BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007327
(608 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MWE|B Chain B, Truncated Human Atp-Citrate Lyase With Tartrate Bound
Length = 335
Score = 347 bits (889), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 166/330 (50%), Positives = 221/330 (66%), Gaps = 1/330 (0%)
Query: 6 LFSKTTQALFYNYKQLPIQRMLDFDFLCGRETPSVAGIINP-GAEGFQKLFFGQEEIAIP 64
LFS+ T+A+ + + +Q MLDFD++C R+ PSVA ++ P + QK ++G +EI IP
Sbjct: 6 LFSRHTKAIVWGMQTRAVQGMLDFDYVCSRDEPSVAAMVYPFTGDHKQKFYWGHKEILIP 65
Query: 65 VHSTVEAACAAHPMADVFINFXXXXXXXXXXXXXLKQPTIRVVAIIAEGVPEADTKQLIA 124
V + A HP DV INF + IR +AIIAEG+PEA T++LI
Sbjct: 66 VFKNMADAMRKHPEVDVLINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPEALTRKLIK 125
Query: 125 YARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELY 184
A +IGPATVGGI+ G FKIG+T G +DNI+ KLYRPGSV +VS+SGGMSNEL
Sbjct: 126 KADQKGVTIIGPATVGGIKPGCFKIGNTGGMLDNILASKLYRPGSVAYVSRSGGMSNELN 185
Query: 185 NTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEAL 244
N I+R TDG+YEG+AIGGD +PGST DH+LR+ + P VKM+VVLGE+GG +EY + +
Sbjct: 186 NIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGTEEYKICRGI 245
Query: 245 KQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYE 304
K+G++ KP+V W GTCA +F SEVQFGHAGA + E+A AKNQAL++AG VP S++
Sbjct: 246 KEGRLTKPIVCWCIGTCATMFSSEVQFGHAGACANQASETAVAKNQALKEAGVFVPRSFD 305
Query: 305 AFESAIKETFEKLVEEGKIPPVKEVTPPQI 334
I+ +E LV G I P +EV PP +
Sbjct: 306 ELGEIIQSVYEDLVANGVIVPAQEVPPPTV 335
>pdb|3PFF|A Chain A, Truncated Human Atp-Citrate Lyase With Adp And Tartrate
Bound
Length = 829
Score = 340 bits (873), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 164/325 (50%), Positives = 218/325 (67%), Gaps = 1/325 (0%)
Query: 6 LFSKTTQALFYNYKQLPIQRMLDFDFLCGRETPSVAGIINP-GAEGFQKLFFGQEEIAIP 64
LFS+ T+A+ + + +Q MLDFD++C R+ PSVA ++ P + QK ++G +EI IP
Sbjct: 492 LFSRHTKAIVWGMQTRAVQGMLDFDYVCSRDEPSVAAMVYPFTGDHKQKFYWGHKEILIP 551
Query: 65 VHSTVEAACAAHPMADVFINFXXXXXXXXXXXXXLKQPTIRVVAIIAEGVPEADTKQLIA 124
V + A HP DV INF + IR +AIIAEG+PEA T++LI
Sbjct: 552 VFKNMADAMRKHPEVDVLINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPEALTRKLIK 611
Query: 125 YARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELY 184
A +IGPATVGGI+ G FKIG+T G +DNI+ KLYRPGSV +VS+SGGMSNEL
Sbjct: 612 KADQKGVTIIGPATVGGIKPGCFKIGNTGGMLDNILASKLYRPGSVAYVSRSGGMSNELN 671
Query: 185 NTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEAL 244
N I+R TDG+YEG+AIGGD +PGST DH+LR+ + P VKM+VVLGE+GG +EY + +
Sbjct: 672 NIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGTEEYKICRGI 731
Query: 245 KQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYE 304
K+G++ KP+V W GTCA +F SEVQFGHAGA + E+A AKNQAL++AG VP S++
Sbjct: 732 KEGRLTKPIVCWCIGTCATMFSSEVQFGHAGACANQASETAVAKNQALKEAGVFVPRSFD 791
Query: 305 AFESAIKETFEKLVEEGKIPPVKEV 329
I+ +E LV G I P +EV
Sbjct: 792 ELGEIIQSVYEDLVANGVIVPAQEV 816
>pdb|3MWD|B Chain B, Truncated Human Atp-Citrate Lyase With Citrate Bound
Length = 334
Score = 333 bits (853), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 164/328 (50%), Positives = 214/328 (65%), Gaps = 1/328 (0%)
Query: 6 LFSKTTQALFYNYKQLPIQRMLDFDFLCGRETPSVAGIINP-GAEGFQKLFFGQEEIAIP 64
LFS+ T+A+ + + +Q LDFD++C R+ PSVA + P + QK ++G +EI IP
Sbjct: 6 LFSRHTKAIVWGXQTRAVQGXLDFDYVCSRDEPSVAAXVYPFTGDHKQKFYWGHKEILIP 65
Query: 65 VHSTVEAACAAHPMADVFINFXXXXXXXXXXXXXLKQPTIRVVAIIAEGVPEADTKQLIA 124
V A HP DV INF IR +AIIAEG+PEA T++LI
Sbjct: 66 VFKNXADAXRKHPEVDVLINFASLRSAYDSTXETXNYAQIRTIAIIAEGIPEALTRKLIK 125
Query: 125 YARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELY 184
A +IGPATVGGI+ G FKIG+T G +DNI+ KLYRPGSV +VS+SGG SNEL
Sbjct: 126 KADQKGVTIIGPATVGGIKPGCFKIGNTGGXLDNILASKLYRPGSVAYVSRSGGXSNELN 185
Query: 185 NTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEAL 244
N I+R TDG+YEG+AIGGD +PGST DH+LR+ + P VK +VVLGE+GG +EY + +
Sbjct: 186 NIISRTTDGVYEGVAIGGDRYPGSTFXDHVLRYQDTPGVKXIVVLGEIGGTEEYKICRGI 245
Query: 245 KQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYE 304
K+G++ KP+V W GTCA F SEVQFGHAGA + E+A AKNQAL++AG VP S++
Sbjct: 246 KEGRLTKPIVCWCIGTCATXFSSEVQFGHAGACANQASETAVAKNQALKEAGVFVPRSFD 305
Query: 305 AFESAIKETFEKLVEEGKIPPVKEVTPP 332
I+ +E LV G I P +EV PP
Sbjct: 306 ELGEIIQSVYEDLVANGVIVPAQEVPPP 333
>pdb|2YV2|A Chain A, Crystal Structure Of Succinyl-Coa Synthetase Alpha Chain
From Aeropyrum Pernix K1
Length = 297
Score = 116 bits (290), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 81/252 (32%), Positives = 125/252 (49%), Gaps = 13/252 (5%)
Query: 57 GQEEIAIPVHSTVEAACAAHPMADVFINFXXXXXXXXXXXXXLKQPTIRVVAIIAEGVPE 116
G E +PV+ +V+ A A HP + I F + IR+V +I EG+P
Sbjct: 50 GSEVHGVPVYDSVKEALAEHPEINTSIVFVPAPFAPDAVYEAVDA-GIRLVVVITEGIPV 108
Query: 117 ADTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKS 176
DT + + YAR +IGP G I G K+G I+ +++ G V VS+S
Sbjct: 109 HDTMRFVNYARQKGATIIGPNCPGAITPGQAKVG--------IMPGHIFKEGGVAVVSRS 160
Query: 177 GGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRD 236
G ++ E+ + R G I IGGD G + ++ + F PQ + +V++GE+GG
Sbjct: 161 GTLTYEISYMLTRQGIGQSTVIGIGGDPIVGLSFTEALKLFQEDPQTEALVLIGEIGGDM 220
Query: 237 EYSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAG 296
E E +K+G+ KPV+A+++G R E + GHAGA + + K +ALR+AG
Sbjct: 221 EERAAEMIKKGEFTKPVIAYIAG---RTAPPEKRMGHAGAIIMMGTGTYEGKVKALREAG 277
Query: 297 A-VVPTSYEAFE 307
V T +E E
Sbjct: 278 VEVAETPFEVPE 289
>pdb|2NU8|A Chain A, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU8|D Chain D, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Length = 288
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 100/215 (46%), Gaps = 18/215 (8%)
Query: 104 IRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCK 163
I+++ I EG+P D + +IGP T G I G KIG G I
Sbjct: 89 IKLIITITEGIPTLDMLTVKVKLDEAGVRMIGPNTPGVITPGECKIGIQPGHI------- 141
Query: 164 LYRPGSVGFVSKSGGMSNELYNTIARVTD---GIYEGIAIGGDVFPGSTLSDHILRFNNI 220
++PG VG VS+SG ++ Y + + TD G + IGGD PGS D + F
Sbjct: 142 -HKPGKVGIVSRSGTLT---YEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKD 197
Query: 221 PQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGG 280
PQ + +V++GE+GG E +K+ V KPVV +++G A K + GHAGA G
Sbjct: 198 PQTEAIVMIGEIGGSAEEEAAAYIKE-HVTKPVVGYIAGVTAPKGK---RMGHAGAIIAG 253
Query: 281 EMESAQAKNQALRDAGAVVPTSYEAFESAIKETFE 315
+A K AL AG S A+K +
Sbjct: 254 GKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK 288
>pdb|2NU7|A Chain A, C123as Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU7|D Chain D, C123as Mutant Of E. Coli Succinyl-Coa Synthetase
Length = 288
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 100/215 (46%), Gaps = 18/215 (8%)
Query: 104 IRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCK 163
I+++ I EG+P D + +IGP + G I G KIG G I
Sbjct: 89 IKLIITITEGIPTLDMLTVKVKLDEAGVRMIGPNSPGVITPGECKIGIQPGHI------- 141
Query: 164 LYRPGSVGFVSKSGGMSNELYNTIARVTD---GIYEGIAIGGDVFPGSTLSDHILRFNNI 220
++PG VG VS+SG ++ Y + + TD G + IGGD PGS D + F
Sbjct: 142 -HKPGKVGIVSRSGTLT---YEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKD 197
Query: 221 PQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGG 280
PQ + +V++GE+GG E +K+ V KPVV +++G A K + GHAGA G
Sbjct: 198 PQTEAIVMIGEIGGSAEEEAAAYIKE-HVTKPVVGYIAGVTAPKGK---RMGHAGAIIAG 253
Query: 281 EMESAQAKNQALRDAGAVVPTSYEAFESAIKETFE 315
+A K AL AG S A+K +
Sbjct: 254 GKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK 288
>pdb|2NUA|A Chain A, C123av Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NUA|D Chain D, C123av Mutant Of E. Coli Succinyl-Coa Synthetase
Length = 288
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 99/215 (46%), Gaps = 18/215 (8%)
Query: 104 IRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCK 163
I+++ I EG+P D + +IGP G I G KIG G I
Sbjct: 89 IKLIITITEGIPTLDMLTVKVKLDEAGVRMIGPNVPGVITPGECKIGIQPGHI------- 141
Query: 164 LYRPGSVGFVSKSGGMSNELYNTIARVTD---GIYEGIAIGGDVFPGSTLSDHILRFNNI 220
++PG VG VS+SG ++ Y + + TD G + IGGD PGS D + F
Sbjct: 142 -HKPGKVGIVSRSGTLT---YEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKD 197
Query: 221 PQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGG 280
PQ + +V++GE+GG E +K+ V KPVV +++G A K + GHAGA G
Sbjct: 198 PQTEAIVMIGEIGGSAEEEAAAYIKE-HVTKPVVGYIAGVTAPKGK---RMGHAGAIIAG 253
Query: 281 EMESAQAKNQALRDAGAVVPTSYEAFESAIKETFE 315
+A K AL AG S A+K +
Sbjct: 254 GKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK 288
>pdb|1JKJ|A Chain A, E. Coli Scs
pdb|1JKJ|D Chain D, E. Coli Scs
pdb|1JLL|A Chain A, Crystal Structure Analysis Of The E197betaa Mutant Of E.
Coli Scs
pdb|1JLL|D Chain D, Crystal Structure Analysis Of The E197betaa Mutant Of E.
Coli Scs
Length = 288
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 99/215 (46%), Gaps = 18/215 (8%)
Query: 104 IRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCK 163
I+++ I EG+P D + +IGP G I G KIG G I
Sbjct: 89 IKLIITITEGIPTLDMLTVKVKLDEAGVRMIGPNCPGVITPGECKIGIQPGHI------- 141
Query: 164 LYRPGSVGFVSKSGGMSNELYNTIARVTD---GIYEGIAIGGDVFPGSTLSDHILRFNNI 220
++PG VG VS+SG ++ Y + + TD G + IGGD PGS D + F
Sbjct: 142 -HKPGKVGIVSRSGTLT---YEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKD 197
Query: 221 PQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGG 280
PQ + +V++GE+GG E +K+ V KPVV +++G A K + GHAGA G
Sbjct: 198 PQTEAIVMIGEIGGSAEEEAAAYIKE-HVTKPVVGYIAGVTAPKGK---RMGHAGAIIAG 253
Query: 281 EMESAQAKNQALRDAGAVVPTSYEAFESAIKETFE 315
+A K AL AG S A+K +
Sbjct: 254 GKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK 288
>pdb|1CQI|A Chain A, Crystal Structure Of The Complex Of Adp And Mg2+ With
Dephosphorylated E. Coli Succinyl-Coa Synthetase
pdb|1CQI|D Chain D, Crystal Structure Of The Complex Of Adp And Mg2+ With
Dephosphorylated E. Coli Succinyl-Coa Synthetase
pdb|1CQJ|A Chain A, Crystal Structure Of Dephosphorylated E. Coli Succinyl-Coa
Synthetase
pdb|1CQJ|D Chain D, Crystal Structure Of Dephosphorylated E. Coli Succinyl-Coa
Synthetase
Length = 286
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 98/211 (46%), Gaps = 18/211 (8%)
Query: 104 IRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCK 163
I+++ I EG+P D + +IGP G I G KIG G I
Sbjct: 89 IKLIITITEGIPTLDMLTVKVKLDEAGVRMIGPNCPGVITPGECKIGIQPGHI------- 141
Query: 164 LYRPGSVGFVSKSGGMSNELYNTIARVTD---GIYEGIAIGGDVFPGSTLSDHILRFNNI 220
++PG VG VS+SG ++ Y + + TD G + IGGD PGS D + F
Sbjct: 142 -HKPGKVGIVSRSGTLT---YEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKD 197
Query: 221 PQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGG 280
PQ + +V++GE+GG E +K+ V KPVV +++G A K + GHAGA G
Sbjct: 198 PQTEAIVMIGEIGGSAEEEAAAYIKE-HVTKPVVGYIAGVTAPKGK---RMGHAGAIIAG 253
Query: 281 EMESAQAKNQALRDAGAVVPTSYEAFESAIK 311
+A K AL AG S A+K
Sbjct: 254 GKGTADEKFAALEAAGVKTVRSLADIGEALK 284
>pdb|2NU9|A Chain A, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NU9|D Chain D, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NU9|F Chain F, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NU9|H Chain H, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
Length = 288
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 80/162 (49%), Gaps = 15/162 (9%)
Query: 104 IRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCK 163
I+++ I EG+P D + +IGP T G I G KIG G I
Sbjct: 89 IKLIITITEGIPTLDMLTVKVKLDEAGVRMIGPNTPGVITPGECKIGIQPGHI------- 141
Query: 164 LYRPGSVGFVSKSGGMSNELYNTIARVTD---GIYEGIAIGGDVFPGSTLSDHILRFNNI 220
++PG VG VS+SG ++ Y + + TD G + IGGD PGS D + F
Sbjct: 142 -HKPGKVGIVSRSGTLT---YEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKD 197
Query: 221 PQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCA 262
PQ + +V++GE+GG E +K+ V KPVV +++G A
Sbjct: 198 PQTEAIVMIGEIGGSAEEEAAAYIKE-HVTKPVVGYIAGVTA 238
>pdb|3UFX|A Chain A, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
pdb|3UFX|D Chain D, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
pdb|3UFX|F Chain F, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
pdb|3UFX|H Chain H, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
Length = 296
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 85/313 (27%), Positives = 140/313 (44%), Gaps = 32/313 (10%)
Query: 6 LFSKTTQALFYNYK----QLPIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEI 61
L +K T+ L Q ++ML + T VAG+ PG G + L
Sbjct: 3 LVNKETRVLVQGITGREGQFHTKQMLSYG------TKIVAGV-TPGKGGMEVL------- 48
Query: 62 AIPVHSTVEAACAAHPMADVFINFXXXXXXXXXXXXXLKQPTIRVVAIIAEGVPEADTKQ 121
+PV+ TV+ A A H + D I F I ++ +I EG+P D +
Sbjct: 49 GVPVYDTVKEAVAHHEV-DASIIFVPAPAAADAALEAAHA-GIPLIVLITEGIPTLDMVR 106
Query: 122 LIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSN 181
+ ++ +IG G I A KIG I+ +++ G VG +S+SG ++
Sbjct: 107 AVEEIKALGSRLIGGNCPGIISAEETKIG--------IMPGHVFKRGRVGIISRSGTLTY 158
Query: 182 ELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLV 241
E +++ G + IGGD G+T D + FN P+ + +V++GE+GG DE
Sbjct: 159 EAAAALSQAGLGTTTTVGIGGDPVIGTTFKDLLPLFNEDPETEAVVLIGEIGGSDEEEAA 218
Query: 242 EALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPT 301
+K + KPVV ++ G A K + GHAGA G + + ++K +A +AG V
Sbjct: 219 AWVKD-HMKKPVVGFIGGRSAPKGK---RMGHAGAIIMGNVGTPESKLRAFAEAGIPVAD 274
Query: 302 SYEAFESAIKETF 314
+ + +K+
Sbjct: 275 TIDEIVELVKKAL 287
>pdb|1OI7|A Chain A, The Crystal Structure Of Succinyl-Coa Synthetase Alpha
Subunit From Thermus Thermophilus
Length = 288
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 121/258 (46%), Gaps = 14/258 (5%)
Query: 57 GQEEIAIPVHSTVEAACAAHPMADVFINFXXXXXXXXXXXXXLKQPTIRVVAIIAEGVPE 116
G E + +PV+ TV+ A A H + D I F I ++ +I EG+P
Sbjct: 44 GMEVLGVPVYDTVKEAVAHHEV-DASIIFVPAPAAADAALEAAHA-GIPLIVLITEGIPT 101
Query: 117 ADTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKS 176
D + + ++ +IG G I A KIG I+ +++ G VG +S+S
Sbjct: 102 LDMVRAVEEIKALGSRLIGGNCPGIISAEETKIG--------IMPGHVFKRGRVGIISRS 153
Query: 177 GGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRD 236
G ++ E +++ G + IGGD G+T D + FN P+ + +V++GE+GG D
Sbjct: 154 GTLTYEAAAALSQAGLGTTTTVGIGGDPVIGTTFKDLLPLFNEDPETEAVVLIGEIGGSD 213
Query: 237 EYSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAG 296
E +K + KPVV ++ G A K + GHAGA G + + ++K +A +AG
Sbjct: 214 EEEAAAWVKD-HMKKPVVGFIGGRSAPKGK---RMGHAGAIIMGNVGTPESKLRAFAEAG 269
Query: 297 AVVPTSYEAFESAIKETF 314
V + + +K+
Sbjct: 270 IPVADTIDEIVELVKKAL 287
>pdb|2SCU|A Chain A, A Detailed Description Of The Structure Of Succinyl-Coa
Synthetase From Escherichia Coli
pdb|2SCU|D Chain D, A Detailed Description Of The Structure Of Succinyl-Coa
Synthetase From Escherichia Coli
pdb|1SCU|A Chain A, The Crystal Structure Of Succinyl-Coa Synthetase From
Escherichia Coli At 2.5 Angstroms Resolution
pdb|1SCU|D Chain D, The Crystal Structure Of Succinyl-Coa Synthetase From
Escherichia Coli At 2.5 Angstroms Resolution
Length = 288
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 79/162 (48%), Gaps = 15/162 (9%)
Query: 104 IRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCK 163
I+++ I EG+P D + +IGP G I G KIG G I
Sbjct: 89 IKLIITITEGIPTLDMLTVKVKLDEAGVRMIGPNCPGVITPGECKIGIQPGHI------- 141
Query: 164 LYRPGSVGFVSKSGGMSNELYNTIARVTD---GIYEGIAIGGDVFPGSTLSDHILRFNNI 220
++PG VG VS+SG ++ Y + + TD G + IGGD PGS D + F
Sbjct: 142 -HKPGKVGIVSRSGTLT---YEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKD 197
Query: 221 PQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCA 262
PQ + +V++GE+GG E +K+ V KPVV +++G A
Sbjct: 198 PQTEAIVMIGEIGGSAEEEAAAYIKE-HVTKPVVGYIAGVTA 238
>pdb|2NU6|A Chain A, C123aa Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU6|D Chain D, C123aa Mutant Of E. Coli Succinyl-Coa Synthetase
Length = 288
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 79/162 (48%), Gaps = 15/162 (9%)
Query: 104 IRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCK 163
I+++ I EG+P D + +IGP G I G KIG G I
Sbjct: 89 IKLIITITEGIPTLDMLTVKVKLDEAGVRMIGPNAPGVITPGECKIGIQPGHI------- 141
Query: 164 LYRPGSVGFVSKSGGMSNELYNTIARVTD---GIYEGIAIGGDVFPGSTLSDHILRFNNI 220
++PG VG VS+SG ++ Y + + TD G + IGGD PGS D + F
Sbjct: 142 -HKPGKVGIVSRSGTLT---YEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKD 197
Query: 221 PQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCA 262
PQ + +V++GE+GG E +K+ V KPVV +++G A
Sbjct: 198 PQTEAIVMIGEIGGSAEEEAAAYIKE-HVTKPVVGYIAGVTA 238
>pdb|1EUC|A Chain A, Crystal Structure Of Dephosphorylated Pig Heart, Gtp-
Specific Succinyl-Coa Synthetase
Length = 311
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 109/217 (50%), Gaps = 15/217 (6%)
Query: 104 IRVVAIIAEGVPEADTKQLIA-YARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHC 162
+ +V I EG+P+ D ++ R +IGP G I G KIG G I
Sbjct: 102 VPLVVCITEGIPQQDMVRVKHRLLRQGKTRLIGPNCPGVINPGECKIGIMPGHI------ 155
Query: 163 KLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQ 222
++ G +G VS+SG ++ E + +V G + IGGD F G+ +D + F N P
Sbjct: 156 --HKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPA 213
Query: 223 VKMMVVLGELGGRDEYSLVEALKQ---GKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSG 279
+ ++++GE+GG E + E LKQ G +KPVV++++G A + + GHAGA
Sbjct: 214 TEGIILIGEIGGNAEENAAEFLKQHNSGPKSKPVVSFIAGLTAPPGR---RMGHAGAIIA 270
Query: 280 GEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEK 316
G A+ K AL+ AG VV S + I + FEK
Sbjct: 271 GGKGGAKEKITALQSAGVVVSMSPAQLGTTIYKEFEK 307
>pdb|2FPG|A Chain A, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase In Complex With Gdp
Length = 305
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 109/217 (50%), Gaps = 15/217 (6%)
Query: 104 IRVVAIIAEGVPEADTKQLIA-YARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHC 162
+ +V I EG+P+ D ++ R +IGP G I G KIG G I
Sbjct: 96 VPLVVCITEGIPQQDMVRVKHRLLRQGKTRLIGPNCPGVINPGECKIGIMPGHI------ 149
Query: 163 KLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQ 222
++ G +G VS+SG ++ E + +V G + IGGD F G+ +D + F N P
Sbjct: 150 --HKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPA 207
Query: 223 VKMMVVLGELGGRDEYSLVEALKQ---GKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSG 279
+ ++++GE+GG E + E LKQ G +KPVV++++G A + + GHAGA
Sbjct: 208 TEGIILIGEIGGNAEENAAEFLKQHNSGPKSKPVVSFIAGLTAPPGR---RMGHAGAIIA 264
Query: 280 GEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEK 316
G A+ K AL+ AG VV S + I + FEK
Sbjct: 265 GGKGGAKEKITALQSAGVVVSMSPAQLGTTIYKEFEK 301
>pdb|2YV1|A Chain A, Crystal Structure Of Succinyl-Coa Synthetase Alpha Chain
From Methanocaldococcus Jannaschii Dsm 2661
Length = 294
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 101/196 (51%), Gaps = 13/196 (6%)
Query: 104 IRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCK 163
I ++ +I E +P DT + + YA +IGP T G K+G II +
Sbjct: 95 IELIVVITEHIPVHDTMEFVNYAEDVGVKIIGPNTPGIASPKVGKLG--------IIPME 146
Query: 164 LYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQV 223
+ + GSVG VS+SG ++ E+ + I + G+ + IGGD G + + F +
Sbjct: 147 VLKEGSVGMVSRSGTLTYEIAHQIKKAGFGVSTCVGIGGDPIVGLRYKEVLDLFEKDDET 206
Query: 224 KMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEME 283
+ +V++GE+GG E + ++ K+ KPV+ +++G A K + GHAGA
Sbjct: 207 EAIVMIGEIGGGAEEEAAKFIE--KMKKPVIGYIAGQSAPEGK---RMGHAGAIVEKGKG 261
Query: 284 SAQAKNQALRDAGAVV 299
+A++K +AL +AGA V
Sbjct: 262 TAESKMKALEEAGAYV 277
>pdb|1EUD|A Chain A, Crystal Structure Of Phosphorylated Pig Heart,
Gtp-Specific Succinyl-Coa Synthetase
Length = 311
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 108/217 (49%), Gaps = 15/217 (6%)
Query: 104 IRVVAIIAEGVPEADTKQLIA-YARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHC 162
+ +V I EG+P+ D ++ R +IGP G I G KIG G I
Sbjct: 102 VPLVVCITEGIPQQDMVRVKHRLLRQGKTRLIGPNCPGVINPGECKIGIMPGHI------ 155
Query: 163 KLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQ 222
++ G +G VS+SG ++ E + +V G + IGGD F G+ +D + F N P
Sbjct: 156 --HKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPA 213
Query: 223 VKMMVVLGELGGRDEYSLVEALKQ---GKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSG 279
+ ++++GE+GG E + E LKQ G +KPVV++++G A + + G AGA
Sbjct: 214 TEGIILIGEIGGNAEENAAEFLKQHNSGPKSKPVVSFIAGLTAPPGR---RMGXAGAIIA 270
Query: 280 GEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEK 316
G A+ K AL+ AG VV S + I + FEK
Sbjct: 271 GGKGGAKEKITALQSAGVVVSMSPAQLGTTIYKEFEK 307
>pdb|2FP4|A Chain A, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase In Complex With Gtp
pdb|2FPI|A Chain A, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase From Polyethylene Glycol
pdb|2FPP|A Chain A, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase From Polyethylene Glycol With Chloride Ions
Length = 305
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 108/217 (49%), Gaps = 15/217 (6%)
Query: 104 IRVVAIIAEGVPEADTKQLI-AYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHC 162
+ +V I EG+P+ D ++ R +IGP G I G KIG G I
Sbjct: 96 VPLVVCITEGIPQQDMVRVKHRLLRQGKTRLIGPNCPGVINPGECKIGIMPGHI------ 149
Query: 163 KLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQ 222
++ G +G VS+SG ++ E + +V G + IGGD F G+ +D + F N P
Sbjct: 150 --HKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPA 207
Query: 223 VKMMVVLGELGGRDEYSLVEALKQ---GKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSG 279
+ ++++GE+GG E + E LKQ G +KPVV++++G A + + G AGA
Sbjct: 208 TEGIILIGEIGGNAEENAAEFLKQHNSGPKSKPVVSFIAGLTAPPGR---RMGXAGAIIA 264
Query: 280 GEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEK 316
G A+ K AL+ AG VV S + I + FEK
Sbjct: 265 GGKGGAKEKITALQSAGVVVSMSPAQLGTTIYKEFEK 301
>pdb|2P2W|A Chain A, Crystal Structure Of Citrate Synthase From Thermotoga
Maritima Msb8
Length = 367
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 73/169 (43%), Gaps = 23/169 (13%)
Query: 424 IVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKD--AYDRGLSAYEFVESMKKKG 480
+V A DL S +V L + GP GGA + ++ + DR EFV+ K+
Sbjct: 186 LVIASTLSDLYSCIVGALGALKGPLHGGASEKVPPMLEEIGSEDR---VEEFVQKCLKEK 242
Query: 481 IRVPGIGHRIKRGDNRDKRVELLQKFARTHFPSVKYMEYAVQVETYTLS-KANNLVLNVD 539
++ G GHR+ + D R L++ + HFP K A ++E Y +S K N+ NVD
Sbjct: 243 RKIMGFGHRVYK--TYDPRAVFLKRVLQEHFPDSKLFRIASKLEEYIVSNKIKNIYPNVD 300
Query: 540 GAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFD 588
LF +L MF+ LF AR +G H +
Sbjct: 301 LYSSVLFEELGFPRNMFT--------------ALFATARVVGWTAHVIE 335
>pdb|1O7X|A Chain A, Citrate Synthase From Sulfolobus Solfataricus
pdb|1O7X|B Chain B, Citrate Synthase From Sulfolobus Solfataricus
pdb|1O7X|C Chain C, Citrate Synthase From Sulfolobus Solfataricus
pdb|1O7X|D Chain D, Citrate Synthase From Sulfolobus Solfataricus
Length = 377
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 92/209 (44%), Gaps = 32/209 (15%)
Query: 406 CIMLCADHG-PCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAY 463
++L DH P + A +V A D+ SSL + L + GP GGA ++A + F +
Sbjct: 176 ALILYTDHEVPASTTA--ALVAASTLSDMYSSLTAALAALKGPLHGGAAEEAFKQFIEIG 233
Query: 464 DRGLSAYEFVESMKKKGIRVPGIGHRIKRGDNRDKRVELLQKFART----HFPSVKYMEY 519
D F + + + R+ G GHR+ + D R ++ +K A T + + +Y E
Sbjct: 234 DPNRVQNWFNDKVVNQKNRLMGFGHRVYK--TYDPRAKIFKKLALTLIERNADARRYFEI 291
Query: 520 AVQVETYTLSK--ANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLA 577
A ++E + + + + N D G +F L MF+ LF L+
Sbjct: 292 AQKLEELGIKQFSSKGIYPNTDFYSGIVFYALGFPVYMFT--------------ALFALS 337
Query: 578 RSIGLIGHTF----DQKRLKQP--LYRHP 600
R++G + H +Q RL +P LY P
Sbjct: 338 RTLGWLAHIIEYVEEQHRLIRPRALYVGP 366
>pdb|1IOM|A Chain A, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
pdb|1IXE|A Chain A, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
pdb|1IXE|B Chain B, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
pdb|1IXE|C Chain C, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
pdb|1IXE|D Chain D, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
Length = 377
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 89/205 (43%), Gaps = 24/205 (11%)
Query: 400 TQFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARY 458
+ ++ ++L A+HG S I DL S++ + + ++ GPR GGA + R
Sbjct: 171 ARLMDAALILHAEHGFNAS-TFTAIAAFSTETDLYSAITAAVASLKGPRHGGANEAVMRM 229
Query: 459 FKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGDNRDKRVELLQKFAR----THFPSV 514
++ A E+V K R+ G+GHR+ + D R +L+K AR H S
Sbjct: 230 IQEI-GTPERAREWVREKLAKKERIMGMGHRVYKAF--DPRAGVLEKLARLVAEKHGHSK 286
Query: 515 KY-MEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGL 573
+Y + V+ E + + NVD G ++ DL FS + + +
Sbjct: 287 EYQILKIVEEEAGKVLNPRGIYPNVDFYSGVVYSDL-----GFS---------LEFFTPI 332
Query: 574 FVLARSIGLIGHTFDQKRLKQPLYR 598
F +AR G +GH + + L L R
Sbjct: 333 FAVARISGWVGHILEYQELDNRLLR 357
>pdb|2C6X|A Chain A, Structure Of Bacillus Subtilis Citrate Synthase
pdb|2C6X|B Chain B, Structure Of Bacillus Subtilis Citrate Synthase
pdb|2C6X|C Chain C, Structure Of Bacillus Subtilis Citrate Synthase
pdb|2C6X|D Chain D, Structure Of Bacillus Subtilis Citrate Synthase
Length = 363
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 63/123 (51%), Gaps = 5/123 (4%)
Query: 403 IEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKD 461
+E ++L +HG S + VT DLVS++ + L T+ GP GGA + +D
Sbjct: 167 LETYMILATEHGMNAS-TFSARVTLSTESDLVSAVTAALGTMKGPLHGGAPSAVTKMLED 225
Query: 462 AYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGDNRDKRVELLQKFARTHFPSVKYMEYAV 521
++ A +++ +KG R+ G GHR+ + +D R E L++ A + + ++ A+
Sbjct: 226 IGEKE-HAEAYLKEKLEKGERLMGFGHRVYK--TKDPRAEALRQKAEEVAGNDRDLDLAL 282
Query: 522 QVE 524
VE
Sbjct: 283 HVE 285
>pdb|2IFC|A Chain A, The Structure Of The Binary Complex Of Oxalateacetate With
Citrate Synthase From The Thermophilic Archaeon
Thermolasma Acidophilum
pdb|2IFC|B Chain B, The Structure Of The Binary Complex Of Oxalateacetate With
Citrate Synthase From The Thermophilic Archaeon
Thermolasma Acidophilum
pdb|2IFC|C Chain C, The Structure Of The Binary Complex Of Oxalateacetate With
Citrate Synthase From The Thermophilic Archaeon
Thermolasma Acidophilum
pdb|2IFC|D Chain D, The Structure Of The Binary Complex Of Oxalateacetate With
Citrate Synthase From The Thermophilic Archaeon
Thermolasma Acidophilum
pdb|2R9E|A Chain A, The Structure Of The Binary Complex Of Citryl Dethia Coa
And Citrate Synthase From The Thermophilic
Archaeonthermoplasma Acidophilum
pdb|2R9E|B Chain B, The Structure Of The Binary Complex Of Citryl Dethia Coa
And Citrate Synthase From The Thermophilic
Archaeonthermoplasma Acidophilum
pdb|2R9E|C Chain C, The Structure Of The Binary Complex Of Citryl Dethia Coa
And Citrate Synthase From The Thermophilic
Archaeonthermoplasma Acidophilum
pdb|2R9E|D Chain D, The Structure Of The Binary Complex Of Citryl Dethia Coa
And Citrate Synthase From The Thermophilic
Archaeonthermoplasma Acidophilum
Length = 385
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 87/215 (40%), Gaps = 24/215 (11%)
Query: 391 FKRSLPRYCTQFIEICIMLCADHG-PCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRF 448
F R + + ++L DH P + A +V D+ S + + L + GP
Sbjct: 166 FGRKATKEEIDAMNTALILYTDHEVPASTTA--GLVAVSTLSDMYSGITAALAALKGPLH 223
Query: 449 GGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRI-KRGDNRDKRVELLQKFA 507
GGA + A F + D + F +++ R+ G GHR+ K D R K + + +
Sbjct: 224 GGAAEAAIAQFDEIKDPAMVEKWFNDNIINGKKRLMGFGHRVYKTYDPRAKIFKGIAEKL 283
Query: 508 RTHFPSV-KYMEYAVQVETYTLSK--ANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEI 564
+ P V K E A ++E + + + + N D G +++ + G + I
Sbjct: 284 SSKKPEVHKVYEIATKLEDFGIKAFGSKGIYPNTDYFSGIVYMSI----GFPLRNNI--- 336
Query: 565 VEIGYLNGLFVLARSIGLIGHTF----DQKRLKQP 595
LF L+R G H +Q+RL +P
Sbjct: 337 -----YTALFALSRVTGWQAHFIEYVEEQQRLIRP 366
>pdb|2R26|A Chain A, The Structure Of The Ternary Complex Of Carboxymethyl
Coenzyme A And Oxalateacetate With Citrate Synthase From
The Thermophilic Archaeonthermoplasma Acidophilum
pdb|2R26|B Chain B, The Structure Of The Ternary Complex Of Carboxymethyl
Coenzyme A And Oxalateacetate With Citrate Synthase From
The Thermophilic Archaeonthermoplasma Acidophilum
pdb|2R26|C Chain C, The Structure Of The Ternary Complex Of Carboxymethyl
Coenzyme A And Oxalateacetate With Citrate Synthase From
The Thermophilic Archaeonthermoplasma Acidophilum
pdb|2R26|D Chain D, The Structure Of The Ternary Complex Of Carboxymethyl
Coenzyme A And Oxalateacetate With Citrate Synthase From
The Thermophilic Archaeonthermoplasma Acidophilum
Length = 384
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 87/215 (40%), Gaps = 24/215 (11%)
Query: 391 FKRSLPRYCTQFIEICIMLCADHG-PCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRF 448
F R + + ++L DH P + A +V D+ S + + L + GP
Sbjct: 165 FGRKATKEEIDAMNTALILYTDHEVPASTTA--GLVAVSTLSDMYSGITAALAALKGPLH 222
Query: 449 GGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRI-KRGDNRDKRVELLQKFA 507
GGA + A F + D + F +++ R+ G GHR+ K D R K + + +
Sbjct: 223 GGAAEAAIAQFDEIKDPAMVEKWFNDNIINGKKRLMGFGHRVYKTYDPRAKIFKGIAEKL 282
Query: 508 RTHFPSV-KYMEYAVQVETYTLSK--ANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEI 564
+ P V K E A ++E + + + + N D G +++ + G + I
Sbjct: 283 SSKKPEVHKVYEIATKLEDFGIKAFGSKGIYPNTDYFSGIVYMSI----GFPLRNNI--- 335
Query: 565 VEIGYLNGLFVLARSIGLIGHTF----DQKRLKQP 595
LF L+R G H +Q+RL +P
Sbjct: 336 -----YTALFALSRVTGWQAHFIEYVEEQQRLIRP 365
>pdb|3HWK|A Chain A, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|B Chain B, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|C Chain C, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|D Chain D, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|E Chain E, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|F Chain F, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|G Chain G, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|H Chain H, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
Length = 414
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 39/187 (20%), Positives = 79/187 (42%), Gaps = 17/187 (9%)
Query: 404 EICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAY 463
E ++L A+HG S +VT+ D+ S++ + + R G ++A +
Sbjct: 219 EQSMILYAEHGFNASTFAARVVTS-TQSDIYSAVTGAIGALKGRLHGGANEAVMHDMIEI 277
Query: 464 DRGLSAYEFVESMKKKGIRVPGIGHRIKR-GDNRDKRVELLQKFARTHFPSVKYMEYAVQ 522
+A E++ + + ++ G GHR+ R GD+R ++ + T ++++ Q
Sbjct: 278 GDPANAREWLRAKLARKEKIMGFGHRVYRHGDSRVPTMKRALERVGTVRDGQRWLDI-YQ 336
Query: 523 VETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGL 582
V ++ A ++ N+D G + L G +I +FV++R G
Sbjct: 337 VLAAEMASATGILPNLDFPTGPAY--YLMG------------FDIASFTPIFVMSRITGW 382
Query: 583 IGHTFDQ 589
H +Q
Sbjct: 383 TAHIMEQ 389
>pdb|2H12|A Chain A, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
pdb|2H12|B Chain B, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
pdb|2H12|C Chain C, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
pdb|2H12|D Chain D, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
pdb|2H12|E Chain E, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
pdb|2H12|F Chain F, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
Length = 436
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 79/191 (41%), Gaps = 30/191 (15%)
Query: 407 IMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDR 465
++L ADH S + + G + + + +G+ + GP GGA ++A +
Sbjct: 231 LILHADHEQNASTS-TVRLAGSTGANPFACIAAGIAALWGPAHGGA-NEAVLKMLARIGK 288
Query: 466 GLSAYEFVESMKKK--GIRVPGIGHRIKRGDNRDKRVELLQKFARTHFPSV-----KYME 518
+ F+ +K K G+++ G GHR+ + N D R +++Q+ + ++
Sbjct: 289 KENIPAFIAQVKDKNSGVKLMGFGHRVYK--NFDPRAKIMQQTCHEVLTELGIKDDPLLD 346
Query: 519 YAVQVETYTLSK----ANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLF 574
AV++E LS L NVD G + + + MF+ LF
Sbjct: 347 LAVELEKIALSDDYFVQRKLYPNVDFYSGIILKAMGIPTSMFTV--------------LF 392
Query: 575 VLARSIGLIGH 585
+AR+ G +
Sbjct: 393 AVARTTGWVSQ 403
>pdb|3NIY|A Chain A, Crystal Structure Of Native Xylanase 10b From Thermotoga
Petrophila Rku-1
pdb|3NIY|B Chain B, Crystal Structure Of Native Xylanase 10b From Thermotoga
Petrophila Rku-1
pdb|3NJ3|A Chain A, Crystal Structure Of Xylanase 10b From Thermotoga
Petrophila Rku-1 In Complex With Xylobiose
pdb|3NJ3|B Chain B, Crystal Structure Of Xylanase 10b From Thermotoga
Petrophila Rku-1 In Complex With Xylobiose
Length = 341
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 22/85 (25%)
Query: 443 TIGPRFGGAIDDAARYFKDA-------YD---------RGLSAYEFVESMKKKGIRVPGI 486
TIGP + I+ A R+ K+A Y+ + Y ++ +K+KG+ V GI
Sbjct: 166 TIGPEY---IEKAFRWTKEADPDAILIYNDYSIEEINAKSNFVYNMIKELKEKGVPVDGI 222
Query: 487 GHRIK---RGDNRDKRVELLQKFAR 508
G ++ RG N D L++FA+
Sbjct: 223 GFQMHIDYRGLNYDSFRRNLERFAK 247
>pdb|4H63|V Chain V, Structure Of The Schizosaccharomyces Pombe Mediator Head
Module
Length = 135
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 31/109 (28%), Positives = 45/109 (41%), Gaps = 11/109 (10%)
Query: 433 LVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGLSAYEF---VESMKKKGIRVPGIGHR 489
L SS+ + LTI RF +D A KD Y Y+ SM + ++ + +
Sbjct: 16 LNSSIDNATLTILSRFQDILDIAINEGKDKYTVAPEVYQIECHTVSMVRAVEQLLDVSRQ 75
Query: 490 IKRGDNRDKRVELLQKFARTHFPSVKYMEYAVQVETYTLSKANNLVLNV 538
IK L T FP+V Y E ++ TL+K N +L V
Sbjct: 76 IKS--------YWLTNSLSTSFPTVDYSEPDLEKVKRTLTKLQNHLLEV 116
>pdb|1VBR|A Chain A, Crystal Structure Of Complex Xylanase 10b From Thermotoga
Maritima With Xylobiose
pdb|1VBR|B Chain B, Crystal Structure Of Complex Xylanase 10b From Thermotoga
Maritima With Xylobiose
pdb|1VBU|A Chain A, Crystal Structure Of Native Xylanase 10b From Thermotoga
Maritima
pdb|1VBU|B Chain B, Crystal Structure Of Native Xylanase 10b From Thermotoga
Maritima
Length = 328
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 22/85 (25%)
Query: 443 TIGPRFGGAIDDAARYFKDA-------YD---------RGLSAYEFVESMKKKGIRVPGI 486
TIGP + I+ A R+ K+A Y+ + Y ++ +K+KG+ V GI
Sbjct: 150 TIGPEY---IEKAFRWAKEADPDAILIYNDYSIEEINAKSNFVYNMIKELKEKGVPVDGI 206
Query: 487 GHRIK---RGDNRDKRVELLQKFAR 508
G ++ RG N D L++FA+
Sbjct: 207 GFQMHIDYRGLNYDSFRRNLERFAK 231
>pdb|3O8J|A Chain A, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|B Chain B, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|C Chain C, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|D Chain D, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|E Chain E, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|F Chain F, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|G Chain G, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|H Chain H, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|I Chain I, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|J Chain J, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
Length = 404
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 80/191 (41%), Gaps = 19/191 (9%)
Query: 403 IEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKD 461
+ I ++L A+H S + V A G D+ S+++ + + GP+ GGA ++ + +
Sbjct: 205 MHISLVLYAEHEFNAS-TFTSRVIAGTGSDVYSAIIGAIGALRGPKHGGA-NEVSLEIQQ 262
Query: 462 AYDRGLSAYEFVESMKKKGIRVPGIGHRIKR-GDNRDKRVELLQKFARTHFPSVKYMEYA 520
Y+ A + + V G GH + D R + ++ + K S+K A
Sbjct: 263 RYETPDEAEADIRKRVENKEVVIGFGHPVYTIADPRHQVIKRVAKQLSEEGGSLKMYHIA 322
Query: 521 VQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSI 580
++ET + + + N+D + + + MF+ LFV+AR
Sbjct: 323 DRLET-VMWETKKMFPNLDWFSAVSYNMMGVPTEMFTP--------------LFVIARVT 367
Query: 581 GLIGHTFDQKR 591
G H +Q++
Sbjct: 368 GWAAHIIEQRQ 378
>pdb|3LMK|A Chain A, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
Mglur5 Complexed With Glutamate
pdb|3LMK|B Chain B, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
Mglur5 Complexed With Glutamate
Length = 492
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 35/177 (19%), Positives = 75/177 (42%), Gaps = 23/177 (12%)
Query: 157 DNIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIA----IGGDVFPGST--- 209
D+ H + S+ F+ S +S+E + R DG I G + PGS+
Sbjct: 84 DSCWHSAVALEQSIEFIRDSL-ISSEEEEGLVRCVDGSSSSFRSKKPIVGVIGPGSSSVA 142
Query: 210 -LSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEAL-----KQGKVNKPVVAWVSGTCAR 263
++L+ NIPQ+ +L + + + +Q + +V + T
Sbjct: 143 IQVQNLLQLFNIPQIAYSATSMDLSDKTLFKYFMRVVPSDAQQARAMVDIVKRYNWTYVS 202
Query: 264 LFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEKLVEE 320
+E +G +G ++ +M + + G + SY+ + +A +++F+KL+++
Sbjct: 203 AVHTEGNYGESGMEAFKDMSAKE---------GISIAHSYKIYSNAGEQSFDKLLKK 250
>pdb|3DMY|A Chain A, Crystal Structure Of A Predicated Acyl-Coa Synthetase From
E.Coli
pdb|3DMY|B Chain B, Crystal Structure Of A Predicated Acyl-Coa Synthetase From
E.Coli
Length = 480
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 37/96 (38%), Gaps = 11/96 (11%)
Query: 107 VAIIAEGVPEADTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYR 166
V ++ V D QL AR +V GP G I T N+
Sbjct: 63 VXXFSDNVTLEDEIQLKTRAREKGLLVXGP------DCGTSXIAGTPLAFANV-----XP 111
Query: 167 PGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGG 202
G++G + SG EL + IA +GI I +GG
Sbjct: 112 EGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGG 147
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,939,778
Number of Sequences: 62578
Number of extensions: 768550
Number of successful extensions: 2112
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 2055
Number of HSP's gapped (non-prelim): 43
length of query: 608
length of database: 14,973,337
effective HSP length: 104
effective length of query: 504
effective length of database: 8,465,225
effective search space: 4266473400
effective search space used: 4266473400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)