6 21.6 188 321-513 5-193 (202)
5 1orq_C Potassium channel; volt 99.9 1.1E-27 3.7E-32 226.4 15.1 207 75-320 9-220 (223)
6 2r9r_B Paddle chimera voltage 99.9 2.5E-26 8.5E-31 241.2 11.7 229 54-320 161-430 (514)
7 4f8a_A Potassium voltage-gated 99.8 5.8E-21 2E-25 170.7 13.3 144 365-513 5-150 (160)
8 2a9h_A Voltage-gated potassium 99.8 5.6E-20 1.9E-24 159.6 11.1 126 151-321 15-140 (155)
9 3mdp_A Cyclic nucleotide-bindi 99.8 1.6E-19 5.3E-24 157.8 12.3 128 386-513 5-135 (142)
10 3gyd_A CNMP-BD protein, cyclic 99.8 2.6E-19 9E-24 164.2 13.7 149 365-513 13-165 (187)
11 2pqq_A Putative transcriptiona 99.8 1E-18 3.4E-23 154.0 14.5 129 386-514 4-132 (149)
12 3idb_B CAMP-dependent protein 99.8 3.1E-19 1.1E-23 159.6 11.0 129 380-509 31-159 (161)
13 2z69_A DNR protein; beta barre 99.8 1.8E-18 6.2E-23 153.3 13.5 130 385-514 10-140 (154)
14 3ocp_A PRKG1 protein; serine/t 99.8 6.3E-19 2.2E-23 153.3 10.2 131 371-506 7-137 (139)
15 3dn7_A Cyclic nucleotide bindi 99.7 7.6E-18 2.6E-22 155.6 13.2 129 386-514 6-135 (194)
16 4ev0_A Transcription regulator 99.7 9E-18 3.1E-22 157.9 13.7 126 389-514 1-126 (216)
17 3fx3_A Cyclic nucleotide-bindi 99.7 8.7E-18 3E-22 160.5 12.7 132 383-514 7-138 (237)
18 3e97_A Transcriptional regulat 99.7 1.1E-17 3.8E-22 159.1 12.3 130 386-515 5-134 (231)
19 1vp6_A CNBD, cyclic-nucleotide 99.7 2E-17 6.8E-22 143.6 12.8 124 385-515 9-132 (138)
20 2ih3_C Voltage-gated potassium 99.7 1E-17 3.4E-22 140.0 9.4 56 265-320 61-116 (122)
21 3d0s_A Transcriptional regulat 99.7 8.2E-18 2.8E-22 159.5 10.0 129 386-514 5-133 (227)
22 3dv8_A Transcriptional regulat 99.7 3.1E-17 1.1E-21 154.7 13.6 128 387-514 3-132 (220)
23 1zyb_A Transcription regulator 99.7 3.2E-17 1.1E-21 156.0 13.2 131 384-514 15-148 (232)
24 1wgp_A Probable cyclic nucleot 99.7 1.3E-17 4.6E-22 144.5 9.5 119 386-505 5-134 (137)
25 4h33_A LMO2059 protein; bilaye 99.7 2.4E-17 8.1E-22 140.7 9.5 92 265-356 43-135 (137)
26 3dkw_A DNR protein; CRP-FNR, H 99.7 1.4E-17 4.8E-22 157.9 9.0 130 385-514 7-137 (227)
27 3pna_A CAMP-dependent protein 99.7 9.1E-17 3.1E-21 142.2 13.2 120 383-507 34-153 (154)
28 3iwz_A CAP-like, catabolite ac 99.7 9.1E-17 3.1E-21 152.6 13.4 129 386-514 10-144 (230)
29 2gau_A Transcriptional regulat 99.7 5.8E-17 2E-21 154.2 12.0 125 390-514 13-137 (232)
30 4ava_A Lysine acetyltransferas 99.7 1.4E-16 4.9E-21 160.3 14.5 128 385-514 11-138 (333)
31 3rvy_A ION transport protein; 99.7 6.2E-18 2.1E-22 165.6 3.6 201 75-320 31-241 (285)
32 3shr_A CGMP-dependent protein 99.7 2.3E-16 8E-21 156.2 13.6 142 368-514 20-161 (299)
33 3vou_A ION transport 2 domain 99.7 5E-16 1.7E-20 135.0 13.9 112 209-350 26-148 (148)
34 3shr_A CGMP-dependent protein 99.7 1.2E-16 4.1E-21 158.4 10.8 134 383-516 153-287 (299)
35 3ryp_A Catabolite gene activat 99.7 3.7E-16 1.3E-20 146.2 13.0 122 393-514 2-124 (210)
36 2oz6_A Virulence factor regula 99.6 8.4E-16 2.9E-20 143.3 13.3 117 398-514 1-121 (207)
37 2d93_A RAP guanine nucleotide 99.6 4.1E-17 1.4E-21 140.8 3.2 116 382-502 11-128 (134)
38 3eff_K Voltage-gated potassium 99.6 7E-16 2.4E-20 132.8 9.6 89 208-320 7-95 (139)
39 3tnp_B CAMP-dependent protein 99.6 6E-16 2.1E-20 159.7 10.5 132 381-513 139-270 (416)
40 2qcs_B CAMP-dependent protein 99.6 2.8E-15 9.6E-20 147.8 14.7 129 384-512 154-283 (291)
41 1o5l_A Transcriptional regulat 99.6 6.2E-16 2.1E-20 144.9 9.3 125 391-515 3-128 (213)
42 1o7f_A CAMP-dependent RAP1 gua 99.6 1.3E-15 4.4E-20 161.0 11.5 142 372-514 27-170 (469)
43 3kcc_A Catabolite gene activat 99.6 2.6E-15 8.9E-20 145.3 12.7 119 396-514 55-174 (260)
44 2qcs_B CAMP-dependent protein 99.6 5.8E-15 2E-19 145.5 15.2 129 382-515 34-162 (291)
45 2fmy_A COOA, carbon monoxide o 99.6 7.4E-16 2.5E-20 145.2 8.0 121 386-514 3-123 (220)
46 3of1_A CAMP-dependent protein 99.6 2.2E-15 7.5E-20 144.6 10.9 125 385-514 5-129 (246)
47 1ft9_A Carbon monoxide oxidati 99.6 1.3E-15 4.3E-20 143.8 7.4 119 388-514 1-119 (222)
48 4din_B CAMP-dependent protein 99.6 4.3E-15 1.5E-19 151.8 11.4 129 384-512 245-374 (381)
49 4din_B CAMP-dependent protein 99.6 8.5E-15 2.9E-19 149.6 13.2 127 383-514 126-252 (381)
50 3of1_A CAMP-dependent protein 99.6 7E-15 2.4E-19 141.0 11.8 117 384-504 122-238 (246)
51 3tnp_B CAMP-dependent protein 99.6 4.3E-15 1.5E-19 153.4 10.7 130 384-513 264-399 (416)
52 3e6c_C CPRK, cyclic nucleotide 99.6 4.3E-15 1.5E-19 142.9 10.0 124 388-514 10-133 (250)
53 2bgc_A PRFA; bacterial infecti 99.5 5.2E-14 1.8E-18 134.2 12.7 118 396-514 2-124 (238)
54 3la7_A Global nitrogen regulat 99.5 5.1E-14 1.7E-18 134.7 11.4 115 400-514 30-149 (243)
55 2k1e_A Water soluble analogue 99.5 4.1E-15 1.4E-19 120.3 3.1 89 208-320 7-95 (103)
56 1o7f_A CAMP-dependent RAP1 gua 99.5 8.5E-14 2.9E-18 147.0 12.9 124 383-510 333-458 (469)
57 2q67_A Potassium channel prote 99.5 2.1E-13 7.1E-18 112.1 12.2 55 266-320 50-104 (114)
58 4f7z_A RAP guanine nucleotide 99.5 2.3E-13 7.7E-18 156.6 13.3 128 377-505 32-161 (999)
59 3ldc_A Calcium-gated potassium 99.4 3.8E-13 1.3E-17 103.3 9.4 53 266-318 29-81 (82)
60 3ouf_A Potassium channel prote 99.4 5E-13 1.7E-17 106.3 9.8 54 266-319 33-86 (97)
61 3cf6_E RAP guanine nucleotide 99.4 2.5E-13 8.7E-18 148.0 10.6 128 376-507 21-150 (694)
62 3b02_A Transcriptional regulat 99.4 7.8E-13 2.7E-17 121.8 10.0 95 413-514 2-96 (195)
63 2zcw_A TTHA1359, transcription 99.3 3.6E-12 1.2E-16 118.0 7.9 99 407-513 2-102 (202)
64 4f7z_A RAP guanine nucleotide 99.3 1.6E-11 5.4E-16 141.3 13.7 114 383-500 333-448 (999)
65 1xl4_A Inward rectifier potass 99.2 4.5E-11 1.5E-15 115.7 10.8 56 265-320 82-137 (301)
66 1n0q_A 3ANK, 3 ankyrin repeats 99.2 2.2E-11 7.5E-16 97.1 7.3 68 540-607 3-70 (93)
67 4gpm_A Engineered protein OR26 99.2 2.5E-11 8.4E-16 108.6 8.2 79 530-608 61-139 (169)
68 3pjs_K KCSA, voltage-gated pot 99.2 1.1E-12 3.8E-17 116.1 -1.4 56 265-320 67-122 (166)
69 4dxw_A Navrh, ION transport pr 99.2 9E-11 3.1E-15 110.6 10.2 204 75-320 13-225 (229)
70 2qks_A KIR3.1-prokaryotic KIR 99.2 1.6E-10 5.5E-15 112.6 12.0 57 265-321 78-134 (321)
71 1p7b_A Integral membrane chann 99.2 6.4E-11 2.2E-15 115.7 9.1 57 265-321 96-152 (333)
72 3aaa_C Myotrophin, protein V-1 99.1 1.1E-10 3.8E-15 98.4 7.6 78 531-608 32-109 (123)
73 4gpm_A Engineered protein OR26 99.1 2.3E-10 7.7E-15 102.3 9.9 80 529-608 27-106 (169)
74 3um7_A Potassium channel subfa 99.1 2.9E-10 9.8E-15 109.3 9.5 56 265-320 115-170 (309)
75 2zgd_A 3 repeat synthetic anky 99.1 3.2E-10 1.1E-14 93.4 8.0 76 533-608 18-93 (110)
76 4b93_B Ankyrin repeat domain-c 99.1 1.9E-10 6.6E-15 111.4 7.4 79 530-608 143-221 (269)
77 3sya_A G protein-activated inw 99.0 2.4E-09 8.1E-14 104.2 14.8 98 211-321 48-149 (340)
78 3c5r_A BARD-1, BRCA1-associate 99.0 4.9E-10 1.7E-14 96.4 7.7 78 531-608 35-112 (137)
79 2jab_A H10-2-G3; HER2, darpin, 99.0 6.7E-10 2.3E-14 95.4 8.3 78 531-608 39-116 (136)
80 1d9s_A Cyclin-dependent kinase 99.0 5E-10 1.7E-14 96.2 7.0 77 531-608 37-114 (136)
81 3deo_A Signal recognition part 99.0 1.3E-09 4.5E-14 98.8 9.2 79 530-608 67-146 (183)
82 2l6b_A NR1C; ankyrin, consensu 99.0 4.4E-10 1.5E-14 93.4 5.5 78 531-608 34-111 (115)
83 3twr_A Tankyrase-2; ankyrin re 99.0 1.4E-09 4.8E-14 96.8 8.9 78 531-608 67-144 (165)
84 1dcq_A PYK2-associated protein 99.0 1.1E-09 3.9E-14 106.4 8.8 77 532-608 162-241 (278)
85 3aaa_C Myotrophin, protein V-1 98.9 1.3E-09 4.3E-14 91.8 7.5 71 538-608 6-76 (123)
86 1awc_B Protein (GA binding pro 98.9 1.2E-09 4.2E-14 95.8 7.7 78 531-608 59-136 (153)
87 3um7_A Potassium channel subfa 98.9 2.6E-09 8.9E-14 102.7 10.3 55 266-320 225-285 (309)
88 3t8k_A Uncharacterized protein 98.9 1.2E-09 4.1E-14 99.3 7.3 70 537-606 36-115 (186)
89 3ui2_A Signal recognition part 98.9 2.3E-09 8E-14 102.2 9.7 80 529-608 67-147 (244)
90 3f6q_A Integrin-linked protein 98.9 2.3E-09 7.9E-14 96.8 8.6 78 531-608 64-141 (179)
91 2l6b_A NR1C; ankyrin, consensu 98.9 1E-09 3.4E-14 91.2 5.4 73 536-608 6-78 (115)
92 1bi7_B P16INK4A, MTS1, multipl 98.9 1.2E-09 4E-14 96.3 5.8 77 531-607 69-146 (156)
93 2jab_A H10-2-G3; HER2, darpin, 98.9 3E-09 1E-13 91.2 8.2 72 537-608 12-83 (136)
94 3f6q_A Integrin-linked protein 98.9 2.9E-09 9.8E-14 96.2 8.4 78 531-608 31-108 (179)
95 1n0q_A 3ANK, 3 ankyrin repeats 98.9 3.2E-09 1.1E-13 84.3 7.6 67 531-597 27-93 (93)
96 3spc_A Inward-rectifier K+ cha 98.9 3.7E-09 1.3E-13 103.0 9.4 96 212-320 51-151 (343)
97 3twr_A Tankyrase-2; ankyrin re 98.9 3.4E-09 1.2E-13 94.2 8.5 78 531-608 34-111 (165)
98 1bi7_B P16INK4A, MTS1, multipl 98.9 2.2E-09 7.6E-14 94.5 6.8 77 531-608 37-114 (156)
99 1bd8_A P19INK4D CDK4/6 inhibit 98.9 5.4E-09 1.8E-13 91.9 9.3 76 531-607 60-135 (156)
100 4gx0_A TRKA domain protein; me 98.9 5.6E-09 1.9E-13 112.4 11.1 84 208-317 19-104 (565)
101 1d9s_A Cyclin-dependent kinase 98.9 1.1E-09 3.8E-14 94.0 4.5 76 532-608 5-81 (136)
102 1ycs_B 53BP2, P53BP2; ankyrin 98.9 3.8E-09 1.3E-13 100.4 8.4 77 531-607 62-139 (239)
103 3c5r_A BARD-1, BRCA1-associate 98.9 2.2E-09 7.4E-14 92.2 6.1 73 536-608 7-79 (137)
104 2vge_A RELA-associated inhibit 98.9 4.7E-09 1.6E-13 98.9 8.6 78 531-608 46-124 (229)
105 3v30_A DNA-binding protein rfx 98.9 4E-09 1.4E-13 94.5 7.7 77 532-608 62-138 (172)
106 2y1l_E Darpin-8.4; hydrolase-i 98.8 6.2E-09 2.1E-13 93.0 8.7 76 532-607 73-148 (169)
107 3ukm_A Potassium channel subfa 98.8 6.6E-09 2.3E-13 98.2 8.9 54 266-319 202-262 (280)
108 3ukm_A Potassium channel subfa 98.8 4.1E-09 1.4E-13 99.6 7.4 55 265-319 93-147 (280)
109 3ehr_A Osteoclast-stimulating 98.8 4.1E-09 1.4E-13 98.9 7.4 78 531-608 98-176 (222)
110 3v31_A Ankyrin repeat family A 98.8 5E-09 1.7E-13 93.3 7.7 77 532-608 62-138 (167)
111 1n0r_A 4ANK, 4 ankyrin repeats 98.8 6.4E-09 2.2E-13 87.5 7.8 77 532-608 28-104 (126)
112 2y1l_E Darpin-8.4; hydrolase-i 98.8 7.7E-09 2.6E-13 92.4 8.7 78 531-608 39-116 (169)
113 1awc_B Protein (GA binding pro 98.8 6.9E-09 2.4E-13 91.0 8.2 73 536-608 31-103 (153)
114 2rfm_A Putative ankyrin repeat 98.8 4.6E-09 1.6E-13 96.0 7.3 77 532-608 94-170 (192)
115 1oy3_D Transcription factor in 98.8 4.6E-09 1.6E-13 102.3 7.8 71 538-608 191-261 (282)
116 4hbd_A KN motif and ankyrin re 98.8 4.9E-09 1.7E-13 102.0 7.8 75 534-608 178-253 (276)
117 1bd8_A P19INK4D CDK4/6 inhibit 98.8 5.6E-09 1.9E-13 91.8 7.5 77 531-608 28-104 (156)
118 3v30_A DNA-binding protein rfx 98.8 8.1E-09 2.8E-13 92.5 8.3 77 532-608 29-105 (172)
119 1ihb_A P18-INK4C(INK6), cyclin 98.8 6.7E-09 2.3E-13 91.9 7.6 77 532-608 63-140 (162)
120 1ihb_A P18-INK4C(INK6), cyclin 98.8 6.7E-09 2.3E-13 91.9 7.6 77 531-608 30-106 (162)
121 3v31_A Ankyrin repeat family A 98.8 7.4E-09 2.5E-13 92.2 7.5 77 532-608 29-105 (167)
122 1ors_C Potassium channel; volt 98.8 2.9E-09 1E-13 90.0 4.3 109 75-198 7-117 (132)
123 2kyh_A KVAP, voltage-gated pot 98.8 1E-08 3.5E-13 87.8 7.6 101 75-193 22-124 (147)
124 3jue_A Arfgap with coiled-coil 98.8 1.7E-08 5.7E-13 101.8 10.4 72 537-608 233-304 (368)
125 2rfm_A Putative ankyrin repeat 98.8 8.6E-09 3E-13 94.2 7.5 78 531-608 60-137 (192)
126 2vge_A RELA-associated inhibit 98.8 8.6E-09 3E-13 97.1 7.4 74 535-608 17-90 (229)
127 3t8k_A Uncharacterized protein 98.8 2.8E-09 9.5E-14 96.8 3.8 82 527-608 63-157 (186)
128 1k1a_A B-cell lymphoma 3-encod 98.8 1.2E-08 4.1E-13 96.7 8.3 72 537-608 148-219 (241)
129 1yyh_A HN1;, notch 1, ankyrin 98.8 9.5E-09 3.2E-13 98.5 7.6 78 531-608 149-226 (253)
130 3lvq_E ARF-GAP with SH3 domain 98.8 6.1E-09 2.1E-13 110.3 6.9 73 536-608 168-243 (497)
131 2b0o_E UPLC1; arfgap, structur 98.8 9E-09 3.1E-13 101.3 7.5 73 536-608 187-262 (301)
132 3utm_A Tankyrase-1; tankyrase, 98.8 1.3E-08 4.3E-13 102.5 8.6 78 531-608 239-316 (351)
133 1ikn_D Protein (I-kappa-B-alph 98.8 1E-08 3.6E-13 97.0 7.4 76 533-608 111-187 (236)
134 1s70_B 130 kDa myosin-binding 98.8 1.5E-08 5E-13 99.7 8.6 74 535-608 195-268 (299)
135 2dzn_A Probable 26S proteasome 98.7 1.3E-08 4.6E-13 95.6 7.8 78 531-608 132-211 (228)
136 2etb_A Transient receptor pote 98.7 1.5E-08 5.2E-13 97.2 8.3 74 535-608 86-175 (256)
137 3aji_A 26S proteasome non-ATPa 98.7 1.5E-08 5E-13 95.5 8.0 76 533-608 133-208 (231)
138 3jxi_A Vanilloid receptor-rela 98.7 1.2E-08 4E-13 98.2 7.3 77 532-608 86-179 (260)
139 4g8k_A 2-5A-dependent ribonucl 98.7 1.6E-08 5.5E-13 101.4 8.7 73 535-607 21-94 (337)
140 3deo_A Signal recognition part 98.7 1.2E-08 4.2E-13 92.4 6.9 72 536-608 41-113 (183)
141 1oy3_D Transcription factor in 98.7 1.4E-08 4.7E-13 98.9 7.8 78 531-608 150-228 (282)
142 1ycs_B 53BP2, P53BP2; ankyrin 98.7 8.6E-09 2.9E-13 97.9 6.0 71 538-608 36-106 (239)
143 2xai_A ASB-9, ankyrin repeat a 98.7 1.7E-08 5.8E-13 97.2 7.8 77 531-608 126-202 (261)
144 4b93_B Ankyrin repeat domain-c 98.7 1E-08 3.4E-13 99.2 6.1 77 532-608 112-188 (269)
145 2f8y_A Notch homolog 1, transl 98.7 2E-08 6.9E-13 94.0 8.1 77 532-608 118-194 (223)
146 3b7b_A Euchromatic histone-lys 98.7 1.7E-08 6E-13 95.4 7.5 77 532-608 137-213 (237)
147 1s70_B 130 kDa myosin-binding 98.7 2.1E-08 7.3E-13 98.5 7.8 77 532-608 66-142 (299)
148 2dzn_A Probable 26S proteasome 98.7 3.1E-08 1.1E-12 93.0 8.4 78 531-608 99-177 (228)
149 2rfa_A Transient receptor pote 98.7 2.6E-08 8.9E-13 93.9 7.8 75 534-608 70-157 (232)
150 1n0r_A 4ANK, 4 ankyrin repeats 98.7 3E-08 1E-12 83.3 7.0 70 539-608 2-71 (126)
151 3hra_A Ankyrin repeat family p 98.7 3.6E-08 1.2E-12 90.6 8.2 78 531-608 98-181 (201)
152 2pnn_A Transient receptor pote 98.7 3.4E-08 1.2E-12 95.8 8.2 75 534-608 96-187 (273)
153 3utm_A Tankyrase-1; tankyrase, 98.7 3.4E-08 1.2E-12 99.3 8.4 80 529-608 48-127 (351)
154 3ui2_A Signal recognition part 98.7 2.1E-08 7.1E-13 95.5 6.4 71 537-608 43-114 (244)
155 3ehr_A Osteoclast-stimulating 98.7 1.8E-08 6E-13 94.5 5.7 71 538-608 72-143 (222)
156 2xai_A ASB-9, ankyrin repeat a 98.7 2.6E-08 8.8E-13 95.9 7.0 78 529-607 26-103 (261)
157 1n11_A Ankyrin; clathrin, BAND 98.6 2.5E-08 8.5E-13 103.9 7.0 78 531-608 303-380 (437)
158 3ljn_A Hypothetical protein; a 98.6 3.6E-08 1.2E-12 100.0 8.0 76 532-607 166-246 (364)
159 3d9h_A CDNA FLJ77766, highly s 98.6 5E-08 1.7E-12 95.3 8.3 76 532-608 183-258 (285)
160 2f8y_A Notch homolog 1, transl 98.6 6.3E-08 2.2E-12 90.6 8.3 77 532-608 85-161 (223)
161 3d9h_A CDNA FLJ77766, highly s 98.6 3.6E-08 1.2E-12 96.3 6.5 69 532-600 85-153 (285)
162 1yyh_A HN1;, notch 1, ankyrin 98.6 3.5E-08 1.2E-12 94.5 6.2 77 532-608 117-193 (253)
163 3aji_A 26S proteasome non-ATPa 98.6 6.4E-08 2.2E-12 91.1 7.9 78 530-607 64-141 (231)
164 3hra_A Ankyrin repeat family p 98.6 1.1E-07 3.9E-12 87.2 8.9 73 535-607 68-142 (201)
165 2etb_A Transient receptor pote 98.6 3.6E-08 1.2E-12 94.6 4.8 70 539-608 136-224 (256)
166 3kea_A K1L; tropism, ANK repea 98.6 7.2E-08 2.5E-12 94.1 7.0 69 539-607 62-131 (285)
167 3b7b_A Euchromatic histone-lys 98.5 9.8E-08 3.4E-12 90.2 7.5 78 530-607 35-113 (237)
168 4g8k_A 2-5A-dependent ribonucl 98.5 1.5E-07 5.1E-12 94.2 9.2 68 535-602 235-303 (337)
169 1sw6_A Regulatory protein SWI6 98.5 5.4E-08 1.9E-12 97.1 5.8 75 534-608 196-319 (327)
170 1k1a_A B-cell lymphoma 3-encod 98.5 9.9E-08 3.4E-12 90.3 7.1 77 532-608 109-186 (241)
171 2rfa_A Transient receptor pote 98.5 8.5E-08 2.9E-12 90.3 6.6 72 537-608 119-200 (232)
172 2fo1_E LIN-12 protein; beta-ba 98.5 9.8E-08 3.4E-12 97.1 7.4 73 536-608 276-349 (373)
173 3kea_A K1L; tropism, ANK repea 98.5 5.1E-08 1.8E-12 95.2 4.7 75 532-608 24-98 (285)
174 1lnq_A MTHK channels, potassiu 98.5 5.7E-09 1.9E-13 104.5 -2.3 54 267-320 47-100 (336)
175 3jxi_A Vanilloid receptor-rela 98.5 5.5E-08 1.9E-12 93.5 4.5 72 537-608 138-228 (260)
176 1n11_A Ankyrin; clathrin, BAND 98.5 1E-07 3.6E-12 99.2 6.7 79 530-608 38-116 (437)
177 3lvq_E ARF-GAP with SH3 domain 98.5 1.4E-07 4.7E-12 99.9 7.4 75 530-604 198-272 (497)
178 1wdy_A 2-5A-dependent ribonucl 98.5 1.9E-07 6.6E-12 90.6 7.9 73 531-603 211-284 (285)
179 4hbd_A KN motif and ankyrin re 98.5 1.4E-07 4.8E-12 91.5 6.4 77 532-608 138-219 (276)
180 2pnn_A Transient receptor pote 98.5 8.3E-08 2.8E-12 93.0 4.7 71 538-608 147-236 (273)
181 1wdy_A 2-5A-dependent ribonucl 98.4 3E-07 1E-11 89.2 8.2 78 531-608 174-256 (285)
182 1dcq_A PYK2-associated protein 98.4 2.4E-07 8.4E-12 89.8 7.1 71 531-601 197-267 (278)
183 1ikn_D Protein (I-kappa-B-alph 98.4 1.8E-07 6.2E-12 88.4 5.7 77 531-607 142-221 (236)
184 1sw6_A Regulatory protein SWI6 98.4 9.8E-08 3.4E-12 95.2 4.0 80 529-608 120-204 (327)
185 3jue_A Arfgap with coiled-coil 98.4 4.3E-07 1.5E-11 91.4 8.4 70 539-608 199-271 (368)
186 3ljn_A Hypothetical protein; a 98.4 2.5E-07 8.7E-12 93.7 6.7 74 535-608 134-214 (364)
187 3eu9_A Huntingtin-interacting 98.3 1.6E-06 5.4E-11 81.7 9.3 69 539-607 76-144 (240)
188 2b0o_E UPLC1; arfgap, structur 98.3 5.3E-07 1.8E-11 88.5 5.4 68 531-598 218-285 (301)
189 2fo1_E LIN-12 protein; beta-ba 98.3 5.8E-07 2E-11 91.3 5.8 79 530-608 157-238 (373)
190 3eu9_A Huntingtin-interacting 98.2 1.6E-06 5.3E-11 81.7 7.6 78 531-608 34-112 (240)
191 2zgd_A 3 repeat synthetic anky 98.2 1.7E-06 5.9E-11 70.7 6.5 61 531-591 49-109 (110)
192 2aja_A Ankyrin repeat family p 97.8 2.7E-06 9.1E-11 86.0 0.4 69 538-607 127-200 (376)
193 2aja_A Ankyrin repeat family p 97.3 1.9E-05 6.5E-10 79.7 -1.5 57 540-596 164-223 (376)
194 3kg2_A Glutamate receptor 2; I 88.4 0.75 2.5E-05 51.4 7.7 56 264-320 562-617 (823)
195 2ozj_A Cupin 2, conserved barr 80.1 7.5 0.00026 30.6 8.1 64 414-488 44-107 (114)
196 3fjs_A Uncharacterized protein 77.8 8.3 0.00029 30.5 7.7 66 411-487 39-104 (114)
197 3rns_A Cupin 2 conserved barre 75.8 7.4 0.00025 35.4 7.7 70 410-490 39-108 (227)
198 1yhf_A Hypothetical protein SP 68.4 19 0.00065 28.1 7.8 67 411-488 43-109 (115)
199 3lwc_A Uncharacterized protein 64.9 12 0.0004 30.0 5.7 64 413-488 45-109 (119)
200 2pfw_A Cupin 2, conserved barr 63.6 22 0.00076 27.7 7.3 67 411-488 37-103 (116)
201 1zvf_A 3-hydroxyanthranilate 3 61.3 22 0.00075 30.4 6.8 62 425-492 51-115 (176)
202 1o5u_A Novel thermotoga mariti 59.1 46 0.0016 25.5 8.0 62 412-485 35-96 (101)
203 2i45_A Hypothetical protein; n 58.0 15 0.0005 28.4 5.1 68 415-493 35-103 (107)
204 3d0j_A Uncharacterized protein 57.4 21 0.00073 29.2 5.8 65 422-491 44-110 (140)
205 3rns_A Cupin 2 conserved barre 54.7 27 0.00094 31.5 7.0 67 410-487 155-222 (227)
206 1dgw_A Canavalin; duplicated s 54.2 11 0.00039 32.6 4.1 52 410-463 43-94 (178)
207 3fz3_A Prunin; TREE NUT allerg 52.5 18 0.00062 37.1 5.7 60 403-462 389-449 (531)
208 3es1_A Cupin 2, conserved barr 52.2 15 0.0005 31.7 4.4 47 411-462 82-128 (172)
209 3c3v_A Arachin ARAH3 isoform; 51.7 16 0.00056 37.5 5.3 59 404-462 368-427 (510)
210 3d82_A Cupin 2, conserved barr 50.8 38 0.0013 25.4 6.5 54 426-490 48-101 (102)
211 2d5f_A Glycinin A3B4 subunit; 50.2 20 0.00068 36.8 5.7 60 403-462 362-422 (493)
212 1fxz_A Glycinin G1; proglycini 50.1 20 0.0007 36.5 5.8 54 409-462 339-393 (476)
213 4e2g_A Cupin 2 conserved barre 49.2 23 0.0008 28.1 5.1 77 410-497 43-123 (126)
214 2gu9_A Tetracenomycin polyketi 49.1 24 0.00083 27.2 5.1 46 411-462 24-72 (113)
215 1v70_A Probable antibiotics sy 47.4 29 0.00099 26.1 5.3 46 411-462 31-77 (105)
216 2qnk_A 3-hydroxyanthranilate 3 46.3 35 0.0012 31.6 6.1 65 420-492 44-108 (286)
217 2e9q_A 11S globulin subunit be 46.0 26 0.00088 35.6 5.7 60 403-462 317-377 (459)
218 3es4_A Uncharacterized protein 45.3 25 0.00084 28.0 4.3 44 415-464 49-92 (116)
219 3bcw_A Uncharacterized protein 45.1 20 0.00068 28.8 3.9 44 414-463 55-98 (123)
220 2bnm_A Epoxidase; oxidoreducta 44.8 61 0.0021 28.2 7.6 48 413-462 122-172 (198)
221 2r9r_B Paddle chimera voltage 44.4 14 0.00046 38.4 3.5 17 177-193 307-323 (514)
222 3h8u_A Uncharacterized conserv 44.4 40 0.0014 26.6 5.8 48 410-462 41-89 (125)
223 2pyt_A Ethanolamine utilizatio 43.6 21 0.00072 29.1 3.9 63 413-488 62-124 (133)
224 4axo_A EUTQ, ethanolamine util 43.1 69 0.0024 26.7 7.0 52 427-489 83-134 (151)
225 3ibm_A Cupin 2, conserved barr 42.9 57 0.002 27.7 6.8 45 412-462 60-104 (167)
226 1yfu_A 3-hydroxyanthranilate-3 41.5 32 0.0011 29.4 4.7 59 427-492 54-113 (174)
227 1fi2_A Oxalate oxidase, germin 39.8 47 0.0016 29.2 6.0 53 410-462 74-129 (201)
228 3ksc_A LEGA class, prolegumin; 39.7 37 0.0013 34.7 5.7 60 403-462 353-413 (496)
229 2fqp_A Hypothetical protein BP 39.6 24 0.00084 26.6 3.5 47 412-462 22-69 (97)
230 1orq_C Potassium channel; volt 39.5 49 0.0017 29.6 6.1 17 172-188 99-115 (223)
231 3i7d_A Sugar phosphate isomera 39.3 27 0.00092 29.6 4.1 45 412-462 47-93 (163)
232 3l2h_A Putative sugar phosphat 39.0 26 0.00089 29.5 4.0 46 411-462 49-96 (162)
233 2vqa_A SLL1358 protein, MNCA; 38.6 37 0.0013 33.1 5.6 50 412-462 56-106 (361)
234 1j58_A YVRK protein; cupin, de 37.7 37 0.0013 33.5 5.4 52 410-462 81-132 (385)
235 1sfn_A Conserved hypothetical 37.6 63 0.0022 29.5 6.6 49 409-463 166-215 (246)
236 2kyh_A KVAP, voltage-gated pot 37.6 25 0.00085 29.3 3.5 17 177-193 111-127 (147)
237 4e2q_A Ureidoglycine aminohydr 37.5 54 0.0019 30.4 6.1 69 411-490 73-142 (266)
238 3kgz_A Cupin 2 conserved barre 36.8 30 0.001 29.1 4.0 44 413-462 49-92 (156)
239 3jzv_A Uncharacterized protein 36.8 29 0.001 29.6 3.9 44 413-462 58-101 (166)
240 4i4a_A Similar to unknown prot 36.7 1E+02 0.0035 24.2 7.2 76 413-499 39-118 (128)
241 2xp1_A SPT6; transcription, IW 35.9 99 0.0034 26.6 7.1 39 390-434 12-50 (178)
242 2cav_A Protein (canavalin); vi 35.6 27 0.00094 35.2 4.0 53 409-463 87-139 (445)
243 2q30_A Uncharacterized protein 35.5 1E+02 0.0035 23.2 6.8 66 412-487 37-104 (110)
244 2b8m_A Hypothetical protein MJ 34.5 38 0.0013 26.5 4.0 44 414-462 33-76 (117)
245 3kgl_A Cruciferin; 11S SEED gl 33.6 48 0.0016 33.5 5.4 60 403-462 318-378 (466)
246 1ors_C Potassium channel; volt 33.4 44 0.0015 27.1 4.3 23 175-197 97-119 (132)
247 2vpv_A Protein MIF2, MIF2P; nu 33.3 37 0.0013 28.9 3.9 31 427-463 109-139 (166)
248 1vj2_A Novel manganese-contain 32.7 40 0.0014 26.9 3.9 44 413-462 53-96 (126)
249 3cew_A Uncharacterized cupin p 32.6 42 0.0014 26.6 4.0 45 412-462 30-76 (125)
250 1o4t_A Putative oxalate decarb 32.6 44 0.0015 26.9 4.2 45 412-462 61-106 (133)
251 2vqa_A SLL1358 protein, MNCA; 32.5 63 0.0021 31.4 6.1 53 410-463 236-289 (361)
252 3qac_A 11S globulin SEED stora 31.7 58 0.002 33.0 5.6 61 403-463 318-379 (465)
253 2e9q_A 11S globulin subunit be 31.5 42 0.0014 34.0 4.6 63 401-463 56-138 (459)
254 1y9q_A Transcriptional regulat 31.4 64 0.0022 27.9 5.4 44 413-462 109-154 (192)
255 3beh_A MLL3241 protein; transm 31.3 4 0.00014 40.1 -3.0 11 222-232 162-172 (355)
256 1sfn_A Conserved hypothetical 30.8 1.4E+02 0.0048 27.0 7.8 65 412-489 54-118 (246)
257 3bu7_A Gentisate 1,2-dioxygena 30.6 68 0.0023 31.7 5.8 73 411-494 297-372 (394)
258 1sq4_A GLXB, glyoxylate-induce 30.2 56 0.0019 30.5 5.0 48 409-462 192-240 (278)
259 2oa2_A BH2720 protein; 1017534 29.7 97 0.0033 25.4 6.0 51 412-462 47-98 (148)
260 4b29_A Dimethylsulfoniopropion 29.6 75 0.0026 28.3 5.3 43 415-462 139-181 (217)
261 2ea7_A 7S globulin-1; beta bar 29.5 43 0.0015 33.7 4.2 52 409-462 62-113 (434)
262 2phl_A Phaseolin; plant SEED s 28.8 39 0.0013 33.5 3.7 51 409-461 53-103 (397)
263 1uij_A Beta subunit of beta co 28.4 45 0.0015 33.3 4.2 52 409-462 50-101 (416)
264 1fxz_A Glycinin G1; proglycini 28.1 53 0.0018 33.5 4.7 63 401-463 41-124 (476)
265 2f4p_A Hypothetical protein TM 27.9 1.1E+02 0.0038 25.0 6.0 46 412-462 52-97 (147)
266 2o1q_A Putative acetyl/propion 27.8 66 0.0022 26.5 4.5 71 410-488 46-116 (145)
267 1j58_A YVRK protein; cupin, de 27.4 72 0.0025 31.3 5.6 53 410-463 259-312 (385)
268 3h7j_A Bacilysin biosynthesis 27.4 74 0.0025 28.9 5.2 45 413-463 150-195 (243)
269 2q1z_B Anti-sigma factor CHRR, 26.8 85 0.0029 27.4 5.3 65 409-488 126-192 (195)
270 4e2q_A Ureidoglycine aminohydr 25.1 83 0.0028 29.1 5.0 48 409-462 187-235 (266)
271 2phl_A Phaseolin; plant SEED s 25.0 67 0.0023 31.8 4.6 54 409-462 240-300 (397)
272 2qjv_A Uncharacterized IOLB-li 25.0 1.8E+02 0.0062 26.8 7.2 77 409-490 30-110 (270)
273 1sef_A Conserved hypothetical 24.8 80 0.0027 29.3 5.0 47 410-462 184-231 (274)
274 4dxw_A Navrh, ION transport pr 24.8 88 0.003 28.0 5.2 15 181-195 101-115 (229)
275 3s7i_A Allergen ARA H 1, clone 24.7 59 0.002 32.4 4.2 50 411-462 47-96 (418)
276 1lr5_A Auxin binding protein 1 24.6 69 0.0024 26.8 4.2 51 412-462 45-98 (163)
277 3h7j_A Bacilysin biosynthesis 24.4 78 0.0027 28.7 4.8 47 410-462 36-82 (243)
278 1x82_A Glucose-6-phosphate iso 23.6 1E+02 0.0035 26.7 5.2 33 429-462 97-129 (190)
279 2kwv_A RAD30 homolog B, DNA po 23.5 28 0.00096 22.1 1.0 19 365-383 17-35 (48)
280 1rc6_A Hypothetical protein YL 23.5 75 0.0026 29.2 4.5 46 412-463 63-110 (261)
281 1juh_A Quercetin 2,3-dioxygena 22.4 2.6E+02 0.009 26.8 8.4 70 418-497 262-334 (350)
282 2opk_A Hypothetical protein; p 21.4 88 0.003 24.2 3.9 34 426-463 51-84 (112)
283 3ht1_A REMF protein; cupin fol 21.2 54 0.0018 26.6 2.7 31 428-462 59-89 (145)
284 3bu7_A Gentisate 1,2-dioxygena 21.1 57 0.0019 32.3 3.2 69 411-489 126-195 (394)
285 3nw4_A Gentisate 1,2-dioxygena 20.2 2E+02 0.0067 28.1 6.8 75 412-497 283-357 (368)
No 1
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=100.00 E-value=1.6e-41 Score=345.30 Aligned_cols=340 Identities=17% Similarity=0.153 Sum_probs=134.6
Q ss_pred EcCCChhHHHHHHHHHHHHHHHHHHhhhhheeccC--CCcCeehHHHHHHHHHHHHHHhhceeeEEeCCCcEEeeccHHH
Q 007326 66 FHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRG--LSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPI 143 (608)
Q Consensus 66 i~p~s~~~~~w~~~~~~~~~~~~~~~p~~~~f~~~--~~~~~~~~~~~~~~if~~d~~l~f~t~~~~~~~~~~i~~~~~i 143 (608)
+.|.|+.. +.+++++++.+++++.+....... ....+..++.++-++|++|+++++..+.. .
T Consensus 3 ~~p~s~~f---~~~~~~~i~ls~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~f~~e~~~r~~~~~~--~----------- 66 (355)
T 3beh_A 3 VLPFLRIY---APLNAVLAAPGLLAVAALTIPDMSGRSRLALAALLAVIWGAYLLQLAATLLKRRA--G----------- 66 (355)
T ss_dssp ----CCSS---SSHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS--C-----------
T ss_pred CCchhHHH---HHHHHHHHHHHHHHHHHHcccchhhhHHHHHHHHHhHHHHHHHHHHHHhcccccc--c-----------
Confidence 36777754 344444444555554443221111 11123345556666689999999854311 1
Q ss_pred HHHHhhc-cchhHHHhh-ccHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhhHHHHHHHHHHHHHHH
Q 007326 144 ALRYLRS-SFIIDLFSC-MPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFF---HKMEKDIRINYMFSRIVKLIAVELY 218 (608)
Q Consensus 144 ~~~y~~~-~f~iDll~~-lP~~~~~~~~~~~~~~~~l~llrl~rl~r~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~ 218 (608)
.+|.++ |.++|++++ +|++..+.. + . +.+|++|++|++|+.|+. +.+..... .....+..++..+++
T Consensus 67 -~~~~~~~~~i~Dl~~i~~p~~~~~~~-~-~---~~~r~lr~~R~lrl~r~~~~~~~l~~~l~--~~~~~l~~~~~~~~~ 138 (355)
T 3beh_A 67 -VVRDRTPKIAIDVLAVLVPLAAFLLD-G-S---PDWSLYCAVWLLKPLRDSTFFPVLGRVLA--NEARNLIGVTTLFGV 138 (355)
T ss_dssp -SSCCCHHHHHHHHHHHHHHHHHHHSC-C-S---GGGGGGGGGGGSHHHHTCSSHHHHHHHHH--HTHHHHHHHHHHHHH
T ss_pred -ceeccCcchHHHHHHHHHHHHHHHhc-c-c---hhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 345555 569999999 688765421 1 1 233444444444444443 33332221 223356667777788
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCcccccccccCCCCcccccccchHHHHHHHHHHHhhhhcccccCCcccCChhhHHHHHH
Q 007326 219 CSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMI 298 (608)
Q Consensus 219 ~~h~~ac~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~ 298 (608)
++|++||++|.++...++ +.+..|.+|+||+++||||+||||++|.|+.|++++++
T Consensus 139 ~~~~~a~~~~~~e~~~~~------------------------~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~ 194 (355)
T 3beh_A 139 VLFAVALAAYVIERDIQP------------------------EKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGA 194 (355)
T ss_dssp HHHHHHHHHHHHHTTTCH------------------------HHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCC------------------------cccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHH
Confidence 899999999998753211 22456889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhccccHHHHHhhCCHHHHH
Q 007326 299 YVSFDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESSYTEASVLQDIPISIRA 378 (608)
Q Consensus 299 ~~~~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~~m~~~~l~~~l~~~v~~y~~~~~~~~~~~~~~l~~lp~~l~~ 378 (608)
++++|++++++++|.+++.+.+.. ++ +++.
T Consensus 195 ~~~~g~~~~~~~~~~i~~~~~~~~-----~~----------------------~~~~----------------------- 224 (355)
T 3beh_A 195 VMMSGIGIFGLWAGILATGFYQEV-----RR----------------------GDFV----------------------- 224 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----HH----------------------HHHH-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HH----------------------Hhhc-----------------------
Confidence 999999999999999988664310 00 0000
Q ss_pred HHHHHHhHhhhcccccccCCCHHHHHHHHHHcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCC
Q 007326 379 KISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHP 458 (608)
Q Consensus 379 ~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~ 458 (608)
...+.++++|+|+++++++++.+...++.+.++|||+|+++||+++++|+|.+|.++++..+ ...+++
T Consensus 225 -----~~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~-------~~~l~~ 292 (355)
T 3beh_A 225 -----RNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN-------PVELGP 292 (355)
T ss_dssp -----HHHC-----------------------------------------------------------------------
T ss_pred -----ccchhhhcccccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeeEEEEEECC-------eeEECC
Confidence 02467889999999999999999999999999999999999999999999999999998743 257999
Q ss_pred CCeecchhhhcCCCcccEEEEeeceeeEEechhhHHHHHHHhhhcHHHHHHHHhccc
Q 007326 459 NSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGK 515 (608)
Q Consensus 459 G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~l~~~~ 515 (608)
|++|||.+++.+.|+.++++|.++|+++.+++++|.++++++|++...+.+.+.++.
T Consensus 293 G~~fGe~~~l~~~~~~~~~~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~l~~rl 349 (355)
T 3beh_A 293 GAFFGEMALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALERR 349 (355)
T ss_dssp ---------------------------------------------------------
T ss_pred CCEEeehHHhCCCCcceEEEECccEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998888777643
No 2
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.98 E-value=3.4e-31 Score=246.47 Aligned_cols=191 Identities=21% Similarity=0.466 Sum_probs=180.1
Q ss_pred CchhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhc-cccHHHHHhhCCHHHHHHHHHHHhHhhhcccccccCCC
Q 007326 321 GSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYES-SYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCS 399 (608)
Q Consensus 321 ~~~~~~~~~~~~~~~~~m~~~~l~~~l~~~v~~y~~~~~~~-~~~~~~~l~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~ 399 (608)
++++.+|+++++.+++||+++++|++||.||++|++|.|+. ..+++++++.||++||.++..+.+.++++++|+|++++
T Consensus 4 ~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~~~~~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f~~l~ 83 (198)
T 2ptm_A 4 DSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYRGKMFDERHIFREVSESIRQDVANYNCRDLVASVPFFVGAD 83 (198)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCCCCSHHHHHHSCHHHHHHHHHHHTHHHHHHCGGGTTCC
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCcchhcCC
Confidence 35678999999999999999999999999999999999975 45688999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecchhhhcCCCcccEEEE
Q 007326 400 SEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQV 479 (608)
Q Consensus 400 ~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a 479 (608)
++++..++..++.+.|.||++|+++|++++++|||.+|.|+++. .+|+ ++..+++|++||+.+++.+.++.++++|
T Consensus 84 ~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~--~~g~--~~~~l~~G~~fGe~~~~~~~~~~~~~~a 159 (198)
T 2ptm_A 84 SNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIM--SDGV--IATSLSDGSYFGEICLLTRERRVASVKC 159 (198)
T ss_dssp HHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEEC--TTSC--EEEEECTTCEESCHHHHHSSCCSSEEEE
T ss_pred HHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEe--cCCe--EEEEecCCCEechHHHcCCCccceEEEE
Confidence 99999999999999999999999999999999999999999986 4565 7899999999999999999999999999
Q ss_pred eeceeeEEechhhHHHHHHHhhhcHHHHHHHHhccc
Q 007326 480 CELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGK 515 (608)
Q Consensus 480 ~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~l~~~~ 515 (608)
.++|+++.+++++|.++++.+|++...+.+.+.++.
T Consensus 160 ~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~rl 195 (198)
T 2ptm_A 160 ETYCTLFSLSVQHFNQVLDEFPAMRKTMEEIAVRRL 195 (198)
T ss_dssp SSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHTCC
T ss_pred eeEEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988887743
No 3
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.97 E-value=1.8e-31 Score=251.23 Aligned_cols=194 Identities=20% Similarity=0.420 Sum_probs=174.7
Q ss_pred HHHHc-CchhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhc--cccHHHHHhhCCHHHHHHHHHHHhHhhhccc
Q 007326 316 ALIVK-GSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYES--SYTEASVLQDIPISIRAKISQTLYLPYIEKV 392 (608)
Q Consensus 316 ~~~~~-~~~~~~~~~~~~~~~~~m~~~~l~~~l~~~v~~y~~~~~~~--~~~~~~~l~~lp~~l~~~i~~~~~~~~l~~~ 392 (608)
+++++ ++++.+|+++++.+++||+++++|++||.||++|++|.|+. +.+++++++.||++||.++..+++..++ ++
T Consensus 2 ~ii~~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~-~~ 80 (212)
T 3ukn_A 2 AMDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELL-QL 80 (212)
T ss_dssp ----------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGGG-GS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHHHHHH-hc
Confidence 34555 56678999999999999999999999999999999999974 4668889999999999999999998887 89
Q ss_pred ccccCCCHHHHHHHHHHcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecchhhhcCC-
Q 007326 393 PLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNI- 471 (608)
Q Consensus 393 ~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~- 471 (608)
|+|++++++++..++..++.+.|.||++|+++|++++++|||.+|.|+++. +| .++..+++|++||+.+++.+.
T Consensus 81 ~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~---~~--~~~~~l~~G~~fGe~~~~~~~~ 155 (212)
T 3ukn_A 81 PLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLK---DN--TVLAILGKGDLIGSDSLTKEQV 155 (212)
T ss_dssp GGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEES---SS--CEEEEECTTCEEECSCCSSSSC
T ss_pred HHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEE---CC--eEEEEecCCCCcCcHHhccCCC
Confidence 999999999999999999999999999999999999999999999999986 34 578999999999999999988
Q ss_pred -CcccEEEEeeceeeEEechhhHHHHHHHhhhcHHHHHHHHhccc
Q 007326 472 -PQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGK 515 (608)
Q Consensus 472 -~~~~~~~a~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~l~~~~ 515 (608)
++.++++|.++|+++.+++++|.++++.+|++...+++.+.++.
T Consensus 156 ~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~~l 200 (212)
T 3ukn_A 156 IKTNANVKALTYCDLQYISLKGLREVLRLYPEYAQKFVSEIQHDL 200 (212)
T ss_dssp CBBCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHE
T ss_pred CCcceEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999998887744
No 4
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.97 E-value=2.3e-30 Score=241.60 Aligned_cols=188 Identities=23% Similarity=0.453 Sum_probs=176.5
Q ss_pred CchhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhc-cccHHHHHhhCCHHHHHHHHHHHhHhhhcccccccCCC
Q 007326 321 GSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYES-SYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCS 399 (608)
Q Consensus 321 ~~~~~~~~~~~~~~~~~m~~~~l~~~l~~~v~~y~~~~~~~-~~~~~~~l~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~ 399 (608)
+.++.+|+++++.+++||+++++|++||.||++|++|.|+. ..+++++++.||+.||.++..+.+.++++++|+|++++
T Consensus 5 ~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~~~~~e~~il~~l~~~L~~~i~~~~~~~~l~~~~~f~~l~ 84 (202)
T 3bpz_A 5 DSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGELNGPLREKIVNFNCRKLVASMPLFANAD 84 (202)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHSCHHHHHHHHHHHTHHHHHTCHHHHTSC
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCCchhcCC
Confidence 45678999999999999999999999999999999999974 46789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecchhhhcCCCcccEEEE
Q 007326 400 SEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQV 479 (608)
Q Consensus 400 ~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a 479 (608)
++++..++..++...|.||++|+++|++++++|||.+|.|+++. .+|++ ..+++|++||+.+++.+.++.++++|
T Consensus 85 ~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~--~~g~~---~~l~~G~~fGe~~~~~~~~~~~~v~a 159 (202)
T 3bpz_A 85 PNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT--KGNKE---MKLSDGSYFGEICLLTRGRRTASVRA 159 (202)
T ss_dssp HHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEC--TTSCC---EEEETTCEECHHHHHHCSBCSSEEEE
T ss_pred HHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEE--CCCeE---EEEcCCCEeccHHHhcCCCcccEEEE
Confidence 99999999999999999999999999999999999999999975 46654 36899999999999999999999999
Q ss_pred eeceeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007326 480 CELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513 (608)
Q Consensus 480 ~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~l~~ 513 (608)
.++|+++.|++++|.++++.+|.+...+.+.+..
T Consensus 160 ~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~ 193 (202)
T 3bpz_A 160 DTYCRLYSLSVDNFNEVLEEYPMMRRAFETVAID 193 (202)
T ss_dssp SSCEEEEEEEHHHHHHHHHHSGGGHHHHHHHHHH
T ss_pred eeEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 9999999999999999999999999988887766
No 5
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.95 E-value=1.1e-27 Score=226.36 Aligned_cols=207 Identities=20% Similarity=0.189 Sum_probs=152.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhe--eccCCCcCeehHHHHHHHHHHHHHHhhceeeEEeCCCcEEeeccHHHHHHHhhccc
Q 007326 75 AWTKFILIWAVYSSIFTPVEFG--FFRGLSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRSSF 152 (608)
Q Consensus 75 ~w~~~~~~~~~~~~~~~p~~~~--f~~~~~~~~~~~~~~~~~if~~d~~l~f~t~~~~~~~~~~i~~~~~i~~~y~~~~f 152 (608)
.|+.+++++++++.++..+... +..+....+..+|.+++++|++|+++|++++.. +++|+|+ +
T Consensus 9 ~f~~~i~~lil~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~iF~~e~~lr~~~~~~--------------~~~y~~~-~ 73 (223)
T 1orq_C 9 LVELGVSYAALLSVIVVVVECTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKSGD--------------PAGYVKK-T 73 (223)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHTTSC--------------HHHHHHH-H
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHHHHHHccccc--------------HHHHHHH-h
Confidence 5888888888888887776543 333345567889999999999999999998731 3899998 8
Q ss_pred hhHHHhhccHHHHHhhcCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007326 153 IIDLFSCMPWDLIYKASGR---KEAVRYLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYY 229 (608)
Q Consensus 153 ~iDll~~lP~~~~~~~~~~---~~~~~~l~llrl~rl~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~h~~ac~~~~ 229 (608)
++|+++++|++........ ...++.+|++|++|+.|+.+..++..+.........++..++..+++++|++||++|+
T Consensus 74 iiDllailP~~~~~~~~~~~~~~~~lr~lRllRllR~~r~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 153 (223)
T 1orq_C 74 LYEIPALVPAGLLALIEGHLAGLGLFRLVRLLRFLRILLIISRGSKFLSAIADAADKIRFYHLFGAVMLTVLYGAFAIYI 153 (223)
T ss_dssp HHHCTTHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999876531111 1235566666666666655422222111111111124666777788889999999998
Q ss_pred HhhcCCCCCCCcccccccccCCCCcccccccchHHHHHHHHHHHhhhhcccccCCcccCChhhHHHHHHHHHHHHHHHHH
Q 007326 230 LATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAY 309 (608)
Q Consensus 230 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~ 309 (608)
++...++ +...+|.+|+||+++||||+||||++|.|+.|++++++++++|+.++++
T Consensus 154 ~e~~~~~------------------------~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~ 209 (223)
T 1orq_C 154 VEYPDPN------------------------SSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTL 209 (223)
T ss_dssp TTSSSTT------------------------CSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCcC------------------------CCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHH
Confidence 7642111 1123588999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHc
Q 007326 310 LIGNMTALIVK 320 (608)
Q Consensus 310 ~i~~i~~~~~~ 320 (608)
++|.+++.+.+
T Consensus 210 ~i~~i~~~~~~ 220 (223)
T 1orq_C 210 LIGTVSNMFQK 220 (223)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 6
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.93 E-value=2.5e-26 Score=241.24 Aligned_cols=229 Identities=15% Similarity=0.187 Sum_probs=163.9
Q ss_pred ccCccccccceEEcCC-ChhHHHHHHHHHHHHHHHHHHhhhhhe--eccC--------------------------CCcC
Q 007326 54 LSGFRHFSRNLVFHPD-NRWYRAWTKFILIWAVYSSIFTPVEFG--FFRG--------------------------LSKN 104 (608)
Q Consensus 54 ~~~~~~~~~~~~i~p~-s~~~~~w~~~~~~~~~~~~~~~p~~~~--f~~~--------------------------~~~~ 104 (608)
+++++.+.+..+-+|. |...++++.+++++++.++++..+... +... ....
T Consensus 161 ~~~~r~~lw~l~e~p~sS~~a~~f~~~~i~~Illsii~~~leT~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (514)
T 2r9r_B 161 ENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLPIFRDENEDMHGGGVTFHTYSQSTIGYQQSTSFTDP 240 (514)
T ss_dssp SCSSHHHHHHTTTCTTSCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHTCSTTTTSCCCCHHHHHHHHHSSCCCTTCCCH
T ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccccccccchhhhH
Confidence 4455556666666787 466788888888888888777766432 1111 1234
Q ss_pred eehHHHHHHHHHHHHHHhhceeeEEeCCCcEEeeccHHHHHHHhhc-cchhHHHhhccHHHHHhhcC----------chh
Q 007326 105 LYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRS-SFIIDLFSCMPWDLIYKASG----------RKE 173 (608)
Q Consensus 105 ~~~~~~~~~~if~~d~~l~f~t~~~~~~~~~~i~~~~~i~~~y~~~-~f~iDll~~lP~~~~~~~~~----------~~~ 173 (608)
+.++|.++.++|++|+++|++++.. .++|+++ |.++|+++++|+++.+.... ...
T Consensus 241 l~~ie~i~~~iFtiE~ilR~~~~~~--------------k~~Y~ks~wniiDli~iip~~i~l~~~~~~~~~~~~~~~~~ 306 (514)
T 2r9r_B 241 FFIVETLCIIWFSFEFLVRFFACPS--------------KAGFFTNIMNIIDIVAIIPYYVTIFLTESNKSVLQFQNVRR 306 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSC--------------SSSSTTSHHHHHHHHTTHHHHHHHHHHHTSCSHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCc--------------HHHHHhchhHHHHHHHHHHHHHHHHhhhccccchhhhhHHH
Confidence 6789999999999999999987621 1589999 56999999999987654321 122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccCCC
Q 007326 174 AVRYLLWIRLYRVRKVSQFFHKMEKDIR-INYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDY 252 (608)
Q Consensus 174 ~~~~l~llrl~rl~r~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~h~~ac~~~~~~~~~~~~~~~~~w~~~~~~~~~ 252 (608)
.++++|++|++|++|+.++...++.... +......+..++++++++++++|+++|+++...+.
T Consensus 307 ~lrvlRllRvlRilkL~r~~~~l~~l~~tl~~s~~~l~~ll~~l~i~~~if~~~~~~~e~~~~~---------------- 370 (514)
T 2r9r_B 307 VVQIFRIMRILRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADERD---------------- 370 (514)
T ss_dssp HHHHHHHHGGGGGGGGGGSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTT----------------
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeccCCC----------------
Confidence 4556666666666666666555544322 12223345556666677788889988876532110
Q ss_pred CcccccccchHHHHHHHHHHHhhhhcccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 007326 253 SYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK 320 (608)
Q Consensus 253 ~~~~~~~~~~~~~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~ 320 (608)
+.+..|.+|+||+++||||+||||+.|.|..+++++++++++|+++++++++.+.+.+..
T Consensus 371 --------~~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~ 430 (514)
T 2r9r_B 371 --------SQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNY 430 (514)
T ss_dssp --------CSCSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred --------ccccchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 112457799999999999999999999999999999999999999999999999887765
No 7
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.85 E-value=5.8e-21 Score=170.68 Aligned_cols=144 Identities=24% Similarity=0.391 Sum_probs=127.2
Q ss_pred HHHHHhhCCHHHHHHHHHHHhHhhhcccccccCCCHHHHHHHHHHcccccccCCCeEEccCCccCeEEEEEeeEEEEEEe
Q 007326 365 EASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGI 444 (608)
Q Consensus 365 ~~~~l~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~ 444 (608)
.+++++.||+.+|.++..+.+.++++++|+|+++++++++.++..++.+.|++|++|+++|++++.+|+|.+|.|+++.
T Consensus 5 ~~~il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~- 83 (160)
T 4f8a_A 5 TEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQ- 83 (160)
T ss_dssp ----------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEE-
T ss_pred hHHHHHHCCHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEE-
Confidence 4568999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred ccCCcceeeEeeCCCCeecchhhhcC--CCcccEEEEeeceeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007326 445 EENGTEDYVSYLHPNSSFGEVSILCN--IPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513 (608)
Q Consensus 445 ~~~g~~~~~~~l~~G~~fGe~~~~~~--~~~~~~~~a~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~l~~ 513 (608)
++.++..+++|++||+.+++.+ .++.++++|.++|+++.+++++|.++++++|++...+++.+..
T Consensus 84 ----~~~~~~~~~~G~~fG~~~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 150 (160)
T 4f8a_A 84 ----DDEVVAILGKGDVFGDVFWKEATLAQSCANVRALTYCDLHVIKRDALQKVLEFYTAFSHSFSRNLIL 150 (160)
T ss_dssp ----TTEEEEEEETTCEEECCTTTCSSCCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHCCC
T ss_pred ----CCEEEEEecCCCEeCcHHHhcCcccceEEEEEECCceEEEEEcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2358899999999999999988 6899999999999999999999999999999999998888744
No 8
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.81 E-value=5.6e-20 Score=159.63 Aligned_cols=126 Identities=17% Similarity=0.147 Sum_probs=70.4
Q ss_pred cchhHHHhhccHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007326 151 SFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYL 230 (608)
Q Consensus 151 ~f~iDll~~lP~~~~~~~~~~~~~~~~l~llrl~rl~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~h~~ac~~~~~ 230 (608)
+-++|+++++|+ ++.+|++|++|++ +.|+.. ..... .+...++.+++++.++++++|++
T Consensus 15 ~~~~dli~~lp~------------lr~lRllRi~ril-l~r~~~------~l~~~--~~~~~~~~~~~~i~~~a~~~~~~ 73 (155)
T 2a9h_A 15 EGRGRLIKHMPP------------MLSGLLARLVKLL-LGRHGS------ALHWR--AAGAATVLLVIVLLAGSYLAVLA 73 (155)
T ss_dssp --------------------------------------------------CCHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH------------HHHHHHHHHHHHH-HHHHHH------HHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 348999999997 4556666666665 444311 11111 12223333444455677777777
Q ss_pred hhcCCCCCCCcccccccccCCCCcccccccchHHHHHHHHHHHhhhhcccccCCcccCChhhHHHHHHHHHHHHHHHHHH
Q 007326 231 ATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYL 310 (608)
Q Consensus 231 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~ 310 (608)
+...++ +.+..|.+|+||+++|+|||||||++|.|..+++++++++++|+.+++++
T Consensus 74 E~~~~~------------------------~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~ 129 (155)
T 2a9h_A 74 ERGAPG------------------------AALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLV 129 (155)
T ss_dssp HTTSSC------------------------SSTTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCC------------------------CccCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHH
Confidence 643211 11245789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcC
Q 007326 311 IGNMTALIVKG 321 (608)
Q Consensus 311 i~~i~~~~~~~ 321 (608)
++.+++.+.+.
T Consensus 130 ~~~i~~~~~~~ 140 (155)
T 2a9h_A 130 FAAVATWFVGR 140 (155)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHHHH
Confidence 99999998873
No 9
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.81 E-value=1.6e-19 Score=157.82 Aligned_cols=128 Identities=16% Similarity=0.236 Sum_probs=115.7
Q ss_pred HhhhcccccccCCCHHHHHHHHHHcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCccee---eEeeCCCCee
Q 007326 386 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDY---VSYLHPNSSF 462 (608)
Q Consensus 386 ~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~---~~~l~~G~~f 462 (608)
.+.++++|+|++++++.++.++..++.+.|++|++|+++|++++.+|+|.+|.|+++..+.+|++.+ +..+++|++|
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~f 84 (142)
T 3mdp_A 5 PERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIF 84 (142)
T ss_dssp TTGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEE
T ss_pred HHHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEe
Confidence 4678999999999999999999999999999999999999999999999999999999888998888 9999999999
Q ss_pred cchhhhcCCCcccEEEEeeceeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007326 463 GEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513 (608)
Q Consensus 463 Ge~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~l~~ 513 (608)
|+.+++.+.++.++++|.++|+++.+++++|.++++++|.+...+++.+.+
T Consensus 85 G~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~l~~ 135 (142)
T 3mdp_A 85 GVSSLIKPYHYTSSARATKPVRVVDINGARLREMSENNQALGQVLMNNVAA 135 (142)
T ss_dssp CGGGSSTTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred chHHHcCCCCceEEEEECCcEEEEEEeHHHHHHHHHHChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999888876
No 10
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.80 E-value=2.6e-19 Score=164.15 Aligned_cols=149 Identities=17% Similarity=0.182 Sum_probs=132.5
Q ss_pred HHHHHhhCCHHH----HHHHHHHHhHhhhcccccccCCCHHHHHHHHHHcccccccCCCeEEccCCccCeEEEEEeeEEE
Q 007326 365 EASVLQDIPISI----RAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLE 440 (608)
Q Consensus 365 ~~~~l~~lp~~l----~~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~ 440 (608)
+..+.+.+++.+ +.+...+...++++++|+|+.++++.++.++..++.+.|++|++|+++|++++.+|+|.+|.|+
T Consensus 13 ~~~~~~~~~~dli~~~~~~~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~ 92 (187)
T 3gyd_A 13 ENLYFQGMYPDLVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVN 92 (187)
T ss_dssp HHHHTSTTGGGCEEEEEGGGGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEE
T ss_pred cceeecCCchHHhccCccHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEE
Confidence 334444444443 2344455667899999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccCCcceeeEeeCCCCeecchhhhcCCCcccEEEEeeceeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007326 441 EVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513 (608)
Q Consensus 441 ~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~l~~ 513 (608)
++..+++|++.++..+++|++||+.+++.+.++.++++|.++|+++.+++++|.++++++|++...+++.+.+
T Consensus 93 v~~~~~~g~~~~~~~~~~G~~fGe~~~l~~~~~~~~v~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~ 165 (187)
T 3gyd_A 93 VIKDIPNKGIQTIAKVGAGAIIGEMSMIDGMPRSASCVASLPTDFAVLSRDALYQLLANMPKLGNKVLIRLLQ 165 (187)
T ss_dssp EEEEETTTEEEEEEEEETTCEESHHHHHHCCCCSSEEEEEEEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred EEEECCCCCeEEEEEccCCCeeeeHHHhCCCCeeEEEEECCCeEEEEEcHHHHHHHHHHChHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999988865544
No 11
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.79 E-value=1e-18 Score=153.96 Aligned_cols=129 Identities=19% Similarity=0.295 Sum_probs=123.3
Q ss_pred HhhhcccccccCCCHHHHHHHHHHcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecch
Q 007326 386 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV 465 (608)
Q Consensus 386 ~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~ 465 (608)
.++++++|+|..+++++++.++..++.+.|++|++|+++|++++.+|+|.+|.|+++..+.+|++.++..+++|++||+.
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~ 83 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENMLAVVGPSELIGEL 83 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEEEEEEECTTCEESGG
T ss_pred HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEEEEEEcCCcCEechH
Confidence 56789999999999999999999999999999999999999999999999999999998889999999999999999999
Q ss_pred hhhcCCCcccEEEEeeceeeEEechhhHHHHHHHhhhcHHHHHHHHhcc
Q 007326 466 SILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 514 (608)
Q Consensus 466 ~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~l~~~ 514 (608)
+++.+.++.++++|.++|+++.+++++|.++++++|.+...+++.+..+
T Consensus 84 ~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~~ 132 (149)
T 2pqq_A 84 SLFDPGPRTATGTALTEVKLLALGHGDLQPWLNVRPEVATALLRAVARR 132 (149)
T ss_dssp GGTSCEECSSEEEESSCEEEEEEEGGGHHHHHHHCTHHHHHHHHHHHHH
T ss_pred HhcCCCCcceEEEEccceEEEEEeHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988887763
No 12
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.79 E-value=3.1e-19 Score=159.59 Aligned_cols=129 Identities=22% Similarity=0.346 Sum_probs=119.3
Q ss_pred HHHHHhHhhhcccccccCCCHHHHHHHHHHcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCC
Q 007326 380 ISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPN 459 (608)
Q Consensus 380 i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G 459 (608)
.......++|+++|+|++++++.++.++..++.+.|++|++|+++|++++++|+|.+|.|+++. +.+|++.++..+++|
T Consensus 31 ~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~-~~~g~~~~~~~~~~G 109 (161)
T 3idb_B 31 DQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYV-KCDGVGRCVGNYDNR 109 (161)
T ss_dssp HHHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEE-EETTEEEEEEEEESC
T ss_pred HHHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEE-cCCCCeEEEEEcCCC
Confidence 3345567899999999999999999999999999999999999999999999999999999998 788999999999999
Q ss_pred CeecchhhhcCCCcccEEEEeeceeeEEechhhHHHHHHHhhhcHHHHHH
Q 007326 460 SSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLT 509 (608)
Q Consensus 460 ~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~ 509 (608)
++||+.+++.+.++.++++|.++|+++.+++++|.++++++|.+.++++.
T Consensus 110 ~~fGe~~~~~~~~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~ 159 (161)
T 3idb_B 110 GSFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYE 159 (161)
T ss_dssp CEECGGGGTCCCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHTSCCC--
T ss_pred CEechHHHHcCCCcccEEEECCCeEEEEEeHHHHHHHHHHCHHHHHHHHh
Confidence 99999999999999999999999999999999999999999987765543
No 13
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.78 E-value=1.8e-18 Score=153.27 Aligned_cols=130 Identities=14% Similarity=0.217 Sum_probs=119.3
Q ss_pred hHhhhcccccccCCCHHHHHHHHHHcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecc
Q 007326 385 YLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGE 464 (608)
Q Consensus 385 ~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe 464 (608)
..++++++++|..++++.++.++..++.+.|++|++|+++|++++.+|+|.+|.|+++..+.+|++.++..+++|++||+
T Consensus 10 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~ 89 (154)
T 2z69_A 10 HQQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAE 89 (154)
T ss_dssp HHHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----CCEEECTTEEESG
T ss_pred HHHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEEEEEccCCCeecc
Confidence 35679999999999999999999999999999999999999999999999999999998888899999999999999999
Q ss_pred hhhhcCCC-cccEEEEeeceeeEEechhhHHHHHHHhhhcHHHHHHHHhcc
Q 007326 465 VSILCNIP-QPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 514 (608)
Q Consensus 465 ~~~~~~~~-~~~~~~a~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~l~~~ 514 (608)
.+++.+.+ +.++++|.++|+++.+++++|.++++++|.+...+++.+.++
T Consensus 90 ~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~~~~r 140 (154)
T 2z69_A 90 AMMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTR 140 (154)
T ss_dssp GGGGSSCSBCSSEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhhccCCCCCceEEEEccceEEEEECHHHHHHHHHHChHHHHHHHHHHHHH
Confidence 99999988 999999999999999999999999999999999999888774
No 14
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.77 E-value=6.3e-19 Score=153.33 Aligned_cols=131 Identities=24% Similarity=0.265 Sum_probs=116.7
Q ss_pred hCCHHHHHHHHHHHhHhhhcccccccCCCHHHHHHHHHHcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcc
Q 007326 371 DIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTE 450 (608)
Q Consensus 371 ~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~ 450 (608)
++|..+|.+...+...++++++|+|+.++++.++.++..++.+.|++|++|+++|++++.+|+|.+|.|++.. +|
T Consensus 7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~---~g-- 81 (139)
T 3ocp_A 7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK---EG-- 81 (139)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEE---TT--
T ss_pred cCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEE---CC--
Confidence 5777778888888889999999999999999999999999999999999999999999999999999999965 45
Q ss_pred eeeEeeCCCCeecchhhhcCCCcccEEEEeeceeeEEechhhHHHHHHHhhhcHHH
Q 007326 451 DYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRK 506 (608)
Q Consensus 451 ~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~l~~~~~~~~~~ 506 (608)
..+..+.+|++||+.+++.+.++.++++|.++|+++.+++++|.++++++|...++
T Consensus 82 ~~~~~~~~G~~fGe~~~l~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~r~ 137 (139)
T 3ocp_A 82 VKLCTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHT 137 (139)
T ss_dssp EEEEEECTTCEESCHHHHHCCCCSSEEEESSCEEEEEEEHHHHHHHHTC-------
T ss_pred EEEEEeCCCCEeccHHHHCCCCcceEEEECcceEEEEEcHHHHHHHHhhChHhhhh
Confidence 37899999999999999999999999999999999999999999999999987654
No 15
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.75 E-value=7.6e-18 Score=155.56 Aligned_cols=129 Identities=19% Similarity=0.203 Sum_probs=121.5
Q ss_pred HhhhcccccccCCCHHHHHHHHHHcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecch
Q 007326 386 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV 465 (608)
Q Consensus 386 ~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~ 465 (608)
..+++.++.|.++++++++.+...++.+.|++|++|+++|++++.+|+|.+|.|+++..+.+|++.++..+.+|++||+.
T Consensus 6 ~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~~~~~~~g~~~ge~ 85 (194)
T 3dn7_A 6 TALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQTTQFAIENWWLSDY 85 (194)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEECCH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEEEEEEccCCcEEeeh
Confidence 45778899999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred -hhhcCCCcccEEEEeeceeeEEechhhHHHHHHHhhhcHHHHHHHHhcc
Q 007326 466 -SILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 514 (608)
Q Consensus 466 -~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~l~~~ 514 (608)
+++.+.|+.++++|.++|+++.+++++|.++++++|.+...+.+.+.++
T Consensus 86 ~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~ 135 (194)
T 3dn7_A 86 MAFQKQQPADFYIQSVENCELLSITYTEQENLFERIPALERYFRLVYQKS 135 (194)
T ss_dssp HHHHHTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCTTHHHHHHHHHHHH
T ss_pred HHHhcCCCCceEEEEECCEEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999999999999998887777663
No 16
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.75 E-value=9e-18 Score=157.95 Aligned_cols=126 Identities=21% Similarity=0.344 Sum_probs=118.9
Q ss_pred hcccccccCCCHHHHHHHHHHcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecchhhh
Q 007326 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSIL 468 (608)
Q Consensus 389 l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~ 468 (608)
|+++|+|+++++++++.+...++.+.|++|++|+++|++++++|+|.+|.|+++..+.+|++.++..+++|++||+.+++
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~ 80 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERTLALLGPGELFGEMSLL 80 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEEEEEECTTCEECHHHHH
T ss_pred CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEeehhhc
Confidence 46899999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred cCCCcccEEEEeeceeeEEechhhHHHHHHHhhhcHHHHHHHHhcc
Q 007326 469 CNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 514 (608)
Q Consensus 469 ~~~~~~~~~~a~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~l~~~ 514 (608)
.+.++.++++|.++|+++.+++++|.++++++|.+...+++.+..+
T Consensus 81 ~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~ 126 (216)
T 4ev0_A 81 DEGERSASAVAVEDTELLALFREDYLALIRRLPLVAHNLAALLARR 126 (216)
T ss_dssp HCCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CCCCcceEEEEcCCEEEEEEcHHHHHHHHHHCcHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999888877764
No 17
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.74 E-value=8.7e-18 Score=160.54 Aligned_cols=132 Identities=16% Similarity=0.222 Sum_probs=125.5
Q ss_pred HHhHhhhcccccccCCCHHHHHHHHHHcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCee
Q 007326 383 TLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 383 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
....++|+++|+|..+++++++.+...++.+.|++|++|+++|++++.+|+|.+|.|+++..+.+|++.++..+++|++|
T Consensus 7 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~ 86 (237)
T 3fx3_A 7 EAQKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAVVSVFTRGESF 86 (237)
T ss_dssp HHHHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEEEEEEETTEEE
T ss_pred HHHHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEeCCCCEe
Confidence 44567899999999999999999999999999999999999999999999999999999998999999999999999999
Q ss_pred cchhhhcCCCcccEEEEeeceeeEEechhhHHHHHHHhhhcHHHHHHHHhcc
Q 007326 463 GEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 514 (608)
Q Consensus 463 Ge~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~l~~~ 514 (608)
|+.+++.+.++.++++|.++|+++.+++++|.++++++|.+...+++.+..+
T Consensus 87 G~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~ 138 (237)
T 3fx3_A 87 GEAVALRNTPYPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICISILATTFGH 138 (237)
T ss_dssp CHHHHHHTCCCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred chHHHhcCCCCCceEEECCceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999888877764
No 18
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.73 E-value=1.1e-17 Score=159.13 Aligned_cols=130 Identities=18% Similarity=0.255 Sum_probs=122.3
Q ss_pred HhhhcccccccCCCHHHHHHHHHHcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecch
Q 007326 386 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV 465 (608)
Q Consensus 386 ~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~ 465 (608)
.++|+++|+|..+++++++.++..++.+.|++|++|+++|++++.+|+|.+|.|+++..+++|++.++..+++|++||+.
T Consensus 5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~ 84 (231)
T 3e97_A 5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERVLGDIYAPGVVGET 84 (231)
T ss_dssp HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEEEEEEESSEEESTT
T ss_pred HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceEEEEecCCCCEEeeH
Confidence 46789999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred hhhcCCCcccEEEEeeceeeEEechhhHHHHHHHhhhcHHHHHHHHhccc
Q 007326 466 SILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGK 515 (608)
Q Consensus 466 ~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~l~~~~ 515 (608)
+++.+.|+.++++|.++|+++.+++++|.++++.+|.+...+++.+.++.
T Consensus 85 ~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l 134 (231)
T 3e97_A 85 AVLAHQERSASVRALTPVRTLMLHREHFELILRRHPRVLWNLAEMLARRV 134 (231)
T ss_dssp TTTCCCCCCEEEEESSCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHhCCCCceEEEEECCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888877643
No 19
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.73 E-value=2e-17 Score=143.56 Aligned_cols=124 Identities=22% Similarity=0.314 Sum_probs=115.5
Q ss_pred hHhhhcccccccCCCHHHHHHHHHHcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecc
Q 007326 385 YLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGE 464 (608)
Q Consensus 385 ~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe 464 (608)
..++++++|+|+.+++++++.++..++.+.|++|++|+++|++++.+|+|.+|.|+++..+ ...+++|++||+
T Consensus 9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~-------~~~~~~G~~~G~ 81 (138)
T 1vp6_A 9 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN-------PVELGPGAFFGE 81 (138)
T ss_dssp HHHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS-------CEEECTTCEECH
T ss_pred HHHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC-------cceECCCCEeee
Confidence 4578999999999999999999999999999999999999999999999999999998632 247899999999
Q ss_pred hhhhcCCCcccEEEEeeceeeEEechhhHHHHHHHhhhcHHHHHHHHhccc
Q 007326 465 VSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGK 515 (608)
Q Consensus 465 ~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~l~~~~ 515 (608)
.+++.+.++.++++|.++|+++.+++++|.++++++|.+...+++.+.++.
T Consensus 82 ~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~r~ 132 (138)
T 1vp6_A 82 MALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALERR 132 (138)
T ss_dssp HHHHHCCCCSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHC
T ss_pred hHhccCCCceeEEEECCCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999998887754
No 20
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.72 E-value=1e-17 Score=140.03 Aligned_cols=56 Identities=20% Similarity=0.298 Sum_probs=53.5
Q ss_pred HHHHHHHHHhhhhcccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 007326 265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK 320 (608)
Q Consensus 265 ~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~ 320 (608)
+|.+|+||+++|+||+||||++|.|..+++++++++++|+.+++++++.+++.+.+
T Consensus 61 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~ 116 (122)
T 2ih3_C 61 TYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVG 116 (122)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47799999999999999999999999999999999999999999999999998865
No 21
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.72 E-value=8.2e-18 Score=159.55 Aligned_cols=129 Identities=20% Similarity=0.322 Sum_probs=123.3
Q ss_pred HhhhcccccccCCCHHHHHHHHHHcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecch
Q 007326 386 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV 465 (608)
Q Consensus 386 ~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~ 465 (608)
.+.++++|+|..+++++++.+...++.+.|++|++|+++|++++.+|+|.+|.|+++..+.+|++.++..+.+|++||+.
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~ 84 (227)
T 3d0s_A 5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGEL 84 (227)
T ss_dssp HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCH
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEEecCCCEEeeH
Confidence 56789999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred hhhcCCCcccEEEEeeceeeEEechhhHHHHHHHhhhcHHHHHHHHhcc
Q 007326 466 SILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 514 (608)
Q Consensus 466 ~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~l~~~ 514 (608)
+++.+.|+.++++|.++|+++.+++++|.++++++|.+...+++.+..+
T Consensus 85 ~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~ 133 (227)
T 3d0s_A 85 SIFDPGPRTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLARR 133 (227)
T ss_dssp HHHSCSCCSSEEEESSCEEEEEEEHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHcCCCCceeEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999888877764
No 22
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.72 E-value=3.1e-17 Score=154.72 Aligned_cols=128 Identities=15% Similarity=0.114 Sum_probs=121.2
Q ss_pred hhhcccccccCCCHHHHHHHHHHcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCe--ecc
Q 007326 387 PYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSS--FGE 464 (608)
Q Consensus 387 ~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~--fGe 464 (608)
++++++|+|..+++++++.+...++.+.|++|++|+++|++++.+|+|.+|.|+++..+++|++.++..+++|++ ||+
T Consensus 3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~~~g~ 82 (220)
T 3dv8_A 3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREITLYRLFDMDMCLLSA 82 (220)
T ss_dssp --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESGGG
T ss_pred chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEEEEEecCCCCeeehhH
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999999 799
Q ss_pred hhhhcCCCcccEEEEeeceeeEEechhhHHHHHHHhhhcHHHHHHHHhcc
Q 007326 465 VSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 514 (608)
Q Consensus 465 ~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~l~~~ 514 (608)
.+++.+.|+.++++|.++|+++.+++++|.++++++|.+...+++.+..+
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~l~~~ 132 (220)
T 3dv8_A 83 SCIMRSIQFEVTIEAEKDTDLWIIPAEIYKGIMKDSAPVANYTNELMATR 132 (220)
T ss_dssp GGGCTTCCCCCEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCceEEEEeeeeEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888777664
No 23
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.72 E-value=3.2e-17 Score=155.95 Aligned_cols=131 Identities=17% Similarity=0.137 Sum_probs=124.0
Q ss_pred HhHhhhcccccccCCCHHHHHHHHHH--cccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCe
Q 007326 384 LYLPYIEKVPLFKGCSSEFINQIVIR--LHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSS 461 (608)
Q Consensus 384 ~~~~~l~~~~~f~~l~~~~l~~l~~~--~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~ 461 (608)
.....++++|+|..+++++++.++.. ++.+.|++|++|+++|++++.+|+|.+|.|+++..+.+|++.++..+++|++
T Consensus 15 ~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~l~~~~~G~~ 94 (232)
T 1zyb_A 15 TMFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAPYL 94 (232)
T ss_dssp HHHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEEEEEEESSEE
T ss_pred HHHHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEEEEEEccCCCe
Confidence 34678999999999999999999998 9999999999999999999999999999999999889999999999999999
Q ss_pred ecchhhhcCCC-cccEEEEeeceeeEEechhhHHHHHHHhhhcHHHHHHHHhcc
Q 007326 462 FGEVSILCNIP-QPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 514 (608)
Q Consensus 462 fGe~~~~~~~~-~~~~~~a~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~l~~~ 514 (608)
||+.+++.+.+ +.++++|.++|+++.+++++|.++++++|++...+++.+..+
T Consensus 95 fG~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~ 148 (232)
T 1zyb_A 95 IEPQSLFGMNTNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNIVSNR 148 (232)
T ss_dssp ECGGGGSSSCCBCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHHHHHHHH
T ss_pred eeehHHhCCCCCCceEEEEccceEEEEEEHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 99999999988 899999999999999999999999999999999988887763
No 24
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.72 E-value=1.3e-17 Score=144.47 Aligned_cols=119 Identities=18% Similarity=0.346 Sum_probs=108.7
Q ss_pred HhhhcccccccCCCHHHHHHHHHHcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeE--eeCCCCeec
Q 007326 386 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVS--YLHPNSSFG 463 (608)
Q Consensus 386 ~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~--~l~~G~~fG 463 (608)
.++++++|+|+.+++++++.++..++.+.|++|++|+++|++++.+|+|.+|.|++. .+.+|++.++. .+.+|++||
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~-~~~~g~~~~~~~~~l~~G~~fG 83 (137)
T 1wgp_A 5 SSGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESV-TTDGGRSGFYNRSLLKEGDFCG 83 (137)
T ss_dssp SCSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEE-CCSSCSSSSSCEEECCTTCBSS
T ss_pred HHHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE-EcCCCcceeeeeeeecCCCEec
Confidence 357899999999999999999999999999999999999999999999999999965 56788887777 999999999
Q ss_pred chhh---hcCCC------cccEEEEeeceeeEEechhhHHHHHHHhhhcHH
Q 007326 464 EVSI---LCNIP------QPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGR 505 (608)
Q Consensus 464 e~~~---~~~~~------~~~~~~a~~~~~l~~l~~~~~~~l~~~~~~~~~ 505 (608)
+.++ +.+.+ +.++++|.++|+++.|++++|.++++++|++..
T Consensus 84 e~~l~~~~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~ 134 (137)
T 1wgp_A 84 DELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRRSGP 134 (137)
T ss_dssp THHHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCCCTT
T ss_pred HHHHHHHhccccccccccceeEEEEeEEEEEEEECHHHHHHHHHHCHhhHh
Confidence 9995 77775 578999999999999999999999999998653
No 25
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.71 E-value=2.4e-17 Score=140.68 Aligned_cols=92 Identities=18% Similarity=0.290 Sum_probs=54.9
Q ss_pred HHHHHHHHHhhhhcccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHH-HHhCCC
Q 007326 265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLMKY-INRNRL 343 (608)
Q Consensus 265 ~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~~-m~~~~l 343 (608)
.|.+|+||+++|+|||||||++|.|..|++++++++++|+++++++++.+++.+.+....++.+++.+...+. .+..++
T Consensus 43 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 122 (137)
T 4h33_A 43 NYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKKPTNSSTQRANKITQLISETPDL 122 (137)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTC--------------------
T ss_pred CHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 3779999999999999999999999999999999999999999999999999887643333333333333333 333456
Q ss_pred CHHHHHHHHHHHH
Q 007326 344 GRDIRDQIIGHLR 356 (608)
Q Consensus 344 ~~~l~~~v~~y~~ 356 (608)
+++.+..++++++
T Consensus 123 ~~~~i~~l~~~l~ 135 (137)
T 4h33_A 123 TKEEIAVVEQFLT 135 (137)
T ss_dssp -------------
T ss_pred cHHHHHHHHHHHh
Confidence 6666666666554
No 26
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.71 E-value=1.4e-17 Score=157.95 Aligned_cols=130 Identities=14% Similarity=0.217 Sum_probs=123.8
Q ss_pred hHhhhcccccccCCCHHHHHHHHHHcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecc
Q 007326 385 YLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGE 464 (608)
Q Consensus 385 ~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe 464 (608)
..++++++|+|+.+++++++.+...++.+.|++|++|+++|++++++|+|.+|.|+++..+.+|++.++..+++|++||+
T Consensus 7 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~ 86 (227)
T 3dkw_A 7 HQQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAE 86 (227)
T ss_dssp SHHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBCCCEECTTEEESC
T ss_pred HHHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeee
Confidence 35688999999999999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred hhhhcCCC-cccEEEEeeceeeEEechhhHHHHHHHhhhcHHHHHHHHhcc
Q 007326 465 VSILCNIP-QPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 514 (608)
Q Consensus 465 ~~~~~~~~-~~~~~~a~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~l~~~ 514 (608)
.+++.+.| +.++++|.++|+++.+++++|.++++++|.+...+++.+..+
T Consensus 87 ~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~ 137 (227)
T 3dkw_A 87 AMMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTR 137 (227)
T ss_dssp TTTTTTCSBCSSCEEESSCCEEEEEESHHHHHHHSSCTHHHHHHHHHHHHH
T ss_pred HHhcCCCCCCceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 99999999 999999999999999999999999999999999888888764
No 27
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.70 E-value=9.1e-17 Score=142.24 Aligned_cols=120 Identities=23% Similarity=0.361 Sum_probs=109.3
Q ss_pred HHhHhhhcccccccCCCHHHHHHHHHHcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCee
Q 007326 383 TLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 383 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
....++++++|+|..++++.++.++..++.+.|++|++|+++|++++.+|+|.+|.|+++. +|+ .+..+.+|++|
T Consensus 34 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~---~~~--~~~~~~~G~~f 108 (154)
T 3pna_A 34 AALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV---NNE--WATSVGEGGSF 108 (154)
T ss_dssp HHHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEE---TTE--EEEEECTTCEE
T ss_pred HHHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEE---CCE--EEEEecCCCEe
Confidence 3456789999999999999999999999999999999999999999999999999999987 443 67889999999
Q ss_pred cchhhhcCCCcccEEEEeeceeeEEechhhHHHHHHHhhhcHHHH
Q 007326 463 GEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKV 507 (608)
Q Consensus 463 Ge~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~l~~~~~~~~~~~ 507 (608)
|+.+++.+.++.++++|.++|+++.+++++|.++++++|...+++
T Consensus 109 Ge~~~~~~~~~~~~v~A~~~~~~~~i~~~~~~~ll~~~~~~~~~~ 153 (154)
T 3pna_A 109 GELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKM 153 (154)
T ss_dssp CCHHHHHCCCCSSEEEESSCEEEEEEEHHHHHHHTHHHHHHC---
T ss_pred eehHhhcCCCcceEEEECcceEEEEEeHHHHHHHHHhChHHHhhc
Confidence 999999999999999999999999999999999999998766543
No 28
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.70 E-value=9.1e-17 Score=152.64 Aligned_cols=129 Identities=12% Similarity=0.194 Sum_probs=111.5
Q ss_pred HhhhcccccccCCCHHHHHHHHHHcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecch
Q 007326 386 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV 465 (608)
Q Consensus 386 ~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~ 465 (608)
...+++.++|..+++++++.+...++.+.|++|++|+++|++++.+|+|.+|.|+++..+++|++.++..+++|++||+.
T Consensus 10 ~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~ 89 (230)
T 3iwz_A 10 TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELVLGYFGSGEFVGEM 89 (230)
T ss_dssp ------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCG
T ss_pred hhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEEeh
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCC-CcccEEEEeeceeeEEechhhHHHHHHHh-----hhcHHHHHHHHhcc
Q 007326 466 SILCNI-PQPYTVQVCELCRLLRIDKQSFTNIIDIY-----FCDGRKVLTNLLQG 514 (608)
Q Consensus 466 ~~~~~~-~~~~~~~a~~~~~l~~l~~~~~~~l~~~~-----~~~~~~~~~~l~~~ 514 (608)
+++.+. |+.++++|.++|+++.+++++|.++++++ |++...+++.+..+
T Consensus 90 ~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p~~~~~~~~~l~~~ 144 (230)
T 3iwz_A 90 GLFIESDTREVILRTRTQCELAEISYERLQQLFQTSLSPDAPRILYAIGVQLSKR 144 (230)
T ss_dssp GGTSCCSBCCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHHHHHHHHHHHHHHH
T ss_pred hhhcCCCCceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCcHHHHHHHHHHHHH
Confidence 999875 78999999999999999999999999999 99988888877764
No 29
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.70 E-value=5.8e-17 Score=154.23 Aligned_cols=125 Identities=13% Similarity=0.130 Sum_probs=115.1
Q ss_pred cccccccCCCHHHHHHHHHHcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecchhhhc
Q 007326 390 EKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILC 469 (608)
Q Consensus 390 ~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~ 469 (608)
.++|+|..+++++++.+...++.+.|++|++|+++|++++.+|+|.+|.|+++..+.+|++.++..+++|++||+.+++.
T Consensus 13 ~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~ 92 (232)
T 2gau_A 13 LLRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFGMRPYFA 92 (232)
T ss_dssp GSHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCEEEEECTTCEESHHHHHH
T ss_pred cccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEeCCCCEeeeehhhC
Confidence 36899999999999999999999999999999999999999999999999999988899999999999999999999999
Q ss_pred CCCcccEEEEeeceeeEEechhhHHHHHHHhhhcHHHHHHHHhcc
Q 007326 470 NIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 514 (608)
Q Consensus 470 ~~~~~~~~~a~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~l~~~ 514 (608)
+.|+.++++|.++|+++.+++++|.++++++|.+...+++.+.++
T Consensus 93 ~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~ 137 (232)
T 2gau_A 93 EETCSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKALAKE 137 (232)
T ss_dssp TSCCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CCCcceEEEEecceEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998887764
No 30
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.69 E-value=1.4e-16 Score=160.33 Aligned_cols=128 Identities=17% Similarity=0.297 Sum_probs=121.5
Q ss_pred hHhhhcccccccCCCHHHHHHHHHHcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecc
Q 007326 385 YLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGE 464 (608)
Q Consensus 385 ~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe 464 (608)
..+.|+++|+|+.+++++++.++..++.+.|++|++|+++|++++++|+|.+|.|+++..+.+|++ ++..+.+|++||+
T Consensus 11 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~-~~~~~~~G~~fGe 89 (333)
T 4ava_A 11 RVEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVA-IIARALPGMIVGE 89 (333)
T ss_dssp CHHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCE-EEEEECTTCEESH
T ss_pred hHHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcE-EEEEecCCCEeeH
Confidence 347889999999999999999999999999999999999999999999999999999998888887 8899999999999
Q ss_pred hhhhcCCCcccEEEEeeceeeEEechhhHHHHHHHhhhcHHHHHHHHhcc
Q 007326 465 VSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 514 (608)
Q Consensus 465 ~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~l~~~ 514 (608)
.+++.+.|+.++++|.++|+++.|++++|.+++ ++|.+...+++.+.++
T Consensus 90 ~~l~~~~~~~~~v~A~~~~~~~~i~~~~~~~l~-~~p~~~~~~~~~~~~~ 138 (333)
T 4ava_A 90 IALLRDSPRSATVTTIEPLTGWTGGRGAFATMV-HIPGVGERLLRTARQR 138 (333)
T ss_dssp HHHHHTCBCSSEEEESSCEEEEEECHHHHHHHH-HSTTHHHHHHHHHHHH
T ss_pred HHhcCCCCceEEEEEecCEEEEEEcHHHHHHHH-hChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999 9999999998887764
No 31
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=99.69 E-value=6.2e-18 Score=165.64 Aligned_cols=201 Identities=15% Similarity=0.181 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhee--ccCCCcCeehHHHHHHHHHHHHHHhhceeeEEeCCCcEEeeccHHHHHHHhhc-c
Q 007326 75 AWTKFILIWAVYSSIFTPVEFGF--FRGLSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRS-S 151 (608)
Q Consensus 75 ~w~~~~~~~~~~~~~~~p~~~~f--~~~~~~~~~~~~~~~~~if~~d~~l~f~t~~~~~~~~~~i~~~~~i~~~y~~~-~ 151 (608)
.++.+++++++.+++...+...- .......+..+|.++.++|++|+++|++.+ + ++|+++ |
T Consensus 31 ~f~~~i~~li~l~~i~~~~~~~~~~~~~~~~~l~~~e~~~~~iF~~E~~lrl~~~------------~----~~y~~~~w 94 (285)
T 3rvy_A 31 FFTKFIIYLIVLNGITMGLETSKTFMQSFGVYTTLFNQIVITIFTIEIILRIYVH------------R----ISFFKDPW 94 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCTTHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTT------------G----GGGGGCHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------h----HHHHcCCh
Confidence 56667777777777766554321 111223467899999999999999997753 2 679998 4
Q ss_pred chhHHHhhccHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007326 152 FIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFFHKMEKDIR-INYMFSRIVKLIAVELYCSHIAACIFYYL 230 (608)
Q Consensus 152 f~iDll~~lP~~~~~~~~~~~~~~~~l~llrl~rl~r~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~h~~ac~~~~~ 230 (608)
-++|+++++|..+.. .+ .++.+|++|++|++|+.++...++.... +......+..+++.++++..++|++-+.+
T Consensus 95 n~~Dl~~v~~~~i~~--~~---~~~~lr~~RilR~lrl~~~~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~fa~~g~~~ 169 (285)
T 3rvy_A 95 SLFDFFVVAISLVPT--SS---GFEILRVLRVLRLFRLVTAVPQMRKIVSALISVIPGMLSVIALMTLFFYIFAIMATQL 169 (285)
T ss_dssp HHHHHHHHHHHHSCS--SS---SCTHHHHHGGGGGGHHHHSSTTHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHcc--cc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 599999999875432 11 2456677777777777776665554322 11222234555555555555666665555
Q ss_pred hhcCCCCCCCcccccccccCCCCcccccccchHHHHHHHHHHHhhhhcccccC-Ccc-cCChhh----HHHHHHHHHHHH
Q 007326 231 ATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYG-DVH-AVNLRE----MVFIMIYVSFDM 304 (608)
Q Consensus 231 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~y~~~~t~ttvGyg-di~-p~~~~e----~~~~~~~~~~g~ 304 (608)
..... .+.+.++.+|+||++.|+||+||| |+. |.+..+ +.+++++++.|+
T Consensus 170 f~~~~------------------------~~~F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~ 225 (285)
T 3rvy_A 170 FGERF------------------------PEWFGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTF 225 (285)
T ss_dssp HTTTC------------------------HHHHSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHH
T ss_pred hCccc------------------------ccccCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHH
Confidence 43211 012456779999999999999999 985 776544 889999999999
Q ss_pred HHHHHHHHHHHHHHHc
Q 007326 305 ILGAYLIGNMTALIVK 320 (608)
Q Consensus 305 ~~~a~~i~~i~~~~~~ 320 (608)
++.+.++|.+.+.+.+
T Consensus 226 ~~lnl~~aii~~~f~~ 241 (285)
T 3rvy_A 226 VMINLVVAICVDAMAI 241 (285)
T ss_dssp HHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999887765
No 32
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.68 E-value=2.3e-16 Score=156.22 Aligned_cols=142 Identities=23% Similarity=0.243 Sum_probs=129.5
Q ss_pred HHhhCCHHHHHHHHHHHhHhhhcccccccCCCHHHHHHHHHHcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccC
Q 007326 368 VLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEEN 447 (608)
Q Consensus 368 ~l~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~ 447 (608)
...++|...|.+...+...+.++++++|+.+++++++.++..++.+.|++|++|+++|+.++.+|+|.+|.|++.. +
T Consensus 20 ~~~~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~---~ 96 (299)
T 3shr_A 20 SMQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK---E 96 (299)
T ss_dssp --CCCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEE---T
T ss_pred ccCCCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEE---C
Confidence 4558898889888889999999999999999999999999999999999999999999999999999999999965 4
Q ss_pred CcceeeEeeCCCCeecchhhhcCCCcccEEEEeeceeeEEechhhHHHHHHHhhhcHHHHHHHHhcc
Q 007326 448 GTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 514 (608)
Q Consensus 448 g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~l~~~ 514 (608)
| ..+..+.+|++||+.+++.+.|+.++++|.++|+++.|++++|.+++..+|.........+++.
T Consensus 97 g--~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~~~~~~~~~~l~~ 161 (299)
T 3shr_A 97 G--VKLCTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTEYMEFLKS 161 (299)
T ss_dssp T--EEEEEECTTCEESCSGGGTTTBCCSEEEESSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred C--EEEEEeCCCCeeeHhHHhcCCCCCcEEEEcCCeEEEEEcHHHHHHHhhHhHHHHHHHHHHHHhh
Confidence 4 4788999999999999999999999999999999999999999999999998777666666654
No 33
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.67 E-value=5e-16 Score=135.03 Aligned_cols=112 Identities=19% Similarity=0.272 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccCCCCcccccccchHHHHHHHHHHHhhhhcccccCCcccC
Q 007326 209 IVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAV 288 (608)
Q Consensus 209 ~~~l~~~~~~~~h~~ac~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~y~~~~t~ttvGygdi~p~ 288 (608)
.+.+++.++++.+++++++|..... | .|.+|+||+++|+|||||||++|.
T Consensus 26 ~~~~~~~~~~~~~~~g~~~~~~~e~---------~---------------------~~~~a~y~~~~t~tTvGyGd~~p~ 75 (148)
T 3vou_A 26 EFQVLFVLTFLTLTSGTIFYSTVEG---------L---------------------RPLDALYFSVVTLTTVGDGNFSPQ 75 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSC---------C---------------------CHHHHHHHHHHHHTTCCCSSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC---------C---------------------CHHHHHHHHHHHHHccCCCCCCCC
Confidence 3445555666677778887764321 1 367999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHc-----CchhHHHHHHHHHHHHHHHhCCCCHHHHHH
Q 007326 289 NLREMVFIMIYVSFDMILGAYLIGNMTA------LIVK-----GSKTEKFRDKMTDLMKYINRNRLGRDIRDQ 350 (608)
Q Consensus 289 ~~~e~~~~~~~~~~g~~~~a~~i~~i~~------~~~~-----~~~~~~~~~~~~~~~~~m~~~~l~~~l~~~ 350 (608)
|..+++++++++++|+.++++.++.++. +... .....+..++++++++++++++.|++|+.|
T Consensus 76 t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~i~~~~~~~~~~~~L~~R 148 (148)
T 3vou_A 76 TDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLEAIEKKLAEHSRQGSLVPR 148 (148)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC------
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCC
Confidence 9999999999999999999999999876 2222 122345667788999999999999999875
No 34
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.67 E-value=1.2e-16 Score=158.36 Aligned_cols=134 Identities=22% Similarity=0.326 Sum_probs=125.8
Q ss_pred HHhHhhhcccccccCCCHHHHHHHHHHcccccccCCCeEEccCCccCeEEEEEeeEEEEEEec-cCCcceeeEeeCCCCe
Q 007326 383 TLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIE-ENGTEDYVSYLHPNSS 461 (608)
Q Consensus 383 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~-~~g~~~~~~~l~~G~~ 461 (608)
.....+++++|+|..++++.+..++..++.+.|.+|++|+++|++++.+|+|.+|.|+++..+ .+|++..+..+++|++
T Consensus 153 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~~~~l~~G~~ 232 (299)
T 3shr_A 153 TEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVFLRTLGKGDW 232 (299)
T ss_dssp HHHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEEEEEEETTCE
T ss_pred HHHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceEEEEcCCCCE
Confidence 345678889999999999999999999999999999999999999999999999999999876 6888889999999999
Q ss_pred ecchhhhcCCCcccEEEEeeceeeEEechhhHHHHHHHhhhcHHHHHHHHhcccc
Q 007326 462 FGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGKE 516 (608)
Q Consensus 462 fGe~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~l~~~~~ 516 (608)
||+.+++.+.|+.++++|.++|+++.|++++|.+++..+|++...+++.+.++..
T Consensus 233 fGe~~ll~~~~~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~r~~ 287 (299)
T 3shr_A 233 FGEKALQGEDVRTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKAYEDAEAKAK 287 (299)
T ss_dssp ECGGGGSSSEECSSEEEESSSEEEEEEEHHHHHHHHTTCCCCCHHHHHHHHHHHH
T ss_pred eChHHHhCCCCcceEEEECCCEEEEEEeHHHHHHHHccHHHHHHHHHHHHhhhhh
Confidence 9999999999999999999999999999999999999999999999999988543
No 35
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.67 E-value=3.7e-16 Score=146.17 Aligned_cols=122 Identities=16% Similarity=0.260 Sum_probs=112.4
Q ss_pred ccccCCCHHHHHHHHHHcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecchhhhcCC-
Q 007326 393 PLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNI- 471 (608)
Q Consensus 393 ~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~- 471 (608)
++++.+++++++.+...++.+.|++|++|+++|++++++|+|.+|.|+++..+.+|++.++..+++|++||+.+++.+.
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~ 81 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQ 81 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTTC
T ss_pred cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeHHHhcCCC
Confidence 4667899999999999999999999999999999999999999999999998899999999999999999999999888
Q ss_pred CcccEEEEeeceeeEEechhhHHHHHHHhhhcHHHHHHHHhcc
Q 007326 472 PQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 514 (608)
Q Consensus 472 ~~~~~~~a~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~l~~~ 514 (608)
++.++++|.++|+++.+++++|.++++++|++...+++.+..+
T Consensus 82 ~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~ 124 (210)
T 3ryp_A 82 ERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARR 124 (210)
T ss_dssp BCSSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHH
T ss_pred CceEEEEECCcEEEEEEcHHHHHHHHHHChHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999888887764
No 36
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.65 E-value=8.4e-16 Score=143.34 Aligned_cols=117 Identities=15% Similarity=0.259 Sum_probs=109.7
Q ss_pred CCHHHHHHHHHHcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecchhhhcCC----Cc
Q 007326 398 CSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNI----PQ 473 (608)
Q Consensus 398 l~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~----~~ 473 (608)
|++++++.+...++.+.|++|++|+++|++++.+|+|.+|.|+++..+.+|++.++..+++|++||+.+++.+. |+
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~~~~~~~~~~ 80 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKEGSEQER 80 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEESCTTTCC-----CBC
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCCcccHHHhcCCCCCCCc
Confidence 58899999999999999999999999999999999999999999998899999999999999999999999888 89
Q ss_pred ccEEEEeeceeeEEechhhHHHHHHHhhhcHHHHHHHHhcc
Q 007326 474 PYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 514 (608)
Q Consensus 474 ~~~~~a~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~l~~~ 514 (608)
.++++|.++|+++.+++++|.++++++|.+...+++.+.++
T Consensus 81 ~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~ 121 (207)
T 2oz6_A 81 SAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMADR 121 (207)
T ss_dssp CSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred ceEEEECCcEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888877763
No 37
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.64 E-value=4.1e-17 Score=140.81 Aligned_cols=116 Identities=20% Similarity=0.293 Sum_probs=105.2
Q ss_pred HHHhHhhhcccccccCCCHHHHHHHHHHccccccc-CCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCC
Q 007326 382 QTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFL-PGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNS 460 (608)
Q Consensus 382 ~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~-~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~ 460 (608)
.....++++++++|..++++.++.++..++.+.|. +|++|+++|+.++.+|+|.+|.|+++. .+|++ ..+.+|+
T Consensus 11 ~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~--~~g~~---~~l~~G~ 85 (134)
T 2d93_A 11 IEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISH--PDGKV---ENLFMGN 85 (134)
T ss_dssp HHHHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEEC--SSSCE---EEECTTC
T ss_pred HHHHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEc--CCCcE---EEecCCC
Confidence 34456778999999999999999999999999999 999999999999999999999999985 56655 5689999
Q ss_pred eecchhhhcCCCcccEE-EEeeceeeEEechhhHHHHHHHhhh
Q 007326 461 SFGEVSILCNIPQPYTV-QVCELCRLLRIDKQSFTNIIDIYFC 502 (608)
Q Consensus 461 ~fGe~~~~~~~~~~~~~-~a~~~~~l~~l~~~~~~~l~~~~~~ 502 (608)
+||+.+++.+.++.+++ +|.++|+++.+++++|.++++++++
T Consensus 86 ~fG~~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~ 128 (134)
T 2d93_A 86 SFGITPTLDKQYMHGIVRTKVDDCQFVCIAQQDYWRILNHVEK 128 (134)
T ss_dssp EESCCSSSCCEECCSEEEESSSSEEEEEEEHHHHHHHSSCCSS
T ss_pred ccChhHhcCCCcceeEEEEEecceEEEEEeHHHHHHHHHHHHh
Confidence 99999999999998898 9999999999999999998877654
No 38
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.63 E-value=7e-16 Score=132.78 Aligned_cols=89 Identities=17% Similarity=0.175 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccCCCCcccccccchHHHHHHHHHHHhhhhcccccCCccc
Q 007326 208 RIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHA 287 (608)
Q Consensus 208 ~~~~l~~~~~~~~h~~ac~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~y~~~~t~ttvGygdi~p 287 (608)
.++..++.+++++++.++++|.++...+++ ....|.+|+||+++|+|||||||++|
T Consensus 7 ~~~~~~~~~~~~~~~~a~~~~~~e~~~~~~------------------------~~~~~~~a~yf~~~T~tTvGyGd~~P 62 (139)
T 3eff_K 7 AAGAATVLLVIVLLAGSYLAVLAERGAPGA------------------------QLITYPRALWWSVETATTVGYGDLYP 62 (139)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTTSSCTTC------------------------CCCCHHHHHHHHHHHHTTCCCSSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCc------------------------ccCCHHHHHHHHheeeecccCCCCcC
Confidence 345555666667777888887766432111 11247799999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 007326 288 VNLREMVFIMIYVSFDMILGAYLIGNMTALIVK 320 (608)
Q Consensus 288 ~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~ 320 (608)
.|..+++++++++++|+++++++++.+++.+.+
T Consensus 63 ~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~ 95 (139)
T 3eff_K 63 VTLWGRLVAVVVMVAGITSFGLVTAALATWFVG 95 (139)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTH
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999887754
No 39
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.63 E-value=6e-16 Score=159.74 Aligned_cols=132 Identities=21% Similarity=0.367 Sum_probs=120.7
Q ss_pred HHHHhHhhhcccccccCCCHHHHHHHHHHcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCC
Q 007326 381 SQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNS 460 (608)
Q Consensus 381 ~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~ 460 (608)
......+.++++++|+.++++++..++..++.+.|++|++|+++|+.++.+|+|.+|.|+++. +.+|++..+..+.+|+
T Consensus 139 ~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~-~~~G~~~~v~~l~~G~ 217 (416)
T 3tnp_B 139 QRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYV-KCDGVGRCVGNYDNRG 217 (416)
T ss_dssp HHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEE-ECSSCEEEEEEEESCC
T ss_pred HHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEE-ecCCCEEEEEEecCCC
Confidence 345667889999999999999999999999999999999999999999999999999999998 6788888999999999
Q ss_pred eecchhhhcCCCcccEEEEeeceeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007326 461 SFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513 (608)
Q Consensus 461 ~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~l~~ 513 (608)
+||+.+++.+.|+.++++|.++|+++.|++++|.+++..+|.....++..+++
T Consensus 218 ~fGe~all~~~pr~atv~A~~d~~l~~i~r~~f~~ll~~~~~~~~~~~~~~L~ 270 (416)
T 3tnp_B 218 SFGELALMYNTPKAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYESFIE 270 (416)
T ss_dssp EECGGGGTSCCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHSSSSSSSGG
T ss_pred EEeeHHHhcCCCcccEEEEccCeEEEEEeehhhhhhhhcchhHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999998776554444443
No 40
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.62 E-value=2.8e-15 Score=147.83 Aligned_cols=129 Identities=18% Similarity=0.255 Sum_probs=117.0
Q ss_pred HhHhhhcccccccCCCHHHHHHHHHHcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCC-cceeeEeeCCCCee
Q 007326 384 LYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG-TEDYVSYLHPNSSF 462 (608)
Q Consensus 384 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g-~~~~~~~l~~G~~f 462 (608)
....+++++++|..+++..+..++..++...|.+|++|+++|++++.+|+|.+|.|+++....+| ++..+..+++|++|
T Consensus 154 ~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~~l~~G~~f 233 (291)
T 2qcs_B 154 MYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYF 233 (291)
T ss_dssp HHHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEEEEEEECTTCEE
T ss_pred HHHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccEEEEEeCCCCEe
Confidence 34567788999999999999999999999999999999999999999999999999999866665 45689999999999
Q ss_pred cchhhhcCCCcccEEEEeeceeeEEechhhHHHHHHHhhhcHHHHHHHHh
Q 007326 463 GEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLL 512 (608)
Q Consensus 463 Ge~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~l~ 512 (608)
||.+++.+.|+.++++|.++|+++.|++++|.+++..+|++....++.+.
T Consensus 234 Ge~~ll~~~~~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~~~~~~ 283 (291)
T 2qcs_B 234 GEIALLMNRPKAATVVARGPLKCVKLDRPRFERVLGPCSDILKRNIQQYN 283 (291)
T ss_dssp CSGGGTCCCCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTTSHHHHH
T ss_pred cHHHHcCCCCcceEEEECCcEEEEEEcHHHHHHHhccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987766665554
No 41
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.62 E-value=6.2e-16 Score=144.91 Aligned_cols=125 Identities=14% Similarity=0.140 Sum_probs=109.6
Q ss_pred ccccccCCCHHHHHHHHHHcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecchhhhcC
Q 007326 391 KVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCN 470 (608)
Q Consensus 391 ~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~ 470 (608)
.-|+|...++...+.+...++.+.|++|++|+++|++++.+|+|.+|.|+++..+.+|++.++..+++|++||+.+++.+
T Consensus 3 ~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~~~~~~ 82 (213)
T 1o5l_A 3 SDKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFIFSS 82 (213)
T ss_dssp ----------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEEEEEECSSEESSGGGTTSS
T ss_pred ccccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEecCCCEeeeHHHhcC
Confidence 35788899999999999999999999999999999999999999999999999889999999999999999999999887
Q ss_pred C-CcccEEEEeeceeeEEechhhHHHHHHHhhhcHHHHHHHHhccc
Q 007326 471 I-PQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGK 515 (608)
Q Consensus 471 ~-~~~~~~~a~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~l~~~~ 515 (608)
. ++.+++.|.++|+++.+++++|.++++++|.+...+++.+.++.
T Consensus 83 ~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~~ 128 (213)
T 1o5l_A 83 EPRFPVNVVAGENSKILSIPKEVFLDLLMKDRELLLFFLKDVSEHF 128 (213)
T ss_dssp SCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEEccceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 6 89999999999999999999999999999999999988887743
No 42
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.61 E-value=1.3e-15 Score=161.03 Aligned_cols=142 Identities=20% Similarity=0.224 Sum_probs=129.3
Q ss_pred CCHHHHHHHHHHHhHhhhcccccccCCCHHHHHHHHHHcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCc--
Q 007326 372 IPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGT-- 449 (608)
Q Consensus 372 lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~-- 449 (608)
.|+..|.+...+...+.++++++|+.+++++++.++..++.+.|++|++|+++||+++.+|+|.+|.|+++..+.+|+
T Consensus 27 ~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g~~~ 106 (469)
T 1o7f_A 27 KRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQD 106 (469)
T ss_dssp SCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGGG
T ss_pred CChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCCCCc
Confidence 455566666667778899999999999999999999999999999999999999999999999999999999888886
Q ss_pred ceeeEeeCCCCeecchhhhcCCCcccEEEEeeceeeEEechhhHHHHHHHhhhcHHHHHHHHhcc
Q 007326 450 EDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 514 (608)
Q Consensus 450 ~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~l~~~ 514 (608)
+.++..+++|++||+.+ +.+.++.++++|.++|+++.+++++|.++++++|.+...+++.+..+
T Consensus 107 ~~~~~~~~~G~~fGe~~-l~~~~~~~tv~A~~~~~l~~i~~~~~~~l~~~~p~~~~~l~~~~~~~ 170 (469)
T 1o7f_A 107 AVTICTLGIGTAFGESI-LDNTPRHATIVTRESSELLRIEQEDFKALWEKYRQYMAGLLAPPYGV 170 (469)
T ss_dssp CEEEEEECTTCEECGGG-GGTCBCSSEEEESSSEEEEEEEHHHHHHHHHHHGGGTTTTSCTTTSC
T ss_pred ceEEEEccCCCCcchhh-hCCCCccceEEEccceeEEEEcHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 47899999999999999 99999999999999999999999999999999999887776655554
No 43
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.61 E-value=2.6e-15 Score=145.27 Aligned_cols=119 Identities=16% Similarity=0.274 Sum_probs=110.4
Q ss_pred cCCCHHHHHHHHHHcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecchhhhcCC-Ccc
Q 007326 396 KGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNI-PQP 474 (608)
Q Consensus 396 ~~l~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~-~~~ 474 (608)
..+++++++.+...++.+.|++|++|+++|++++.+|+|.+|.|+++..+.+|++.++..+++|++||+.+++.+. ++.
T Consensus 55 ~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~~~G~~~Ge~~~~~~~~~~~ 134 (260)
T 3kcc_A 55 KPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERS 134 (260)
T ss_dssp ----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTTCBCC
T ss_pred CCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehHHhCCCCCCc
Confidence 4589999999999999999999999999999999999999999999998899999999999999999999999988 899
Q ss_pred cEEEEeeceeeEEechhhHHHHHHHhhhcHHHHHHHHhcc
Q 007326 475 YTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 514 (608)
Q Consensus 475 ~~~~a~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~l~~~ 514 (608)
++++|.++|+++.+++++|.++++++|.+...+++.+..+
T Consensus 135 ~~~~A~~~~~l~~i~~~~~~~l~~~~p~l~~~l~~~l~~~ 174 (260)
T 3kcc_A 135 AWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARR 174 (260)
T ss_dssp SEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHH
T ss_pred eEEEECCCeEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888877764
No 44
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.61 E-value=5.8e-15 Score=145.52 Aligned_cols=129 Identities=22% Similarity=0.351 Sum_probs=119.2
Q ss_pred HHHhHhhhcccccccCCCHHHHHHHHHHcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCe
Q 007326 382 QTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSS 461 (608)
Q Consensus 382 ~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~ 461 (608)
.....+.|+++|+|+.++++++..++..++.+.|++|++|+++|++++.+|+|.+|.|+++. +| ..+..+.+|++
T Consensus 34 ~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~---~g--~~~~~l~~G~~ 108 (291)
T 2qcs_B 34 MAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV---NN--EWATSVGEGGS 108 (291)
T ss_dssp HHHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEE---TT--EEEEEECTTCE
T ss_pred HHHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEE---CC--eEEEEcCCCCc
Confidence 34567889999999999999999999999999999999999999999999999999999987 45 46899999999
Q ss_pred ecchhhhcCCCcccEEEEeeceeeEEechhhHHHHHHHhhhcHHHHHHHHhccc
Q 007326 462 FGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGK 515 (608)
Q Consensus 462 fGe~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~l~~~~ 515 (608)
||+.+++.+.|+.++++|.++|+++.+++++|.+++..+|.....++..++++.
T Consensus 109 fGe~~l~~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (291)
T 2qcs_B 109 FGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKV 162 (291)
T ss_dssp ECGGGGTCCCBCSSEEEESSCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cchHHHhcCCCCceEEEECCCEEEEEEEhHHHHHHHhhhHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999888887776653
No 45
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.61 E-value=7.4e-16 Score=145.23 Aligned_cols=121 Identities=14% Similarity=0.142 Sum_probs=114.0
Q ss_pred HhhhcccccccCCCHHHHHHHHHHcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecch
Q 007326 386 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV 465 (608)
Q Consensus 386 ~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~ 465 (608)
..+++++|+|..+++++++.+...++.+.|++|++|+++|++++.+|+|.+|.|+++ .+.+|++.++..+++|++||+
T Consensus 3 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~-~~~~G~~~~~~~~~~G~~~G~- 80 (220)
T 2fmy_A 3 QMRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVY-LAYEDKEFTLAILEAGDIFCT- 80 (220)
T ss_dssp TTCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEE-EECSSCEEEEEEEETTCEEES-
T ss_pred hhhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEE-ECCCCCEEEEEEcCCCCEeCC-
Confidence 457889999999999999999999999999999999999999999999999999995 678999999999999999999
Q ss_pred hhhcCCCcccEEEEeeceeeEEechhhHHHHHHHhhhcHHHHHHHHhcc
Q 007326 466 SILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 514 (608)
Q Consensus 466 ~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~l~~~ 514 (608)
++.+++.|.++|+++.+++++|.++++++|++...+++.+..+
T Consensus 81 ------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~ 123 (220)
T 2fmy_A 81 ------HTRAFIQAMEDTTILYTDIRNFQNIVVEFPAFSLNMVKVLGDL 123 (220)
T ss_dssp ------CSSSEEEESSSEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHH
T ss_pred ------ccceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999999888877664
No 46
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.60 E-value=2.2e-15 Score=144.60 Aligned_cols=125 Identities=26% Similarity=0.341 Sum_probs=114.3
Q ss_pred hHhhhcccccccCCCHHHHHHHHHHcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecc
Q 007326 385 YLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGE 464 (608)
Q Consensus 385 ~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe 464 (608)
..+.|+++|+|++++++.++.++..++.+.|++|++|+++|++++.+|+|.+|.|+++. +|+ .+..+++|++||+
T Consensus 5 i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~---~~~--~~~~~~~g~~fGe 79 (246)
T 3of1_A 5 LEKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYV---NDN--KVNSSGPGSSFGE 79 (246)
T ss_dssp HHHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEES---TTS--CCEEECTTCEECH
T ss_pred HHHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEE---CCE--EEEecCCCCeeeh
Confidence 46788999999999999999999999999999999999999999999999999999986 443 4689999999999
Q ss_pred hhhhcCCCcccEEEEeeceeeEEechhhHHHHHHHhhhcHHHHHHHHhcc
Q 007326 465 VSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 514 (608)
Q Consensus 465 ~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~l~~~ 514 (608)
.+++.+.|+.++++|.++|+++.+++++|.+++..+|.....+...+++.
T Consensus 80 ~~l~~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (246)
T 3of1_A 80 LALMYNSPRAATVVATSDCLLWALDRLTFRKILLGSSFKKRLMYDDLLKS 129 (246)
T ss_dssp HHHHHTCCCSSEEEESSCEEEEEEEHHHHHHTTTTTTSHHHHHSHHHHHH
T ss_pred hHHhcCCCCCcEEEECCCeEEEEEEhHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999998777766665543
No 47
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.59 E-value=1.3e-15 Score=143.84 Aligned_cols=119 Identities=12% Similarity=0.092 Sum_probs=112.1
Q ss_pred hhcccccccCCCHHHHHHHHHHcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecchhh
Q 007326 388 YIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSI 467 (608)
Q Consensus 388 ~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~ 467 (608)
+|+++|+|..+++++++.++..++.+.|++|++|+++|++++++|+|.+|.|+++ .+.+|++.++..+++|++||
T Consensus 1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~-~~~~G~~~~~~~~~~G~~fG---- 75 (222)
T 1ft9_A 1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVY-LVGEEREISLFYLTSGDMFC---- 75 (222)
T ss_dssp -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEE-EEETTEEEEEEEEETTCEEE----
T ss_pred CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEE-ECCCCCEEEEEEcCCCCEec----
Confidence 3678999999999999999999999999999999999999999999999999997 77899999999999999999
Q ss_pred hcCCCcccEEEEeeceeeEEechhhHHHHHHHhhhcHHHHHHHHhcc
Q 007326 468 LCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 514 (608)
Q Consensus 468 ~~~~~~~~~~~a~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~l~~~ 514 (608)
.++.++++|.++|+++.+++++|.++++.+|.+...+++.+..+
T Consensus 76 ---~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~ 119 (222)
T 1ft9_A 76 ---MHSGCLVEATERTEVRFADIRTFEQKLQTCPSMAWGLIAILGRA 119 (222)
T ss_dssp ---SCSSCEEEESSCEEEEEECHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred ---CCCCEEEEEccceEEEEEeHHHHHHHHHHChHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999998887764
No 48
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.58 E-value=4.3e-15 Score=151.79 Aligned_cols=129 Identities=19% Similarity=0.264 Sum_probs=117.3
Q ss_pred HhHhhhcccccccCCCHHHHHHHHHHcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCc-ceeeEeeCCCCee
Q 007326 384 LYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGT-EDYVSYLHPNSSF 462 (608)
Q Consensus 384 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~-~~~~~~l~~G~~f 462 (608)
.+..+++++++|..+++..+..++..++.+.|.+|++|+++|+.++.+|+|.+|.|+++....+|+ +..+..+++|++|
T Consensus 245 ~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~~v~~l~~Gd~f 324 (381)
T 4din_B 245 MYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSDYF 324 (381)
T ss_dssp HHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCCEEEEECTTCEE
T ss_pred HHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceEEEEEeCCCCEe
Confidence 445678889999999999999999999999999999999999999999999999999998766665 4568999999999
Q ss_pred cchhhhcCCCcccEEEEeeceeeEEechhhHHHHHHHhhhcHHHHHHHHh
Q 007326 463 GEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLL 512 (608)
Q Consensus 463 Ge~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~l~ 512 (608)
||.+++.+.|+.++++|.++|+++.|++++|.+++..+|++..+.++.+.
T Consensus 325 Ge~all~~~~r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~i~~~~~~~~~ 374 (381)
T 4din_B 325 GEIALLLNRPRAATVVARGPLKCVKLDRPRFERVLGPCSEILKRNIQRYN 374 (381)
T ss_dssp CTTGGGSCCBCSSEEEESSCBEEEEEEHHHHHHHHCCHHHHHHTTHHHHH
T ss_pred chHHHhCCCCceeEEEEcCCEEEEEEeHHHHHHHHhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987776665543
No 49
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.58 E-value=8.5e-15 Score=149.59 Aligned_cols=127 Identities=25% Similarity=0.362 Sum_probs=117.8
Q ss_pred HHhHhhhcccccccCCCHHHHHHHHHHcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCee
Q 007326 383 TLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 383 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
....+.++++++|+.++++++..++..++.+.|++|++|+++|++++.+|+|.+|.|+++. +|+ .+..+++|++|
T Consensus 126 ~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~---~~~--~v~~l~~G~~f 200 (381)
T 4din_B 126 TALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYV---NGE--WVTNISEGGSF 200 (381)
T ss_dssp HHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEE---TTE--EEEEEESSCCB
T ss_pred HHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEE---CCe--EeeeCCCCCEE
Confidence 4457889999999999999999999999999999999999999999999999999999986 443 67889999999
Q ss_pred cchhhhcCCCcccEEEEeeceeeEEechhhHHHHHHHhhhcHHHHHHHHhcc
Q 007326 463 GEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 514 (608)
Q Consensus 463 Ge~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~l~~~ 514 (608)
|+.+++.+.|+.++++|.++|+++.|++++|.+++..+|.....++..++++
T Consensus 201 Ge~all~~~~r~atv~A~~~~~l~~i~~~~f~~ll~~~~~~~~~~~~~~L~~ 252 (381)
T 4din_B 201 GELALIYGTPRAATVKAKTDLKLWGIDRDSYRRILMGSTLRKRKMYEEFLSK 252 (381)
T ss_dssp CGGGGTSCCBCSSEEEESSSCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EchHHhcCCCcceEEEECCCEEEEEEchHHHHHhhhhhhHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999988887776664
No 50
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.58 E-value=7e-15 Score=141.04 Aligned_cols=117 Identities=19% Similarity=0.379 Sum_probs=107.4
Q ss_pred HhHhhhcccccccCCCHHHHHHHHHHcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeec
Q 007326 384 LYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 463 (608)
Q Consensus 384 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 463 (608)
....+++++++|..++++.+..++..++.+.|++|++|+++|++++.+|+|.+|.|+++..+. . .+..+++|++||
T Consensus 122 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~---~-~~~~l~~g~~fG 197 (246)
T 3of1_A 122 MYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQ---G-VINKLKDHDYFG 197 (246)
T ss_dssp HSHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTT---E-EEEEEETTCEEC
T ss_pred HHHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCC---c-eEEEcCCCCccc
Confidence 345677889999999999999999999999999999999999999999999999999987322 2 789999999999
Q ss_pred chhhhcCCCcccEEEEeeceeeEEechhhHHHHHHHhhhcH
Q 007326 464 EVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDG 504 (608)
Q Consensus 464 e~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~l~~~~~~~~ 504 (608)
|.+++.+.|+.++++|.++|+++.|++++|.+++..+|++.
T Consensus 198 e~~~~~~~~~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~~~ 238 (246)
T 3of1_A 198 EVALLNDLPRQATVTATKRTKVATLGKSGFQRLLGPAVDVL 238 (246)
T ss_dssp HHHHHHTCBCSSEEEESSCEEEEEEEHHHHHHHCTTHHHHH
T ss_pred HHHHhCCCCcccEEEECCCEEEEEEeHHHHHHHhccHHHHH
Confidence 99999999999999999999999999999999999888643
No 51
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.57 E-value=4.3e-15 Score=153.36 Aligned_cols=130 Identities=17% Similarity=0.315 Sum_probs=111.8
Q ss_pred HhHhhhcccccccCCCHHHHHHHHHHcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccC------CcceeeEeeC
Q 007326 384 LYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEEN------GTEDYVSYLH 457 (608)
Q Consensus 384 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~------g~~~~~~~l~ 457 (608)
.+..+++++++|..++++.+..++..++.+.|.+|++|+++|+.++.+|+|.+|.|+++..+.+ |++.++..++
T Consensus 264 ~~~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~l~~l~ 343 (416)
T 3tnp_B 264 MYESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARCF 343 (416)
T ss_dssp SSSSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CEEEEEC
T ss_pred HHHHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeEEEEeC
Confidence 3456788899999999999999999999999999999999999999999999999999987665 8888999999
Q ss_pred CCCeecchhhhcCCCcccEEEEeeceeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007326 458 PNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513 (608)
Q Consensus 458 ~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~l~~ 513 (608)
+|++|||.+++.+.++.++++|.++|+++.|++++|.+++..+|++..+.+..+.+
T Consensus 344 ~G~~fGE~all~~~~r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~i~~~~~~~~~~ 399 (416)
T 3tnp_B 344 RGQYFGELALVTNKPRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKRNIATYEE 399 (416)
T ss_dssp TTCEESGGGGTCCSCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTCC------
T ss_pred CCCEecHHHHhCCCCceeEEEEcCCeEEEEEEHHHHHHHhcchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999877666655544
No 52
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.57 E-value=4.3e-15 Score=142.92 Aligned_cols=124 Identities=16% Similarity=0.121 Sum_probs=114.9
Q ss_pred hhcccccccCCCHHHHHHHHHHcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecchhh
Q 007326 388 YIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSI 467 (608)
Q Consensus 388 ~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~ 467 (608)
++....++..+++++++.+...++.+.|++|++|+++|++++.+|+|.+|.|+++..+.+|++.++..+++|++||+ +
T Consensus 10 ~~~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~--~ 87 (250)
T 3e6c_C 10 FCGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGK--L 87 (250)
T ss_dssp CCCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEEEEEEECTTCEECC--C
T ss_pred hhhhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEee--e
Confidence 44555556899999999999999999999999999999999999999999999999999999999999999999999 7
Q ss_pred hcCCCcccEEEEeeceeeEEechhhHHHHHHHhhhcHHHHHHHHhcc
Q 007326 468 LCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 514 (608)
Q Consensus 468 ~~~~~~~~~~~a~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~l~~~ 514 (608)
+.+. +.++++|.++|+++.+++++|.+++.++|++...+++.+..+
T Consensus 88 l~~~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~ 133 (250)
T 3e6c_C 88 YPTG-NNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKNYLTK 133 (250)
T ss_dssp SCCS-CCEEEEESSSEEEEEECHHHHHHHHHHCTHHHHHHHHHHHHH
T ss_pred cCCC-CceEEEEcccEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 7777 999999999999999999999999999999999888877664
No 53
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.52 E-value=5.2e-14 Score=134.21 Aligned_cols=118 Identities=15% Similarity=0.153 Sum_probs=106.5
Q ss_pred cCCCHHHHHHHHH--HcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecchhhhcCCCc
Q 007326 396 KGCSSEFINQIVI--RLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQ 473 (608)
Q Consensus 396 ~~l~~~~l~~l~~--~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~ 473 (608)
+++++++++.+.. .++.+.|++|++|+++|++++.+|+|.+|.|+++..+.+|++.++..+ +|++||+.+++.+.+.
T Consensus 2 ~~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~-~G~~~Ge~~~~~~~~~ 80 (238)
T 2bgc_A 2 SNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYY-KGAFVIMSGFIDTETS 80 (238)
T ss_dssp --CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEEEEEE-ESSEEEESBCTTTCCB
T ss_pred CCCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEEEEEEc-CCCEecchhhhcCCCc
Confidence 3678899999885 589999999999999999999999999999999999999999999999 9999999999988874
Q ss_pred --ccEEEEe-eceeeEEechhhHHHHHHHhhhcHHHHHHHHhcc
Q 007326 474 --PYTVQVC-ELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 514 (608)
Q Consensus 474 --~~~~~a~-~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~l~~~ 514 (608)
..++.|. ++|+++.+++++|.++++++|.+...+++.+..+
T Consensus 81 ~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~ 124 (238)
T 2bgc_A 81 VGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQ 124 (238)
T ss_dssp SCCCEEEECSSEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CcceeEEEEEcceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 6788888 5999999999999999999999999888877664
No 54
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.51 E-value=5.1e-14 Score=134.74 Aligned_cols=115 Identities=21% Similarity=0.234 Sum_probs=106.2
Q ss_pred HHHHHHHHHHcc---cccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecchhhhcCCCc--c
Q 007326 400 SEFINQIVIRLH---EEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQ--P 474 (608)
Q Consensus 400 ~~~l~~l~~~~~---~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~--~ 474 (608)
++.++.|..... .+.|++|++|+++|++++.+|+|.+|.|+++..+.+|++.++..+++|++||+.+++.+.+. .
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~l~~~~~g~~~G~~~~~~~~~~~~~ 109 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEITVALLRENSVFGVLSLLTGNKSDRF 109 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEEEEEEECTTCEESCHHHHSSCCSBCC
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEcchHHhCCCCCcce
Confidence 677777877777 99999999999999999999999999999999999999999999999999999999998874 4
Q ss_pred cEEEEeeceeeEEechhhHHHHHHHhhhcHHHHHHHHhcc
Q 007326 475 YTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 514 (608)
Q Consensus 475 ~~~~a~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~l~~~ 514 (608)
++++|.++|+++.+++++|.++++++|++...+++.+..+
T Consensus 110 ~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~ 149 (243)
T 3la7_A 110 YHAVAFTPVELLSAPIEQVEQALKENPELSMLMLRGLSSR 149 (243)
T ss_dssp EEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred EEEEEccceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999888877663
No 55
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.51 E-value=4.1e-15 Score=120.29 Aligned_cols=89 Identities=20% Similarity=0.077 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccCCCCcccccccchHHHHHHHHHHHhhhhcccccCCccc
Q 007326 208 RIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHA 287 (608)
Q Consensus 208 ~~~~l~~~~~~~~h~~ac~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~y~~~~t~ttvGygdi~p 287 (608)
.++..++.+++++.+.++++|+++...+++ ....|.+|+||+++|+||+||||++|
T Consensus 7 ~~l~~~~~~~~~~~~~a~~~~~~E~~~~~~------------------------~~~~~~~a~y~~~~T~tTvGyGDi~P 62 (103)
T 2k1e_A 7 EAQKAEEELQKVLEEASKKAVEAERGAPGA------------------------ALISYPDAIWWSVETATTVGYGDRYP 62 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSTTC------------------------CCCCGGGTTTTTTGGGGCCSCCSSCC
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCCCc------------------------ccccHHHHHHHHHHHHhcccCCCCCC
Confidence 344555666667777888888887543211 11245699999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 007326 288 VNLREMVFIMIYVSFDMILGAYLIGNMTALIVK 320 (608)
Q Consensus 288 ~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~ 320 (608)
.|..+++++++++++|+.+++++++.+.+.+.+
T Consensus 63 ~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~ 95 (103)
T 2k1e_A 63 VTEEGRKVAEQVMKAGIEVFALVTAALATDFVR 95 (103)
T ss_dssp CSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGG
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999887765
No 56
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.50 E-value=8.5e-14 Score=146.98 Aligned_cols=124 Identities=19% Similarity=0.321 Sum_probs=108.0
Q ss_pred HHhHhhhcccccccCCCHHHHHHHHHHccc-ccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCe
Q 007326 383 TLYLPYIEKVPLFKGCSSEFINQIVIRLHE-EFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSS 461 (608)
Q Consensus 383 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~-~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~ 461 (608)
+...+.++++++|..++++.+..++..+.. +.|++|++|+++|+.++.+|+|.+|.|+++. .|+ .++..+++|++
T Consensus 333 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~---~~~-~~~~~l~~G~~ 408 (469)
T 1o7f_A 333 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVI---YGK-GVVCTLHEGDD 408 (469)
T ss_dssp HHHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEE---TTT-EEEEEEETTCE
T ss_pred HHHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEE---cCC-eeEEEecCCCE
Confidence 445678999999999999999999999985 4899999999999999999999999999987 233 37899999999
Q ss_pred ecchhhhcCCCcccEEEEee-ceeeEEechhhHHHHHHHhhhcHHHHHHH
Q 007326 462 FGEVSILCNIPQPYTVQVCE-LCRLLRIDKQSFTNIIDIYFCDGRKVLTN 510 (608)
Q Consensus 462 fGe~~~~~~~~~~~~~~a~~-~~~l~~l~~~~~~~l~~~~~~~~~~~~~~ 510 (608)
||+.+++.+.|+.++++|.+ +|+++.|++++|.+++..+|....++.+.
T Consensus 409 fGe~~ll~~~~~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~~~~l~e~ 458 (469)
T 1o7f_A 409 FGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRLKEH 458 (469)
T ss_dssp ECGGGGTCCSCCSSEEEESSSSEEEEEEEHHHHHHHHHHTTCC-------
T ss_pred EEEehhhcCCCceEEEEEecCCEEEEEEcHHHHHHHHHHChHHHHHHHhc
Confidence 99999999999999999998 79999999999999999999988776443
No 57
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.49 E-value=2.1e-13 Score=112.06 Aligned_cols=55 Identities=27% Similarity=0.352 Sum_probs=52.4
Q ss_pred HHHHHHHHhhhhcccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 007326 266 YITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK 320 (608)
Q Consensus 266 Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~ 320 (608)
|.+|+||+++|+||+||||+.|.|..+++++++++++|+.++++.++.+.+.+..
T Consensus 50 ~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~ 104 (114)
T 2q67_A 50 PIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQL 104 (114)
T ss_dssp HHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6699999999999999999999999999999999999999999999999998754
No 58
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.45 E-value=2.3e-13 Score=156.64 Aligned_cols=128 Identities=23% Similarity=0.302 Sum_probs=113.8
Q ss_pred HHHHHHHHhHhhhcccccccCCCHHHHHHHHHHcccccccCCCeEEccCCccCeEEEEEeeEEEEEEecc--CCcceeeE
Q 007326 377 RAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEE--NGTEDYVS 454 (608)
Q Consensus 377 ~~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~--~g~~~~~~ 454 (608)
|.+-..+.....|+++++|+++++..+.+++.+++.+.|++|++||++||.++++|+|.+|+|.++..+. ++.+.++.
T Consensus 32 Rt~edl~~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~~~~~~~~~v~ 111 (999)
T 4f7z_A 32 RSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTIC 111 (999)
T ss_dssp CCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSSSCTTSCEEEE
T ss_pred CCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecCCCCCCceeEE
Confidence 4333345556789999999999999999999999999999999999999999999999999999987543 34566889
Q ss_pred eeCCCCeecchhhhcCCCcccEEEEeeceeeEEechhhHHHHHHHhhhcHH
Q 007326 455 YLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGR 505 (608)
Q Consensus 455 ~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~l~~~~~~~~~ 505 (608)
.+.+|+.||| +++.+.||+++++|.++|+++.+++++|..+++++|+...
T Consensus 112 ~l~~G~sFGE-all~n~pRtaTv~a~~~s~l~~l~r~~F~~i~~~~~e~~~ 161 (999)
T 4f7z_A 112 TLGIGTAFGE-SILDNTPRHATIVTRESSELLRIEQEDFKALWEKYRQYMA 161 (999)
T ss_dssp EEETTCEECG-GGGGTCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHT
T ss_pred EecCCcchhh-hhccCCCcceEEEeccceEEEEEEHHHHHHHHHhChHHHH
Confidence 9999999999 7889999999999999999999999999999999986443
No 59
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=99.44 E-value=3.8e-13 Score=103.33 Aligned_cols=53 Identities=25% Similarity=0.378 Sum_probs=50.5
Q ss_pred HHHHHHHHhhhhcccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007326 266 YITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALI 318 (608)
Q Consensus 266 Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~ 318 (608)
|.+|+||+++|+||+||||+.|.|..+|+++++.+++|+.++++.++.+++.+
T Consensus 29 ~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 29 WTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66999999999999999999999999999999999999999999999998764
No 60
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.43 E-value=5e-13 Score=106.27 Aligned_cols=54 Identities=31% Similarity=0.448 Sum_probs=51.5
Q ss_pred HHHHHHHHhhhhcccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007326 266 YITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIV 319 (608)
Q Consensus 266 Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~ 319 (608)
|.+|+||+++|+|||||||+.|.|..+|+++++.+++|+.++++.++.++..++
T Consensus 33 ~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~ 86 (97)
T 3ouf_A 33 PIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQ 86 (97)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 679999999999999999999999999999999999999999999999988765
No 61
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.43 E-value=2.5e-13 Score=147.97 Aligned_cols=128 Identities=20% Similarity=0.326 Sum_probs=114.1
Q ss_pred HHHHHHHHHhHhhhcccccccCCCHHHHHHHHHHcc-cccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeE
Q 007326 376 IRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLH-EEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVS 454 (608)
Q Consensus 376 l~~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~-~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~ 454 (608)
.|.+...+...+.++++++|.+++++.++.++..+. .+.|++|++|+++||+++.+|+|.+|.|+++.. |+ .++.
T Consensus 21 ~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~---g~-~il~ 96 (694)
T 3cf6_E 21 QRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIY---GK-GVVC 96 (694)
T ss_dssp GCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEET---TT-EEEE
T ss_pred hCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEe---CC-EEEE
Confidence 344444455677899999999999999999999998 789999999999999999999999999999873 44 5889
Q ss_pred eeCCCCeecchhhhcCCCcccEEEEee-ceeeEEechhhHHHHHHHhhhcHHHH
Q 007326 455 YLHPNSSFGEVSILCNIPQPYTVQVCE-LCRLLRIDKQSFTNIIDIYFCDGRKV 507 (608)
Q Consensus 455 ~l~~G~~fGe~~~~~~~~~~~~~~a~~-~~~l~~l~~~~~~~l~~~~~~~~~~~ 507 (608)
.+++|++||+.+++.+.++.++++|.+ +|+++.+++++|.++++++|.+...+
T Consensus 97 ~l~~Gd~fGe~al~~~~~~~~tv~A~edd~~ll~I~~~~f~~ll~~~p~l~~~l 150 (694)
T 3cf6_E 97 TLHEGDDFGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRL 150 (694)
T ss_dssp EEETTCEECHHHHHHTCBCSSEEEECSSSEEEEEEEHHHHHHHTTTTCCCCEEE
T ss_pred EeCCCCEeehHHHhCCCCceEEEEEeeCceEEEEEeHHHHHHHHHHCHHHHHHH
Confidence 999999999999999999999999999 59999999999999999999875543
No 62
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=99.39 E-value=7.8e-13 Score=121.79 Aligned_cols=95 Identities=20% Similarity=0.231 Sum_probs=87.5
Q ss_pred ccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecchhhhcCCCcccEEEEeeceeeEEechhh
Q 007326 413 EFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQS 492 (608)
Q Consensus 413 ~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~~~ 492 (608)
+.|++|++|+++|++++.+|+|.+|.|+++..+.+|++.++..+.+|++||+ +++.+.|+.++++|.++|+++.+++++
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~Ge-~~~~~~~~~~~~~A~~~~~v~~i~~~~ 80 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLITLRHVLPGDYFGE-EALEGKAYRYTAEAMTEAVVQGLEPRA 80 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEEEEEEECTTCEECG-GGGTCSBCSSEEEESSSEEEEEECGGG
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEecCCCEech-hhhCCCCceeEEEECCcEEEEEEcHHH
Confidence 5789999999999999999999999999999889999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHhhhcHHHHHHHHhcc
Q 007326 493 FTNIIDIYFCDGRKVLTNLLQG 514 (608)
Q Consensus 493 ~~~l~~~~~~~~~~~~~~l~~~ 514 (608)
|. |++...+++.+..+
T Consensus 81 ~~------p~~~~~~~~~l~~~ 96 (195)
T 3b02_A 81 MD------HEALHRVARNLARQ 96 (195)
T ss_dssp CC------HHHHHHHHHHHHHH
T ss_pred cC------HHHHHHHHHHHHHH
Confidence 98 77777777666553
No 63
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=99.29 E-value=3.6e-12 Score=118.02 Aligned_cols=99 Identities=21% Similarity=0.216 Sum_probs=87.0
Q ss_pred HHHcccccccCCCeEEccCCcc--CeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecchhhhcCCCcccEEEEeecee
Q 007326 407 VIRLHEEFFLPGEVIMEKGNVV--DQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCR 484 (608)
Q Consensus 407 ~~~~~~~~~~~g~~I~~~g~~~--~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~ 484 (608)
...++.+.|++|++|+++|+++ +.+|+|.+|.|+++..+++|++.++..+.+|++||+ +++.+.++.+++.|.++|+
T Consensus 2 ~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~-~~l~~~~~~~~~~A~~~~~ 80 (202)
T 2zcw_A 2 TQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALTLRLVRPGGFFGE-EALFGQERIYFAEAATDVR 80 (202)
T ss_dssp ----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEEEEEEECTTCEECT-HHHHTCCBCSEEEESSCEE
T ss_pred CccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCCEeee-hhcCCCCcceEEEEcccEE
Confidence 4567889999999999999999 999999999999999889999999999999999999 8888999999999999999
Q ss_pred eEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007326 485 LLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513 (608)
Q Consensus 485 l~~l~~~~~~~l~~~~~~~~~~~~~~l~~ 513 (608)
++.+ +++|. |++...+++.+..
T Consensus 81 v~~i-~~~~~------p~~~~~~~~~l~~ 102 (202)
T 2zcw_A 81 LEPL-PENPD------PELLKDLAQHLSQ 102 (202)
T ss_dssp EEEC-CSSCC------HHHHHHHHHHHHH
T ss_pred EEEE-hHhcC------HHHHHHHHHHHHH
Confidence 9999 98886 6666666666554
No 64
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.27 E-value=1.6e-11 Score=141.30 Aligned_cols=114 Identities=20% Similarity=0.318 Sum_probs=101.7
Q ss_pred HHhHhhhcccccccCCCHHHHHHHHHHccccc-ccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCe
Q 007326 383 TLYLPYIEKVPLFKGCSSEFINQIVIRLHEEF-FLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSS 461 (608)
Q Consensus 383 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~-~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~ 461 (608)
+...+.+.++|.|++++...++.|+..+.... +++|++|++|||.++++|+|.+|.|+|+. ++ +..+..+++||+
T Consensus 333 e~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~---~~-~~~v~~L~~Gd~ 408 (999)
T 4f7z_A 333 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVI---YG-KGVVCTLHEGDD 408 (999)
T ss_dssp HHHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEE---TT-TEEEEEEETTCE
T ss_pred HHHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEE---cC-CcceEEecCCCc
Confidence 34567789999999999999999999988654 57899999999999999999999999986 23 236789999999
Q ss_pred ecchhhhcCCCcccEEEEeec-eeeEEechhhHHHHHHHh
Q 007326 462 FGEVSILCNIPQPYTVQVCEL-CRLLRIDKQSFTNIIDIY 500 (608)
Q Consensus 462 fGe~~~~~~~~~~~~~~a~~~-~~l~~l~~~~~~~l~~~~ 500 (608)
|||.+++.+.||.+|++|.++ |+++.+++++|.+++..-
T Consensus 409 FGElALL~~~PR~aTV~a~~d~c~fl~i~k~df~~il~~~ 448 (999)
T 4f7z_A 409 FGKLALVNDAPRAASIVLREDNCHFLRVDKEDGNRILRDV 448 (999)
T ss_dssp ECGGGGTCSCBCSSEEEESSSSEEEEEEEHHHHHHHHHHH
T ss_pred ccchhhccCCCeeEEEEEecCceEEEEeeHHHHHHHHhHH
Confidence 999999999999999999985 999999999999999764
No 65
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=99.21 E-value=4.5e-11 Score=115.69 Aligned_cols=56 Identities=21% Similarity=0.293 Sum_probs=52.8
Q ss_pred HHHHHHHHHhhhhcccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 007326 265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK 320 (608)
Q Consensus 265 ~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~ 320 (608)
.|.+|+||+++|+|||||||++|.+..+++++++.+++|++++|+++|.+.+.+.+
T Consensus 82 s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~ 137 (301)
T 1xl4_A 82 SFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTR 137 (301)
T ss_dssp CHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46799999999999999999999999999999999999999999999999887764
No 66
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.21 E-value=2.2e-11 Score=97.07 Aligned_cols=68 Identities=38% Similarity=0.554 Sum_probs=53.6
Q ss_pred hhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCC
Q 007326 540 ALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQ 607 (608)
Q Consensus 540 ~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t 607 (608)
.++++.|+..++.+.++.|++.|++++.+|..|+||||.|+..++.+++++|+++|+|++.+|..|+|
T Consensus 3 ~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t 70 (93)
T 1n0q_A 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRT 70 (93)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCC
Confidence 45677777778888888888888888888877888888888888888888888888888877777776
No 67
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.20 E-value=2.5e-11 Score=108.58 Aligned_cols=79 Identities=33% Similarity=0.459 Sum_probs=71.8
Q ss_pred ccccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 530 FHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 530 ~~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
..++..+....+|++.|+..+..++++.|++.|+++|.+|..|+||||+|+..|+.+++++|+++|||++.+|..|+|+
T Consensus 61 ad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~Tp 139 (169)
T 4gpm_A 61 ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTP 139 (169)
T ss_dssp CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred cchhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH
Confidence 3445556677889999999999999999999999999999999999999999999999999999999999999999984
No 68
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=99.19 E-value=1.1e-12 Score=116.08 Aligned_cols=56 Identities=25% Similarity=0.361 Sum_probs=52.6
Q ss_pred HHHHHHHHHhhhhcccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 007326 265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK 320 (608)
Q Consensus 265 ~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~ 320 (608)
.|.+|+||+++|+|||||||++|.|..+++++++++++|+++++++++.+++.+.+
T Consensus 67 ~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~ 122 (166)
T 3pjs_K 67 TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVG 122 (166)
T ss_dssp STTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSS
T ss_pred CHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35689999999999999999999999999999999999999999999999887765
No 69
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=99.16 E-value=9e-11 Score=110.60 Aligned_cols=204 Identities=13% Similarity=0.139 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhheecc--CCCcCeehHHHHHHHHHHHHHHhhceeeEEeCCCcEEeeccHHHHHHHhhc-c
Q 007326 75 AWTKFILIWAVYSSIFTPVEFGFFR--GLSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRS-S 151 (608)
Q Consensus 75 ~w~~~~~~~~~~~~~~~p~~~~f~~--~~~~~~~~~~~~~~~if~~d~~l~f~t~~~~~~~~~~i~~~~~i~~~y~~~-~ 151 (608)
.++.++.++++.+.+...... ... .....+..+|.++.++|.+|+++|+...- . .++|+++ |
T Consensus 13 ~f~~~i~~~I~ln~i~l~~~~-~~~~~~~~~~l~~~e~~~~~iF~~E~~lri~~~~------------~--~~~y~~~~w 77 (229)
T 4dxw_A 13 IFQFTVVSIIILNAVLIGATT-YELDPLFLETIHLLDYGITIFFVIEILIRFIGEK------------Q--KADFFKSGW 77 (229)
T ss_dssp HHHHHHHHHHHHHHHSTTTCC-SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------------CHH
T ss_pred hHHHHHHHHHHHHHHHHHHcc-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcC------------c--hhHHhcCCc
Confidence 567777787787877765543 111 11223677899999999999999987641 1 2789998 4
Q ss_pred chhHHHhhccHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007326 152 FIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFFHKMEKDIR-INYMFSRIVKLIAVELYCSHIAACIFYYL 230 (608)
Q Consensus 152 f~iDll~~lP~~~~~~~~~~~~~~~~l~llrl~rl~r~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~h~~ac~~~~~ 230 (608)
-++|++.++|..+.... ...++.+|++|++|++|+.++.+.++.... +......+..+...++++...+|.+-+.+
T Consensus 78 ni~D~~~v~~~~i~~~~---~~~~~~lr~~RilR~lrl~~~~~~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifa~~g~~l 154 (229)
T 4dxw_A 78 NIFDTVIVAISLIPIPN---NSSFLVLRLLRIFRVLRLISVIPELKQIIEAILESVRRVFFVSLLLFIILYIYATMGAIL 154 (229)
T ss_dssp HHHHHHHHHHTTCC-----------CCTTHHHHHHTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCc---cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 59998887765432211 123445566777777777777666655332 22334456666666666666777765555
Q ss_pred hhcCCCCCCCcccccccccCCCCcccccccchHHHHHHHHHHHhhhhcccccCCcccC----ChhhH-HHHHHHHHHHHH
Q 007326 231 ATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAV----NLREM-VFIMIYVSFDMI 305 (608)
Q Consensus 231 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~y~~~~t~ttvGygdi~p~----~~~e~-~~~~~~~~~g~~ 305 (608)
.....+ +.+++...|+||...++||.||+|+... +.... .+..++.+.+.+
T Consensus 155 f~~~~~------------------------~~F~~~~~a~~~lf~~~t~~~w~~i~~~~~~~~~~~~~~f~~~~~i~~~i 210 (229)
T 4dxw_A 155 FGNDDP------------------------SRWGDLGISLITLFQVLTLSSWETVMLPMQEIYWWSWVYFFSFIIICSIT 210 (229)
T ss_dssp TTTTSC------------------------TTTSSHHHHHHHHHHHHTTSSTHHHHHHHHTTCTTHHHHHHHHHHHHHHH
T ss_pred hccCCc------------------------ccccCHHHHHHHHHHHHccCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 432211 1123456999999999999999996321 12222 333444444455
Q ss_pred HHHHHHHHHHHHHHc
Q 007326 306 LGAYLIGNMTALIVK 320 (608)
Q Consensus 306 ~~a~~i~~i~~~~~~ 320 (608)
+...+++.+.+-+++
T Consensus 211 ~lNlfiavi~~~f~~ 225 (229)
T 4dxw_A 211 ILNLVIAILVDVVIQ 225 (229)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 555666666555543
No 70
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=99.16 E-value=1.6e-10 Score=112.59 Aligned_cols=57 Identities=23% Similarity=0.275 Sum_probs=53.9
Q ss_pred HHHHHHHHHhhhhcccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 007326 265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKG 321 (608)
Q Consensus 265 ~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~~ 321 (608)
.|.+|+||+++|+|||||||+.|.+..+++++++.+++|++++|+++|.+.+.+++.
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~ 134 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQP 134 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467999999999999999999999999999999999999999999999999988763
No 71
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=99.15 E-value=6.4e-11 Score=115.72 Aligned_cols=57 Identities=25% Similarity=0.345 Sum_probs=53.7
Q ss_pred HHHHHHHHHhhhhcccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 007326 265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKG 321 (608)
Q Consensus 265 ~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~~ 321 (608)
.|.+|+||+++|+|||||||++|.+..+++++++.+++|++++++++|.+.+.+.+.
T Consensus 96 s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~ 152 (333)
T 1p7b_A 96 GFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARP 152 (333)
T ss_dssp STHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred cHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356999999999999999999999999999999999999999999999999988764
No 72
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.11 E-value=1.1e-10 Score=98.38 Aligned_cols=78 Identities=28% Similarity=0.295 Sum_probs=72.1
Q ss_pred cccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 531 ~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
.++..+....++++.|+..++.+.++.|++.|++++..|..|+||||.|+..++.+++++|+++|+|++.+|..|.|+
T Consensus 32 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~ 109 (123)
T 3aaa_C 32 DVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTA 109 (123)
T ss_dssp CTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred CcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence 344555667899999999999999999999999999999999999999999999999999999999999999999884
No 73
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.11 E-value=2.3e-10 Score=102.27 Aligned_cols=80 Identities=34% Similarity=0.459 Sum_probs=74.5
Q ss_pred cccccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 529 TFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 529 ~~~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
..+++..+....++++.++..+..+.++.|++.|++++.+|..|+||||+|+..|+.+++++|+++|||+|.+|.+|+|+
T Consensus 27 Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~Tp 106 (169)
T 4gpm_A 27 GADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTP 106 (169)
T ss_dssp TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCH
Confidence 34556667788899999999999999999999999999999999999999999999999999999999999999999984
No 74
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=99.07 E-value=2.9e-10 Score=109.27 Aligned_cols=56 Identities=20% Similarity=0.293 Sum_probs=53.0
Q ss_pred HHHHHHHHHhhhhcccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 007326 265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK 320 (608)
Q Consensus 265 ~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~ 320 (608)
.|.+|+||+++|+|||||||++|.|..+|+++++++++|+.+++++++.++..+.+
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~ 170 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGS 170 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999887754
No 75
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.06 E-value=3.2e-10 Score=93.41 Aligned_cols=76 Identities=30% Similarity=0.411 Sum_probs=68.9
Q ss_pred cchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 533 SKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 533 ~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
...+.+..++++.|+..++.+.++.|++.|++++..|..|.||||.|+..|+.+++++|+++|++++.+|..|+|+
T Consensus 18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tp 93 (110)
T 2zgd_A 18 SHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTA 93 (110)
T ss_dssp ----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred cccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcH
Confidence 3445667889999999999999999999999999999999999999999999999999999999999999999883
No 76
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.05 E-value=1.9e-10 Score=111.40 Aligned_cols=79 Identities=16% Similarity=0.164 Sum_probs=73.5
Q ss_pred ccccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 530 FHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 530 ~~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
..++..+..+.+|++.|+..|+.++++.|++.|+++|..+..|+||||+|+..|+.+++++|+++|||+|.+|..|+|+
T Consensus 143 ~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~Tp 221 (269)
T 4b93_B 143 AKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTA 221 (269)
T ss_dssp CCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCS
T ss_pred CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCH
Confidence 3455566677899999999999999999999999999999999999999999999999999999999999999999985
No 77
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=99.05 E-value=2.4e-09 Score=104.21 Aligned_cols=98 Identities=18% Similarity=0.318 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCC--CCCCcccccccccCCCCcccccccchHHHHHHHHHHHhhhhcccccCCcccC
Q 007326 211 KLIAVELYCSHIAACIFYYLATTLPP--EQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAV 288 (608)
Q Consensus 211 ~l~~~~~~~~h~~ac~~~~~~~~~~~--~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~y~~~~t~ttvGygdi~p~ 288 (608)
.+++..++...+||++||.++...++ ...+.+|.+... + ...+.+|+||+++|+|||||||+.|.
T Consensus 48 if~~~y~~swl~Fa~ly~~ia~~~Gdl~~~~~~~~~~Cv~-------~------~~sf~~af~fSv~T~TTvGYGd~~p~ 114 (340)
T 3sya_A 48 IFVMVYTVTWLFFGMIWWLIAYIRGDMDHIEDPSWTPCVT-------N------LNGFVSAFLFSIETETTIGYGYRVIT 114 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTCSSCSSCCCSBS-------C------CCSTTHHHHHHHHHHSCCCCSSSCBC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhc-------c------ccCHHHHHhhhheeeeeecCCCccCc
Confidence 33444555566789999988742211 111122322111 0 12345999999999999999999997
Q ss_pred --ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 007326 289 --NLREMVFIMIYVSFDMILGAYLIGNMTALIVKG 321 (608)
Q Consensus 289 --~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~~ 321 (608)
++.+++++++.+++|+++.|+++|.+.+-+++.
T Consensus 115 ~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp 149 (340)
T 3sya_A 115 DKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQP 149 (340)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCG
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 688999999999999999999999999888763
No 78
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.01 E-value=4.9e-10 Score=96.36 Aligned_cols=78 Identities=27% Similarity=0.273 Sum_probs=72.1
Q ss_pred cccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 531 ~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
.++..+....++++.|+..++.++++.|++.|++++..|..|.||||+|+..++.+++++|+++|+|++.+|..|.|+
T Consensus 35 ~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tp 112 (137)
T 3c5r_A 35 DPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRP 112 (137)
T ss_dssp CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCG
T ss_pred CCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence 344455667889999999999999999999999999999999999999999999999999999999999999999984
No 79
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.01 E-value=6.7e-10 Score=95.40 Aligned_cols=78 Identities=32% Similarity=0.374 Sum_probs=72.1
Q ss_pred cccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 531 ~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
.++..+....++++.|+..++.++++.|++.|++++..|..|.||||.|+..|+.+++++|+++|++++.+|..|.|+
T Consensus 39 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tp 116 (136)
T 2jab_A 39 DVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTA 116 (136)
T ss_dssp CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCH
Confidence 344556677899999999999999999999999999999999999999999999999999999999999999999883
No 80
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.00 E-value=5e-10 Score=96.22 Aligned_cols=77 Identities=19% Similarity=0.169 Sum_probs=70.6
Q ss_pred cccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCC-CChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYD-GRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 531 ~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~-g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
.++..+....++++.|+. +..++++.|+++|++++..|.. |.||||+|+..|+.+++++|+++|+|++.+|..|+|+
T Consensus 37 ~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tp 114 (136)
T 1d9s_A 37 DPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLP 114 (136)
T ss_dssp CTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCH
T ss_pred CcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCH
Confidence 344455667889999999 9999999999999999999999 9999999999999999999999999999999999884
No 81
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=98.97 E-value=1.3e-09 Score=98.84 Aligned_cols=79 Identities=23% Similarity=0.231 Sum_probs=73.1
Q ss_pred ccccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCC-CCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 530 FHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTD-YDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 530 ~~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d-~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
..++..+....+++|.|+..++.+.++.|+++|++++..+ ..|+||||+|+..|+.+++++|+++|+|++.+|..|.|+
T Consensus 67 ~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tp 146 (183)
T 3deo_A 67 RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTA 146 (183)
T ss_dssp SCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCH
T ss_pred CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCH
Confidence 3455566778899999999999999999999999999998 889999999999999999999999999999999999984
No 82
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=98.97 E-value=4.4e-10 Score=93.37 Aligned_cols=78 Identities=28% Similarity=0.375 Sum_probs=70.4
Q ss_pred cccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 531 ~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
.++..+....++++.|+..+..++++.|++.|++++..|..|.||||.|+..++.+++++|+++|||+|.++..|.|+
T Consensus 34 ~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~ 111 (115)
T 2l6b_A 34 DVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHH 111 (115)
T ss_dssp CSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred CCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCcccccc
Confidence 344555667889999999999999999999999999999999999999999999999999999999999999998874
No 83
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=98.96 E-value=1.4e-09 Score=96.75 Aligned_cols=78 Identities=27% Similarity=0.271 Sum_probs=71.1
Q ss_pred cccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 531 ~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
.++..+....++++.|+..++.++++.|++.|++++..|..|.||||+|+..|+.+++++|+++|+|++.+|..|.|+
T Consensus 67 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~ 144 (165)
T 3twr_A 67 DVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTP 144 (165)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCT
T ss_pred CCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCh
Confidence 344555667789999999999999999999999999999999999999999999999999999999999999999885
No 84
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=98.96 E-value=1.1e-09 Score=106.43 Aligned_cols=77 Identities=13% Similarity=0.173 Sum_probs=71.1
Q ss_pred ccchhhhhhhhhhhhhhc---CCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 532 ISKHEAELALKVNSAAYH---GDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 532 ~~~~~~~~~~~l~~aa~~---g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
++..+....+++|.|+.. +..++++.|+++|+++|..|..|+||||.|+..|+.+++++|+++|||+|.+|..|.|+
T Consensus 162 l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tp 241 (278)
T 1dcq_A 162 LANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETP 241 (278)
T ss_dssp CSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred ccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCH
Confidence 344456678999999998 89999999999999999999999999999999999999999999999999999999984
No 85
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=98.95 E-value=1.3e-09 Score=91.82 Aligned_cols=71 Identities=37% Similarity=0.468 Sum_probs=66.9
Q ss_pred hhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 538 ELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 538 ~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
...++++.|+..++.+.++.|++.|++++..|..|+||||+|+..++.+++++|+++|+++|.+|..|+|+
T Consensus 6 ~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tp 76 (123)
T 3aaa_C 6 MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITP 76 (123)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCH
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCH
Confidence 34578999999999999999999999999999999999999999999999999999999999999999984
No 86
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=98.95 E-value=1.2e-09 Score=95.80 Aligned_cols=78 Identities=23% Similarity=0.274 Sum_probs=70.9
Q ss_pred cccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 531 ~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
.++..+....++++.|+..++.+.++.|+++|++++..|..|.||||.|+..|+.+++++|+++|+|++.+|..|.|+
T Consensus 59 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~ 136 (153)
T 1awc_B 59 SRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTA 136 (153)
T ss_dssp CTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred CCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH
Confidence 344455667889999999999999999999999999999999999999999999999999999999999999999873
No 87
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.94 E-value=2.6e-09 Score=102.65 Aligned_cols=55 Identities=20% Similarity=0.325 Sum_probs=51.1
Q ss_pred HHHHHHHHhhhhcccccCCcccCChhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 007326 266 YITSMYASVVTMTTVGYGDVHAVNLREM------VFIMIYVSFDMILGAYLIGNMTALIVK 320 (608)
Q Consensus 266 Y~~s~y~~~~t~ttvGygdi~p~~~~e~------~~~~~~~~~g~~~~a~~i~~i~~~~~~ 320 (608)
|++|+||+++|+|||||||+.|.+..++ +++++++++|+.+++++++.+++.+..
T Consensus 225 ~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~ 285 (309)
T 3um7_A 225 KLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRV 285 (309)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6799999999999999999999998886 599999999999999999999887765
No 88
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=98.93 E-value=1.2e-09 Score=99.27 Aligned_cols=70 Identities=17% Similarity=0.112 Sum_probs=55.3
Q ss_pred hhhhhhhhhhhhcCCH----HHHHHHHHcCCCCCCCCCCCChHhhHHHhcCc------HHHHHHHHHcCCCCCccCCCCC
Q 007326 537 AELALKVNSAAYHGDL----YQLEGLIRAGADPNRTDYDGRSPLHLAASRGY------EEIMTFLIQKGVDINLKGNSIM 606 (608)
Q Consensus 537 ~~~~~~l~~aa~~g~~----~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~------~~~v~~Ll~~gad~~~~~~~g~ 606 (608)
..+.+++|.|+..++. +++++|+++|+++|.+|..|+||||+|+..++ .+++++|+++|||+|++|..|.
T Consensus 36 ~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ 115 (186)
T 3t8k_A 36 VLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYK 115 (186)
T ss_dssp HHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGT
T ss_pred cCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcC
Confidence 4567788888877764 37788888888888888888888888887776 5678888888888888888887
No 89
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=98.93 E-value=2.3e-09 Score=102.16 Aligned_cols=80 Identities=23% Similarity=0.228 Sum_probs=73.7
Q ss_pred cccccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCC-CCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCC
Q 007326 529 TFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTD-YDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQ 607 (608)
Q Consensus 529 ~~~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d-~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t 607 (608)
...++..+....+++|.|+..|+.++++.|+++|++++..+ ..|+||||.|+..|+.+++++|+++|+|+|.+|..|+|
T Consensus 67 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t 146 (244)
T 3ui2_A 67 DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLT 146 (244)
T ss_dssp TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC
T ss_pred CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCc
Confidence 34556667778899999999999999999999999999998 88999999999999999999999999999999999998
Q ss_pred C
Q 007326 608 M 608 (608)
Q Consensus 608 ~ 608 (608)
+
T Consensus 147 ~ 147 (244)
T 3ui2_A 147 A 147 (244)
T ss_dssp H
T ss_pred H
Confidence 4
No 90
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=98.92 E-value=2.3e-09 Score=96.81 Aligned_cols=78 Identities=22% Similarity=0.231 Sum_probs=70.0
Q ss_pred cccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 531 ~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
.++..+....++++.|+..++.++++.|++.|++++..|..|.||||.|+..++.+++++|+++|++++.+|..|.|+
T Consensus 64 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tp 141 (179)
T 3f6q_A 64 RINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMP 141 (179)
T ss_dssp CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCG
T ss_pred CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCc
Confidence 344455667789999999999999999999999999999999999999999999999999999999999999999884
No 91
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=98.91 E-value=1e-09 Score=91.15 Aligned_cols=73 Identities=33% Similarity=0.493 Sum_probs=68.7
Q ss_pred hhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 536 EAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 536 ~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
+....++++.|+..++.+.++.|++.|++++..|..|.||||.|+..++.+++++|+++|++++.+|..|+|+
T Consensus 6 d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tp 78 (115)
T 2l6b_A 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTP 78 (115)
T ss_dssp SCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCT
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCH
Confidence 3456788999999999999999999999999999999999999999999999999999999999999999884
No 92
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=98.90 E-value=1.2e-09 Score=96.35 Aligned_cols=77 Identities=25% Similarity=0.229 Sum_probs=56.1
Q ss_pred cccchhhhhhh-hhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCC
Q 007326 531 HISKHEAELAL-KVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQ 607 (608)
Q Consensus 531 ~~~~~~~~~~~-~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t 607 (608)
.++..+....+ +++.|+..+..++++.|+++|++++..|..|.||||+|+..|+.+++++|+++|+|++.+|..|.|
T Consensus 69 ~~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t 146 (156)
T 1bi7_B 69 EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARID 146 (156)
T ss_dssp CCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC------------
T ss_pred CCCCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCc
Confidence 34445556666 899999999999999999999999999999999999999999999999999999999999888876
No 93
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=98.90 E-value=3e-09 Score=91.21 Aligned_cols=72 Identities=32% Similarity=0.384 Sum_probs=68.3
Q ss_pred hhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 537 ~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
....++++.|+..|+.+.++.|++.|++++..|..|.||||.|+..++.+++++|+++|+++|.+|..|.|+
T Consensus 12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~ 83 (136)
T 2jab_A 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTP 83 (136)
T ss_dssp CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred ccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCH
Confidence 456788999999999999999999999999999999999999999999999999999999999999999873
No 94
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=98.90 E-value=2.9e-09 Score=96.17 Aligned_cols=78 Identities=28% Similarity=0.264 Sum_probs=72.1
Q ss_pred cccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 531 ~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
.++..+....++++.|+..++.+.++.|++.|++++..|..|.||||.|+..|+.+++++|+++|+++|.+|..|.|+
T Consensus 31 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~ 108 (179)
T 3f6q_A 31 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVP 108 (179)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred cccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCH
Confidence 344555667889999999999999999999999999999999999999999999999999999999999999999884
No 95
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=98.89 E-value=3.2e-09 Score=84.32 Aligned_cols=67 Identities=34% Similarity=0.520 Sum_probs=62.2
Q ss_pred cccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCC
Q 007326 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVD 597 (608)
Q Consensus 531 ~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad 597 (608)
.++..+....++++.|+..++.++++.|++.|++++.+|..|.||||+|+..|+.+++++|+++||+
T Consensus 27 ~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 27 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 93 (93)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 4455566788999999999999999999999999999999999999999999999999999999986
No 96
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.89 E-value=3.7e-09 Score=102.97 Aligned_cols=96 Identities=17% Similarity=0.240 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCC---CCCCcccccccccCCCCcccccccchHHHHHHHHHHHhhhhcccccCCcccC
Q 007326 212 LIAVELYCSHIAACIFYYLATTLPP---EQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAV 288 (608)
Q Consensus 212 l~~~~~~~~h~~ac~~~~~~~~~~~---~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~y~~~~t~ttvGygdi~p~ 288 (608)
+++..++...+||.+||+++..+++ .....+|.+... ....+..|+||++.|+||+||||+.|.
T Consensus 51 f~~~y~~swl~Fally~~ia~~~gdl~~~~~~~~~~~Cv~-------------~~~sf~~af~fSv~T~TTvGYGd~~p~ 117 (343)
T 3spc_A 51 FSLAFLVSWLLFGLIFWLIALIHGDLENPGGDDTFKPCVL-------------QVNGFVAAFLFSIETQTTIGYGFRCVT 117 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTGGGCTTCCSSCCCSEE-------------TCCSHHHHHHHHHHHHSCCCCSSSEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccc-------------ccCCHHHHhheeeeeeEeecCCCccCC
Confidence 3445555667788888887643221 111122322110 113467999999999999999999864
Q ss_pred --ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 007326 289 --NLREMVFIMIYVSFDMILGAYLIGNMTALIVK 320 (608)
Q Consensus 289 --~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~ 320 (608)
++.+++++.+.+++|+++.|.++|.+.+-+++
T Consensus 118 ~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~sr 151 (343)
T 3spc_A 118 EECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMAR 151 (343)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 89999999999999999999999999998876
No 97
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=98.89 E-value=3.4e-09 Score=94.23 Aligned_cols=78 Identities=26% Similarity=0.279 Sum_probs=71.6
Q ss_pred cccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 531 ~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
.....+....++++.|+..++.++++.|++.|++++..|..|+||||.|+..++.+++++|+++|+++|.+|..|+|+
T Consensus 34 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 111 (165)
T 3twr_A 34 NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTP 111 (165)
T ss_dssp TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred CccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCH
Confidence 344455566789999999999999999999999999999999999999999999999999999999999999999884
No 98
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=98.88 E-value=2.2e-09 Score=94.51 Aligned_cols=77 Identities=19% Similarity=0.220 Sum_probs=69.5
Q ss_pred cccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCCh-HhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRS-PLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 531 ~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t-~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
.++..+....++++.|+ .++.++++.|++.|++++..|..|.| |||+|+..|+.+++++|+++|+++|.+|..|+|+
T Consensus 37 ~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tp 114 (156)
T 1bi7_B 37 NPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLP 114 (156)
T ss_dssp CTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCH
T ss_pred CCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCH
Confidence 34445556778898875 89999999999999999999999999 9999999999999999999999999999999884
No 99
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=98.88 E-value=5.4e-09 Score=91.93 Aligned_cols=76 Identities=28% Similarity=0.370 Sum_probs=53.9
Q ss_pred cccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCC
Q 007326 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQ 607 (608)
Q Consensus 531 ~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t 607 (608)
.++..+....++++.|+..++.+.++.|++.|++++..|..|.||||.|+..|+.+++++|+++ ++++.+|..|.|
T Consensus 60 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t 135 (156)
T 1bd8_A 60 SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLT 135 (156)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCC
T ss_pred CCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCC
Confidence 3444455566677777777777777777777777777777777777777777777777777777 777777777766
No 100
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.87 E-value=5.6e-09 Score=112.40 Aligned_cols=84 Identities=21% Similarity=0.299 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCCCCcccccccccCCCCcccccccchHHHHHHHHHHHhhhhcccccCCcc
Q 007326 208 RIVKLIAVELYCSHIAACIFYYLAT-TLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVH 286 (608)
Q Consensus 208 ~~~~l~~~~~~~~h~~ac~~~~~~~-~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~y~~~~t~ttvGygdi~ 286 (608)
.+...++.+++++++++|+++++.. .++ ..| .|.+|+||+++|+||+||||++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-----~~~---------------------~~~~~~y~~~~t~tTvGygd~~ 72 (565)
T 4gx0_A 19 VLLLYCAFLLVMLLAYASIFRYLMWHLEG-----RAY---------------------SFMAGIYWTITVMTTLGFGDIT 72 (565)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCC---------------------CHHHHHHHHHHHHTTCCCCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CCC---------------------chhhhhheeeeeeeeecCCCcC
Confidence 4556666666777777777766543 111 001 3569999999999999999999
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 007326 287 AVNLREMVFIMIYVSFDMILGAYLIGN-MTAL 317 (608)
Q Consensus 287 p~~~~e~~~~~~~~~~g~~~~a~~i~~-i~~~ 317 (608)
|.|..+++++++++++|+.++++.++. +.+.
T Consensus 73 p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 104 (565)
T 4gx0_A 73 FESDAGYLFASIVTVSGVIFLDIILPFGFVSM 104 (565)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999887 4443
No 101
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=98.87 E-value=1.1e-09 Score=94.00 Aligned_cols=76 Identities=24% Similarity=0.382 Sum_probs=69.9
Q ss_pred ccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCC-CCCC
Q 007326 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNS-IMQM 608 (608)
Q Consensus 532 ~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~-g~t~ 608 (608)
++..+....++++.|+..++.+.++.|++.|++++..|..|+||||.|+. ++.+++++|+++|+++|.+|.. |+|+
T Consensus 5 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~ 81 (136)
T 1d9s_A 5 IHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRP 81 (136)
T ss_dssp CSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCH
T ss_pred ccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCH
Confidence 34455567789999999999999999999999999999999999999999 9999999999999999999998 8874
No 102
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=98.87 E-value=3.8e-09 Score=100.38 Aligned_cols=77 Identities=27% Similarity=0.310 Sum_probs=71.3
Q ss_pred cccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCC-C
Q 007326 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIM-Q 607 (608)
Q Consensus 531 ~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~-t 607 (608)
.++..+....+++|.|+..|+.++++.|+++|++++..|..|+||||.|+..|+.+++++|+++|+|++.+|..|. |
T Consensus 62 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t 139 (239)
T 1ycs_B 62 DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQT 139 (239)
T ss_dssp SCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCC
T ss_pred CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcc
Confidence 4555566788999999999999999999999999999999999999999999999999999999999999998876 5
No 103
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=98.86 E-value=2.2e-09 Score=92.24 Aligned_cols=73 Identities=27% Similarity=0.391 Sum_probs=68.8
Q ss_pred hhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 536 EAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 536 ~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
+....++++.|+..++.+.++.|++.|++++..|..|.||||.|+..++.+++++|+++|++++.+|..|.|+
T Consensus 7 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~ 79 (137)
T 3c5r_A 7 NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSP 79 (137)
T ss_dssp CTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCH
Confidence 4556789999999999999999999999999999999999999999999999999999999999999999873
No 104
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=98.85 E-value=4.7e-09 Score=98.90 Aligned_cols=78 Identities=28% Similarity=0.260 Sum_probs=71.1
Q ss_pred cccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccC-CCCCCC
Q 007326 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKG-NSIMQM 608 (608)
Q Consensus 531 ~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~-~~g~t~ 608 (608)
.++..+....++++.|+..++.++++.|++.|++++..|..|+||||+|+..|+.+++++|+++|+|++.++ ..|+|+
T Consensus 46 ~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tp 124 (229)
T 2vge_A 46 DPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATA 124 (229)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCT
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCH
Confidence 344456677899999999999999999999999999999999999999999999999999999999999997 589884
No 105
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=98.85 E-value=4e-09 Score=94.46 Aligned_cols=77 Identities=19% Similarity=0.182 Sum_probs=66.2
Q ss_pred ccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 532 ~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
++..+....++++.|+..++.++++.|++.|++++..|..|.||||.|+..++.+++++|+++|+|++.+|..|.|+
T Consensus 62 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~ 138 (172)
T 3v30_A 62 PHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTP 138 (172)
T ss_dssp TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred chhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH
Confidence 34444556788889999999999999999999999999999999999999999999999999999999999888873
No 106
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=98.85 E-value=6.2e-09 Score=92.96 Aligned_cols=76 Identities=33% Similarity=0.452 Sum_probs=67.8
Q ss_pred ccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCC
Q 007326 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQ 607 (608)
Q Consensus 532 ~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t 607 (608)
++..+....++++.|+..++.++++.|++.|++++..|..|.||||.|+..++.+++++|+++|+|++.+|..|.|
T Consensus 73 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t 148 (169)
T 2y1l_E 73 VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKT 148 (169)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCC
Confidence 4444556778899999999999999999999999999999999999999999999999999999999999998887
No 107
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.84 E-value=6.6e-09 Score=98.19 Aligned_cols=54 Identities=19% Similarity=0.304 Sum_probs=49.7
Q ss_pred HHHHHHHHhhhhcccccCCcccCChh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007326 266 YITSMYASVVTMTTVGYGDVHAVNLR-------EMVFIMIYVSFDMILGAYLIGNMTALIV 319 (608)
Q Consensus 266 Y~~s~y~~~~t~ttvGygdi~p~~~~-------e~~~~~~~~~~g~~~~a~~i~~i~~~~~ 319 (608)
|++|+||+++|+|||||||+.|.+.. +++++++++++|+.+++++++.+.++..
T Consensus 202 ~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~ 262 (280)
T 3ukm_A 202 FLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHE 262 (280)
T ss_dssp HHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHH
T ss_pred hhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56999999999999999999999885 5999999999999999999999987654
No 108
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.84 E-value=4.1e-09 Score=99.60 Aligned_cols=55 Identities=15% Similarity=0.370 Sum_probs=51.2
Q ss_pred HHHHHHHHHhhhhcccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007326 265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIV 319 (608)
Q Consensus 265 ~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~ 319 (608)
.|.+|+||+++|+|||||||++|.|..+|+++++.+++|+.++++.++.++..+.
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~ 147 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRIT 147 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4679999999999999999999999999999999999999999999998877554
No 109
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=98.84 E-value=4.1e-09 Score=98.86 Aligned_cols=78 Identities=22% Similarity=0.274 Sum_probs=72.1
Q ss_pred cccchhhhhhhhhhhhhhcCCHHHHHHHHHc-CCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRA-GADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 531 ~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~-gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
.++..+....++++.|+..++.++++.|++. |++++..|..|+||||+|+..|+.+++++|+++||+++.+|..|.|.
T Consensus 98 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~ 176 (222)
T 3ehr_A 98 GVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLA 176 (222)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCH
T ss_pred CccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCH
Confidence 3445566788999999999999999999999 99999999999999999999999999999999999999999999883
No 110
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=98.83 E-value=5e-09 Score=93.32 Aligned_cols=77 Identities=19% Similarity=0.235 Sum_probs=69.5
Q ss_pred ccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 532 ~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
++..+....++++.|+..++.++++.|++.|++++..|..|.||||.|+..|+.+++++|+++|+|++.+|..|.|+
T Consensus 62 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 138 (167)
T 3v31_A 62 PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNS 138 (167)
T ss_dssp TTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred CCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence 34445566789999999999999999999999999999999999999999999999999999999999999999873
No 111
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=98.83 E-value=6.4e-09 Score=87.50 Aligned_cols=77 Identities=34% Similarity=0.492 Sum_probs=68.7
Q ss_pred ccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 532 ~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
++..+....++++.|+..++.+.++.|++.|++++..|..|.||||.|+..++.+++++|+++|++++.+|..|.|+
T Consensus 28 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~ 104 (126)
T 1n0r_A 28 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTP 104 (126)
T ss_dssp TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred CCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCH
Confidence 33444566788999999999999999999999999999999999999999999999999999999999999999873
No 112
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=98.83 E-value=7.7e-09 Score=92.37 Aligned_cols=78 Identities=32% Similarity=0.414 Sum_probs=71.8
Q ss_pred cccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 531 ~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
.++..+....++++.|+..++.+.++.|++.|++++..|..|.||||.|+..|+.+++++|+++|++++.+|..|.|+
T Consensus 39 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~ 116 (169)
T 2y1l_E 39 DVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTP 116 (169)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence 344555667889999999999999999999999999999999999999999999999999999999999999999873
No 113
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=98.83 E-value=6.9e-09 Score=90.95 Aligned_cols=73 Identities=32% Similarity=0.393 Sum_probs=69.0
Q ss_pred hhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 536 EAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 536 ~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
+....++++.|+..++.+.++.|++.|++++..|..|.||||.|+..|+.+++++|+++|+++|.+|..|.|+
T Consensus 31 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 103 (153)
T 1awc_B 31 DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTA 103 (153)
T ss_dssp CTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCH
Confidence 4456789999999999999999999999999999999999999999999999999999999999999999884
No 114
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=98.83 E-value=4.6e-09 Score=96.01 Aligned_cols=77 Identities=21% Similarity=0.258 Sum_probs=70.2
Q ss_pred ccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 532 ~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
++..+....++++.|+..+..++++.|++.|++++..|..|.||||.|+..|+.+++++|+++|+|++.+|..|.|+
T Consensus 94 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~ 170 (192)
T 2rfm_A 94 VNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTA 170 (192)
T ss_dssp TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBH
T ss_pred CCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCH
Confidence 44455667889999999999999999999999999999999999999999999999999999999999999999873
No 115
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=98.83 E-value=4.6e-09 Score=102.27 Aligned_cols=71 Identities=27% Similarity=0.263 Sum_probs=63.2
Q ss_pred hhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 538 ELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 538 ~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
...+++|.|+..+..++++.|+++|++++.+|..|.||||+|+..++.+++++|+++|||++.+|..|.|+
T Consensus 191 ~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tp 261 (282)
T 1oy3_D 191 CGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSP 261 (282)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC------
T ss_pred CCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCccccc
Confidence 37789999999999999999999999999999999999999999999999999999999999999999885
No 116
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=98.82 E-value=4.9e-09 Score=101.96 Aligned_cols=75 Identities=27% Similarity=0.304 Sum_probs=70.2
Q ss_pred chhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHH-cCCCCCccCCCCCCC
Q 007326 534 KHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQ-KGVDINLKGNSIMQM 608 (608)
Q Consensus 534 ~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~-~gad~~~~~~~g~t~ 608 (608)
..+....++++.|+..|..++++.|++.|+++|..|..|+||||+|+..|+.+++++|++ +|+|+|.+|..|.|+
T Consensus 178 ~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~Tp 253 (276)
T 4hbd_A 178 KASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTA 253 (276)
T ss_dssp CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCH
Confidence 344567789999999999999999999999999999999999999999999999999999 899999999999984
No 117
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=98.82 E-value=5.6e-09 Score=91.81 Aligned_cols=77 Identities=25% Similarity=0.350 Sum_probs=70.5
Q ss_pred cccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 531 ~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
..+..+....++++. +..++.+.++.|++.|++++..|..|.||||.|+..|+.+++++|+++|+++|.+|..|+|+
T Consensus 28 ~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 104 (156)
T 1bd8_A 28 HPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALP 104 (156)
T ss_dssp CTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCH
T ss_pred CccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcH
Confidence 344455667889999 99999999999999999999999999999999999999999999999999999999999884
No 118
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=98.81 E-value=8.1e-09 Score=92.45 Aligned_cols=77 Identities=26% Similarity=0.342 Sum_probs=71.2
Q ss_pred ccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 532 ~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
++..+....++++.|+..++.+.++.|++.|++++..|..|.||||.|+..++.+++++|+++|+++|.+|..|+|+
T Consensus 29 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 105 (172)
T 3v30_A 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTP 105 (172)
T ss_dssp GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCH
T ss_pred ccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence 34445667789999999999999999999999999999999999999999999999999999999999999999884
No 119
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=98.81 E-value=6.7e-09 Score=91.92 Aligned_cols=77 Identities=26% Similarity=0.313 Sum_probs=65.9
Q ss_pred ccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCC-CCccCCCCCCC
Q 007326 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVD-INLKGNSIMQM 608 (608)
Q Consensus 532 ~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad-~~~~~~~g~t~ 608 (608)
++..+....++++.|+..++.+.++.|++.|++++..|..|.||||.|+..|+.+++++|+++|++ ++.+|..|.|+
T Consensus 63 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~ 140 (162)
T 1ihb_A 63 PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTA 140 (162)
T ss_dssp TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCH
T ss_pred CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcH
Confidence 344455667889999999999999999999999999999999999999999999999999999988 58888888873
No 120
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=98.81 E-value=6.7e-09 Score=91.92 Aligned_cols=77 Identities=19% Similarity=0.259 Sum_probs=70.6
Q ss_pred cccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 531 ~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
.++..+....++++.|+. ++.+.++.|++.|++++..|..|.||||.|+..|+.+++++|+++|+++|.+|..|.|+
T Consensus 30 ~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 106 (162)
T 1ihb_A 30 NVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLP 106 (162)
T ss_dssp CTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred CccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence 344555667889999998 99999999999999999999999999999999999999999999999999999999884
No 121
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=98.80 E-value=7.4e-09 Score=92.21 Aligned_cols=77 Identities=32% Similarity=0.389 Sum_probs=71.7
Q ss_pred ccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 532 ~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
++..+....++++.|+..++.+.++.|++.|++++..+..|.||||.|+..++.+++++|+++|+++|.+|..|.|+
T Consensus 29 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 105 (167)
T 3v31_A 29 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTP 105 (167)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCH
T ss_pred cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCH
Confidence 45555677889999999999999999999999999999999999999999999999999999999999999999884
No 122
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=98.79 E-value=2.9e-09 Score=89.98 Aligned_cols=109 Identities=17% Similarity=0.192 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhheecc--CCCcCeehHHHHHHHHHHHHHHhhceeeEEeCCCcEEeeccHHHHHHHhhccc
Q 007326 75 AWTKFILIWAVYSSIFTPVEFGFFR--GLSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRSSF 152 (608)
Q Consensus 75 ~w~~~~~~~~~~~~~~~p~~~~f~~--~~~~~~~~~~~~~~~if~~d~~l~f~t~~~~~~~~~~i~~~~~i~~~y~~~~f 152 (608)
.++.+++++++.+.+..-+...... .....+..+|.++.++|++|+++|++++.. .++|++ |-
T Consensus 7 ~f~~~i~~lIlls~~~~~~et~~~~~~~~~~~l~~~d~~~~~iFt~E~~lRl~~~~~--------------~~~y~~-~n 71 (132)
T 1ors_C 7 LVELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKSGD--------------PAGYVK-KT 71 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--------------TTTTTT-TC
T ss_pred HHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--------------HHHHHH-HH
Confidence 4667777777776666655432211 112346779999999999999999887521 178999 77
Q ss_pred hhHHHhhccHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007326 153 IIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFFHKMEK 198 (608)
Q Consensus 153 ~iDll~~lP~~~~~~~~~~~~~~~~l~llrl~rl~r~~~~~~~~~~ 198 (608)
++|+++++|+++.+...+....++.+|++|++|++|+.++...++.
T Consensus 72 iiDllailp~~~~~~~~~~l~~lr~lRllRv~Rvlkl~r~~~~l~~ 117 (132)
T 1ors_C 72 LYEIPALVPAGLLALIEGHLAGLGLFRLVRLLRFLRILLIISRGSK 117 (132)
T ss_dssp GGGTGGGSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 9999999999876544111223455667777777777776666544
No 123
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=98.79 E-value=1e-08 Score=87.76 Aligned_cols=101 Identities=17% Similarity=0.166 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhheeccC--CCcCeehHHHHHHHHHHHHHHhhceeeEEeCCCcEEeeccHHHHHHHhhccc
Q 007326 75 AWTKFILIWAVYSSIFTPVEFGFFRG--LSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRSSF 152 (608)
Q Consensus 75 ~w~~~~~~~~~~~~~~~p~~~~f~~~--~~~~~~~~~~~~~~if~~d~~l~f~t~~~~~~~~~~i~~~~~i~~~y~~~~f 152 (608)
.|+.++.++++.+++++-+....... ....+..+|.++.++|++|+++|+..+.. .++|+++ -
T Consensus 22 ~f~~~i~~lil~sv~~v~~et~~~i~~~~~~~~~~id~~~~~iF~~Ey~lRl~~a~~--------------k~~f~~~-~ 86 (147)
T 2kyh_A 22 LVELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKSGD--------------PAGYVKK-T 86 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--------------HHHHHHH-S
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCc--------------HHHHHHH-H
Confidence 46666777777666666554433221 12346789999999999999999887632 2789998 6
Q ss_pred hhHHHhhccHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHH
Q 007326 153 IIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFF 193 (608)
Q Consensus 153 ~iDll~~lP~~~~~~~~~~~~~~~~l~llrl~rl~r~~~~~ 193 (608)
++|+++++|++..+... ..++++|++|++|++|+.+..
T Consensus 87 iiDllailP~~~~~~~~---~~lr~lRvlRllRv~Rllrl~ 124 (147)
T 2kyh_A 87 LYEIPALVPAGLLALIE---GHLAGLGLFRLVRLLRFLRIL 124 (147)
T ss_dssp TTTHHHHCCHHHHHHHH---HHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998665432 224444444444444444433
No 124
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=98.79 E-value=1.7e-08 Score=101.79 Aligned_cols=72 Identities=25% Similarity=0.366 Sum_probs=69.1
Q ss_pred hhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 537 ~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
....+++|.|+..++.++++.|+++|+++|..|..|+||||+|+..|+.+++++|+++|||++.+|..|.|+
T Consensus 233 ~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~Tp 304 (368)
T 3jue_A 233 QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDP 304 (368)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred cCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCH
Confidence 667789999999999999999999999999999999999999999999999999999999999999999883
No 125
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=98.78 E-value=8.6e-09 Score=94.15 Aligned_cols=78 Identities=23% Similarity=0.355 Sum_probs=72.0
Q ss_pred cccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 531 ~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
.++..+....++++.|+..++.+.++.|++.|++++..|..|.||||.|+..++.+++++|+++|++++.+|..|.|+
T Consensus 60 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 137 (192)
T 2rfm_A 60 KLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETP 137 (192)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCH
T ss_pred ccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCH
Confidence 344555667889999999999999999999999999999999999999999999999999999999999999999884
No 126
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=98.77 E-value=8.6e-09 Score=97.09 Aligned_cols=74 Identities=22% Similarity=0.295 Sum_probs=69.3
Q ss_pred hhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 535 HEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 535 ~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
.+....++++.|+..|+.+.++.|++.|++++..|..|+||||+|+..|+.+++++|+++|+|+|.+|..|+|+
T Consensus 17 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tp 90 (229)
T 2vge_A 17 ARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTP 90 (229)
T ss_dssp TTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred cccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCH
Confidence 34556778999999999999999999999999999999999999999999999999999999999999999984
No 127
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=98.77 E-value=2.8e-09 Score=96.83 Aligned_cols=82 Identities=10% Similarity=-0.015 Sum_probs=71.0
Q ss_pred cccccccchhhhhhhhhhhhhhcCC------HHHHHHHHHcCCCCCCCCCCCC-hHhhHHHhcC-----cHHHHHHHHH-
Q 007326 527 DITFHISKHEAELALKVNSAAYHGD------LYQLEGLIRAGADPNRTDYDGR-SPLHLAASRG-----YEEIMTFLIQ- 593 (608)
Q Consensus 527 ~~~~~~~~~~~~~~~~l~~aa~~g~------~~~~~~Ll~~gad~~~~d~~g~-t~L~~a~~~~-----~~~~v~~Ll~- 593 (608)
+...+++..+....+|+|.++..+. .++++.|+++|+++|.+|..|. ||||+|+..+ +.+++++|++
T Consensus 63 ~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~ 142 (186)
T 3t8k_A 63 NKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQ 142 (186)
T ss_dssp HTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTS
T ss_pred HCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHh
Confidence 3455667777888999999998876 5789999999999999999999 9999999843 4579999999
Q ss_pred cCCCCCccCCCCCCC
Q 007326 594 KGVDINLKGNSIMQM 608 (608)
Q Consensus 594 ~gad~~~~~~~g~t~ 608 (608)
+|||+|.+|..|.|+
T Consensus 143 ~gad~~~~d~~G~Tp 157 (186)
T 3t8k_A 143 SGLQLLIKDKWGLTA 157 (186)
T ss_dssp TTCCTTCCCTTSCCH
T ss_pred cCCCCcccCCCCCCH
Confidence 999999999999984
No 128
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=98.77 E-value=1.2e-08 Score=96.74 Aligned_cols=72 Identities=26% Similarity=0.306 Sum_probs=68.8
Q ss_pred hhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 537 ~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
....++++.|+..++.+.++.|++.|++++..|..|.||||.|+..|+.+++++|+++|+|++.+|..|.|+
T Consensus 148 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tp 219 (241)
T 1k1a_A 148 KSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTP 219 (241)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCT
T ss_pred cCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCH
Confidence 456789999999999999999999999999999999999999999999999999999999999999999985
No 129
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=98.77 E-value=9.5e-09 Score=98.49 Aligned_cols=78 Identities=17% Similarity=0.152 Sum_probs=72.0
Q ss_pred cccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 531 ~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
.++..+....++++.|+..++.++++.|++.|++++..|..|.||||.|+..|+.+++++|+++|||++.+|..|.|+
T Consensus 149 ~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tp 226 (253)
T 1yyh_A 149 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLP 226 (253)
T ss_dssp CTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCH
Confidence 344455667889999999999999999999999999999999999999999999999999999999999999999884
No 130
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.77 E-value=6.1e-09 Score=110.31 Aligned_cols=73 Identities=19% Similarity=0.219 Sum_probs=64.1
Q ss_pred hhhhhhhhhhh---hhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 536 EAELALKVNSA---AYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 536 ~~~~~~~l~~a---a~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
+....+++|.| +..|+.++++.|+++|+++|..|..|+||||+|+..|+.+++++|+++|||+|++|..|+|+
T Consensus 168 ~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tp 243 (497)
T 3lvq_E 168 QAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETA 243 (497)
T ss_dssp CCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCH
T ss_pred ccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence 45677888888 44888999999999999999999999999999999999999999999999999999999873
No 131
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=98.76 E-value=9e-09 Score=101.25 Aligned_cols=73 Identities=18% Similarity=0.191 Sum_probs=68.0
Q ss_pred hhhhhhhhhhhhhc---CCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 536 EAELALKVNSAAYH---GDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 536 ~~~~~~~l~~aa~~---g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
+....++++.|+.. +..+++++|++.|+++|..|..|+||||.|+..|+.+++++|+++|||++.+|..|.|+
T Consensus 187 ~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~Tp 262 (301)
T 2b0o_E 187 QAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETA 262 (301)
T ss_dssp CSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCH
T ss_pred CCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence 45667899999986 89999999999999999999999999999999999999999999999999999999984
No 132
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=98.76 E-value=1.3e-08 Score=102.52 Aligned_cols=78 Identities=22% Similarity=0.233 Sum_probs=72.2
Q ss_pred cccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 531 ~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
.++..+....++++.|+..++.++++.|+++|++++..|..|.||||.|+..|+.+++++|+++|||++.+|..|.|.
T Consensus 239 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~ta 316 (351)
T 3utm_A 239 NVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTA 316 (351)
T ss_dssp CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred CcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCh
Confidence 344455667889999999999999999999999999999999999999999999999999999999999999999883
No 133
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=98.75 E-value=1e-08 Score=97.00 Aligned_cols=76 Identities=26% Similarity=0.314 Sum_probs=67.3
Q ss_pred cchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCC-CCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 533 SKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDY-DGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 533 ~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~-~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
...+....++++.|+..+..++++.|++.|++++..+. .|.||||+|+..|+.+++++|+++|||++.+|..|+|+
T Consensus 111 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tp 187 (236)
T 1ikn_D 111 KATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 187 (236)
T ss_dssp GCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCG
T ss_pred hccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCH
Confidence 33445667889999999999999999999999999987 89999999999999999999999999999999999874
No 134
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=98.75 E-value=1.5e-08 Score=99.73 Aligned_cols=74 Identities=32% Similarity=0.343 Sum_probs=69.8
Q ss_pred hhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 535 HEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 535 ~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
.+....++++.|+..|+.++++.|++.|++++..|..|.||||+|+..|+.+++++|+++|||++.+|..|.|+
T Consensus 195 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~ 268 (299)
T 1s70_B 195 HAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTA 268 (299)
T ss_dssp CTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCT
T ss_pred hcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999985
No 135
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=98.75 E-value=1.3e-08 Score=95.55 Aligned_cols=78 Identities=23% Similarity=0.295 Sum_probs=71.7
Q ss_pred cccchhhhhhhhhhhhhhcCCHHHHHHHHHcC-CCCCCCCCCCChHhhHHHhcCcHHHHHHHH-HcCCCCCccCCCCCCC
Q 007326 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAG-ADPNRTDYDGRSPLHLAASRGYEEIMTFLI-QKGVDINLKGNSIMQM 608 (608)
Q Consensus 531 ~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~g-ad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll-~~gad~~~~~~~g~t~ 608 (608)
.++..+....++++.|+..+..+.++.|++.| ++++..|..|+||||.|+..|+.+++++|+ ++|+|++.+|..|.|+
T Consensus 132 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~ 211 (228)
T 2dzn_A 132 SVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKA 211 (228)
T ss_dssp CSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBG
T ss_pred CccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcH
Confidence 34455566788999999999999999999999 999999999999999999999999999999 8999999999999884
No 136
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=98.74 E-value=1.5e-08 Score=97.16 Aligned_cols=74 Identities=19% Similarity=0.193 Sum_probs=69.3
Q ss_pred hhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCC-------------CChHhhHHHhcCcHHHHHHHHH---cCCCC
Q 007326 535 HEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYD-------------GRSPLHLAASRGYEEIMTFLIQ---KGVDI 598 (608)
Q Consensus 535 ~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~-------------g~t~L~~a~~~~~~~~v~~Ll~---~gad~ 598 (608)
.+....++++.|+..++.++++.|++.|++++..+.. |.||||.|+..|+.+++++|++ +|+|+
T Consensus 86 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~ 165 (256)
T 2etb_A 86 EFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASL 165 (256)
T ss_dssp TTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCT
T ss_pred ccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCc
Confidence 3456789999999999999999999999999999986 9999999999999999999999 99999
Q ss_pred CccCCCCCCC
Q 007326 599 NLKGNSIMQM 608 (608)
Q Consensus 599 ~~~~~~g~t~ 608 (608)
|.+|..|+|+
T Consensus 166 n~~d~~g~Tp 175 (256)
T 2etb_A 166 EATDSLGNTV 175 (256)
T ss_dssp TCCCTTSCCH
T ss_pred CccCCCCCCH
Confidence 9999999984
No 137
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=98.74 E-value=1.5e-08 Score=95.55 Aligned_cols=76 Identities=26% Similarity=0.326 Sum_probs=70.6
Q ss_pred cchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 533 SKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 533 ~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
+..+....++++.|+..++.+.++.|++.|++++..|..|.||||.|+..++.+++++|+++|+|++.+|..|.|+
T Consensus 133 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~ 208 (231)
T 3aji_A 133 DAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTP 208 (231)
T ss_dssp TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCH
T ss_pred CCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCH
Confidence 3445567789999999999999999999999999999999999999999999999999999999999999999884
No 138
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=98.74 E-value=1.2e-08 Score=98.24 Aligned_cols=77 Identities=22% Similarity=0.204 Sum_probs=70.5
Q ss_pred ccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCC--------------CCCChHhhHHHhcCcHHHHHHHHH---c
Q 007326 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTD--------------YDGRSPLHLAASRGYEEIMTFLIQ---K 594 (608)
Q Consensus 532 ~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d--------------~~g~t~L~~a~~~~~~~~v~~Ll~---~ 594 (608)
....+....++++.|+..|+.++++.|+++|++++..+ ..|.||||.|+..|+.+++++|++ +
T Consensus 86 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ 165 (260)
T 3jxi_A 86 FRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHK 165 (260)
T ss_dssp BCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSC
T ss_pred ccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhcccc
Confidence 33444567889999999999999999999999999999 689999999999999999999999 9
Q ss_pred CCCCCccCCCCCCC
Q 007326 595 GVDINLKGNSIMQM 608 (608)
Q Consensus 595 gad~~~~~~~g~t~ 608 (608)
|+|+|.+|..|+|+
T Consensus 166 ga~~~~~d~~g~Tp 179 (260)
T 3jxi_A 166 QADLRRQDSRGNTV 179 (260)
T ss_dssp CCCTTCCCTTSCCH
T ss_pred CCCCcccCCCCCcH
Confidence 99999999999984
No 139
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=98.74 E-value=1.6e-08 Score=101.37 Aligned_cols=73 Identities=25% Similarity=0.318 Sum_probs=66.1
Q ss_pred hhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCC-CCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCC
Q 007326 535 HEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDY-DGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQ 607 (608)
Q Consensus 535 ~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~-~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t 607 (608)
...+..++++.|+..|+.++++.|+++|+++|.++. .|+||||+|+..|+.+++++|+++||+++.++..|.+
T Consensus 21 ~~~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~ 94 (337)
T 4g8k_A 21 AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGAT 94 (337)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC
T ss_pred CCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCc
Confidence 345567889999999999999999999999998875 5999999999999999999999999999998887765
No 140
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=98.74 E-value=1.2e-08 Score=92.41 Aligned_cols=72 Identities=22% Similarity=0.315 Sum_probs=67.5
Q ss_pred hhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccC-CCCCCC
Q 007326 536 EAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKG-NSIMQM 608 (608)
Q Consensus 536 ~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~-~~g~t~ 608 (608)
+....++++.|+..|+.+.++.|++ |++++..|..|+||||+|+..|+.+++++|+++|+++|.+| ..|+|+
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tp 113 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTA 113 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCH
Confidence 3566789999999999999999999 99999999999999999999999999999999999999998 889874
No 141
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=98.74 E-value=1.4e-08 Score=98.88 Aligned_cols=78 Identities=24% Similarity=0.313 Sum_probs=71.4
Q ss_pred cccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCC-CChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYD-GRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 531 ~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~-g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
.++..+....++++.|+..++.++++.|+++|++++..+.. |.||||.|+..|+.+++++|+++|+|+|.+|..|.|+
T Consensus 150 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tp 228 (282)
T 1oy3_D 150 QLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTP 228 (282)
T ss_dssp GTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred cCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCH
Confidence 34555667789999999999999999999999999999854 9999999999999999999999999999999999984
No 142
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=98.73 E-value=8.6e-09 Score=97.88 Aligned_cols=71 Identities=24% Similarity=0.328 Sum_probs=67.2
Q ss_pred hhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 538 ELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 538 ~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
...++++.|+..|+.+.++.|++.|++++..|..|.||||.|+..|+.+++++|+++|+|+|.+|..|+|+
T Consensus 36 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tp 106 (239)
T 1ycs_B 36 LPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTP 106 (239)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCH
T ss_pred hhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCH
Confidence 44678999999999999999999999999999999999999999999999999999999999999999984
No 143
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=98.72 E-value=1.7e-08 Score=97.23 Aligned_cols=77 Identities=25% Similarity=0.289 Sum_probs=70.1
Q ss_pred cccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 531 ~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
.++..+....++++.|+..++.+.++.|++.|++++. +..|.||||.|+..++.+++++|+++|||++.+|..|.|+
T Consensus 126 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tp 202 (261)
T 2xai_A 126 NIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRP 202 (261)
T ss_dssp CTTCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCTTC-CBTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCG
T ss_pred CCCcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCChHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCh
Confidence 3444556677999999999999999999999999996 8899999999999999999999999999999999999984
No 144
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=98.72 E-value=1e-08 Score=99.22 Aligned_cols=77 Identities=29% Similarity=0.462 Sum_probs=70.8
Q ss_pred ccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 532 ~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
....+....++++.++..+..++++.|++.|++++..|..|+||||+|+..|+.+++++|+++|||+|.+|..|+|+
T Consensus 112 ~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~ 188 (269)
T 4b93_B 112 AGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTA 188 (269)
T ss_dssp TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBH
T ss_pred cCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcH
Confidence 34445566788999999999999999999999999999999999999999999999999999999999999999884
No 145
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=98.72 E-value=2e-08 Score=93.99 Aligned_cols=77 Identities=17% Similarity=0.152 Sum_probs=69.5
Q ss_pred ccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 532 ~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
++..+....++++.|+..++.+.++.|++.|++++..|..|.||||.|+..++.+++++|+++|+|++.+|..|.|+
T Consensus 118 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~ 194 (223)
T 2f8y_A 118 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLP 194 (223)
T ss_dssp TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred CcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCH
Confidence 44445667789999999999999999999999999999999999999999999999999999999999999999873
No 146
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=98.71 E-value=1.7e-08 Score=95.43 Aligned_cols=77 Identities=25% Similarity=0.334 Sum_probs=71.0
Q ss_pred ccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 532 ~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
++..+....++++.|+..+..+.++.|++.|++++..|..|.||||.|+..++.+++++|+++|+|++.+|..|.|+
T Consensus 137 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~ 213 (237)
T 3b7b_A 137 INIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETP 213 (237)
T ss_dssp TTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCH
T ss_pred CCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCH
Confidence 33445567789999999999999999999999999999999999999999999999999999999999999999984
No 147
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=98.70 E-value=2.1e-08 Score=98.54 Aligned_cols=77 Identities=26% Similarity=0.371 Sum_probs=71.0
Q ss_pred ccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 532 ~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
++..+....++++.|+..|+.++++.|++.|++++..|..|.||||+|+..|+.+++++|+++|++++..|..|.|+
T Consensus 66 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~ 142 (299)
T 1s70_B 66 INYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTP 142 (299)
T ss_dssp TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred CcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCH
Confidence 44455667899999999999999999999999999999999999999999999999999999999999999999873
No 148
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=98.69 E-value=3.1e-08 Score=93.03 Aligned_cols=78 Identities=22% Similarity=0.141 Sum_probs=71.8
Q ss_pred cccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcC-CCCCccCCCCCCC
Q 007326 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKG-VDINLKGNSIMQM 608 (608)
Q Consensus 531 ~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~g-ad~~~~~~~g~t~ 608 (608)
.++..+....++++.|+..+..+.++.|++.|++++..|..|.||||.|+..|+.+++++|+++| +++|.+|..|+|+
T Consensus 99 ~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~ 177 (228)
T 2dzn_A 99 DLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTP 177 (228)
T ss_dssp CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCH
T ss_pred ccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCH
Confidence 44455566788999999999999999999999999999999999999999999999999999999 9999999999984
No 149
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=98.68 E-value=2.6e-08 Score=93.90 Aligned_cols=75 Identities=25% Similarity=0.315 Sum_probs=66.8
Q ss_pred chhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCC-------------CCChHhhHHHhcCcHHHHHHHHHcCCCCCc
Q 007326 534 KHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDY-------------DGRSPLHLAASRGYEEIMTFLIQKGVDINL 600 (608)
Q Consensus 534 ~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~-------------~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~ 600 (608)
..+....++++.|+..++.++++.|+++|++++..+. .|.||||.|+..|+.+++++|+++|+|+|.
T Consensus 70 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~ 149 (232)
T 2rfa_A 70 SELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRA 149 (232)
T ss_dssp STTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred ccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence 3445677899999999999999999999999988865 799999999999999999999999999999
Q ss_pred cCCCCCCC
Q 007326 601 KGNSIMQM 608 (608)
Q Consensus 601 ~~~~g~t~ 608 (608)
+|..|+|+
T Consensus 150 ~d~~g~t~ 157 (232)
T 2rfa_A 150 QDSLGNTV 157 (232)
T ss_dssp CCTTSCCH
T ss_pred CCCCCCCH
Confidence 99999884
No 150
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=98.67 E-value=3e-08 Score=83.35 Aligned_cols=70 Identities=37% Similarity=0.506 Sum_probs=66.1
Q ss_pred hhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 539 LALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 539 ~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
+.++++.|+..++.+.++.|++.|++++..+..|.||||.|+..++.+++++|+++|++++.+|..|.|+
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~ 71 (126)
T 1n0r_A 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTP 71 (126)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred CccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcH
Confidence 3468899999999999999999999999999999999999999999999999999999999999999873
No 151
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=98.67 E-value=3.6e-08 Score=90.57 Aligned_cols=78 Identities=23% Similarity=0.262 Sum_probs=70.6
Q ss_pred cccchhhhhhhhhhhhhhcCCHHHHHHHHHcC-CCCCCCCCCCChHhhHHHhcCc-----HHHHHHHHHcCCCCCccCCC
Q 007326 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAG-ADPNRTDYDGRSPLHLAASRGY-----EEIMTFLIQKGVDINLKGNS 604 (608)
Q Consensus 531 ~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~g-ad~~~~d~~g~t~L~~a~~~~~-----~~~v~~Ll~~gad~~~~~~~ 604 (608)
.++..+....++++.|+..++.+.++.|++.| ++++..|..|.||||.|+..+. .+++++|+++|+|++.+|..
T Consensus 98 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~ 177 (201)
T 3hra_A 98 DLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNS 177 (201)
T ss_dssp CTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTT
T ss_pred ccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCC
Confidence 34445556778999999999999999999999 9999999999999999999888 99999999999999999999
Q ss_pred CCCC
Q 007326 605 IMQM 608 (608)
Q Consensus 605 g~t~ 608 (608)
|.|+
T Consensus 178 g~t~ 181 (201)
T 3hra_A 178 GRTA 181 (201)
T ss_dssp SCCH
T ss_pred CCCH
Confidence 9884
No 152
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=98.67 E-value=3.4e-08 Score=95.75 Aligned_cols=75 Identities=23% Similarity=0.231 Sum_probs=69.9
Q ss_pred chhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCC--------------CCChHhhHHHhcCcHHHHHHHHH---cCC
Q 007326 534 KHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDY--------------DGRSPLHLAASRGYEEIMTFLIQ---KGV 596 (608)
Q Consensus 534 ~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~--------------~g~t~L~~a~~~~~~~~v~~Ll~---~ga 596 (608)
..+....++++.|+..++.++++.|+++|++++..+. .|.||||.|+..|+.+++++|++ +|+
T Consensus 96 ~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga 175 (273)
T 2pnn_A 96 DSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPA 175 (273)
T ss_dssp STTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCC
T ss_pred cccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCC
Confidence 3455778999999999999999999999999999997 79999999999999999999999 999
Q ss_pred CCCccCCCCCCC
Q 007326 597 DINLKGNSIMQM 608 (608)
Q Consensus 597 d~~~~~~~g~t~ 608 (608)
|+|.+|..|+|+
T Consensus 176 d~~~~d~~g~tp 187 (273)
T 2pnn_A 176 DISARDSVGNTV 187 (273)
T ss_dssp CTTCCCTTSCCH
T ss_pred CceeeCCCCCcH
Confidence 999999999984
No 153
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=98.66 E-value=3.4e-08 Score=99.33 Aligned_cols=80 Identities=23% Similarity=0.247 Sum_probs=66.1
Q ss_pred cccccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 529 TFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 529 ~~~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
...++..+....++++.|+..|+.++++.|++.|++++..|..|.||||.|+..|+.+++++|+++|++++..|..|+|+
T Consensus 48 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~ 127 (351)
T 3utm_A 48 NVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTP 127 (351)
T ss_dssp TTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCH
Confidence 34455556667788888888888888888888888888888888888888888888888888888888888888888773
No 154
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=98.66 E-value=2.1e-08 Score=95.51 Aligned_cols=71 Identities=23% Similarity=0.329 Sum_probs=66.8
Q ss_pred hhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccC-CCCCCC
Q 007326 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKG-NSIMQM 608 (608)
Q Consensus 537 ~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~-~~g~t~ 608 (608)
....++++.|+..|+.+.++.|++ |+++|..|..|+||||.|+..|+.+++++|+++|+|+|.+| ..|+|+
T Consensus 43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~ 114 (244)
T 3ui2_A 43 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTA 114 (244)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCH
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCH
Confidence 456789999999999999999999 99999999999999999999999999999999999999999 778873
No 155
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=98.66 E-value=1.8e-08 Score=94.45 Aligned_cols=71 Identities=20% Similarity=0.264 Sum_probs=67.2
Q ss_pred hhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHc-CCCCCccCCCCCCC
Q 007326 538 ELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQK-GVDINLKGNSIMQM 608 (608)
Q Consensus 538 ~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~-gad~~~~~~~g~t~ 608 (608)
...++++.|+..|+.+.++.|++.|++++..|..|+||||+|+..|+.+++++|+++ |+++|.+|..|+|+
T Consensus 72 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tp 143 (222)
T 3ehr_A 72 SIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTA 143 (222)
T ss_dssp EESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCH
T ss_pred ccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCH
Confidence 346789999999999999999999999999999999999999999999999999999 99999999999983
No 156
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=98.66 E-value=2.6e-08 Score=95.93 Aligned_cols=78 Identities=21% Similarity=0.301 Sum_probs=67.7
Q ss_pred cccccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCC
Q 007326 529 TFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQ 607 (608)
Q Consensus 529 ~~~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t 607 (608)
...++..+....++++.|+..|+.++++.|++.|++++..|..|.||||.|+..|+.+++++|+++|++++. +..|.|
T Consensus 26 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~g~t 103 (261)
T 2xai_A 26 GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP-ESDLAS 103 (261)
T ss_dssp TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSC-SCTTCC
T ss_pred CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCC
Confidence 345566667788899999999999999999999999999999999999999999999999999999999986 445665
No 157
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=98.65 E-value=2.5e-08 Score=103.92 Aligned_cols=78 Identities=24% Similarity=0.258 Sum_probs=71.8
Q ss_pred cccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 531 ~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
.++..+....++++.|+..++.++++.|+++|+++|.+|..|.||||.|+..|+.+++++|+++|||++.+|..|.|+
T Consensus 303 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~ 380 (437)
T 1n11_A 303 MVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTP 380 (437)
T ss_dssp CTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCH
T ss_pred cCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCH
Confidence 344455667789999999999999999999999999999999999999999999999999999999999999999884
No 158
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=98.65 E-value=3.6e-08 Score=100.00 Aligned_cols=76 Identities=16% Similarity=0.218 Sum_probs=61.0
Q ss_pred ccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCC-----CCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCC
Q 007326 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGAD-----PNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIM 606 (608)
Q Consensus 532 ~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad-----~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~ 606 (608)
++..+....++++.|+..++.++++.|++.|++ ++..|..|+||||+|+..|+.+++++|+++|||+|.+|..|+
T Consensus 166 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~ 245 (364)
T 3ljn_A 166 PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHT 245 (364)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSC
T ss_pred CcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC
Confidence 334445566788888888888888888888887 888888888888888888888888888888888888888887
Q ss_pred C
Q 007326 607 Q 607 (608)
Q Consensus 607 t 607 (608)
|
T Consensus 246 t 246 (364)
T 3ljn_A 246 V 246 (364)
T ss_dssp C
T ss_pred C
Confidence 7
No 159
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=98.63 E-value=5e-08 Score=95.27 Aligned_cols=76 Identities=24% Similarity=0.278 Sum_probs=69.7
Q ss_pred ccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 532 ~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
++..+....++++.|+..+..++++.|++.|++++. +..|.||||.|+..++.+++++|+++|+|++.+|..|.|+
T Consensus 183 ~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~ 258 (285)
T 3d9h_A 183 IDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRP 258 (285)
T ss_dssp TTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCG
T ss_pred CCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCH
Confidence 444556677899999999999999999999999995 8899999999999999999999999999999999999984
No 160
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=98.62 E-value=6.3e-08 Score=90.57 Aligned_cols=77 Identities=25% Similarity=0.220 Sum_probs=70.7
Q ss_pred ccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 532 ~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
++..+....++++.|+..+..+.++.|++.|++++..|..|.||||.|+..|+.+++++|+++|+|++.+|..|.|+
T Consensus 85 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 161 (223)
T 2f8y_A 85 LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP 161 (223)
T ss_dssp TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred cccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCH
Confidence 33445566789999999999999999999999999999999999999999999999999999999999999999884
No 161
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=98.61 E-value=3.6e-08 Score=96.26 Aligned_cols=69 Identities=23% Similarity=0.317 Sum_probs=38.7
Q ss_pred ccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCc
Q 007326 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINL 600 (608)
Q Consensus 532 ~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~ 600 (608)
++..+....++++.|+..|+.++++.|++.|++++..|..|.||||.|+..|+.+++++|+++|++++.
T Consensus 85 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~ 153 (285)
T 3d9h_A 85 VNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP 153 (285)
T ss_dssp SCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSC
T ss_pred CCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCC
Confidence 333444445555555555555555555555555555555555555555555555555555555555554
No 162
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=98.61 E-value=3.5e-08 Score=94.49 Aligned_cols=77 Identities=25% Similarity=0.220 Sum_probs=70.8
Q ss_pred ccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 532 ~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
++..+....++++.|+..+..+.++.|++.|++++..|..|.||||.|+..|+.+++++|+++|+|+|.+|..|.|+
T Consensus 117 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tp 193 (253)
T 1yyh_A 117 LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP 193 (253)
T ss_dssp TTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred ccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence 34445567789999999999999999999999999999999999999999999999999999999999999999884
No 163
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=98.60 E-value=6.4e-08 Score=91.09 Aligned_cols=78 Identities=24% Similarity=0.311 Sum_probs=62.4
Q ss_pred ccccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCC
Q 007326 530 FHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQ 607 (608)
Q Consensus 530 ~~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t 607 (608)
..++..+....++++.|+..++.+.++.|+++|++++..|..|.||||.|+..++.+++++|+++|++++.+|..|.|
T Consensus 64 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t 141 (231)
T 3aji_A 64 VPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDAT 141 (231)
T ss_dssp CCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred CCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCc
Confidence 344555566677888888888888888888888888888888888888888888888888888888888888887776
No 164
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=98.59 E-value=1.1e-07 Score=87.18 Aligned_cols=73 Identities=21% Similarity=0.222 Sum_probs=40.7
Q ss_pred hhhhhhhhhhhhhhcCCHHHHHHHH-HcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcC-CCCCccCCCCCC
Q 007326 535 HEAELALKVNSAAYHGDLYQLEGLI-RAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKG-VDINLKGNSIMQ 607 (608)
Q Consensus 535 ~~~~~~~~l~~aa~~g~~~~~~~Ll-~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~g-ad~~~~~~~g~t 607 (608)
.+....++++.|+..++.++++.|+ ..+++++..|..|.||||.|+..|+.+++++|+++| ++++.+|..|.|
T Consensus 68 ~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t 142 (201)
T 3hra_A 68 QNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYT 142 (201)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCC
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCC
Confidence 3344445555555555555555555 334555555555555555555555555555555555 555555555554
No 165
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=98.56 E-value=3.6e-08 Score=94.56 Aligned_cols=70 Identities=20% Similarity=0.163 Sum_probs=66.6
Q ss_pred hhhhhhhhhhcCCHHHHHHHHH---cCCCCCCCCCCCChHhhHHHh--cCcHH-------HHHHHHHcCCCC-------C
Q 007326 539 LALKVNSAAYHGDLYQLEGLIR---AGADPNRTDYDGRSPLHLAAS--RGYEE-------IMTFLIQKGVDI-------N 599 (608)
Q Consensus 539 ~~~~l~~aa~~g~~~~~~~Ll~---~gad~~~~d~~g~t~L~~a~~--~~~~~-------~v~~Ll~~gad~-------~ 599 (608)
..++++.|+..++.++++.|++ .|++++..|..|+||||+|+. .++.+ ++++|+++|||+ |
T Consensus 136 g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~ 215 (256)
T 2etb_A 136 GELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEE 215 (256)
T ss_dssp CSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGG
T ss_pred CCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCccccccccc
Confidence 7789999999999999999999 999999999999999999998 88888 999999999999 9
Q ss_pred ccCCCCCCC
Q 007326 600 LKGNSIMQM 608 (608)
Q Consensus 600 ~~~~~g~t~ 608 (608)
.+|..|+|+
T Consensus 216 ~~d~~g~tp 224 (256)
T 2etb_A 216 ISNHQGLTP 224 (256)
T ss_dssp CCCTTSCCH
T ss_pred ccCCCCCCH
Confidence 999999984
No 166
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=98.56 E-value=7.2e-08 Score=94.09 Aligned_cols=69 Identities=19% Similarity=0.236 Sum_probs=64.0
Q ss_pred hhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCC-CC
Q 007326 539 LALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSI-MQ 607 (608)
Q Consensus 539 ~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g-~t 607 (608)
..++++.|+..|+.++++.|+++|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..| .|
T Consensus 62 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t 131 (285)
T 3kea_A 62 NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKT 131 (285)
T ss_dssp TCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGS
T ss_pred CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCC
Confidence 5789999999999999999999999999999999999999999999999999999999999999888 45
No 167
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=98.55 E-value=9.8e-08 Score=90.19 Aligned_cols=78 Identities=28% Similarity=0.404 Sum_probs=63.3
Q ss_pred ccccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcC-CCCCccCCCCCC
Q 007326 530 FHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKG-VDINLKGNSIMQ 607 (608)
Q Consensus 530 ~~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~g-ad~~~~~~~g~t 607 (608)
..++..+....++++.|+..++.+.++.|++.|++++..+..|.||||.|+..|+.+++++|+++| ++++..|..|.|
T Consensus 35 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t 113 (237)
T 3b7b_A 35 ANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWT 113 (237)
T ss_dssp CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCC
T ss_pred CCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCC
Confidence 344445556677888888888888888888888888888888888888888888888888888887 888888888876
No 168
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=98.55 E-value=1.5e-07 Score=94.24 Aligned_cols=68 Identities=21% Similarity=0.232 Sum_probs=39.4
Q ss_pred hhhhhhhhhhhhhhcCCHHHHHHHHHc-CCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccC
Q 007326 535 HEAELALKVNSAAYHGDLYQLEGLIRA-GADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKG 602 (608)
Q Consensus 535 ~~~~~~~~l~~aa~~g~~~~~~~Ll~~-gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~ 602 (608)
.+....++++.++..+..+.++.|+.. |++++.+|..|+||||+|+..|+.++|++|+++|||+|.+|
T Consensus 235 ~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~~ 303 (337)
T 4g8k_A 235 RGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 303 (337)
T ss_dssp CCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTCC
T ss_pred cCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCC
Confidence 344445556666666666666555543 55666666666666666666666666666666666655543
No 169
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=98.54 E-value=5.4e-08 Score=97.05 Aligned_cols=75 Identities=17% Similarity=0.106 Sum_probs=62.6
Q ss_pred chhhhhhhhhhhhhh----cCCHHHHHHHHHcCC---------------------------------------------C
Q 007326 534 KHEAELALKVNSAAY----HGDLYQLEGLIRAGA---------------------------------------------D 564 (608)
Q Consensus 534 ~~~~~~~~~l~~aa~----~g~~~~~~~Ll~~ga---------------------------------------------d 564 (608)
..+....+++|.|+. .+..++++.|++.++ +
T Consensus 196 ~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~ 275 (327)
T 1sw6_A 196 LEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANM 275 (327)
T ss_dssp EECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhC
Confidence 344556677777776 677777777776532 6
Q ss_pred CCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 565 PNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 565 ~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
++.+|..|+||||+|+..|+.+++++|+++|||+|.+|..|+|+
T Consensus 276 ~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~Tp 319 (327)
T 1sw6_A 276 LNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRP 319 (327)
T ss_dssp TTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCG
T ss_pred CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCH
Confidence 88899999999999999999999999999999999999999985
No 170
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=98.54 E-value=9.9e-08 Score=90.35 Aligned_cols=77 Identities=22% Similarity=0.246 Sum_probs=70.5
Q ss_pred ccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCC-CCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTD-YDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 532 ~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d-~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
++..+....++++.|+..+..+.++.|++.|++++..+ ..|.||||.|+..|+.+++++|+++|+|+|.+|..|.|+
T Consensus 109 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 186 (241)
T 1k1a_A 109 LEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSA 186 (241)
T ss_dssp TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBH
T ss_pred ccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence 34445567789999999999999999999999999999 889999999999999999999999999999999999873
No 171
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=98.53 E-value=8.5e-08 Score=90.31 Aligned_cols=72 Identities=19% Similarity=0.092 Sum_probs=67.2
Q ss_pred hhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHH----HHHHHcCCCC------CccCCCCC
Q 007326 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIM----TFLIQKGVDI------NLKGNSIM 606 (608)
Q Consensus 537 ~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v----~~Ll~~gad~------~~~~~~g~ 606 (608)
....++++.|+..+..+.++.|+++|++++..|..|.||||+|+..++.+++ ++|+++|+++ +.+|..|+
T Consensus 119 ~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~ 198 (232)
T 2rfa_A 119 YYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGL 198 (232)
T ss_dssp CCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSC
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCC
Confidence 3577899999999999999999999999999999999999999999999988 9999999998 58899998
Q ss_pred CC
Q 007326 607 QM 608 (608)
Q Consensus 607 t~ 608 (608)
|+
T Consensus 199 tp 200 (232)
T 2rfa_A 199 TP 200 (232)
T ss_dssp CH
T ss_pred CH
Confidence 84
No 172
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=98.53 E-value=9.8e-08 Score=97.10 Aligned_cols=73 Identities=22% Similarity=0.342 Sum_probs=67.9
Q ss_pred hhhhhhhhhhhhhcCCHHHHHHHHHcC-CCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 536 EAELALKVNSAAYHGDLYQLEGLIRAG-ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 536 ~~~~~~~l~~aa~~g~~~~~~~Ll~~g-ad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
+....++++.|+..++.++++.|++.| ++++..|..|.||||+|+..|+.+++++|+++|||+|.+|..|.|.
T Consensus 276 d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~ 349 (373)
T 2fo1_E 276 KYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTA 349 (373)
T ss_dssp SCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCH
T ss_pred cccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCH
Confidence 445678999999999999999999876 9999999999999999999999999999999999999999999883
No 173
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=98.52 E-value=5.1e-08 Score=95.15 Aligned_cols=75 Identities=21% Similarity=0.147 Sum_probs=69.4
Q ss_pred ccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 532 ~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
++..+....++++.|+..|+.+.++.|++.|++++..| |+||||.|+..|+.+++++|+++|+|+|.+|..|+|+
T Consensus 24 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~ 98 (285)
T 3kea_A 24 TFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTA 98 (285)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcH
Confidence 45566778899999999999999999999999999885 9999999999999999999999999999999999884
No 174
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=98.52 E-value=5.7e-09 Score=104.52 Aligned_cols=54 Identities=24% Similarity=0.391 Sum_probs=49.5
Q ss_pred HHHHHHHhhhhcccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 007326 267 ITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK 320 (608)
Q Consensus 267 ~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~ 320 (608)
.+|+||+++|+||+||||+.|.|..+++++++++++|+.+++++++.+.+.+.+
T Consensus 47 ~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~ 100 (336)
T 1lnq_A 47 TVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLIN 100 (336)
T ss_dssp STTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC--
T ss_pred HHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 389999999999999999999999999999999999999999999998877654
No 175
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=98.51 E-value=5.5e-08 Score=93.47 Aligned_cols=72 Identities=21% Similarity=0.156 Sum_probs=66.8
Q ss_pred hhhhhhhhhhhhcCCHHHHHHHHH---cCCCCCCCCCCCChHhhHHHhcCc---------HHHHHHHHHcCCCC------
Q 007326 537 AELALKVNSAAYHGDLYQLEGLIR---AGADPNRTDYDGRSPLHLAASRGY---------EEIMTFLIQKGVDI------ 598 (608)
Q Consensus 537 ~~~~~~l~~aa~~g~~~~~~~Ll~---~gad~~~~d~~g~t~L~~a~~~~~---------~~~v~~Ll~~gad~------ 598 (608)
....++++.|+..++.++++.|++ .|++++.+|..|+||||+|+..++ .+++++|+++||++
T Consensus 138 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~ 217 (260)
T 3jxi_A 138 YFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNL 217 (260)
T ss_dssp CSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCG
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccch
Confidence 457789999999999999999999 999999999999999999998887 79999999999999
Q ss_pred -CccCCCCCCC
Q 007326 599 -NLKGNSIMQM 608 (608)
Q Consensus 599 -~~~~~~g~t~ 608 (608)
+.+|..|+|+
T Consensus 218 ~~~~d~~g~tp 228 (260)
T 3jxi_A 218 EALLNNDGLSP 228 (260)
T ss_dssp GGCCCTTSCCH
T ss_pred hhcccCCCCCH
Confidence 6799999984
No 176
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=98.50 E-value=1e-07 Score=99.18 Aligned_cols=79 Identities=20% Similarity=0.225 Sum_probs=69.7
Q ss_pred ccccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 530 FHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 530 ~~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
...+..+....++++.|+..|+.++++.|++.|++++..+..|.||||.|+..|+.+++++|+++|++++..|..|.|+
T Consensus 38 ~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~ 116 (437)
T 1n11_A 38 ASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTP 116 (437)
T ss_dssp CCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCH
T ss_pred CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcH
Confidence 3444555667789999999999999999999999999999999999999999999999999999999999999998873
No 177
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.49 E-value=1.4e-07 Score=99.90 Aligned_cols=75 Identities=17% Similarity=0.077 Sum_probs=62.6
Q ss_pred ccccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCC
Q 007326 530 FHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNS 604 (608)
Q Consensus 530 ~~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~ 604 (608)
.+++..+..+.+|+|.|+..|+.++++.|+++|++++..|..|.||||+|+..|+.+++++|+++|||++..+..
T Consensus 198 a~vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~h 272 (497)
T 3lvq_E 198 GHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAFPLH 272 (497)
T ss_dssp CCTTCCCSSSCCHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC--------
T ss_pred CCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCCCcce
Confidence 345556677889999999999999999999999999999999999999999999999999999999999986543
No 178
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=98.49 E-value=1.9e-07 Score=90.62 Aligned_cols=73 Identities=19% Similarity=0.216 Sum_probs=66.3
Q ss_pred cccchhhhhhhhhhhhhhcCCHHHHHHHHH-cCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCC
Q 007326 531 HISKHEAELALKVNSAAYHGDLYQLEGLIR-AGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603 (608)
Q Consensus 531 ~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~-~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~ 603 (608)
.++..+....++++.|+..++.+.++.|++ .|++++..|..|.||||.|+..++.+++++|+++|||++.+|.
T Consensus 211 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~~d~ 284 (285)
T 1wdy_A 211 DVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL 284 (285)
T ss_dssp CSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred CCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccc
Confidence 344455667889999999999999999999 8999999999999999999999999999999999999999874
No 179
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=98.47 E-value=1.4e-07 Score=91.52 Aligned_cols=77 Identities=19% Similarity=0.256 Sum_probs=67.1
Q ss_pred ccchhhhhhhhhhhhh-----hcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCC
Q 007326 532 ISKHEAELALKVNSAA-----YHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIM 606 (608)
Q Consensus 532 ~~~~~~~~~~~l~~aa-----~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~ 606 (608)
++..+....++++.++ ..+..+.++.|++.|++.+..+..|+||||.|+..|+.+++++|+++|+|+|.+|..|+
T Consensus 138 ~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~ 217 (276)
T 4hbd_A 138 VDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGS 217 (276)
T ss_dssp TTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred CCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCC
Confidence 3444555667788777 66788889999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 007326 607 QM 608 (608)
Q Consensus 607 t~ 608 (608)
|+
T Consensus 218 Tp 219 (276)
T 4hbd_A 218 TA 219 (276)
T ss_dssp CH
T ss_pred CH
Confidence 84
No 180
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=98.47 E-value=8.3e-08 Score=92.97 Aligned_cols=71 Identities=17% Similarity=0.149 Sum_probs=66.3
Q ss_pred hhhhhhhhhhhcCCHHHHHHHHH---cCCCCCCCCCCCChHhhHHHhcCc---------HHHHHHHHHcCCCCC------
Q 007326 538 ELALKVNSAAYHGDLYQLEGLIR---AGADPNRTDYDGRSPLHLAASRGY---------EEIMTFLIQKGVDIN------ 599 (608)
Q Consensus 538 ~~~~~l~~aa~~g~~~~~~~Ll~---~gad~~~~d~~g~t~L~~a~~~~~---------~~~v~~Ll~~gad~~------ 599 (608)
...++++.|+..++.++++.|++ .|++++.+|..|+||||+|+..|+ .+++++|+++|+|+|
T Consensus 147 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~ 226 (273)
T 2pnn_A 147 FGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLE 226 (273)
T ss_dssp SCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGG
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccc
Confidence 57789999999999999999999 999999999999999999999988 899999999999997
Q ss_pred -ccCCCCCCC
Q 007326 600 -LKGNSIMQM 608 (608)
Q Consensus 600 -~~~~~g~t~ 608 (608)
.+|..|+|+
T Consensus 227 ~~~d~~g~Tp 236 (273)
T 2pnn_A 227 EITNRKGLTP 236 (273)
T ss_dssp GCCCTTSCCH
T ss_pred cccCCCCCCH
Confidence 489999884
No 181
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=98.45 E-value=3e-07 Score=89.22 Aligned_cols=78 Identities=19% Similarity=0.175 Sum_probs=70.6
Q ss_pred cccchhhhhhhhhhhhhhcCC----HHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHH-cCCCCCccCCCC
Q 007326 531 HISKHEAELALKVNSAAYHGD----LYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQ-KGVDINLKGNSI 605 (608)
Q Consensus 531 ~~~~~~~~~~~~l~~aa~~g~----~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~-~gad~~~~~~~g 605 (608)
.++..+....++++.++..+. .++++.|++.|++++..|..|.||||.|+..|+.+++++|++ +|+++|.+|..|
T Consensus 174 ~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g 253 (285)
T 1wdy_A 174 DVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDG 253 (285)
T ss_dssp CTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTS
T ss_pred CCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCC
Confidence 344455667789999999998 899999999999999999999999999999999999999999 899999999999
Q ss_pred CCC
Q 007326 606 MQM 608 (608)
Q Consensus 606 ~t~ 608 (608)
.|+
T Consensus 254 ~t~ 256 (285)
T 1wdy_A 254 KTA 256 (285)
T ss_dssp CCH
T ss_pred CcH
Confidence 984
No 182
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=98.43 E-value=2.4e-07 Score=89.82 Aligned_cols=71 Identities=17% Similarity=0.137 Sum_probs=64.5
Q ss_pred cccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCcc
Q 007326 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601 (608)
Q Consensus 531 ~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~ 601 (608)
.++..+..+.+|+|.|+..|+.++++.|+++|++++.+|..|.||||+|+..|+.+++++|+++|++....
T Consensus 197 ~in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~ 267 (278)
T 1dcq_A 197 NLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNS 267 (278)
T ss_dssp CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCCCS
T ss_pred CccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc
Confidence 45555667889999999999999999999999999999999999999999999999999999999976543
No 183
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=98.42 E-value=1.8e-07 Score=88.36 Aligned_cols=77 Identities=23% Similarity=0.217 Sum_probs=68.2
Q ss_pred cccchhh-hhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCC--ccCCCCCC
Q 007326 531 HISKHEA-ELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN--LKGNSIMQ 607 (608)
Q Consensus 531 ~~~~~~~-~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~--~~~~~g~t 607 (608)
.++..+. ...++++.|+..++.++++.|+++|++++..|..|.||||+|+..++.+++++|+++||+.. .++..|.|
T Consensus 142 ~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~ 221 (236)
T 1ikn_D 142 DVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEE 221 (236)
T ss_dssp CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTT
T ss_pred CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHH
Confidence 3444444 67889999999999999999999999999999999999999999999999999999999877 66677765
No 184
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=98.42 E-value=9.8e-08 Score=95.17 Aligned_cols=80 Identities=13% Similarity=0.050 Sum_probs=70.8
Q ss_pred cccccc-hhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCc---HHHHHHHHHcC-CCCCccCC
Q 007326 529 TFHISK-HEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGY---EEIMTFLIQKG-VDINLKGN 603 (608)
Q Consensus 529 ~~~~~~-~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~---~~~v~~Ll~~g-ad~~~~~~ 603 (608)
...++. .+....+++|.|+..|+.++++.|+++|++++..|..|+||||+|+..|+ .++++.|++.+ ++++.+|.
T Consensus 120 g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~ 199 (327)
T 1sw6_A 120 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDS 199 (327)
T ss_dssp CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECT
T ss_pred CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCC
Confidence 345555 67778899999999999999999999999999999999999999999998 67888888886 88999999
Q ss_pred CCCCC
Q 007326 604 SIMQM 608 (608)
Q Consensus 604 ~g~t~ 608 (608)
.|+|+
T Consensus 200 ~g~tp 204 (327)
T 1sw6_A 200 MNRTI 204 (327)
T ss_dssp TCCCH
T ss_pred CCCCH
Confidence 99984
No 185
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=98.41 E-value=4.3e-07 Score=91.43 Aligned_cols=70 Identities=23% Similarity=0.232 Sum_probs=65.7
Q ss_pred hhhhhhhhhhc-CCHHHHHHHHHcCCCCCCCC--CCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 539 LALKVNSAAYH-GDLYQLEGLIRAGADPNRTD--YDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 539 ~~~~l~~aa~~-g~~~~~~~Ll~~gad~~~~d--~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
..++++.|+.. ++.+.++.|++.|++++..+ ..|.||||+|+..|+.+++++|+++|+|+|.+|..|+|+
T Consensus 199 ~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~Tp 271 (368)
T 3jue_A 199 PGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGP 271 (368)
T ss_dssp HHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred CCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence 45678889999 99999999999999999998 899999999999999999999999999999999999983
No 186
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=98.41 E-value=2.5e-07 Score=93.67 Aligned_cols=74 Identities=15% Similarity=0.162 Sum_probs=69.6
Q ss_pred hhhhhhhhhhhhhhcC--CHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCC-----CCccCCCCCC
Q 007326 535 HEAELALKVNSAAYHG--DLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVD-----INLKGNSIMQ 607 (608)
Q Consensus 535 ~~~~~~~~l~~aa~~g--~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad-----~~~~~~~g~t 607 (608)
.+....++++.|+..| +.++++.|++.|++++..|..|.||||.|+..|+.+++++|+++|++ +|..|..|+|
T Consensus 134 ~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t 213 (364)
T 3ljn_A 134 KHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNS 213 (364)
T ss_dssp EEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCC
T ss_pred CCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCc
Confidence 4556778999999999 99999999999999999999999999999999999999999999999 9999999998
Q ss_pred C
Q 007326 608 M 608 (608)
Q Consensus 608 ~ 608 (608)
+
T Consensus 214 ~ 214 (364)
T 3ljn_A 214 H 214 (364)
T ss_dssp T
T ss_pred H
Confidence 5
No 187
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=98.31 E-value=1.6e-06 Score=81.74 Aligned_cols=69 Identities=33% Similarity=0.474 Sum_probs=59.3
Q ss_pred hhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCC
Q 007326 539 LALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQ 607 (608)
Q Consensus 539 ~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t 607 (608)
..++++.|+..++.+.++.|++.|++++..+..|.||||.|+..|+.+++++|+++|++++.+|..|.|
T Consensus 76 ~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t 144 (240)
T 3eu9_A 76 NSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMT 144 (240)
T ss_dssp TBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred CCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCc
Confidence 567788888888888888888888888888888888888888888888888888888888888888876
No 188
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=98.28 E-value=5.3e-07 Score=88.54 Aligned_cols=68 Identities=19% Similarity=0.170 Sum_probs=62.4
Q ss_pred cccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCC
Q 007326 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDI 598 (608)
Q Consensus 531 ~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~ 598 (608)
.++..+....+++|.|+..+..++++.|++.|++++.+|..|.||||+|+..++.+++++|+++|++.
T Consensus 218 dvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~~ 285 (301)
T 2b0o_E 218 HLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGT 285 (301)
T ss_dssp CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCC
Confidence 34445667789999999999999999999999999999999999999999999999999999999874
No 189
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=98.28 E-value=5.8e-07 Score=91.35 Aligned_cols=79 Identities=22% Similarity=0.224 Sum_probs=71.3
Q ss_pred ccccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHHHHcC---CCCCccCCCCC
Q 007326 530 FHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKG---VDINLKGNSIM 606 (608)
Q Consensus 530 ~~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~g---ad~~~~~~~g~ 606 (608)
..++..+....++++.|+..|+.++++.|++.|++++..|..|.||||.|+..|+.+++++|+++| ++++..|..|.
T Consensus 157 a~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~ 236 (373)
T 2fo1_E 157 ADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGM 236 (373)
T ss_dssp CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSC
T ss_pred CCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCC
Confidence 344555667789999999999999999999999999999999999999999999999999999998 89999999998
Q ss_pred CC
Q 007326 607 QM 608 (608)
Q Consensus 607 t~ 608 (608)
|+
T Consensus 237 t~ 238 (373)
T 2fo1_E 237 TA 238 (373)
T ss_dssp CH
T ss_pred CH
Confidence 73
No 190
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=98.24 E-value=1.6e-06 Score=81.75 Aligned_cols=78 Identities=19% Similarity=0.196 Sum_probs=68.7
Q ss_pred cccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCC-CCChHhhHHHhcCcHHHHHHHHHcCCCCCccCCCCCCC
Q 007326 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDY-DGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQM 608 (608)
Q Consensus 531 ~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~-~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~~~~~g~t~ 608 (608)
.++..+....++++.|+..++.+.++.|++.|++++..+. .|.||||.|+..|+.+++++|+++|++++.+|..|.|+
T Consensus 34 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 112 (240)
T 3eu9_A 34 DVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSC 112 (240)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred CcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCH
Confidence 3444455677899999999999999999999999987664 49999999999999999999999999999999999873
No 191
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=98.22 E-value=1.7e-06 Score=70.69 Aligned_cols=61 Identities=23% Similarity=0.372 Sum_probs=55.8
Q ss_pred cccchhhhhhhhhhhhhhcCCHHHHHHHHHcCCCCCCCCCCCChHhhHHHhcCcHHHHHHH
Q 007326 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFL 591 (608)
Q Consensus 531 ~~~~~~~~~~~~l~~aa~~g~~~~~~~Ll~~gad~~~~d~~g~t~L~~a~~~~~~~~v~~L 591 (608)
.++..+....++++.|+..++.++++.|+++|++++..|..|.||||+|+..|+.+++++|
T Consensus 49 ~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 49 DVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred CCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHHcCCHHHHHHh
Confidence 4455566778999999999999999999999999999999999999999999999999976
No 192
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=97.83 E-value=2.7e-06 Score=85.99 Aligned_cols=69 Identities=17% Similarity=0.054 Sum_probs=52.9
Q ss_pred hhhhhhhhhhhcCCHHHHHHHHHcCCCC---CCCCCCCChHhhHHHhcCcHHHHHHHHHcCCCCCc--cCCCCCC
Q 007326 538 ELALKVNSAAYHGDLYQLEGLIRAGADP---NRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINL--KGNSIMQ 607 (608)
Q Consensus 538 ~~~~~l~~aa~~g~~~~~~~Ll~~gad~---~~~d~~g~t~L~~a~~~~~~~~v~~Ll~~gad~~~--~~~~g~t 607 (608)
...+|++.|+..|+.++++.|+++|+++ +..+.+ .||||.|+..|+.+++++|+++|++++. .|..|.|
T Consensus 127 ~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~T 200 (376)
T 2aja_A 127 ENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYY 200 (376)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCC
Confidence 3455888899999999999999998752 222222 8899999999999999999999988776 6655544
No 193
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=97.34 E-value=1.9e-05 Score=79.73 Aligned_cols=57 Identities=23% Similarity=0.267 Sum_probs=44.0
Q ss_pred hhhhhhhhhcCCHHHHHHHHHcCCCCCC--CCCCCChHhhHHH-hcCcHHHHHHHHHcCC
Q 007326 540 ALKVNSAAYHGDLYQLEGLIRAGADPNR--TDYDGRSPLHLAA-SRGYEEIMTFLIQKGV 596 (608)
Q Consensus 540 ~~~l~~aa~~g~~~~~~~Ll~~gad~~~--~d~~g~t~L~~a~-~~~~~~~v~~Ll~~ga 596 (608)
.++++.|+..|+.++++.|+++|++++. .|..|.||||.|+ ..|+.+++++|+++|+
T Consensus 164 ~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga 223 (376)
T 2aja_A 164 YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV 223 (376)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH
T ss_pred CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC
Confidence 6677888888888888888888877766 6777778888888 7888777777777664
No 194
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=88.44 E-value=0.75 Score=51.35 Aligned_cols=56 Identities=16% Similarity=0.249 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhhhhcccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 007326 264 KSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK 320 (608)
Q Consensus 264 ~~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~ 320 (608)
.....++||++.++++.| ++..|.+...+++.++++++++++.+...+++++.++.
T Consensus 562 ~~~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 617 (823)
T 3kg2_A 562 FGIFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV 617 (823)
T ss_dssp HHHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 346689999999999999 88999999999999999999999999999999998864
No 195
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=80.05 E-value=7.5 Score=30.60 Aligned_cols=64 Identities=19% Similarity=0.193 Sum_probs=40.3
Q ss_pred cccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecchhhhcCCCcccEEEEeeceeeEEe
Q 007326 414 FFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRI 488 (608)
Q Consensus 414 ~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l 488 (608)
.+.+|..+-....+...+++|++|.+.+.. +|+ ...+.+||.+= + +...+..+++.+++.++.+
T Consensus 44 ~~~~g~~~~~H~h~~~e~~~vl~G~~~~~i---~~~---~~~l~~Gd~i~----i-~~~~~H~~~~~~~~~~~~i 107 (114)
T 2ozj_A 44 SFADGESVSEEEYFGDTLYLILQGEAVITF---DDQ---KIDLVPEDVLM----V-PAHKIHAIAGKGRFKMLQI 107 (114)
T ss_dssp EEETTSSCCCBCCSSCEEEEEEEEEEEEEE---TTE---EEEECTTCEEE----E-CTTCCBEEEEEEEEEEEEE
T ss_pred EECCCCccccEECCCCeEEEEEeCEEEEEE---CCE---EEEecCCCEEE----E-CCCCcEEEEeCCCcEEEEE
Confidence 355666554344456789999999999876 443 36789999752 2 2223345555667766554
No 196
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=77.75 E-value=8.3 Score=30.50 Aligned_cols=66 Identities=14% Similarity=0.024 Sum_probs=44.4
Q ss_pred ccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecchhhhcCCCcccEEEEeeceeeEE
Q 007326 411 HEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLR 487 (608)
Q Consensus 411 ~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~ 487 (608)
....++||..+-..-.+.+.+++|++|.+++.. +|+ ...+.+||.+=- .......+++.+++.++.
T Consensus 39 ~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i---~~~---~~~l~~Gd~i~i-----p~~~~H~~~~~~~~~~~~ 104 (114)
T 3fjs_A 39 MRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGV---DGA---QRRLHQGDLLYL-----GAGAAHDVNAITNTSLLV 104 (114)
T ss_dssp EEEEECTTCEEEEECCSSCEEEEEEESCEEEEE---TTE---EEEECTTEEEEE-----CTTCCEEEEESSSEEEEE
T ss_pred EEEEECCCCccCceeCCCcEEEEEEECEEEEEE---CCE---EEEECCCCEEEE-----CCCCcEEEEeCCCcEEEE
Confidence 345677888776555556789999999999876 443 367899987632 222345667777766443
No 197
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=75.82 E-value=7.4 Score=35.38 Aligned_cols=70 Identities=11% Similarity=0.166 Sum_probs=52.5
Q ss_pred cccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecchhhhcCCCcccEEEEeeceeeEEec
Q 007326 410 LHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRID 489 (608)
Q Consensus 410 ~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~ 489 (608)
+....+.||+.+-..-.+.+.+++|++|.+++.. +|++ ..+++||++= .....+..++|.+++.++.+.
T Consensus 39 ~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i---~~~~---~~l~~Gd~~~-----~p~~~~H~~~a~~~~~~l~i~ 107 (227)
T 3rns_A 39 ISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFI---ENNK---KTISNGDFLE-----ITANHNYSIEARDNLKLIEIG 107 (227)
T ss_dssp EEEEEECTTCEEEECSCSSCEEEEEEESEEEEEE---SSCE---EEEETTEEEE-----ECSSCCEEEEESSSEEEEEEE
T ss_pred EEEEEECCCCccCccccCCCEEEEEEeCEEEEEE---CCEE---EEECCCCEEE-----ECCCCCEEEEECCCcEEEEEE
Confidence 3455688999987777788899999999999986 4543 6789998752 223345678889999988774
Q ss_pred h
Q 007326 490 K 490 (608)
Q Consensus 490 ~ 490 (608)
.
T Consensus 108 ~ 108 (227)
T 3rns_A 108 E 108 (227)
T ss_dssp E
T ss_pred e
Confidence 3
No 198
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=68.43 E-value=19 Score=28.09 Aligned_cols=67 Identities=12% Similarity=0.042 Sum_probs=41.8
Q ss_pred ccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecchhhhcCCCcccEEEEeeceeeEEe
Q 007326 411 HEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRI 488 (608)
Q Consensus 411 ~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l 488 (608)
....+.||..+-..-.....+++|++|.+.+.. +|+. ..+.+||.+= + .........+.++++++.+
T Consensus 43 ~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~---~~~~---~~l~~Gd~~~----i-p~~~~H~~~~~~~~~~~~v 109 (115)
T 1yhf_A 43 TVFSLDKGQEIGRHSSPGDAMVTILSGLAEITI---DQET---YRVAEGQTIV----M-PAGIPHALYAVEAFQMLLV 109 (115)
T ss_dssp EEEEECTTCEEEEECCSSEEEEEEEESEEEEEE---TTEE---EEEETTCEEE----E-CTTSCEEEEESSCEEEEEE
T ss_pred EEEEECCCCccCCEECCCcEEEEEEeCEEEEEE---CCEE---EEECCCCEEE----E-CCCCCEEEEECCCceEEEE
Confidence 344567777654333345689999999999875 4433 5789999763 1 2223345566666665544
No 199
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=64.89 E-value=12 Score=29.97 Aligned_cols=64 Identities=19% Similarity=0.188 Sum_probs=39.8
Q ss_pred ccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecchhhhcCCCcccEEEEe-eceeeEEe
Q 007326 413 EFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVC-ELCRLLRI 488 (608)
Q Consensus 413 ~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~-~~~~l~~l 488 (608)
..+.||..+-.. ...+.+++|++|++.+.. +|+ ...+++||.+--- .+.+ ....+. +.++++.+
T Consensus 45 ~~~~pG~~~~~H-~~~~E~~~Vl~G~~~~~~---~g~---~~~l~~GD~v~ip---~g~~--H~~~~~~~~~~~l~v 109 (119)
T 3lwc_A 45 GRYAPGQSLTET-MAVDDVMIVLEGRLSVST---DGE---TVTAGPGEIVYMP---KGET--VTIRSHEEGALTAYV 109 (119)
T ss_dssp EEECTTCEEEEE-CSSEEEEEEEEEEEEEEE---TTE---EEEECTTCEEEEC---TTCE--EEEEEEEEEEEEEEE
T ss_pred EEECCCCCcCcc-CCCCEEEEEEeCEEEEEE---CCE---EEEECCCCEEEEC---CCCE--EEEEcCCCCeEEEEE
Confidence 456677655433 367799999999999876 454 3579999976322 2333 334443 55555544
No 200
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=63.61 E-value=22 Score=27.74 Aligned_cols=67 Identities=15% Similarity=0.056 Sum_probs=42.1
Q ss_pred ccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecchhhhcCCCcccEEEEeeceeeEEe
Q 007326 411 HEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRI 488 (608)
Q Consensus 411 ~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l 488 (608)
....+.||...-..-.+...+++|++|.+.+.. +|+ ...+.+||.+=. .........+.+++.++.+
T Consensus 37 ~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~---~~~---~~~l~~Gd~~~i-----p~~~~H~~~~~~~~~~l~v 103 (116)
T 2pfw_A 37 VKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNV---DGV---IKVLTAGDSFFV-----PPHVDHGAVCPTGGILIDT 103 (116)
T ss_dssp EEEEECTTEEEEEECCSSEEEEEEEEECEEEEE---TTE---EEEECTTCEEEE-----CTTCCEEEEESSCEEEEEE
T ss_pred EEEEECCCCcCCcEECCcceEEEEEeeEEEEEE---CCE---EEEeCCCCEEEE-----CcCCceeeEeCCCcEEEEE
Confidence 345567777653323335689999999999876 443 367899997521 2223345666667776655
No 201
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=61.34 E-value=22 Score=30.36 Aligned_cols=62 Identities=8% Similarity=0.019 Sum_probs=40.6
Q ss_pred CCccCeEEEEEeeEEEEEEeccCC---cceeeEeeCCCCeecchhhhcCCCcccEEEEeeceeeEEechhh
Q 007326 425 GNVVDQLYFVCLGKLEEVGIEENG---TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQS 492 (608)
Q Consensus 425 g~~~~~ly~I~~G~v~~~~~~~~g---~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~~~ 492 (608)
-++.+.++++++|.+.+-..+ +| .+.....+++||+|=.- .+. +.+.++..++..+.+.+..
T Consensus 51 ~~~~eE~Fy~lkG~m~l~v~d-~g~~~~~~~dv~i~eGdmfllP---~gv--pHsP~r~~e~v~lviErkR 115 (176)
T 1zvf_A 51 INPTPEWFYQKKGSMLLKVVD-ETDAEPKFIDIIINEGDSYLLP---GNV--PHSPVRFADTVGIVVEQDR 115 (176)
T ss_dssp ECSSCEEEEEEESCEEEEEEE-CSSSSCEEEEEEECTTEEEEEC---TTC--CEEEEECTTCEEEEEEECC
T ss_pred CCCCceEEEEEeCEEEEEEEc-CCCcccceeeEEECCCCEEEcC---CCC--CcCCcccCCcEEEEEEecC
Confidence 344568999999999988755 24 22345689999988432 133 3355455777777776644
No 202
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=59.07 E-value=46 Score=25.48 Aligned_cols=62 Identities=15% Similarity=-0.035 Sum_probs=38.3
Q ss_pred cccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecchhhhcCCCcccEEEEeeceee
Q 007326 412 EEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRL 485 (608)
Q Consensus 412 ~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l 485 (608)
...+.||..-.. .+...+++|++|++.+.. .+|. ...+++||.+-- +...+...++.+++..
T Consensus 35 ~~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~i--~~g~---~~~l~~GD~i~i-----p~g~~H~~~n~~~~~~ 96 (101)
T 1o5u_A 35 IWEKEVSEFDWY--YDTNETCYILEGKVEVTT--EDGK---KYVIEKGDLVTF-----PKGLRCRWKVLEPVRK 96 (101)
T ss_dssp EEEECSEEEEEE--CSSCEEEEEEEEEEEEEE--TTCC---EEEEETTCEEEE-----CTTCEEEEEEEEEEEE
T ss_pred EEEeCCCccccc--CCceEEEEEEeCEEEEEE--CCCC---EEEECCCCEEEE-----CCCCcEEEEeCCCeeE
Confidence 445677765544 346789999999999876 1243 367899997632 2223344555555443
No 203
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=58.02 E-value=15 Score=28.43 Aligned_cols=68 Identities=12% Similarity=0.030 Sum_probs=40.6
Q ss_pred ccCCCeEEccCCccCeEEEEEeeEEEEEEeccCC-cceeeEeeCCCCeecchhhhcCCCcccEEEEeeceeeEEechhhH
Q 007326 415 FLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG-TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSF 493 (608)
Q Consensus 415 ~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g-~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~~~~ 493 (608)
..+|+...+..+....+++|++|.+.+.. +| + ...+.+||.+=-- .+.+ ....+.+++.++.++....
T Consensus 35 ~~~g~~~~H~H~~~~E~~~Vl~G~~~~~~---~~~~---~~~l~~Gd~~~ip---~~~~--H~~~~~~~~~~l~i~~~~~ 103 (107)
T 2i45_A 35 KLLGDYGWHTHGYSDKVLFAVEGDMAVDF---ADGG---SMTIREGEMAVVP---KSVS--HRPRSENGCSLVLIELSDP 103 (107)
T ss_dssp EEEEECCCBCC--CCEEEEESSSCEEEEE---TTSC---EEEECTTEEEEEC---TTCC--EEEEEEEEEEEEEEECC--
T ss_pred ECCCCCcceeCCCCCEEEEEEeCEEEEEE---CCCc---EEEECCCCEEEEC---CCCc--EeeEeCCCeEEEEEECCCc
Confidence 34555443444334799999999999876 33 3 3678999976211 2333 3444456788877776543
No 204
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=57.39 E-value=21 Score=29.24 Aligned_cols=65 Identities=8% Similarity=0.112 Sum_probs=42.5
Q ss_pred EccCCccCeEEEEEeeEEEEEEecc--CCcceeeEeeCCCCeecchhhhcCCCcccEEEEeeceeeEEechh
Q 007326 422 MEKGNVVDQLYFVCLGKLEEVGIEE--NGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQ 491 (608)
Q Consensus 422 ~~~g~~~~~ly~I~~G~v~~~~~~~--~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~~ 491 (608)
++..+..|.+|+|++|++.+...+. ++.+.-...+++|+++--- .--.....|.++|.++.+...
T Consensus 44 ~h~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~yvVP-----kGveH~p~a~~e~~vLLiEp~ 110 (140)
T 3d0j_A 44 LEIHHSTDEQFILSAGKAILITAEKENDKFNIELTLMEKGKVYNVP-----AECWFYSITQKDTKMMYVQDS 110 (140)
T ss_dssp EEEESSCCEEEEEEESCEEEEEEEEETTEEEEEEEECCTTCCEEEC-----TTCEEEEEECTTCEEEEEEES
T ss_pred hccCCCCCeEEEEEecEEEEEEecCcCCCCccceEEecCCCEEEeC-----CCccCcccCCCceEEEEEEeC
Confidence 4556677899999999999887532 1111234678999876322 112356667788888877654
No 205
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=54.69 E-value=27 Score=31.49 Aligned_cols=67 Identities=19% Similarity=0.087 Sum_probs=45.7
Q ss_pred cccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecchhhhcCCCcccEEEE-eeceeeEE
Q 007326 410 LHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQV-CELCRLLR 487 (608)
Q Consensus 410 ~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a-~~~~~l~~ 487 (608)
+....++||..+-..-.+.+.+++|++|.+.+.. +|+ ...+.+||.+=- ....+..+.+ .++++++.
T Consensus 155 ~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i---~g~---~~~l~~Gd~i~i-----p~~~~H~~~~~~~~~~~ll 222 (227)
T 3rns_A 155 MTIMSFWKGESLDPHKAPGDALVTVLDGEGKYYV---DGK---PFIVKKGESAVL-----PANIPHAVEAETENFKMLL 222 (227)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEEEEEEEE---TTE---EEEEETTEEEEE-----CTTSCEEEECCSSCEEEEE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeEEEEEEE---CCE---EEEECCCCEEEE-----CCCCcEEEEeCCCCEEEEE
Confidence 3456788888876555556789999999999876 444 367899997521 2223456666 77776654
No 206
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=54.19 E-value=11 Score=32.59 Aligned_cols=52 Identities=17% Similarity=0.162 Sum_probs=37.4
Q ss_pred cccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeec
Q 007326 410 LHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 463 (608)
Q Consensus 410 ~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 463 (608)
+....+.||.........++++++|++|++.+...+.+|. ....+++||++=
T Consensus 43 ~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~~~--~~~~l~~GDv~~ 94 (178)
T 1dgw_A 43 VLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGR--DTYKLDQGDAIK 94 (178)
T ss_dssp EEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEE--EEEEEETTEEEE
T ss_pred EEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeCCCc--EEEEECCCCEEE
Confidence 4455678887765543345799999999999887655543 356899999763
No 207
>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A
Probab=52.49 E-value=18 Score=37.10 Aligned_cols=60 Identities=13% Similarity=0.202 Sum_probs=45.9
Q ss_pred HHHHHHHcccccccCCCeEEcc-CCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCee
Q 007326 403 INQIVIRLHEEFFLPGEVIMEK-GNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 403 l~~l~~~~~~~~~~~g~~I~~~-g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
+..|-..+....+.||-+.-.- ...++.+.+|++|.+.+...+.+|+......+.+||+|
T Consensus 389 L~~LgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~G~~v~~~~L~~GDV~ 449 (531)
T 3fz3_A 389 LRFLRLSAERGFFYRNGIYSPHWNVNAHSVVYVIRGNARVQVVNENGDAILDQEVQQGQLF 449 (531)
T ss_dssp HHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred cccCceeEEEEEeecCccccceEcCCCCEEEEEEeCcEEEEEEeCCCcEEEEEEecCCeEE
Confidence 3444446677788898877433 23467999999999999888888877677899999987
No 208
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=52.21 E-value=15 Score=31.68 Aligned_cols=47 Identities=15% Similarity=0.080 Sum_probs=29.5
Q ss_pred ccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCee
Q 007326 411 HEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 411 ~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
....++||...-.-......+.+|++|++.+.. .+|+ ...+++||.+
T Consensus 82 ~~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~l--d~ge---~~~L~~GDsi 128 (172)
T 3es1_A 82 RVVDMLPGKESPMHRTNSIDYGIVLEGEIELEL--DDGA---KRTVRQGGII 128 (172)
T ss_dssp EEEEECTTCBCCCBCCSEEEEEEEEESCEEEEC--GGGC---EEEECTTCEE
T ss_pred EEEEECCCCCCCCeecCceEEEEEEeCEEEEEE--CCCe---EEEECCCCEE
Confidence 334566665432222233467899999999875 1243 2678999997
No 209
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}
Probab=51.71 E-value=16 Score=37.46 Aligned_cols=59 Identities=10% Similarity=0.142 Sum_probs=43.1
Q ss_pred HHHHHHcccccccCCCeEEccCC-ccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCee
Q 007326 404 NQIVIRLHEEFFLPGEVIMEKGN-VVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 404 ~~l~~~~~~~~~~~g~~I~~~g~-~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
..+-..+....+.||..+-.--. .++.+++|++|.+.+...+.+|.+.....+.+||++
T Consensus 368 ~~l~is~a~v~L~PG~~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~G~~~~~~~l~~GDv~ 427 (510)
T 3c3v_A 368 RWLGLSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGNRVYDEELQEGHVL 427 (510)
T ss_dssp HHHTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred ccceEEEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEeCCCCEEEeEEEcCCcEE
Confidence 34444566677888886543322 367999999999999887777776556689999987
No 210
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=50.84 E-value=38 Score=25.39 Aligned_cols=54 Identities=15% Similarity=0.183 Sum_probs=34.9
Q ss_pred CccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecchhhhcCCCcccEEEEeeceeeEEech
Q 007326 426 NVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDK 490 (608)
Q Consensus 426 ~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~ 490 (608)
+....+++|++|.+.+.. +|+ ...+.+||.+= + .........+.+++.++.++.
T Consensus 48 ~~~~e~~~v~~G~~~~~~---~~~---~~~l~~Gd~~~----i-p~~~~H~~~~~~~~~~l~i~~ 101 (102)
T 3d82_A 48 ADTDEVFIVMEGTLQIAF---RDQ---NITLQAGEMYV----I-PKGVEHKPMAKEECKIMIIEP 101 (102)
T ss_dssp TTCCEEEEEEESEEEEEC---SSC---EEEEETTEEEE----E-CTTCCBEEEEEEEEEEEEEEE
T ss_pred CCCcEEEEEEeCEEEEEE---CCE---EEEEcCCCEEE----E-CCCCeEeeEcCCCCEEEEEEc
Confidence 333789999999998765 343 25678998752 2 222334555557888877653
No 211
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=50.24 E-value=20 Score=36.76 Aligned_cols=60 Identities=10% Similarity=0.087 Sum_probs=43.0
Q ss_pred HHHHHHHcccccccCCCeEEccC-CccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCee
Q 007326 403 INQIVIRLHEEFFLPGEVIMEKG-NVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 403 l~~l~~~~~~~~~~~g~~I~~~g-~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
+..+-..+....+.||..+-.-- ..++.+++|++|.+.+...+.+|+......+.+||++
T Consensus 362 L~~lgls~a~v~l~pG~~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~g~~~~~~~l~~GDv~ 422 (493)
T 2d5f_A 362 LRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNAQGNAVFDGELRRGQLL 422 (493)
T ss_dssp HHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred ccccceEEEEEEccCCceeeeeECCCCCEEEEEEeceEEEEEEcCCCCEEEeEEEcCCCEE
Confidence 34444466677788887654332 3367999999999999887777765445679999987
No 212
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=50.07 E-value=20 Score=36.52 Aligned_cols=54 Identities=9% Similarity=0.093 Sum_probs=40.1
Q ss_pred HcccccccCCCeEEccCCc-cCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCee
Q 007326 409 RLHEEFFLPGEVIMEKGNV-VDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 409 ~~~~~~~~~g~~I~~~g~~-~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
.+....+.||..+-.--.+ ++.+++|++|.+.+...+.+|.+.....+.+||++
T Consensus 339 s~~~v~l~pGa~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~G~~~~~~~l~~GDv~ 393 (476)
T 1fxz_A 339 SAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRVL 393 (476)
T ss_dssp CEEEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred eEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEecCCCEEeeeEEcCCCEE
Confidence 4556678888765433223 57999999999999887777766556689999987
No 213
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=49.21 E-value=23 Score=28.15 Aligned_cols=77 Identities=16% Similarity=0.180 Sum_probs=45.7
Q ss_pred cccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecchhhhcCCCcccEEEEeec-eeeEEe
Q 007326 410 LHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCEL-CRLLRI 488 (608)
Q Consensus 410 ~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~-~~l~~l 488 (608)
+....+.||..+-..-.+...+++|++|.+.+.. +|+ ...+.+||.+=.- .+. .....+.++ +.++.+
T Consensus 43 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~---~~~---~~~l~~Gd~~~ip---~~~--~H~~~~~~~~~~~l~v 111 (126)
T 4e2g_A 43 LNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTI---GEE---TRVLRPGMAYTIP---GGV--RHRARTFEDGCLVLDI 111 (126)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEECEEEEE---TTE---EEEECTTEEEEEC---TTC--CEEEECCTTCEEEEEE
T ss_pred EEEEEECCCCcCCCccCCCceEEEEEEeEEEEEE---CCE---EEEeCCCCEEEEC---CCC--cEEeEECCCCEEEEEE
Confidence 3445677777664444445789999999999876 443 2678999875221 122 344455455 544322
Q ss_pred ---chhhHHHHH
Q 007326 489 ---DKQSFTNII 497 (608)
Q Consensus 489 ---~~~~~~~l~ 497 (608)
+++++.+.+
T Consensus 112 ~~p~~~d~~~~~ 123 (126)
T 4e2g_A 112 FSPPREDYARMA 123 (126)
T ss_dssp EESCCHHHHHHH
T ss_pred ECCCCcchhhhh
Confidence 345655544
No 214
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=49.12 E-value=24 Score=27.16 Aligned_cols=46 Identities=26% Similarity=0.278 Sum_probs=32.2
Q ss_pred ccccccCCCeEEcc--CCc-cCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCee
Q 007326 411 HEEFFLPGEVIMEK--GNV-VDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 411 ~~~~~~~g~~I~~~--g~~-~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
....+.||..+-.. -.. ...+++|++|.+.+.. +|+ ...+.+||++
T Consensus 24 ~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~---~~~---~~~l~~Gd~~ 72 (113)
T 2gu9_A 24 AEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIV---DGH---TQALQAGSLI 72 (113)
T ss_dssp EEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEE---TTE---EEEECTTEEE
T ss_pred EEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEE---CCE---EEEeCCCCEE
Confidence 34467788766443 233 5789999999999876 343 3678999876
No 215
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=47.41 E-value=29 Score=26.11 Aligned_cols=46 Identities=17% Similarity=0.216 Sum_probs=31.0
Q ss_pred ccccccCCCeEEccCCc-cCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCee
Q 007326 411 HEEFFLPGEVIMEKGNV-VDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 411 ~~~~~~~g~~I~~~g~~-~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
....+.||..+-..-.. .+.+++|++|.+.+.. +|+ ...+.+||.+
T Consensus 31 ~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~---~~~---~~~l~~Gd~~ 77 (105)
T 1v70_A 31 DLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRV---GEE---EALLAPGMAA 77 (105)
T ss_dssp EEEEECTTCEEEEECCSSCEEEEEEEESCEEEEE---TTE---EEEECTTCEE
T ss_pred EEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEE---CCE---EEEeCCCCEE
Confidence 34456777766433323 3579999999999875 343 3678999976
No 216
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=46.26 E-value=35 Score=31.60 Aligned_cols=65 Identities=11% Similarity=0.041 Sum_probs=43.0
Q ss_pred eEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecchhhhcCCCcccEEEEeeceeeEEechhh
Q 007326 420 VIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQS 492 (608)
Q Consensus 420 ~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~~~ 492 (608)
..++ -+..+++|++++|.+.+-..+ +|+ ..--.+++|++|=.- ..-+++-++.++|..+.+.+..
T Consensus 44 ~d~H-~~~~dE~FyqlkG~m~l~~~d-~g~-~~~V~i~eGemfllP-----~gv~HsP~r~~et~gLviE~~R 108 (286)
T 2qnk_A 44 KDYH-IEEGEEVFYQLEGDMVLRVLE-QGK-HRDVVIRQGEIFLLP-----ARVPHSPQRFANTVGLVVERRR 108 (286)
T ss_dssp CCEE-ECSSCEEEEEEESCEEEEEEE-TTE-EEEEEECTTEEEEEC-----TTCCEEEEECTTCEEEEEEECC
T ss_pred ccCc-CCCCCeEEEEEeCeEEEEEEe-CCc-eeeEEECCCeEEEeC-----CCCCcCCcccCCeEEEEEeecC
Confidence 4555 556789999999999988754 343 344678999987322 2223455556777777776543
No 217
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A
Probab=46.02 E-value=26 Score=35.55 Aligned_cols=60 Identities=5% Similarity=0.121 Sum_probs=44.6
Q ss_pred HHHHHHHcccccccCCCeEEccC-CccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCee
Q 007326 403 INQIVIRLHEEFFLPGEVIMEKG-NVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 403 l~~l~~~~~~~~~~~g~~I~~~g-~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
+..+-..+....+.||.+...-= -.+.++++|++|++.+...+.+|....-..+.+||+|
T Consensus 317 L~~l~iS~a~v~l~pG~~~~pH~Hp~A~Ei~yV~~G~~~v~vv~~~g~~~~~~~l~~GDv~ 377 (459)
T 2e9q_A 317 LRQVRLSAERGVLYSNAMVAPHYTVNSHSVMYATRGNARVQVVDNFGQSVFDGEVREGQVL 377 (459)
T ss_dssp HHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred ccccccceEEEEeeCCcCccceECCCCCEEEEEEeeEEEEEEEeCCCCEEEeeEEeCCcEE
Confidence 44444566677788887754332 3467999999999999988888876555689999987
No 218
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=45.34 E-value=25 Score=27.97 Aligned_cols=44 Identities=14% Similarity=0.107 Sum_probs=29.5
Q ss_pred ccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecc
Q 007326 415 FLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGE 464 (608)
Q Consensus 415 ~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe 464 (608)
..||..-... +..+++++|++|.+.+.. ++|. ...+++||.+--
T Consensus 49 ~tPG~~~~~~-~~~~E~~~iLeG~~~lt~--ddG~---~~~l~aGD~~~~ 92 (116)
T 3es4_A 49 AEPGIYNYAG-RDLEETFVVVEGEALYSQ--ADAD---PVKIGPGSIVSI 92 (116)
T ss_dssp ECSEEEEECC-CSEEEEEEEEECCEEEEE--TTCC---CEEECTTEEEEE
T ss_pred cCCceeECee-CCCcEEEEEEEeEEEEEe--CCCe---EEEECCCCEEEE
Confidence 4455544443 233589999999999875 3454 367899998743
No 219
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=45.14 E-value=20 Score=28.85 Aligned_cols=44 Identities=14% Similarity=0.102 Sum_probs=29.5
Q ss_pred cccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeec
Q 007326 414 FFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 463 (608)
Q Consensus 414 ~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 463 (608)
...||..-.+..+ .+.+++|++|++.+.. ++|.. ..+++||.+-
T Consensus 55 ~~~pG~~~~~~~~-~~E~~~Vl~G~~~l~~--~~g~~---~~l~~GD~~~ 98 (123)
T 3bcw_A 55 ESTSGSFQSNTTG-YIEYCHIIEGEARLVD--PDGTV---HAVKAGDAFI 98 (123)
T ss_dssp EEEEEEEECCCTT-EEEEEEEEEEEEEEEC--TTCCE---EEEETTCEEE
T ss_pred EECCCceeeEcCC-CcEEEEEEEEEEEEEE--CCCeE---EEECCCCEEE
Confidence 3455655544332 2789999999999875 24433 5789999874
No 220
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=44.81 E-value=61 Score=28.15 Aligned_cols=48 Identities=15% Similarity=0.088 Sum_probs=30.6
Q ss_pred ccccCCCeEEc---cCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCee
Q 007326 413 EFFLPGEVIME---KGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 413 ~~~~~g~~I~~---~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
..+.||...-. ...+...+++|++|.+.+... ++.......+++||.+
T Consensus 122 ~~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~~--~~~~~~~~~l~~GD~~ 172 (198)
T 2bnm_A 122 VDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWG--DKENPKEALLPTGASM 172 (198)
T ss_dssp EEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEES--CTTSCEEEEECTTCEE
T ss_pred EEEcCCCCCcccccccCCCeEEEEEEeeeEEEEEC--CcCCcccEEECCCCEE
Confidence 34567665431 223346899999999998762 2212234689999976
No 221
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=44.44 E-value=14 Score=38.39 Aligned_cols=17 Identities=12% Similarity=0.294 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007326 177 YLLWIRLYRVRKVSQFF 193 (608)
Q Consensus 177 ~l~llrl~rl~r~~~~~ 193 (608)
++|++|++|++|+.+..
T Consensus 307 ~lrvlRllRvlRilkL~ 323 (514)
T 2r9r_B 307 VVQIFRIMRILRIFKLS 323 (514)
T ss_dssp HHHHHHHHGGGGGGGGG
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34445555555554443
No 222
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=44.41 E-value=40 Score=26.63 Aligned_cols=48 Identities=21% Similarity=0.146 Sum_probs=31.4
Q ss_pred cccccccCCCeEEccCCc-cCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCee
Q 007326 410 LHEEFFLPGEVIMEKGNV-VDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 410 ~~~~~~~~g~~I~~~g~~-~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
+....+.||..+-..-.. ...+++|++|.+.+.. .+|+ ...+++||++
T Consensus 41 ~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~--~~~~---~~~l~~Gd~~ 89 (125)
T 3h8u_A 41 VVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQ--GNGI---VTHLKAGDIA 89 (125)
T ss_dssp EEEEEECTTCEECCC-CTTCEEEEEEEECEEEEEC--STTC---EEEEETTEEE
T ss_pred EEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEE--CCCe---EEEeCCCCEE
Confidence 344567777776444334 3679999999998764 1343 3578899975
No 223
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=43.60 E-value=21 Score=29.14 Aligned_cols=63 Identities=11% Similarity=-0.036 Sum_probs=37.7
Q ss_pred ccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecchhhhcCCCcccEEEEeeceeeEEe
Q 007326 413 EFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRI 488 (608)
Q Consensus 413 ~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l 488 (608)
..+.||..-.+ ...+.+++|++|.+.+.. +|+. ..+++||.+--- .+.+ ...+..++++.+.+
T Consensus 62 ~~~~pG~~~~h--~~~~E~~~VLeG~~~l~~---~g~~---~~l~~GD~i~~p---~g~~--h~~~~~~~~~~l~v 124 (133)
T 2pyt_A 62 MQWDNAFFPWT--LNYDEIDMVLEGELHVRH---EGET---MIAKAGDVMFIP---KGSS--IEFGTPTSVRFLYV 124 (133)
T ss_dssp EEEEEEEEEEE--CSSEEEEEEEEEEEEEEE---TTEE---EEEETTCEEEEC---TTCE--EEEEEEEEEEEEEE
T ss_pred EEECCCCcccc--CCCCEEEEEEECEEEEEE---CCEE---EEECCCcEEEEC---CCCE--EEEEeCCCEEEEEE
Confidence 35667732222 235789999999999876 4543 479999977322 1332 33334555655443
No 224
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=43.10 E-value=69 Score=26.71 Aligned_cols=52 Identities=13% Similarity=0.116 Sum_probs=32.7
Q ss_pred ccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecchhhhcCCCcccEEEEeeceeeEEec
Q 007326 427 VVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRID 489 (608)
Q Consensus 427 ~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~ 489 (608)
..+.+++|++|++.+.. +|+ ...+++||.+=-- .+.+ ....+.++|+.+.+-
T Consensus 83 ~~eE~~yVLeG~~~l~i---~g~---~~~l~~GD~i~iP---~G~~--h~~~n~~~a~~l~V~ 134 (151)
T 4axo_A 83 NYDEIDYVIDGTLDIII---DGR---KVSASSGELIFIP---KGSK--IQFSVPDYARFIYVT 134 (151)
T ss_dssp SSEEEEEEEEEEEEEEE---TTE---EEEEETTCEEEEC---TTCE--EEEEEEEEEEEEEEE
T ss_pred CCcEEEEEEEeEEEEEE---CCE---EEEEcCCCEEEEC---CCCE--EEEEeCCCEEEEEEE
Confidence 35689999999999875 554 3678999976211 1222 333344666665543
No 225
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=42.93 E-value=57 Score=27.66 Aligned_cols=45 Identities=20% Similarity=0.118 Sum_probs=31.0
Q ss_pred cccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCee
Q 007326 412 EEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 412 ~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
...+.||..+-..--....+++|++|.+.+.. +|+ ...+.+||++
T Consensus 60 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i---~~~---~~~l~~Gd~i 104 (167)
T 3ibm_A 60 YFEVEPGGYTTLERHEHTHVVMVVRGHAEVVL---DDR---VEPLTPLDCV 104 (167)
T ss_dssp EEEECTTCBCCCBBCSSCEEEEEEESEEEEEE---TTE---EEEECTTCEE
T ss_pred EEEECCCCCCCCccCCCcEEEEEEeCEEEEEE---CCE---EEEECCCCEE
Confidence 34566666543333346789999999999875 443 4678999976
No 226
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=41.45 E-value=32 Score=29.38 Aligned_cols=59 Identities=15% Similarity=0.067 Sum_probs=38.7
Q ss_pred ccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecchhhhcCCCcccEEEEee-ceeeEEechhh
Q 007326 427 VVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCE-LCRLLRIDKQS 492 (608)
Q Consensus 427 ~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~-~~~l~~l~~~~ 492 (608)
+.+.++++++|.+.+...+ +|+ .....+++||+|=.- .|. +.+.++.+ ++..+.+.+..
T Consensus 54 ~~dE~FyvlkG~m~i~v~d-~g~-~~~v~l~eGE~f~lP---~gv--pH~P~r~~~e~~~lviE~~r 113 (174)
T 1yfu_A 54 PLEEFFYQLRGNAYLNLWV-DGR-RERADLKEGDIFLLP---PHV--RHSPQRPEAGSACLVIERQR 113 (174)
T ss_dssp SSCEEEEEEESCEEEEEEE-TTE-EEEEEECTTCEEEEC---TTC--CEEEEBCCTTCEEEEEEECC
T ss_pred CCceEEEEEeeEEEEEEEc-CCc-eeeEEECCCCEEEeC---CCC--CcCccccCCCCEEEEEEeCC
Confidence 4678999999999987754 243 344689999988432 133 33455555 67777766543
No 227
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=39.83 E-value=47 Score=29.21 Aligned_cols=53 Identities=17% Similarity=0.177 Sum_probs=34.6
Q ss_pred cccccccCCCeEEc-cCCccCeEEEEEeeEEEEEEeccC--CcceeeEeeCCCCee
Q 007326 410 LHEEFFLPGEVIME-KGNVVDQLYFVCLGKLEEVGIEEN--GTEDYVSYLHPNSSF 462 (608)
Q Consensus 410 ~~~~~~~~g~~I~~-~g~~~~~ly~I~~G~v~~~~~~~~--g~~~~~~~l~~G~~f 462 (608)
+....+.||...-. .....+++++|++|++.+...+.+ |.+.....+.+||.+
T Consensus 74 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~~~~~l~~GD~~ 129 (201)
T 1fi2_A 74 MNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETF 129 (201)
T ss_dssp EEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCEEEEEEETTCEE
T ss_pred EEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeEEEEEECCCCEE
Confidence 34456777775432 233357999999999998764332 133335789999977
No 228
>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}
Probab=39.67 E-value=37 Score=34.66 Aligned_cols=60 Identities=7% Similarity=0.108 Sum_probs=44.5
Q ss_pred HHHHHHHcccccccCCCeEEccC-CccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCee
Q 007326 403 INQIVIRLHEEFFLPGEVIMEKG-NVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 403 l~~l~~~~~~~~~~~g~~I~~~g-~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
+..+-..+....+.||-+.---= -.+..+.+|++|.+.+...+.+|+...-..+.+||+|
T Consensus 353 L~~lgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~g~~~f~~~l~~GDV~ 413 (496)
T 3ksc_A 353 LRWLKLSAEHGSLHKNAMFVPHYNLNANSIIYALKGRARLQVVNCNGNTVFDGELEAGRAL 413 (496)
T ss_dssp HHHHTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred ccccceeEEEEEeeCCeEECCeeCCCCCEEEEEEeceEEEEEEeCCCcEEEEEEecCCeEE
Confidence 33443456667788887763332 3467999999999999988888876556789999987
No 229
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=39.62 E-value=24 Score=26.59 Aligned_cols=47 Identities=21% Similarity=0.167 Sum_probs=29.8
Q ss_pred cccccCCCeE-EccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCee
Q 007326 412 EEFFLPGEVI-MEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 412 ~~~~~~g~~I-~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
...++||... .+..+..+.+++|++|.+.+.. .+|. ....+.+||.+
T Consensus 22 ~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~--~~g~--~~~~l~~Gd~~ 69 (97)
T 2fqp_A 22 EWRFPPGGETGWHRHSMDYVVVPMTTGPLLLET--PEGS--VTSQLTRGVSY 69 (97)
T ss_dssp EEEECTTCBCCSEECCSCEEEEESSCEEEEEEE--TTEE--EEEEECTTCCE
T ss_pred EEEECCCCCCCCEECCCCcEEEEEeecEEEEEe--CCCC--EEEEEcCCCEE
Confidence 3456777654 2222222359999999999875 2331 23578999976
No 230
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=39.49 E-value=49 Score=29.57 Aligned_cols=17 Identities=24% Similarity=0.360 Sum_probs=12.4
Q ss_pred hhHHHHHHHHHHHHHHH
Q 007326 172 KEAVRYLLWIRLYRVRK 188 (608)
Q Consensus 172 ~~~~~~l~llrl~rl~r 188 (608)
...+|++|++|++|+.+
T Consensus 99 lr~lRllRllR~~r~~~ 115 (223)
T 1orq_C 99 FRLVRLLRFLRILLIIS 115 (223)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34577888888888766
No 231
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=39.33 E-value=27 Score=29.60 Aligned_cols=45 Identities=18% Similarity=0.088 Sum_probs=30.6
Q ss_pred cccccCCCeE--EccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCee
Q 007326 412 EEFFLPGEVI--MEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 412 ~~~~~~g~~I--~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
...+.||... .+.....+.+++|++|++.+.. +|+ ...+.+||.+
T Consensus 47 ~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~---~~~---~~~l~~GD~i 93 (163)
T 3i7d_A 47 LVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVD---DQG---EHPMVPGDCA 93 (163)
T ss_dssp EEEECTTCBSSSSEEESSCCEEEEEEESCEEEEE---TTE---EEEECTTCEE
T ss_pred EEEECCCCcCCCCccCCCCcEEEEEEECEEEEEE---CCE---EEEeCCCCEE
Confidence 4456677744 2333334689999999999876 343 3678999975
No 232
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=39.03 E-value=26 Score=29.51 Aligned_cols=46 Identities=15% Similarity=0.093 Sum_probs=31.3
Q ss_pred ccccccCCCe-E-EccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCee
Q 007326 411 HEEFFLPGEV-I-MEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 411 ~~~~~~~g~~-I-~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
....+.||.. . .+.....+.+++|++|.+.+.. +|+ ...+++||++
T Consensus 49 ~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~---~~~---~~~l~~Gd~i 96 (162)
T 3l2h_A 49 HLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTM---END---QYPIAPGDFV 96 (162)
T ss_dssp EEEEECTTCBSSSSBEESSCCEEEEEEESCEEEEE---TTE---EEEECTTCEE
T ss_pred EEEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEE---CCE---EEEeCCCCEE
Confidence 3355677763 2 2222345789999999999875 443 3678999976
No 233
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=38.62 E-value=37 Score=33.11 Aligned_cols=50 Identities=10% Similarity=0.067 Sum_probs=35.5
Q ss_pred cccccCCCeEE-ccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCee
Q 007326 412 EEFFLPGEVIM-EKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 412 ~~~~~~g~~I~-~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
...+.||...- +.....+.+++|++|++.+...+.+|+. ....+++||++
T Consensus 56 ~~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g~~-~~~~l~~GD~~ 106 (361)
T 2vqa_A 56 YMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKV-EIADVDKGGLW 106 (361)
T ss_dssp EEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECTTSCE-EEEEEETTEEE
T ss_pred EEEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCCcE-EEEEEcCCCEE
Confidence 44567787643 2333378999999999999886666643 33689999975
No 234
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=37.69 E-value=37 Score=33.52 Aligned_cols=52 Identities=10% Similarity=0.158 Sum_probs=36.1
Q ss_pred cccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCee
Q 007326 410 LHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 410 ~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
+....+.||...-..-.+...+++|++|++.+...+.+|+. ....+++||++
T Consensus 81 ~~~~~l~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~g~~-~~~~l~~GD~~ 132 (385)
T 1j58_A 81 SVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRS-FIDDVGEGDLW 132 (385)
T ss_dssp EEEEEECTTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCE-EEEEEETTEEE
T ss_pred EEEEEECCCCCCCCccCChheEEEEEeeeEEEEEEeCCCcE-EEEEeCCCCEE
Confidence 34456678776533323367999999999998876656653 23489999976
No 235
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=37.60 E-value=63 Score=29.46 Aligned_cols=49 Identities=8% Similarity=-0.047 Sum_probs=35.9
Q ss_pred HcccccccCCCeEEc-cCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeec
Q 007326 409 RLHEEFFLPGEVIME-KGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 463 (608)
Q Consensus 409 ~~~~~~~~~g~~I~~-~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 463 (608)
.+....++||..+-. .-....+.++|++|++.+.. +|+. ..+++||++-
T Consensus 166 ~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~---~~~~---~~l~~GD~~~ 215 (246)
T 1sfn_A 166 MVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKL---EENY---YPVTAGDIIW 215 (246)
T ss_dssp EEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEE---TTEE---EEEETTCEEE
T ss_pred EEEEEEECCCCccCcccCCCceEEEEEEECEEEEEE---CCEE---EEcCCCCEEE
Confidence 456667889887754 34456689999999999875 4543 5899999763
No 236
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=37.59 E-value=25 Score=29.32 Aligned_cols=17 Identities=18% Similarity=0.346 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007326 177 YLLWIRLYRVRKVSQFF 193 (608)
Q Consensus 177 ~l~llrl~rl~r~~~~~ 193 (608)
++|++|++|+.|+.++.
T Consensus 111 vlRllRv~Rllrl~r~~ 127 (147)
T 2kyh_A 111 LFRLVRLLRFLRILLII 127 (147)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 237
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=37.54 E-value=54 Score=30.36 Aligned_cols=69 Identities=13% Similarity=0.033 Sum_probs=42.5
Q ss_pred ccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccC-CcceeeEeeCCCCeecchhhhcCCCcccEEEEeeceeeEEec
Q 007326 411 HEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEEN-GTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRID 489 (608)
Q Consensus 411 ~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~-g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~ 489 (608)
-...+.||.---......+++.+|++|++.+.. + |++ ..+++|+++=.- .+. ..+.+..++++++.+.
T Consensus 73 ~lv~l~PGg~s~~~~h~~EEfiyVleG~l~l~l---~~g~~---~~L~~Gds~y~p---~~~--~H~~~N~~~Ar~l~V~ 141 (266)
T 4e2q_A 73 YLAKMKEMSSSGLPPQDIERLIFVVEGAVTLTN---TSSSS---KKLTVDSYAYLP---PNF--HHSLDCVESATLVVFE 141 (266)
T ss_dssp EEEEECSSEECCCCCTTEEEEEEEEEECEEEEC-----CCC---EEECTTEEEEEC---TTC--CCEEEESSCEEEEEEE
T ss_pred EEEEECcCCcCCCCCCCCeEEEEEEEEEEEEEE---CCCcE---EEEcCCCEEEEC---CCC--CEEEEeCCCEEEEEEE
Confidence 345567766532222345689999999999875 4 443 578999876222 122 3344455778877775
Q ss_pred h
Q 007326 490 K 490 (608)
Q Consensus 490 ~ 490 (608)
+
T Consensus 142 k 142 (266)
T 4e2q_A 142 R 142 (266)
T ss_dssp E
T ss_pred e
Confidence 4
No 238
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=36.85 E-value=30 Score=29.10 Aligned_cols=44 Identities=9% Similarity=-0.086 Sum_probs=29.4
Q ss_pred ccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCee
Q 007326 413 EFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 413 ~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
..+.||...-..-.....+++|++|++.+.. +|+ ...+.+||++
T Consensus 49 ~~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v---~g~---~~~l~~Gd~i 92 (156)
T 3kgz_A 49 FEVDEGGYSTLERHAHVHAVMIHRGHGQCLV---GET---ISDVAQGDLV 92 (156)
T ss_dssp EEEEEEEECCCBBCSSCEEEEEEEEEEEEEE---TTE---EEEEETTCEE
T ss_pred EEECCCCccCceeCCCcEEEEEEeCEEEEEE---CCE---EEEeCCCCEE
Confidence 3456665543333345579999999999876 443 3678899876
No 239
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=36.79 E-value=29 Score=29.55 Aligned_cols=44 Identities=14% Similarity=0.012 Sum_probs=29.7
Q ss_pred ccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCee
Q 007326 413 EFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 413 ~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
..+.||..+-..-.....+++|++|++.+.. +|+ ...+.+||++
T Consensus 58 ~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v---~g~---~~~l~~GD~i 101 (166)
T 3jzv_A 58 FEVGPGGHSTLERHQHAHGVMILKGRGHAMV---GRA---VSAVAPYDLV 101 (166)
T ss_dssp EEEEEEEECCCBBCSSCEEEEEEEECEEEEE---TTE---EEEECTTCEE
T ss_pred EEECCCCccCceeCCCcEEEEEEeCEEEEEE---CCE---EEEeCCCCEE
Confidence 3456666543333345679999999999875 443 3678999976
No 240
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=36.66 E-value=1e+02 Score=24.18 Aligned_cols=76 Identities=14% Similarity=-0.022 Sum_probs=42.3
Q ss_pred ccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecchhhhcCCCcccEEEEe--ecee--eEEe
Q 007326 413 EFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVC--ELCR--LLRI 488 (608)
Q Consensus 413 ~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~--~~~~--l~~l 488 (608)
..+.||...-..-.....+++|++|.+.+.. +|+ ...+++||++=-- .+.+ ....+. ++++ ++.+
T Consensus 39 ~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i---~~~---~~~l~~Gd~~~i~---~~~~--H~~~~~~~~~~~~~~i~f 107 (128)
T 4i4a_A 39 CIVRPETKSFRHSHNEYELFIVIQGNAIIRI---NDE---DFPVTKGDLIIIP---LDSE--HHVINNNQEDFHFYTIWW 107 (128)
T ss_dssp EEECTTEECCCBCCSSEEEEEEEESEEEEEE---TTE---EEEEETTCEEEEC---TTCC--EEEEECSSSCEEEEEEEE
T ss_pred EEECCCCccCCEecCCeEEEEEEeCEEEEEE---CCE---EEEECCCcEEEEC---CCCc--EEeEeCCCCCEEEEEEEE
Confidence 3455555332222245589999999999876 443 3678999876221 1333 334443 3334 3455
Q ss_pred chhhHHHHHHH
Q 007326 489 DKQSFTNIIDI 499 (608)
Q Consensus 489 ~~~~~~~l~~~ 499 (608)
+.+-+..++..
T Consensus 108 ~~~~~~~~~~~ 118 (128)
T 4i4a_A 108 DKESTLNFLTR 118 (128)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHh
Confidence 66555555544
No 241
>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A {Antonospora locustae}
Probab=35.95 E-value=99 Score=26.60 Aligned_cols=39 Identities=21% Similarity=0.246 Sum_probs=30.8
Q ss_pred cccccccCCCHHHHHHHHHHcccccccCCCeEEccCCccCeEEEE
Q 007326 390 EKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFV 434 (608)
Q Consensus 390 ~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~I 434 (608)
-++|.|++++-.+-+++... .+|++|+++...++++-+.
T Consensus 12 I~HP~F~n~s~~qAe~~L~~------~~G~~liRPSsk~~~ltit 50 (178)
T 2xp1_A 12 YKHPLFKNFNVTESENYLRS------STDDFLIRKGSRHGYCVLV 50 (178)
T ss_dssp GGSTTEECCCHHHHHHHHHH------SSCCEEEEECSSTTEEEEE
T ss_pred ccCCCcCCCCHHHHHHHHhc------CCCCEEEeecCCCCcEEEE
Confidence 36899999999888877776 2599999999987764433
No 242
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=35.62 E-value=27 Score=35.24 Aligned_cols=53 Identities=19% Similarity=0.189 Sum_probs=39.4
Q ss_pred HcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeec
Q 007326 409 RLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 463 (608)
Q Consensus 409 ~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 463 (608)
.+....+.||..+-..-..++++++|++|++.+...+.++. ....+++||++-
T Consensus 87 s~~~~~l~Pgg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~--~~~~l~~GDv~~ 139 (445)
T 2cav_A 87 RVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGR--DTYKLDQGDAIK 139 (445)
T ss_dssp EEEEEEECSSEEEEEEEESSEEEEEEEESEEEEEEEETTEE--EEEEEETTEEEE
T ss_pred EEEEEEECCCcCccCcCCCCceEEEEEeCEEEEEEEeCCCC--EEEEecCCCEEE
Confidence 34556788988776665557799999999998877655443 467899999773
No 243
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=35.54 E-value=1e+02 Score=23.24 Aligned_cols=66 Identities=20% Similarity=0.165 Sum_probs=37.7
Q ss_pred cccccCCCeEEccCCc-cCeE-EEEEeeEEEEEEeccCCcceeeEeeCCCCeecchhhhcCCCcccEEEEeeceeeEE
Q 007326 412 EEFFLPGEVIMEKGNV-VDQL-YFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLR 487 (608)
Q Consensus 412 ~~~~~~g~~I~~~g~~-~~~l-y~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~ 487 (608)
...+.||..+-..-.. ...+ ++|++|.+.+.. .+|+ ...+.+||.+=- .........+.+++.++.
T Consensus 37 ~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~--~~~~---~~~l~~Gd~~~i-----p~~~~H~~~~~~~~~~l~ 104 (110)
T 2q30_A 37 SFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVG--DGDA---VIPAPRGAVLVA-----PISTPHGVRAVTDMKVLV 104 (110)
T ss_dssp EEEECTTCEEEEECCSSSCEEEEEEEESCEEEEC--GGGC---EEEECTTEEEEE-----ETTSCEEEEESSSEEEEE
T ss_pred EEEECCCCcCCcccCCCCccEEEEEEeCEEEEEe--CCCE---EEEECCCCEEEe-----CCCCcEEEEEcCCcEEEE
Confidence 3456777765433222 2456 899999998765 1133 257899986521 222234555666655443
No 244
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=34.46 E-value=38 Score=26.45 Aligned_cols=44 Identities=9% Similarity=0.018 Sum_probs=27.6
Q ss_pred cccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCee
Q 007326 414 FFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 414 ~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
.+.||...-..-.....+++|++|.+.+.. +|+. ...+.+||++
T Consensus 33 ~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i---~~~~--~~~l~~Gd~i 76 (117)
T 2b8m_A 33 VLPRGEQMPKHYSNSYVHLIIIKGEMTLTL---EDQE--PHNYKEGNIV 76 (117)
T ss_dssp EEETTCBCCCEECSSCEEEEEEESEEEEEE---TTSC--CEEEETTCEE
T ss_pred EECCCCcCCCEeCCCcEEEEEEeCEEEEEE---CCEE--EEEeCCCCEE
Confidence 455555442222234579999999999876 3433 1278899875
No 245
>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}
Probab=33.65 E-value=48 Score=33.55 Aligned_cols=60 Identities=7% Similarity=0.161 Sum_probs=44.8
Q ss_pred HHHHHHHcccccccCCCeEEcc-CCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCee
Q 007326 403 INQIVIRLHEEFFLPGEVIMEK-GNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 403 l~~l~~~~~~~~~~~g~~I~~~-g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
+..+--.+....+.||-+.--- .-.+..+.+|++|++.+...+.+|+......+.+||+|
T Consensus 318 L~~lgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~g~~~f~~~l~~GDV~ 378 (466)
T 3kgl_A 318 LRFLRLSALRGSIRQNAMVLPQWNANANAVLYVTDGEAHVQVVNDNGDRVFDGQVSQGQLL 378 (466)
T ss_dssp HHHHTCEEEEEEEETTEEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred cccCceeeEEEEeecCcEeeeeECCCCCEEEEEEeceEEEEEEeCCCcEEEEeEecCCcEE
Confidence 3444445666778887765332 23467899999999999988888877677789999987
No 246
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=33.38 E-value=44 Score=27.09 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 007326 175 VRYLLWIRLYRVRKVSQFFHKME 197 (608)
Q Consensus 175 ~~~l~llrl~rl~r~~~~~~~~~ 197 (608)
+|++|++|++|+.|...-.+.+-
T Consensus 97 lRllRv~Rvlkl~r~~~~l~~l~ 119 (132)
T 1ors_C 97 FRLVRLLRFLRILLIISRGSKFL 119 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHH
Confidence 44444444444444444444333
No 247
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=33.30 E-value=37 Score=28.90 Aligned_cols=31 Identities=16% Similarity=0.012 Sum_probs=23.9
Q ss_pred ccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeec
Q 007326 427 VVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 463 (608)
Q Consensus 427 ~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 463 (608)
.++.++||++|.+.+.. +|+ ...+.+||.+=
T Consensus 109 ~gEE~~yVLeG~v~vtl---~g~---~~~L~~Gds~~ 139 (166)
T 2vpv_A 109 RTYITFHVIQGIVEVTV---CKN---KFLSVKGSTFQ 139 (166)
T ss_dssp SEEEEEEEEESEEEEEE---TTE---EEEEETTCEEE
T ss_pred CceEEEEEEEeEEEEEE---CCE---EEEEcCCCEEE
Confidence 34579999999999986 443 35789999763
No 248
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=32.66 E-value=40 Score=26.87 Aligned_cols=44 Identities=20% Similarity=0.187 Sum_probs=29.3
Q ss_pred ccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCee
Q 007326 413 EFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 413 ~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
..+.||...-.--.....+++|++|.+.+.. +|++ ..+.+||++
T Consensus 53 ~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i---~~~~---~~l~~Gd~i 96 (126)
T 1vj2_A 53 FTVEPGGLIDRHSHPWEHEIFVLKGKLTVLK---EQGE---ETVEEGFYI 96 (126)
T ss_dssp EEEEEEEEEEEECCSSCEEEEEEESEEEEEC---SSCE---EEEETTEEE
T ss_pred EEECCCCcCCceeCCCcEEEEEEEeEEEEEE---CCEE---EEECCCCEE
Confidence 4456665543333336689999999998875 3433 578899876
No 249
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=32.58 E-value=42 Score=26.60 Aligned_cols=45 Identities=13% Similarity=0.073 Sum_probs=28.7
Q ss_pred cccccCCCeEE--ccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCee
Q 007326 412 EEFFLPGEVIM--EKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 412 ~~~~~~g~~I~--~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
...+.||..+- +.-+....+|+|++|.+.+.. +|+ ...+.+||++
T Consensus 30 ~~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~i---~~~---~~~l~~Gd~i 76 (125)
T 3cew_A 30 INHLPAGAGVPFVHSHKQNEEIYGILSGKGFITI---DGE---KIELQAGDWL 76 (125)
T ss_dssp EEEECTTCBCSSEEEESSEEEEEEEEEEEEEEEE---TTE---EEEEETTEEE
T ss_pred EEEECCCCCCCCCccCCCceEEEEEEeCEEEEEE---CCE---EEEeCCCCEE
Confidence 34566776542 232333457779999999876 443 3678899876
No 250
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=32.56 E-value=44 Score=26.94 Aligned_cols=45 Identities=16% Similarity=0.168 Sum_probs=30.4
Q ss_pred cccccCCCeEEccCCc-cCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCee
Q 007326 412 EEFFLPGEVIMEKGNV-VDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 412 ~~~~~~g~~I~~~g~~-~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
...++||..+-.---. ...+++|++|.+.+.. +|+ ...+.+||.+
T Consensus 61 ~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i---~~~---~~~l~~Gd~i 106 (133)
T 1o4t_A 61 RMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHD---NGK---DVPIKAGDVC 106 (133)
T ss_dssp EEEECTTCEEEEEECCSEEEEEEEEESEEEEEE---TTE---EEEEETTEEE
T ss_pred EEEECCCCccCceECCCccEEEEEEeCEEEEEE---CCE---EEEeCCCcEE
Confidence 4457777755322222 3689999999999875 443 3678899876
No 251
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=32.45 E-value=63 Score=31.41 Aligned_cols=53 Identities=17% Similarity=0.093 Sum_probs=36.7
Q ss_pred cccccccCCCeEEcc-CCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeec
Q 007326 410 LHEEFFLPGEVIMEK-GNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 463 (608)
Q Consensus 410 ~~~~~~~~g~~I~~~-g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 463 (608)
+....+.||..+-.. .....++++|++|++.+...+.+|+ .....+++||++=
T Consensus 236 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~-~~~~~l~~GD~~~ 289 (361)
T 2vqa_A 236 GALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFASEGK-ASVSRLQQGDVGY 289 (361)
T ss_dssp EEEEEECTTCEEEEEECSSCCEEEEEEESCEEEEEECSTTC-EEEEEECTTCEEE
T ss_pred EEEEEECCCcccccccCCCCCEEEEEEeCEEEEEEEcCCCc-EEEEEECCCCEEE
Confidence 445567888766432 3334799999999999876555554 2346889999873
No 252
>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}
Probab=31.74 E-value=58 Score=32.95 Aligned_cols=61 Identities=5% Similarity=0.105 Sum_probs=44.2
Q ss_pred HHHHHHHcccccccCCCeEEcc-CCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeec
Q 007326 403 INQIVIRLHEEFFLPGEVIMEK-GNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 463 (608)
Q Consensus 403 l~~l~~~~~~~~~~~g~~I~~~-g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 463 (608)
+..+--.+....+.||-+.--- .-.++.+.+|++|.+.+...+.+|+...-..+.+||+|=
T Consensus 318 L~~lgiS~a~v~l~pGgm~~PHwHp~A~Ei~yV~~G~~~v~vV~~~g~~~f~~~l~~GDVfv 379 (465)
T 3qac_A 318 LRHLRLSAAKGVLYRNAMMAPHYNLNAHNIMYCVRGRGRIQIVNDQGQSVFDEELSRGQLVV 379 (465)
T ss_dssp HHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEE
T ss_pred ccccceeEEEEEecCCcEeeeEECCCCCEEEEEEeCCEEEEEEeCCCcEEEEEEecCCeEEE
Confidence 3344345566778887765332 234678999999999998888888766667899999873
No 253
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A
Probab=31.50 E-value=42 Score=34.03 Aligned_cols=63 Identities=10% Similarity=-0.000 Sum_probs=44.7
Q ss_pred HHHHHHHHHcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcc--------------------eeeEeeCCCC
Q 007326 401 EFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTE--------------------DYVSYLHPNS 460 (608)
Q Consensus 401 ~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~--------------------~~~~~l~~G~ 460 (608)
..++.+--.+....+.||..+...-..++.++||++|+..+-...+++.+ ..+..+++||
T Consensus 56 ~~l~~~gvs~~r~~i~pggl~~Ph~h~a~ei~yVl~G~g~vg~v~p~~~~tf~~~~~~~~~~~~~~~d~~q~~~~l~~GD 135 (459)
T 2e9q_A 56 DEFQCAGVNMIRHTIRPKGLLLPGFSNAPKLIFVAQGFGIRGIAIPGCAETYQTDLRRSQSAGSAFKDQHQKIRPFREGD 135 (459)
T ss_dssp HHHHHHTEEEEEEEECTTEEEEEEEESSCEEEEEEECEEEEEECCTTCCCCEEECCC-------CCCEEECCCEEEETTE
T ss_pred hhhccCceEEEEEEEcCCCEecceecCCceEEEEEeeEEEEEEEeCCCcchhccchhhccccccccccccceeEEecCCC
Confidence 34444444566678899988766556688999999999988776554332 1357899999
Q ss_pred eec
Q 007326 461 SFG 463 (608)
Q Consensus 461 ~fG 463 (608)
++-
T Consensus 136 v~~ 138 (459)
T 2e9q_A 136 LLV 138 (459)
T ss_dssp EEE
T ss_pred EEE
Confidence 874
No 254
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=31.36 E-value=64 Score=27.89 Aligned_cols=44 Identities=14% Similarity=-0.016 Sum_probs=30.1
Q ss_pred ccccCCCeEEc-c-CCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCee
Q 007326 413 EFFLPGEVIME-K-GNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 413 ~~~~~g~~I~~-~-g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
..+.||...-. . ......+++|++|.+.+.. +|+ ...+.+||.+
T Consensus 109 ~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~---~~~---~~~l~~GD~i 154 (192)
T 1y9q_A 109 ITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFF---DEQ---WHELQQGEHI 154 (192)
T ss_dssp EEECTTCEEEECCCSTTCEEEEEEEESCEEEEE---TTE---EEEECTTCEE
T ss_pred EEECCCCCccCCCCCCCCEEEEEEEEeEEEEEE---CCE---EEEeCCCCEE
Confidence 45667766542 1 2234689999999999876 443 3579999976
No 255
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=31.28 E-value=4 Score=40.11 Aligned_cols=11 Identities=18% Similarity=0.516 Sum_probs=6.4
Q ss_pred HHHHHHHHHhh
Q 007326 222 IAACIFYYLAT 232 (608)
Q Consensus 222 ~~ac~~~~~~~ 232 (608)
+..++|+.+..
T Consensus 162 ~~~s~y~~~~t 172 (355)
T 3beh_A 162 IPQAMWWAVVT 172 (355)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 35667766544
No 256
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=30.79 E-value=1.4e+02 Score=27.04 Aligned_cols=65 Identities=12% Similarity=0.064 Sum_probs=40.9
Q ss_pred cccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecchhhhcCCCcccEEEEeeceeeEEec
Q 007326 412 EEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRID 489 (608)
Q Consensus 412 ~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~ 489 (608)
...++||...-..- .+.+++|++|++.+.. +|++ ..+++||++=-- .+.++ ..+..++++++.+.
T Consensus 54 ~~~l~Pg~~~~~~~--~ee~~~Vl~G~~~~~~---~~~~---~~l~~Gd~~~~p---~~~~H--~~~n~~~~~~l~v~ 118 (246)
T 1sfn_A 54 TAEMPAGAQATESV--YQRFAFVLSGEVDVAV---GGET---RTLREYDYVYLP---AGEKH--MLTAKTDARVSVFE 118 (246)
T ss_dssp EEEECTTCEEECCS--SEEEEEEEEEEEEEEC---SSCE---EEECTTEEEEEC---TTCCC--EEEEEEEEEEEEEE
T ss_pred EEEECCCCcCCCCc--eeEEEEEEECEEEEEE---CCEE---EEECCCCEEEEC---CCCCE--EEEeCCCEEEEEEE
Confidence 34567776654432 6789999999999875 4543 679999976322 23444 34443667666553
No 257
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=30.57 E-value=68 Score=31.68 Aligned_cols=73 Identities=12% Similarity=0.035 Sum_probs=45.6
Q ss_pred ccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecchhhhcCCCcccEEEE---eeceeeEE
Q 007326 411 HEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQV---CELCRLLR 487 (608)
Q Consensus 411 ~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a---~~~~~l~~ 487 (608)
....+.||+..-..-.....+|+|++|+..+.. +|+ ...+++||+|=.-+ +.. ..... .+++.++.
T Consensus 297 ~~~~l~PG~~~~~HrH~~~~v~~VleG~G~~~V---~ge---~~~~~~GD~~~iP~---g~~--H~~~N~g~~e~~~ll~ 365 (394)
T 3bu7_A 297 SMQMLRPGEHTKAHRHTGNVIYNVAKGQGYSIV---GGK---RFDWSEHDIFCVPA---WTW--HEHCNTQERDDACLFS 365 (394)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEECCEEEEE---TTE---EEEECTTCEEEECT---TCC--EEEEECCSSCCEEEEE
T ss_pred EEEEECCCCcCCCcccCCcEEEEEEeCeEEEEE---CCE---EEEEeCCCEEEECC---CCe--EEeEeCCCCCCeEEEE
Confidence 455677877765555556789999999986554 453 36789999874332 222 23333 24566777
Q ss_pred echhhHH
Q 007326 488 IDKQSFT 494 (608)
Q Consensus 488 l~~~~~~ 494 (608)
+....+.
T Consensus 366 i~D~Pl~ 372 (394)
T 3bu7_A 366 FNDFPVM 372 (394)
T ss_dssp EESHHHH
T ss_pred eeCHHHH
Confidence 7654444
No 258
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=30.17 E-value=56 Score=30.54 Aligned_cols=48 Identities=21% Similarity=0.135 Sum_probs=36.5
Q ss_pred HcccccccCCCeEEc-cCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCee
Q 007326 409 RLHEEFFLPGEVIME-KGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 409 ~~~~~~~~~g~~I~~-~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
.+....++||..|-. +-....+.++|++|+..+.. +|+. ..+++||++
T Consensus 192 ~~~~~~l~pG~~i~~~~~h~~e~~~~il~G~~~~~~---~~~~---~~v~~GD~~ 240 (278)
T 1sq4_A 192 HVNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRL---NQDW---VEVEAGDFM 240 (278)
T ss_dssp EEEEEEECSSSEESCCCCCSEEEEEEEEECEEEEEE---TTEE---EEEETTCEE
T ss_pred EEEEEEECCCCCcCCCCCCCccEEEEEEeCEEEEEE---CCEE---EEeCCCCEE
Confidence 566778999999874 44445588999999998765 4543 688999976
No 259
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=29.66 E-value=97 Score=25.38 Aligned_cols=51 Identities=14% Similarity=-0.068 Sum_probs=30.3
Q ss_pred cccccCCCeEEc-cCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCee
Q 007326 412 EEFFLPGEVIME-KGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 412 ~~~~~~g~~I~~-~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
...+.||..+-. .....+.+++|++|.+.+...+..+.......+.+||++
T Consensus 47 ~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~~~~~~~~~~l~~Gd~i 98 (148)
T 2oa2_A 47 LMSIQVGEDIGLEIHPHLDQFLRVEEGRGLVQMGHRQDNLHFQEEVFDDYAI 98 (148)
T ss_dssp EEEECTTCBCCCBCCTTCEEEEEEEESEEEEEEESBTTBCCEEEEEETTCEE
T ss_pred EEEECCCCccCceECCCCcEEEEEEeCEEEEEECCccccceeeEEECCCCEE
Confidence 345667665422 222345899999999998763221111122578899865
No 260
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=29.57 E-value=75 Score=28.29 Aligned_cols=43 Identities=21% Similarity=0.160 Sum_probs=27.4
Q ss_pred ccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCee
Q 007326 415 FLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 415 ~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
+.||...=.-..+.+++|+|++|.++... .+|. ...+++|+.+
T Consensus 139 l~PG~~yP~HsHp~EEiy~VLsG~~e~~v--~~g~---~~~l~pGd~v 181 (217)
T 4b29_A 139 WGPGLDYGWHEHLPEELYSVVSGRALFHL--RNAP---DLMLEPGQTR 181 (217)
T ss_dssp ECSSCEEEEEECSSEEEEEEEEECEEEEE--TTSC---CEEECTTCEE
T ss_pred ECCCCcCCCCCCCCceEEEEEeCCEEEEE--CCCC---EEecCCCCEE
Confidence 34443332222356789999999998876 2233 3678899865
No 261
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=29.46 E-value=43 Score=33.71 Aligned_cols=52 Identities=15% Similarity=0.071 Sum_probs=39.1
Q ss_pred HcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCee
Q 007326 409 RLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 409 ~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
.+....+.||..+-..-..++.+++|++|++.+...+.++ .....+++||++
T Consensus 62 s~~~~~l~PGg~~~pHh~~a~Ei~yVl~G~g~v~~v~~~~--~~~~~l~~GDv~ 113 (434)
T 2ea7_A 62 RVVEFKSKPNTLLLPHHADADFLLVVLNGTAVLTLVNPDS--RDSYILEQGHAQ 113 (434)
T ss_dssp EEEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSC--EEEEEEETTEEE
T ss_pred EEEEEEecCCcCccCccCCCceEEEEEecEEEEEEEeCCC--CEEEEeCCCCEE
Confidence 4556778898887766556779999999999987755433 245789999976
No 262
>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*
Probab=28.85 E-value=39 Score=33.49 Aligned_cols=51 Identities=16% Similarity=0.150 Sum_probs=40.3
Q ss_pred HcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCe
Q 007326 409 RLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSS 461 (608)
Q Consensus 409 ~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~ 461 (608)
.+....+.||......-..++++++|++|+..+...+.++++ ...+++||+
T Consensus 53 s~~~~~l~pgg~~~ph~~~a~ei~yVl~G~~~v~~v~~~~~~--~~~l~~GDv 103 (397)
T 2phl_A 53 RLVEFRSKPETLLLPQQADAELLLVVRSGSAILVLVKPDDRR--EYFFLTSDN 103 (397)
T ss_dssp EEEEEEECSSEEEEEEEESEEEEEEEEESEEEEEEEETTTEE--EEEEEESSC
T ss_pred EEEEEEECCCcCccCEecCCCeEEEEEeeeEEEEEEeCCCcE--EEEECCCCc
Confidence 355667888888766666778999999999999887766553 578999998
No 263
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=28.41 E-value=45 Score=33.33 Aligned_cols=52 Identities=19% Similarity=0.233 Sum_probs=38.3
Q ss_pred HcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCee
Q 007326 409 RLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 409 ~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
.+....+.||..+.......+++++|++|++.+...+.++. ....+++||++
T Consensus 50 s~~~~~l~PGg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~--~~~~l~~GDv~ 101 (416)
T 1uij_A 50 RIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDR--DSYNLHPGDAQ 101 (416)
T ss_dssp EEEEEEECTTEEEEEEEESEEEEEEEEESCEEEEEECSSCE--EEEEECTTEEE
T ss_pred EEEEEEeccCcCcccccCCCceEEEEEeeEEEEEEEECCCC--eEEEecCCCEE
Confidence 34566788888766665567799999999999876555322 35689999977
No 264
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=28.09 E-value=53 Score=33.46 Aligned_cols=63 Identities=8% Similarity=-0.123 Sum_probs=45.6
Q ss_pred HHHHHHHHHcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcc---------------------eeeEeeCCC
Q 007326 401 EFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTE---------------------DYVSYLHPN 459 (608)
Q Consensus 401 ~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~---------------------~~~~~l~~G 459 (608)
..++.+--.+....+.||..+...-.+++.++||++|+..+-..++++.+ ..+..+++|
T Consensus 41 ~~l~~~gvs~~r~~l~Pggl~~Ph~~~a~ei~yV~~G~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~d~~qk~~~l~~G 120 (476)
T 1fxz_A 41 KPFQCAGVALSRCTLNRNALRRPSYTNGPQEIYIQQGKGIFGMIYPGCPSTFEEPQQPQQRGQSSRPQDRHQKIYNFREG 120 (476)
T ss_dssp HHHHHHTCEEEEEEECTTEEEEEEEESSCEEEEEEECCEEEEEECTTCCCC------------------CCCCEEEECTT
T ss_pred hhhccCceEEEEEEEcCCCEecceecCCceEEEEEecEEEEEEEcCCCcchhhccccccccccccccccccceEEEEeCC
Confidence 34444444666778999988866666688999999999888776654432 136789999
Q ss_pred Ceec
Q 007326 460 SSFG 463 (608)
Q Consensus 460 ~~fG 463 (608)
|++-
T Consensus 121 Dvi~ 124 (476)
T 1fxz_A 121 DLIA 124 (476)
T ss_dssp EEEE
T ss_pred CEEE
Confidence 9874
No 265
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=27.92 E-value=1.1e+02 Score=25.04 Aligned_cols=46 Identities=20% Similarity=0.159 Sum_probs=30.1
Q ss_pred cccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCee
Q 007326 412 EEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 412 ~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
...+.||..+-..--....+++|++|.+.+.. +|+. ...+.+||++
T Consensus 52 ~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~---~~~~--~~~l~~Gd~i 97 (147)
T 2f4p_A 52 DVVFEPGARTHWHSHPGGQILIVTRGKGFYQE---RGKP--ARILKKGDVV 97 (147)
T ss_dssp EEEECTTCEECSEECTTCEEEEEEEEEEEEEE---TTSC--CEEEETTCEE
T ss_pred EEEECCCCccCceECCCceEEEEEeCEEEEEE---CCEE--EEEECCCCEE
Confidence 44566776553322234689999999999875 3332 2468899876
No 266
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21
Probab=27.78 E-value=66 Score=26.52 Aligned_cols=71 Identities=13% Similarity=-0.025 Sum_probs=43.1
Q ss_pred cccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecchhhhcCCCcccEEEEeeceeeEEe
Q 007326 410 LHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRI 488 (608)
Q Consensus 410 ~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l 488 (608)
+....++||..+-.-..+....++|++|.... ..|....-..+++|+++=.-. +.++.. +.+.++|.++.+
T Consensus 46 ~~~~~~~pG~~~p~H~H~~~ee~~VL~G~~~~----~~g~~~~~~~~~~Gd~~~~p~---g~~H~p-~~~~e~~~~l~~ 116 (145)
T 2o1q_A 46 TAIFDCPAGSSFAAHVHVGPGEYFLTKGKMDV----RGGKAAGGDTAIAPGYGYESA---NARHDK-TEFPVASEFYMS 116 (145)
T ss_dssp EEEEEECTTEEECCEEESSCEEEEEEEEEEEE----TTCGGGTSEEEESSEEEEECT---TCEESC-CEEEEEEEEEEE
T ss_pred EEEEEECCCCCCCccCCCCCEEEEEEEeEEEE----cCCCEecceEeCCCEEEEECc---CCccCC-eECCCCeEEEEE
Confidence 44567888888876666667789999999873 234322124677888764332 222221 444566766554
No 267
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=27.45 E-value=72 Score=31.32 Aligned_cols=53 Identities=9% Similarity=-0.060 Sum_probs=35.7
Q ss_pred cccccccCCCeEEccCCcc-CeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeec
Q 007326 410 LHEEFFLPGEVIMEKGNVV-DQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 463 (608)
Q Consensus 410 ~~~~~~~~g~~I~~~g~~~-~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 463 (608)
+....+.||...-..-.+. +++++|++|++.+...+.+|+. ....+++||++=
T Consensus 259 ~~~~~l~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~~~g~~-~~~~l~~GD~~~ 312 (385)
T 1j58_A 259 SALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHA-RTFNYQAGDVGY 312 (385)
T ss_dssp EEEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEEEETTEE-EEEEEESSCEEE
T ss_pred EEEEEECCCcccCceeCCCCCEEEEEEeCeEEEEEEcCCCcE-EEEEEcCCCEEE
Confidence 3445677887764333334 7899999999998765455532 346789999763
No 268
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=27.35 E-value=74 Score=28.89 Aligned_cols=45 Identities=9% Similarity=-0.007 Sum_probs=31.3
Q ss_pred ccccC-CCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeec
Q 007326 413 EFFLP-GEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 463 (608)
Q Consensus 413 ~~~~~-g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 463 (608)
..++| |..+-..--+...+++|++|.+.+.. +|++ ..+.+||.+-
T Consensus 150 ~~~~p~g~~~~~H~H~~~e~~~Vl~G~~~~~i---~~~~---~~l~~Gd~i~ 195 (243)
T 3h7j_A 150 AKIPGNGGEMPFHKHRNEQIGICIGGGYDMTV---EGCT---VEMKFGTAYF 195 (243)
T ss_dssp EEECTTTEEEEEECCSSEEEEEECSSCEEEEE---TTEE---EEECTTCEEE
T ss_pred EEECCCCCcCCCEeCCCcEEEEEEECEEEEEE---CCEE---EEECCCCEEE
Confidence 34777 76654433445689999999999876 4432 5689999763
No 269
>2q1z_B Anti-sigma factor CHRR, transcriptional activator; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_B
Probab=26.81 E-value=85 Score=27.42 Aligned_cols=65 Identities=14% Similarity=0.059 Sum_probs=45.1
Q ss_pred HcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecchhhhcCCCcccEEEE--eeceeeE
Q 007326 409 RLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQV--CELCRLL 486 (608)
Q Consensus 409 ~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a--~~~~~l~ 486 (608)
.+....+.||..+-.....+..+.+|++|... ++. ..+.+||++=. ......+..+ .+.|.++
T Consensus 126 ~v~l~~~~pG~~~p~H~H~g~E~~~VL~G~f~----de~------~~~~~Gd~~~~-----p~g~~H~p~a~~~~gc~~l 190 (195)
T 2q1z_B 126 IARLLWIPGGQAVPDHGHRGLELTLVLQGAFR----DET------DRFGAGDIEIA-----DQELEHTPVAERGLDCICL 190 (195)
T ss_dssp EEEEEEECTTCBCCCCCCSSCEEEEEEESEEE----CSS------SEEETTCEEEE-----CSSCCCCCEECSSSCEEEE
T ss_pred EEEEEEECCCCCCCCcCCCCeEEEEEEEEEEE----CCc------EEECCCeEEEe-----CcCCccCCEeCCCCCEEEE
Confidence 44567789999998888888899999999965 222 35788987532 2223344555 6778877
Q ss_pred Ee
Q 007326 487 RI 488 (608)
Q Consensus 487 ~l 488 (608)
.+
T Consensus 191 ~~ 192 (195)
T 2q1z_B 191 AA 192 (195)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 270
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=25.15 E-value=83 Score=29.11 Aligned_cols=48 Identities=13% Similarity=0.072 Sum_probs=36.8
Q ss_pred HcccccccCCCeEE-ccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCee
Q 007326 409 RLHEEFFLPGEVIM-EKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 409 ~~~~~~~~~g~~I~-~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
.++...++||..+= .+-....+-++|++|+..+.. +|+ ...+++||++
T Consensus 187 ~~~~~t~~PG~~~p~~e~H~~eh~~~vL~G~g~y~l---~~~---~~~V~~GD~i 235 (266)
T 4e2q_A 187 NIHTMDFQPGEFLNVKEVHYNQHGLLLLEGQGIYRL---GDN---WYPVQAGDVI 235 (266)
T ss_dssp EEEEEEECTTCBCSSCCCCSCCEEEEEEECEEEEEE---TTE---EEEEETTCEE
T ss_pred EEEEEEECCCcCcCCceEcccceEEEEEeceEEEEE---CCE---EEEecCCCEE
Confidence 45677899999985 466667799999999988765 444 3678899976
No 271
>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*
Probab=25.00 E-value=67 Score=31.80 Aligned_cols=54 Identities=13% Similarity=0.065 Sum_probs=39.7
Q ss_pred HcccccccCCCeEEccC-CccCeEEEEEeeEEEEEEecc------CCcceeeEeeCCCCee
Q 007326 409 RLHEEFFLPGEVIMEKG-NVVDQLYFVCLGKLEEVGIEE------NGTEDYVSYLHPNSSF 462 (608)
Q Consensus 409 ~~~~~~~~~g~~I~~~g-~~~~~ly~I~~G~v~~~~~~~------~g~~~~~~~l~~G~~f 462 (608)
.+....+.||.+...-= ..+..+++|++|+..+...+. +|.+.....+.+||+|
T Consensus 240 s~a~v~l~pG~~~~PH~h~~A~Ei~yVl~G~g~v~vv~~~~~~~~~g~~~~~~~l~~GDV~ 300 (397)
T 2phl_A 240 LISSIEMEEGALFVPHYYSKAIVILVVNEGEAHVELVGPKGNKETLEYESYRAELSKDDVF 300 (397)
T ss_dssp EEEEEEECTTEEEEEEEESSCEEEEEEEESEEEEEEEEECC--CCSCEEEEEEEEETTCEE
T ss_pred eEEEEEEcCCcEeeeeEcCCCCEEEEEEeeeEEEEEEeccccccCCCceEEEEEecCCCEE
Confidence 45556677776654322 346789999999998888766 5666677889999987
No 272
>2qjv_A Uncharacterized IOLB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.90A {Salmonella typhimurium LT2}
Probab=24.96 E-value=1.8e+02 Score=26.82 Aligned_cols=77 Identities=12% Similarity=-0.013 Sum_probs=53.2
Q ss_pred HcccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEe-eCCCCeecch---hhhcCCCcccEEEEeecee
Q 007326 409 RLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSY-LHPNSSFGEV---SILCNIPQPYTVQVCELCR 484 (608)
Q Consensus 409 ~~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~-l~~G~~fGe~---~~~~~~~~~~~~~a~~~~~ 484 (608)
.+....+++|+..-.+-+..+...+++.|.+.+.. +|.+ ... -...+.|... ++.-+.-..+++.|.++++
T Consensus 30 ~f~~~~L~~Ge~~~~~~~~~E~~iv~l~G~~~V~~---~g~~--~~~~g~R~svF~~~~p~~lYvp~g~~v~i~a~~~~~ 104 (270)
T 2qjv_A 30 GFDVWQLXAGESITLPSDERERCLVLVAGLASVXA---ADSF--FYRIGQRMSPFERIPAYSVYLPHHTEAXVTAETDLE 104 (270)
T ss_dssp EEEEEEECTTCEEEECCSSEEEEEEEEESCEEEEE---TTEE--EEEECCCSSGGGCSCCCEEEECSSCCEEEEESSSEE
T ss_pred EEEEEEecCCCEEEecCCCcEEEEEEecceEEEEE---CCEE--EeccccccccccCCCCcEEEECCCCEEEEEecCCce
Confidence 35567788999988877777778888999998876 5532 222 2456677654 3333444478899999988
Q ss_pred eEEech
Q 007326 485 LLRIDK 490 (608)
Q Consensus 485 l~~l~~ 490 (608)
++....
T Consensus 105 ~~v~sA 110 (270)
T 2qjv_A 105 LAVCSA 110 (270)
T ss_dssp EEEEEE
T ss_pred EEEEee
Confidence 877654
No 273
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=24.79 E-value=80 Score=29.29 Aligned_cols=47 Identities=13% Similarity=0.041 Sum_probs=32.9
Q ss_pred cccccccCCCeEEc-cCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCee
Q 007326 410 LHEEFFLPGEVIME-KGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 410 ~~~~~~~~g~~I~~-~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
+....+.||..+-. .--...++++|++|++.+.. +|+ ...+++||++
T Consensus 184 ~~~~~l~pg~~~~~~H~H~~~E~~yVl~G~~~~~i---~~~---~~~l~~GD~i 231 (274)
T 1sef_A 184 MHILSFEPGASHAYIETHVQEHGAYLISGQGMYNL---DNE---WYPVEKGDYI 231 (274)
T ss_dssp EEEEEECTTCBCSSCBCCSCCEEEEEEECEEEEEE---TTE---EEEEETTCEE
T ss_pred EEEEEECCCCccCcceeccCeEEEEEEeCEEEEEE---CCE---EEEECCCCEE
Confidence 34456778876633 22345689999999999876 443 3678999976
No 274
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=24.76 E-value=88 Score=27.98 Aligned_cols=15 Identities=27% Similarity=0.505 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHH
Q 007326 181 IRLYRVRKVSQFFHK 195 (608)
Q Consensus 181 lrl~rl~r~~~~~~~ 195 (608)
+|++|+.|+.|..+.
T Consensus 101 lr~~RilR~lrl~~~ 115 (229)
T 4dxw_A 101 LRLLRIFRVLRLISV 115 (229)
T ss_dssp CTTHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 355555555544443
No 275
>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A
Probab=24.67 E-value=59 Score=32.42 Aligned_cols=50 Identities=12% Similarity=0.100 Sum_probs=38.9
Q ss_pred ccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCee
Q 007326 411 HEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 411 ~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
....+.||..+...--.++.+++|++|+..+-..+.++. ....+++||++
T Consensus 47 ~~~~l~p~gl~~Phh~~A~ei~yV~~G~g~~g~V~~~~~--~~~~l~~GDv~ 96 (418)
T 3s7i_A 47 VQIEAKPNTLVLPKHADADNILVIQQGQATVTVANGNNR--KSFNLDEGHAL 96 (418)
T ss_dssp EEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSCE--EEEEEETTEEE
T ss_pred EEEEecCCceeeeeeCCCCeEEEEEEeeEEEEEEecCCE--EEEEecCCCEE
Confidence 345677888887776567789999999998887766443 46889999988
No 276
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=24.61 E-value=69 Score=26.80 Aligned_cols=51 Identities=14% Similarity=0.085 Sum_probs=30.4
Q ss_pred cccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCC---cceeeEeeCCCCee
Q 007326 412 EEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG---TEDYVSYLHPNSSF 462 (608)
Q Consensus 412 ~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g---~~~~~~~l~~G~~f 462 (608)
...+.||...-..-.....+++|++|.+.+...+.++ .+.....+.+||++
T Consensus 45 ~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~~~~~~~~~~~~l~~Gd~i 98 (163)
T 1lr5_A 45 LQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTF 98 (163)
T ss_dssp EEEECTTCBCCEEEESSCEEEEEEECCEEEEECCSSSSSCCSCEEEEECTTEEE
T ss_pred EEEECCCCcCCCeECCCCeEEEEEeCEEEEEECCccccccCccEEEEeCCCCEE
Confidence 3456676654222223457999999999987632111 11134678999975
No 277
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=24.40 E-value=78 Score=28.73 Aligned_cols=47 Identities=13% Similarity=0.051 Sum_probs=33.3
Q ss_pred cccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCee
Q 007326 410 LHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 410 ~~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
+....+.||..+-.---+...+++|++|.+.+.. +|+ ...+.+||.+
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~~---~~~---~~~l~~Gd~i 82 (243)
T 3h7j_A 36 VLMSYVPPHTNVEPHQHKEVQIGMVVSGELMMTV---GDV---TRKMTALESA 82 (243)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEESEEEEEE---TTE---EEEEETTTCE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEEeEEEEEE---CCE---EEEECCCCEE
Confidence 3444578887765544456789999999999876 443 3678999843
No 278
>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*
Probab=23.64 E-value=1e+02 Score=26.73 Aligned_cols=33 Identities=15% Similarity=0.161 Sum_probs=25.6
Q ss_pred CeEEEEEeeEEEEEEeccCCcceeeEeeCCCCee
Q 007326 429 DQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 429 ~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
..+++|++|++.+...+..|+ .....+++||.+
T Consensus 97 ~E~~~Vl~G~~~~~i~~~~g~-~~~~~l~~GD~v 129 (190)
T 1x82_A 97 AEVYVALKGKGGMLLQTPEGD-AKWISMEPGTVV 129 (190)
T ss_dssp CEEEEEEESCEEEEEECTTCC-EEEEEECTTCEE
T ss_pred CEEEEEEcCEEEEEEcCcCCc-EEEEEECCCcEE
Confidence 689999999999887544453 345689999976
No 279
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=23.52 E-value=28 Score=22.10 Aligned_cols=19 Identities=21% Similarity=0.497 Sum_probs=15.4
Q ss_pred HHHHHhhCCHHHHHHHHHH
Q 007326 365 EASVLQDIPISIRAKISQT 383 (608)
Q Consensus 365 ~~~~l~~lp~~l~~~i~~~ 383 (608)
+.++++.||.++++|+...
T Consensus 17 D~eVF~~LP~dIQ~Ells~ 35 (48)
T 2kwv_A 17 DQEVFKQLPADIQEEILSG 35 (48)
T ss_dssp CGGGTTTSCHHHHHHHTTC
T ss_pred CHHHHHHCcHHHHHHHHhc
Confidence 5778999999999887544
No 280
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=23.47 E-value=75 Score=29.22 Aligned_cols=46 Identities=9% Similarity=0.026 Sum_probs=30.3
Q ss_pred cccccCCCeEEccC--CccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeec
Q 007326 412 EEFFLPGEVIMEKG--NVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 463 (608)
Q Consensus 412 ~~~~~~g~~I~~~g--~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 463 (608)
...++||...-... ...+.+++|++|++.+.. +|+ ...+++||++-
T Consensus 63 ~~~l~pg~~~~~~~~~~~~ee~~~Vl~G~l~~~~---~~~---~~~L~~Gd~~~ 110 (261)
T 1rc6_A 63 LVTLHQNGGNQQGFGGEGIETFLYVISGNITAKA---EGK---TFALSEGGYLY 110 (261)
T ss_dssp EEEEEEEEEESSCSCCTTEEEEEEEEESEEEEEE---TTE---EEEEETTEEEE
T ss_pred EEEEcCCCccCCCCCCCCceEEEEEEEeEEEEEE---CCE---EEEECCCCEEE
Confidence 34566665543221 224579999999999876 444 36789999763
No 281
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*
Probab=22.40 E-value=2.6e+02 Score=26.84 Aligned_cols=70 Identities=6% Similarity=-0.099 Sum_probs=46.0
Q ss_pred CCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecchhhhcCCCcccEEEEeec-eeeEEech--hhHH
Q 007326 418 GEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCEL-CRLLRIDK--QSFT 494 (608)
Q Consensus 418 g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~-~~l~~l~~--~~~~ 494 (608)
|+.+-.-..+.+.+++|++|.+++.. +|.+ ...+++||.+= -....+.++.+.+. ..++.+.. +.+.
T Consensus 262 g~~~~~h~~~~~~~~~vleG~~~i~i---~g~~--~~~l~~Gd~~~-----iPag~~h~~~~~~~~~~~l~~~~g~~g~~ 331 (350)
T 1juh_A 262 TVTVPTWSFPGACAFQVQEGRVVVQI---GDYA--ATELGSGDVAF-----IPGGVEFKYYSEAYFSKVLFVSSGSDGLD 331 (350)
T ss_dssp TSCCCCBCCSSCEEEEEEESCEEEEE---TTSC--CEEECTTCEEE-----ECTTCCEEEEESSSSEEEEEEEESSSSHH
T ss_pred CCCCCcccCCCcEEEEEEeeEEEEEE---CCeE--EEEeCCCCEEE-----ECCCCCEEEEecCCeEEEEEEecCccchh
Confidence 55555555677899999999999886 4522 25899999762 22223445556544 67777666 6666
Q ss_pred HHH
Q 007326 495 NII 497 (608)
Q Consensus 495 ~l~ 497 (608)
..+
T Consensus 332 ~~~ 334 (350)
T 1juh_A 332 QNL 334 (350)
T ss_dssp HHH
T ss_pred hee
Confidence 654
No 282
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=21.37 E-value=88 Score=24.23 Aligned_cols=34 Identities=15% Similarity=0.144 Sum_probs=23.9
Q ss_pred CccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeec
Q 007326 426 NVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 463 (608)
Q Consensus 426 ~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 463 (608)
...+.+++|++|.+.+.. +|++ ....+++||.+-
T Consensus 51 ~~~~E~~~Vl~G~~~l~~---~~~~-~~~~l~~Gd~i~ 84 (112)
T 2opk_A 51 SPQDEWVMVVSGSAGIEC---EGDT-APRVMRPGDWLH 84 (112)
T ss_dssp CSSEEEEEEEESCEEEEE---TTCS-SCEEECTTEEEE
T ss_pred CCccEEEEEEeCeEEEEE---CCEE-EEEEECCCCEEE
Confidence 345689999999999876 3332 114689999763
No 283
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A
Probab=21.19 E-value=54 Score=26.60 Aligned_cols=31 Identities=16% Similarity=0.242 Sum_probs=21.0
Q ss_pred cCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCee
Q 007326 428 VDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 428 ~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
...+++|++|.+.+... .+|+ ...+.+||++
T Consensus 59 ~~e~~~vl~G~~~~~~~-~~~~---~~~l~~Gd~~ 89 (145)
T 3ht1_A 59 WEHEIYVLEGSMGLVLP-DQGR---TEEVGPGEAI 89 (145)
T ss_dssp SCEEEEEEEECEEEEEG-GGTE---EEEECTTCEE
T ss_pred CceEEEEEEeEEEEEEe-ECCE---EEEECCCCEE
Confidence 34566799999998720 1343 3678999976
No 284
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=21.09 E-value=57 Score=32.25 Aligned_cols=69 Identities=13% Similarity=-0.046 Sum_probs=42.3
Q ss_pred ccccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecchhhhcCCCcccEEEE-eeceeeEEec
Q 007326 411 HEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQV-CELCRLLRID 489 (608)
Q Consensus 411 ~~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a-~~~~~l~~l~ 489 (608)
....+.||+.+-..-.....+|||++|+-.... .+|++ ..+++||++=.- .-....... .++..+..++
T Consensus 126 ~~~~l~PG~~~~~HrH~~~ev~~IleG~G~~t~--v~G~~---~~~~~GD~i~~P-----~g~~H~~~N~~gde~l~~l~ 195 (394)
T 3bu7_A 126 GIQTMKAGERAGAHRHAASALRFIMEGSGAYTI--VDGHK---VELGANDFVLTP-----NGTWHEHGILESGTECIWQD 195 (394)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEECSCEEEE--ETTEE---EEECTTCEEEEC-----TTCCEEEEECTTCCCEEEEE
T ss_pred EEEEECCCCCcCCccCCcceEEEEEEeeEEEEE--ECCEE---EEEcCCCEEEEC-----cCCCEEEEcCCCCCCEEEEE
Confidence 455677777775554455689999999875533 25543 578999987322 222344555 5555555554
No 285
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=20.17 E-value=2e+02 Score=28.06 Aligned_cols=75 Identities=19% Similarity=0.203 Sum_probs=50.9
Q ss_pred cccccCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcceeeEeeCCCCeecchhhhcCCCcccEEEEeeceeeEEechh
Q 007326 412 EEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQ 491 (608)
Q Consensus 412 ~~~~~~g~~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~~ 491 (608)
...+.||+..-..-.....+|.|.+|+-.+.. +|+ ....++||.|---+. ...+..+.+++.++.++-.
T Consensus 283 ~~~L~pG~~t~~hRht~s~Vy~V~eG~G~~~I---~~~---~~~w~~gD~fvvP~w-----~~h~~~n~~~a~Lf~~~D~ 351 (368)
T 3nw4_A 283 FHRLRAGTETATRNEVGSTVFQVFEGAGAVVM---NGE---TTKLEKGDMFVVPSW-----VPWSLQAETQFDLFRFSDA 351 (368)
T ss_dssp EEEECTTCBCCCEEESSCEEEEEEESCEEEEE---TTE---EEEECTTCEEEECTT-----CCEEEEESSSEEEEEEESH
T ss_pred eEEECCCCccCCeeccccEEEEEEeCcEEEEE---CCE---EEEecCCCEEEECCC-----CcEEEEeCCCEEEEEEeCH
Confidence 34566666654444456689999999988765 443 357899999854432 2345567789999998877
Q ss_pred hHHHHH
Q 007326 492 SFTNII 497 (608)
Q Consensus 492 ~~~~l~ 497 (608)
-+.+-+
T Consensus 352 Pl~~~L 357 (368)
T 3nw4_A 352 PIMEAL 357 (368)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 665543
Done!