Query 007327
Match_columns 608
No_of_seqs 333 out of 2819
Neff 6.7
Searched_HMMs 46136
Date Thu Mar 28 22:04:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007327.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007327hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02522 ATP citrate (pro-S)-l 100.0 8E-136 2E-140 1129.6 57.1 608 1-608 1-608 (608)
2 TIGR02717 AcCoA-syn-alpha acet 100.0 4.6E-65 9.9E-70 558.5 26.7 307 3-362 1-319 (447)
3 PRK05678 succinyl-CoA syntheta 100.0 4.9E-64 1.1E-68 518.2 31.6 283 4-316 2-290 (291)
4 TIGR01019 sucCoAalpha succinyl 100.0 6.6E-64 1.4E-68 516.1 30.3 279 5-313 1-285 (286)
5 PLN00125 Succinyl-CoA ligase [ 100.0 8.2E-64 1.8E-68 517.1 29.5 281 4-316 6-296 (300)
6 KOG1254 ATP-citrate lyase [Ene 100.0 1.1E-62 2.3E-67 515.0 23.3 599 3-608 2-600 (600)
7 PTZ00187 succinyl-CoA syntheta 100.0 5.1E-61 1.1E-65 497.5 31.7 282 4-316 23-315 (317)
8 COG0372 GltA Citrate synthase 100.0 1.1E-58 2.4E-63 491.5 20.8 244 336-606 128-379 (390)
9 PRK12350 citrate synthase 2; P 100.0 7.2E-56 1.6E-60 466.8 20.5 231 338-599 99-340 (353)
10 cd06116 CaCS_like Chloroflexus 100.0 2.4E-55 5.1E-60 469.1 22.2 250 322-599 106-373 (384)
11 cd06115 AthCS_per_like Arabido 100.0 2.8E-55 6E-60 471.2 21.7 236 336-599 147-400 (410)
12 cd06109 BsCS-I_like Bacillus s 100.0 2.6E-55 5.6E-60 464.3 20.7 234 337-599 103-343 (349)
13 PRK14035 citrate synthase; Pro 100.0 4.7E-55 1E-59 464.9 22.1 249 321-599 102-357 (371)
14 PRK12351 methylcitrate synthas 100.0 4.4E-55 9.5E-60 465.7 20.7 245 320-593 107-355 (378)
15 cd06107 EcCS_AthCS-per_like Es 100.0 6.2E-55 1.4E-59 465.6 21.6 238 335-600 126-377 (382)
16 TIGR01798 cit_synth_I citrate 100.0 2.2E-54 4.9E-59 464.4 22.0 236 336-599 147-400 (412)
17 PRK14036 citrate synthase; Pro 100.0 2.1E-54 4.6E-59 461.2 21.1 249 322-599 105-362 (377)
18 PRK14034 citrate synthase; Pro 100.0 2.9E-54 6.3E-59 459.0 21.3 242 321-592 102-347 (372)
19 cd06108 Ec2MCS_like Escherichi 100.0 4E-54 8.7E-59 456.6 21.5 229 337-593 111-343 (363)
20 cd06117 Ec2MCS_like_1 Subgroup 100.0 5.1E-54 1.1E-58 456.6 21.4 244 321-593 99-346 (366)
21 PRK05614 gltA type II citrate 100.0 6.7E-54 1.4E-58 462.1 22.2 250 322-599 146-412 (419)
22 cd06101 citrate_synt Citrate s 100.0 3.7E-54 8E-59 440.6 18.6 233 349-599 5-261 (265)
23 PRK14037 citrate synthase; Pro 100.0 1.4E-53 3E-58 455.0 22.4 234 337-598 117-358 (377)
24 cd06106 ScCit3_like Saccharomy 100.0 7.1E-54 1.5E-58 461.4 19.7 240 336-601 166-422 (428)
25 PLN02456 citrate synthase 100.0 9.9E-54 2.1E-58 464.0 20.8 237 335-599 185-440 (455)
26 cd06112 citrate_synt_like_1_1 100.0 3.1E-53 6.8E-58 452.4 23.4 252 320-599 100-362 (373)
27 TIGR01793 cit_synth_euk citrat 100.0 1.9E-53 4.2E-58 457.3 19.8 240 334-601 167-421 (427)
28 cd06111 DsCS_like Cold-active 100.0 4.4E-53 9.6E-58 449.7 22.0 248 321-599 99-350 (362)
29 cd06103 ScCS-like Saccharomyce 100.0 2.7E-53 6E-58 457.2 19.4 239 336-601 167-420 (426)
30 cd06114 EcCS_like Escherichia 100.0 5.4E-53 1.2E-57 453.6 21.5 249 323-599 129-394 (400)
31 COG1042 Acyl-CoA synthetase (N 100.0 1.1E-52 2.4E-57 468.4 22.7 279 2-315 3-293 (598)
32 PRK14033 citrate synthase; Pro 100.0 1.3E-52 2.7E-57 447.7 21.9 244 320-593 108-355 (375)
33 cd06105 ScCit1-2_like Saccharo 100.0 8.4E-53 1.8E-57 453.0 19.7 238 335-600 165-417 (427)
34 PRK12349 citrate synthase 3; P 100.0 1.3E-52 2.8E-57 447.1 20.0 244 321-593 105-352 (369)
35 cd06118 citrate_synt_like_1 Ci 100.0 2.4E-52 5.2E-57 445.1 22.0 252 319-599 97-354 (358)
36 cd06110 BSuCS-II_like Bacillus 100.0 3.1E-52 6.8E-57 443.6 22.8 247 322-599 100-350 (356)
37 PRK09569 type I citrate syntha 100.0 3.3E-52 7.1E-57 449.6 21.5 236 335-600 168-420 (437)
38 TIGR01800 cit_synth_II 2-methy 100.0 3.1E-52 6.7E-57 444.8 21.1 243 321-593 99-345 (368)
39 PRK14032 citrate synthase; Pro 100.0 2.5E-52 5.4E-57 452.7 20.5 253 321-599 150-434 (447)
40 cd06113 citrate_synt_like_1_2 100.0 4E-52 8.6E-57 447.7 21.8 256 318-599 117-400 (406)
41 cd06102 citrate_synt_like_2 Ci 100.0 2.7E-52 5.8E-57 428.0 19.2 224 353-599 21-276 (282)
42 PRK06224 citrate synthase; Pro 100.0 3E-52 6.4E-57 426.9 19.1 239 351-607 7-255 (263)
43 PF00285 Citrate_synt: Citrate 100.0 2.6E-52 5.7E-57 444.9 14.3 237 336-599 113-356 (356)
44 COG0074 SucD Succinyl-CoA synt 100.0 1.2E-49 2.5E-54 398.0 29.2 285 4-315 2-290 (293)
45 cd06099 CS_ACL-C_CCL Citrate s 100.0 1.8E-50 3.9E-55 401.4 19.3 201 381-599 2-209 (213)
46 cd06100 CCL_ACL-C Citryl-CoA l 100.0 3.6E-50 7.7E-55 403.7 19.8 220 369-606 1-227 (227)
47 KOG1255 Succinyl-CoA synthetas 100.0 4.3E-43 9.2E-48 340.0 24.9 281 5-312 33-321 (329)
48 PF13607 Succ_CoA_lig: Succiny 100.0 2.1E-41 4.5E-46 314.1 10.7 137 167-312 1-137 (138)
49 PRK06091 membrane protein FdrA 100.0 5.9E-40 1.3E-44 358.2 22.6 208 63-315 102-317 (555)
50 KOG2617 Citrate synthase [Ener 100.0 2.1E-37 4.6E-42 319.5 14.5 240 332-600 186-439 (458)
51 PF13380 CoA_binding_2: CoA bi 99.8 6.5E-20 1.4E-24 165.8 7.1 110 10-144 1-116 (116)
52 COG1832 Predicted CoA-binding 98.8 6.8E-09 1.5E-13 94.9 6.7 111 6-141 13-131 (140)
53 PF00549 Ligase_CoA: CoA-ligas 98.8 2E-08 4.4E-13 95.0 9.1 121 173-311 1-151 (153)
54 PF02629 CoA_binding: CoA bind 98.6 1.4E-07 3E-12 82.5 8.6 89 10-113 4-96 (96)
55 PF01113 DapB_N: Dihydrodipico 98.0 1.2E-05 2.6E-10 73.5 7.2 113 11-137 2-123 (124)
56 TIGR00036 dapB dihydrodipicoli 97.8 0.00012 2.7E-09 75.7 10.2 122 11-142 3-132 (266)
57 COG0289 DapB Dihydrodipicolina 97.7 0.0003 6.4E-09 71.8 11.3 121 9-142 2-131 (266)
58 TIGR02717 AcCoA-syn-alpha acet 97.6 0.011 2.5E-07 65.7 22.9 200 77-314 202-444 (447)
59 PRK00048 dihydrodipicolinate r 97.5 0.00079 1.7E-08 69.3 11.0 116 9-141 1-121 (257)
60 TIGR01016 sucCoAbeta succinyl- 97.3 0.0019 4E-08 70.5 12.4 122 166-311 255-382 (386)
61 PRK00696 sucC succinyl-CoA syn 97.3 0.0021 4.5E-08 70.1 12.6 123 167-313 256-384 (388)
62 PLN02775 Probable dihydrodipic 97.2 0.0043 9.3E-08 64.6 12.3 120 8-142 9-141 (286)
63 PRK12349 citrate synthase 3; P 97.0 0.0028 6.1E-08 68.6 10.0 89 351-445 13-105 (369)
64 PRK14046 malate--CoA ligase su 97.0 0.0067 1.4E-07 66.3 12.0 122 166-311 255-382 (392)
65 PF01408 GFO_IDH_MocA: Oxidore 96.8 0.0039 8.5E-08 55.7 7.4 111 11-133 2-116 (120)
66 PRK13303 L-aspartate dehydroge 96.8 0.0043 9.2E-08 64.2 8.3 119 10-141 2-125 (265)
67 TIGR02130 dapB_plant dihydrodi 96.7 0.012 2.5E-07 61.1 11.0 114 12-142 2-130 (275)
68 cd06112 citrate_synt_like_1_1 96.7 0.0066 1.4E-07 65.9 9.0 92 349-446 7-102 (373)
69 PRK14037 citrate synthase; Pro 96.7 0.0067 1.5E-07 65.9 9.0 92 349-446 10-105 (377)
70 PRK14036 citrate synthase; Pro 96.6 0.0077 1.7E-07 65.4 9.4 92 349-446 10-105 (377)
71 PLN00124 succinyl-CoA ligase [ 96.6 0.033 7.1E-07 61.4 13.8 121 166-310 290-416 (422)
72 cd06118 citrate_synt_like_1 Ci 96.6 0.0026 5.7E-08 68.7 5.1 90 350-445 6-99 (358)
73 COG0045 SucC Succinyl-CoA synt 96.5 0.044 9.6E-07 58.8 13.7 124 166-313 254-383 (387)
74 cd06108 Ec2MCS_like Escherichi 96.4 0.016 3.5E-07 62.6 9.8 108 349-462 5-121 (363)
75 TIGR01800 cit_synth_II 2-methy 96.3 0.019 4.2E-07 62.2 10.0 90 349-444 5-98 (368)
76 cd06115 AthCS_per_like Arabido 96.3 0.02 4.3E-07 62.9 10.1 92 348-445 30-125 (410)
77 cd06109 BsCS-I_like Bacillus s 96.2 0.022 4.8E-07 61.3 9.8 107 349-462 5-113 (349)
78 PRK14035 citrate synthase; Pro 96.2 0.022 4.7E-07 61.8 9.3 92 349-445 9-102 (371)
79 cd06116 CaCS_like Chloroflexus 96.1 0.026 5.7E-07 61.5 9.8 95 348-446 10-106 (384)
80 PRK13302 putative L-aspartate 96.1 0.015 3.2E-07 60.5 7.5 119 8-140 5-127 (271)
81 PRK13304 L-aspartate dehydroge 96.1 0.018 3.8E-07 59.6 8.0 112 10-134 2-117 (265)
82 PRK14032 citrate synthase; Pro 96.1 0.0086 1.9E-07 66.4 5.9 95 349-447 40-152 (447)
83 PRK12351 methylcitrate synthas 96.1 0.032 6.8E-07 60.7 10.1 92 349-446 14-109 (378)
84 cd06113 citrate_synt_like_1_2 96.0 0.0075 1.6E-07 66.1 5.1 81 364-448 37-123 (406)
85 PF03446 NAD_binding_2: NAD bi 96.0 0.024 5.2E-07 54.1 7.7 110 10-134 2-116 (163)
86 cd06107 EcCS_AthCS-per_like Es 96.0 0.039 8.5E-07 60.1 10.1 92 349-446 11-106 (382)
87 PRK14033 citrate synthase; Pro 95.9 0.029 6.3E-07 61.0 9.0 92 348-445 14-109 (375)
88 cd06110 BSuCS-II_like Bacillus 95.9 0.0078 1.7E-07 65.0 4.5 91 349-445 5-99 (356)
89 TIGR01798 cit_synth_I citrate 95.9 0.035 7.5E-07 61.0 9.5 93 347-445 36-132 (412)
90 PRK14034 citrate synthase; Pro 95.6 0.071 1.5E-06 57.9 10.5 91 349-445 9-102 (372)
91 PLN02456 citrate synthase 95.6 0.053 1.2E-06 60.3 9.6 93 347-445 68-164 (455)
92 cd06105 ScCit1-2_like Saccharo 95.5 0.1 2.3E-06 57.5 11.5 97 344-446 37-145 (427)
93 PRK09569 type I citrate syntha 95.5 0.17 3.6E-06 56.1 13.1 97 345-444 40-145 (437)
94 cd06111 DsCS_like Cold-active 95.5 0.016 3.5E-07 62.6 5.0 91 349-445 5-99 (362)
95 PRK11579 putative oxidoreducta 95.5 0.074 1.6E-06 57.0 9.8 115 9-137 4-123 (346)
96 cd06117 Ec2MCS_like_1 Subgroup 95.4 0.02 4.4E-07 62.0 5.1 91 349-445 5-99 (366)
97 cd06106 ScCit3_like Saccharomy 95.3 0.13 2.8E-06 56.8 11.1 98 343-446 36-145 (428)
98 TIGR01761 thiaz-red thiazoliny 94.8 0.096 2.1E-06 56.3 8.3 112 8-134 2-119 (343)
99 TIGR03855 NAD_NadX aspartate d 94.6 0.07 1.5E-06 54.1 6.4 78 60-141 21-101 (229)
100 COG0673 MviM Predicted dehydro 94.6 0.14 3.1E-06 54.1 9.0 117 8-138 2-127 (342)
101 COG2344 AT-rich DNA-binding pr 94.4 0.15 3.2E-06 49.8 7.5 90 11-112 86-179 (211)
102 PRK09599 6-phosphogluconate de 94.3 0.23 5E-06 52.2 9.7 113 10-134 1-116 (301)
103 TIGR01793 cit_synth_euk citrat 94.2 0.071 1.5E-06 58.8 5.6 97 344-446 40-148 (427)
104 cd06103 ScCS-like Saccharomyce 94.1 0.074 1.6E-06 58.7 5.5 97 345-446 38-145 (426)
105 PLN02350 phosphogluconate dehy 94.0 0.44 9.6E-06 53.7 11.5 118 11-137 8-132 (493)
106 PRK12490 6-phosphogluconate de 93.8 0.35 7.7E-06 50.8 9.8 111 11-133 2-115 (299)
107 PLN02235 ATP citrate (pro-S)-l 93.6 0.56 1.2E-05 51.6 11.2 129 166-314 268-416 (423)
108 cd06114 EcCS_like Escherichia 93.5 0.084 1.8E-06 57.9 4.7 92 348-445 32-127 (400)
109 PRK05614 gltA type II citrate 93.5 0.082 1.8E-06 58.3 4.7 91 349-445 51-145 (419)
110 PF00285 Citrate_synt: Citrate 93.3 0.031 6.8E-07 60.3 0.9 90 349-444 4-97 (356)
111 COG2084 MmsB 3-hydroxyisobutyr 93.3 0.46 9.9E-06 49.8 9.4 116 10-141 1-125 (286)
112 PTZ00142 6-phosphogluconate de 93.1 0.51 1.1E-05 53.0 10.0 118 11-137 3-126 (470)
113 TIGR00872 gnd_rel 6-phosphoglu 93.0 0.46 1E-05 49.9 9.2 113 10-135 1-116 (298)
114 PRK05472 redox-sensing transcr 93.0 0.39 8.4E-06 48.0 8.1 89 8-112 83-179 (213)
115 PRK15059 tartronate semialdehy 92.9 0.41 8.9E-06 50.2 8.5 109 11-135 2-116 (292)
116 PRK05479 ketol-acid reductoiso 92.8 0.68 1.5E-05 49.5 10.2 97 5-117 13-113 (330)
117 PRK11559 garR tartronate semia 92.8 0.7 1.5E-05 48.2 10.2 109 10-133 3-117 (296)
118 TIGR01692 HIBADH 3-hydroxyisob 92.7 0.4 8.7E-06 50.0 8.3 100 21-135 10-113 (288)
119 TIGR01921 DAP-DH diaminopimela 92.5 0.63 1.4E-05 49.6 9.4 112 9-135 3-118 (324)
120 TIGR01505 tartro_sem_red 2-hyd 92.3 0.75 1.6E-05 48.0 9.5 110 11-135 1-116 (291)
121 COG0059 IlvC Ketol-acid reduct 92.1 0.33 7.2E-06 50.8 6.4 95 6-116 15-113 (338)
122 PRK07634 pyrroline-5-carboxyla 91.3 0.62 1.3E-05 47.0 7.5 100 8-117 3-105 (245)
123 TIGR00873 gnd 6-phosphoglucona 91.3 1.1 2.3E-05 50.4 9.8 115 12-136 2-122 (467)
124 PRK15461 NADH-dependent gamma- 91.1 1.4 3E-05 46.2 10.1 109 11-134 3-117 (296)
125 PRK10206 putative oxidoreducta 90.6 0.99 2.1E-05 48.5 8.5 69 62-133 49-118 (344)
126 PLN02819 lysine-ketoglutarate 90.5 0.87 1.9E-05 55.6 8.8 123 63-200 632-756 (1042)
127 PRK13403 ketol-acid reductoiso 89.9 1.1 2.5E-05 47.7 8.0 95 5-116 12-110 (335)
128 PRK14618 NAD(P)H-dependent gly 89.1 1.2 2.5E-05 47.4 7.6 116 9-138 4-137 (328)
129 PRK13301 putative L-aspartate 89.1 2 4.4E-05 44.5 8.9 71 63-136 49-120 (267)
130 PRK09287 6-phosphogluconate de 88.7 2.1 4.5E-05 48.0 9.5 108 20-137 3-114 (459)
131 PF02593 dTMP_synthase: Thymid 88.1 5.1 0.00011 40.4 10.8 103 18-138 8-111 (217)
132 COG1712 Predicted dinucleotide 88.0 2.8 6E-05 42.4 8.7 113 11-136 2-118 (255)
133 PRK07680 late competence prote 87.7 1.2 2.7E-05 45.9 6.6 95 11-115 2-100 (273)
134 PRK12350 citrate synthase 2; P 87.6 0.3 6.5E-06 52.7 1.9 49 349-398 7-57 (353)
135 PF07991 IlvN: Acetohydroxy ac 87.4 0.71 1.5E-05 44.3 4.1 94 7-116 2-99 (165)
136 COG1042 Acyl-CoA synthetase (N 86.9 0.92 2E-05 52.3 5.4 186 59-281 306-494 (598)
137 PLN02256 arogenate dehydrogena 86.7 3 6.5E-05 44.2 8.8 75 9-99 36-112 (304)
138 TIGR01745 asd_gamma aspartate- 86.7 3.5 7.6E-05 44.8 9.4 119 11-141 2-137 (366)
139 TIGR00465 ilvC ketol-acid redu 85.5 2.3 5E-05 45.3 7.2 94 9-117 3-99 (314)
140 COG0136 Asd Aspartate-semialde 84.7 4.9 0.00011 43.0 9.2 118 10-140 2-135 (334)
141 PRK06349 homoserine dehydrogen 84.0 4.8 0.00011 44.6 9.2 71 60-134 55-127 (426)
142 PRK00094 gpsA NAD(P)H-dependen 83.9 2.1 4.4E-05 45.0 6.1 63 62-128 58-122 (325)
143 cd07018 S49_SppA_67K_type Sign 83.8 1.6 3.5E-05 43.8 5.0 51 209-260 33-88 (222)
144 PRK12439 NAD(P)H-dependent gly 83.4 2.5 5.5E-05 45.3 6.5 51 63-117 65-117 (341)
145 PLN03139 formate dehydrogenase 83.3 8.1 0.00017 42.4 10.4 111 7-132 197-311 (386)
146 cd07022 S49_Sppa_36K_type Sign 83.1 2.7 5.8E-05 42.0 6.2 53 208-261 28-84 (214)
147 PRK06598 aspartate-semialdehyd 83.1 6.4 0.00014 42.9 9.4 117 11-140 3-137 (369)
148 PLN02591 tryptophan synthase 82.3 17 0.00037 37.4 11.8 40 91-132 94-133 (250)
149 PRK07574 formate dehydrogenase 82.3 6.4 0.00014 43.1 9.2 110 8-132 191-304 (385)
150 PLN02712 arogenate dehydrogena 81.2 5.3 0.00012 46.9 8.6 78 7-100 367-446 (667)
151 PLN02858 fructose-bisphosphate 81.1 6.8 0.00015 49.8 9.9 117 9-140 324-449 (1378)
152 TIGR03026 NDP-sugDHase nucleot 81.0 7 0.00015 43.0 9.1 102 10-123 1-131 (411)
153 TIGR01501 MthylAspMutase methy 81.0 11 0.00023 35.2 8.9 61 78-138 52-119 (134)
154 COG1810 Uncharacterized protei 80.5 22 0.00048 35.8 11.3 108 11-138 3-114 (224)
155 PRK11880 pyrroline-5-carboxyla 79.7 6.6 0.00014 40.2 7.9 96 10-117 3-100 (267)
156 TIGR03570 NeuD_NnaD sugar O-ac 79.5 12 0.00025 36.0 9.2 87 12-111 2-91 (201)
157 cd02072 Glm_B12_BD B12 binding 79.4 11 0.00024 34.8 8.3 61 78-138 50-117 (128)
158 PRK13243 glyoxylate reductase; 79.2 8.5 0.00018 41.3 8.7 109 7-132 148-260 (333)
159 PLN02858 fructose-bisphosphate 79.1 9.5 0.0002 48.5 10.3 111 9-134 4-122 (1378)
160 PRK15469 ghrA bifunctional gly 79.0 7.5 0.00016 41.3 8.2 107 8-132 135-246 (312)
161 COG0240 GpsA Glycerol-3-phosph 78.9 8.5 0.00018 41.2 8.4 109 9-128 1-122 (329)
162 PRK13111 trpA tryptophan synth 78.6 31 0.00068 35.7 12.3 73 64-138 75-153 (258)
163 TIGR00706 SppA_dom signal pept 78.1 5 0.00011 39.8 6.2 52 210-262 18-73 (207)
164 PRK07679 pyrroline-5-carboxyla 78.0 9 0.00019 39.7 8.3 101 10-120 4-108 (279)
165 PRK06476 pyrroline-5-carboxyla 77.6 7.2 0.00016 39.8 7.4 96 11-117 2-99 (258)
166 PRK06091 membrane protein FdrA 77.5 1.4E+02 0.0031 34.3 24.7 252 7-315 191-494 (555)
167 cd07023 S49_Sppa_N_C Signal pe 77.5 3.6 7.7E-05 40.8 4.9 53 209-262 21-78 (208)
168 COG0616 SppA Periplasmic serin 77.2 4.7 0.0001 43.0 6.0 80 169-264 60-142 (317)
169 PF05368 NmrA: NmrA-like famil 77.1 6.6 0.00014 39.0 6.8 117 12-137 1-143 (233)
170 PRK08655 prephenate dehydrogen 77.0 15 0.00031 41.0 10.0 110 10-135 1-114 (437)
171 PTZ00431 pyrroline carboxylate 76.9 13 0.00029 38.1 9.1 94 10-121 4-100 (260)
172 PRK08818 prephenate dehydrogen 76.9 18 0.00039 39.5 10.4 83 8-117 3-93 (370)
173 PRK06436 glycerate dehydrogena 76.9 11 0.00024 39.9 8.7 103 6-132 119-229 (303)
174 PRK11199 tyrA bifunctional cho 76.8 13 0.00028 40.4 9.4 84 10-122 99-185 (374)
175 cd07014 S49_SppA Signal peptid 76.8 4 8.7E-05 39.4 4.9 54 209-263 26-84 (177)
176 PRK06545 prephenate dehydrogen 76.6 9.1 0.0002 41.3 8.1 110 11-135 2-117 (359)
177 PLN02383 aspartate semialdehyd 76.5 16 0.00036 39.3 10.0 117 8-139 6-140 (344)
178 PTZ00345 glycerol-3-phosphate 76.1 13 0.00028 40.5 9.0 51 62-116 80-134 (365)
179 PRK12480 D-lactate dehydrogena 75.5 14 0.00031 39.5 9.2 109 7-135 144-257 (330)
180 PRK08605 D-lactate dehydrogena 75.0 12 0.00025 40.2 8.3 111 7-134 144-258 (332)
181 COG0372 GltA Citrate synthase 74.8 3 6.4E-05 45.7 3.7 110 347-462 20-139 (390)
182 TIGR03022 WbaP_sugtrans Undeca 74.6 14 0.00031 41.1 9.2 90 10-111 126-223 (456)
183 PF10727 Rossmann-like: Rossma 74.6 6.4 0.00014 36.3 5.4 106 10-132 11-121 (127)
184 PF10087 DUF2325: Uncharacteri 74.5 19 0.00041 31.2 8.1 38 78-115 48-87 (97)
185 TIGR01327 PGDH D-3-phosphoglyc 74.4 8.6 0.00019 43.9 7.5 112 7-134 136-251 (525)
186 PRK08507 prephenate dehydrogen 74.2 16 0.00035 37.7 9.0 76 11-101 2-80 (275)
187 cd07019 S49_SppA_1 Signal pept 74.2 6.3 0.00014 39.3 5.7 54 208-262 24-82 (211)
188 COG2185 Sbm Methylmalonyl-CoA 74.0 22 0.00048 33.5 8.7 57 78-138 63-124 (143)
189 PLN02712 arogenate dehydrogena 73.9 9.4 0.0002 44.9 7.8 77 8-100 51-129 (667)
190 PRK07417 arogenate dehydrogena 73.8 11 0.00024 39.1 7.6 93 10-118 1-97 (279)
191 TIGR03025 EPS_sugtrans exopoly 73.7 16 0.00034 40.6 9.2 89 9-109 125-221 (445)
192 KOG0409 Predicted dehydrogenas 73.6 14 0.0003 39.1 8.0 115 11-142 37-161 (327)
193 PLN02688 pyrroline-5-carboxyla 73.6 15 0.00033 37.5 8.5 96 10-117 1-101 (266)
194 PRK07502 cyclohexadienyl dehyd 73.4 12 0.00027 39.2 8.0 112 10-136 7-123 (307)
195 PF02826 2-Hacid_dh_C: D-isome 73.0 6.1 0.00013 38.2 5.1 108 5-132 32-147 (178)
196 PRK08410 2-hydroxyacid dehydro 72.2 14 0.00031 39.1 8.1 104 7-135 143-254 (311)
197 PF13460 NAD_binding_10: NADH( 71.7 12 0.00025 35.5 6.7 88 12-112 1-98 (183)
198 COG1086 Predicted nucleoside-d 71.3 2E+02 0.0043 33.2 16.9 201 11-256 117-330 (588)
199 TIGR02990 ectoine_eutA ectoine 70.9 46 0.00099 34.0 11.1 49 92-141 108-156 (239)
200 PF01210 NAD_Gly3P_dh_N: NAD-d 70.7 5.6 0.00012 37.6 4.2 73 62-138 56-135 (157)
201 PRK14619 NAD(P)H-dependent gly 70.3 18 0.0004 38.0 8.4 80 9-117 4-88 (308)
202 PRK12491 pyrroline-5-carboxyla 70.1 17 0.00036 37.8 7.9 99 11-120 4-106 (272)
203 PRK06928 pyrroline-5-carboxyla 70.0 12 0.00027 38.7 6.9 99 11-118 3-105 (277)
204 PRK00257 erythronate-4-phospha 70.0 16 0.00035 40.0 8.0 103 6-131 113-226 (381)
205 KOG2741 Dimeric dihydrodiol de 69.9 17 0.00037 39.0 7.9 70 62-134 57-127 (351)
206 PRK14806 bifunctional cyclohex 69.7 19 0.0004 42.8 9.2 111 10-134 4-119 (735)
207 PRK15204 undecaprenyl-phosphat 69.0 23 0.0005 39.9 9.3 89 10-111 147-242 (476)
208 COG3268 Uncharacterized conser 69.0 6.6 0.00014 42.0 4.5 122 9-142 6-135 (382)
209 PF13727 CoA_binding_3: CoA-bi 68.7 5.8 0.00013 37.1 3.9 77 22-108 92-173 (175)
210 TIGR02853 spore_dpaA dipicolin 68.0 66 0.0014 33.7 11.9 152 10-192 2-175 (287)
211 PRK00436 argC N-acetyl-gamma-g 67.9 19 0.00041 38.7 8.0 95 10-115 3-103 (343)
212 TIGR00705 SppA_67K signal pept 67.7 7.8 0.00017 44.8 5.3 81 166-263 306-391 (584)
213 PRK08306 dipicolinate synthase 67.6 71 0.0015 33.6 12.1 150 10-192 3-176 (296)
214 cd00394 Clp_protease_like Case 67.2 11 0.00024 35.4 5.5 50 210-262 16-69 (161)
215 COG0362 Gnd 6-phosphogluconate 65.3 29 0.00063 38.1 8.5 115 10-138 4-128 (473)
216 cd01391 Periplasmic_Binding_Pr 64.7 1.3E+02 0.0029 28.7 14.0 189 62-262 15-220 (269)
217 PRK02261 methylaspartate mutas 64.3 48 0.001 30.8 9.0 61 78-138 54-121 (137)
218 COG0111 SerA Phosphoglycerate 64.0 16 0.00035 39.1 6.4 108 7-132 140-253 (324)
219 TIGR03023 WcaJ_sugtrans Undeca 63.9 36 0.00078 37.8 9.5 88 10-109 129-224 (451)
220 COG0159 TrpA Tryptophan syntha 63.9 83 0.0018 32.8 11.3 136 64-245 80-225 (265)
221 PRK11790 D-3-phosphoglycerate 63.2 41 0.00089 37.2 9.6 107 7-132 149-259 (409)
222 cd00316 Oxidoreductase_nitroge 63.1 1.6E+02 0.0035 31.8 14.2 176 88-297 65-251 (399)
223 PRK10949 protease 4; Provision 62.3 12 0.00027 43.5 5.6 81 166-263 324-409 (618)
224 PRK15438 erythronate-4-phospha 62.0 31 0.00067 37.8 8.3 101 7-131 114-226 (378)
225 PRK13581 D-3-phosphoglycerate 61.8 26 0.00057 40.0 8.1 109 7-132 138-250 (526)
226 TIGR00705 SppA_67K signal pept 61.7 9.1 0.0002 44.3 4.4 53 209-262 80-138 (584)
227 cd06374 PBP1_mGluR_groupI Liga 60.5 1.4E+02 0.003 33.3 13.4 130 112-250 123-271 (472)
228 PRK10949 protease 4; Provision 60.4 11 0.00023 44.0 4.6 48 209-257 99-152 (618)
229 TIGR00640 acid_CoA_mut_C methy 60.2 35 0.00075 31.6 7.1 57 78-138 53-114 (132)
230 PRK11863 N-acetyl-gamma-glutam 59.8 29 0.00063 37.0 7.4 80 9-114 2-84 (313)
231 PRK15057 UDP-glucose 6-dehydro 59.7 28 0.0006 38.2 7.5 53 78-130 73-135 (388)
232 PF01113 DapB_N: Dihydrodipico 59.5 28 0.0006 31.6 6.3 88 169-263 2-104 (124)
233 PRK06728 aspartate-semialdehyd 58.3 42 0.0009 36.3 8.4 114 10-140 6-134 (347)
234 PRK14874 aspartate-semialdehyd 57.5 53 0.0012 35.1 9.1 81 11-104 3-88 (334)
235 PRK08300 acetaldehyde dehydrog 57.2 19 0.00042 38.1 5.5 94 8-112 3-102 (302)
236 PRK04207 glyceraldehyde-3-phos 56.6 40 0.00087 36.2 8.0 46 62-113 65-110 (341)
237 TIGR02853 spore_dpaA dipicolin 56.6 37 0.0008 35.6 7.5 118 7-146 149-272 (287)
238 TIGR03215 ac_ald_DH_ac acetald 56.1 23 0.0005 37.2 5.8 91 10-112 2-96 (285)
239 KOG2774 NAD dependent epimeras 55.7 2.4E+02 0.0051 29.2 12.5 145 61-231 94-257 (366)
240 COG0436 Aspartate/tyrosine/aro 55.4 66 0.0014 35.3 9.6 72 64-138 121-204 (393)
241 KOG2653 6-phosphogluconate deh 55.3 30 0.00065 37.4 6.4 121 9-139 6-132 (487)
242 COG0287 TyrA Prephenate dehydr 54.8 47 0.001 34.8 7.9 98 11-122 5-108 (279)
243 PF01118 Semialdhyde_dh: Semia 54.6 42 0.0009 30.1 6.6 92 12-114 2-100 (121)
244 KOG1203 Predicted dehydrogenas 54.5 26 0.00056 38.7 6.1 26 6-32 76-105 (411)
245 PRK05225 ketol-acid reductoiso 54.3 19 0.00041 40.3 5.0 95 6-116 33-135 (487)
246 PF07085 DRTGG: DRTGG domain; 53.9 24 0.00051 30.9 4.8 50 80-135 41-90 (105)
247 PLN02545 3-hydroxybutyryl-CoA 53.6 30 0.00066 36.0 6.3 40 78-117 83-125 (295)
248 COG1167 ARO8 Transcriptional r 53.5 51 0.0011 36.9 8.4 84 61-145 184-275 (459)
249 CHL00194 ycf39 Ycf39; Provisio 53.1 1.1E+02 0.0023 32.0 10.5 92 10-112 1-110 (317)
250 PRK15409 bifunctional glyoxyla 52.4 53 0.0012 35.0 8.0 110 7-132 143-256 (323)
251 PRK10124 putative UDP-glucose 52.2 64 0.0014 36.2 9.0 84 10-108 144-235 (463)
252 PF03807 F420_oxidored: NADP o 52.0 23 0.0005 29.9 4.3 76 11-99 1-81 (96)
253 TIGR01724 hmd_rel H2-forming N 51.9 83 0.0018 33.8 9.1 109 18-146 30-145 (341)
254 PRK15182 Vi polysaccharide bio 51.3 44 0.00096 37.1 7.4 26 7-32 4-30 (425)
255 TIGR01296 asd_B aspartate-semi 51.2 66 0.0014 34.6 8.6 26 78-104 61-86 (339)
256 cd01967 Nitrogenase_MoFe_alpha 50.8 1.9E+02 0.0042 31.4 12.4 172 91-297 74-258 (406)
257 PLN02928 oxidoreductase family 50.6 62 0.0013 34.9 8.3 114 7-132 157-282 (347)
258 PRK11064 wecC UDP-N-acetyl-D-m 50.6 45 0.00098 36.8 7.4 53 78-130 75-137 (415)
259 cd06267 PBP1_LacI_sugar_bindin 50.4 2E+02 0.0044 27.9 11.5 172 64-250 16-202 (264)
260 cd00419 Ferrochelatase_C Ferro 50.3 34 0.00075 31.7 5.4 48 92-139 79-134 (135)
261 COG1748 LYS9 Saccharopine dehy 50.3 81 0.0018 34.7 9.1 68 62-136 55-123 (389)
262 TIGR01851 argC_other N-acetyl- 49.6 59 0.0013 34.6 7.7 79 10-114 2-83 (310)
263 cd06375 PBP1_mGluR_groupII Lig 49.2 2E+02 0.0043 32.0 12.3 133 113-254 112-262 (458)
264 PRK06932 glycerate dehydrogena 48.9 60 0.0013 34.5 7.7 101 8-132 146-253 (314)
265 CHL00200 trpA tryptophan synth 48.5 1.8E+02 0.004 30.1 11.0 71 64-138 78-155 (263)
266 TIGR00216 ispH_lytB (E)-4-hydr 48.4 3.3E+02 0.0071 28.6 12.9 171 61-247 51-233 (280)
267 cd02071 MM_CoA_mut_B12_BD meth 48.1 73 0.0016 28.7 7.1 70 64-138 38-111 (122)
268 PF08659 KR: KR domain; Inter 48.1 1.2E+02 0.0027 28.9 9.2 88 170-262 3-93 (181)
269 cd01971 Nitrogenase_VnfN_like 47.9 2.1E+02 0.0047 31.6 12.2 155 88-256 71-237 (427)
270 TIGR03649 ergot_EASG ergot alk 47.7 1.1E+02 0.0024 31.2 9.4 34 79-112 68-105 (285)
271 PF00290 Trp_syntA: Tryptophan 47.6 55 0.0012 34.0 6.9 67 65-133 74-143 (259)
272 COG3804 Uncharacterized conser 46.6 1E+02 0.0022 32.6 8.4 108 20-136 14-130 (350)
273 cd06300 PBP1_ABC_sugar_binding 46.5 3.1E+02 0.0066 27.2 12.9 149 93-252 50-211 (272)
274 PF03447 NAD_binding_3: Homose 46.5 18 0.00039 32.1 2.9 73 60-134 42-115 (117)
275 KOG1502 Flavonol reductase/cin 46.2 80 0.0017 33.9 8.0 242 10-308 6-314 (327)
276 PRK05671 aspartate-semialdehyd 46.1 70 0.0015 34.4 7.7 94 9-115 4-101 (336)
277 TIGR01850 argC N-acetyl-gamma- 45.9 66 0.0014 34.6 7.6 36 78-115 68-103 (346)
278 PRK09260 3-hydroxybutyryl-CoA 45.5 23 0.0005 36.8 3.9 52 63-117 69-123 (288)
279 cd01065 NAD_bind_Shikimate_DH 44.5 17 0.00036 33.6 2.4 112 7-135 17-137 (155)
280 cd06367 PBP1_iGluR_NMDA N-term 44.4 4.1E+02 0.0088 28.0 13.5 125 119-252 79-222 (362)
281 PRK12921 2-dehydropantoate 2-r 44.2 59 0.0013 33.7 6.7 46 66-115 59-106 (305)
282 PF09350 DUF1992: Domain of un 44.1 1.2E+02 0.0026 25.0 7.1 57 469-526 2-64 (71)
283 COG1023 Gnd Predicted 6-phosph 43.9 1.2E+02 0.0026 31.4 8.4 115 11-138 2-120 (300)
284 cd06362 PBP1_mGluR Ligand bind 43.7 2.7E+02 0.0059 30.5 12.3 123 118-249 115-255 (452)
285 cd06278 PBP1_LacI_like_2 Ligan 43.5 3.3E+02 0.0071 26.7 12.1 168 65-247 17-196 (266)
286 PF01094 ANF_receptor: Recepto 43.5 3.5E+02 0.0077 27.7 12.5 148 102-260 50-216 (348)
287 PRK05579 bifunctional phosphop 43.4 2.5E+02 0.0054 31.0 11.6 210 22-263 25-280 (399)
288 PRK08462 biotin carboxylase; V 43.1 1.6E+02 0.0034 32.6 10.3 52 92-146 65-117 (445)
289 COG0345 ProC Pyrroline-5-carbo 42.7 82 0.0018 32.8 7.3 101 10-122 2-106 (266)
290 TIGR00978 asd_EA aspartate-sem 42.0 1.3E+02 0.0029 32.1 9.2 36 78-115 73-108 (341)
291 PRK06270 homoserine dehydrogen 41.7 69 0.0015 34.4 6.9 150 67-247 79-234 (341)
292 PRK08293 3-hydroxybutyryl-CoA 41.6 1.2E+02 0.0027 31.4 8.6 52 62-116 71-125 (287)
293 PF00072 Response_reg: Respons 41.4 1.6E+02 0.0034 24.8 8.0 76 172-257 3-78 (112)
294 PRK06487 glycerate dehydrogena 41.3 1E+02 0.0022 32.7 8.1 101 7-132 146-253 (317)
295 TIGR03376 glycerol3P_DH glycer 41.3 57 0.0012 35.2 6.2 51 63-117 70-122 (342)
296 KOG1447 GTP-specific succinyl- 40.9 56 0.0012 34.0 5.6 96 166-262 281-380 (412)
297 TIGR03013 EpsB_2 sugar transfe 40.5 90 0.0019 34.7 7.8 49 59-108 165-218 (442)
298 TIGR02326 transamin_PhnW 2-ami 40.4 2.4E+02 0.0053 29.8 10.9 85 166-255 76-164 (363)
299 PF13407 Peripla_BP_4: Peripla 40.3 1.4E+02 0.003 29.6 8.5 49 199-253 162-211 (257)
300 PF02844 GARS_N: Phosphoribosy 40.2 47 0.001 29.4 4.3 43 92-138 51-94 (100)
301 PRK06023 enoyl-CoA hydratase; 39.8 48 0.001 33.8 5.1 16 249-264 96-111 (251)
302 PLN03085 nucleobase:cation sym 39.5 1.5E+02 0.0033 29.8 8.2 59 469-527 93-155 (221)
303 PRK13957 indole-3-glycerol-pho 39.5 55 0.0012 33.7 5.4 91 94-188 116-221 (247)
304 TIGR03301 PhnW-AepZ 2-aminoeth 38.8 2.7E+02 0.0058 29.0 10.8 85 166-255 72-160 (355)
305 cd03466 Nitrogenase_NifN_2 Nit 38.7 2.8E+02 0.006 30.7 11.3 158 87-256 68-252 (429)
306 PTZ00433 tyrosine aminotransfe 38.5 1.8E+02 0.004 31.6 9.8 71 64-136 136-216 (412)
307 PF00158 Sigma54_activat: Sigm 38.4 21 0.00046 34.3 2.1 100 224-328 23-127 (168)
308 PRK12483 threonine dehydratase 38.4 4.8E+02 0.01 29.9 13.2 195 83-315 88-286 (521)
309 PRK07531 bifunctional 3-hydrox 38.2 99 0.0021 35.0 7.8 96 10-117 5-122 (495)
310 PF10609 ParA: ParA/MinD ATPas 38.2 53 0.0011 28.0 4.2 55 80-135 2-58 (81)
311 PF03435 Saccharop_dh: Sacchar 38.1 45 0.00097 36.1 4.9 65 63-134 55-119 (386)
312 cd01481 vWA_collagen_alpha3-VI 37.7 2E+02 0.0043 27.3 8.7 101 22-135 24-138 (165)
313 PF07755 DUF1611: Protein of u 37.6 22 0.00047 37.7 2.2 130 52-203 10-152 (301)
314 PRK12557 H(2)-dependent methyl 37.6 1.9E+02 0.0041 31.2 9.4 63 61-126 67-131 (342)
315 PRK05808 3-hydroxybutyryl-CoA 37.5 90 0.002 32.2 6.8 51 62-117 70-124 (282)
316 TIGR00112 proC pyrroline-5-car 36.6 90 0.002 31.7 6.5 53 63-119 31-85 (245)
317 COG0075 Serine-pyruvate aminot 36.3 1.2E+02 0.0026 33.3 7.7 79 165-246 77-159 (383)
318 PRK12435 ferrochelatase; Provi 36.3 65 0.0014 34.3 5.6 48 92-139 234-289 (311)
319 PRK06129 3-hydroxyacyl-CoA deh 36.3 51 0.0011 34.6 4.8 44 64-110 71-115 (308)
320 PF02153 PDH: Prephenate dehyd 36.1 65 0.0014 33.0 5.4 55 78-134 45-100 (258)
321 PF10100 DUF2338: Uncharacteri 35.7 87 0.0019 34.6 6.4 51 63-117 71-124 (429)
322 TIGR01915 npdG NADPH-dependent 35.6 1.3E+02 0.0028 29.9 7.3 43 68-115 61-105 (219)
323 PRK08306 dipicolinate synthase 35.6 1.1E+02 0.0023 32.2 7.1 114 7-142 150-269 (296)
324 cd01966 Nitrogenase_NifN_1 Nit 35.5 3.3E+02 0.0072 30.1 11.2 159 84-256 62-252 (417)
325 PRK00087 4-hydroxy-3-methylbut 35.4 8E+02 0.017 28.8 17.1 173 60-247 51-231 (647)
326 KOG3111 D-ribulose-5-phosphate 35.3 2E+02 0.0043 28.7 8.1 109 181-314 102-217 (224)
327 PRK10203 hypothetical protein; 35.2 2E+02 0.0044 26.4 7.8 58 469-526 8-69 (122)
328 cd01965 Nitrogenase_MoFe_beta_ 35.2 3.2E+02 0.0069 30.2 11.1 160 89-256 67-251 (428)
329 TIGR00262 trpA tryptophan synt 34.9 5.2E+02 0.011 26.6 12.6 67 64-132 73-142 (256)
330 PRK09076 enoyl-CoA hydratase; 34.9 78 0.0017 32.4 5.8 54 210-264 34-109 (258)
331 PRK07530 3-hydroxybutyryl-CoA 34.8 47 0.001 34.5 4.2 50 64-117 73-125 (292)
332 cd01537 PBP1_Repressors_Sugar_ 34.3 4.3E+02 0.0094 25.4 12.7 176 65-249 17-202 (264)
333 TIGR00069 hisD histidinol dehy 34.3 5.2E+02 0.011 28.5 12.1 72 210-315 219-292 (393)
334 PLN02695 GDP-D-mannose-3',5'-e 34.2 4.5E+02 0.0099 28.2 11.9 21 93-113 118-138 (370)
335 PF02646 RmuC: RmuC family; I 34.2 38 0.00083 35.8 3.4 53 64-140 164-216 (304)
336 cd01972 Nitrogenase_VnfE_like 34.0 4.2E+02 0.0092 29.2 11.8 177 88-297 74-265 (426)
337 PRK02910 light-independent pro 34.0 2.5E+02 0.0054 32.1 10.2 40 103-142 85-126 (519)
338 cd06379 PBP1_iGluR_NMDA_NR1 N- 33.8 6E+02 0.013 27.0 12.8 120 119-249 98-238 (377)
339 COG0134 TrpC Indole-3-glycerol 33.7 31 0.00066 35.7 2.5 93 96-192 122-230 (254)
340 PRK06494 enoyl-CoA hydratase; 33.7 76 0.0017 32.5 5.5 54 210-264 36-108 (259)
341 PRK10820 DNA-binding transcrip 33.4 90 0.002 35.6 6.5 129 190-328 199-332 (520)
342 cd06363 PBP1_Taste_receptor Li 33.3 5.2E+02 0.011 28.0 12.3 136 111-256 112-266 (410)
343 PRK12447 histidinol dehydrogen 33.2 5E+02 0.011 29.0 11.8 73 209-315 244-318 (426)
344 PRK13770 histidinol dehydrogen 33.1 6.2E+02 0.014 28.2 12.5 72 210-315 240-313 (416)
345 PLN02968 Probable N-acetyl-gam 33.1 1.2E+02 0.0025 33.3 7.0 35 78-115 104-138 (381)
346 TIGR02974 phageshock_pspF psp 32.5 57 0.0012 34.8 4.5 100 224-328 23-127 (329)
347 COG2204 AtoC Response regulato 32.4 30 0.00066 38.8 2.4 102 226-332 167-273 (464)
348 COG1609 PurR Transcriptional r 32.4 3.4E+02 0.0073 28.8 10.4 112 113-256 26-143 (333)
349 cd07020 Clp_protease_NfeD_1 No 32.2 1.2E+02 0.0025 29.6 6.3 50 210-262 18-73 (187)
350 cd07021 Clp_protease_NfeD_like 32.2 1.2E+02 0.0026 29.5 6.2 50 211-263 19-71 (178)
351 COG1064 AdhP Zn-dependent alco 31.9 1.9E+02 0.0041 31.3 8.2 87 6-103 163-253 (339)
352 PRK00048 dihydrodipicolinate r 31.8 3.2E+02 0.007 27.9 9.7 120 169-316 3-130 (257)
353 PRK08040 putative semialdehyde 31.7 1.3E+02 0.0029 32.4 7.0 95 8-114 3-100 (336)
354 COG4693 PchG Oxidoreductase (N 31.5 24 0.00051 37.0 1.2 69 59-133 47-119 (361)
355 PRK06130 3-hydroxybutyryl-CoA 31.4 68 0.0015 33.6 4.8 48 65-115 69-119 (311)
356 COG2099 CobK Precorrin-6x redu 31.3 3.1E+02 0.0067 28.5 9.2 116 10-133 3-131 (257)
357 PRK06186 hypothetical protein; 31.0 72 0.0016 32.5 4.6 72 63-141 14-92 (229)
358 COG2910 Putative NADH-flavin r 30.9 2.2E+02 0.0048 28.3 7.7 93 10-111 1-104 (211)
359 PF02844 GARS_N: Phosphoribosy 30.8 54 0.0012 29.0 3.3 39 66-106 51-89 (100)
360 PF14871 GHL6: Hypothetical gl 30.7 89 0.0019 28.9 4.9 48 93-140 3-67 (132)
361 PRK14620 NAD(P)H-dependent gly 30.6 95 0.0021 32.8 5.8 52 62-116 57-111 (326)
362 PRK09427 bifunctional indole-3 30.6 1.3E+02 0.0027 33.9 6.9 136 94-246 124-276 (454)
363 cd06273 PBP1_GntR_like_1 This 30.4 5.3E+02 0.012 25.3 13.9 173 65-252 17-205 (268)
364 PRK05809 3-hydroxybutyryl-CoA 30.4 93 0.002 31.8 5.5 54 210-264 36-111 (260)
365 cd04724 Tryptophan_synthase_al 30.3 5.9E+02 0.013 25.8 12.6 44 93-138 94-140 (242)
366 PRK13355 bifunctional HTH-doma 30.2 2.9E+02 0.0063 31.2 9.9 47 92-139 271-323 (517)
367 cd01973 Nitrogenase_VFe_beta_l 30.1 4.9E+02 0.011 29.2 11.5 163 83-255 66-255 (454)
368 PRK07681 aspartate aminotransf 30.1 3.4E+02 0.0073 29.3 10.1 70 63-134 124-203 (399)
369 PLN02460 indole-3-glycerol-pho 30.1 64 0.0014 34.8 4.3 93 97-191 197-310 (338)
370 PRK06072 enoyl-CoA hydratase; 29.7 88 0.0019 31.8 5.1 53 210-263 32-102 (248)
371 KOG3505 Mitochondrial/chloropl 29.6 59 0.0013 25.2 2.8 42 183-231 10-51 (55)
372 PRK00877 hisD bifunctional his 29.6 4.4E+02 0.0095 29.4 10.6 72 210-315 250-323 (425)
373 PRK07550 hypothetical protein; 29.6 4E+02 0.0087 28.5 10.5 76 63-140 121-206 (386)
374 PF13684 Dak1_2: Dihydroxyacet 29.6 3E+02 0.0064 29.3 9.2 77 190-273 113-189 (313)
375 PF00289 CPSase_L_chain: Carba 29.3 59 0.0013 29.1 3.3 45 91-138 62-107 (110)
376 PLN03209 translocon at the inn 29.1 2.7E+02 0.0058 32.4 9.3 35 78-112 159-208 (576)
377 COG1052 LdhA Lactate dehydroge 29.0 2.4E+02 0.0053 30.2 8.5 112 7-135 144-259 (324)
378 PRK08664 aspartate-semialdehyd 28.8 1.7E+02 0.0038 31.4 7.5 36 78-115 76-111 (349)
379 cd01974 Nitrogenase_MoFe_beta 28.7 4.3E+02 0.0093 29.3 10.7 162 87-256 69-255 (435)
380 smart00481 POLIIIAc DNA polyme 28.7 1.2E+02 0.0026 23.9 4.7 41 92-133 17-57 (67)
381 PRK06207 aspartate aminotransf 28.6 2.9E+02 0.0064 30.0 9.3 45 93-138 169-219 (405)
382 PRK13602 putative ribosomal pr 28.5 1.7E+02 0.0036 24.7 5.8 40 93-133 17-56 (82)
383 PRK11303 DNA-binding transcrip 28.5 4.2E+02 0.0091 27.3 10.2 113 113-256 29-147 (328)
384 PRK12360 4-hydroxy-3-methylbut 28.4 1.1E+02 0.0024 32.1 5.6 119 61-189 53-181 (281)
385 TIGR00237 xseA exodeoxyribonuc 28.3 5.7E+02 0.012 28.4 11.6 87 166-256 128-225 (432)
386 PTZ00377 alanine aminotransfer 27.7 3E+02 0.0064 30.8 9.4 35 103-137 218-258 (481)
387 cd06558 crotonase-like Crotona 27.7 1.2E+02 0.0025 29.1 5.4 16 249-264 92-107 (195)
388 PRK09265 aminotransferase AlaT 27.7 4.9E+02 0.011 28.1 10.9 44 93-137 159-208 (404)
389 COG2185 Sbm Methylmalonyl-CoA 27.6 1.8E+02 0.0038 27.6 6.2 49 83-131 43-92 (143)
390 cd06270 PBP1_GalS_like Ligand 27.5 6.1E+02 0.013 25.0 14.7 169 69-252 21-204 (268)
391 PF00218 IGPS: Indole-3-glycer 27.2 74 0.0016 32.9 4.0 94 94-191 123-231 (254)
392 PRK15481 transcriptional regul 27.1 3.5E+02 0.0076 29.6 9.7 70 63-134 172-250 (431)
393 PF03709 OKR_DC_1_N: Orn/Lys/A 27.1 1.8E+02 0.0039 25.9 6.1 72 178-260 4-77 (115)
394 PLN02231 alanine transaminase 26.9 3.5E+02 0.0076 31.0 9.8 34 103-136 271-310 (534)
395 COG1570 XseA Exonuclease VII, 26.8 2.3E+02 0.0051 31.6 7.9 85 166-256 134-231 (440)
396 PRK05674 gamma-carboxygeranoyl 26.7 1.1E+02 0.0024 31.4 5.3 16 249-264 100-115 (265)
397 PRK05995 enoyl-CoA hydratase; 26.6 1.1E+02 0.0024 31.3 5.3 16 249-264 98-113 (262)
398 PLN02550 threonine dehydratase 26.6 3.6E+02 0.0079 31.4 9.8 212 65-315 144-358 (591)
399 PRK03767 NAD(P)H:quinone oxido 26.6 4.6E+02 0.01 25.5 9.5 72 69-144 64-153 (200)
400 PLN02926 histidinol dehydrogen 26.5 7.2E+02 0.016 27.8 11.6 74 208-315 252-326 (431)
401 COG1184 GCD2 Translation initi 26.5 3.1E+02 0.0068 29.1 8.5 100 83-196 123-226 (301)
402 COG1024 CaiD Enoyl-CoA hydrata 26.0 1.2E+02 0.0026 30.9 5.4 53 210-264 37-112 (257)
403 cd01981 Pchlide_reductase_B Pc 26.0 4.8E+02 0.01 28.7 10.5 150 92-256 74-243 (430)
404 PLN02600 enoyl-CoA hydratase 25.9 1.4E+02 0.003 30.4 5.8 16 249-264 87-102 (251)
405 cd00411 Asparaginase Asparagin 25.8 1.9E+02 0.004 30.9 6.9 83 207-310 220-304 (323)
406 cd07013 S14_ClpP Caseinolytic 25.6 1.7E+02 0.0036 27.9 5.9 51 210-262 17-70 (162)
407 TIGR03189 dienoyl_CoA_hyt cycl 25.6 1.1E+02 0.0024 31.3 5.0 53 210-263 32-102 (251)
408 PRK13479 2-aminoethylphosphona 25.5 5.4E+02 0.012 27.2 10.5 85 166-255 78-166 (368)
409 PRK08229 2-dehydropantoate 2-r 25.1 1.1E+02 0.0024 32.4 5.0 38 78-116 73-112 (341)
410 PRK11382 frlB fructoselysine-6 25.1 3.4E+02 0.0074 29.0 8.8 102 92-214 32-137 (340)
411 PRK13802 bifunctional indole-3 25.0 1.2E+02 0.0026 36.0 5.6 92 94-191 125-233 (695)
412 cd06338 PBP1_ABC_ligand_bindin 24.9 7.8E+02 0.017 25.4 15.6 152 94-259 62-231 (345)
413 PRK06143 enoyl-CoA hydratase; 24.9 1.6E+02 0.0035 30.1 6.1 54 210-264 39-114 (256)
414 PRK05869 enoyl-CoA hydratase; 24.7 1.1E+02 0.0023 30.7 4.7 16 249-264 98-113 (222)
415 PRK05864 enoyl-CoA hydratase; 24.6 1.1E+02 0.0023 31.7 4.8 16 249-264 108-123 (276)
416 PLN02306 hydroxypyruvate reduc 24.6 3.3E+02 0.0071 29.9 8.7 61 66-132 227-292 (386)
417 COG1087 GalE UDP-glucose 4-epi 24.5 5.6E+02 0.012 27.5 9.8 250 10-315 1-322 (329)
418 PRK08960 hypothetical protein; 24.4 4.5E+02 0.0097 28.2 9.7 69 64-134 124-202 (387)
419 cd06323 PBP1_ribose_binding Pe 24.2 6.8E+02 0.015 24.4 13.3 73 63-138 15-88 (268)
420 COG0800 Eda 2-keto-3-deoxy-6-p 24.2 2.4E+02 0.0051 28.5 6.8 100 10-146 14-118 (211)
421 PLN02368 alanine transaminase 24.1 4.6E+02 0.0099 28.8 9.8 75 63-140 162-253 (407)
422 PRK11096 ansB L-asparaginase I 24.1 4.1E+02 0.0089 28.8 9.2 102 205-312 241-346 (347)
423 cd07034 TPP_PYR_PFOR_IOR-alpha 24.1 5.7E+02 0.012 23.6 9.7 145 93-257 3-158 (160)
424 PRK05568 flavodoxin; Provision 24.0 2.9E+02 0.0063 25.0 7.1 58 79-136 49-116 (142)
425 PRK05862 enoyl-CoA hydratase; 23.9 1.3E+02 0.0028 30.7 5.1 54 210-264 36-108 (257)
426 cd06371 PBP1_sensory_GC_DEF_li 23.8 9.2E+02 0.02 25.8 16.0 128 112-249 72-218 (382)
427 TIGR01481 ccpA catabolite cont 23.8 6.4E+02 0.014 25.9 10.5 113 112-256 26-144 (329)
428 PRK04296 thymidine kinase; Pro 23.6 2.4E+02 0.0052 27.4 6.8 49 225-275 4-54 (190)
429 PRK05870 enoyl-CoA hydratase; 23.6 1.2E+02 0.0025 30.9 4.7 16 249-264 94-109 (249)
430 PRK06144 enoyl-CoA hydratase; 23.5 1.4E+02 0.003 30.6 5.3 54 210-264 40-116 (262)
431 PRK08912 hypothetical protein; 23.2 6E+02 0.013 27.1 10.5 69 64-134 119-196 (387)
432 cd03074 PDI_b'_Calsequestrin_C 23.1 1.2E+02 0.0025 27.4 3.9 42 207-248 5-46 (120)
433 PRK08068 transaminase; Reviewe 23.1 4.9E+02 0.011 27.9 9.8 70 63-134 125-204 (389)
434 TIGR00109 hemH ferrochelatase. 23.0 1.4E+02 0.0031 31.8 5.4 48 92-139 248-303 (322)
435 cd06335 PBP1_ABC_ligand_bindin 22.9 8.8E+02 0.019 25.3 12.8 152 93-254 57-223 (347)
436 TIGR02279 PaaC-3OHAcCoADH 3-hy 22.8 1.3E+02 0.0028 34.2 5.3 99 6-117 2-126 (503)
437 PRK05443 polyphosphate kinase; 22.7 1.9E+02 0.0042 34.3 6.8 80 210-307 353-433 (691)
438 TIGR02533 type_II_gspE general 22.6 6E+02 0.013 28.8 10.5 49 199-254 291-340 (486)
439 PRK06688 enoyl-CoA hydratase; 22.5 1.4E+02 0.003 30.5 5.0 16 249-264 95-110 (259)
440 PF07152 YaeQ: YaeQ protein; 22.4 63 0.0014 31.5 2.3 58 189-260 52-109 (174)
441 TIGR00036 dapB dihydrodipicoli 22.4 8.6E+02 0.019 25.0 12.2 115 169-311 3-135 (266)
442 PLN00141 Tic62-NAD(P)-related 22.3 4E+02 0.0087 26.5 8.4 25 7-32 15-43 (251)
443 PF04914 DltD_C: DltD C-termin 22.3 1.7E+02 0.0037 27.1 5.1 44 91-134 37-93 (130)
444 PF06230 DUF1009: Protein of u 22.2 94 0.002 31.3 3.6 43 93-135 172-214 (214)
445 PRK07511 enoyl-CoA hydratase; 22.1 1.4E+02 0.0031 30.4 5.1 16 249-264 97-112 (260)
446 TIGR00519 asnASE_I L-asparagin 22.1 3.4E+02 0.0073 29.2 8.1 86 205-314 220-311 (336)
447 PRK09461 ansA cytoplasmic aspa 22.1 2.8E+02 0.0061 29.8 7.4 75 211-305 223-302 (335)
448 COG0299 PurN Folate-dependent 22.0 1E+02 0.0023 30.6 3.7 47 93-139 40-97 (200)
449 PLN00016 RNA-binding protein; 22.0 2.8E+02 0.006 29.8 7.5 24 9-32 52-82 (378)
450 PRK08361 aspartate aminotransf 21.9 5.6E+02 0.012 27.4 9.9 69 64-134 125-203 (391)
451 PLN00143 tyrosine/nicotianamin 21.9 5.5E+02 0.012 27.9 9.9 71 63-135 128-208 (409)
452 PRK05980 enoyl-CoA hydratase; 21.8 1.8E+02 0.0038 29.7 5.7 16 249-264 99-114 (260)
453 PRK14987 gluconate operon tran 21.8 8.6E+02 0.019 25.0 11.0 113 112-256 30-148 (331)
454 PRK05957 aspartate aminotransf 21.8 3.2E+02 0.007 29.4 8.0 69 64-134 121-197 (389)
455 PRK01045 ispH 4-hydroxy-3-meth 21.7 1.6E+02 0.0034 31.3 5.3 106 62-175 53-163 (298)
456 PF07287 DUF1446: Protein of u 21.7 1.6E+02 0.0035 32.1 5.5 40 92-132 60-100 (362)
457 PRK07938 enoyl-CoA hydratase; 21.7 1.5E+02 0.0032 30.3 5.0 16 249-264 93-108 (249)
458 PRK13601 putative L7Ae-like ri 21.5 2.6E+02 0.0057 23.7 5.6 44 93-137 14-57 (82)
459 PF12146 Hydrolase_4: Putative 21.5 1.7E+02 0.0037 24.3 4.5 38 104-141 15-54 (79)
460 cd03110 Fer4_NifH_child This p 21.5 2.7E+02 0.0057 26.3 6.5 50 79-131 93-144 (179)
461 cd07373 2A5CPDO_A The alpha su 21.5 9.1E+02 0.02 24.9 14.7 132 175-315 88-226 (271)
462 PF07905 PucR: Purine cataboli 21.5 1.2E+02 0.0027 27.3 3.9 43 92-134 61-103 (123)
463 PF00710 Asparaginase: Asparag 21.4 2.9E+02 0.0063 29.3 7.4 80 212-311 216-297 (313)
464 cd01968 Nitrogenase_NifE_I Nit 21.2 7.5E+02 0.016 27.1 10.8 150 91-255 73-234 (410)
465 TIGR01278 DPOR_BchB light-inde 21.1 7.5E+02 0.016 28.1 11.0 46 98-143 80-128 (511)
466 PRK01018 50S ribosomal protein 21.0 2.7E+02 0.0059 24.3 5.8 40 93-133 22-61 (99)
467 TIGR03538 DapC_gpp succinyldia 20.8 5.4E+02 0.012 27.6 9.5 45 93-138 156-206 (393)
468 PRK00402 3-isopropylmalate deh 20.8 3.5E+02 0.0075 30.2 7.9 35 107-142 59-101 (418)
469 PRK11475 DNA-binding transcrip 20.7 8.1E+02 0.017 24.2 10.0 83 209-315 25-114 (207)
470 PRK08138 enoyl-CoA hydratase; 20.7 1.6E+02 0.0035 30.1 5.1 54 210-264 40-112 (261)
471 PF04422 FrhB_FdhB_N: Coenzyme 20.6 78 0.0017 26.7 2.3 31 170-201 13-43 (82)
472 PRK09674 enoyl-CoA hydratase-i 20.5 2E+02 0.0043 29.3 5.7 54 210-264 34-106 (255)
473 PRK07324 transaminase; Validat 20.4 3.9E+02 0.0086 28.6 8.3 73 62-136 110-192 (373)
474 cd06572 Histidinol_dh Histidin 20.3 8.7E+02 0.019 26.8 10.7 73 210-315 223-296 (390)
475 COG1171 IlvA Threonine dehydra 20.3 1.1E+03 0.024 25.6 16.8 209 65-315 60-276 (347)
476 PRK06495 enoyl-CoA hydratase; 20.3 1.5E+02 0.0034 30.2 4.9 16 249-264 96-111 (257)
477 TIGR03210 badI 2-ketocyclohexa 20.2 2.1E+02 0.0045 29.3 5.8 16 249-264 93-108 (256)
478 cd00757 ThiF_MoeB_HesA_family 20.2 6.2E+02 0.013 25.2 9.1 36 103-140 111-146 (228)
479 cd06298 PBP1_CcpA_like Ligand- 20.1 8.2E+02 0.018 23.9 11.6 169 66-250 18-202 (268)
480 cd07362 HPCD_like Class III ex 20.1 9.7E+02 0.021 24.7 14.0 140 176-322 91-237 (272)
481 TIGR02153 gatD_arch glutamyl-t 20.0 3.8E+02 0.0083 29.7 8.0 86 205-314 284-375 (404)
No 1
>PLN02522 ATP citrate (pro-S)-lyase
Probab=100.00 E-value=8.2e-136 Score=1129.62 Aligned_cols=608 Identities=93% Similarity=1.429 Sum_probs=577.9
Q ss_pred CccCCCCCCCcEEEEEcCCchHHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCcc
Q 007327 1 MATGQLFSKTTQALFYNYKQLPIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMAD 80 (608)
Q Consensus 1 ~~~~~l~~p~s~avv~g~~~~~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vD 80 (608)
|++..||+.++.++|+|...+.+|.|++|+|.|+|.+..|+++.||+.++++++|||+++.|+|+|+|++|+..++|++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iPVf~tv~eA~~~~~~~~ 80 (608)
T PLN02522 1 MATGQLFSRTTQALFYNYKQLPVQRMLDFDFLCGRETPSVAGIINPGSEGFQKLFFGQEEIAIPVHGSIEAACKAHPTAD 80 (608)
T ss_pred CcceeeecCCceeEEEcCcHHHHHhhhccceeccCCCCeeEEEEcCCCCcceeEecCCEeeCccccchHHHHHHhCCCCc
Confidence 78999999999999999999999999999999999999999999997777999999999999999999999998887799
Q ss_pred EEEEeccChhcHHHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCeEEcCCcccccccCcccccccCCcccccc
Q 007327 81 VFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNII 160 (608)
Q Consensus 81 lavi~vp~~~~~~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~rvlGPNc~Gi~~~~~~~l~~~~~~~~~~~ 160 (608)
..||+||+.++.++++|+|.++|||.+||+|+||+|.+|++|+++||++|+||+||||+|++||..+++|.+..++.+.+
T Consensus 81 ~~vifvp~~~a~da~lEa~~a~GIk~~VIiteGfpe~d~~~l~~~Ar~~g~rlIGPNc~Gii~p~~~kig~~~~~~~~~~ 160 (608)
T PLN02522 81 VFINFASFRSAAASSMEALKQPTIRVVAIIAEGVPESDTKQLIAYARANNKVVIGPATVGGIQAGAFKIGDTAGTLDNII 160 (608)
T ss_pred EEEEeCChHHhHHHHHHHHhhCCCCEEEEECCCCChhhHHHHHHHHHHcCCEEECCCCCeeEccCccccccccccccccc
Confidence 99999999999999999999899999999999999999999999999999999999999999999877753222233334
Q ss_pred cccCCCCCcEEEEecChhHHHHHHHHHHhcCCceeEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCccHHHH
Q 007327 161 HCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSL 240 (608)
Q Consensus 161 p~~~~~~G~valvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~T~~I~ly~E~g~~~~~~f 240 (608)
++..++||+||+|||||++++++++++.++|+|||++||+||+.++|+++.|+|+||.+||+||+|++|+|||++++++|
T Consensus 161 ~~~~~~pG~VgiVSqSGtL~~ei~~~~~~~GlG~S~~VsiGnd~~~g~~~~D~L~~~~~Dp~Tk~IvlygEiGg~~e~~f 240 (608)
T PLN02522 161 QCKLYRPGSVGFVSKSGGMSNEMYNVIARVTDGIYEGIAIGGDVFPGSTLSDHVLRFNNIPQIKMIVVLGELGGRDEYSL 240 (608)
T ss_pred CcCCCCCCcEEEEeccHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEEEEecCchhHHHH
Confidence 43446899999999999999999999999999999999999999777999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCEEEEEeCCCccCcccccccCCCCCcCCCCcchHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHHHHhc
Q 007327 241 VEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEKLVEE 320 (608)
Q Consensus 241 ~~~~r~a~~~KPVvvlk~Grs~~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaGvi~v~~~~el~~~~~~~~~~~~~~ 320 (608)
++++++++++||||++|+|||+.+.|+++++|||||++|++.+++++|+++|||+|+++++|++||+++++..+++|..+
T Consensus 241 ~ea~~~a~~~KPVVa~kaGrsa~~~~~~aa~gHtGAiag~~~~ta~~k~aAlr~aGv~vv~s~~El~~~~~~~~~~~~~~ 320 (608)
T PLN02522 241 VEALKQGKVSKPVVAWVSGTCARLFKSEVQFGHAGAKSGGDMESAQAKNKALKDAGAIVPTSFEALEAAIKETFEKLVEE 320 (608)
T ss_pred HHHHHHhcCCCCEEEEeccCCCccCccccccccccccccCCCccHHHHHHHHHHCCCeEeCCHHHHHHHHHHHHHHHHhC
Confidence 99999988999999999999995434889999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCchhhhHHHHhcccCCcchhhhheeccCCCCcccCCCCCCcccccCCcHHHHHHHhhcCCCCChhHH
Q 007327 321 GKIPPVKEVTPPQIPEDLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCT 400 (608)
Q Consensus 321 G~~~~~~~~~~p~~~~~~~~~rllA~~p~i~A~~t~I~~~~g~~i~~~g~dl~~li~~~~~~~~~l~~l~~~~~~~~~~~ 400 (608)
|.+.|.++..+|+.|+|+++.+.++++...+.|+|+||+.+++++.+||++++|+|++.++|++++++||+|++|++.+.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~I~~~~~~~~~~rG~~i~dlig~~~~f~~~~~ll~~g~~p~~~~~ 400 (608)
T PLN02522 321 GKIIPVKEVTPPQIPEDLNSAIKSGKVRAPTHIVSTISDDRGEEPCYAGVPMSSIIEKDYGVGDVISLLWFKRSLPRYCT 400 (608)
T ss_pred CceeecCCCCCCCCCcchHHHHhCCceecccceEEEeecCCCCeeEECCccHHHHhccCCCHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999976799999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCccchhhhhhccCCCChHHHHHHhhhccCCCCcCccHHHHHHHHHHhccCcCHHHHHHHHHHcC
Q 007327 401 QFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKG 480 (608)
Q Consensus 401 ~~l~~~lvl~aDHgl~~st~~aar~~aSt~a~~~~av~agl~a~Gp~hGGa~~~a~~~l~~~~~~~~~~~~~v~~~l~~~ 480 (608)
++||++||++||||+|+||+|++|+++||++|+|+||+|||+++||+||||++.|++||+++.+.+.+++++|+++++++
T Consensus 401 ~~ld~~Lvl~ADHG~~aSt~~aarv~AStg~dl~savaaGl~alGp~hGGA~e~a~~~l~ei~~~~~~~~~~V~~~~~~~ 480 (608)
T PLN02522 401 KFIEMCIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGLTPYEFVEGMKKKG 480 (608)
T ss_pred HHHHHHHHHhccCCCCccHHHHHHHhhccCCcHHHHHHHHHHhcCCcccchHHHHHHHHHHHhccccCHHHHHHHHHhCC
Confidence 99999999999999999997799999999999999999999999999999999999999999876458999999999999
Q ss_pred CCcCCCCCCCCCCCCCcHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhccCCcccchhhHHHHHHHHhcccCCCCChhh
Q 007327 481 IRVPGIGHRIKRGDNRDKRVELLQKFARTHFPSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFSKQE 560 (608)
Q Consensus 481 ~~ipGFGH~vy~~~~~DPRa~~L~~~~~~~~~~~~~~~~a~~~e~~~~~~~~~l~~Nvd~~~a~l~~~lG~~~~~f~~~~ 560 (608)
++|||||||+|+.+++|||+++|++++++++..++++++++++|+++.+++++|+|||||++|+++++||+|.+|||++|
T Consensus 481 ~~IpGFGHrvy~~~~~DpRa~~L~~~~~~~~~~~~~~~~a~~vE~~~~~~~k~L~~NVDga~a~i~~~lg~p~~~ft~~e 560 (608)
T PLN02522 481 IRVPGIGHRIKSRDNRDKRVELLQKYARTHFPSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFTKQE 560 (608)
T ss_pred CccccCCCCCCCCCCCChhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccCCCCcCcHhHHHHHHHHcCCCcccCcccc
Confidence 99999999999777889999999999999988899999999999987666799999999999999999999999999999
Q ss_pred HHHHHhhhcchhhhHhhhhhhhhhhHHHhhhcCCCCCCCCCccccccC
Q 007327 561 IDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLYTK 608 (608)
Q Consensus 561 ~~~~~p~~~~~~lf~~~R~~G~iAH~~Eq~~~~~p~~~~~~~~~~y~~ 608 (608)
+++++.+++++++|+++|++||+||++||+++.+|++|++||+|+|+|
T Consensus 561 ~~~~~~~~~~~~lF~l~R~~GwiAH~~Eq~~~~~~~~r~~~~~i~y~~ 608 (608)
T PLN02522 561 IDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLYTK 608 (608)
T ss_pred ccccccccccceEEEeehHHHHHHHHHHHHHhhCCcccCchhhccccC
Confidence 999999999999999999999999999999999999999999999986
No 2
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=100.00 E-value=4.6e-65 Score=558.53 Aligned_cols=307 Identities=18% Similarity=0.264 Sum_probs=272.3
Q ss_pred cCCCCCCCcEEEEEc------CCchHHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcC
Q 007327 3 TGQLFSKTTQALFYN------YKQLPIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAH 76 (608)
Q Consensus 3 ~~~l~~p~s~avv~g------~~~~~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~ 76 (608)
+++||+|+||||||. ++.++++||+++||. | .|++|| |+.. +++|+|||+|++|+++
T Consensus 1 l~~l~~p~siavvGaS~~~~~~g~~~~~~l~~~gf~---g--~v~~Vn-p~~~---------~i~G~~~~~sl~~lp~-- 63 (447)
T TIGR02717 1 LEHLFNPKSVAVIGASRDPGKVGYAIMKNLIEGGYK---G--KIYPVN-PKAG---------EILGVKAYPSVLEIPD-- 63 (447)
T ss_pred CccccCCCEEEEEccCCCCCchHHHHHHHHHhCCCC---C--cEEEEC-CCCC---------ccCCccccCCHHHCCC--
Confidence 368999999999954 234499999999997 5 589999 8654 8999999999999854
Q ss_pred CCccEEEEeccChhcHHHHHHHhcCCCCCEEEEecCCCCHH------HHHHHHHHHHhCCCeEEcCCcccccccCccccc
Q 007327 77 PMADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEA------DTKQLIAYARSNNKVVIGPATVGGIQAGAFKIG 150 (608)
Q Consensus 77 p~vDlavi~vp~~~~~~~~le~~~~~gv~~~viis~Gf~e~------~~~~l~~~a~~~g~rvlGPNc~Gi~~~~~~~l~ 150 (608)
++|++||+||++. +++++++|.++|+|.++|+|+||+|. +|++|+++||++|+||+||||+|++||.. ++
T Consensus 64 -~~Dlavi~vp~~~-~~~~l~e~~~~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvlGPnc~G~~~~~~-~l- 139 (447)
T TIGR02717 64 -PVDLAVIVVPAKY-VPQVVEECGEKGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLLGPNCLGIINTHI-KL- 139 (447)
T ss_pred -CCCEEEEecCHHH-HHHHHHHHHhcCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEEecCeeeEecCCC-Ce-
Confidence 4899999999986 78889999999999999999999984 68999999999999999999999999998 77
Q ss_pred ccCCcccccccccCCCCCcEEEEecChhHHHHHHHHHHhcCCceeEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEE
Q 007327 151 DTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLG 230 (608)
Q Consensus 151 ~~~~~~~~~~p~~~~~~G~valvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~T~~I~ly~ 230 (608)
+++|.+.. +++|+||+|||||+++.++++|+.++|+|||++||+||++ |+++.|+|+||.+||+||+|++|+
T Consensus 140 --~~~~~~~~----~~~G~valvsqSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~--d~~~~d~l~~l~~D~~t~~I~ly~ 211 (447)
T TIGR02717 140 --NATFAPTM----PKKGGIAFISQSGALLTALLDWAEKNGVGFSYFVSLGNKA--DIDESDLLEYLADDPDTKVILLYL 211 (447)
T ss_pred --eeecCCCC----CCCCCEEEEechHHHHHHHHHHHHhcCCCcceEEECCchh--hCCHHHHHHHHhhCCCCCEEEEEe
Confidence 67775433 3699999999999999999999999999999999999999 999999999999999999999999
Q ss_pred ecCCccHHHHHHHHHhCCCCCCEEEEEeCCCccCcccccccCCCCCcCCCCcchHHHHHHHHHHcCCcccCCHHHHHHHH
Q 007327 231 ELGGRDEYSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAI 310 (608)
Q Consensus 231 E~g~~~~~~f~~~~r~a~~~KPVvvlk~Grs~~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaGvi~v~~~~el~~~~ 310 (608)
| +++|+++|++++|+++++||||++|+|||+.| +++++||||+++|++ ++|+++|||+|+++++|++||++++
T Consensus 212 E-~~~~~~~f~~aa~~a~~~KPVv~~k~Grs~~g--~~aa~sHtgalag~~----~~~~a~~~~~Gv~~~~~~~el~~~~ 284 (447)
T TIGR02717 212 E-GIKDGRKFLKTAREISKKKPIVVLKSGTSEAG--AKAASSHTGALAGSD----EAYDAAFKQAGVIRADSIEELFDLA 284 (447)
T ss_pred c-CCCCHHHHHHHHHHHcCCCCEEEEecCCChhh--hhhhhhccccccChH----HHHHHHHHHCCeEEeCCHHHHHHHH
Confidence 9 99999999999999988999999999999999 999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCCchhhhHHHHhcccCCcchhhhheeccCC
Q 007327 311 KETFEKLVEEGKIPPVKEVTPPQIPEDLNTAIKSGKVRAPTHIISTISDDRG 362 (608)
Q Consensus 311 ~~~~~~~~~~G~~~~~~~~~~p~~~~~~~~~rllA~~p~i~A~~t~I~~~~g 362 (608)
+.|.. .+.|..++ +-+++............+...|
T Consensus 285 ~~l~~-------------~~~~~g~r----vaivs~sGG~g~l~aD~~~~~G 319 (447)
T TIGR02717 285 RLLSN-------------QPLPKGNR----VAIITNAGGPGVIATDACEENG 319 (447)
T ss_pred HHHhc-------------CCCCCCCe----EEEEECCchHHHHHHHHHHHcC
Confidence 88775 44555555 5566666666666655444333
No 3
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=100.00 E-value=4.9e-64 Score=518.22 Aligned_cols=283 Identities=28% Similarity=0.426 Sum_probs=244.5
Q ss_pred CCCCCCCcEEEEEcCCch----HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCc
Q 007327 4 GQLFSKTTQALFYNYKQL----PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMA 79 (608)
Q Consensus 4 ~~l~~p~s~avv~g~~~~----~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~v 79 (608)
..+++.+++++|+|++++ +++||++|||. .+++|| |+++. ++++|+|||+|++|+|+.. +|
T Consensus 2 ~~~~~~~~~~~v~~~~~~~g~~~l~~l~~~g~~------~v~pVn-p~~~~-------~~v~G~~~y~sv~dlp~~~-~~ 66 (291)
T PRK05678 2 SILINKDTKVIVQGITGKQGTFHTEQMLAYGTN------IVGGVT-PGKGG-------TTVLGLPVFNTVAEAVEAT-GA 66 (291)
T ss_pred ceEecCCCeEEEeCCCchHHHHHHHHHHHCCCC------EEEEEC-CCCCC-------CeEeCeeccCCHHHHhhcc-CC
Confidence 467899999999998765 99999999862 688999 87421 5999999999999987632 28
Q ss_pred cEEEEeccChhcHHHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCeEEcCCcccccccCcccccccCCccccc
Q 007327 80 DVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNI 159 (608)
Q Consensus 80 Dlavi~vp~~~~~~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~rvlGPNc~Gi~~~~~~~l~~~~~~~~~~ 159 (608)
|+|||+||++. +++++++|.++|||.+||+|+||++.++++|+++||++|+||+||||+|++||.. ++ +++|...
T Consensus 67 DlAvi~vp~~~-v~~~l~e~~~~gvk~avI~s~Gf~~~~~~~l~~~a~~~girvlGPNc~Gi~~~~~-~~---~~~~~~~ 141 (291)
T PRK05678 67 NASVIYVPPPF-AADAILEAIDAGIDLIVCITEGIPVLDMLEVKAYLERKKTRLIGPNCPGIITPGE-CK---IGIMPGH 141 (291)
T ss_pred CEEEEEcCHHH-HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEECCCCCccccccc-ce---eeecCCC
Confidence 99999999986 7888899999999999999999998778899999999999999999999999988 55 4555432
Q ss_pred ccccCCCCCcEEEEecChhHHHHHHHHHHhcCCceeEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCccHHH
Q 007327 160 IHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYS 239 (608)
Q Consensus 160 ~p~~~~~~G~valvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~T~~I~ly~E~g~~~~~~ 239 (608)
.+++|+||+|||||+++.++++|+.++|+|||++||+||+++.|+++.|+|+||.+||+||+|++|+| +++++++
T Consensus 142 ----~~~~G~valiSQSGal~~~~~~~~~~~giG~s~~Vs~Gn~~~~dv~~~D~l~~l~~Dp~T~~I~lylE-~~~~~~~ 216 (291)
T PRK05678 142 ----IHKKGRVGVVSRSGTLTYEAVAQLTDLGFGQSTCVGIGGDPINGTNFIDVLEAFEEDPETEAIVMIGE-IGGSAEE 216 (291)
T ss_pred ----CCCCCCEEEEeccHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCCCCHHHHHHHHhhCCCCcEEEEEEe-cCCcHHH
Confidence 23699999999999999999999999999999999999996336999999999999999999999999 9999876
Q ss_pred HH-HHHHhCCCCCCEEEEEeCCCc-cCcccccccCCCCCcCCCCcchHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHH
Q 007327 240 LV-EALKQGKVNKPVVAWVSGTCA-RLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEK 316 (608)
Q Consensus 240 f~-~~~r~a~~~KPVvvlk~Grs~-~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaGvi~v~~~~el~~~~~~~~~~ 316 (608)
.. +.+++ .++||||++|+|||+ .| ++ +|||||++++..+++++|+++|||+|+++++|++||+++++++++.
T Consensus 217 ~a~~~~~~-~~~KPVV~lk~Grs~~~g--~~--~sHTGala~~~~g~~~~~~a~~~q~Gvi~v~~~~el~~~~~~~~~~ 290 (291)
T PRK05678 217 EAAEYIKA-NVTKPVVGYIAGVTAPPG--KR--MGHAGAIISGGKGTAEEKKEALEAAGVKVARTPSEIGELLKEVLKG 290 (291)
T ss_pred HHHHHHHH-cCCCCEEEEEecCCCCCC--Cc--ccchhhhccCCCCCHHHHHHHHHHCCCeECCCHHHHHHHHHHHHcc
Confidence 32 22222 258999999999999 66 43 4999999944444559999999999999999999999999999874
No 4
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=100.00 E-value=6.6e-64 Score=516.10 Aligned_cols=279 Identities=28% Similarity=0.437 Sum_probs=242.0
Q ss_pred CCCCCCcEEEEEcCCch----HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCcc
Q 007327 5 QLFSKTTQALFYNYKQL----PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMAD 80 (608)
Q Consensus 5 ~l~~p~s~avv~g~~~~----~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vD 80 (608)
.+++.++.++|.|++|+ ++++|..||| +.|++|| |+++. ++++|+|||+|++|+|+.. ++|
T Consensus 1 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~------~~v~~V~-p~~~~-------~~v~G~~~y~sv~dlp~~~-~~D 65 (286)
T TIGR01019 1 ILLDKDTKVIVQGITGSQGSFHTEQMLAYGT------NIVGGVT-PGKGG-------TTVLGLPVFDSVKEAVEET-GAN 65 (286)
T ss_pred CeecCCCcEEEecCCcHHHHHHHHHHHhCCC------CEEEEEC-CCCCc-------ceecCeeccCCHHHHhhcc-CCC
Confidence 36889999999999998 8899999964 4899999 87542 6999999999999987632 279
Q ss_pred EEEEeccChhcHHHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCeEEcCCcccccccCcccccccCCcccccc
Q 007327 81 VFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNII 160 (608)
Q Consensus 81 lavi~vp~~~~~~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~rvlGPNc~Gi~~~~~~~l~~~~~~~~~~~ 160 (608)
+|||+||++. +++++++|.++|||.+||+|+||+|.+|++|+++||++|+||+||||+|++||.. ++ +++|....
T Consensus 66 lavi~vpa~~-v~~~l~e~~~~Gvk~avIis~Gf~e~~~~~l~~~a~~~girilGPNc~Giin~~~-~~---~~~~~~~~ 140 (286)
T TIGR01019 66 ASVIFVPAPF-AADAIFEAIDAGIELIVCITEGIPVHDMLKVKRYMEESGTRLIGPNCPGIITPGE-CK---IGIMPGHI 140 (286)
T ss_pred EEEEecCHHH-HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEECCCCceEEcccc-cc---eeeccccC
Confidence 9999999986 7888899999999999999999999999999999999999999999999999998 66 56664322
Q ss_pred cccCCCCCcEEEEecChhHHHHHHHHHHhcCCceeEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCccHHHH
Q 007327 161 HCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSL 240 (608)
Q Consensus 161 p~~~~~~G~valvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~T~~I~ly~E~g~~~~~~f 240 (608)
++||+||+|||||+++.++++|+.++|+|||++||+||+++.|+++.|+|+||.+||+||+|++|+| +++++++.
T Consensus 141 ----~~~G~ValiSQSG~l~~~~~~~a~~~giG~S~~Vs~Gn~a~~dv~~~D~l~~l~~Dp~T~~I~lylE-~~~~~~~~ 215 (286)
T TIGR01019 141 ----HKPGNVGIVSRSGTLTYEAVHQLTKAGFGQSTCVGIGGDPVNGTSFIDVLEAFEKDPETEAIVMIGE-IGGSAEEE 215 (286)
T ss_pred ----CCCCcEEEEeccHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCCCCHHHHHHHHhhCCCCcEEEEEEe-cCCchHHH
Confidence 4699999999999999999999999999999999999996336999999999999999999999999 99888762
Q ss_pred HH-HHHhCCCCCCEEEEEeCCCc-cCcccccccCCCCCcCCCCcchHHHHHHHHHHcCCcccCCHHHHHHHHHHH
Q 007327 241 VE-ALKQGKVNKPVVAWVSGTCA-RLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKET 313 (608)
Q Consensus 241 ~~-~~r~a~~~KPVvvlk~Grs~-~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaGvi~v~~~~el~~~~~~~ 313 (608)
.. .+++ .++||||++|+|||+ .| ++ +||||||++...+++++|+++|||+|+++++|++||+++.+..
T Consensus 216 ~~~~~~~-~~~KPVV~lk~Grs~~~g--~~--~sHTGala~~~~g~~~~~~aa~rqaGvi~v~~~~el~d~l~~~ 285 (286)
T TIGR01019 216 AADFIKQ-NMSKPVVGFIAGATAPPG--KR--MGHAGAIISGGKGTAESKIEALEAAGVTVVKSPSDIGELLAEI 285 (286)
T ss_pred HHHHHHh-cCCCCEEEEEecCCCCcc--cc--ccchhhhhcCCCCCHHHHHHHHHHCCCeEeCCHHHHHHHHHHh
Confidence 22 2222 278999999999998 66 44 4999999922222339999999999999999999999998764
No 5
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=100.00 E-value=8.2e-64 Score=517.12 Aligned_cols=281 Identities=29% Similarity=0.443 Sum_probs=246.6
Q ss_pred CCCCCCCcEEEEEcCCch----HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCc
Q 007327 4 GQLFSKTTQALFYNYKQL----PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMA 79 (608)
Q Consensus 4 ~~l~~p~s~avv~g~~~~----~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~v 79 (608)
..|++++++++|+|++++ +++.|++| ||++|+||| |++++ ++++|+|||+|++|+|+. +++
T Consensus 6 ~~~~~~~~~v~~~gi~~~~~~~~~~~~~~y------gt~~~~gV~-p~~~~-------~~i~G~~~y~sv~dlp~~-~~~ 70 (300)
T PLN00125 6 AVFVDKNTRVICQGITGKNGTFHTEQAIEY------GTKMVGGVT-PKKGG-------TEHLGLPVFNTVAEAKAE-TKA 70 (300)
T ss_pred eEEecCCCeEEEecCCCHHHHHHHHHHHHh------CCcEEEEEC-CCCCC-------ceEcCeeccCCHHHHhhc-cCC
Confidence 457899999999999999 99999999 689999999 87642 699999999999998753 247
Q ss_pred cEEEEeccChhcHHHHHHHhcCCCCCEEEEecCCCCHH-HHHHHHHHHHhCCCeEEcCCcccccccCcccccccCCcccc
Q 007327 80 DVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEA-DTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDN 158 (608)
Q Consensus 80 Dlavi~vp~~~~~~~~le~~~~~gv~~~viis~Gf~e~-~~~~l~~~a~~~g~rvlGPNc~Gi~~~~~~~l~~~~~~~~~ 158 (608)
|+|||+||+.. +++++++|.++|||.+||+|+||+|. .|+++.++||++|+||+||||+|++||.. ++ +++|..
T Consensus 71 DlAvI~vPa~~-v~~al~e~~~~Gvk~~vIisaGf~e~g~~~~~~~~ar~~girviGPNc~Gii~~~~-~~---~~~~~~ 145 (300)
T PLN00125 71 NASVIYVPPPF-AAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGE-CK---IGIMPG 145 (300)
T ss_pred CEEEEecCHHH-HHHHHHHHHHcCCCEEEEECCCCCcccHHHHHHHHHhhcCCEEECCCCceeecccc-cc---eeecCC
Confidence 99999999986 77888888889999999999999999 56777778999999999999999999987 55 455543
Q ss_pred cccccCCCCCcEEEEecChhHHHHHHHHHHhcCCceeEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEecC----C
Q 007327 159 IIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELG----G 234 (608)
Q Consensus 159 ~~p~~~~~~G~valvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~T~~I~ly~E~g----~ 234 (608)
.. +++|+||+|||||+++.++++|+.++|+|||++||+||+.+.|+++.|+|+||.+||+||+|++|+| + +
T Consensus 146 ~~----~~~G~ValiSQSG~l~~~l~~~~~~~giG~S~~VS~Gn~~~adv~~~d~L~yl~~Dp~T~~I~ly~E-~~G~~~ 220 (300)
T PLN00125 146 YI----HKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCLEKFVKDPQTEGIILIGE-IGGTAE 220 (300)
T ss_pred CC----CCCCcEEEEeCCccHHHHHHHHHHHcCCCeEEEEEeCCCCCCCCCHHHHHHHHhhCCCCcEEEEEec-cCCchH
Confidence 32 3699999999999999999999999999999999999993339999999999999999999999999 6 7
Q ss_pred ccHHHHHHHHHhCCCCCCEEEEEeCCCc-cCcccccccCCCCCcCCCCcchHHHHHHHHHHcCCcccCCHHHHHHHHHHH
Q 007327 235 RDEYSLVEALKQGKVNKPVVAWVSGTCA-RLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKET 313 (608)
Q Consensus 235 ~~~~~f~~~~r~a~~~KPVvvlk~Grs~-~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaGvi~v~~~~el~~~~~~~ 313 (608)
+|+++|++++++ +||||++|+|||+ .| ++ +|||||++....+++++|+++|||+|+++++|++||+++.+..
T Consensus 221 ~d~~~f~~aa~~---~KPVV~lk~Grs~~~g--~~--~sHTGala~~~~G~~~~~~a~~rq~Gvi~v~~~~el~~~~~~~ 293 (300)
T PLN00125 221 EDAAAFIKESGT---EKPVVAFIAGLTAPPG--RR--MGHAGAIVSGGKGTAQDKIKALREAGVTVVESPAKIGVAMLEV 293 (300)
T ss_pred HHHHHHHHHhcC---CCCEEEEEecCCCCCC--CC--ccchhhhhcCCCCCHHHHHHHHHHCCCeEeCCHHHHHHHHHHH
Confidence 799999998764 8999999999997 66 44 4999999721123339999999999999999999999999988
Q ss_pred HHH
Q 007327 314 FEK 316 (608)
Q Consensus 314 ~~~ 316 (608)
++.
T Consensus 294 ~~~ 296 (300)
T PLN00125 294 FKE 296 (300)
T ss_pred HHh
Confidence 864
No 6
>KOG1254 consensus ATP-citrate lyase [Energy production and conversion]
Probab=100.00 E-value=1.1e-62 Score=515.02 Aligned_cols=599 Identities=58% Similarity=0.896 Sum_probs=549.4
Q ss_pred cCCCCCCCcEEEEEcCCchHHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEE
Q 007327 3 TGQLFSKTTQALFYNYKQLPIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVF 82 (608)
Q Consensus 3 ~~~l~~p~s~avv~g~~~~~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDla 82 (608)
...||+-+++||++|+..|.+|.+.+ .++.|.+..|++..+.++.++|..-.=+|+|++..+..-++|++|.-
T Consensus 2 ~k~lfe~dtKAi~~~~q~ravqlckr-------~~psVaa~~~~~~~~lqk~~~g~kei~IPv~~t~~~a~~~hp~~dv~ 74 (600)
T KOG1254|consen 2 RKKLFEYDTKAIVWGMQQRAVQLCKR-------HFPSVAAIIYFTGDRLQKIYFGQKEILIPVEKTMENALVEHPEADVE 74 (600)
T ss_pred CcchhhccchHhhhhhhhhhhhhhhc-------cCccceeeecccccchhheecCCceEEeechhhHHHHHhcCccccee
Confidence 46799999999999999988874433 44678888888777778889998777799999999988888888888
Q ss_pred EEeccChhcHHHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCeEEcCCcccccccCcccccccCCcccccccc
Q 007327 83 INFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHC 162 (608)
Q Consensus 83 vi~vp~~~~~~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~rvlGPNc~Gi~~~~~~~l~~~~~~~~~~~p~ 162 (608)
+-+-.-..++...++....-.++.+-|+++|.+|.+..+++..+++.+..++||-+.|.+-|..+++|+..++..+....
T Consensus 75 ~~faS~rsv~k~~m~~~k~~ki~lvAiiAegvpe~~~~kl~~~a~~k~~~iiGPaTvggVePg~fkignt~g~~dnil~~ 154 (600)
T KOG1254|consen 75 PWFASTRSVAKPDMLALKRGKIGLVAIIAEGVPEADTRKLRAGAEVKGVGIIGPATVGGVEPGVFKIGNTGGMMDNILNS 154 (600)
T ss_pred echhhhhhhhcchHHHhhcCcceEEEEEecCCcHHHHHHHHhccccccceEEeeeeeccccCCccccCCCCcchhhhhhh
Confidence 87776666677788888878899999999999999999999999999999999999999999987776444455555555
Q ss_pred cCCCCCcEEEEecChhHHHHHHHHHHhcCCceeEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCccHHHHHH
Q 007327 163 KLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVE 242 (608)
Q Consensus 163 ~~~~~G~valvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~T~~I~ly~E~g~~~~~~f~~ 242 (608)
..++||.+++||.||++..++.+...+.=.|...-+.+|++.+++.++.|-+--+.+||.+|-|++..|++...+-.|++
T Consensus 155 klyR~Gsv~~vS~sGGmsnE~nn~isrtt~g~~egiaiggd~~pgSTl~dhi~r~q~~~~vk~Iv~Lgevgg~~ey~~~e 234 (600)
T KOG1254|consen 155 KLYRPGSVIYVSRSGGMSNELNNIISRTTDGPYEGIAIGGDRYPGSTLIDHIPREQHDPLVKFIVVLGEVGGDEEYTFLE 234 (600)
T ss_pred cccCCccEEEEecCCCcchhhhhhhhheeccceeeeeccCCCccCchHhhhhhhhhccChhheEEeehhhcccceeehhh
Confidence 66799999999999999999988777778899999999999999999999999999999999999999998888999999
Q ss_pred HHHhCCCCCCEEEEEeCCCccCcccccccCCCCCcCCCCcchHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHHHHhcCC
Q 007327 243 ALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEKLVEEGK 322 (608)
Q Consensus 243 ~~r~a~~~KPVvvlk~Grs~~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaGvi~v~~~~el~~~~~~~~~~~~~~G~ 322 (608)
+.++.+..||+|++-.|.+..-++.+..+.|.|+-+....+++.+++++++.+|+.+.+++++|-...+..+..+...|.
T Consensus 235 ~~k~g~~tkPlVaw~~gtcA~~F~~evqfghagtaa~~~~eka~akn~al~~ag~~vpesf~~l~~~i~~~~e~lv~~Gr 314 (600)
T KOG1254|consen 235 ANKEGKITKPLVAWCIGTCADMFPLEVQFGHAGTAAFKNGEKAAAKNQALRDAGATVPESFDALGADIQETYEFLVPFGR 314 (600)
T ss_pred hhhcCCccCCEEEEecCccccccchhhhccccchhhhcchhhhhhcchhhhhccccCccchhhhhhhhccchhcccccce
Confidence 99998899999999999988888899999999999999989999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCchhhhHHHHhcccCCcchhhhheeccCCCCcccCCCCCCcccccCCcHHHHHHHhhcCCCCChhHHHH
Q 007327 323 IPPVKEVTPPQIPEDLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQF 402 (608)
Q Consensus 323 ~~~~~~~~~p~~~~~~~~~rllA~~p~i~A~~t~I~~~~g~~i~~~g~dl~~li~~~~~~~~~l~~l~~~~~~~~~~~~~ 402 (608)
+.|.++..+|..|+|.++.+.++.+...+.++|.||..+|.+++|.|...+......+.....+.++|+.+++++...++
T Consensus 315 vvp~~Ev~pp~lp~d~saalklgllr~p~~i~t~Ia~~rGaeviYA~~p~~~~~a~elG~gg~~Sllw~~~~lp~Ya~kf 394 (600)
T KOG1254|consen 315 VVPKTEVPPPGLPEDTSAALKLGLLRKPGRIWTSIAGGRGAEVIYADVPISLGYASELGNGGVYSLLWFQRRLPQYARKF 394 (600)
T ss_pred ecCcccCCCCCCChhhhhHhhhccccCCceEEEEecCCCCceeeecCchhhhhhHhhccccceEccccccccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999877654444445556677889999999999999
Q ss_pred HHHHHHHhcCCCCCCccchhhhhhccCCCChHHHHHHhhhccCCCCcCccHHHHHHHHHHhccCcCHHHHHHHHHHcCCC
Q 007327 403 IEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIR 482 (608)
Q Consensus 403 l~~~lvl~aDHgl~~st~~aar~~aSt~a~~~~av~agl~a~Gp~hGGa~~~a~~~l~~~~~~~~~~~~~v~~~l~~~~~ 482 (608)
+|.++++.+|||..+|-++-+-+.+.+++++++++++||...|++.||+...+.|.+.+..+.+-.+-+++.+++..+..
T Consensus 395 ie~~~m~~aDhgp~Vsga~ntI~~~ra~kdl~sslv~gLltigdRfggald~aaR~f~~ayd~GL~~m~fv~~~~k~~~~ 474 (600)
T KOG1254|consen 395 IEICTMLTADHGPAVSGAGNTIANFRAGKDLFSSLVRGLLTIGDRFGGALDIAARRFGPAYDKGLAPMRFVGKMRKVPIE 474 (600)
T ss_pred HHHHhhccCCCCceeEeccCceEEeccHHHHHHHHHHHHhhhhhhhcchhhHHHHhcChhhhccCchHHHhhhhhCCCce
Confidence 99999999999999999888888899999999999999999999999999999999999988777788999999999999
Q ss_pred cCCCCCCCCCCCCCcHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhccCCcccchhhHHHHHHHHhcccCCCCChhhHH
Q 007327 483 VPGIGHRIKRGDNRDKRVELLQKFARTHFPSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFSKQEID 562 (608)
Q Consensus 483 ipGFGH~vy~~~~~DPRa~~L~~~~~~~~~~~~~~~~a~~~e~~~~~~~~~l~~Nvd~~~a~l~~~lG~~~~~f~~~~~~ 562 (608)
|||.|||+-.-+++|-|.++|++++++.++..|+++.|.++|++...++.+|..|||+++|.+|.||=...+|||.||++
T Consensus 475 V~Gighriksi~n~d~rv~~lk~~~~~~fp~~~~~~yal~ve~~t~~k~~nlilnvdg~i~~~fvd~l~~~g~ft~~e~~ 554 (600)
T KOG1254|consen 475 VYGIGHRIKSINNPDKRVEILKAFARKNFPATPLLDYALEVEKITTSKKPNLILNVDGAIAVLFVDLLRNSGMFTKEEAD 554 (600)
T ss_pred ecCCcceeeccCCcccchhhHHHHHHhhCCCchHHHhhhhheeeeccCCCCEEEeccchhHHHHHHHHhccCCccHHHhh
Confidence 99999999988899999999999999999999999999999999877899999999999999999998889999999999
Q ss_pred HHHhhhcchhhhHhhhhhhhhhhHHHhhhcCCCCCCCCCccccccC
Q 007327 563 EIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLYTK 608 (608)
Q Consensus 563 ~~~p~~~~~~lf~~~R~~G~iAH~~Eq~~~~~p~~~~~~~~~~y~~ 608 (608)
|++..+..+++|+++|..|+|.|+++|.++.+|++|+|||++.|.+
T Consensus 555 e~i~ig~lng~fvl~rsig~igh~~dqkrlkq~lyrhpwdd~~y~~ 600 (600)
T KOG1254|consen 555 EYINIGALNGLFVLGRSIGFIGHYLDQKRLKQGLYRHPWDDISYVK 600 (600)
T ss_pred hheecccccceEEeeeecchhhhhccHhhhhCccccCCchhhhhcC
Confidence 9999999999999999999999999999999999999999999975
No 7
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=100.00 E-value=5.1e-61 Score=497.52 Aligned_cols=282 Identities=29% Similarity=0.447 Sum_probs=244.9
Q ss_pred CCCCCCCcEEEEEcCCch----HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceee--cccccCCHHHHhhcCC
Q 007327 4 GQLFSKTTQALFYNYKQL----PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEI--AIPVHSTVEAACAAHP 77 (608)
Q Consensus 4 ~~l~~p~s~avv~g~~~~----~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~--G~~~y~sv~~i~~~~p 77 (608)
..|++++++++|+|++|+ +.++|++| ||++|+||| |+++| ++++ |+|||+|++|+++.+
T Consensus 23 ~i~~~~~t~v~vqGitg~~g~~h~~~~~~y------gt~iv~GV~-Pgkgg-------~~v~~~Gvpvy~sv~ea~~~~- 87 (317)
T PTZ00187 23 RVWVNKNTKVICQGITGKQGTFHTEQAIEY------GTKMVGGVN-PKKAG-------TTHLKHGLPVFATVKEAKKAT- 87 (317)
T ss_pred cEEEcCCCeEEEecCCChHHHHHHHHHHHh------CCcEEEEEC-CCCCC-------ceEecCCccccCCHHHHhccc-
Confidence 458999999999999999 99999999 689999999 98874 6899 999999999998754
Q ss_pred CccEEEEeccChhcHHHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHH-hCCCeEEcCCcccccccCcccccccCCcc
Q 007327 78 MADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYAR-SNNKVVIGPATVGGIQAGAFKIGDTAGTI 156 (608)
Q Consensus 78 ~vDlavi~vp~~~~~~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~-~~g~rvlGPNc~Gi~~~~~~~l~~~~~~~ 156 (608)
++|++||+||+.+ +++++++|.++|||.+||+|+||+|.+..++.++++ ++|+||+||||+|++||..++++
T Consensus 88 ~~D~avI~VPa~~-v~dai~Ea~~aGI~~~ViiteGfpe~d~~~l~~~~~~~~g~rliGPNc~Gii~p~~~~~g------ 160 (317)
T PTZ00187 88 GADASVIYVPPPH-AASAIIEAIEAEIPLVVCITEGIPQHDMVKVKHALLSQNKTRLIGPNCPGIIKPGECKIG------ 160 (317)
T ss_pred CCCEEEEecCHHH-HHHHHHHHHHcCCCEEEEECCCCchhhHHHHHHHHhhcCCCEEECCCCceEEcchhhccc------
Confidence 4899999999997 556666677799999999999999998778877774 59999999999999999874443
Q ss_pred cccccccCCCCCcEEEEecChhHHHHHHHHHHhcCCceeEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCc-
Q 007327 157 DNIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGR- 235 (608)
Q Consensus 157 ~~~~p~~~~~~G~valvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~T~~I~ly~E~g~~- 235 (608)
.+|...++||+||+|||||++++++++++.++|+|||++||+||+.+.|+++.|+|+||.+||+|++|++|+|++..
T Consensus 161 --i~p~~~~~~G~VgiVSqSGtl~~ei~~~~~~~GlG~S~~VsiGnd~~~g~~~~D~L~~~~~Dp~T~~Ivl~~E~gG~~ 238 (317)
T PTZ00187 161 --IMPGHIHKKGKIGIVSRSGTLTYEAVAQTTAVGLGQSTCVGIGGDPFNGTNFIDCLKLFLNDPETEGIILIGEIGGTA 238 (317)
T ss_pred --cCCcCCCCCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEEEEeCCCCCCCCCHHHHHHHHhhCCCccEEEEEEecCCch
Confidence 23444457999999999999999999999999999999999999988899999999999999999999999994333
Q ss_pred --cHHHHHHHHHhCCCCCCEEEEEeCCCc-cCcccccccCCCCCcCCCCcchHHHHHHHHHHcCCcccCCHHHHHHHHHH
Q 007327 236 --DEYSLVEALKQGKVNKPVVAWVSGTCA-RLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKE 312 (608)
Q Consensus 236 --~~~~f~~~~r~a~~~KPVvvlk~Grs~-~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaGvi~v~~~~el~~~~~~ 312 (608)
++++|++. ..++||||+||+|||+ .| ++ +|||||++....+++++|+++|+|+|+++++|++||.++++.
T Consensus 239 e~~aa~fi~~---~~~~KPVVa~~aGrsap~G--~r--~gHaGAi~~~~~G~~~~k~aal~qaGv~v~~~~~el~~~~~~ 311 (317)
T PTZ00187 239 EEEAAEWIKN---NPIKKPVVSFIAGITAPPG--RR--MGHAGAIISGGKGTAPGKIEALEAAGVRVVKSPAQLGKTMLE 311 (317)
T ss_pred hHHHHHHHHh---hcCCCcEEEEEecCCCCCC--Cc--ccchhhhhccCCCCHHHHHHHHHHCCCeEeCCHHHHHHHHHH
Confidence 34455544 3468999999999997 55 44 599999995444566999999999999999999999999988
Q ss_pred HHHH
Q 007327 313 TFEK 316 (608)
Q Consensus 313 ~~~~ 316 (608)
.+++
T Consensus 312 ~~~~ 315 (317)
T PTZ00187 312 VMKK 315 (317)
T ss_pred HHHh
Confidence 7764
No 8
>COG0372 GltA Citrate synthase [Energy production and conversion]
Probab=100.00 E-value=1.1e-58 Score=491.46 Aligned_cols=244 Identities=25% Similarity=0.321 Sum_probs=222.8
Q ss_pred hhhhHHHHhcccCCcchhhhheeccCCCCcccCCCCCCcccccCCcHHHHHHHhhcCCCCC-hhHHHHHHHHHHHhcCCC
Q 007327 336 EDLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLP-RYCTQFIEICIMLCADHG 414 (608)
Q Consensus 336 ~~~~~~rllA~~p~i~A~~t~I~~~~g~~i~~~g~dl~~li~~~~~~~~~l~~l~~~~~~~-~~~~~~l~~~lvl~aDHg 414 (608)
....+.|++|++|+|++++|+ ...|++++.|..+++ +.+||++|+ +|..|+ +...++||++||||||||
T Consensus 128 ~~~~a~rlia~~pti~a~~yr--~~~g~~~i~p~~~~s-------~a~nfL~ml-~g~~p~~~~~~~a~d~~LiL~ADHe 197 (390)
T COG0372 128 RREAALRLIAKLPTIAAAVYR--YSRGEPPIAPDPDLS-------YAENFLYML-FGEPPSPPVEARAMDRALILHADHE 197 (390)
T ss_pred hHHHHHHHHHHhhHHHHHHHH--HhcCCCCccCCCCcc-------HHHHHHHHH-cCCCCCcHHHHHHHHHHHHHHhccC
Confidence 346678999999999999999 677999988999998 889999988 788888 489999999999999999
Q ss_pred CCCccchhhhhhccCCCChHHHHHHhhhcc-CCCCcCccHHHHHHHHHHhccCcCHHHHHHHHHHcCCCcCCCCCCCCCC
Q 007327 415 PCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRG 493 (608)
Q Consensus 415 l~~st~~aar~~aSt~a~~~~av~agl~a~-Gp~hGGa~~~a~~~l~~~~~~~~~~~~~v~~~l~~~~~ipGFGH~vy~~ 493 (608)
+|+|| |++|+++||++|+|+|++|||+++ ||+||||+|.|++||+++.+..+++++||++.++++++||||||||||.
T Consensus 198 ~NAST-ftarvvaST~sd~ys~i~agi~aL~GPlHGGAne~v~~ml~ei~~~~~~~~~~v~~~l~~~~~imGFGHRVYk~ 276 (390)
T COG0372 198 LNAST-FTARVVASTGSDLYACIAAGIGALKGPLHGGANEAVMKMLEEIGSSGESAEAYVRKALDRKERIMGFGHRVYKN 276 (390)
T ss_pred CCcHH-HHHHHHHhcCCcHHHHHHHHHHHcCCCccCChHHHHHHHHHHHcccchhHHHHHHHHHhCCCCcCCCCCCCCCC
Confidence 99999 999999999999999999999998 9999999999999999999775459999999999999999999999994
Q ss_pred CCCcHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHhh-c--cCCcccchhhHHHHHHHHhcccCCCCChhhHHHHHhh
Q 007327 494 DNRDKRVELLQKFARTHF---PSVKYMEYAVQVETYTLS-K--ANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEI 567 (608)
Q Consensus 494 ~~~DPRa~~L~~~~~~~~---~~~~~~~~a~~~e~~~~~-~--~~~l~~Nvd~~~a~l~~~lG~~~~~f~~~~~~~~~p~ 567 (608)
.|||+++|+++++++. ++.++++++.++|+.+.+ . .|+++||||||+|.+++.||||.+|||+
T Consensus 277 --~DPRa~~lk~~a~~l~~~~g~~~~~~~a~~~e~~~l~~~~~~k~l~PNvDfysg~v~~~lGiP~~~fT~--------- 345 (390)
T COG0372 277 --YDPRAKVLKELAEKLGKELGDLKLYEIAEELEEIALEDLGFEKKLYPNVDFYSGIVYRALGIPTDMFTP--------- 345 (390)
T ss_pred --CCchHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHhhhcccCCCCccccchHHHHHHcCCCHHhhhh---------
Confidence 6999999999999984 334899999999999764 2 6999999999999999999999999999
Q ss_pred hcchhhhHhhhhhhhhhhHHHhhhcCCCCCCCCCccccc
Q 007327 568 GYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLY 606 (608)
Q Consensus 568 ~~~~~lf~~~R~~G~iAH~~Eq~~~~~p~~~~~~~~~~y 606 (608)
||++||++||+|||+||+..+.+|.|+.+..+-+
T Consensus 346 -----lFaiaR~~GW~AH~~Eq~~~~~riiRPr~~Y~G~ 379 (390)
T COG0372 346 -----LFAIARTVGWIAHWIEQKEDGNKIIRPRALYTGP 379 (390)
T ss_pred -----hhhhhhHHHHHHHHHHHHhccCCccCChhhhcCc
Confidence 9999999999999999997767888887766544
No 9
>PRK12350 citrate synthase 2; Provisional
Probab=100.00 E-value=7.2e-56 Score=466.84 Aligned_cols=231 Identities=22% Similarity=0.269 Sum_probs=212.6
Q ss_pred hhHHHHhcccCCcchhhhheeccCC-CCcccCCCCCCcccccCCcHHHHHHHhhcCC---CCChhHHHHHHHHHHHhcCC
Q 007327 338 LNTAIKSGKVRAPTHIISTISDDRG-EEPCYAGVPMSSIVEQGYGVGDVISLLWFKR---SLPRYCTQFIEICIMLCADH 413 (608)
Q Consensus 338 ~~~~rllA~~p~i~A~~t~I~~~~g-~~i~~~g~dl~~li~~~~~~~~~l~~l~~~~---~~~~~~~~~l~~~lvl~aDH 413 (608)
.+.++|+|++|+|++++|+ ++.| ++++.|+.+++ +.+||++|+ +|. +|+++++++||++|||||||
T Consensus 99 ~~~~rliA~~pti~a~~~r--~~~g~~~~i~p~~~ls-------~a~nfl~ml-~g~~~~~p~~~~~~~ld~~LiL~ADH 168 (353)
T PRK12350 99 TARLDLARASVMALSAVAQ--SARGIGQPAVPQREID-------HAATILERF-MGRWRGEPDPAHVAALDAYWVSAAEH 168 (353)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHcCCCCCcCCCCCCC-------HHHHHHHHh-ccCccCCCCHHHHHHHHHHHHHhccC
Confidence 4558999999999999999 7788 78889999998 999999998 677 78889999999999999999
Q ss_pred CCCCccchhhhhhccCCCChHHHHHHhhhcc-CCCCcCccHHHHHHHHHHhccCcCHHHHHHHHHHcCCCcCCCCCCCCC
Q 007327 414 GPCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKR 492 (608)
Q Consensus 414 gl~~st~~aar~~aSt~a~~~~av~agl~a~-Gp~hGGa~~~a~~~l~~~~~~~~~~~~~v~~~l~~~~~ipGFGH~vy~ 492 (608)
|+|+|| |++|+++||++|+|+||+||++++ ||+||||+|+|++||+++.+. +++++||+++++++++|||||||+||
T Consensus 169 g~naST-faaRv~aSt~adlysav~agi~aL~GplHGGA~e~v~~ml~ei~~~-~~~~~~v~~~l~~~~ri~GFGHrvYk 246 (353)
T PRK12350 169 GMNAST-FTARVIASTGADVAAALSGAIGALSGPLHGGAPARVLPMLDAVERT-GDARGWVKGALDRGERLMGFGHRVYR 246 (353)
T ss_pred CCCcch-HHHHHHhccCCcHHHHHHHHHhhcCCCcccChHHHHHHHHHHhCCh-hhHHHHHHHHHHCCCccccCCCCCCC
Confidence 999999 999999999999999999999998 999999999999999999876 68999999999999999999999998
Q ss_pred CCCCcHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhc------cCCcccchhhHHHHHHHHhcccCCCCChhhHHHHHh
Q 007327 493 GDNRDKRVELLQKFARTHFPSVKYMEYAVQVETYTLSK------ANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVE 566 (608)
Q Consensus 493 ~~~~DPRa~~L~~~~~~~~~~~~~~~~a~~~e~~~~~~------~~~l~~Nvd~~~a~l~~~lG~~~~~f~~~~~~~~~p 566 (608)
. .|||+++|+++++++. ++++++++++|+++.+. +|+++||||||+|+++++||||.+|||+
T Consensus 247 ~--~DPRa~~L~~~~~~l~--~~~~~ia~~le~~~~~~~~~~~~~r~l~pNVDfysa~v~~~lGip~~~ft~-------- 314 (353)
T PRK12350 247 A--EDPRARVLRATAKRLG--APRYEVAEAVEQAALAELRERRPDRPLETNVEFWAAVLLDFAGVPAHMFTA-------- 314 (353)
T ss_pred C--CCCCHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHHHhcCCCCCCcChHHHHHHHHHHcCcChhhhcc--------
Confidence 5 5999999999999986 68999999999987541 6899999999999999999999999999
Q ss_pred hhcchhhhHhhhhhhhhhhHHHhhhcCCCCCCC
Q 007327 567 IGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRH 599 (608)
Q Consensus 567 ~~~~~~lf~~~R~~G~iAH~~Eq~~~~~p~~~~ 599 (608)
+|+++|++||+|||+||++.+ .+.|+
T Consensus 315 ------lFai~R~~Gw~AH~~Eq~~~~-~i~RP 340 (353)
T PRK12350 315 ------MFTCGRTAGWSAHILEQKRTG-RLVRP 340 (353)
T ss_pred ------hHHhhhHHHHHHHHHHHHhcC-CCcCC
Confidence 999999999999999998654 33344
No 10
>cd06116 CaCS_like Chloroflexus aurantiacus (Ca) citrate synthase (CS)_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group is similar to gram-negative Escherichia coli (Ec) CS (type II, gltA) and Arabidopsis thaliana (Ath) peroxisomal (Per) CS. However EcCS and AthPerCS are not found in this group. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers w
Probab=100.00 E-value=2.4e-55 Score=469.08 Aligned_cols=250 Identities=21% Similarity=0.289 Sum_probs=220.2
Q ss_pred CCCCCCCCCCCCCchhhhHHHHhcccCCcchhhhheeccCCCCcccCCCCCCcccccCCcHHHHHHHhhcCC-----CCC
Q 007327 322 KIPPVKEVTPPQIPEDLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKR-----SLP 396 (608)
Q Consensus 322 ~~~~~~~~~~p~~~~~~~~~rllA~~p~i~A~~t~I~~~~g~~i~~~g~dl~~li~~~~~~~~~l~~l~~~~-----~~~ 396 (608)
.++|+..+.......+.+++||+|++|+|+|++|+ ++.|++++.|+.+++ +.+||++|+ ++. +|+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~rliA~~p~i~A~~~r--~~~g~~~~~p~~~ls-------~a~Nfl~Ml-~g~~~~~~~p~ 175 (384)
T cd06116 106 TFYPEAKNIGDEEQRNKQIIRLIGKMPTIAAFAYR--HRLGLPYVLPDNDLS-------YTGNFLSML-FKMTEPKYEPN 175 (384)
T ss_pred hcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHH--HHcCCCccCCCCCCC-------HHHHHHHHh-CCCCCCCCCCC
Confidence 45554433222223456779999999999999999 778999999999998 899999999 665 788
Q ss_pred hhHHHHHHHHHHHhcCCCCCCccchhhhhhccCCCChHHHHHHhhhcc-CCCCcCccHHHHHHHHHHhccCcCHHHHHHH
Q 007327 397 RYCTQFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVES 475 (608)
Q Consensus 397 ~~~~~~l~~~lvl~aDHgl~~st~~aar~~aSt~a~~~~av~agl~a~-Gp~hGGa~~~a~~~l~~~~~~~~~~~~~v~~ 475 (608)
++..++||++||||||||+|+|| |++|+++||++|+|+|++||++++ ||+||||+|+|++||+++.+. ++++++|++
T Consensus 176 ~~~~~~l~~~LiL~ADH~~n~ST-faarv~aSt~ad~ysav~agi~aL~GplHGGA~e~v~~~l~ei~~~-~~~~~~v~~ 253 (384)
T cd06116 176 PVLAKALDVLFILHADHEQNCST-SAMRSVGSSRADPYTAVAAAVAALYGPLHGGANEAVLRMLQQIGSP-KNIPDFIET 253 (384)
T ss_pred HHHHHHHHHHHhhhccCCCCchh-HHHhhhhccCCCHHHHHHHHHHhccCCcccchHHHHHHHHHHhCCh-HHHHHHHHH
Confidence 89999999999999999999999 999999999999999999999997 999999999999999999876 689999999
Q ss_pred HHHcCCCcCCCCCCCCCCCCCcHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHhhc----cCCcccchhhHHHHHHHH
Q 007327 476 MKKKGIRVPGIGHRIKRGDNRDKRVELLQKFARTHF---PSVKYMEYAVQVETYTLSK----ANNLVLNVDGAIGSLFLD 548 (608)
Q Consensus 476 ~l~~~~~ipGFGH~vy~~~~~DPRa~~L~~~~~~~~---~~~~~~~~a~~~e~~~~~~----~~~l~~Nvd~~~a~l~~~ 548 (608)
.++++++|||||||+||. .|||+++|+++++++. ..++++++++++|+++.+. +|+++||||||+|+++++
T Consensus 254 ~~~~~~ri~GFGHrvyk~--~DPRa~~L~~~~~~l~~~~~~~~~~~ia~~~e~~~~~~~~~~~k~l~pNvD~ysa~l~~~ 331 (384)
T cd06116 254 VKQGKERLMGFGHRVYKN--YDPRARIIKKIADEVFEATGRNPLLDIAVELEKIALEDEYFISRKLYPNVDFYSGLIYQA 331 (384)
T ss_pred HHhcCCcccCCCCCCCCC--CChHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhhhcccCCCCChHHHHHHHHHH
Confidence 999999999999999985 5999999999998873 4578999999999966433 599999999999999999
Q ss_pred hcccCCCCChhhHHHHHhhhcchhhhHhhhhhhhhhhHHHhhhc-----CCCCCCC
Q 007327 549 LLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRL-----KQPLYRH 599 (608)
Q Consensus 549 lG~~~~~f~~~~~~~~~p~~~~~~lf~~~R~~G~iAH~~Eq~~~-----~~p~~~~ 599 (608)
||||.++||+ +|++||++||+|||+||++. .||..++
T Consensus 332 lGip~~~~t~--------------lf~isR~~Gw~AH~~Eq~~~~~~~i~RP~~~Y 373 (384)
T cd06116 332 LGFPTEAFTV--------------LFAIPRTSGWLAQWIEMLRDPEQKIARPRQVY 373 (384)
T ss_pred hCCChhhccc--------------hhhhhhhchHHHHHHHHHhCcCCcccCccccc
Confidence 9999999999 99999999999999999843 3555544
No 11
>cd06115 AthCS_per_like Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains three Arabidopsis peroxisomal CS proteins, CYS1, -2, and -3 which are involved in the glyoxylate cycle. AthCYS1, in addition to a peroxisomal targeting sequence, has a predicted secretory signal peptide; it may be targeted to both the secretory pathway and the peroxisomes and is thought to be located in the extracellular matrix. AthCSY1 is expr
Probab=100.00 E-value=2.8e-55 Score=471.15 Aligned_cols=236 Identities=22% Similarity=0.282 Sum_probs=215.7
Q ss_pred hhhhHHHHhcccCCcchhhhheeccCCCCcccCCCCCCcccccCCcHHHHHHHhhcCC-----CCChhHHHHHHHHHHHh
Q 007327 336 EDLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKR-----SLPRYCTQFIEICIMLC 410 (608)
Q Consensus 336 ~~~~~~rllA~~p~i~A~~t~I~~~~g~~i~~~g~dl~~li~~~~~~~~~l~~l~~~~-----~~~~~~~~~l~~~lvl~ 410 (608)
.++++++|+|++|+|+|++|+ ++.|++++.|+.+++ +.+||++|| ++. +|+++.+++||++||||
T Consensus 147 ~~~~a~rliA~~p~i~A~~~r--~~~g~~~~~p~~~ls-------~a~NFl~Ml-~g~~~~~~~p~~~~~~~l~~~liL~ 216 (410)
T cd06115 147 RDKQIVRILGKAPTIAAAAYR--RRAGRPPNLPSQDLS-------YTENFLYML-DSLGERKYKPNPRLARALDILFILH 216 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHcCCCCcCCCCCCC-------HHHHHHHHh-cCCCCcCCCCCHHHHHHHHHHHHHh
Confidence 457779999999999999999 778899999999998 899999999 565 78888999999999999
Q ss_pred cCCCCCCccchhhhhhccCCCChHHHHHHhhhcc-CCCCcCccHHHHHHHHHHhccCcCHHHHHHHHHHcCCCcCCCCCC
Q 007327 411 ADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHR 489 (608)
Q Consensus 411 aDHgl~~st~~aar~~aSt~a~~~~av~agl~a~-Gp~hGGa~~~a~~~l~~~~~~~~~~~~~v~~~l~~~~~ipGFGH~ 489 (608)
||||+|+|| |++|+++||++|+|+|++|||+++ ||+||||+++|++||+++.+. ++++++|++.++++++|||||||
T Consensus 217 ADH~~naST-faarv~aSt~ad~ysav~agi~aL~GplHGGA~e~v~~~l~ei~~~-~~~~~~v~~~~~~~~ri~GFGHr 294 (410)
T cd06115 217 AEHEMNCST-AAVRHLASSGVDVYTAVAGAVGALYGPLHGGANEAVLRMLAEIGTV-ENIPAFIEGVKNRKRKLSGFGHR 294 (410)
T ss_pred hccCCCchH-HHHHHHHhcCCCHHHHHHHHHhhccCCcccchHHHHHHHHHHhCCh-HHHHHHHHHHHhcCCcccCCCCC
Confidence 999999999 999999999999999999999998 999999999999999999876 68999999999999999999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHhhc----cCCcccchhhHHHHHHHHhcccCCCCChhhHH
Q 007327 490 IKRGDNRDKRVELLQKFARTHF---PSVKYMEYAVQVETYTLSK----ANNLVLNVDGAIGSLFLDLLAGSGMFSKQEID 562 (608)
Q Consensus 490 vy~~~~~DPRa~~L~~~~~~~~---~~~~~~~~a~~~e~~~~~~----~~~l~~Nvd~~~a~l~~~lG~~~~~f~~~~~~ 562 (608)
+||. .|||+++|+++++++. ..++++++++++|+++.++ .|+++||||||+|++++.||||.++||+
T Consensus 295 vYk~--~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~~e~~~~~~~~~~~k~l~pNVD~ysa~l~~~lG~p~~~~t~---- 368 (410)
T cd06115 295 VYKN--YDPRAKIIKKLADEVFEIVGKDPLIEIAVALEKAALSDEYFVKRKLYPNVDFYSGLIYRAMGFPTDFFPV---- 368 (410)
T ss_pred CCCC--CCccHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHhhhhhcccCCCCChHHHHHHHHHHcCCChHhhhh----
Confidence 9985 5999999999999874 3578999999999976543 4899999999999999999999999999
Q ss_pred HHHhhhcchhhhHhhhhhhhhhhHHHhhhc-----CCCCCCC
Q 007327 563 EIVEIGYLNGLFVLARSIGLIGHTFDQKRL-----KQPLYRH 599 (608)
Q Consensus 563 ~~~p~~~~~~lf~~~R~~G~iAH~~Eq~~~-----~~p~~~~ 599 (608)
+|++||++||+|||+||+.. .||...+
T Consensus 369 ----------lFa~sR~~Gw~AH~~Eq~~~~~~~i~RP~~~Y 400 (410)
T cd06115 369 ----------LFAIPRMAGYLAHWRESLDDPDTKIMRPQQLY 400 (410)
T ss_pred ----------HHHHHhhhhHHHHHHHHHhCCCCcccCccccc
Confidence 99999999999999999844 3555554
No 12
>cd06109 BsCS-I_like Bacillus subtilis (Bs) citrate synthase CS-I_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains proteins similar to BsCS-I, one of two CS isozymes in the gram-positive B. subtilis. The majority of CS activity in B. subtilis is provided by the other isozyme, BsCS-II (not included in this group). BsCS-
Probab=100.00 E-value=2.6e-55 Score=464.30 Aligned_cols=234 Identities=23% Similarity=0.275 Sum_probs=215.8
Q ss_pred hhhHHHHhcccCCcchhhhheeccCCCCcccCCCCCCcccccCCcHHHHHHHhhcCCCCChhHHHHHHHHHHHhcCCCCC
Q 007327 337 DLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPC 416 (608)
Q Consensus 337 ~~~~~rllA~~p~i~A~~t~I~~~~g~~i~~~g~dl~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHgl~ 416 (608)
..++++++|++|+|++++|+ ++.|++++.|+.+++ +.+||++|+ +|++|+++++++||++||||||||+|
T Consensus 103 ~~~a~~liA~~p~i~a~~~r--~~~g~~~~~p~~~ls-------~a~nfl~ml-~g~~p~~~~~~~l~~~Lvl~ADHg~n 172 (349)
T cd06109 103 LATALRLLAAAPVITAALLR--LSRGKQPIAPDPSLS-------HAADYLRML-TGEPPSEAHVRALDAYLVTVADHGMN 172 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHcCCCCcCCCCCCC-------HHHHHHHHh-CCCCCChHHHHHHHHHHhHhcccCCC
Confidence 57788999999999999999 567888999999998 899999998 78888889999999999999999999
Q ss_pred CccchhhhhhccCCCChHHHHHHhhhcc-CCCCcCccHHHHHHHHHHhccCcCHHHHHHHHHHcCCCcCCCCCCCCCCCC
Q 007327 417 VSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGDN 495 (608)
Q Consensus 417 ~st~~aar~~aSt~a~~~~av~agl~a~-Gp~hGGa~~~a~~~l~~~~~~~~~~~~~v~~~l~~~~~ipGFGH~vy~~~~ 495 (608)
+|| |++|+++||++|+|+|++|||+++ ||+||||+++|++||+++.+. +++++||++.++++++|||||||+||.
T Consensus 173 ~ST-~aaRv~aSt~ad~~savaagi~al~GplHGGA~e~v~~~l~ei~~~-~~~~~~v~~~l~~~~~i~GfGH~vyk~-- 248 (349)
T cd06109 173 AST-FTARVIASTEADLTSAVLGAIGALKGPLHGGAPGPVLDMLDAIGTP-ENAEAWLREALARGERLMGFGHRVYRV-- 248 (349)
T ss_pred chh-hHHHHHhccCCcHHHHHHHHHHhccCCcccChHHHHHHHHHHhCCh-hhHHHHHHHHHHcCCeecCCCCCCCCC--
Confidence 999 999999999999999999999998 999999999999999999876 689999999999999999999999985
Q ss_pred CcHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhh------ccCCcccchhhHHHHHHHHhcccCCCCChhhHHHHHhhhc
Q 007327 496 RDKRVELLQKFARTHFPSVKYMEYAVQVETYTLS------KANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGY 569 (608)
Q Consensus 496 ~DPRa~~L~~~~~~~~~~~~~~~~a~~~e~~~~~------~~~~l~~Nvd~~~a~l~~~lG~~~~~f~~~~~~~~~p~~~ 569 (608)
.|||+++|+++++++..+++++++++++|+++.+ .+|+++||||||+|+++++||||.++||+
T Consensus 249 ~DPRa~~L~~~~~~~~~~~~~~~~a~~ie~~~~~~~~~~~~~r~l~pNvD~~sg~l~~~lGip~~~~t~----------- 317 (349)
T cd06109 249 RDPRADVLKAAAERLGAPDERLEFAEAVEQAALALLREYKPGRPLETNVEFYTALLLEALGLPREAFTP----------- 317 (349)
T ss_pred CCcCHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhhHHHHHHHhCCChhhhhh-----------
Confidence 5999999999999998889999999999986532 26899999999999999999999999999
Q ss_pred chhhhHhhhhhhhhhhHHHhhhcCCCCCCC
Q 007327 570 LNGLFVLARSIGLIGHTFDQKRLKQPLYRH 599 (608)
Q Consensus 570 ~~~lf~~~R~~G~iAH~~Eq~~~~~p~~~~ 599 (608)
+|+++|++||+|||+||+..+ .+.|+
T Consensus 318 ---lF~isR~~Gw~AH~~Eq~~~~-~~~RP 343 (349)
T cd06109 318 ---TFAAGRTAGWTAHVLEQARTG-RLIRP 343 (349)
T ss_pred ---HHHHHhHHHHHHHHHHHHhcC-CCcCC
Confidence 999999999999999998654 34455
No 13
>PRK14035 citrate synthase; Provisional
Probab=100.00 E-value=4.7e-55 Score=464.90 Aligned_cols=249 Identities=18% Similarity=0.255 Sum_probs=223.5
Q ss_pred CCCCCCCCCCCCCCchhhhHHHHhcccCCcchhhhheeccCCCCcccCCCCCCcccccCCcHHHHHHHhhcCCCCChhHH
Q 007327 321 GKIPPVKEVTPPQIPEDLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCT 400 (608)
Q Consensus 321 G~~~~~~~~~~p~~~~~~~~~rllA~~p~i~A~~t~I~~~~g~~i~~~g~dl~~li~~~~~~~~~l~~l~~~~~~~~~~~ 400 (608)
+.++|...+..+. .....+++|+|++|+|++++++ ++.|++++.|+.+++ +.+||++|+ +|++|++.++
T Consensus 102 ~~~~~~~~~~~~~-~~~~~a~rliA~~p~i~A~~~r--~~~g~~~~~p~~~ls-------~~~nfl~ml-~g~~p~~~~~ 170 (371)
T PRK14035 102 AHFDPDAEEESDE-ARYERAIRIQAKVASLVTAFAR--VRQGKEPLKPRPDLS-------YAANFLYML-RGELPTDIEV 170 (371)
T ss_pred hccCcccccCCHH-HHHHHHHHHHHHHHHHHHHHHH--HhCCCCCCCCCCCCC-------HHHHHHHHh-ccCCCCHHHH
Confidence 4566655554443 3457889999999999999999 678999999999988 888999888 7889999999
Q ss_pred HHHHHHHHHhcCCCCCCccchhhhhhccCCCChHHHHHHhhhcc-CCCCcCccHHHHHHHHHHhccCcCHHHHHHHHHHc
Q 007327 401 QFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKK 479 (608)
Q Consensus 401 ~~l~~~lvl~aDHgl~~st~~aar~~aSt~a~~~~av~agl~a~-Gp~hGGa~~~a~~~l~~~~~~~~~~~~~v~~~l~~ 479 (608)
++||++||||||||+|+|| |++|+++||++|+|+|++||++++ ||+||||+++|++||+++.+. ++++++|++.+++
T Consensus 171 ~~l~~~LvL~ADHg~naST-~aaRv~aSt~ad~~sav~Agi~al~GplHGGA~e~v~~~l~~i~~~-~~~~~~v~~~~~~ 248 (371)
T PRK14035 171 EAFNKALVLHADHELNAST-FTARCAVSSLSDMYSGVVAAVGSLKGPLHGGANERVMDMLSEIRSI-GDVDAYLDEKFAN 248 (371)
T ss_pred HHHHHHHHHhccCCCCchH-HHHHHHHhcCCcHHHHHHHHHHhccCccccChHHHHHHHHHHhCCh-HHHHHHHHHHHhc
Confidence 9999999999999999999 999999999999999999999997 999999999999999999876 6899999999999
Q ss_pred CCCcCCCCCCCCCCCCCcHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHhhccCCcccchhhHHHHHHHHhcccCCCC
Q 007327 480 GIRVPGIGHRIKRGDNRDKRVELLQKFARTHF---PSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMF 556 (608)
Q Consensus 480 ~~~ipGFGH~vy~~~~~DPRa~~L~~~~~~~~---~~~~~~~~a~~~e~~~~~~~~~l~~Nvd~~~a~l~~~lG~~~~~f 556 (608)
+++|||||||+||. .|||+++|+++++++. ..++++++++++|+++.+ .++++||||||+|+++++||||.++|
T Consensus 249 ~~~l~GFGHrvyk~--~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~ie~~~~~-~k~l~pNvD~~s~~l~~~lG~p~~~~ 325 (371)
T PRK14035 249 KEKIMGFGHRVYKD--GDPRAKYLREMSRKITKGTGREELFEMSVKIEKRMKE-EKGLIPNVDFYSATVYHVMGIPHDLF 325 (371)
T ss_pred CCcccCCCCCCCCC--CCccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH-hcCCCCChHHHHHHHHHHcCCChHhh
Confidence 99999999999985 5999999999999884 467899999999998754 68999999999999999999999999
Q ss_pred ChhhHHHHHhhhcchhhhHhhhhhhhhhhHHHhhhcC---CCCCCC
Q 007327 557 SKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLK---QPLYRH 599 (608)
Q Consensus 557 ~~~~~~~~~p~~~~~~lf~~~R~~G~iAH~~Eq~~~~---~p~~~~ 599 (608)
|+ +|+++|++||+|||+||++.+ ||..++
T Consensus 326 t~--------------lf~i~R~~Gw~AH~~Eq~~~~~l~RP~~~Y 357 (371)
T PRK14035 326 TP--------------IFAVSRVAGWIAHILEQYKDNRIMRPRAKY 357 (371)
T ss_pred hh--------------HHHHHhHHHHHHHHHHHHhcCCccCCCccc
Confidence 88 999999999999999998543 455554
No 14
>PRK12351 methylcitrate synthase; Provisional
Probab=100.00 E-value=4.4e-55 Score=465.67 Aligned_cols=245 Identities=20% Similarity=0.187 Sum_probs=215.3
Q ss_pred cCCCCCCCCCCCCCCchhhhHHHHhcccCCcchhhhheeccCCCCcccCCCCCCcccccCCcHHHHHHHhhcCCCCChhH
Q 007327 320 EGKIPPVKEVTPPQIPEDLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYC 399 (608)
Q Consensus 320 ~G~~~~~~~~~~p~~~~~~~~~rllA~~p~i~A~~t~I~~~~g~~i~~~g~dl~~li~~~~~~~~~l~~l~~~~~~~~~~ 399 (608)
.+.++|+..+...... ..++++|+|++|+|++++|+..+ .++++.++..+++ +.+||++|+ +|++|++++
T Consensus 107 l~~~d~~~~~~~~~~~-~~~a~rliA~~p~i~a~~~r~~~-~~~~~~p~~~~ls-------~a~Nfl~ml-~g~~p~~~~ 176 (378)
T PRK12351 107 LGCLLPEKEDHNFSGA-RDIADRLLASLGSILLYWYHYSH-NGRRIEVETDDDS-------IGGHFLHLL-HGKKPSESW 176 (378)
T ss_pred hcccCcccccCChHHH-HHHHHHHHHHHHHHHHHHHHHHh-CCCccCCCCCcCC-------HHHHHHHHh-cCCCCCHHH
Confidence 3456665554444333 35689999999999999999533 2555555566677 889999998 788899999
Q ss_pred HHHHHHHHHHhcCCCCCCccchhhhhhccCCCChHHHHHHhhhcc-CCCCcCccHHHHHHHHHHhccCcCHHHHHHHHHH
Q 007327 400 TQFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKK 478 (608)
Q Consensus 400 ~~~l~~~lvl~aDHgl~~st~~aar~~aSt~a~~~~av~agl~a~-Gp~hGGa~~~a~~~l~~~~~~~~~~~~~v~~~l~ 478 (608)
.++||++||||||||+|+|| |++|+++||++|+|+|++||++++ ||+||||+|.|++||+++.+. ++++++|++.++
T Consensus 177 ~~~l~~~LvL~ADH~~naST-~aaRvvaSt~ad~~sav~agi~aL~GplHGGA~e~v~~ml~~i~~~-~~~~~~v~~~l~ 254 (378)
T PRK12351 177 VKAMHTSLILYAEHEFNAST-FTARVIAGTGSDMYSAITGAIGALRGPKHGGANEVAFEIQQRYDTP-DEAEADIRRRVE 254 (378)
T ss_pred HHHHHHHHHHhcccCCchHH-HHHHHHhccCCCHHHHHHHHHHhccCCccCchHHHHHHHHHHhCCH-HHHHHHHHHHHh
Confidence 99999999999999999999 999999999999999999999998 999999999999999999876 689999999999
Q ss_pred cCCCcCCCCCCCCCCCCCcHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHhhccCCcccchhhHHHHHHHHhcccCCC
Q 007327 479 KGIRVPGIGHRIKRGDNRDKRVELLQKFARTHF---PSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGM 555 (608)
Q Consensus 479 ~~~~ipGFGH~vy~~~~~DPRa~~L~~~~~~~~---~~~~~~~~a~~~e~~~~~~~~~l~~Nvd~~~a~l~~~lG~~~~~ 555 (608)
++++|||||||+||. .|||+++|+++++++. ..++++++++++|+++.+ .++++||||||+|+++++||||.++
T Consensus 255 ~~~~l~GFGHrvyk~--~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~ie~~~~~-~k~l~pNvD~ysg~l~~~lG~p~~~ 331 (378)
T PRK12351 255 NKEVVIGFGHPVYTI--SDPRNKVIKEVAKKLSKEAGDTKLYDIAERLETVMWE-EKKMFPNLDWFSAVSYHMMGVPTAM 331 (378)
T ss_pred CCCccccCCCCCCCC--CCccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH-HhCCCCChHHHHHHHHHHcCCCHHh
Confidence 999999999999985 5999999999999863 457899999999998764 6899999999999999999999999
Q ss_pred CChhhHHHHHhhhcchhhhHhhhhhhhhhhHHHhhhcC
Q 007327 556 FSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLK 593 (608)
Q Consensus 556 f~~~~~~~~~p~~~~~~lf~~~R~~G~iAH~~Eq~~~~ 593 (608)
||+ +|++||++||+|||+||+..+
T Consensus 332 ~t~--------------lF~~sR~~Gw~AH~~Eq~~~~ 355 (378)
T PRK12351 332 FTP--------------LFVISRTTGWAAHVIEQRQDN 355 (378)
T ss_pred hhh--------------HHHHHHHHHHHHHHHHHHhcC
Confidence 999 999999999999999998554
No 15
>cd06107 EcCS_AthCS-per_like Escherichia coli (Ec) citrate synthase (CS) gltA and Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the active site. Type II CSs are unique to gram-negative bacteria and are homohexamers of ide
Probab=100.00 E-value=6.2e-55 Score=465.56 Aligned_cols=238 Identities=20% Similarity=0.257 Sum_probs=215.9
Q ss_pred chhhhHHHHhcccCCcchhhhheeccCCCCcccCCCCCCcccccCCcHHHHHHHhhcCC-----CCChhHHHHHHHHHHH
Q 007327 335 PEDLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKR-----SLPRYCTQFIEICIML 409 (608)
Q Consensus 335 ~~~~~~~rllA~~p~i~A~~t~I~~~~g~~i~~~g~dl~~li~~~~~~~~~l~~l~~~~-----~~~~~~~~~l~~~lvl 409 (608)
..+..+++|+|++|+|+|++|+ ++.|++++.|+.+++ +.+|||+|+ ++. +|+++..++||++|||
T Consensus 126 ~~~~~~~~liA~~p~i~A~~yr--~~~g~~~~~P~~~ls-------~a~NFL~Ml-~g~~~~~~~p~~~~~~~l~~~LiL 195 (382)
T cd06107 126 VRDKQIIRTLAKMPTIAAAAYC--HRIGRPFVYPRANLS-------YIENFLYMM-GYVDQEPYEPNPRLARALDRLWIL 195 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HhCCCCCCCCCCCCC-------HHHHHHHHh-cCCCcCCCCCCHHHHHHHHHHHHH
Confidence 3346779999999999999999 778999999999998 899999999 554 3788899999999999
Q ss_pred hcCCCCCCccchhhhhhccCCCChHHHHHHhhhcc-CCCCcCccHHHHHHHHHHhccCcCHHHHHHHHHHcCCCcCCCCC
Q 007327 410 CADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGH 488 (608)
Q Consensus 410 ~aDHgl~~st~~aar~~aSt~a~~~~av~agl~a~-Gp~hGGa~~~a~~~l~~~~~~~~~~~~~v~~~l~~~~~ipGFGH 488 (608)
|||||+|+|| |++|+++||++|+|+|++||++++ ||+||||+++|++||+++.+. ++++++|++.++++++||||||
T Consensus 196 ~aDHg~n~ST-~aaRv~aSt~ad~~s~v~aai~al~GplHGGA~e~v~~~l~ei~~~-~~~~~~v~~~~~~~~ri~GFGH 273 (382)
T cd06107 196 HADHEMNCST-SAARHTGSSLADPISCMAAAIAALYGPLHGGANEAALKMLREIGTP-ENVPAFIERVKNGKRRLMGFGH 273 (382)
T ss_pred hcccCCcchh-HHHHHHHhcCCcHHHHHHHHHhhccCCcccchHHHHHHHHHHhCCh-HHHHHHHHHHHhcCCCcCCCCC
Confidence 9999999999 999999999999999999999998 999999999999999999876 6899999999999999999999
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHhhc----cCCcccchhhHHHHHHHHhcccCCCCChhhH
Q 007327 489 RIKRGDNRDKRVELLQKFARTHF---PSVKYMEYAVQVETYTLSK----ANNLVLNVDGAIGSLFLDLLAGSGMFSKQEI 561 (608)
Q Consensus 489 ~vy~~~~~DPRa~~L~~~~~~~~---~~~~~~~~a~~~e~~~~~~----~~~l~~Nvd~~~a~l~~~lG~~~~~f~~~~~ 561 (608)
|+||. .|||+++|+++++++. ..++++++++++|+++.++ .|+++||||||+|+++++||||+++||+
T Consensus 274 rvyk~--~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~ie~~~~~~~~~~~k~l~pNvD~~sa~~~~~lG~p~~~~t~--- 348 (382)
T cd06107 274 RVYKN--YDPRAKVIREILHEVLTEVEKDPLLKVAMELERIALEDEYFVSRKLYPNVDFYSGFIYKALGFPPEFFTV--- 348 (382)
T ss_pred CCCCC--CCccHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhhhccCCCCcChHHHHHHHHHHcCCChhhhhH---
Confidence 99985 5999999999999875 3579999999999975432 5999999999999999999999999999
Q ss_pred HHHHhhhcchhhhHhhhhhhhhhhHHHhhhcC-CCCCCCC
Q 007327 562 DEIVEIGYLNGLFVLARSIGLIGHTFDQKRLK-QPLYRHP 600 (608)
Q Consensus 562 ~~~~p~~~~~~lf~~~R~~G~iAH~~Eq~~~~-~p~~~~~ 600 (608)
+|++||++||+|||+||+..+ ..+.|+.
T Consensus 349 -----------lf~~sR~~Gw~AH~~Eq~~~~~~~i~RP~ 377 (382)
T cd06107 349 -----------LFAVARTSGWMAHWREMMEDPLQRIWRPR 377 (382)
T ss_pred -----------HHHHHHHHHHHHHHHHHHhCCCCceeCcc
Confidence 999999999999999998664 3455553
No 16
>TIGR01798 cit_synth_I citrate synthase I (hexameric type). This model describes one of several distinct but closely homologous classes of citrate synthase, the protein that brings carbon (from acetyl-CoA) into the TCA cycle. This form, class I, is known to be hexameric and allosterically inhibited by NADH in Escherichia coli, Acinetobacter anitratum, Azotobacter vinelandii, Pseudomonas aeruginosa, etc. In most species with a class I citrate synthase, a dimeric class II isozyme is found. The class II enzyme may act primarily on propionyl-CoA to make 2-methylcitrate or be bifunctional, may be found among propionate utilization enzymes, and may be constitutive or induced by propionate. Some members of this model group as class I enzymes, and may be hexameric, but have shown regulatory properties more like class II enzymes.
Probab=100.00 E-value=2.2e-54 Score=464.37 Aligned_cols=236 Identities=20% Similarity=0.328 Sum_probs=212.6
Q ss_pred hhhhHHHHhcccCCcchhhhheeccCCCCcccCCCCCCcccccCCcHHHHHHHhhcCC-----CCChhHHHHHHHHHHHh
Q 007327 336 EDLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKR-----SLPRYCTQFIEICIMLC 410 (608)
Q Consensus 336 ~~~~~~rllA~~p~i~A~~t~I~~~~g~~i~~~g~dl~~li~~~~~~~~~l~~l~~~~-----~~~~~~~~~l~~~lvl~ 410 (608)
.+.++++|+|++|+|+|++|+ ++.|++++.|+.+++ +.+||++|+ +|. +|+++++++||++||||
T Consensus 147 ~~~~a~~liA~~p~i~A~~yr--~~~g~~~i~p~~~ls-------~a~Nfl~Ml-~g~~~~~~~p~~~~~~~l~~~LiL~ 216 (412)
T TIGR01798 147 REIAAIRLIAKIPTLAAMSYK--YSIGQPFVYPRNDLS-------YAENFLHMM-FATPCEDYKVNPVLARAMDRIFILH 216 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HhCCCCCcCCCCCCC-------HHHHHHHHh-cCCCCccCCCCHHHHHHHHHHHHHh
Confidence 346789999999999999999 788999999999998 899999999 675 67888999999999999
Q ss_pred cCCCCCCccchhhhhhccCCCChHHHHHHhhhcc-CCCCcCccHHHHHHHHHHhccCcCHHHHHHHHHHcC--CCcCCCC
Q 007327 411 ADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKG--IRVPGIG 487 (608)
Q Consensus 411 aDHgl~~st~~aar~~aSt~a~~~~av~agl~a~-Gp~hGGa~~~a~~~l~~~~~~~~~~~~~v~~~l~~~--~~ipGFG 487 (608)
||||+|+|| |++|+++||++|+|+|++|||+++ ||+||||+++|++||+++.+. +++++||++.++++ ++|||||
T Consensus 217 aDHg~n~ST-faaRv~aSt~ad~ysav~agi~aL~GplHGGA~e~v~~ml~ei~~~-~~~~~~v~~~~~~~~~~~i~GFG 294 (412)
T TIGR01798 217 ADHEQNAST-STVRLAGSSGANPFACIAAGIAALWGPAHGGANEAALKMLEEIGSV-KNIPEFIKKVKDKNDPFRLMGFG 294 (412)
T ss_pred hcCCCCccc-ceeeeeecCCCCHHHHHHHHhhhccCccccchHHHHHHHHHHhCCh-hHHHHHHHHHHhcCCCccccCCC
Confidence 999999999 999999999999999999999998 999999999999999999876 68999999999888 4999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHhh----ccCCcccchhhHHHHHHHHhcccCCCCCh
Q 007327 488 HRIKRGDNRDKRVELLQKFARTHF-----PSVKYMEYAVQVETYTLS----KANNLVLNVDGAIGSLFLDLLAGSGMFSK 558 (608)
Q Consensus 488 H~vy~~~~~DPRa~~L~~~~~~~~-----~~~~~~~~a~~~e~~~~~----~~~~l~~Nvd~~~a~l~~~lG~~~~~f~~ 558 (608)
||+||. .|||+++|+++++++. ..++++++++++|+++.+ .+|+++||||||+|+++++||||.++||+
T Consensus 295 Hrvyk~--~DPRa~~L~~~a~~l~~~~g~~~~~~~~~a~~~e~~~~~~~~~~~k~l~pNvD~~sa~l~~~lG~p~~~~t~ 372 (412)
T TIGR01798 295 HRVYKN--YDPRAKVMRETCHEVLKELGLHDDPLFKLAMELEKIALNDPYFIERKLYPNVDFYSGIILKAMGIPTSMFTV 372 (412)
T ss_pred CCCCCC--CCccHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHhhhhhccCCCCcChHHHHHHHHHHcCCChhhhhh
Confidence 999985 5999999999988752 247899999999996543 25999999999999999999999999999
Q ss_pred hhHHHHHhhhcchhhhHhhhhhhhhhhHHHhhhcC-CCCCCC
Q 007327 559 QEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLK-QPLYRH 599 (608)
Q Consensus 559 ~~~~~~~p~~~~~~lf~~~R~~G~iAH~~Eq~~~~-~p~~~~ 599 (608)
+|+++|++||+|||+||+..+ .++.|+
T Consensus 373 --------------lFaisR~~Gw~AH~~Eq~~~~~~~l~RP 400 (412)
T TIGR01798 373 --------------IFALARTVGWISHWSEMISDPGQKIGRP 400 (412)
T ss_pred --------------HHHHHhhhhHHHHHHHHHhCCCCcccCc
Confidence 999999999999999998643 234444
No 17
>PRK14036 citrate synthase; Provisional
Probab=100.00 E-value=2.1e-54 Score=461.22 Aligned_cols=249 Identities=20% Similarity=0.284 Sum_probs=221.2
Q ss_pred CCCCCCCCCCCCCchhhhHHHHhcccCCcchhhhheeccCCCCcccCCCCCCcccccCCcHHHHHHHhhcCCCCChhHHH
Q 007327 322 KIPPVKEVTPPQIPEDLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQ 401 (608)
Q Consensus 322 ~~~~~~~~~~p~~~~~~~~~rllA~~p~i~A~~t~I~~~~g~~i~~~g~dl~~li~~~~~~~~~l~~l~~~~~~~~~~~~ 401 (608)
.++|+.++..+. ...+++++|+|++|+|++++++ .+.|++++.|+.+++ +.+||++|+ +|++|++.+.+
T Consensus 105 ~~~~~~~~~~~~-~~~~~~~rliA~~p~i~a~~~r--~~~g~~~~~p~~~l~-------~a~nfl~ml-~g~~p~~~~~~ 173 (377)
T PRK14036 105 LFYSRRALDDPE-YIRDAVVRLIAKIPTMVAAFQL--IRKGNDPIQPRDDLD-------YAANFLYML-TEREPDPLAAR 173 (377)
T ss_pred hcCcccccCCHH-HHHHHHHHHHHHHHHHHHHHHH--HHCCCCCCCCCCCCC-------HHHHHHHHh-cCCCCCHHHHH
Confidence 355554444443 3347789999999999999998 678888889999888 888999888 78889999999
Q ss_pred HHHHHHHHhcCCCCCCccchhhhhhccCCCChHHHHHHhhhcc-CCCCcCccHHHHHHHHHHhccCcCHHHHHHHHHHcC
Q 007327 402 FIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKG 480 (608)
Q Consensus 402 ~l~~~lvl~aDHgl~~st~~aar~~aSt~a~~~~av~agl~a~-Gp~hGGa~~~a~~~l~~~~~~~~~~~~~v~~~l~~~ 480 (608)
+||++||||||||+|+|| |++|+++||++|+|+|++||++++ ||+||||+|.|++||+++.+. +++++||++.++++
T Consensus 174 ~l~~~Lil~ADHg~naST-~aaRv~aSt~ad~ys~v~agi~aL~GplHGGA~e~v~~ml~~i~~~-~~~~~~v~~~~~~~ 251 (377)
T PRK14036 174 IFDRCLILHAEHTINAST-FSARVTASTLTDPYAVIASAVGTLAGPLHGGANEDVLAMLEEIGSV-ENVRPYLDERLANK 251 (377)
T ss_pred HHHHHHhhhccCCCCchH-HHHHHHHhcCCcHHHHHHHHHHHccCccccChHHHHHHHHHHhCCh-hhHHHHHHHHHHCC
Confidence 999999999999999999 999999999999999999999998 999999999999999999876 68999999999999
Q ss_pred CCcCCCCCCCCCCCCCcHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHhhc--cCCcccchhhHHHHHHHHhcccCCC
Q 007327 481 IRVPGIGHRIKRGDNRDKRVELLQKFARTHF---PSVKYMEYAVQVETYTLSK--ANNLVLNVDGAIGSLFLDLLAGSGM 555 (608)
Q Consensus 481 ~~ipGFGH~vy~~~~~DPRa~~L~~~~~~~~---~~~~~~~~a~~~e~~~~~~--~~~l~~Nvd~~~a~l~~~lG~~~~~ 555 (608)
++|||||||+||. .|||+++|+++++++. ..++++++++++|+++.+. .|+++||||||+|+++++||||+++
T Consensus 252 ~~i~GFGHrvyk~--~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~~e~~~~~~~~~k~l~pNvD~~sa~l~~~lGip~~~ 329 (377)
T PRK14036 252 QKIMGFGHREYKV--KDPRATILQKLAEELFARFGHDEYYEIALELERVAEERLGPKGIYPNVDFYSGLVYRKLGIPRDL 329 (377)
T ss_pred CceecCCCCCCCC--CCccHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccCCCCcChHHHHHHHHHHcCCChhh
Confidence 9999999999985 5999999999999873 4688999999999988542 5889999999999999999999999
Q ss_pred CChhhHHHHHhhhcchhhhHhhhhhhhhhhHHHhhhcC---CCCCCC
Q 007327 556 FSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLK---QPLYRH 599 (608)
Q Consensus 556 f~~~~~~~~~p~~~~~~lf~~~R~~G~iAH~~Eq~~~~---~p~~~~ 599 (608)
||+ +|++||++||+|||+||+..+ ||...+
T Consensus 330 ~t~--------------lf~~sR~~Gw~AH~~Eq~~~~~l~RP~~~Y 362 (377)
T PRK14036 330 FTP--------------IFAIARVAGWLAHWREQLGANRIFRPTQIY 362 (377)
T ss_pred hhh--------------HHHHHhHHHHHHHHHHHHhcCcccCCCcee
Confidence 999 999999999999999998543 455444
No 18
>PRK14034 citrate synthase; Provisional
Probab=100.00 E-value=2.9e-54 Score=458.98 Aligned_cols=242 Identities=18% Similarity=0.263 Sum_probs=218.2
Q ss_pred CCCCCCCCCCCCCCchhhhHHHHhcccCCcchhhhheeccCCCCcccCCCCCCcccccCCcHHHHHHHhhcCCCCChhHH
Q 007327 321 GKIPPVKEVTPPQIPEDLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCT 400 (608)
Q Consensus 321 G~~~~~~~~~~p~~~~~~~~~rllA~~p~i~A~~t~I~~~~g~~i~~~g~dl~~li~~~~~~~~~l~~l~~~~~~~~~~~ 400 (608)
+.+++...+..+. ....++++|+|++|+|+++.++ +..|++++.|+.+++ +.+||++|+ +|++|++.++
T Consensus 102 ~~~~~~~~~~~~~-~~~~~a~~liA~~p~i~a~~~r--~~~g~~~~~p~~~ls-------~a~nfl~ml-~g~~p~~~~~ 170 (372)
T PRK14034 102 GLYDEEAEIMDEE-ANYRKAVRLQAKVPTIVAAFSR--IRKGLDPVEPRKDLS-------LAANFLYML-NGEEPDEVEV 170 (372)
T ss_pred cccCcccccCCHH-HHHHHHHHHHHHHHHHHHHHHH--HHCCCCCCCCCCCCC-------HHHHHHHHh-cCCCCCHHHH
Confidence 3455554444333 2347889999999999999988 778888999999988 888999888 7888999999
Q ss_pred HHHHHHHHHhcCCCCCCccchhhhhhccCCCChHHHHHHhhhcc-CCCCcCccHHHHHHHHHHhccCcCHHHHHHHHHHc
Q 007327 401 QFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKK 479 (608)
Q Consensus 401 ~~l~~~lvl~aDHgl~~st~~aar~~aSt~a~~~~av~agl~a~-Gp~hGGa~~~a~~~l~~~~~~~~~~~~~v~~~l~~ 479 (608)
++||++|||+||||+|+|| |++|+++||++|+|+|++||++++ ||+||||++.|++||+++.+. ++++++|++.+++
T Consensus 171 ~~l~~~Lvl~aDHg~n~ST-~aaRv~aSt~~d~ysav~agi~al~GplHGGA~e~~~~~l~~i~~~-~~~~~~v~~~~~~ 248 (372)
T PRK14034 171 EAFNKALVLHADHELNAST-FTARVCVATLSDVYSGITAAIGALKGPLHGGANENVMKMLTEIGEE-ENVESYIHNKLQN 248 (372)
T ss_pred HHHHHHHhHhccCCCCccH-HHHHHHhccCCcHHHHHHHHhcccCCCccCCHHHHHHHHHHHhCCH-HHHHHHHHHHHhC
Confidence 9999999999999999999 999999999999999999999997 999999999999999999876 6899999999999
Q ss_pred CCCcCCCCCCCCCCCCCcHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHhhccCCcccchhhHHHHHHHHhcccCCCC
Q 007327 480 GIRVPGIGHRIKRGDNRDKRVELLQKFARTHF---PSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMF 556 (608)
Q Consensus 480 ~~~ipGFGH~vy~~~~~DPRa~~L~~~~~~~~---~~~~~~~~a~~~e~~~~~~~~~l~~Nvd~~~a~l~~~lG~~~~~f 556 (608)
+++|||||||+||. .|||+++|+++++++. ..++++++++++|+++.+ .++++||||||+|+++++||||.++|
T Consensus 249 ~~~l~GFGHrvyk~--~DPRa~~L~~~~~~~~~~~~~~~~~~~a~~~e~~~~~-~k~l~pNvD~~~a~l~~~lG~p~~~~ 325 (372)
T PRK14034 249 KEKIMGFGHRVYRQ--GDPRAKHLREMSKRLTVLLGEEKWYNMSIKIEEIVTK-EKGLPPNVDFYSASVYHCLGIDHDLF 325 (372)
T ss_pred CCCcccCCCCCCCC--CCcCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH-cCCCCCChHHHHHHHHHHcCCChHhc
Confidence 99999999999985 5999999999999874 457999999999998754 68999999999999999999999999
Q ss_pred ChhhHHHHHhhhcchhhhHhhhhhhhhhhHHHhhhc
Q 007327 557 SKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRL 592 (608)
Q Consensus 557 ~~~~~~~~~p~~~~~~lf~~~R~~G~iAH~~Eq~~~ 592 (608)
|+ +|++||++||+|||+||+..
T Consensus 326 t~--------------lf~i~R~~Gw~AH~~Eq~~~ 347 (372)
T PRK14034 326 TP--------------IFAISRMSGWLAHILEQYEN 347 (372)
T ss_pred cc--------------hhHHHhHHHHHHHHHHHHhc
Confidence 88 99999999999999999853
No 19
>cd06108 Ec2MCS_like Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like. 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxalacetate (OAA) to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and OAA to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group contains proteins similar to the E. coli 2MCS, EcPrpC. EcPrpC is one of two CS isozymes in the gram-negative E. coli. EcPrpC is a dimeric (type I ) CS; it is induced during growth on propionate and prefers PrCoA as a substrate though it has partial CS activity with AcCoA. This group also includes Salmonella typhimurium PrpC and Ralstonia eutropha (Re) 2-MCS1 which are also induced during growth on propionate and prefer PrCoA as substrate, but can also use AcCoA. Re 2-MCS1 can use butyryl-CoA and valeryl-CoA at a lower rate. A second Ralstonia eutropha 2MC
Probab=100.00 E-value=4e-54 Score=456.57 Aligned_cols=229 Identities=18% Similarity=0.191 Sum_probs=208.2
Q ss_pred hhhHHHHhcccCCcchhhhheeccCCCCcccCCCCCCcccccCCcHHHHHHHhhcCCCCChhHHHHHHHHHHHhcCCCCC
Q 007327 337 DLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPC 416 (608)
Q Consensus 337 ~~~~~rllA~~p~i~A~~t~I~~~~g~~i~~~g~dl~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHgl~ 416 (608)
..++++|+|++|+|++++|++. ..++++..+..+++ +.+||++|+ +|++|++++.++||++|||+||||+|
T Consensus 111 ~~~a~rlia~~p~i~a~~~r~~-~~~~~~~p~~~~~s-------~a~nfl~ml-~g~~p~~~~~~~l~~~LvL~ADH~~n 181 (363)
T cd06108 111 YEIAIRLLAIFPSILLYWYHYS-HSGKRIETETDEDS-------IAGHFLHLL-HGKKPGELEIKAMDVSLILYAEHEFN 181 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-cCCCccCCCCCCCC-------HHHHHHHHh-cCCCCCHHHHHHHHHHhhhhccCCCc
Confidence 4788999999999999999943 23455555567777 788999998 78889999999999999999999999
Q ss_pred CccchhhhhhccCCCChHHHHHHhhhcc-CCCCcCccHHHHHHHHHHhccCcCHHHHHHHHHHcCCCcCCCCCCCCCCCC
Q 007327 417 VSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGDN 495 (608)
Q Consensus 417 ~st~~aar~~aSt~a~~~~av~agl~a~-Gp~hGGa~~~a~~~l~~~~~~~~~~~~~v~~~l~~~~~ipGFGH~vy~~~~ 495 (608)
+|| |++|+++||++|+|+|++||++++ ||+||||+++|++||+++.+. ++++++|++.++++++|||||||+||.
T Consensus 182 ~St-~aaRv~aSt~ad~~sav~agi~al~GplHGGA~e~v~~~l~~i~~~-~~~~~~v~~~l~~~~~i~GFGHrvyk~-- 257 (363)
T cd06108 182 AST-FAARVTASTLSDFYSAITGAIGTLRGPLHGGANEAAMELIERFKSP-EEAEQGLLEKLERKELIMGFGHRVYKE-- 257 (363)
T ss_pred chH-HHHHHHhccCCCHHHHHHHHHHhccCCcccchHHHHHHHHHHhCCH-HHHHHHHHHHHhcCCeecCCCCCCCCC--
Confidence 999 999999999999999999999998 999999999999999999876 689999999999999999999999985
Q ss_pred CcHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHhhccCCcccchhhHHHHHHHHhcccCCCCChhhHHHHHhhhcchh
Q 007327 496 RDKRVELLQKFARTHF---PSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNG 572 (608)
Q Consensus 496 ~DPRa~~L~~~~~~~~---~~~~~~~~a~~~e~~~~~~~~~l~~Nvd~~~a~l~~~lG~~~~~f~~~~~~~~~p~~~~~~ 572 (608)
.|||++.|+++++++. ..++++++++++|+++.+ .++++||||||+|+++++||||.++||+
T Consensus 258 ~DPRa~~L~~~a~~l~~~~~~~~~~~~a~~ie~~~~~-~~~l~pNvD~~sa~l~~~lG~p~~~~t~-------------- 322 (363)
T cd06108 258 GDPRSDIIKKWSKKLSEEGGDPLLYQISERIEEVMWE-EKKLFPNLDFYSASAYHFCGIPTELFTP-------------- 322 (363)
T ss_pred CCccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH-hcCCCcChHHHHHHHHHHcCCChhhhhh--------------
Confidence 5999999999998763 568999999999998764 6999999999999999999999999988
Q ss_pred hhHhhhhhhhhhhHHHhhhcC
Q 007327 573 LFVLARSIGLIGHTFDQKRLK 593 (608)
Q Consensus 573 lf~~~R~~G~iAH~~Eq~~~~ 593 (608)
+|++||++||+|||+||+..+
T Consensus 323 iF~i~R~~Gw~AH~~Eq~~~~ 343 (363)
T cd06108 323 IFVMSRVTGWAAHIMEQRANN 343 (363)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999998544
No 20
>cd06117 Ec2MCS_like_1 Subgroup of Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like. 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxalacetate (OAA) to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and OAA to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group contains proteins similar to the E. coli 2MCS, EcPrpC. EcPrpC is one of two CS isozymes in the gram-negative E. coli. EcPrpC is a dimeric (type I ) CS; it is induced during growth on propionate and prefers PrCoA as a substrate, but has a partial CS activity with AcCoA. This group also includes Salmonella typhimurium PrpC and Ralstonia eutropha (Re) 2-MCS1 which are also induced during growth on propionate, prefer PrCoA as substrate, but can also can use AcCoA. Re 2-MCS1 at a low rate can use butyryl-CoA and valeryl-CoA. A second Ralstonia eu
Probab=100.00 E-value=5.1e-54 Score=456.63 Aligned_cols=244 Identities=21% Similarity=0.214 Sum_probs=212.4
Q ss_pred CCCCCCCCCCCCCCchhhhHHHHhcccCCcchhhhheeccCCCCcccCCCCCCcccccCCcHHHHHHHhhcCCCCChhHH
Q 007327 321 GKIPPVKEVTPPQIPEDLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCT 400 (608)
Q Consensus 321 G~~~~~~~~~~p~~~~~~~~~rllA~~p~i~A~~t~I~~~~g~~i~~~g~dl~~li~~~~~~~~~l~~l~~~~~~~~~~~ 400 (608)
+.++|...+....... ..+++|+|++|+|++++|+.. +.++++..+..+++ +.+||++|+ +|++|++.+.
T Consensus 99 ~~~~~~~~~~~~~~~~-~~a~rlia~~p~i~a~~~r~~-~~~~~i~p~~~~~s-------~a~Nfl~ml-~g~~p~~~~~ 168 (366)
T cd06117 99 GCVLPEKEDHPVSGAR-DIADRLMASLGSILLYWYHYS-HNGKRIEVETDDDS-------IGGHFLHLL-HGEKPSESWE 168 (366)
T ss_pred cccCcccccCChHHHH-HHHHHHHHHHHHHHHHHHHHh-cCCCccCCCCCcCC-------HHHHHHHHh-cCCCCCHHHH
Confidence 3455554443333332 568899999999999999932 23444444455677 889999998 7888999999
Q ss_pred HHHHHHHHHhcCCCCCCccchhhhhhccCCCChHHHHHHhhhcc-CCCCcCccHHHHHHHHHHhccCcCHHHHHHHHHHc
Q 007327 401 QFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKK 479 (608)
Q Consensus 401 ~~l~~~lvl~aDHgl~~st~~aar~~aSt~a~~~~av~agl~a~-Gp~hGGa~~~a~~~l~~~~~~~~~~~~~v~~~l~~ 479 (608)
++||++|||+||||+|+|| |++|+++||++|+|+|++||++++ ||+||||+|.|++||+++.+. ++++++|++.+++
T Consensus 169 ~~l~~~LvL~ADHg~n~ST-~aarv~aSt~ad~~sav~agi~aL~GplHGGA~e~v~~~l~~i~~~-~~~~~~i~~~~~~ 246 (366)
T cd06117 169 KAMHISLILYAEHEFNAST-FTARVIAGTGSDMYSAITGAIGALRGPKHGGANEVAFEIQQRYESA-DEAEADIRRRVEN 246 (366)
T ss_pred HHHHHHHHHhcccCCchHH-HHHHHHHccCCcHHHHHHHHHHhccCCccCchHHHHHHHHHHhCCH-HHHHHHHHHHHhc
Confidence 9999999999999999999 999999999999999999999998 999999999999999999876 6899999999999
Q ss_pred CCCcCCCCCCCCCCCCCcHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHhhccCCcccchhhHHHHHHHHhcccCCCC
Q 007327 480 GIRVPGIGHRIKRGDNRDKRVELLQKFARTHF---PSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMF 556 (608)
Q Consensus 480 ~~~ipGFGH~vy~~~~~DPRa~~L~~~~~~~~---~~~~~~~~a~~~e~~~~~~~~~l~~Nvd~~~a~l~~~lG~~~~~f 556 (608)
+++|||||||+||. .|||+++|+++++++. ...+++++++++|+++.+ .|+++||||||+|+++++||||.++|
T Consensus 247 ~~~i~GFGHrvyk~--~DPRa~~L~~~~~~l~~~~~~~~~~~~~~~ie~~~~~-~k~l~pNvD~~s~~l~~~lG~p~~~~ 323 (366)
T cd06117 247 KEVVIGFGHPVYTI--ADPRNQVIKEVAKQLSKEGGDMKMFDIAERLETVMWE-EKKMFPNLDWFSAVSYHMMGVPTAMF 323 (366)
T ss_pred CCcccCCCCCCCCC--CCchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH-HhCCCcCcHHHHHHHHHHcCcChhhh
Confidence 99999999999985 5999999999999874 346889999999998754 68999999999999999999999999
Q ss_pred ChhhHHHHHhhhcchhhhHhhhhhhhhhhHHHhhhcC
Q 007327 557 SKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLK 593 (608)
Q Consensus 557 ~~~~~~~~~p~~~~~~lf~~~R~~G~iAH~~Eq~~~~ 593 (608)
|+ +|++||++||+|||+||+..+
T Consensus 324 t~--------------lf~isR~~Gw~AH~~Eq~~~~ 346 (366)
T cd06117 324 TP--------------LFVIARTTGWSAHIIEQRQDG 346 (366)
T ss_pred hH--------------HHHHHHHHHHHHHHHHHHhcC
Confidence 99 999999999999999998654
No 21
>PRK05614 gltA type II citrate synthase; Reviewed
Probab=100.00 E-value=6.7e-54 Score=462.12 Aligned_cols=250 Identities=20% Similarity=0.287 Sum_probs=216.3
Q ss_pred CCCCCCCCCCCCCchhhhHHHHhcccCCcchhhhheeccCCCCcccCCCCCCcccccCCcHHHHHHHhhcCC-----CCC
Q 007327 322 KIPPVKEVTPPQIPEDLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKR-----SLP 396 (608)
Q Consensus 322 ~~~~~~~~~~p~~~~~~~~~rllA~~p~i~A~~t~I~~~~g~~i~~~g~dl~~li~~~~~~~~~l~~l~~~~-----~~~ 396 (608)
.+++...+.......+.++++|+|++|+|+|++|+ ++.|+++++|+.+++ +.+||++|+ +|. +++
T Consensus 146 ~~~~~~~~~~~~~~~~~~a~rlia~~p~i~A~~~r--~~~g~~~~~p~~~ls-------~a~nfl~ml-~g~~~~~~~~~ 215 (419)
T PRK05614 146 AFYHDSLDINDPEHREIAAIRLIAKMPTLAAMAYK--YSIGQPFVYPRNDLS-------YAENFLRMM-FATPCEEYEVN 215 (419)
T ss_pred hcCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HhCCCCCCCCCCccC-------HHHHHHHHH-hCCCCccCCCC
Confidence 34443333222234446689999999999999999 788999999999998 899999999 565 567
Q ss_pred hhHHHHHHHHHHHhcCCCCCCccchhhhhhccCCCChHHHHHHhhhcc-CCCCcCccHHHHHHHHHHhccCcCHHHHHHH
Q 007327 397 RYCTQFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVES 475 (608)
Q Consensus 397 ~~~~~~l~~~lvl~aDHgl~~st~~aar~~aSt~a~~~~av~agl~a~-Gp~hGGa~~~a~~~l~~~~~~~~~~~~~v~~ 475 (608)
+...++||++||||||||+|+|| |++|+++||++|+|+|++|||+++ ||+||||++.|++||+++.+. ++++++|++
T Consensus 216 ~~~~~~ld~~LiL~ADH~~n~ST-fa~RvvaSt~adlysav~agi~aL~GplHGGA~e~v~~~l~~i~~~-~~~~~~i~~ 293 (419)
T PRK05614 216 PVLVRALDRIFILHADHEQNAST-STVRLAGSSGANPFACIAAGIAALWGPAHGGANEAVLKMLEEIGSV-DNIPEFIAR 293 (419)
T ss_pred HHHHHHHHHHHhhhccCCCCcch-HHHhhhhccCCCHHHHHHHHHhhcCCCcccChHHHHHHHHHHhCCc-hhHHHHHHH
Confidence 78899999999999999999999 999999999999999999999998 999999999999999999876 689999999
Q ss_pred HHHc--CCCcCCCCCCCCCCCCCcHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHhhc----cCCcccchhhHHHHH
Q 007327 476 MKKK--GIRVPGIGHRIKRGDNRDKRVELLQKFARTH----FPSVKYMEYAVQVETYTLSK----ANNLVLNVDGAIGSL 545 (608)
Q Consensus 476 ~l~~--~~~ipGFGH~vy~~~~~DPRa~~L~~~~~~~----~~~~~~~~~a~~~e~~~~~~----~~~l~~Nvd~~~a~l 545 (608)
.+++ +++|||||||+||. .|||+++|+++++++ ...++++++++++|+++.++ +++++||||||+|++
T Consensus 294 ~~~~~~~~~i~GFGHrvyk~--~DPRa~~l~~~a~~l~~~~~~~~~~~~ia~~ie~~~~~~~~~~~r~l~pNvD~~s~~l 371 (419)
T PRK05614 294 AKDKNDGFRLMGFGHRVYKN--YDPRAKIMRETCHEVLKELGLNDPLLEVAMELEEIALNDEYFIERKLYPNVDFYSGII 371 (419)
T ss_pred HHhccCCccccCCCCCCCCC--CCCCHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhhhhccCCCCcChHHHHHHH
Confidence 9764 55999999999985 599999999999865 33788999999999975433 599999999999999
Q ss_pred HHHhcccCCCCChhhHHHHHhhhcchhhhHhhhhhhhhhhHHHhhhc-CCCCCCC
Q 007327 546 FLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRL-KQPLYRH 599 (608)
Q Consensus 546 ~~~lG~~~~~f~~~~~~~~~p~~~~~~lf~~~R~~G~iAH~~Eq~~~-~~p~~~~ 599 (608)
+++||||.++||+ +|+++|++||+|||+||++. ...+.|+
T Consensus 372 ~~~lG~p~~~~t~--------------lFa~~R~~Gw~AH~~Eq~~~~~~~iiRP 412 (419)
T PRK05614 372 LKALGIPTSMFTV--------------IFALARTVGWIAHWNEMHSDPEQKIGRP 412 (419)
T ss_pred HHHcCcChhhhcc--------------hHHhHhHHHHHHHHHHHHhccCCcccCC
Confidence 9999999999999 99999999999999999864 2244444
No 22
>cd06101 citrate_synt Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the
Probab=100.00 E-value=3.7e-54 Score=440.62 Aligned_cols=233 Identities=23% Similarity=0.330 Sum_probs=209.6
Q ss_pred CcchhhhheeccCCC--CcccCCCCCCcccccCCcHHHHHHHhhcCCCC---------------ChhHHHHHHHHHHHhc
Q 007327 349 APTHIISTISDDRGE--EPCYAGVPMSSIVEQGYGVGDVISLLWFKRSL---------------PRYCTQFIEICIMLCA 411 (608)
Q Consensus 349 ~i~A~~t~I~~~~g~--~i~~~g~dl~~li~~~~~~~~~l~~l~~~~~~---------------~~~~~~~l~~~lvl~a 411 (608)
.+.+..|+||..+++ .++|||||+.||+++. +|++++|+||+|+.| +++++++||++||+++
T Consensus 5 ~~~~~~t~is~id~~~g~l~yRGy~i~dL~~~~-~f~ev~~LL~~G~lP~~~~nfl~m~~g~~p~~~~~~~l~~~Lvl~a 83 (265)
T cd06101 5 GVAALESEISVIDGDEGGLRYRGYPIEELAENS-SFEEVAYLLLTGELPSYAENFLYMLGGEEPDPEFAKAMDLALILHA 83 (265)
T ss_pred CcceeeeEEEEEeCCCCEEEECCeeHHHHHhcC-CHHHHHHHHHcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHhhhc
Confidence 345667888877666 5999999999999988 999999999988765 6789999999999999
Q ss_pred CCCCCCccchhhhhhccCCCChHHHHHHhhhcc-CCCCcCccHHHHHHHHHHhcc-CcCHHHHHHHHHHcCCCcCCCCCC
Q 007327 412 DHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDR-GLSAYEFVESMKKKGIRVPGIGHR 489 (608)
Q Consensus 412 DHgl~~st~~aar~~aSt~a~~~~av~agl~a~-Gp~hGGa~~~a~~~l~~~~~~-~~~~~~~v~~~l~~~~~ipGFGH~ 489 (608)
|||+|+|| |++|+++||++|+|+|++|||+++ ||+||||+++|++||+++.+. .++++++|.+.++++++|||||||
T Consensus 84 DHg~naST-~aaRv~aSt~ad~~~av~agl~al~Gp~HGGA~e~~~~~l~~i~~~~~~~~~~~v~~~~~~~~~i~GFGH~ 162 (265)
T cd06101 84 DHEGNAST-FTARVVGSTLSDPYSAIAAAIAALKGPLHGGANEAVLKMLEEIGTPKNEPAEAYIRKKLNSKRVLMGFGHR 162 (265)
T ss_pred CCCCchHH-HHHHHHHccCCcHHHHHHHHHHhCCCCCcCCHHHHHHHHHHHhCccccccHHHHHHHHHhcCCCccCCCCC
Confidence 99999999 999999999999999999999998 999999999999999999764 147899999999999999999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHhhc--cCCcccchhhHHHHHHHHhcccCCCCChhhHHHH
Q 007327 490 IKRGDNRDKRVELLQKFARTHFP---SVKYMEYAVQVETYTLSK--ANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEI 564 (608)
Q Consensus 490 vy~~~~~DPRa~~L~~~~~~~~~---~~~~~~~a~~~e~~~~~~--~~~l~~Nvd~~~a~l~~~lG~~~~~f~~~~~~~~ 564 (608)
+|+. .|||++.|+++++++.. .++++++++++|+++.+. .|+++||||||+|+++++||||+++|++
T Consensus 163 vy~~--~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~~e~~~~~~~~~k~l~pNvd~~~a~v~~~lG~p~~~~~~------ 234 (265)
T cd06101 163 VYKK--YDPRATVLKKFAEKLLKEKGLDPMFELAAELEKIAPEVLYEKKLYPNVDFYSGVLYKAMGFPTELFTP------ 234 (265)
T ss_pred CCCC--CCCChHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHhCCChHhhhh------
Confidence 9985 59999999999999854 589999999999987654 3899999999999999999999999888
Q ss_pred HhhhcchhhhHhhhhhhhhhhHHHhhhcCCCCCCC
Q 007327 565 VEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRH 599 (608)
Q Consensus 565 ~p~~~~~~lf~~~R~~G~iAH~~Eq~~~~~p~~~~ 599 (608)
+|+++|++||+||++||+..+..+.|+
T Consensus 235 --------lf~i~R~~Gw~AH~~Eq~~~~~~i~RP 261 (265)
T cd06101 235 --------LFAVSRAVGWLAHLIEQREDGQRIIRP 261 (265)
T ss_pred --------HHHHHhHhHHHHHHHHHHhcCCCccCC
Confidence 999999999999999999766345555
No 23
>PRK14037 citrate synthase; Provisional
Probab=100.00 E-value=1.4e-53 Score=454.96 Aligned_cols=234 Identities=22% Similarity=0.310 Sum_probs=210.5
Q ss_pred hhhHHHHhcccCCcchhhhheeccCCCCcccCCCCCCcccccCCcHHHHHHHhhcCCCCChhHHHHHHHHHHHhcCCCCC
Q 007327 337 DLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPC 416 (608)
Q Consensus 337 ~~~~~rllA~~p~i~A~~t~I~~~~g~~i~~~g~dl~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHgl~ 416 (608)
...+++|+|++|+|++++|+ ++.|++++.|+.+++ +.+||++|+ +|++|+++++++||++||||||||+|
T Consensus 117 ~~~a~~liA~~p~i~a~~yr--~~~g~~~~~p~~~~s-------~a~nfl~ml-~G~~p~~~~~~~l~~~Lil~ADHg~n 186 (377)
T PRK14037 117 KEKAISIIAKMATIVANVYR--RKEGNKPRIPEPSDS-------FAESFLLAS-FAREPTAEEIKAMDAALILYTDHEVP 186 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHcCCCCCCCCCCCC-------HHHHHHHHH-hccCCcHHHHHHHHHHHhHhcccCCc
Confidence 46789999999999999999 778999999999988 888999888 79999999999999999999999999
Q ss_pred CccchhhhhhccCCCChHHHHHHhhhcc-CCCCcCccHHHHHHHHHHhccCcCHHHHHHHHHH-cCCCcCCCCCCCCCCC
Q 007327 417 VSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKK-KGIRVPGIGHRIKRGD 494 (608)
Q Consensus 417 ~st~~aar~~aSt~a~~~~av~agl~a~-Gp~hGGa~~~a~~~l~~~~~~~~~~~~~v~~~l~-~~~~ipGFGH~vy~~~ 494 (608)
+|| |++|+++||++|+|+|++|||+++ ||+||||+++|++||+++.+. +++++|+++.+. ++++|||||||+||.
T Consensus 187 aST-~aarv~aSt~ad~ysav~agi~al~GplHGGA~e~v~~~l~ei~~~-~~~~~~~~~~~~~~~~~i~GFGHrvyk~- 263 (377)
T PRK14037 187 AST-TAALVAASTLSDMYSCITAALAALKGPLHGGAAEEAFKQFVEIGDP-NNVEMWFNDKIINGKKRLMGFGHRVYKT- 263 (377)
T ss_pred hHh-HHHHHhhccCCCHHHHHHHHHHhccCcccCChHHHHHHHHHHhcCh-hhHHHHHHHHHhcCCCeecCCCCCCCCC-
Confidence 999 999999999999999999999998 999999999999999999876 688999987654 458999999999985
Q ss_pred CCcHHHHHHHHHHHHhC---C-CChHHHHHHHHHHHHhhc--cCCcccchhhHHHHHHHHhcccCCCCChhhHHHHHhhh
Q 007327 495 NRDKRVELLQKFARTHF---P-SVKYMEYAVQVETYTLSK--ANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIG 568 (608)
Q Consensus 495 ~~DPRa~~L~~~~~~~~---~-~~~~~~~a~~~e~~~~~~--~~~l~~Nvd~~~a~l~~~lG~~~~~f~~~~~~~~~p~~ 568 (608)
.|||+++|+++++++. . .++++++++++|+++.+. .|+++||||||+|++++.||||.++||+
T Consensus 264 -~DPRa~~L~~~~~~~~~~~~~~~~~~~ia~~~e~~~~~~~~~k~l~pNvD~~sa~l~~~lG~p~~~~t~---------- 332 (377)
T PRK14037 264 -YDPRAKIFKELAETLIERNSEAKKYFEIAQKLEELGIKQFGSKGIYPNTDFYSGIVFYALGFPVYMFTA---------- 332 (377)
T ss_pred -CCccHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHcCCChhhcch----------
Confidence 5999999999999873 2 478999999999986542 5899999999999999999999999999
Q ss_pred cchhhhHhhhhhhhhhhHHHhhhcCCCCCC
Q 007327 569 YLNGLFVLARSIGLIGHTFDQKRLKQPLYR 598 (608)
Q Consensus 569 ~~~~lf~~~R~~G~iAH~~Eq~~~~~p~~~ 598 (608)
+|++||++||+|||+||+....++.|
T Consensus 333 ----lf~isR~~Gw~AH~~Eq~~~~~~~~R 358 (377)
T PRK14037 333 ----LFALSRTLGWLAHIIEYVEEQHRLIR 358 (377)
T ss_pred ----hHHhhhhhHHHHHHHHHHhcCCcccc
Confidence 99999999999999999854323333
No 24
>cd06106 ScCit3_like Saccharomyces cerevisiae (Sc) 2-methylcitrate synthase Cit3-like. 2-methylcitrate synthase (2MCS) catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxaloacetate (OAA) to form 2-methylcitrate and CoA. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) with OAA to form citrate and CoA, the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the a
Probab=100.00 E-value=7.1e-54 Score=461.42 Aligned_cols=240 Identities=22% Similarity=0.230 Sum_probs=212.3
Q ss_pred hhhhHHHHhcccCCcchhhhheeccCCCCcccCCCCCCcccccCCcHHHHHHHhhcCCCCChhHHHHHHHHHHHhcCCC-
Q 007327 336 EDLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHG- 414 (608)
Q Consensus 336 ~~~~~~rllA~~p~i~A~~t~I~~~~g~~i~~~g~dl~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHg- 414 (608)
..+++++|+|++|+|+|++|++....+.++.+|+.+++ +.+||++|+ |..|+++..++||.+||||||||
T Consensus 166 ~~~~~~rLiAk~ptI~A~~yr~~~g~~~~~~~p~~~ls-------~a~NFL~Ml--g~~p~~~~~~~l~~~LiL~ADHeg 236 (428)
T cd06106 166 TLEDSLNLIARLPALAARIYRNVYGEGHGLGKIDPEVD-------WSYNFTSML--GYGDNLDFVDLLRLYIALHGDHEG 236 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCcC-------HHHHHHHHh--CCCCChHHHHHHHHHHhhhcccCC
Confidence 34778999999999999999943323446777899998 899999999 66788889999999999999999
Q ss_pred CCCccchhhhhhccCCCChHHHHHHhhhcc-CCCCcCccHHHHHHHHHH----hc--cCcCHHHHHHHHHHcCCCcCCCC
Q 007327 415 PCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDA----YD--RGLSAYEFVESMKKKGIRVPGIG 487 (608)
Q Consensus 415 l~~st~~aar~~aSt~a~~~~av~agl~a~-Gp~hGGa~~~a~~~l~~~----~~--~~~~~~~~v~~~l~~~~~ipGFG 487 (608)
+|+|| |++|+++||++|+|+|++|||+++ ||+||||+++|++||+++ ++ ..+++++||++.++++++|||||
T Consensus 237 ~NaST-faarvvaST~ad~ysav~agi~aL~GPlHGGAne~v~~~l~e~~~~ig~~~~~~~~~~~i~~~l~~g~~i~GfG 315 (428)
T cd06106 237 GNVSA-HTTHLVGSALSDPYLSYSAGLMGLAGPLHGLAAQEVLRWILEMQKNIGSKATDQDIRDYLWKTLKSGRVVPGYG 315 (428)
T ss_pred ccchH-HHHHHHhccCCCHHHHHHHHHHhcCCCcccChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcccCCC
Confidence 89999 999999999999999999999998 999999999999988776 32 12588999999999999999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhh------ccCCcccchhhHHHHHHHHhcccC-CCCCh
Q 007327 488 HRIKRGDNRDKRVELLQKFARTHF--PSVKYMEYAVQVETYTLS------KANNLVLNVDGAIGSLFLDLLAGS-GMFSK 558 (608)
Q Consensus 488 H~vy~~~~~DPRa~~L~~~~~~~~--~~~~~~~~a~~~e~~~~~------~~~~l~~Nvd~~~a~l~~~lG~~~-~~f~~ 558 (608)
||+|+. .|||+++|+++++++. ..++++++++++|+++.+ ..++++||||||+|++++.||||. +|||+
T Consensus 316 HrvYk~--~DPRa~~l~~~~~~l~~~~~~~~~~~a~~ie~~~~~~l~~~~~~~~l~pNVDfysg~v~~~lGip~~~~ft~ 393 (428)
T cd06106 316 HAVLRK--PDPRFTALMEFAQTRPELENDPVVQLVQKLSEIAPGVLTEHGKTKNPFPNVDAASGVLFYHYGIREFLYYTV 393 (428)
T ss_pred CCCCCC--CCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhccccCCCCCchhHHHHHHHHcCCChhhcchH
Confidence 999985 5999999999999874 347899999999986532 358999999999999999999998 78999
Q ss_pred hhHHHHHhhhcchhhhHhhhhhhhhhhHHHhhhcCCCCCCCCC
Q 007327 559 QEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPW 601 (608)
Q Consensus 559 ~~~~~~~p~~~~~~lf~~~R~~G~iAH~~Eq~~~~~p~~~~~~ 601 (608)
+|++||++||+||++||+....||.||..
T Consensus 394 --------------lFaisR~~GW~AHi~eq~~~~~~I~RP~s 422 (428)
T cd06106 394 --------------IFGVSRALGPLTQLVWDRILGLPIERPKS 422 (428)
T ss_pred --------------HHHHHHHHHHHHHHHHHHhCCCCCcCCCc
Confidence 99999999999999999977788988843
No 25
>PLN02456 citrate synthase
Probab=100.00 E-value=9.9e-54 Score=464.01 Aligned_cols=237 Identities=22% Similarity=0.278 Sum_probs=215.0
Q ss_pred chhhhHHHHhcccCCcchhhhheeccCCCCcccCCCCCCcccccCCcHHHHHHHhhcC-----CCCChhHHHHHHHHHHH
Q 007327 335 PEDLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFK-----RSLPRYCTQFIEICIML 409 (608)
Q Consensus 335 ~~~~~~~rllA~~p~i~A~~t~I~~~~g~~i~~~g~dl~~li~~~~~~~~~l~~l~~~-----~~~~~~~~~~l~~~lvl 409 (608)
..++++++|+|++|+|+|++|+ +..|++++.|+.+++ +.+||++|+ ++ .+|+++..++||++|||
T Consensus 185 ~~~~~a~rliAk~p~iaA~~yr--~~~g~~~~~P~~~ls-------~a~Nfl~Ml-~~~~~~~~~p~~~~~~~l~~~LiL 254 (455)
T PLN02456 185 VRDEDIVRLIGKLPTLAAAIYR--RMYGRGPVIPDNSLD-------YAENFLYML-GSLGDRSYKPDPRLARLLDLYFII 254 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHcCCCCCCCCCCCC-------HHHHHHHHh-cCCCCcCCCCCHHHHHHHHHHHee
Confidence 4457889999999999999999 778999999999998 899999999 45 46788899999999999
Q ss_pred hcCCCCCCccchhhhhhc-cCCCChHHHHHHhhhcc-CCCCcCccHHHHHHHHHHhccCcCHHHHHHHHHHcCCCcCCCC
Q 007327 410 CADHGPCVSGAHNTIVTA-RAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIG 487 (608)
Q Consensus 410 ~aDHgl~~st~~aar~~a-St~a~~~~av~agl~a~-Gp~hGGa~~~a~~~l~~~~~~~~~~~~~v~~~l~~~~~ipGFG 487 (608)
|||||+|+|| |++|+++ ||++|+|+|++|||+++ ||+||||+++|++||+++.+. +++++||++.++++++|||||
T Consensus 255 hADHe~n~ST-~aar~~a~St~ad~ysavaAgi~aL~GPlHGGA~e~v~~~l~ei~~~-~~v~~~v~~~l~~~~~l~GFG 332 (455)
T PLN02456 255 HADHEGGCST-AAARHLVGSSGVDPYTSVAAGVNALAGPLHGGANEAVLKMLKEIGTV-ENIPEYVEGVKNSKKVLPGFG 332 (455)
T ss_pred eccCCCCchh-HHHHHHHhccCCCHHHHHHHHhhhcCCCcccChHHHHHHHHHHhCCH-HHHHHHHHHHHhCCCcccCCC
Confidence 9999999999 8999888 99999999999999998 999999999999999999866 689999999999999999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhh----ccCCcccchhhHHHHHHHHhcccCCCCChhh
Q 007327 488 HRIKRGDNRDKRVELLQKFARTH---FPSVKYMEYAVQVETYTLS----KANNLVLNVDGAIGSLFLDLLAGSGMFSKQE 560 (608)
Q Consensus 488 H~vy~~~~~DPRa~~L~~~~~~~---~~~~~~~~~a~~~e~~~~~----~~~~l~~Nvd~~~a~l~~~lG~~~~~f~~~~ 560 (608)
||+||. .|||+++|+++++++ ...++++++++++|+++.. +.|+++||||||+|++++.||||.++||+
T Consensus 333 Hrvyk~--~DPRa~~L~~~a~~l~~~~~~~~~~~ia~~le~~~~~~~~~~~r~l~pNVDfysg~l~~~lGip~~~~t~-- 408 (455)
T PLN02456 333 HRVYKN--YDPRAKCIREFALEVFKHVGDDPLFKVASALEEVALLDEYFKVRKLYPNVDFYSGVLLRALGFPEEFFTV-- 408 (455)
T ss_pred CCCCCC--CCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHcCcChhhccc--
Confidence 999985 599999999999976 4678999999999997522 36899999999999999999999999999
Q ss_pred HHHHHhhhcchhhhHhhhhhhhhhhHHHhhhc-----CCCCCCC
Q 007327 561 IDEIVEIGYLNGLFVLARSIGLIGHTFDQKRL-----KQPLYRH 599 (608)
Q Consensus 561 ~~~~~p~~~~~~lf~~~R~~G~iAH~~Eq~~~-----~~p~~~~ 599 (608)
+|+++|++||+|||+||+.. .||...+
T Consensus 409 ------------lFaisR~~Gw~AH~~E~~~~~~~ri~RP~~~Y 440 (455)
T PLN02456 409 ------------LFAVSRAAGYLSQWDEALGLPDERIMRPKQVY 440 (455)
T ss_pred ------------hhhhhhHHHHHHHHHHHHhCCcccccCCCccc
Confidence 99999999999999999843 2455554
No 26
>cd06112 citrate_synt_like_1_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, an
Probab=100.00 E-value=3.1e-53 Score=452.45 Aligned_cols=252 Identities=23% Similarity=0.309 Sum_probs=220.6
Q ss_pred cCCCCCCCCCC-CCCCchhhhHHHHhcccCCcchhhhheeccCCCCcccCCCCCCcccccCCcHHHHHHHhhcCCCCChh
Q 007327 320 EGKIPPVKEVT-PPQIPEDLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRY 398 (608)
Q Consensus 320 ~G~~~~~~~~~-~p~~~~~~~~~rllA~~p~i~A~~t~I~~~~g~~i~~~g~dl~~li~~~~~~~~~l~~l~~~~~~~~~ 398 (608)
.+.++|..++. ..+...++++++|+|++|+|+|++++ ++.|++++.++.+++ +.+||++|+ +|++|+++
T Consensus 100 l~~~~~~~~~~~~~~~~~~~~a~~liA~~p~i~a~~~r--~~~g~~~~~p~~~ls-------~~~nfl~ml-~g~~p~~~ 169 (373)
T cd06112 100 LGMFYPKPEVLKPNPDYIDAATVKLIAKMPTLVAMWAR--IRNGDDPIEPRPDLD-------YAENFLYML-FGEEPDPA 169 (373)
T ss_pred hhccCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHH--HHCCCCCcCCCCCCC-------HHHHHHHHH-hCCCCCHH
Confidence 34455544333 11123346789999999999999988 778888999998887 788999888 78889999
Q ss_pred HHHHHHHHHHHhcCCCCCCccchhhhhhccCCCChHHHHHHhhhcc-CCCCcCccHHHHHHHHHHhccCcCHHHHHHHHH
Q 007327 399 CTQFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMK 477 (608)
Q Consensus 399 ~~~~l~~~lvl~aDHgl~~st~~aar~~aSt~a~~~~av~agl~a~-Gp~hGGa~~~a~~~l~~~~~~~~~~~~~v~~~l 477 (608)
++++||++|||+||||+|+|| |++|+++||++|+|+|++||++++ ||+||||+++|++||+++.+. +++++||++.+
T Consensus 170 ~~~~l~~~Lil~aDHg~n~ST-faaRvvaSt~ad~~s~~~aai~al~GplHGGA~e~~~~~l~~i~~~-~~~~~~v~~~l 247 (373)
T cd06112 170 TAKILDACLILHAEHTMNAST-FSALVTGSTLADPYAVISSAIGTLSGPLHGGANEDVLEMLEEIGSP-ENVKAYLDKKL 247 (373)
T ss_pred HHHHHHHHHhhcccCCCCchH-HHHHHHHhcCCcHHHHHHHHHHhccCccccchHHHHHHHHHHhCCH-HHHHHHHHHHH
Confidence 999999999999999999999 999999999999999999999998 999999999999999999876 68999999999
Q ss_pred HcCCCcCCCCCCCCCCCCCcHHHHHHHHHHHHhCC----CChHHHHHHHHHHHHhhc--cCCcccchhhHHHHHHHHhcc
Q 007327 478 KKGIRVPGIGHRIKRGDNRDKRVELLQKFARTHFP----SVKYMEYAVQVETYTLSK--ANNLVLNVDGAIGSLFLDLLA 551 (608)
Q Consensus 478 ~~~~~ipGFGH~vy~~~~~DPRa~~L~~~~~~~~~----~~~~~~~a~~~e~~~~~~--~~~l~~Nvd~~~a~l~~~lG~ 551 (608)
+++++|||||||+||. .|||+++|+++++++.. .++++++++++|+++.+. .|+++||||||+|++++.|||
T Consensus 248 ~~~~~i~GfGH~vyk~--~DPRa~~L~~~~~~l~~~~~~~~~~~~i~~~~e~~~~~~~~~k~l~pNvd~~s~~l~~~lG~ 325 (373)
T cd06112 248 ANKQKIWGFGHRVYKT--KDPRATILQKLAEDLFAKMGELSKLYEIALEVERLCEELLGHKGVYPNVDFYSGIVYKELGI 325 (373)
T ss_pred hcCCeeeCCCCccCCC--CCcHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHhCcCCCCcChHHHHHHHHHHhCc
Confidence 9999999999999985 59999999999998852 478999999999987553 589999999999999999999
Q ss_pred cCCCCChhhHHHHHhhhcchhhhHhhhhhhhhhhHHHhhhcC---CCCCCC
Q 007327 552 GSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLK---QPLYRH 599 (608)
Q Consensus 552 ~~~~f~~~~~~~~~p~~~~~~lf~~~R~~G~iAH~~Eq~~~~---~p~~~~ 599 (608)
|.++||+ +|++||++||+|||+||+..+ ||..++
T Consensus 326 p~~~~t~--------------lF~isR~~Gw~AH~~Eq~~~~~l~RP~~~Y 362 (373)
T cd06112 326 PADLFTP--------------IFAVARVAGWLAHWKEQLGDNRIFRPTQIY 362 (373)
T ss_pred ChHhhch--------------HHHHHhHHHHHHHHHHHHhccCccCCCcee
Confidence 9999999 999999999999999998543 444444
No 27
>TIGR01793 cit_synth_euk citrate (Si)-synthase, eukaryotic. This model includes both mitochondrial and peroxisomal forms of citrate synthase. Citrate synthase is the entry point to the TCA cycle from acetyl-CoA. Peroxisomal forms, such as SP:P08679 from yeast (recognized by the C-terminal targeting motif SKL) act in the glyoxylate cycle. Eukaryotic homologs excluded by the high trusted cutoff of this model include a Tetrahymena thermophila citrate synthase that doubles as a filament protein, a putative citrate synthase from Plasmodium falciparum (no TCA cycle), and a methylcitrate synthase from Aspergillus nidulans.
Probab=100.00 E-value=1.9e-53 Score=457.33 Aligned_cols=240 Identities=19% Similarity=0.205 Sum_probs=216.0
Q ss_pred CchhhhHHHHhcccCCcchhhhheeccCCCCcccCCCCCCcccccCCcHHHHHHHhhcCCCCChhHHHHHHHHHHHhcCC
Q 007327 334 IPEDLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADH 413 (608)
Q Consensus 334 ~~~~~~~~rllA~~p~i~A~~t~I~~~~g~~i~~~g~dl~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDH 413 (608)
.+..+++++|+|++|+|+|++|++..+.|++ +.++.+++ +.+||++|+ . . ++++..++||.+|||||||
T Consensus 167 ~~~~e~~~~LiAk~P~i~A~~yr~~~~~g~~-i~p~~~l~-------~a~Nfl~Ml-~-~-~~~~~~~~l~~~LiLhADH 235 (427)
T TIGR01793 167 EYTYEDSMDLIAKLPTVAAYIYRNMYKDGQS-ISIDDSKD-------YSANFAHML-G-Y-DSPSFQELMRLYLTIHSDH 235 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-cCCCCCcc-------HHHHHHHHh-c-C-CCHHHHHHHHHHHhhhccc
Confidence 3456788999999999999999954457777 77888888 899999998 3 3 7888999999999999999
Q ss_pred C-CCCccchhhhhhccCCCChHHHHHHhhhcc-CCCCcCccHHHHHHHHHHhc------cCcCHHHHHHHHHHcCCCcCC
Q 007327 414 G-PCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYD------RGLSAYEFVESMKKKGIRVPG 485 (608)
Q Consensus 414 g-l~~st~~aar~~aSt~a~~~~av~agl~a~-Gp~hGGa~~~a~~~l~~~~~------~~~~~~~~v~~~l~~~~~ipG 485 (608)
| +|+|| ||+|+++||++|+|+|++|||+++ ||+||||+|+|++||+++.+ ..+++++||++.++++++|||
T Consensus 236 eg~NaST-faarvvaSt~ad~y~~v~Agi~aL~GPlHGgAn~~vl~~l~ei~~~ig~~~s~~~v~~~i~~~l~~g~~i~G 314 (427)
T TIGR01793 236 EGGNVSA-HTGHLVGSALSDPYLSFAAALNGLAGPLHGLANQEVLLWLKSVVSECGENVTKEQLKDYIWKTLNSGKVVPG 314 (427)
T ss_pred ccccchh-HHHHHhhccCCCHHHHHHHHHhhccCCccCCcHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCcccC
Confidence 9 89999 999999999999999999999998 99999999999999999853 225689999999999999999
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh------hccCCcccchhhHHHHHHHHhccc-CCCCCh
Q 007327 486 IGHRIKRGDNRDKRVELLQKFARTHFPSVKYMEYAVQVETYTL------SKANNLVLNVDGAIGSLFLDLLAG-SGMFSK 558 (608)
Q Consensus 486 FGH~vy~~~~~DPRa~~L~~~~~~~~~~~~~~~~a~~~e~~~~------~~~~~l~~Nvd~~~a~l~~~lG~~-~~~f~~ 558 (608)
||||+|+. .|||+.+|++++++....++++++++++++++. .+.++++||||||+|++++.||+| .++||+
T Consensus 315 fGH~vyr~--~DPRa~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~pNVD~~sg~l~~~lGip~~~~~t~ 392 (427)
T TIGR01793 315 YGHAVLRK--TDPRYICQREFALKHLPDDPLFKLVSNLYKIVPGILTELGKVKNPWPNVDAHSGVLLQYYGLTEARYYTV 392 (427)
T ss_pred CCCCCCCC--CCCCcHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHcCCCchhhhhh
Confidence 99999985 599999999999988888899999999998652 246899999999999999999998 699999
Q ss_pred hhHHHHHhhhcchhhhHhhhhhhhhhhHHHhhhcCCCCCCCCC
Q 007327 559 QEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPW 601 (608)
Q Consensus 559 ~~~~~~~p~~~~~~lf~~~R~~G~iAH~~Eq~~~~~p~~~~~~ 601 (608)
+|++||++||+||++||+...+||.|+..
T Consensus 393 --------------lFavsR~~Gw~AH~ieq~~~~~~I~RP~s 421 (427)
T TIGR01793 393 --------------LFGVSRALGILSQLIWDRALGLPLERPKS 421 (427)
T ss_pred --------------HhhhhccchHHHHHHHHHHcCCCccCCcc
Confidence 99999999999999999988889998843
No 28
>cd06111 DsCS_like Cold-active citrate synthase (CS) from an Antarctic bacterial strain DS2-3R (Ds)-like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2-methylcitrate synthase (2MCS) catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. DsCS, compared with CS from the hyperthermophile Pyrococcus furiosus (not included in this group), has an increase in the size of surface loops, a higher proline content in the loop regions, a more accessible active site, and a highe
Probab=100.00 E-value=4.4e-53 Score=449.69 Aligned_cols=248 Identities=18% Similarity=0.257 Sum_probs=219.3
Q ss_pred CCCCCCCCCCCCCCchhhhHHHHhcccCCcchhhhheeccCCCCcccCCCCCCcccccCCcHHHHHHHhhcCCCCChhHH
Q 007327 321 GKIPPVKEVTPPQIPEDLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCT 400 (608)
Q Consensus 321 G~~~~~~~~~~p~~~~~~~~~rllA~~p~i~A~~t~I~~~~g~~i~~~g~dl~~li~~~~~~~~~l~~l~~~~~~~~~~~ 400 (608)
+.++|...+..+.. ....++++++++|++.+++|+ ++.|++++.|+.+++ +.+||++|+ +|..|+++++
T Consensus 99 ~~~d~~~~~~~~~~-~~~~a~~lia~~~~i~a~~~~--~~~g~~~~~p~~~ls-------~a~nfl~m~-~g~~p~~~~~ 167 (362)
T cd06111 99 GAEDSETDDSSPDA-NLAKAIRLLAQLPTVVAADIR--RRKGLDPIPPDSDLG-------IAENFLHMC-FGEVPSPEVV 167 (362)
T ss_pred hccCcccccCCHHH-HHHHHHHHHHHHHHHHHHHHH--HcCCCCCcCCCCCcC-------HHHHHHHHh-hCCCCCHHHH
Confidence 34455544444432 347789999999999999998 778888888888887 888999888 5888889999
Q ss_pred HHHHHHHHHhcCCCCCCccchhhhhhccCCCChHHHHHHhhhcc-CCCCcCccHHHHHHHHHHhccCcCHHHHHHHHHHc
Q 007327 401 QFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKK 479 (608)
Q Consensus 401 ~~l~~~lvl~aDHgl~~st~~aar~~aSt~a~~~~av~agl~a~-Gp~hGGa~~~a~~~l~~~~~~~~~~~~~v~~~l~~ 479 (608)
++||++|||+||||+|+|| |++|+++||++|+|+||+|||+++ ||+||||+++|++||+++.+. ++++++|++.+++
T Consensus 168 ~~l~~~Lvl~ADHg~n~St-~aaR~~aSt~ad~~~av~agl~aL~GplHGGA~~~~~~~l~ei~~~-~~~~~~v~~~~~~ 245 (362)
T cd06111 168 RAFDVSLILYAEHSFNAST-FTARVITSTLSDIYSAITGAIGALKGPLHGGANEAVMHMMLEIDDP-EKAAQWMLDALAR 245 (362)
T ss_pred HHHHHHHHHHhccCCchhH-HHHHHHHccCCCHHHHHHHHHhhccCccccchHHHHHHHHHHhCCh-hhHHHHHHHHHhc
Confidence 9999999999999999999 999999999999999999999997 999999999999999999876 6899999999999
Q ss_pred CCCcCCCCCCCCCCCCCcHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHhhccCCcccchhhHHHHHHHHhcccCCCC
Q 007327 480 GIRVPGIGHRIKRGDNRDKRVELLQKFARTHF---PSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMF 556 (608)
Q Consensus 480 ~~~ipGFGH~vy~~~~~DPRa~~L~~~~~~~~---~~~~~~~~a~~~e~~~~~~~~~l~~Nvd~~~a~l~~~lG~~~~~f 556 (608)
+++|||||||+||. .|||+++|+++++++. ..++++++++++++.+.+ .++++||||||+|+++++||||.++|
T Consensus 246 ~~~l~GFGH~vyk~--~DPRa~~L~~~l~~l~~~~~~~~~~~~~~~i~~~~~~-~~~l~pNvD~~~a~l~~~lG~p~~~~ 322 (362)
T cd06111 246 KEKVMGFGHRVYKS--GDSRVPTMEKALRRVAAVHDGQKWLAMYDALEDAMVA-AKGIKPNLDFPAGPAYYLMGFDIDFF 322 (362)
T ss_pred CCceecCCCCCCCC--CCchHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHH-hcCCCCChHHHHHHHHHHcCcChhhh
Confidence 99999999999985 5999999999888762 356899999999998764 68899999999999999999999998
Q ss_pred ChhhHHHHHhhhcchhhhHhhhhhhhhhhHHHhhhcCCCCCCC
Q 007327 557 SKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRH 599 (608)
Q Consensus 557 ~~~~~~~~~p~~~~~~lf~~~R~~G~iAH~~Eq~~~~~p~~~~ 599 (608)
|+ +|+++|++||+|||+||++.+ ++.|+
T Consensus 323 ~~--------------lf~~~R~~Gw~AH~~Eq~~~~-~l~Rp 350 (362)
T cd06111 323 TP--------------IFVMARITGWTAHIMEQRADN-ALIRP 350 (362)
T ss_pred hh--------------HHHHHHHHHHHHHHHHHHHcC-CcccC
Confidence 88 999999999999999999654 45555
No 29
>cd06103 ScCS-like Saccharomyces cerevisiae (Sc) citrate synthase (CS)-like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) with oxaloacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). Some CS proteins function as 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homo
Probab=100.00 E-value=2.7e-53 Score=457.17 Aligned_cols=239 Identities=20% Similarity=0.237 Sum_probs=214.2
Q ss_pred hhhhHHHHhcccCCcchhhhheeccCCCCcccCCCCCCcccccCCcHHHHHHHhhcCCCCChhHHHHHHHHHHHhcCCC-
Q 007327 336 EDLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHG- 414 (608)
Q Consensus 336 ~~~~~~rllA~~p~i~A~~t~I~~~~g~~i~~~g~dl~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHg- 414 (608)
...++++|+|++|+|++++|++..+.|++++.|+.+++ +.+||++|+ +.+ +++..++||++||||||||
T Consensus 167 ~~~~a~~liA~~p~I~A~~yr~~~~~g~~~~~p~~~ls-------~aeNfl~ml--~~~-~~~~~~~l~~~LiL~ADHe~ 236 (426)
T cd06103 167 VYEDAMDLIAKLPVVAAKIYRRKYRKGGEIGAIDSKLD-------WSANFAHML--GYE-DEEFTDLMRLYLTLHSDHEG 236 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCCCCCcC-------HHHHHHHHh--CCC-CHHHHHHHHHHHhhhhccCC
Confidence 34778999999999999999943235889999999998 899999998 333 3778899999999999999
Q ss_pred CCCccchhhhhhccCCCChHHHHHHhhhcc-CCCCcCccHHHHHHHHHHhc------cCcCHHHHHHHHHHcCCCcCCCC
Q 007327 415 PCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYD------RGLSAYEFVESMKKKGIRVPGIG 487 (608)
Q Consensus 415 l~~st~~aar~~aSt~a~~~~av~agl~a~-Gp~hGGa~~~a~~~l~~~~~------~~~~~~~~v~~~l~~~~~ipGFG 487 (608)
+|+|| |++|+++||++|+|+|++|||+++ ||+||||+++|++||+++.+ ..++++++|++.++++++|||||
T Consensus 237 ~NaST-faaRvvaSt~ad~ysav~agi~aL~GplHGGA~e~v~~~l~ei~~~ig~~~~~~~~~~~v~~~l~~~~~i~GfG 315 (426)
T cd06103 237 GNVSA-HTSHLVGSALSDPYLSFSAALNGLAGPLHGLANQEVLKWLLKMQKELGKDVSDEELEKYIWDTLNSGRVVPGYG 315 (426)
T ss_pred ccchH-HHHHHHhccCCCHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCcccCCC
Confidence 79999 999999999999999999999998 99999999999999998862 22589999999999999999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhh------ccCCcccchhhHHHHHHHHhccc-CCCCChhh
Q 007327 488 HRIKRGDNRDKRVELLQKFARTHFPSVKYMEYAVQVETYTLS------KANNLVLNVDGAIGSLFLDLLAG-SGMFSKQE 560 (608)
Q Consensus 488 H~vy~~~~~DPRa~~L~~~~~~~~~~~~~~~~a~~~e~~~~~------~~~~l~~Nvd~~~a~l~~~lG~~-~~~f~~~~ 560 (608)
||+||. .|||+++|+++++++...++++++++++|+++.+ +.++++||||||+|++++.||+| .++||+
T Consensus 316 HrvYk~--~DPRa~~L~~~~~~~~~~~~~~~~a~~ie~~~~~~~~~~~~~k~l~pNVDfysa~v~~~lGip~~~~ft~-- 391 (426)
T cd06103 316 HAVLRK--TDPRFTCQREFALKHLPDDPLFKLVAQCYKIIPGVLKEHGKVKNPYPNVDAHSGVLLQHYGMTEPQYYTV-- 391 (426)
T ss_pred CCCCCC--CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcccCCCCCChHhHHHHHHHHcCCChhhhhhH--
Confidence 999985 5999999999999988788999999999986532 35799999999999999999999 589999
Q ss_pred HHHHHhhhcchhhhHhhhhhhhhhhHHHhhhcCCCCCCCCC
Q 007327 561 IDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPW 601 (608)
Q Consensus 561 ~~~~~p~~~~~~lf~~~R~~G~iAH~~Eq~~~~~p~~~~~~ 601 (608)
+|+++|++||+||++||+..+++|.||..
T Consensus 392 ------------lFa~sR~~Gw~AH~~Eq~~~~~~i~RP~s 420 (426)
T cd06103 392 ------------LFGVSRALGVLAQLVWSRALGLPIERPKS 420 (426)
T ss_pred ------------HHhHhhcchHHHHHHHHHhCCCCCCCCCc
Confidence 99999999999999999987888888843
No 30
>cd06114 EcCS_like Escherichia coli (Ec) citrate synthase (CS) GltA_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the active site. Type II CSs are unique to gram-negative bacteria and are homohexamers of identical subunits (approximated as a trimer of dimers). Some typ
Probab=100.00 E-value=5.4e-53 Score=453.55 Aligned_cols=249 Identities=21% Similarity=0.286 Sum_probs=216.9
Q ss_pred CCCCCCCCCCCCchhhhHHHHhcccCCcchhhhheeccCCCCcccCCCCCCcccccCCcHHHHHHHhhcCC-----CCCh
Q 007327 323 IPPVKEVTPPQIPEDLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKR-----SLPR 397 (608)
Q Consensus 323 ~~~~~~~~~p~~~~~~~~~rllA~~p~i~A~~t~I~~~~g~~i~~~g~dl~~li~~~~~~~~~l~~l~~~~-----~~~~ 397 (608)
++|...+.........++++|+|++|+|++++|+ ++.|++++.|+.+++ +.+||++|+ +|+ +|++
T Consensus 129 ~d~~~~~~~~~~~~~~~a~~lia~~p~i~a~~~r--~~~g~~~~~p~~~ls-------~a~nfl~ml-~g~~~~~~~p~~ 198 (400)
T cd06114 129 FYPDSLDVNDPEQRELAAIRLIAKVPTIAAMAYR--YSIGQPFIYPDNDLS-------YVENFLHMM-FAVPYEPYEVDP 198 (400)
T ss_pred cCccccccCCHHHHHHHHHHHHHHHHHHHHHHHH--HHcCCCCCCCCCCcC-------HHHHHHHHh-cCCCCccCCCCH
Confidence 4554444323333456789999999999999999 677888889999988 899999999 666 6788
Q ss_pred hHHHHHHHHHHHhcCCCCCCccchhhhhhccCCCChHHHHHHhhhcc-CCCCcCccHHHHHHHHHHhccCcCHHHHHHHH
Q 007327 398 YCTQFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESM 476 (608)
Q Consensus 398 ~~~~~l~~~lvl~aDHgl~~st~~aar~~aSt~a~~~~av~agl~a~-Gp~hGGa~~~a~~~l~~~~~~~~~~~~~v~~~ 476 (608)
+..++||++||||||||+|+|| |++|+++||++|+|+|++|||+++ ||+||||++.|++||+++.+. ++++++|++.
T Consensus 199 ~~~~~l~~~LvL~aDH~~n~ST-faaRv~aSt~adl~sav~agl~al~GplHGGA~~~v~~~l~~i~~~-~~~~~~v~~~ 276 (400)
T cd06114 199 VVVKALDTILILHADHEQNAST-STVRMVGSSGANLFASISAGIAALWGPLHGGANEAVLEMLEEIGSV-GNVDKYIAKA 276 (400)
T ss_pred HHHHHHHHHHeeeccCCCcchH-HHHHHHhccCCcHHHHHHHHHHhccCCcccChHHHHHHHHHHhcCc-ccHHHHHHHH
Confidence 8999999999999999999999 999999999999999999999998 999999999999999999886 6899999999
Q ss_pred HHcC--CCcCCCCCCCCCCCCCcHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHhhc----cCCcccchhhHHHHHH
Q 007327 477 KKKG--IRVPGIGHRIKRGDNRDKRVELLQKFARTH----FPSVKYMEYAVQVETYTLSK----ANNLVLNVDGAIGSLF 546 (608)
Q Consensus 477 l~~~--~~ipGFGH~vy~~~~~DPRa~~L~~~~~~~----~~~~~~~~~a~~~e~~~~~~----~~~l~~Nvd~~~a~l~ 546 (608)
++++ ++|||||||+|+. .|||+++|+++++++ ...++++++++++|+++.++ +++++||||||+|+++
T Consensus 277 l~~~~~~~ipGfGH~vyk~--~DPRa~~L~~~~~~l~~~~~~~~~~~~~~~~ie~~~~~~~~~~~~~l~pNvD~~~a~l~ 354 (400)
T cd06114 277 KDKNDPFRLMGFGHRVYKN--YDPRAKILKKTCDEVLAELGKDDPLLEIAMELEEIALKDDYFIERKLYPNVDFYSGIIL 354 (400)
T ss_pred HhcCCCccccCCCCCCCCC--CCccHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhcccCCCCChHHHHHHHH
Confidence 9987 5999999999985 599999999998775 34578999999999965432 5999999999999999
Q ss_pred HHhcccCCCCChhhHHHHHhhhcchhhhHhhhhhhhhhhHHHhhhcC-CCCCCC
Q 007327 547 LDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLK-QPLYRH 599 (608)
Q Consensus 547 ~~lG~~~~~f~~~~~~~~~p~~~~~~lf~~~R~~G~iAH~~Eq~~~~-~p~~~~ 599 (608)
+.||+|.++||+ +|+++|++||+|||+||++.+ ..+.|+
T Consensus 355 ~~lG~p~~~~~~--------------lFa~sR~~Gw~AH~~Eq~~~~~~~liRP 394 (400)
T cd06114 355 RALGIPTEMFTV--------------LFALGRTPGWIAQWREMHEDPELKIGRP 394 (400)
T ss_pred HHcCCChHhhhh--------------hHHHHhHHHHHHHHHHHHhCCCCceeCc
Confidence 999999999888 999999999999999998643 234444
No 31
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]
Probab=100.00 E-value=1.1e-52 Score=468.43 Aligned_cols=279 Identities=20% Similarity=0.294 Sum_probs=256.5
Q ss_pred ccCCCCCCCcEEEEEcCCc------hHHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhc
Q 007327 2 ATGQLFSKTTQALFYNYKQ------LPIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAA 75 (608)
Q Consensus 2 ~~~~l~~p~s~avv~g~~~------~~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~ 75 (608)
.++.||+|+|||++|+... .+++||+++| . | .|++|| |..+ ||.|++||+|+.|+|.
T Consensus 3 ~l~~~~~p~svavigas~~~~~vg~~i~~nL~~~g-~---g--~i~PVn-p~~~---------~v~G~~ay~s~~~lp~- 65 (598)
T COG1042 3 DLERLFAPKSIAVIGASERPGKLGYEILRNLLEYG-Q---G--KIYPVN-PKYD---------EVLGVKAYTSVADLPD- 65 (598)
T ss_pred chhhhhCCceEEEeeccCCcchhHHHHHHHHHhcC-C---C--ceEecC-cccc---------ccccccccchHhhCCC-
Confidence 4688999999999965221 2999999996 4 4 599999 8664 8999999999999865
Q ss_pred CCCccEEEEeccChhcHHHHHHHhcCCCCCEEEEecCCCCHH------HHHHHHHHHHhCCCeEEcCCcccccccCcccc
Q 007327 76 HPMADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEA------DTKQLIAYARSNNKVVIGPATVGGIQAGAFKI 149 (608)
Q Consensus 76 ~p~vDlavi~vp~~~~~~~~le~~~~~gv~~~viis~Gf~e~------~~~~l~~~a~~~g~rvlGPNc~Gi~~~~~~~l 149 (608)
.+|++|++||+.. ++.++++|.++||+.+|++++||.|. .++++++.|+++++|++||||+|++|+.. +|
T Consensus 66 --~~dlav~~v~~~~-~~~i~~~~~~kGv~~~i~is~gf~e~~~~~~~~e~~~~~~a~~~~~rligPn~~G~~~~~~-gl 141 (598)
T COG1042 66 --APDLAVIVVPAKV-VPEIVHELGEKGVKGAIVISAGFREAGEEGMELEKELVEAARKYGMRIIGPNCLGLINPII-GL 141 (598)
T ss_pred --CCCeeEEEechhh-hHHHHHHhhccCCceEEEechhhhHHhhhHhHHHHHHHHHHHhcCceEecccccccccccc-cc
Confidence 4799999999985 89999999999999999999999997 57888999999999999999999999998 66
Q ss_pred cccCCcccccccccCCCCCcEEEEecChhHHHHHHHHHHhcCCceeEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEE
Q 007327 150 GDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVL 229 (608)
Q Consensus 150 ~~~~~~~~~~~p~~~~~~G~valvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~T~~I~ly 229 (608)
|++|++..+.. .+|+++++||||+++..+++|+.+.++|+|+++|.||++ |+++.|+++||.+|+.||+|.||
T Consensus 142 ---na~f~p~~~~~--~~g~~afvsqsgav~~~il~~~~~~~~g~s~~vs~gn~a--d~~~~d~~~~~~~D~~tk~i~Ly 214 (598)
T COG1042 142 ---NATFDPVFGLG--RGGGGAFVSQSGAVSFAILDWANEDGMGFSIKVSLGNAA--DRDESDLLEYLADDPRTKAIGLY 214 (598)
T ss_pred ---ccccCcccccc--cCCCeEEEEechHHHHhccchhhhcCCceeEEEeecchh--hcCchHhHHHHhhCccceEEEEE
Confidence 78988765421 389999999999999999999999999999999999999 99999999999999999999999
Q ss_pred EecCCccHHHHHHHHHhCCCCCCEEEEEeCCCccCcccccccCCCCCcCCCCcchHHHHHHHHHHcCCcccCCHHHHHHH
Q 007327 230 GELGGRDEYSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESA 309 (608)
Q Consensus 230 ~E~g~~~~~~f~~~~r~a~~~KPVvvlk~Grs~~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaGvi~v~~~~el~~~ 309 (608)
+| +++++|+|++++|+.+++||||++|+||++.+ ++|+.||||+++|++ .+|+++|+|+|++++++++||++.
T Consensus 215 ~E-~~~~~r~fl~~a~~~~~~kpii~lk~gr~~~~--akAa~shTgslag~~----~~y~Aa~~~agvir~~~~~elf~~ 287 (598)
T COG1042 215 IE-GVKDGRKFLNAARAAERKKPIIALKAGRSEAG--AKAAASHTGSLAGSD----EAYDAAFKQAGVIRVESIEELFDA 287 (598)
T ss_pred ec-cchhHHHHHHHHHHHhcCCCEEEEeccCCHHH--HHHHhcccccccccc----hhhHHHHHhhCceeccChHHHHHH
Confidence 99 99999999999999999999999999999999 999999999999999 999999999999999999999999
Q ss_pred HHHHHH
Q 007327 310 IKETFE 315 (608)
Q Consensus 310 ~~~~~~ 315 (608)
++++..
T Consensus 288 ~k~l~~ 293 (598)
T COG1042 288 AKALSH 293 (598)
T ss_pred HHHhcc
Confidence 998864
No 32
>PRK14033 citrate synthase; Provisional
Probab=100.00 E-value=1.3e-52 Score=447.70 Aligned_cols=244 Identities=18% Similarity=0.250 Sum_probs=218.3
Q ss_pred cCCCCCCCCCCCCCCchhhhHHHHhcccCCcchhhhheeccCCCCcccCCCCCCcccccCCcHHHHHHHhhcCCCCChhH
Q 007327 320 EGKIPPVKEVTPPQIPEDLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYC 399 (608)
Q Consensus 320 ~G~~~~~~~~~~p~~~~~~~~~rllA~~p~i~A~~t~I~~~~g~~i~~~g~dl~~li~~~~~~~~~l~~l~~~~~~~~~~ 399 (608)
.+..+|...+..+... ...++++++++|++.+++|+ ++.|.+.+.|+.+++ +..||++|+ +|.+|++++
T Consensus 108 l~~~d~~~~~~~~~~~-~~~a~~lia~~~~i~a~~~~--~~~g~~~~~p~~~~s-------~a~nfl~ml-~g~~p~~~~ 176 (375)
T PRK14033 108 LGAEDPEADDSSPEAN-LAKALRLFAVLPTIVAADQR--RRRGLDPIAPRSDLG-------YAENFLHMC-FGEVPEPEV 176 (375)
T ss_pred hccCCcccccCCHHHH-HHHHHHHHHHHHHHHHHHHH--hcCCCCccCCCCCCC-------HHHHHHHHH-hCCCCCHHH
Confidence 3455666555555433 47788999999999999999 778888888988887 788889888 688889999
Q ss_pred HHHHHHHHHHhcCCCCCCccchhhhhhccCCCChHHHHHHhhhcc-CCCCcCccHHHHHHHHHHhccCcCHHHHHHHHHH
Q 007327 400 TQFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKK 478 (608)
Q Consensus 400 ~~~l~~~lvl~aDHgl~~st~~aar~~aSt~a~~~~av~agl~a~-Gp~hGGa~~~a~~~l~~~~~~~~~~~~~v~~~l~ 478 (608)
+++||++|||+||||+|+|| |++|+++||++|+|+||+|||+++ ||+||||+++|++||+++.+. ++++++|++.++
T Consensus 177 ~~~l~~~Lvl~ADHgln~St-faaRv~aSt~adl~~av~agl~al~GplHGGA~e~~~~~l~ei~~~-~~~~~~v~~~~~ 254 (375)
T PRK14033 177 VRAFEVSLILYAEHSFNAST-FTARVITSTLSDIYSAVTGAIGALKGPLHGGANEAVMHTMLEIGDP-ARAAEWLRDALA 254 (375)
T ss_pred HHHHHHHHHHHhccCCCcHH-HHHHHHhccCCCHHHHHHHHHhhccCccccChHHHHHHHHHHhCCh-hHHHHHHHHHHh
Confidence 99999999999999999999 899999999999999999999998 999999999999999999876 689999999999
Q ss_pred cCCCcCCCCCCCCCCCCCcHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHhhccCCcccchhhHHHHHHHHhcccCCC
Q 007327 479 KGIRVPGIGHRIKRGDNRDKRVELLQKFARTHF---PSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGM 555 (608)
Q Consensus 479 ~~~~ipGFGH~vy~~~~~DPRa~~L~~~~~~~~---~~~~~~~~a~~~e~~~~~~~~~l~~Nvd~~~a~l~~~lG~~~~~ 555 (608)
++++|||||||+||. .|||+++|+++++++. ..++++++++++++.+.+ .++++||||||+|+++++||||.++
T Consensus 255 ~~~~l~GFGH~vyk~--~DPRa~~L~~~l~~l~~~~~~~~~~~~~~~i~~~~~~-~~gl~pNvD~~~a~l~~~lGip~~~ 331 (375)
T PRK14033 255 RKEKVMGFGHRVYKH--GDSRVPTMKAALRRVAAVRDGQRWLDIYEALEKAMAE-ATGIKPNLDFPAGPAYYLMGFDIDF 331 (375)
T ss_pred CCCceecCCCCCCCC--CCchHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH-HhCCCCCcHHHHHHHHHHcCcCchh
Confidence 999999999999985 5999999999988773 457899999999998764 6889999999999999999999998
Q ss_pred CChhhHHHHHhhhcchhhhHhhhhhhhhhhHHHhhhcC
Q 007327 556 FSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLK 593 (608)
Q Consensus 556 f~~~~~~~~~p~~~~~~lf~~~R~~G~iAH~~Eq~~~~ 593 (608)
|++ +|+++|++||+|||+||++.+
T Consensus 332 ~~~--------------lf~~~R~~Gw~AH~~Eq~~~~ 355 (375)
T PRK14033 332 FTP--------------IFVMSRITGWTAHIMEQRASN 355 (375)
T ss_pred hhH--------------HHHHHHHHHHHHHHHHHHhcC
Confidence 888 999999999999999998644
No 33
>cd06105 ScCit1-2_like Saccharomyces cerevisiae (Sc) citrate synthases Cit1-2_like. Citrate synthases (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) with oxaloacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). Some CS proteins function as 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-neg
Probab=100.00 E-value=8.4e-53 Score=453.01 Aligned_cols=238 Identities=21% Similarity=0.232 Sum_probs=214.0
Q ss_pred chhhhHHHHhcccCCcchhhhheeccCCCCcccCCCCCCcccccCCcHHHHHHHhhcCCCCChhHHHHHHHHHHHhcCCC
Q 007327 335 PEDLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHG 414 (608)
Q Consensus 335 ~~~~~~~rllA~~p~i~A~~t~I~~~~g~~i~~~g~dl~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHg 414 (608)
....++++|+|++|+|+|++|++ ...|.+++.|+.+++ +.+||++|+ ++ + +++..++||.+||||||||
T Consensus 165 ~~~~~~~~LiAk~p~i~A~~yr~-~~~g~~~~~pd~~ls-------~a~Nfl~Ml-~~-~-~~~~~~~l~~~lvLhADHe 233 (427)
T cd06105 165 YVYEDSMDLIAKLPCVAAKIYRN-LYRGGKIIAIDSNLD-------WSANFANML-GY-T-DPQFTELMRLYLTIHSDHE 233 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhCCCCcCCCCCCcC-------HHHHHHHHh-cC-C-CHHHHHHHHHHHhhhcccc
Confidence 44578899999999999999993 135888999999998 899999998 33 3 4788999999999999999
Q ss_pred -CCCccchhhhhhccCCCChHHHHHHhhhcc-CCCCcCccHHHHHHHHHHhc------cCcCHHHHHHHHHHcCCCcCCC
Q 007327 415 -PCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYD------RGLSAYEFVESMKKKGIRVPGI 486 (608)
Q Consensus 415 -l~~st~~aar~~aSt~a~~~~av~agl~a~-Gp~hGGa~~~a~~~l~~~~~------~~~~~~~~v~~~l~~~~~ipGF 486 (608)
+|+|| ||+|+++||++|+|+|++||++++ ||+||||+++|++||+++.+ ..+++++||++.++++++||||
T Consensus 234 g~NaST-faarvvaSt~ad~ysav~agi~aL~GplHGGA~e~v~~~l~ei~~~~g~~~~~~~v~~~i~~~l~~g~~i~GF 312 (427)
T cd06105 234 GGNVSA-HTTHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTKLQKEVGKDVSDEQLREYVWKTLNSGRVVPGY 312 (427)
T ss_pred CccchH-HHHHHHhccCCCHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCCcccCC
Confidence 89999 999999999999999999999998 99999999999999988753 1246889999999999999999
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhh------ccCCcccchhhHHHHHHHHhccc-CCCCChh
Q 007327 487 GHRIKRGDNRDKRVELLQKFARTHFPSVKYMEYAVQVETYTLS------KANNLVLNVDGAIGSLFLDLLAG-SGMFSKQ 559 (608)
Q Consensus 487 GH~vy~~~~~DPRa~~L~~~~~~~~~~~~~~~~a~~~e~~~~~------~~~~l~~Nvd~~~a~l~~~lG~~-~~~f~~~ 559 (608)
|||+|+. .|||+++|+++++++...++++++++++|+++.+ +.++++||||||+|++++.||+| .++||+
T Consensus 313 GHrvyk~--~DPRa~~lk~~~~~~~~~~~~~~~~~~ie~~a~~~l~~~~~~~~l~pNVDfysg~l~~~lGip~~~~ft~- 389 (427)
T cd06105 313 GHAVLRK--TDPRYTCQREFALKHLPNDPLFKLVSQLYKIVPPVLTEQGKAKNPWPNVDAHSGVLLQYYGLTEMNYYTV- 389 (427)
T ss_pred CCCCCCC--CCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccCCCCCCChhHHHHHHHHHcCCCchhhhHH-
Confidence 9999985 5999999999999987888999999999986522 35899999999999999999999 689999
Q ss_pred hHHHHHhhhcchhhhHhhhhhhhhhhHHHhhhcCCCCCCCC
Q 007327 560 EIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHP 600 (608)
Q Consensus 560 ~~~~~~p~~~~~~lf~~~R~~G~iAH~~Eq~~~~~p~~~~~ 600 (608)
+|++||++||+||++||+...+||.||.
T Consensus 390 -------------lFa~sR~~GW~AH~~Eq~~~~~~I~RP~ 417 (427)
T cd06105 390 -------------LFGVSRALGVLSQLIWDRALGLPLERPK 417 (427)
T ss_pred -------------HHHHHHHHHHHHHHHHHHhCCCCccCCc
Confidence 9999999999999999997778898884
No 34
>PRK12349 citrate synthase 3; Provisional
Probab=100.00 E-value=1.3e-52 Score=447.13 Aligned_cols=244 Identities=16% Similarity=0.156 Sum_probs=215.8
Q ss_pred CCCCCCCCCCCCCCchhhhHHHHhcccCCcchhhhheeccCCCCcccCCCCCCcccccCCcHHHHHHHhhcCCCCChhHH
Q 007327 321 GKIPPVKEVTPPQIPEDLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCT 400 (608)
Q Consensus 321 G~~~~~~~~~~p~~~~~~~~~rllA~~p~i~A~~t~I~~~~g~~i~~~g~dl~~li~~~~~~~~~l~~l~~~~~~~~~~~ 400 (608)
+.++|...+..+... ...+++|++++|++.+++|+ +..|++++.|..+++ +.+||++|+ +|.+|++.+.
T Consensus 105 ~~~d~~~~~~~~~~~-~~~a~~lia~~p~i~a~~~r--~~~g~~~~~p~~~l~-------~a~nfl~ml-~g~~p~~~~~ 173 (369)
T PRK12349 105 AGYDNDIEDRSLEVN-KSRAYKLLSKVPNIVANSYH--ILNNEEPIEPLKELS-------YSANFLYML-TGKKPTELEE 173 (369)
T ss_pred cccCccccccCcHHH-HHHHHHHHHHHHHHHHHHHH--HhcCCCCCCCCcCCC-------HHHHHHHHH-hCCCCCHHHH
Confidence 345666555555544 36778999999999999999 667888888888887 788999988 6888999999
Q ss_pred HHHHHHHHHhcCCCCCCccchhhhhhccCCCChHHHHHHhhhcc-CCCCcCccHHHHHHHHHHhccCcCHHHHHHHHHHc
Q 007327 401 QFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKK 479 (608)
Q Consensus 401 ~~l~~~lvl~aDHgl~~st~~aar~~aSt~a~~~~av~agl~a~-Gp~hGGa~~~a~~~l~~~~~~~~~~~~~v~~~l~~ 479 (608)
++||++|||+||||+|+|| |++|+++||++|+|+||+|||+++ ||+||||+++|++||+++.+. ++++++|++.+++
T Consensus 174 ~~~~~~Lvl~ADH~lnaSt-fa~Rv~aSt~ad~~~av~agl~al~GplHGGA~e~~~~~l~~i~~~-~~~~~~v~~~l~~ 251 (369)
T PRK12349 174 KIFDRSLVLYSEHEMPNST-FTARVIASTQSDLYGALTGAVASLKGSLHGGANEAVMYMLLEAGTV-EKFEELLQKKLYN 251 (369)
T ss_pred HHHHHHHHHHhCcCccHHH-HHHHHHHccCccHHHHHHHHHHhccCccccChHHHHHHHHHHcCCH-HHHHHHHHHHHhc
Confidence 9999999999999999999 999999999999999999999998 999999999999999999876 6899999999999
Q ss_pred CCCcCCCCCCCCCCCCCcHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHhhccCCcccchhhHHHHHHHHhcccCCCC
Q 007327 480 GIRVPGIGHRIKRGDNRDKRVELLQKFARTHF---PSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMF 556 (608)
Q Consensus 480 ~~~ipGFGH~vy~~~~~DPRa~~L~~~~~~~~---~~~~~~~~a~~~e~~~~~~~~~l~~Nvd~~~a~l~~~lG~~~~~f 556 (608)
+++|||||||+|+. +.|||+++|+++++++. ...+++++++++|+++.+ .++++||||||+|+++++||||.++|
T Consensus 252 ~~~i~GFGH~vy~~-~~DPRa~~l~~~~~~l~~~~~~~~~~~~~~~~e~~~~~-~~gl~pNvD~~~a~l~~~lG~p~~~~ 329 (369)
T PRK12349 252 KEKIMGFGHRVYMK-KMDPRALMMKEALKQLCDVKGDYTLYEMCEAGEKIMEK-EKGLYPNLDYYAAPVYWMLGIPIQLY 329 (369)
T ss_pred CCcccCCCCCCCCC-CCCCcHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHH-hcCCCCCcHHHHHHHHHHcCCChhhh
Confidence 99999999999943 35999999999988773 234678899999888754 68999999999999999999988888
Q ss_pred ChhhHHHHHhhhcchhhhHhhhhhhhhhhHHHhhhcC
Q 007327 557 SKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLK 593 (608)
Q Consensus 557 ~~~~~~~~~p~~~~~~lf~~~R~~G~iAH~~Eq~~~~ 593 (608)
|+ +|+++|++||+|||+||++.+
T Consensus 330 ~~--------------lf~i~R~~Gw~AH~~Eq~~~~ 352 (369)
T PRK12349 330 TP--------------IFFSSRTVGLCAHVIEQHANN 352 (369)
T ss_pred hH--------------HHHHHHHHHHHHHHHHHHhcC
Confidence 88 999999999999999998653
No 35
>cd06118 citrate_synt_like_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and
Probab=100.00 E-value=2.4e-52 Score=445.07 Aligned_cols=252 Identities=21% Similarity=0.288 Sum_probs=223.2
Q ss_pred hcCCCCCCCCCCCCCCchhhhHHHHhcccCCcchhhhheeccCCCCcccCCCCCCcccccCCcHHHHHHHhhcCCCCChh
Q 007327 319 EEGKIPPVKEVTPPQIPEDLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRY 398 (608)
Q Consensus 319 ~~G~~~~~~~~~~p~~~~~~~~~rllA~~p~i~A~~t~I~~~~g~~i~~~g~dl~~li~~~~~~~~~l~~l~~~~~~~~~ 398 (608)
..+..+|...+..+.. ...++++|++++|++.+++|+ ++.|++++.|+.+++ +.+|+++|+ +|++|+++
T Consensus 97 ~l~~~~~~~~~~~~~~-~~~~a~~lia~~~~i~a~~~~--~~~g~~~~~p~~~~~-------~~~~~~~~~-~g~~p~~~ 165 (358)
T cd06118 97 ALGSFDPFARDKSPEA-RYEKAIRLIAKLPTIAANIYR--NREGLEIIAPDPDLS-------YAENFLYML-FGEEPDPE 165 (358)
T ss_pred hhhccCCccccCCHHH-HHHHHHHHHHHHHHHHHHHHH--HhCCCCCCCCCCccc-------HHHHHHHHh-cCCCCCHH
Confidence 3444556555544443 346788999999999999998 678888888888887 788888888 58889999
Q ss_pred HHHHHHHHHHHhcCCCCCCccchhhhhhccCCCChHHHHHHhhhcc-CCCCcCccHHHHHHHHHHhccCcCHHHHHHHHH
Q 007327 399 CTQFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMK 477 (608)
Q Consensus 399 ~~~~l~~~lvl~aDHgl~~st~~aar~~aSt~a~~~~av~agl~a~-Gp~hGGa~~~a~~~l~~~~~~~~~~~~~v~~~l 477 (608)
++++||++||++||||+|+|| |++|+++||++|+|+|++||++++ ||+||||+++|++||+++.+. ++++++|++.+
T Consensus 166 ~~~~l~~~Lvl~aDH~~n~St-fa~R~~aSt~ad~~~av~agl~al~GplHGGA~~~~~~~l~~~~~~-~~~~~~i~~~l 243 (358)
T cd06118 166 EAKAMDLALILHADHEGNAST-FTARVVASTLSDMYSAIAAAIAALKGPLHGGANEAVLKMLLEIGTP-ENVEAYIWKKL 243 (358)
T ss_pred HHHHHHHHHhhhcCCCCChHH-HHHHHHHccCCCHHHHHHHHHHHccCccccChHHHHHHHHHHhCCc-hHHHHHHHHHH
Confidence 999999999999999999999 999999999999999999999998 999999999999999999876 68999999999
Q ss_pred HcCCCcCCCCCCCCCCCCCcHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHhhcc--CCcccchhhHHHHHHHHhccc
Q 007327 478 KKGIRVPGIGHRIKRGDNRDKRVELLQKFARTHFP---SVKYMEYAVQVETYTLSKA--NNLVLNVDGAIGSLFLDLLAG 552 (608)
Q Consensus 478 ~~~~~ipGFGH~vy~~~~~DPRa~~L~~~~~~~~~---~~~~~~~a~~~e~~~~~~~--~~l~~Nvd~~~a~l~~~lG~~ 552 (608)
+++++|||||||+|+. .|||+++|+++++++.. .++++++++++|+++.+.. |+++||||||+|+++++||||
T Consensus 244 ~~~~~i~GfGH~vyk~--~DPRa~~L~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~r~l~pNvd~~~~~l~~~lg~p 321 (358)
T cd06118 244 ANKRRIMGFGHRVYKT--YDPRAKILKELAEELAEEKGDDKLFEIAEELEEIALEVLGEKGIYPNVDFYSGVVYKALGFP 321 (358)
T ss_pred hcCCeecCCCCCCCCC--CCCchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCCCCCcChHHHHHHHHHHcCcC
Confidence 9999999999999985 59999999999998854 5899999999999886543 699999999999999999999
Q ss_pred CCCCChhhHHHHHhhhcchhhhHhhhhhhhhhhHHHhhhcCCCCCCC
Q 007327 553 SGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRH 599 (608)
Q Consensus 553 ~~~f~~~~~~~~~p~~~~~~lf~~~R~~G~iAH~~Eq~~~~~p~~~~ 599 (608)
.++||+ +|++||++||+|||+||+..+.++.|+
T Consensus 322 ~~~~~~--------------lf~i~R~~Gw~AH~~Eq~~~~~~iiRP 354 (358)
T cd06118 322 TELFTP--------------LFAVSRAVGWLAHIIEYRENNQRLIRP 354 (358)
T ss_pred HHHHhH--------------HHHHHHHhHHHHHHHHHHhCCCCccCC
Confidence 988888 999999999999999999665456665
No 36
>cd06110 BSuCS-II_like Bacillus subtilis (Bs) citrate synthase (CS)-II_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains proteins similar to BsCS-II, the major CS of the gram-positive bacterium Bacillus subtilis. A mutation in the gene which encodes BsCS-II (citZ gene) has been described which resulted in a significant loss of CS activity, partial glutamate auxotrophy, and a sporulation deficiency, a
Probab=100.00 E-value=3.1e-52 Score=443.60 Aligned_cols=247 Identities=19% Similarity=0.233 Sum_probs=217.4
Q ss_pred CCCCCCCCCCCCCchhhhHHHHhcccCCcchhhhheeccCCCCcccCCCCCCcccccCCcHHHHHHHhhcCCCCChhHHH
Q 007327 322 KIPPVKEVTPPQIPEDLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQ 401 (608)
Q Consensus 322 ~~~~~~~~~~p~~~~~~~~~rllA~~p~i~A~~t~I~~~~g~~i~~~g~dl~~li~~~~~~~~~l~~l~~~~~~~~~~~~ 401 (608)
..+|...+..+.. ....++++++++|+|+++.++ +..|.+.+.++.+++ +.+||++|+ +|++|++++++
T Consensus 100 ~~~~~~~~~~~~~-~~~~a~~lla~~p~i~a~~~~--~~~~~~~~~p~~~~~-------~a~~~l~~l-~g~~p~~~~~~ 168 (356)
T cd06110 100 LYDPEADDMSREA-NLRKAIRLIAKMPTIVAAFHR--IRNGLEPVAPDPDLS-------HAANFLYML-TGEKPSEEAAR 168 (356)
T ss_pred hcCCCcccCCHHH-HHHHHHHHHHHHHHHHHHHHH--HhCCCCCCCCCCCCC-------HHHHHHHHh-cCCCCCHHHHH
Confidence 4455444443332 236788999999999999888 677888888888887 778888887 78888999999
Q ss_pred HHHHHHHHhcCCCCCCccchhhhhhccCCCChHHHHHHhhhcc-CCCCcCccHHHHHHHHHHhccCcCHHHHHHHHHHcC
Q 007327 402 FIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKG 480 (608)
Q Consensus 402 ~l~~~lvl~aDHgl~~st~~aar~~aSt~a~~~~av~agl~a~-Gp~hGGa~~~a~~~l~~~~~~~~~~~~~v~~~l~~~ 480 (608)
+||++||++||||+|+|| |++|+++||++|+|+|++|||+++ ||+||||++.+++||+++.+. ++++++|+++++++
T Consensus 169 ~l~~~Lvl~aDHg~n~St-fa~Rv~aSt~ad~~~av~agl~al~GplHGgA~~~~~~~l~~~~~~-~~~~~~v~~~~~~~ 246 (356)
T cd06110 169 AFDVALILHADHELNAST-FAARVVASTLSDMYSAVTAAIGALKGPLHGGANERVMKMLLEIGSV-DNVAAYVKDKLANK 246 (356)
T ss_pred HHHHHHHHhccCCCchhH-HHHHHHHhcCCCHHHHHHHHHhhcCCCcccCcHHHHHHHHHHhCCH-HHHHHHHHHHHhcC
Confidence 999999999999999999 999999999999999999999998 999999999999999999865 68999999999999
Q ss_pred CCcCCCCCCCCCCCCCcHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHhhccCCcccchhhHHHHHHHHhcccCCCCC
Q 007327 481 IRVPGIGHRIKRGDNRDKRVELLQKFARTHF---PSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFS 557 (608)
Q Consensus 481 ~~ipGFGH~vy~~~~~DPRa~~L~~~~~~~~---~~~~~~~~a~~~e~~~~~~~~~l~~Nvd~~~a~l~~~lG~~~~~f~ 557 (608)
++|||||||+||. .|||+++|+++++++. +.++++++++++|+.+.+ .++++||||||+|+++++||+|.++||
T Consensus 247 ~~i~GfGH~vy~~--~DPRa~~L~~~~~~~~~~~~~~~~~~~~~~ie~~~~~-~~~l~pNvd~~~a~l~~~lg~p~~~~~ 323 (356)
T cd06110 247 EKIMGFGHRVYKT--GDPRAKHLREMSRRLGKETGEPKWYEMSEAIEQAMRD-EKGLNPNVDFYSASVYYMLGIPVDLFT 323 (356)
T ss_pred CeecCCCCccCCC--CCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-ccCCCcChHHHHHHHHHHcCcChhhhh
Confidence 9999999999985 5999999999999883 467899999999998865 589999999999999999999988888
Q ss_pred hhhHHHHHhhhcchhhhHhhhhhhhhhhHHHhhhcCCCCCCC
Q 007327 558 KQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRH 599 (608)
Q Consensus 558 ~~~~~~~~p~~~~~~lf~~~R~~G~iAH~~Eq~~~~~p~~~~ 599 (608)
+ +|+++|++||+|||+||++.+ .+.|+
T Consensus 324 ~--------------lf~i~R~~Gw~AH~~Eq~~~~-~iiRP 350 (356)
T cd06110 324 P--------------IFAISRVSGWCAHILEQYFNN-RLIRP 350 (356)
T ss_pred H--------------HHHHHHHHHHHHHHHHHHHcC-CccCC
Confidence 8 999999999999999998643 34444
No 37
>PRK09569 type I citrate synthase; Reviewed
Probab=100.00 E-value=3.3e-52 Score=449.56 Aligned_cols=236 Identities=18% Similarity=0.212 Sum_probs=209.9
Q ss_pred chhhhHHHHhcccCCcchhhhheecc-CCCCcccCCCCCCcccccCCcHHHHHHHhhcCCCCChhHHHHHHHHHHHhcCC
Q 007327 335 PEDLNTAIKSGKVRAPTHIISTISDD-RGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADH 413 (608)
Q Consensus 335 ~~~~~~~rllA~~p~i~A~~t~I~~~-~g~~i~~~g~dl~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDH 413 (608)
....++++|+|++|+|+|++|+ ++ .|++++.|+.+++ +.+||++|+ ++. +...++||++|||||||
T Consensus 168 ~~~~~~~rliA~~p~i~A~~yr--~~~~g~~~~~p~~~ls-------~a~NFl~Ml-~~~---~~~~~~l~~~LiL~ADH 234 (437)
T PRK09569 168 YMYEDASDLVARIPVIAAYIYN--LKYKGDKQIPSDPELD-------YGANFAHMI-GQP---KPYKDVARMYFILHSDH 234 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHhCCCCCCCCCCCcC-------HHHHHHHHh-cCC---chHHHHHHHHHhhhhcc
Confidence 3457889999999999999999 55 4677889999998 899999998 442 55689999999999999
Q ss_pred C-CCCccchhhhhhccCCCChHHHHHHhhhcc-CCCCcCccHHHHHHHHHHhc-------cCcCHHHHHHHHHHcCCCcC
Q 007327 414 G-PCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYD-------RGLSAYEFVESMKKKGIRVP 484 (608)
Q Consensus 414 g-l~~st~~aar~~aSt~a~~~~av~agl~a~-Gp~hGGa~~~a~~~l~~~~~-------~~~~~~~~v~~~l~~~~~ip 484 (608)
| +|+|| |++|+++||++|+|+|++|||+++ ||+||||+++|++||+++.+ ..++++++|++.++++++||
T Consensus 235 e~~naST-faaRvvaSt~ad~ysav~Agi~aL~GplHGGA~e~v~~~l~~i~~~~~~~~~~~~~~~~~v~~~l~~~~ri~ 313 (437)
T PRK09569 235 ESGNVSA-HTTHLVASALSDAYYSYSAGLNGLAGPLHGLANQEVLGWIQQFQEKLGGEEPTKEQVEQALWDTLNAGQVIP 313 (437)
T ss_pred CCCcchH-HHHHHHhccCCCHHHHHHHHHHhccCCccCCchHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCccc
Confidence 9 79999 999999999999999999999998 99999999999999998862 22578999999999999999
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhh------ccCCcccchhhHHHHHHHHhccc-CCCCC
Q 007327 485 GIGHRIKRGDNRDKRVELLQKFARTHFPSVKYMEYAVQVETYTLS------KANNLVLNVDGAIGSLFLDLLAG-SGMFS 557 (608)
Q Consensus 485 GFGH~vy~~~~~DPRa~~L~~~~~~~~~~~~~~~~a~~~e~~~~~------~~~~l~~Nvd~~~a~l~~~lG~~-~~~f~ 557 (608)
|||||+|+. .|||+++|+++++++...++++++++++|+++.+ +.++++||||||+|++++.|||| .+|||
T Consensus 314 GFGHrvyk~--~DPRa~~L~~~a~~~~~~~~~~~ia~~~e~v~~~~~~~~~~~~~l~pNVD~~sg~l~~~lGip~~~~~t 391 (437)
T PRK09569 314 GYGHAVLRK--TDPRYTAQREFCLKHLPDDPLFKLVAMIFEVAPGVLTEHGKTKNPWPNVDAQSGVIQWYYGVKEWDFYT 391 (437)
T ss_pred CCCCCCCCC--CCCchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCChHHHHHHHHHHcCCCchhhhH
Confidence 999999985 5999999999999998888999999999986532 35889999999999999999999 59999
Q ss_pred hhhHHHHHhhhcchhhhHhhhhhhhhhhHHHhhhcCCCCCCCC
Q 007327 558 KQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHP 600 (608)
Q Consensus 558 ~~~~~~~~p~~~~~~lf~~~R~~G~iAH~~Eq~~~~~p~~~~~ 600 (608)
+ +|++||++||+||++||+....|+.|+.
T Consensus 392 ~--------------lFaisR~~Gw~AH~iEq~~~~~~i~RP~ 420 (437)
T PRK09569 392 V--------------LFGVGRALGVMANITWDRGLGYAIERPK 420 (437)
T ss_pred H--------------HHHHHHHHHHHHHHHHHHhCCCCccCCc
Confidence 9 9999999999999999996555666663
No 38
>TIGR01800 cit_synth_II 2-methylcitrate synthase/citrate synthase II. Members of this family are dimeric enzymes with activity as 2-methylcitrate synthase, citrate synthase, or both. Many Gram-negative species have a hexameric citrate synthase, termed citrate synthase I (TIGR01798). Members of this family (TIGR01800) appear as a second citrate synthase isozyme but typically are associated with propionate metabolism and synthesize 2-methylcitrate from propionyl-CoA; citrate synthase activity may be incidental. A number of species, including Thermoplasma acidophilum, Pyrococcus furiosus, and the Antarctic bacterium DS2-3R have a bifunctional member of this family as the only citrate synthase isozyme.
Probab=100.00 E-value=3.1e-52 Score=444.81 Aligned_cols=243 Identities=20% Similarity=0.262 Sum_probs=216.3
Q ss_pred CCCCCCCCCCCCCCchhhhHHHHhcccCCcchhhhheeccCCCCcccCCCCCCcccccCCcHHHHHHHhhcCCCCChhHH
Q 007327 321 GKIPPVKEVTPPQIPEDLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCT 400 (608)
Q Consensus 321 G~~~~~~~~~~p~~~~~~~~~rllA~~p~i~A~~t~I~~~~g~~i~~~g~dl~~li~~~~~~~~~l~~l~~~~~~~~~~~ 400 (608)
+..+|...+..+. .....++++++++|++.+++|+ ++.|++++.|..+++ +.+||++|+ +|.+|+++++
T Consensus 99 ~~~d~~~~~~~~~-~~~~~a~~lia~~p~i~a~~~~--~~~g~~~~~p~~~~~-------~~~n~l~ml-~g~~p~~~~~ 167 (368)
T TIGR01800 99 GALDPEAFGHTPE-EARDIAIRLIAKLPTIVAYWYR--IRNGLEIVAPKEDDS-------HAANFLYML-HGEEPSKEEE 167 (368)
T ss_pred hccCcccccCCHH-HHHHHHHHHHHHHHHHHHHHHH--HhcCCCCcCCCCCcc-------HHHHHHHHh-cCCCCCHHHH
Confidence 3345544444443 3347789999999999999999 667888888888876 667999988 5888899999
Q ss_pred HHHHHHHHHhcCCCCCCccchhhhhhccCCCChHHHHHHhhhcc-CCCCcCccHHHHHHHHHHhccCcCHHHHHHHHHHc
Q 007327 401 QFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKK 479 (608)
Q Consensus 401 ~~l~~~lvl~aDHgl~~st~~aar~~aSt~a~~~~av~agl~a~-Gp~hGGa~~~a~~~l~~~~~~~~~~~~~v~~~l~~ 479 (608)
++||++|||+||||+|+|| |++|+++||++|+|+|++|||+++ ||+||||++.|++||+++.+. ++++++|++.+++
T Consensus 168 ~~l~~~Lvl~ADHg~n~St-~aaRv~aSt~adl~~av~agl~al~Gp~HGGA~~~~~~~l~~i~~~-~~~~~~v~~~l~~ 245 (368)
T TIGR01800 168 KAMDIALILYAEHEFNAST-FAARVAASTLSDMYSAITAAIGALKGPLHGGANEAVMAMLDEIGDP-DKAEAWIRKALEN 245 (368)
T ss_pred HHHHHHHhHhccCCCchHH-HHHHHHhccCCCHHHHHHHHHhhcCCccccCHHHHHHHHHHHhcCh-HHHHHHHHHHHHC
Confidence 9999999999999999999 999999999999999999999998 999999999999999999876 5899999999999
Q ss_pred CCCcCCCCCCCCCCCCCcHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHhhccCCcccchhhHHHHHHHHhcccCCCC
Q 007327 480 GIRVPGIGHRIKRGDNRDKRVELLQKFARTHF---PSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMF 556 (608)
Q Consensus 480 ~~~ipGFGH~vy~~~~~DPRa~~L~~~~~~~~---~~~~~~~~a~~~e~~~~~~~~~l~~Nvd~~~a~l~~~lG~~~~~f 556 (608)
+++|||||||+||. .|||++.|+++++++. ..++++++++++|+++.+ .++++||||||+|+++++||||.++|
T Consensus 246 ~~~i~GfGH~vy~~--~DPRa~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~pNvD~~~a~l~~~lg~p~~~~ 322 (368)
T TIGR01800 246 KERIMGFGHRVYKT--YDPRAKILKEYAKKLSAKEGDSKWYEIAERLEDVMEK-EKGIYPNVDFYSGSVYYSMGIPTDLF 322 (368)
T ss_pred CCccCCCCCCCCCC--CCchHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH-hcCCCCChHHHHHHHHHHcCcCHHHh
Confidence 99999999999985 5999999999999873 467899999999998765 68999999999999999999988888
Q ss_pred ChhhHHHHHhhhcchhhhHhhhhhhhhhhHHHhhhcC
Q 007327 557 SKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLK 593 (608)
Q Consensus 557 ~~~~~~~~~p~~~~~~lf~~~R~~G~iAH~~Eq~~~~ 593 (608)
|+ +|++||++||+|||+||+..+
T Consensus 323 ~~--------------lf~~~R~~Gw~AH~~Eq~~~~ 345 (368)
T TIGR01800 323 TP--------------IFAMSRVSGWTAHIIEQVENN 345 (368)
T ss_pred hh--------------HHHHHHHHHHHHHHHHHHhcC
Confidence 88 999999999999999998543
No 39
>PRK14032 citrate synthase; Provisional
Probab=100.00 E-value=2.5e-52 Score=452.69 Aligned_cols=253 Identities=18% Similarity=0.227 Sum_probs=212.7
Q ss_pred CCCCCCCCCCCCCCchhhhHHHHhcccCCcchhhhheec-cC-CCC--cccCCCCCCcccccCCcHHHHHHHhhcCC-CC
Q 007327 321 GKIPPVKEVTPPQIPEDLNTAIKSGKVRAPTHIISTISD-DR-GEE--PCYAGVPMSSIVEQGYGVGDVISLLWFKR-SL 395 (608)
Q Consensus 321 G~~~~~~~~~~p~~~~~~~~~rllA~~p~i~A~~t~I~~-~~-g~~--i~~~g~dl~~li~~~~~~~~~l~~l~~~~-~~ 395 (608)
+.++|...+..+. ....++++|+|++|+|+|++|++.. .. |++ +..|+.+++ +.+||++|+ +|+ +|
T Consensus 150 ~~~~~~~~~~~~~-~~~~~a~rLiA~~p~i~A~~yr~~~~~~~g~~~~~~~p~~~ls-------~a~nfl~ml-~g~~~p 220 (447)
T PRK14032 150 YSYDDNPDDTSID-NVLRQSISLIARFPTLAVYAYQAYRHYHDGKSLYIHPPKPELS-------TAENILYML-RPDNKY 220 (447)
T ss_pred hhcCCCcccCCHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccccCCCCCCC-------HHHHHHHHh-ccCCCC
Confidence 3455554433332 3347789999999999999998532 33 665 457899988 889999998 577 78
Q ss_pred ChhHHHHHHHHHHHhcCCC-CCCccchhhhhhccCCCChHHHHHHhhhcc-CCCCcCccHHHHHHHHHHhc------cCc
Q 007327 396 PRYCTQFIEICIMLCADHG-PCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYD------RGL 467 (608)
Q Consensus 396 ~~~~~~~l~~~lvl~aDHg-l~~st~~aar~~aSt~a~~~~av~agl~a~-Gp~hGGa~~~a~~~l~~~~~------~~~ 467 (608)
++.++++||++|||||||| +|+|| |++|+++||++|+|+||+||++++ ||+||||+++|++||+++.+ ..+
T Consensus 221 ~~~~~~~ld~~LiL~ADHg~~naST-faaRv~aSt~ad~ysavaagi~aL~GplHGGA~e~v~~~l~ei~~~~~~~~s~~ 299 (447)
T PRK14032 221 TELEARLLDLALVLHAEHGGGNNST-FTTRVVSSSGTDTYSAIAAAIGSLKGPKHGGANIKVMEMFEDIKENVKDWEDED 299 (447)
T ss_pred CHHHHHHHHHHHHHHhccCCCchhH-HHHHHHHccCCcHHHHHHHHHHhccCccccCHHHHHHHHHHHHHhhccCCCCHH
Confidence 8899999999999999999 79999 999999999999999999999998 99999999999999999973 224
Q ss_pred CHHHHHHHHHH-----cCCCcCCCCCCCCCCCCCcHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHhh-------ccC
Q 007327 468 SAYEFVESMKK-----KGIRVPGIGHRIKRGDNRDKRVELLQKFARTHF---PSVKYMEYAVQVETYTLS-------KAN 532 (608)
Q Consensus 468 ~~~~~v~~~l~-----~~~~ipGFGH~vy~~~~~DPRa~~L~~~~~~~~---~~~~~~~~a~~~e~~~~~-------~~~ 532 (608)
++++++++.++ ++++|||||||+||. .|||+++|+++++++. ...+++++++.+|+++.+ ..|
T Consensus 300 ~v~~~v~~~l~~~~~~~~~ri~GFGHrvyk~--~DPRa~~L~~~~~~l~~~~g~~~~~~~~~~~e~~~~~~~~~~~~~~k 377 (447)
T PRK14032 300 EIADYLTKILNKEAFDKSGLIYGMGHAVYTI--SDPRAVILKKFAEKLAKEKGREEEFNLYEKIEKLAPELIAEERGIYK 377 (447)
T ss_pred HHHHHHHHHHhccccccCCcccCCCCCCCCC--CCccHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhccCC
Confidence 67889998887 568999999999985 5999999999999874 345678888888876532 258
Q ss_pred CcccchhhHHHHHHHHhcccCCCCChhhHHHHHhhhcchhhhHhhhhhhhhhhHHHhhhc----CCCCCCC
Q 007327 533 NLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRL----KQPLYRH 599 (608)
Q Consensus 533 ~l~~Nvd~~~a~l~~~lG~~~~~f~~~~~~~~~p~~~~~~lf~~~R~~G~iAH~~Eq~~~----~~p~~~~ 599 (608)
+++||||||+|+++++||||.++||+ +|++||++||+|||+||+.. .||...+
T Consensus 378 ~l~pNVDfysa~i~~~lGip~~~~t~--------------lFaisR~~Gw~AH~~Eq~~~~~~i~RP~~~Y 434 (447)
T PRK14032 378 GVSANVDFYSGFVYDMLGIPEELYTP--------------LFAIARIVGWSAHRIEELVNGGKIIRPAYKS 434 (447)
T ss_pred CCCcChhhHHHHHHHHcCCChhhhhh--------------hHHHHhHHHHHHHHHHHHhcCCceeccccee
Confidence 99999999999999999999999999 99999999999999999832 2565555
No 40
>cd06113 citrate_synt_like_1_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) a carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) h
Probab=100.00 E-value=4e-52 Score=447.66 Aligned_cols=256 Identities=18% Similarity=0.229 Sum_probs=214.4
Q ss_pred HhcCCCCCCCCCCCCCCchhhhHHHHhcccCCcchhhhheec--cCCC--CcccCCCCCCcccccCCcHHHHHHHhhcC-
Q 007327 318 VEEGKIPPVKEVTPPQIPEDLNTAIKSGKVRAPTHIISTISD--DRGE--EPCYAGVPMSSIVEQGYGVGDVISLLWFK- 392 (608)
Q Consensus 318 ~~~G~~~~~~~~~~p~~~~~~~~~rllA~~p~i~A~~t~I~~--~~g~--~i~~~g~dl~~li~~~~~~~~~l~~l~~~- 392 (608)
...+.++|...+..+ .....++++|+|++|+|+|++|++.. ..++ +++.|+.+++ +.+||++|+ +|
T Consensus 117 ~~l~~~~~~~~~~~~-~~~~~~a~rLiA~~p~i~A~~yr~~~~~~~~~~~~~~~p~~~ls-------~a~nfl~ml-~g~ 187 (406)
T cd06113 117 LALYSYDDKPDDISL-ENVLRQSIQLIARLPTIAVYAYQAKRHYYDGESLYIHHPQPELS-------TAENILSML-RPD 187 (406)
T ss_pred HhccccCCCcccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccCCCCCCC-------HHHHHHHHh-ccC
Confidence 345556665443333 23457889999999999999999532 2334 4667888888 888999988 67
Q ss_pred CCCChhHHHHHHHHHHHhcCCC-CCCccchhhhhhccCCCChHHHHHHhhhcc-CCCCcCccHHHHHHHHHHhc------
Q 007327 393 RSLPRYCTQFIEICIMLCADHG-PCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYD------ 464 (608)
Q Consensus 393 ~~~~~~~~~~l~~~lvl~aDHg-l~~st~~aar~~aSt~a~~~~av~agl~a~-Gp~hGGa~~~a~~~l~~~~~------ 464 (608)
++|+++++++||++|||||||| +|+|| |++|+++||++|+|+|++|||+++ ||+||||+++|++||+++.+
T Consensus 188 ~~p~~~~~~~l~~~Lvl~ADHg~~naST-~aaRv~aSt~ad~~~avaagi~al~GplHGGA~e~v~~~l~~i~~~~~~~~ 266 (406)
T cd06113 188 KKYTELEAKLLDLCLVLHAEHGGGNNST-FTTRVVSSSGTDTYSAIAAAIGSLKGPRHGGANIKVMEMLEDIKENVKDWT 266 (406)
T ss_pred CCCCHHHHHHHHHHHhhhhccCCCcchH-HHHHHHHccCCCHHHHHHHHHHHccCccccChHHHHHHHHHHHHhhccCCC
Confidence 4788889999999999999999 89999 999999999999999999999998 99999999999999999974
Q ss_pred cCcCHHHHHHHHHHcC-----CCcCCCCCCCCCCCCCcHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHh-------h
Q 007327 465 RGLSAYEFVESMKKKG-----IRVPGIGHRIKRGDNRDKRVELLQKFARTHF---PSVKYMEYAVQVETYTL-------S 529 (608)
Q Consensus 465 ~~~~~~~~v~~~l~~~-----~~ipGFGH~vy~~~~~DPRa~~L~~~~~~~~---~~~~~~~~a~~~e~~~~-------~ 529 (608)
..+++++|+++.++++ ++|||||||+||. .|||+++|+++++++. ..++++++++++|+++. .
T Consensus 267 ~~~~v~~~v~~~l~~~~~~~~~~l~GFGHrvyk~--~DPRa~~L~~~~~~l~~~~~~~~~~~~~~~ie~~~~~~~~~~~~ 344 (406)
T cd06113 267 DEDEVRAYLRKILNKEAFDKSGLIYGMGHAVYTL--SDPRAVVLKKYARSLAKEKGREEEFALYERIERLAPEVIAEERG 344 (406)
T ss_pred CHHHHHHHHHHHHhccccccCceeecCCCCCCCC--CCccHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHhhc
Confidence 2257888999998876 5999999999985 5999999999998873 34569999999998652 2
Q ss_pred ccCCcccchhhHHHHHHHHhcccCCCCChhhHHHHHhhhcchhhhHhhhhhhhhhhHHHhhhcCCCCCCC
Q 007327 530 KANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRH 599 (608)
Q Consensus 530 ~~~~l~~Nvd~~~a~l~~~lG~~~~~f~~~~~~~~~p~~~~~~lf~~~R~~G~iAH~~Eq~~~~~p~~~~ 599 (608)
+.|+++||||||+|+++++||||.++||+ +|++||++||+|||+||+.....+.|+
T Consensus 345 ~~r~l~pNvD~~sa~l~~~lG~p~~~~t~--------------lF~isR~~Gw~AH~~Eq~~~~~~l~RP 400 (406)
T cd06113 345 IGKTVCANVDFYSGFVYKMLGIPQELYTP--------------LFAVARIVGWCAHRIEELLNSGRIIRP 400 (406)
T ss_pred cCCCCCCChHHHHHHHHHHcCCChhhhhh--------------HHHHHhHHHHHHHHHHHHhcCCceecc
Confidence 35899999999999999999999999999 999999999999999998543334444
No 41
>cd06102 citrate_synt_like_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and
Probab=100.00 E-value=2.7e-52 Score=428.00 Aligned_cols=224 Identities=25% Similarity=0.318 Sum_probs=204.0
Q ss_pred hhhheeccCCCCcccCCCCCCcccccCCcHHHHHHHhhcCCCC-------------------------------ChhHHH
Q 007327 353 IISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSL-------------------------------PRYCTQ 401 (608)
Q Consensus 353 ~~t~I~~~~g~~i~~~g~dl~~li~~~~~~~~~l~~l~~~~~~-------------------------------~~~~~~ 401 (608)
+.|.|+....+.++|||+|+.+|+++. +|+++.++||.++.+ ++.+.+
T Consensus 21 ~~t~It~i~~~~~~yRG~da~~L~~~~-~~e~va~LLw~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (282)
T cd06102 21 LESAITLITEGRLFYRGRDAVELAETA-TLEEVAALLWDGDEAARLLRLLAAALLGAAPSDAPVHRRLARAWGLDPAAAD 99 (282)
T ss_pred EEeeeEEEeCCeeEEcCccHHHHHhcC-CHHHHHHHHHcCCchHHHHHHHHHHhccCCCCcccHHHHHHHHhcCCHHHHH
Confidence 446666666677999999999999999 999999999988877 778899
Q ss_pred HHHHHHHHhcCCCCCCccchhhhhhccCCCChHHHHHHhhhcc-CCCCcCccHHHHHHHHHHhccCcCHHHHHHHHHHcC
Q 007327 402 FIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKG 480 (608)
Q Consensus 402 ~l~~~lvl~aDHgl~~st~~aar~~aSt~a~~~~av~agl~a~-Gp~hGGa~~~a~~~l~~~~~~~~~~~~~v~~~l~~~ 480 (608)
+||++|||+||||+|+|| |++|+++||++|+|+||+|||+++ ||+||||++.|++||+++.+. ++++++|+++++++
T Consensus 100 ~l~~~LVL~ADHgln~St-~aaRv~AStgadl~~avaagl~al~Gp~HGGA~~~a~~~l~e~~~~-~~~~~~v~~~l~~g 177 (282)
T cd06102 100 LLRRALVLLADHELNAST-FAARVAASTGASLYAAVLAGLAALSGPRHGGATARVEALLDEALRA-GDAEAAVRERLRRG 177 (282)
T ss_pred HHHHHHHHHhccCCCcHH-HHHHHHhccCCcHHHHHHHHHHhCCCCCccCHHHHHHHHHHHhcCC-ccHHHHHHHHHHcC
Confidence 999999999999999999 899999999999999999999998 999999999999999999876 58999999999999
Q ss_pred CCcCCCCCCCCCCCCCcHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhccCCcccchhhHHHHHHHHhcccCCCCChhh
Q 007327 481 IRVPGIGHRIKRGDNRDKRVELLQKFARTHFPSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFSKQE 560 (608)
Q Consensus 481 ~~ipGFGH~vy~~~~~DPRa~~L~~~~~~~~~~~~~~~~a~~~e~~~~~~~~~l~~Nvd~~~a~l~~~lG~~~~~f~~~~ 560 (608)
++|||||||+||. .|||++.|+++++++.. +++++++++|+.+.+ .++++|||||++++++++||||.++|++
T Consensus 178 ~~ipGFGH~vy~~--~DPRa~~L~~~~~~~~~--~~~~~a~~ve~~~~~-~~gl~pNvD~a~a~l~~~lG~p~~~~~~-- 250 (282)
T cd06102 178 EALPGFGHPLYPD--GDPRAAALLAALRPLGP--AAPPAARALIEAARA-LTGARPNIDFALAALTRALGLPAGAAFA-- 250 (282)
T ss_pred CcccCCCCCCCCC--CCccHHHHHHHHHHHhh--HHHHHHHHHHHHHHH-HHCCCCChHHHHHHHHHHcCCChhhcch--
Confidence 9999999999985 59999999999999876 999999999998765 5789999999999999999988887777
Q ss_pred HHHHHhhhcchhhhHhhhhhhhhhhHHHhhhcCCCCCCC
Q 007327 561 IDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRH 599 (608)
Q Consensus 561 ~~~~~p~~~~~~lf~~~R~~G~iAH~~Eq~~~~~p~~~~ 599 (608)
+|+++|++||+||++||++.+ .+.|+
T Consensus 251 ------------lF~~~R~~GwiAH~~Eq~~~~-~liRP 276 (282)
T cd06102 251 ------------LFALGRSAGWIAHALEQRAQG-KLIRP 276 (282)
T ss_pred ------------HHHHHHHHHHHHHHHHHHhcC-CCcCC
Confidence 999999999999999999664 34444
No 42
>PRK06224 citrate synthase; Provisional
Probab=100.00 E-value=3e-52 Score=426.91 Aligned_cols=239 Identities=28% Similarity=0.381 Sum_probs=215.2
Q ss_pred chhhhheeccCCCCcccCCCCCCcccccCCcHHHHHHHhhcCCCCChhHHHHHHHHHHHhcCCCCCCccchhhhhhccCC
Q 007327 351 THIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAG 430 (608)
Q Consensus 351 ~A~~t~I~~~~g~~i~~~g~dl~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHgl~~st~~aar~~aSt~ 430 (608)
..+.|+||+..+++++|||+|+.||+++. +|+++++++++|+.|++++.++|+++||+++|||+|+|| |++|+++||+
T Consensus 7 ~~~~T~i~~~~~~~l~yrG~~~~dL~~~~-sf~e~~~lll~G~lP~~~e~r~f~a~Lv~~adHg~~~St-~aar~~ast~ 84 (263)
T PRK06224 7 KWWRTSISDVTPEEIYVRGYDLEDLIGKL-SFTDMIFLLLRGRLPTPNEARLLDAVLVALVDHGLTPSA-AAARMTASGG 84 (263)
T ss_pred CCCceeeeeecCCeeEECCccHHHHhhcC-CHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhccCCCcHH-HHHHHHHhcC
Confidence 36789999988888999999999999887 999999999999999999999999999999999999998 9999999999
Q ss_pred CChHHHHHHhhhccCCCCcCccHHHHHHHHHHhcc-------CcCHHHHHHHHHHcCCCcCCCCCCCCCCCCCcHHHHHH
Q 007327 431 KDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDR-------GLSAYEFVESMKKKGIRVPGIGHRIKRGDNRDKRVELL 503 (608)
Q Consensus 431 a~~~~av~agl~a~Gp~hGGa~~~a~~~l~~~~~~-------~~~~~~~v~~~l~~~~~ipGFGH~vy~~~~~DPRa~~L 503 (608)
+|+++|++|||+++||+||||+++|++||+++... .++++++|+++++++++|||||||+|+. +|||++.|
T Consensus 85 ~~l~~av~agl~a~G~~hgGa~~~a~~~l~e~~~~~~~~~~~~~~~~~~v~~~~~~~~~ipGFGH~~y~~--~DPRa~~L 162 (263)
T PRK06224 85 ESLQGAVAAGLLALGSVHGGAGEQAAELLQEIAAAADAGADLDAAARAIVAEYRAAGKRVPGFGHPLHKP--VDPRAPRL 162 (263)
T ss_pred ccHHHHHHHHHhhcccccCChhHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHcCCCcCCCCCCCCCC--CCchHHHH
Confidence 99999999999999999999999999999999732 1357789999999999999999999985 69999999
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHhh-ccCCcccchhhHHHHHHHHhcccCCCCChhhHHHHHhhhcchhhhHhhhhhhh
Q 007327 504 QKFARTHFPSVKYMEYAVQVETYTLS-KANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGL 582 (608)
Q Consensus 504 ~~~~~~~~~~~~~~~~a~~~e~~~~~-~~~~l~~Nvd~~~a~l~~~lG~~~~~f~~~~~~~~~p~~~~~~lf~~~R~~G~ 582 (608)
+++++++...++++++++++++++.+ ++|+++|||||++|+++++||||.++|++ +|+++|++||
T Consensus 163 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~l~~Nvd~~~a~l~~~lG~p~~~~~~--------------lf~~~R~~G~ 228 (263)
T PRK06224 163 LALAREAGVAGRHCRLAEALEAALAAAKGKPLPLNVDGAIAAILADLGFPPALARG--------------LFVISRAAGL 228 (263)
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHcCCChHHHhH--------------HHHHHHHHHH
Confidence 99999998888999999999998755 35679999999999999999988887777 9999999999
Q ss_pred hhhHHHhhhcCCC--CCCCCCcccccc
Q 007327 583 IGHTFDQKRLKQP--LYRHPWEDVLYT 607 (608)
Q Consensus 583 iAH~~Eq~~~~~p--~~~~~~~~~~y~ 607 (608)
+||++||++.+.. +.++.|+.+.|.
T Consensus 229 ~AH~~Eq~~~~~~~r~~~~~~~~~~Y~ 255 (263)
T PRK06224 229 VAHVWEELQQPIGFRIWDPAEEAVEYT 255 (263)
T ss_pred HHHHHHHHhCCCCcCCCCChhhcceec
Confidence 9999999966532 233367788886
No 43
>PF00285 Citrate_synt: Citrate synthase; InterPro: IPR002020 Citrate synthase 2.3.3.1 from EC is a member of a small family of enzymes that can directly form a carbon-carbon bond without the presence of metal ion cofactors. It catalyses the first reaction in the Krebs' cycle, namely the conversion of oxaloacetate and acetyl-coenzyme A into citrate and coenzyme A. This reaction is important for energy generation and for carbon assimilation. The reaction proceeds via a non-covalently bound citryl-coenzyme A intermediate in a 2-step process (aldol-Claisen condensation followed by the hydrolysis of citryl-CoA). Citrate synthase enzymes are found in two distinct structural types: type I enzymes (found in eukaryotes, Gram-positive bacteria and archaea) form homodimers and have shorter sequences than type II enzymes, which are found in Gram-negative bacteria and are hexameric in structure. In both types, the monomer is composed of two domains: a large alpha-helical domain consisting of two structural repeats, where the second repeat is interrupted by a small alpha-helical domain. The cleft between these domains forms the active site, where both citrate and acetyl-coenzyme A bind. The enzyme undergoes a conformational change upon binding of the oxaloacetate ligand, whereby the active site cleft closes over in order to form the acetyl-CoA binding site []. The energy required for domain closure comes from the interaction of the enzyme with the substrate. Type II enzymes possess an extra N-terminal beta-sheet domain, and some type II enzymes are allosterically inhibited by NADH []. This entry represents types I and II citrate synthase enzymes, as well as the related enzymes 2-methylcitrate synthase and ATP citrate synthase. 2-methylcitrate (2.3.3.5 from EC) synthase catalyses the conversion of oxaloacetate and propanoyl-CoA into (2R,3S)-2-hydroxybutane-1,2,3-tricarboxylate and coenzyme A. This enzyme is induced during bacterial growth on propionate, while type II hexameric citrate synthase is constitutive []. ATP citrate synthase (2.3.3.8 from EC) (also known as ATP citrate lyase) catalyses the MgATP-dependent, CoA-dependent cleavage of citrate into oxaloacetate and acetyl-CoA, a key step in the reductive tricarboxylic acid pathway of CO2 assimilation used by a variety of autotrophic bacteria and archaea to fix carbon dioxide []. ATP citrate synthase is composed of two distinct subunits. In eukaryotes, ATP citrate synthase is a homotetramer of a single large polypeptide, and is used to produce cytosolic acetyl-CoA from mitochondrial produced citrate [].; GO: 0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer, 0044262 cellular carbohydrate metabolic process; PDB: 2C6X_D 3L96_B 1OWB_B 1NXG_A 1K3P_A 1OWC_B 3L97_B 1NXE_A 3L98_A 3L99_A ....
Probab=100.00 E-value=2.6e-52 Score=444.92 Aligned_cols=237 Identities=28% Similarity=0.374 Sum_probs=198.0
Q ss_pred hhhhHHHHhcccCCcchhhhheeccCCCCcccCCCCCCcccccCCcHHHHHHHhh-cCCCCChhHHHHHHHHHHHhcCCC
Q 007327 336 EDLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLW-FKRSLPRYCTQFIEICIMLCADHG 414 (608)
Q Consensus 336 ~~~~~~rllA~~p~i~A~~t~I~~~~g~~i~~~g~dl~~li~~~~~~~~~l~~l~-~~~~~~~~~~~~l~~~lvl~aDHg 414 (608)
.+..+++++|++|++.+++|+ +..|+++..+..+++ +.+||++|+. +|++|++++.++||++||+++|||
T Consensus 113 ~~~~~~~liA~~p~i~a~~~~--~~~g~~~~~p~~~~~-------~~~n~l~~l~~~g~~p~~~~~~~l~~~lvl~aDH~ 183 (356)
T PF00285_consen 113 VLEDAIRLIAKIPTIVAAIYR--HRRGQPPIPPDPDLS-------YAENFLYMLGVTGREPDPEEARALDAALVLHADHG 183 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHTTS------TTSS-------HHHHHHHHHH-HSSB--HHHHHHHHHHHHHHS--S
T ss_pred HHHHHHHHhhcchHHHHHHHH--HhCCCCccccccchH-------HHHHHHHHhhccccCCChHHHHHHHHHHHhhcCCC
Confidence 348889999999999999999 779999999998887 7888887773 477789999999999999999999
Q ss_pred CCCccchhhhhhccCCCChHHHHHHhhhcc-CCCCcCccHHHHHHHHHHhccCcCHHHHHHHHHHcCCCcCCCCCCCCCC
Q 007327 415 PCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRG 493 (608)
Q Consensus 415 l~~st~~aar~~aSt~a~~~~av~agl~a~-Gp~hGGa~~~a~~~l~~~~~~~~~~~~~v~~~l~~~~~ipGFGH~vy~~ 493 (608)
+|+|| |++|+++||++|+|+|++||++++ ||+||||+++|++||+++.+. ++++++|++.++++++|||||||+|+.
T Consensus 184 ~~~St-~aaR~~aSt~~~~~~av~agl~al~G~~hgga~~~~~~~l~~i~~~-~~~~~~v~~~l~~~~~i~GfGH~vy~~ 261 (356)
T PF00285_consen 184 LNPST-FAARVAASTGADLYSAVAAGLAALSGPLHGGANEAAMRMLQEIGSP-ENVEEYVEERLAKGERIPGFGHRVYKN 261 (356)
T ss_dssp SSHHH-HHHHHHHTTT--HHHHHHHHHHHHCSTTTTTHHHHHHHHHHHHSSG-GGHHHHHHHHHHTTSTTTTBCESSSSS
T ss_pred CCccc-hhhhhhhccCcchhHHHHhhhhhccCcccccccHHHHHHHHHHHhh-HHHHHHHHHHHhccccccccCCCcCCC
Confidence 99999 999999999999999999999998 999999999999999999776 699999999999999999999999985
Q ss_pred CCCcHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHhh--ccCCcccchhhHHHHHHHHhcccCCCCChhhHHHHHhhh
Q 007327 494 DNRDKRVELLQKFARTHF---PSVKYMEYAVQVETYTLS--KANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIG 568 (608)
Q Consensus 494 ~~~DPRa~~L~~~~~~~~---~~~~~~~~a~~~e~~~~~--~~~~l~~Nvd~~~a~l~~~lG~~~~~f~~~~~~~~~p~~ 568 (608)
.|||++.|+++++++. ..++++++++++|+++.+ .+++++|||||++|+++++||+|.++||+
T Consensus 262 --~DPRa~~l~~~~~~~~~~~~~~~~~~~~~~ie~~~~~~~~~~~l~pNvd~~~a~l~~~lG~p~~~~~~---------- 329 (356)
T PF00285_consen 262 --GDPRAEALLALARELGEEFPDGPLVELAEAIEEAAPEDFKERKLYPNVDFYSAALLRALGFPPELFTA---------- 329 (356)
T ss_dssp ----HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTESB-THHHHHHHHHHTT--GGGHHH----------
T ss_pred --CCCChHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHhcchhhchH----------
Confidence 5999999999999987 889999999999999865 35689999999999999999987777666
Q ss_pred cchhhhHhhhhhhhhhhHHHhhhcCCCCCCC
Q 007327 569 YLNGLFVLARSIGLIGHTFDQKRLKQPLYRH 599 (608)
Q Consensus 569 ~~~~lf~~~R~~G~iAH~~Eq~~~~~p~~~~ 599 (608)
+|+++|++||+|||+||++...++.||
T Consensus 330 ----if~~~R~~Gw~AH~~Eq~~~~~~i~RP 356 (356)
T PF00285_consen 330 ----IFALSRTAGWIAHILEQRQLNNKIIRP 356 (356)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHCT------
T ss_pred ----HHHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence 999999999999999999856677764
No 44
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=1.2e-49 Score=398.05 Aligned_cols=285 Identities=33% Similarity=0.534 Sum_probs=266.6
Q ss_pred CCCCCCCcEEEEEcCCch----HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCc
Q 007327 4 GQLFSKTTQALFYNYKQL----PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMA 79 (608)
Q Consensus 4 ~~l~~p~s~avv~g~~~~----~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~v 79 (608)
..|++++++++|+|++++ +.+.|++| |++.|++|+ |+++| +++.|+|+|.+|+|+..++ .+
T Consensus 2 ~il~~k~tkvivqGitg~~gtfh~~~~l~y------Gt~~V~Gvt-PgkgG-------~~~~g~PVf~tV~EA~~~~-~a 66 (293)
T COG0074 2 SILLNKDTKVIVQGITGKQGTFHTEQMLAY------GTKIVGGVT-PGKGG-------QTILGLPVFNTVEEAVKET-GA 66 (293)
T ss_pred ceeecCCCeEEEeccccccchHHHHHHHHh------CCceeeccc-CCCCc-------eEEcCccHHHHHHHHHHhh-CC
Confidence 468999999999999888 99999999 467899999 98884 7999999999999999887 59
Q ss_pred cEEEEeccChhcHHHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCeEEcCCcccccccCcccccccCCccccc
Q 007327 80 DVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNI 159 (608)
Q Consensus 80 Dlavi~vp~~~~~~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~rvlGPNc~Gi~~~~~~~l~~~~~~~~~~ 159 (608)
|++||+||+.++.++++|++. +|++.+||||+|+|..|+.++++++++.|+|++||||.|++.|..+++| +
T Consensus 67 ~~svI~Vp~~~aadai~EAid-a~i~liv~ITEgIP~~D~~~~~~~a~~~g~~iiGPncpGiI~Pg~~kiG--------i 137 (293)
T COG0074 67 NASVIFVPPPFAADAILEAID-AGIKLVVIITEGIPVLDMLELKRYAREKGTRLIGPNCPGIITPGECKIG--------I 137 (293)
T ss_pred CEEEEecCcHHHHHHHHHHHh-CCCcEEEEEeCCCCHHHHHHHHHHHHhcCCEEECCCCCccCcCCcceee--------e
Confidence 999999999999999999887 8999999999999999999999999999999999999999999977886 4
Q ss_pred ccccCCCCCcEEEEecChhHHHHHHHHHHhcCCceeEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCccHHH
Q 007327 160 IHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYS 239 (608)
Q Consensus 160 ~p~~~~~~G~valvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~T~~I~ly~E~g~~~~~~ 239 (608)
+|.+.++||+|++||.||++.+++...+.+.|+|+|.+|++|++.++++++.|+|+.|.+||+|++|++..|||...+++
T Consensus 138 mp~~i~~~G~IGiVSrSGTLTyE~~~qlt~~G~GqS~~IGiGGDpi~Gt~fid~L~~fe~Dp~T~~ivmiGEiGG~aEe~ 217 (293)
T COG0074 138 MPGNIYKPGNIGIVSRSGTLTYEAVSQLTEAGLGQSTAIGIGGDPIPGTSFIDALEMFEADPETEAIVMIGEIGGPAEEE 217 (293)
T ss_pred chhhhccCCceEEEecCcchHHHHHHHHHhcCCceEEEEEeCCCCcCCccHHHHHHHHhcCccccEEEEEecCCCcHHHH
Confidence 57677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCEEEEEeCCCccCcccccccCCCCCcCCCCcchHHHHHHHHHHcCCcccCCHHHHHHHHHHHHH
Q 007327 240 LVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFE 315 (608)
Q Consensus 240 f~~~~r~a~~~KPVvvlk~Grs~~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaGvi~v~~~~el~~~~~~~~~ 315 (608)
.++++++-..+||||+|.+||+++ ..+.++|+||+.....++++.+.++|+.+|+..++++.++.++.+.++.
T Consensus 218 AA~~i~~~~~~KPVVa~iaG~tap---~gkrmGhaGaiv~~~~gta~~Ki~al~~aGv~v~etp~~l~~~l~~vl~ 290 (293)
T COG0074 218 AAEYIKANATRKPVVAYIAGRTAP---EGKRMGHAGAIVSGGKGTAESKIAALEAAGVKVAETPAELGELLLEVLK 290 (293)
T ss_pred HHHHHHHhccCCCEEEEEeccCCC---ccchhhhhhhhhcCCCccHHHHHHHHHHcCCeecCCHHHHHHHHHHHhh
Confidence 999999822459999999999996 7889999999999999999999999999999999999999998877665
No 45
>cd06099 CS_ACL-C_CCL Citrate synthase (CS), citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) from citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. Some CS proteins function as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. CCL cleaves citryl-CoA (CiCoA) to AcCoA and OAA. ACLs catalyze an ATP- and a CoA- dependant cleavage of citrate to form AcCoA and OAA; they do this in a multistep reaction, the final step of which is likely to involve the cleavage of CiCoA to generate AcCoA and OAA. The overall CS reaction is thought to proceed through three partial reactions and i
Probab=100.00 E-value=1.8e-50 Score=401.42 Aligned_cols=201 Identities=22% Similarity=0.320 Sum_probs=182.0
Q ss_pred cHHHHHHHhhcCCCCChhHHHHHHHHHHHhcCCCCCCccchhhhhhccCCCChHHHHHHhhhcc-CCCCcCccHHHHHHH
Q 007327 381 GVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYF 459 (608)
Q Consensus 381 ~~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHgl~~st~~aar~~aSt~a~~~~av~agl~a~-Gp~hGGa~~~a~~~l 459 (608)
+.+||++|+ +|+.|+++++++||++||+++|||+|+|| |++|+++||++|+|+|++|||+++ ||+||||++++++||
T Consensus 2 ~~~~fl~ml-~g~~p~~~~~~~l~~~lvl~aDHg~~~St-~aar~~aSt~ad~~~av~Agl~al~Gp~hGGa~~~a~~~l 79 (213)
T cd06099 2 YAENFLYML-GGEEPDPEFARAMDLALILHADHEGNAST-FTARVVGSTGSDPYSAIAAAIGALKGPLHGGANEAVLKML 79 (213)
T ss_pred HHHHHHHHh-cCCCCCHHHHHHHHHHHHHhcCCCCchhh-HHHHHHhccCCCHHHHHHHHHHHcCCCCcCCHHHHHHHHH
Confidence 467788777 78889999999999999999999999998 999999999999999999999998 999999999999999
Q ss_pred HHHhccC-cCHHHHHHHHHHcCCCcCCCCCCCCCCCCCcHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHhhc--cCC
Q 007327 460 KDAYDRG-LSAYEFVESMKKKGIRVPGIGHRIKRGDNRDKRVELLQKFARTHFPS---VKYMEYAVQVETYTLSK--ANN 533 (608)
Q Consensus 460 ~~~~~~~-~~~~~~v~~~l~~~~~ipGFGH~vy~~~~~DPRa~~L~~~~~~~~~~---~~~~~~a~~~e~~~~~~--~~~ 533 (608)
+++.+.. ++++++|++.++++++|||||||+|+. +|||++.|+++++++... ++++++++++|+++.+. .|+
T Consensus 80 ~e~~~~~~~~~~~~v~~~~~~~~~ipGFGH~vy~~--~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~le~~~~~~~~~r~ 157 (213)
T cd06099 80 EEIGTPKNEPAEAYIRKKLESKRVIMGFGHRVYKK--YDPRATVLKKFAEELLKEDGDDPMFELAAELEKIAEEVLYEKK 157 (213)
T ss_pred HHhCCcccccHHHHHHHHHhCCCcccCCCCCCCCC--CCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhccC
Confidence 9997652 478999999999999999999999985 599999999999988543 49999999999987553 479
Q ss_pred cccchhhHHHHHHHHhcccCCCCChhhHHHHHhhhcchhhhHhhhhhhhhhhHHHhhhcCCCCCCC
Q 007327 534 LVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRH 599 (608)
Q Consensus 534 l~~Nvd~~~a~l~~~lG~~~~~f~~~~~~~~~p~~~~~~lf~~~R~~G~iAH~~Eq~~~~~p~~~~ 599 (608)
++||||||+|+++++||||+++|++ +|+++|++||+||++||+..+.++.|+
T Consensus 158 l~~Nvd~~~a~l~~~lG~p~~~~~~--------------lf~~~R~~Gw~AH~~Eq~~~~~~l~RP 209 (213)
T cd06099 158 LYPNVDFYSGVLYKAMGFPTELFTP--------------LFAVARAVGWLAHLIEQLEDNFKIIRP 209 (213)
T ss_pred CCCChHHHHHHHHHHcCcCHHhhhH--------------HHHHHHHHHHHHHHHHHHhCCCCccCC
Confidence 9999999999999999998888887 999999999999999999776456665
No 46
>cd06100 CCL_ACL-C Citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL. CCL cleaves citryl-CoA (CiCoA) to acetyl-CoA (AcCoA) and oxaloacetate (OAA). ACL catalyzes an ATP- and a CoA- dependant cleavage of citrate to form AcCoA and OAA in a multistep reaction, the final step of which is likely to involve the cleavage of CiCoA to generate AcCoA and OAA. In fungi, yeast, plants, and animals ACL is cytosolic and generates AcCoA for lipogenesis. ACL may be required for fruiting body maturation in the filamentous fungus Sordaria macrospore. In several groups of autotrophic prokaryotes and archaea, ACL carries out the citrate-cleavage reaction of the reductive tricarboxylic acid (rTCA) cycle. In the family Aquificaceae this latter reaction in the rTCA cycle is carried out via a two enzyme system the second enzyme of which is CCL; the first enzyme is citryl-CoA synthetase (CC
Probab=100.00 E-value=3.6e-50 Score=403.68 Aligned_cols=220 Identities=44% Similarity=0.703 Sum_probs=203.2
Q ss_pred CCCCCcccccCCcHHHHHHHhhcCCCCChhHHHHHHHHHHHhcCCCC-CCccchhhhhhccCC-CChHHHHHHhhhccCC
Q 007327 369 GVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGP-CVSGAHNTIVTARAG-KDLVSSLVSGLLTIGP 446 (608)
Q Consensus 369 g~dl~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHgl-~~st~~aar~~aSt~-a~~~~av~agl~a~Gp 446 (608)
|||+.||+++. +|+++++++++|+.|++++.++|+++|++++|||+ |+|| |++|+++||+ +|+++|++||++++||
T Consensus 1 G~~~~dL~~~~-sf~e~~~lml~G~~P~~~e~~~f~~~Lvl~adhg~~~~St-~aar~~astg~~~~~~~vaag~~a~G~ 78 (227)
T cd06100 1 GYDLSDLIGKI-SFGDVLYLLLKGRLPTPYEARLLEALLVALADHGPATPSA-HAARLTASAGPEDLQSAVAAGLLGIGD 78 (227)
T ss_pred CCCHHHHHhCC-CHHHHHHHHhCCCCCCHHHHHHHHHHHHHhccCCCCCchH-HHHHHHHHcCCccHHHHHHHHHhccCC
Confidence 68888999877 99999989889999999999999999999999999 9999 9999999999 9999999999999999
Q ss_pred CCcCccHHHHHHHHHHhccC----cCHHHHHHHHHHcCCCcCCCCCCCCCCCCCcHHHHHHHHHHHHhCCCChHHHHHHH
Q 007327 447 RFGGAIDDAARYFKDAYDRG----LSAYEFVESMKKKGIRVPGIGHRIKRGDNRDKRVELLQKFARTHFPSVKYMEYAVQ 522 (608)
Q Consensus 447 ~hGGa~~~a~~~l~~~~~~~----~~~~~~v~~~l~~~~~ipGFGH~vy~~~~~DPRa~~L~~~~~~~~~~~~~~~~a~~ 522 (608)
+|||+++.+++|++++.+.. ++++++|++.++++++|||||||+|+. .|||++.|+++++++...+++++++.+
T Consensus 79 ~hgga~e~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~ipGfGH~v~~~--~DPRa~~L~~~~~~~~~~~~~~~~~~~ 156 (227)
T cd06100 79 RFGGAGEGAARLFKEAVDSGDALDAAAAEFVAEYRAAKKRIPGFGHPVHKN--PDPRVPRLLELARELGPAGPHLDYALA 156 (227)
T ss_pred cccChHHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCC--CCchHHHHHHHHHHhccCCHHHHHHHH
Confidence 99999999999999998652 489999999999999999999999984 699999999999999888899999999
Q ss_pred HHHHHhhc-cCCcccchhhHHHHHHHHhcccCCCCChhhHHHHHhhhcchhhhHhhhhhhhhhhHHHhhhcCCCCCCCCC
Q 007327 523 VETYTLSK-ANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPW 601 (608)
Q Consensus 523 ~e~~~~~~-~~~l~~Nvd~~~a~l~~~lG~~~~~f~~~~~~~~~p~~~~~~lf~~~R~~G~iAH~~Eq~~~~~p~~~~~~ 601 (608)
+++++.+. .++++|||||++|+++++||||.++|++ +|+++|++||+||++||++.+.++.+.+|
T Consensus 157 ~~~~~~~~~~~~l~~Nvd~~~a~~~~~lG~p~~~~~~--------------lf~~~R~~G~~AH~~Eq~~~~~~~~~~~~ 222 (227)
T cd06100 157 VEKALTAAKGKPLPLNVDGAIAAILLDLGFPPGALRG--------------LFVLGRSPGLIAHALEEKRLGQPLYRHPW 222 (227)
T ss_pred HHHHHHhccCCCCcccHHHHHHHHHHHhCCCHHHHHH--------------HHHHHHHHHHHHHHHHHHhccCCCCCCch
Confidence 99987542 3569999999999999999987776666 99999999999999999988778888899
Q ss_pred ccccc
Q 007327 602 EDVLY 606 (608)
Q Consensus 602 ~~~~y 606 (608)
++|+|
T Consensus 223 ~~i~y 227 (227)
T cd06100 223 DDIEY 227 (227)
T ss_pred hhccC
Confidence 99998
No 47
>KOG1255 consensus Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=4.3e-43 Score=339.98 Aligned_cols=281 Identities=31% Similarity=0.465 Sum_probs=253.9
Q ss_pred CCCCCCcEEEEEcCCch----HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCcc
Q 007327 5 QLFSKTTQALFYNYKQL----PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMAD 80 (608)
Q Consensus 5 ~l~~p~s~avv~g~~~~----~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vD 80 (608)
-+++..+++|++|++|+ +.+.+++| ||++|+|+| |+++| ++..|+|+|.||+|+.++. +.|
T Consensus 33 l~ink~TkVi~QGfTGKqgTFHs~q~~eY------gTk~VgG~~-pkK~G-------t~HLG~PVF~sV~eA~~~t-~a~ 97 (329)
T KOG1255|consen 33 LKINKDTKVICQGFTGKQGTFHSQQALEY------GTKVVGGVN-PKKGG-------TTHLGLPVFNSVAEAKKET-GAD 97 (329)
T ss_pred eeecCCceEEEecccCCccceeHHHHHHh------CCceeeccC-CCcCc-------ccccCchhhhhHHHHHHhh-CCC
Confidence 46788999999999999 88999999 689999999 98874 7999999999999998877 599
Q ss_pred EEEEeccChhcHHHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHh-CCCeEEcCCcccccccCcccccccCCccccc
Q 007327 81 VFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARS-NNKVVIGPATVGGIQAGAFKIGDTAGTIDNI 159 (608)
Q Consensus 81 lavi~vp~~~~~~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~-~g~rvlGPNc~Gi~~~~~~~l~~~~~~~~~~ 159 (608)
..||+||+..+..++.|+++ +.++.+|+||+|+|..|+.++.+.... ...|++||||.|||+|+.+++| +
T Consensus 98 AsvIyVPpp~Aa~aI~eaie-aEipLiVcITEGIPQhDMvrvk~~L~~Q~KtRLvGPNCPGII~p~qckIG--------I 168 (329)
T KOG1255|consen 98 ASVIYVPPPFAAAAIEEAIE-AEIPLIVCITEGIPQHDMVRVKHALNSQSKTRLVGPNCPGIINPGQCKIG--------I 168 (329)
T ss_pred ceEEEeCChhHHHHHHHHHh-ccCCEEEEecCCCchhhHHHHHHHHhhcccceecCCCCCCccCccceeec--------c
Confidence 99999999986655555554 899999999999999999888877654 5789999999999999998886 5
Q ss_pred ccccCCCCCcEEEEecChhHHHHHHHHHHhcCCceeEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCccHHH
Q 007327 160 IHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYS 239 (608)
Q Consensus 160 ~p~~~~~~G~valvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~T~~I~ly~E~g~~~~~~ 239 (608)
+|....++|.|++||+||++.++...+.++-|+|+|.+|.+|++.+++.+|-|+|+.|.+||+|+.|+|..|||.+.+++
T Consensus 169 mPg~Ihk~G~IGIVSRSGTLTYEaVhQTT~vglGQslcvGiGGDpFnGT~FID~L~vFl~D~~t~GIiliGEIGG~AEe~ 248 (329)
T KOG1255|consen 169 MPGHIHKRGKIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTNFIDCLEVFLEDPETEGIILIGEIGGSAEEE 248 (329)
T ss_pred cccccccCCeeEEEecCCceeehhhhhhccccccceeEEeecCCCCCCccHHHHHHHHhcCcccceEEEEeccCChhhHH
Confidence 77777799999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHhCC---CCCCEEEEEeCCCccCcccccccCCCCCcCCCCcchHHHHHHHHHHcCCcccCCHHHHHHHHHH
Q 007327 240 LVEALKQGK---VNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKE 312 (608)
Q Consensus 240 f~~~~r~a~---~~KPVvvlk~Grs~~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaGvi~v~~~~el~~~~~~ 312 (608)
.++.+++.. ..||||.+.+|.+.+ ..+.++|+|++.....++|..+.++|+.+||++++++..|-.....
T Consensus 249 AA~flk~~nSg~~~kPVvsFIAG~tAp---pGrRMGHaGAIisGgkg~A~dKi~aL~~agV~vt~sPa~lG~~~~~ 321 (329)
T KOG1255|consen 249 AAEFLKEYNSGSTAKPVVSFIAGVTAP---PGRRMGHAGAIISGGKGTAKDKIAALRDAGVVVTESPAKLGSAMLE 321 (329)
T ss_pred HHHHHHHhccCCCCCceeEEeecccCC---CcccccccceeeeCCCccHHHHHHHHHhcCeEEEcCHHHHHHHHHH
Confidence 888877742 679999999999986 6788999999998888999999999999999999999998765543
No 48
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=100.00 E-value=2.1e-41 Score=314.05 Aligned_cols=137 Identities=23% Similarity=0.376 Sum_probs=100.4
Q ss_pred CCcEEEEecChhHHHHHHHHHHhcCCceeEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCccHHHHHHHHHh
Q 007327 167 PGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQ 246 (608)
Q Consensus 167 ~G~valvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~T~~I~ly~E~g~~~~~~f~~~~r~ 246 (608)
||+||+|||||+++..+++++.++|+|||++||+||++ |+++.|+|+||.+||+||+|++|+| +++|+++|++++|+
T Consensus 1 ~G~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~--dv~~~d~l~~~~~D~~t~~I~ly~E-~~~d~~~f~~~~~~ 77 (138)
T PF13607_consen 1 PGGVALISQSGALGTAILDWAQDRGIGFSYVVSVGNEA--DVDFADLLEYLAEDPDTRVIVLYLE-GIGDGRRFLEAARR 77 (138)
T ss_dssp E-SEEEEES-HHHHHHHHHHHHHTT-EESEEEE-TT-S--SS-HHHHHHHHCT-SS--EEEEEES---S-HHHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCeeEEEEeCccc--cCCHHHHHHHHhcCCCCCEEEEEcc-CCCCHHHHHHHHHH
Confidence 69999999999999999999999999999999999999 9999999999999999999999999 99999999999999
Q ss_pred CCCCCCEEEEEeCCCccCcccccccCCCCCcCCCCcchHHHHHHHHHHcCCcccCCHHHHHHHHHH
Q 007327 247 GKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKE 312 (608)
Q Consensus 247 a~~~KPVvvlk~Grs~~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaGvi~v~~~~el~~~~~~ 312 (608)
++++||||+||+|||+.| ++++.||||+++|++ ++|+++|+|+|+++++|++||++++++
T Consensus 78 a~~~KPVv~lk~Grt~~g--~~aa~sHTgslag~~----~~~~a~~~~aGv~~v~~~~el~~~~~~ 137 (138)
T PF13607_consen 78 AARRKPVVVLKAGRTEAG--ARAAASHTGSLAGDD----AVYDAALRQAGVVRVDDLDELLDAAKA 137 (138)
T ss_dssp HCCCS-EEEEE-----------------------H----HHHHHHHHHCTEEEESSHHHHHHHHCC
T ss_pred HhcCCCEEEEeCCCchhh--hhhhhccCCcccCcH----HHHHHHHHHcCceEECCHHHHHHHHHh
Confidence 987799999999999999 999999999999999 999999999999999999999999864
No 49
>PRK06091 membrane protein FdrA; Validated
Probab=100.00 E-value=5.9e-40 Score=358.21 Aligned_cols=208 Identities=21% Similarity=0.268 Sum_probs=182.2
Q ss_pred ccccCCHHHHhhcCCCccEEEEeccChhcHHHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCeEEcCCccccc
Q 007327 63 IPVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVGGI 142 (608)
Q Consensus 63 ~~~y~sv~~i~~~~p~vDlavi~vp~~~~~~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~rvlGPNc~Gi~ 142 (608)
+|.|+++.++....|++|+|||+||+.+ +++++++|.++| +.++|+|+||+..+|++|+++||++|+||+|||| |++
T Consensus 102 ~~~~~t~~~a~~~lpe~DLAvIsVPa~~-v~~al~ea~~~G-~~viI~S~gfg~~~E~~L~e~Ar~~GlrvmGPNC-G~~ 178 (555)
T PRK06091 102 LTQVRRWDSACQKLPDANLALISVAGEY-AAELAEQALDRN-LNVMMFSDNVTLEDEIRLKTRAREKGLLVMGPDC-GTA 178 (555)
T ss_pred CcccccHHHHHhcCCCCCEEEEecCHHH-HHHHHHHHHHcC-CeEEEEcCCCCHHHHHHHHHHHHHcCCEEECCCC-hhh
Confidence 4556666665554556899999999987 677778888899 7799999999999999999999999999999999 777
Q ss_pred ccCcccccccCCcccccccccCCCCCcEEEEecChhHHHHHHHHHHhcCCceeEEeecCCCCC----CCCCHHHHHHHhh
Q 007327 143 QAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVF----PGSTLSDHILRFN 218 (608)
Q Consensus 143 ~~~~~~l~~~~~~~~~~~p~~~~~~G~valvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~----~dv~~~d~l~~l~ 218 (608)
|. . ++ +++|++. ++||+||+|||||+++.++++|+.++|+|||++||+||+.+ .|+++.|+|+||.
T Consensus 179 ~i-~-gl---~lsF~~~-----~~~G~IgiVSQSGtl~~~v~~~a~~~GiG~S~~Vs~Gn~Dls~~~ggi~~~D~L~~L~ 248 (555)
T PRK06091 179 MI-A-GT---PLAFANV-----MPEGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSAEVGGISALTALEMLS 248 (555)
T ss_pred hh-c-CC---cccccCC-----CCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEEEECCCCccccccCCCCHHHHHHHHh
Confidence 63 3 45 6777643 25999999999999999999999999999999999999942 4899999999999
Q ss_pred cCCCccEEEEEE----ecCCccHHHHHHHHHhCCCCCCEEEEEeCCCccCcccccccCCCCCcCCCCcchHHHHHHHHHH
Q 007327 219 NIPQVKMMVVLG----ELGGRDEYSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRD 294 (608)
Q Consensus 219 ~Dp~T~~I~ly~----E~g~~~~~~f~~~~r~a~~~KPVvvlk~Grs~~g~~~~aa~sHtgalag~~~~~a~~~~a~~~q 294 (608)
+||+|++|++|+ | ++++ +|++++|++ +||||++|+||++.+ + +|
T Consensus 249 ~DP~TkvIvly~kppaE-~v~~--~fl~aar~~--~KPVVvlk~Grs~~g--~-------------------------~q 296 (555)
T PRK06091 249 ADEKSEVIAFVSKPPAE-AVRL--KIINAMKAT--GKPVVALFLGYTPAV--A-------------------------RD 296 (555)
T ss_pred hCCCCcEEEEEEecCch-HHHH--HHHHHHhhC--CCCEEEEEecCCchh--h-------------------------hc
Confidence 999999999999 7 7774 999999985 899999999999986 1 89
Q ss_pred cCCcccCCHHHHHHHHHHHHH
Q 007327 295 AGAVVPTSYEAFESAIKETFE 315 (608)
Q Consensus 295 aGvi~v~~~~el~~~~~~~~~ 315 (608)
+|++++++++|+++++.+|..
T Consensus 297 ~GVi~a~tleEl~~~A~~la~ 317 (555)
T PRK06091 297 ENVWFASTLDEAARLACLLSR 317 (555)
T ss_pred CCeEEeCCHHHHHHHHHHHhc
Confidence 999999999999999988774
No 50
>KOG2617 consensus Citrate synthase [Energy production and conversion]
Probab=100.00 E-value=2.1e-37 Score=319.51 Aligned_cols=240 Identities=20% Similarity=0.209 Sum_probs=213.6
Q ss_pred CCCchhhhHHHHhcccCCcchhhhheeccCCCCcccCCCCCCcccccCCcHHHHHHHhhcCCCCChhHHHHHHHHHHHhc
Q 007327 332 PQIPEDLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCA 411 (608)
Q Consensus 332 p~~~~~~~~~rllA~~p~i~A~~t~I~~~~g~~i~~~g~dl~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~lvl~a 411 (608)
=+-.+++++++|+|+.|++++.+|+ ...++....+.++++ +..||.+|+-+ .+++..+++|.++++|+
T Consensus 186 yw~~~~ed~l~Liak~p~iAa~iY~--~~~~dg~~~~~~~~d-------ys~Nf~~mlg~---~~~~f~~lmrly~~iHa 253 (458)
T KOG2617|consen 186 YWQYTYEDCLVLIAKLPTIAAAIYR--NIYADGIPKPDPNLD-------YSANFARMLGS---RQPDFAQLMRLYVGIHA 253 (458)
T ss_pred cccccHHHHHHHHHhccHHHHHHHH--HHhcCCCCCCCcccc-------hhHhHHHHHcc---CChHHHHHHHHeeeeec
Confidence 3667789999999999999999999 455555666677777 88999999843 34789999999999999
Q ss_pred CCCCCCccchhhhhhccCCCChHHHHHHhhhcc-CCCCcCccHHHHHHHH----HHhcc--CcCHHHHHHHHHHcCCCcC
Q 007327 412 DHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFK----DAYDR--GLSAYEFVESMKKKGIRVP 484 (608)
Q Consensus 412 DHgl~~st~~aar~~aSt~a~~~~av~agl~a~-Gp~hGGa~~~a~~~l~----~~~~~--~~~~~~~v~~~l~~~~~ip 484 (608)
|||.+++++++.++++|+. |||.+++||++++ ||+||+|+|++++||. ||++. .+++++|++..+++++.||
T Consensus 254 dHE~gnVsAh~~HLvGSal-dpyls~aa~~~GLaGPLHGlAnqEvl~~L~~~~~Eig~~~s~e~ikeyiw~~ln~~rvvp 332 (458)
T KOG2617|consen 254 DHEGGNVSAHTGHLVGSAL-DPYLSFAAGMNGLAGPLHGLANQEVLRFLGKLIEEIGKDLSKENIKEYIWKTLNSGRVVP 332 (458)
T ss_pred ccccCcHHHHhcccccccc-chhHHHHHhhcccccccccCchHHHHHHHHHhHHHhccccchhhhhHhhHHhhccccccc
Confidence 9999888889999999999 9999999999998 9999999999999998 66521 3688999999999999999
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh----h--ccCCcccchhhHHHHHHHHhcccCCCC-C
Q 007327 485 GIGHRIKRGDNRDKRVELLQKFARTHFPSVKYMEYAVQVETYTL----S--KANNLVLNVDGAIGSLFLDLLAGSGMF-S 557 (608)
Q Consensus 485 GFGH~vy~~~~~DPRa~~L~~~~~~~~~~~~~~~~a~~~e~~~~----~--~~~~l~~Nvd~~~a~l~~~lG~~~~~f-~ 557 (608)
||||++++. .|||...+++++.++.++++.+++...+++++. + +.++.+||||++++.++..+|++...| |
T Consensus 333 GyGHavlr~--tDPR~~~~~efA~k~~~~d~l~~l~~~l~~~~p~vl~e~gk~knp~PNVD~~SGvll~~yGl~e~~fyT 410 (458)
T KOG2617|consen 333 GYGHAVLRK--TDPRYKVQREFALKHLPDDPLFLLVSALYKIAPGVLTEHGKVKNPYPNVDAHSGVLLQYYGLPELFFYT 410 (458)
T ss_pred ccccccccC--CCchhhHHHHHHHhcCCCCcchhhhHHHHHhChHHHHHhcccCCCCCcHHHHHHHHHHhcCCcHHHHHH
Confidence 999999984 799999999999999999999999999998752 1 579999999999999999999986655 7
Q ss_pred hhhHHHHHhhhcchhhhHhhhhhhhhhhHHHhhhcCCCCCCCC
Q 007327 558 KQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHP 600 (608)
Q Consensus 558 ~~~~~~~~p~~~~~~lf~~~R~~G~iAH~~Eq~~~~~p~~~~~ 600 (608)
+ +|.++|++|.++|.+|.+.+..||.|+.
T Consensus 411 V--------------LFgVsRa~Gvlsqliw~ralg~pieRPk 439 (458)
T KOG2617|consen 411 V--------------LFGVSRALGVLSQLIWDRALGLPIERPK 439 (458)
T ss_pred H--------------HHHHhhhHHHHHHHHHHHHhCCcccCcc
Confidence 7 9999999999999999999999999984
No 51
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=99.80 E-value=6.5e-20 Score=165.81 Aligned_cols=110 Identities=15% Similarity=0.174 Sum_probs=83.3
Q ss_pred CcEEEEEcC------CchHHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEE
Q 007327 10 TTQALFYNY------KQLPIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFI 83 (608)
Q Consensus 10 ~s~avv~g~------~~~~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlav 83 (608)
+|+||||.. +.+++++|.+.||. |++|| |+.+ +++|++||+|++|+ ++ ++|+++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~-------v~~Vn-p~~~---------~i~G~~~y~sl~e~-p~--~iDlav 60 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYE-------VYPVN-PKGG---------EILGIKCYPSLAEI-PE--PIDLAV 60 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-E-------EEEES-TTCS---------EETTEE-BSSGGGC-SS--T-SEEE
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCE-------EEEEC-CCce---------EECcEEeeccccCC-CC--CCCEEE
Confidence 589999531 22299999998764 89999 8554 99999999999995 43 589999
Q ss_pred EeccChhcHHHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCeEEcCCccccccc
Q 007327 84 NFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVGGIQA 144 (608)
Q Consensus 84 i~vp~~~~~~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~rvlGPNc~Gi~~~ 144 (608)
+++|++. +++++++|.++|++.++++++ ..++++.++|+++|++++||||+|+++|
T Consensus 61 v~~~~~~-~~~~v~~~~~~g~~~v~~~~g----~~~~~~~~~a~~~gi~vigp~C~gv~~~ 116 (116)
T PF13380_consen 61 VCVPPDK-VPEIVDEAAALGVKAVWLQPG----AESEELIEAAREAGIRVIGPNCLGVVNP 116 (116)
T ss_dssp E-S-HHH-HHHHHHHHHHHT-SEEEE-TT----S--HHHHHHHHHTT-EEEESS-HHHHHT
T ss_pred EEcCHHH-HHHHHHHHHHcCCCEEEEEcc----hHHHHHHHHHHHcCCEEEeCCcceEEcC
Confidence 9999986 889999999999999999887 4678999999999999999999999875
No 52
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=98.82 E-value=6.8e-09 Score=94.89 Aligned_cols=111 Identities=17% Similarity=0.108 Sum_probs=85.7
Q ss_pred CCCCCcEEEEEcCCch-------HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCC
Q 007327 6 LFSKTTQALFYNYKQL-------PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPM 78 (608)
Q Consensus 6 l~~p~s~avv~g~~~~-------~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~ 78 (608)
|-+=++|||| |+|.+ +.+.|++.||. |.+|| |+.. |+|++|.+||+|++|+|. +
T Consensus 13 L~~~K~IAvV-G~S~~P~r~sy~V~kyL~~~GY~-------ViPVN-P~~~-------~~eiLG~k~y~sL~dIpe---~ 73 (140)
T COG1832 13 LKSAKTIAVV-GASDKPDRPSYRVAKYLQQKGYR-------VIPVN-PKLA-------GEEILGEKVYPSLADIPE---P 73 (140)
T ss_pred HHhCceEEEE-ecCCCCCccHHHHHHHHHHCCCE-------EEeeC-cccc-------hHHhcCchhhhcHHhCCC---C
Confidence 5566899999 65554 99999999996 78999 8655 369999999999999864 5
Q ss_pred ccEEEEeccChhcHHHHHHHhcCCCCCEEEEecCCC-CHHHHHHHHHHHHhCCCeEEcCCcccc
Q 007327 79 ADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGV-PEADTKQLIAYARSNNKVVIGPATVGG 141 (608)
Q Consensus 79 vDlavi~vp~~~~~~~~le~~~~~gv~~~viis~Gf-~e~~~~~l~~~a~~~g~rvlGPNc~Gi 141 (608)
||++-|+.++.. ++.+.+++.++|+|.+=. .-|. .| +..+.+++.|+.++==-|+.+
T Consensus 74 IDiVdvFR~~e~-~~~i~~eal~~~~kv~W~-QlGi~n~----ea~~~~~~aG~~vV~nrCi~~ 131 (140)
T COG1832 74 IDIVDVFRRSEA-APEVAREALEKGAKVVWL-QLGIRNE----EAAEKARDAGLDVVMDRCIMI 131 (140)
T ss_pred CcEEEEecChhh-hHHHHHHHHhhCCCeEEE-ecCcCCH----HHHHHHHHhCcHHHHHhhHHH
Confidence 999999999986 788888888899775443 4443 33 356677888887766666543
No 53
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=98.79 E-value=2e-08 Score=94.97 Aligned_cols=121 Identities=31% Similarity=0.347 Sum_probs=96.4
Q ss_pred EecChhHHHHHHHHHHhc--------------CCceeEEeecCCCCCC---------CCCHHHHHHHhhcCCCccEEEEE
Q 007327 173 VSKSGGMSNELYNTIARV--------------TDGIYEGIAIGGDVFP---------GSTLSDHILRFNNIPQVKMMVVL 229 (608)
Q Consensus 173 vSQSG~l~~~~~~~~~~~--------------g~G~s~~vs~Gn~~~~---------dv~~~d~l~~l~~Dp~T~~I~ly 229 (608)
++.||+|+++.++.+.+. |.+.+.++.+|.+.++ .....|.|+-+.+||+|++|++-
T Consensus 1 l~~GgtL~~Ea~~~i~~~~~~~~sn~~~~~~~g~~~~~~lDlGgd~~t~GrphPmid~~~~~~~l~~~~~Dp~v~vIlvd 80 (153)
T PF00549_consen 1 LYNGGTLAMEAMDLISDALGDVYSNFKLANPLGGGPANFLDLGGDAFTQGRPHPMIDPSTRNEALEIEAADPEVKVILVD 80 (153)
T ss_dssp EESSHHHHHHHHHHHHHTTT------GCCEEETCTEEEEEECTSSSSHTTS--TTT-SSHHHHHHHHHHTSTTESEEEEE
T ss_pred CcCcHHHHHHHHHHHHHhhccccccccccccCCCCceeEEEeCCCcccccCcCCCcCHHHHHHHHHHHhcCCCccEEEEE
Confidence 578999999999999999 9999999999999976 67899999999999999999999
Q ss_pred EecCCccH----HHHHHHHHhCC---CCCCEEEEEeCCCccCcccccccCCCCCcCCCCcchHHHHHHHHHHcCCcccCC
Q 007327 230 GELGGRDE----YSLVEALKQGK---VNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTS 302 (608)
Q Consensus 230 ~E~g~~~~----~~f~~~~r~a~---~~KPVvvlk~Grs~~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaGvi~v~~ 302 (608)
+|+|+..- ..++++.++.. ++||||++..|+.+.- +..+.| ..+++++|+..+.+
T Consensus 81 ~~~G~g~~~~~A~~l~~a~~~~~~~~~~~pvVa~v~GT~~dp---q~~~~~---------------~~~L~~~G~~v~~s 142 (153)
T PF00549_consen 81 IVGGIGSCEDPAAGLIPAIKEAKAEGRKKPVVARVCGTNADP---QGRMGQ---------------AGALEDAGVIVAES 142 (153)
T ss_dssp EESSSSSHHHHHHHHHHHHSHCTHTTT-SEEEEEEESTTCHT---TSCHHH---------------HHHHHCTTCSCHHH
T ss_pred eccccCchHHHHHHHHHHHHhccccCCCCcEEEEeeeecCCC---CCcHHH---------------HHHHHhCCCccccc
Confidence 99885543 35666677665 7899999999999872 222233 25677777777776
Q ss_pred HHHHHHHHH
Q 007327 303 YEAFESAIK 311 (608)
Q Consensus 303 ~~el~~~~~ 311 (608)
-++....+.
T Consensus 143 ~~~A~~~A~ 151 (153)
T PF00549_consen 143 NAQAARAAG 151 (153)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHcC
Confidence 666555543
No 54
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=98.63 E-value=1.4e-07 Score=82.46 Aligned_cols=89 Identities=18% Similarity=0.138 Sum_probs=61.9
Q ss_pred CcEEEEEcCCch---HHH-HHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEe
Q 007327 10 TTQALFYNYKQL---PIQ-RMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINF 85 (608)
Q Consensus 10 ~s~avv~g~~~~---~~~-~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi~ 85 (608)
.+++|+ |+++. .+. .....+| +...+..++ |.+. |+++.|+|+|.+++++.+.. ++|.+|++
T Consensus 4 ~~v~iv-Gag~~G~a~~~~~~~~~g~----~i~~~~dv~-~~~~-------G~~i~gipV~~~~~~l~~~~-~i~iaii~ 69 (96)
T PF02629_consen 4 TNVIIV-GAGNLGRALLYNGFSMRGF----GIVAVFDVD-PEKI-------GKEIGGIPVYGSMDELEEFI-EIDIAIIT 69 (96)
T ss_dssp EEEEEE-TTTSHHHHHHHHHHHHHCE----CEEEEEEEC-TTTT-------TSEETTEEEESSHHHHHHHC-TTSEEEEE
T ss_pred CeEEEE-CCCCcHHHHHHhHHHHcCC----CCEEEEEcC-CCcc-------CcEECCEEeeccHHHhhhhh-CCCEEEEE
Confidence 344545 77765 222 2223444 344566787 7665 37999999999999988766 59999999
Q ss_pred ccChhcHHHHHHHhcCCCCCEEEEecCC
Q 007327 86 SSFRSAAASSMAALKQPTIRVVAIIAEG 113 (608)
Q Consensus 86 vp~~~~~~~~le~~~~~gv~~~viis~G 113 (608)
||+.. +.++.+++.++|||.++.+|.|
T Consensus 70 VP~~~-a~~~~~~~~~~gIk~i~nft~~ 96 (96)
T PF02629_consen 70 VPAEA-AQEVADELVEAGIKGIVNFTPG 96 (96)
T ss_dssp S-HHH-HHHHHHHHHHTT-SEEEEESSS
T ss_pred cCHHH-HHHHHHHHHHcCCCEEEEeCCC
Confidence 99987 4555555556999999999975
No 55
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=98.03 E-value=1.2e-05 Score=73.54 Aligned_cols=113 Identities=16% Similarity=0.182 Sum_probs=76.9
Q ss_pred cEEEEEcCCch----HHHHHhhCcccCCCCCCcEEEEeCCCC----CCccccccCceeecccccCCHHHHhhcCCCccEE
Q 007327 11 TQALFYNYKQL----PIQRMLDFDFLCGRETPSVAGIINPGA----EGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVF 82 (608)
Q Consensus 11 s~avv~g~~~~----~~~~l~~~~~~~~~g~~~v~~v~~p~~----~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDla 82 (608)
.|+|+ |++|| +.+.+.+.. +.++++++. ++. +.+..++.|..-.|++.|.+++++... +|++
T Consensus 2 rV~i~-G~~GrMG~~i~~~i~~~~-----~~~lv~~v~-~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~---~DVv 71 (124)
T PF01113_consen 2 RVGIV-GASGRMGRAIAEAILESP-----GFELVGAVD-RKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEE---ADVV 71 (124)
T ss_dssp EEEEE-TTTSHHHHHHHHHHHHST-----TEEEEEEEE-TTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH----SEE
T ss_pred EEEEE-CCCCHHHHHHHHHHHhcC-----CcEEEEEEe-cCCcccccchhhhhhCcCCcccccchhHHHhccc---CCEE
Confidence 45555 88777 666777643 556888888 433 224444555567899999999998763 7999
Q ss_pred EEeccChhcHHHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCe-EEcCC
Q 007327 83 INFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKV-VIGPA 137 (608)
Q Consensus 83 vi~vp~~~~~~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~r-vlGPN 137 (608)
|.+.-++ .+...++.|.++|++ +|+-|+||.+...++|.+++++ +. ++-||
T Consensus 72 IDfT~p~-~~~~~~~~~~~~g~~-~ViGTTG~~~~~~~~l~~~a~~--~~vl~a~N 123 (124)
T PF01113_consen 72 IDFTNPD-AVYDNLEYALKHGVP-LVIGTTGFSDEQIDELEELAKK--IPVLIAPN 123 (124)
T ss_dssp EEES-HH-HHHHHHHHHHHHT-E-EEEE-SSSHHHHHHHHHHHTTT--SEEEE-SS
T ss_pred EEcCChH-HhHHHHHHHHhCCCC-EEEECCCCCHHHHHHHHHHhcc--CCEEEeCC
Confidence 9988665 477888888888876 5556999998888889888876 44 66666
No 56
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=97.78 E-value=0.00012 Score=75.69 Aligned_cols=122 Identities=21% Similarity=0.266 Sum_probs=82.5
Q ss_pred cEEEEE--cCCch-HHHHHhhCcccCCCCCCcEEEEeCCC--CCC-ccccccCceeecccccCCHHHHhhcCCCccEEEE
Q 007327 11 TQALFY--NYKQL-PIQRMLDFDFLCGRETPSVAGIINPG--AEG-FQKLFFGQEEIAIPVHSTVEAACAAHPMADVFIN 84 (608)
Q Consensus 11 s~avv~--g~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p~--~~~-~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi 84 (608)
.++|+| |..|+ +++.+.+.. +.++++.+..+. +.+ +...+.|..-.|++.|.+++++ .. ++|++|.
T Consensus 3 kV~IiGa~G~MG~~i~~~i~~~~-----~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l-~~--~~DvVId 74 (266)
T TIGR00036 3 KVAVAGAAGRMGRELIKAALAAE-----GLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAV-ET--DPDVLID 74 (266)
T ss_pred EEEEECCCCHHHHHHHHHHHhCC-----CCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHh-cC--CCCEEEE
Confidence 577774 33333 777776543 556888777321 111 1111222122478999999987 32 4899999
Q ss_pred eccChhcHHHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCe-EEcCCc-cccc
Q 007327 85 FSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKV-VIGPAT-VGGI 142 (608)
Q Consensus 85 ~vp~~~~~~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~r-vlGPNc-~Gi~ 142 (608)
+.|+.. ..+.++.|.++|++ +|+-|.||.+.+.++|.+.|+++|+. +++||. +|+.
T Consensus 75 fT~p~~-~~~~~~~al~~g~~-vVigttg~~~e~~~~l~~aA~~~g~~v~~a~NfSlGv~ 132 (266)
T TIGR00036 75 FTTPEG-VLNHLKFALEHGVR-LVVGTTGFSEEDKQELADLAEKAGIAAVIAPNFSIGVN 132 (266)
T ss_pred CCChHH-HHHHHHHHHHCCCC-EEEECCCCCHHHHHHHHHHHhcCCccEEEECcccHHHH
Confidence 999975 66777777778866 55556799999999999999999986 778884 4543
No 57
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=97.70 E-value=0.0003 Score=71.80 Aligned_cols=121 Identities=21% Similarity=0.197 Sum_probs=87.3
Q ss_pred CCcEEEEEcCCch----HHHHHhhCcccCCCCCCcEEEEeCCCCC---CccccccCceeecccccCCHHHHhhcCCCccE
Q 007327 9 KTTQALFYNYKQL----PIQRMLDFDFLCGRETPSVAGIINPGAE---GFQKLFFGQEEIAIPVHSTVEAACAAHPMADV 81 (608)
Q Consensus 9 p~s~avv~g~~~~----~~~~l~~~~~~~~~g~~~v~~v~~p~~~---~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDl 81 (608)
++.++|+ |++|| ++|.+.+.. +..+++++..++.. .+.+++.|.+-.|+|+.+++..... ++|+
T Consensus 2 ~iki~V~-Ga~GRMG~~ii~~v~~~~-----~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~---~~DV 72 (266)
T COG0289 2 MIKVAVA-GASGRMGRTLIRAVLEAP-----DLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKA---DADV 72 (266)
T ss_pred CceEEEE-cCCChHHHHHHHHHhcCC-----CceEEEEEecCCccccccchhhhccccccCceeecchhhccc---CCCE
Confidence 3456666 77777 777776654 55688888755332 1344555667889999998665432 5899
Q ss_pred EEEeccChhcHHHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCe-EEcCCc-cccc
Q 007327 82 FINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKV-VIGPAT-VGGI 142 (608)
Q Consensus 82 avi~vp~~~~~~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~r-vlGPNc-~Gi~ 142 (608)
+|-+..|.. ....++.|.+.|++ .||=|.||.+...++|.+++++ +. |+-||. +|+.
T Consensus 73 ~IDFT~P~~-~~~~l~~~~~~~~~-lVIGTTGf~~e~~~~l~~~a~~--v~vv~a~NfSiGvn 131 (266)
T COG0289 73 LIDFTTPEA-TLENLEFALEHGKP-LVIGTTGFTEEQLEKLREAAEK--VPVVIAPNFSLGVN 131 (266)
T ss_pred EEECCCchh-hHHHHHHHHHcCCC-eEEECCCCCHHHHHHHHHHHhh--CCEEEeccchHHHH
Confidence 999998875 67788999988865 5666999999999999999988 53 677774 4543
No 58
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=97.59 E-value=0.011 Score=65.67 Aligned_cols=200 Identities=15% Similarity=0.135 Sum_probs=118.7
Q ss_pred CCccEEEEeccChhcH---HHHHHHhcCCCCCEEEEecCCCCHH--------------HHHHHHHHHHhCCCeEEcCCcc
Q 007327 77 PMADVFINFSSFRSAA---ASSMAALKQPTIRVVAIIAEGVPEA--------------DTKQLIAYARSNNKVVIGPATV 139 (608)
Q Consensus 77 p~vDlavi~vp~~~~~---~~~le~~~~~gv~~~viis~Gf~e~--------------~~~~l~~~a~~~g~rvlGPNc~ 139 (608)
|+...+++++-.-... -.+.+.+. ++ |-+|++-+|=.+. ..+-..+..|++|+..+ -+.-
T Consensus 202 ~~t~~I~ly~E~~~~~~~f~~aa~~a~-~~-KPVv~~k~Grs~~g~~aa~sHtgalag~~~~~~a~~~~~Gv~~~-~~~~ 278 (447)
T TIGR02717 202 PDTKVILLYLEGIKDGRKFLKTAREIS-KK-KPIVVLKSGTSEAGAKAASSHTGALAGSDEAYDAAFKQAGVIRA-DSIE 278 (447)
T ss_pred CCCCEEEEEecCCCCHHHHHHHHHHHc-CC-CCEEEEecCCChhhhhhhhhccccccChHHHHHHHHHHCCeEEe-CCHH
Confidence 4578888877642222 23334443 34 5566666665543 12223445577776433 1111
Q ss_pred cccccCcccccccCCcccccccccCCCCCcEEEEecChhHHHHHHHHHHhcCCcee---------------EEeecCCCC
Q 007327 140 GGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIY---------------EGIAIGGDV 204 (608)
Q Consensus 140 Gi~~~~~~~l~~~~~~~~~~~p~~~~~~G~valvSQSG~l~~~~~~~~~~~g~G~s---------------~~vs~Gn~~ 204 (608)
-+++... .|.. .| ..+-.+|++||-||+.+..+.|.+.+.|+-+- ...+.+|-.
T Consensus 279 el~~~~~--------~l~~-~~--~~~g~rvaivs~sGG~g~l~aD~~~~~Gl~lp~ls~~t~~~L~~~lp~~~~~~NPl 347 (447)
T TIGR02717 279 ELFDLAR--------LLSN-QP--LPKGNRVAIITNAGGPGVIATDACEENGLELAELSEATKNKLRNILPPEASIKNPV 347 (447)
T ss_pred HHHHHHH--------HHhc-CC--CCCCCeEEEEECCchHHHHHHHHHHHcCCCcCCCCHHHHHHHHHhCccccccCCCE
Confidence 1111111 1111 11 23456799999999999999999999998765 235666655
Q ss_pred CCCC-------CHHHHHHHhhcCCCccEEEEEEec-CCccHHHHHHHHHhC---CCCCCEEEEEeCCCccCcccccccCC
Q 007327 205 FPGS-------TLSDHILRFNNIPQVKMMVVLGEL-GGRDEYSLVEALKQG---KVNKPVVAWVSGTCARLFKSEVQFGH 273 (608)
Q Consensus 205 ~~dv-------~~~d~l~~l~~Dp~T~~I~ly~E~-g~~~~~~f~~~~r~a---~~~KPVvvlk~Grs~~g~~~~aa~sH 273 (608)
|+ .+.+.++.+.+||++.+|++.+-+ +..+.....+.+.++ ..+|||++.-.|...
T Consensus 348 --Dl~~~~~~~~~~~al~~l~~dp~vd~Vlv~~~~~~~~~~~~~a~~l~~~~~~~~~KPvv~~~~gg~~----------- 414 (447)
T TIGR02717 348 --DVLGDATPERYAKALKTVAEDENVDGVVVVLTPTAMTDPEEVAKGIIEGAKKSNEKPVVAGFMGGKS----------- 414 (447)
T ss_pred --ecCCCCCHHHHHHHHHHHHcCCCCCEEEEEccCCccCCHHHHHHHHHHHHHhcCCCcEEEEecCCcc-----------
Confidence 44 467899999999999999865431 222333344443332 138999776433111
Q ss_pred CCCcCCCCcchHHHHHHHHHHcCCcccCCHHHHHHHHHHHH
Q 007327 274 AGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETF 314 (608)
Q Consensus 274 tgalag~~~~~a~~~~a~~~qaGvi~v~~~~el~~~~~~~~ 314 (608)
. +.....|+++|+...+++++-..+...+.
T Consensus 415 -------~----~~~~~~L~~~Gip~f~~p~~A~~al~~~~ 444 (447)
T TIGR02717 415 -------V----DPAKRILEENGIPNYTFPERAVKALSALY 444 (447)
T ss_pred -------H----HHHHHHHHhCCCCccCCHHHHHHHHHHHH
Confidence 1 44557789999999999999777665544
No 59
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=97.48 E-value=0.00079 Score=69.34 Aligned_cols=116 Identities=19% Similarity=0.165 Sum_probs=77.1
Q ss_pred CCcEEEEEcCCch----HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEE
Q 007327 9 KTTQALFYNYKQL----PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFIN 84 (608)
Q Consensus 9 p~s~avv~g~~~~----~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi 84 (608)
|+.++|+ |.+|+ +++.+.+.. +.++++.++ +.... .... +-.|++.|.+++++.. ++|++|.
T Consensus 1 ~mkV~Ii-G~~G~mG~~i~~~l~~~~-----~~elvav~d-~~~~~-~~~~---~~~~i~~~~dl~~ll~---~~DvVid 66 (257)
T PRK00048 1 MIKVAVA-GASGRMGRELIEAVEAAE-----DLELVAAVD-RPGSP-LVGQ---GALGVAITDDLEAVLA---DADVLID 66 (257)
T ss_pred CcEEEEE-CCCCHHHHHHHHHHHhCC-----CCEEEEEEe-cCCcc-cccc---CCCCccccCCHHHhcc---CCCEEEE
Confidence 4678888 54333 666666542 445777676 32211 0111 3357889999999765 4899998
Q ss_pred eccChhcHHHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCeEEcCCc-ccc
Q 007327 85 FSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPAT-VGG 141 (608)
Q Consensus 85 ~vp~~~~~~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~rvlGPNc-~Gi 141 (608)
+.|+.. ..+.++.|.++|++.++- |.||.+.+.++|.+.+++.+ .++-||. +|+
T Consensus 67 ~t~p~~-~~~~~~~al~~G~~vvig-ttG~s~~~~~~l~~aa~~~~-v~~s~n~s~g~ 121 (257)
T PRK00048 67 FTTPEA-TLENLEFALEHGKPLVIG-TTGFTEEQLAELEEAAKKIP-VVIAPNFSIGV 121 (257)
T ss_pred CCCHHH-HHHHHHHHHHcCCCEEEE-CCCCCHHHHHHHHHHhcCCC-EEEECcchHHH
Confidence 998876 567778788899886655 89999998899998553323 4666765 344
No 60
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=97.33 E-value=0.0019 Score=70.46 Aligned_cols=122 Identities=19% Similarity=0.214 Sum_probs=92.0
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhcCCceeEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCccHHHHHHHH-
Q 007327 166 RPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEAL- 244 (608)
Q Consensus 166 ~~G~valvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~T~~I~ly~E~g~~~~~~f~~~~- 244 (608)
..|+|++++.+|+++...+|.+...|.....++.+|..+ ..-.+.+.++-+.+||++++|++++-.++.+...+++.+
T Consensus 255 l~G~i~~i~nG~Gl~~~t~D~~~~~g~~~aNplDlgg~a-~~~~~~~al~~l~~dp~vd~ilv~i~gg~~~~~~va~~i~ 333 (386)
T TIGR01016 255 LDGNIGCMVNGAGLAMATMDIIKLYGGEPANFLDVGGGA-SAERVREALKLVLSDKSVKVVFINIFGGITRCDLVAKGLV 333 (386)
T ss_pred cCCcEEEEECCccHHHHHHHHHHHcCCCCCCcEEecCCC-CHHHHHHHHHHHHcCCCCCEEEEECCCCCCCHHHHHHHHH
Confidence 589999999999999999999999999888899887764 245678899999999999999987653444444555543
Q ss_pred ---HhCCCCCCEEEEEeCCCccCcccccccCCCCCcCCCCcchHHHHHHHHHHcC--CcccCCHHHHHHHHH
Q 007327 245 ---KQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAG--AVVPTSYEAFESAIK 311 (608)
Q Consensus 245 ---r~a~~~KPVvvlk~Grs~~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaG--vi~v~~~~el~~~~~ 311 (608)
++...+|||++.-.|... +.....++++| +...+++++-...+-
T Consensus 334 ~a~~~~~~~kPvvv~~~g~~~-----------------------~~~~~~L~~~G~~ip~~~~~~~Av~~~~ 382 (386)
T TIGR01016 334 EALKEVGVNVPVVVRLEGTNV-----------------------EEGKKILAESGLNIIFATSMEEAAEKAV 382 (386)
T ss_pred HHHHhcCCCCcEEEEeCCccH-----------------------HHHHHHHHHcCCCccccCCHHHHHHHHH
Confidence 332234999776544211 34457789999 999999988655543
No 61
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=97.32 E-value=0.0021 Score=70.15 Aligned_cols=123 Identities=15% Similarity=0.217 Sum_probs=90.2
Q ss_pred CCcEEEEecChhHHHHHHHHHHhcCCceeEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCccHHHHHHHHHh
Q 007327 167 PGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQ 246 (608)
Q Consensus 167 ~G~valvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~T~~I~ly~E~g~~~~~~f~~~~r~ 246 (608)
.|+|++|+.+|+++...+|.+.+.|+.....+.+|..+ ..-.+.+.++.+.+||++++|++.+=.+......+++.+.+
T Consensus 256 ~~~i~ii~ng~G~~~~~~D~l~~~g~~~~NPvDl~g~~-~~e~~~~aL~~l~~d~~vd~vlv~~~~~~~~~~~va~~i~~ 334 (388)
T PRK00696 256 DGNIGCMVNGAGLAMATMDIIKLYGGEPANFLDVGGGA-TAERVAEAFKIILSDPNVKAILVNIFGGITRCDVIAEGIIA 334 (388)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcCCCcCCeEEecCCC-CHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 69999999999999999999999999777788776653 24567889999999999999987644234444445554433
Q ss_pred C----CCCCCEEEEEeCCCccCcccccccCCCCCcCCCCcchHHHHHHHHHHcC--CcccCCHHHHHHHHHHH
Q 007327 247 G----KVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAG--AVVPTSYEAFESAIKET 313 (608)
Q Consensus 247 a----~~~KPVvvlk~Grs~~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaG--vi~v~~~~el~~~~~~~ 313 (608)
+ ..+|||++.-.| .. . +.....|+++| +...+++++-..++..+
T Consensus 335 ~~~~~~~~kPvv~~~~g-~~------------------~----~~~~~~L~~~Gi~ip~f~~pe~A~~al~~~ 384 (388)
T PRK00696 335 AVKEVGVTVPLVVRLEG-TN------------------V----ELGKKILAESGLNIIAADTLDDAAQKAVEA 384 (388)
T ss_pred HHHhcCCCCcEEEEeCC-CC------------------H----HHHHHHHHHCCCCceecCCHHHHHHHHHHH
Confidence 2 247999766544 11 1 44557789999 88999999966655533
No 62
>PLN02775 Probable dihydrodipicolinate reductase
Probab=97.18 E-value=0.0043 Score=64.56 Aligned_cols=120 Identities=10% Similarity=0.096 Sum_probs=81.1
Q ss_pred CCCcEEEEEcCCch----HHHHHhhCcccCCCCCCcEEEEeCCCCCC-ccc-cccCceeeccccc--CCHHHHhhcC--C
Q 007327 8 SKTTQALFYNYKQL----PIQRMLDFDFLCGRETPSVAGIINPGAEG-FQK-LFFGQEEIAIPVH--STVEAACAAH--P 77 (608)
Q Consensus 8 ~p~s~avv~g~~~~----~~~~l~~~~~~~~~g~~~v~~v~~p~~~~-~~~-~~~g~ev~G~~~y--~sv~~i~~~~--p 77 (608)
.+...++|.|+.|| +++.+.+. +.++|+.+. ++..+ +.. ++.|. +++.| .++++++... -
T Consensus 9 ~~~i~V~V~Ga~G~MG~~~~~av~~~------~~~Lv~~~~-~~~~~~~~~~~~~g~---~v~~~~~~dl~~~l~~~~~~ 78 (286)
T PLN02775 9 GSAIPIMVNGCTGKMGHAVAEAAVSA------GLQLVPVSF-TGPAGVGVTVEVCGV---EVRLVGPSEREAVLSSVKAE 78 (286)
T ss_pred CCCCeEEEECCCChHHHHHHHHHhcC------CCEEEEEec-cccccccccceeccc---eeeeecCccHHHHHHHhhcc
Confidence 34446777798888 77777774 456887776 64443 222 23231 78999 9999988432 0
Q ss_pred Ccc-EEEEeccChhcHHHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCe-EEcCCc-cccc
Q 007327 78 MAD-VFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKV-VIGPAT-VGGI 142 (608)
Q Consensus 78 ~vD-lavi~vp~~~~~~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~r-vlGPNc-~Gi~ 142 (608)
.+| ++|-+..+.. +...++.|.+.|++ +||-|+||.+. ++.+++.+.++. ++-||. +|+.
T Consensus 79 ~~~~VvIDFT~P~a-~~~~~~~~~~~g~~-~VvGTTG~~~e---~l~~~~~~~~i~vv~apNfSiGv~ 141 (286)
T PLN02775 79 YPNLIVVDYTLPDA-VNDNAELYCKNGLP-FVMGTTGGDRD---RLLKDVEESGVYAVIAPQMGKQVV 141 (286)
T ss_pred CCCEEEEECCChHH-HHHHHHHHHHCCCC-EEEECCCCCHH---HHHHHHhcCCccEEEECcccHHHH
Confidence 168 6777777764 77888999989987 45568899876 444556666664 888885 4554
No 63
>PRK12349 citrate synthase 3; Provisional
Probab=97.05 E-value=0.0028 Score=68.64 Aligned_cols=89 Identities=12% Similarity=0.063 Sum_probs=68.4
Q ss_pred chhhhheeccCC--CCcccCCCCCCcccccCCcHHHHHHHhhcCCCCChhHHHHHHHHHHHhcCCCCCCccchhhhhhcc
Q 007327 351 THIISTISDDRG--EEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTAR 428 (608)
Q Consensus 351 ~A~~t~I~~~~g--~~i~~~g~dl~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHgl~~st~~aar~~aS 428 (608)
.+..|+||...| ..++|||+|+.||+++. +|+++.|+||+|+.|++.+.+.+++.| .+|+..|+.+. .+..+
T Consensus 13 ~~~~S~IS~id~~~g~L~YRGydi~dLa~~~-sFeeva~LL~~G~LP~~~e~~~f~~~L---~~~~~~p~~v~--~~l~~ 86 (369)
T PRK12349 13 IAAETKISFLDTVKGEIVIQGYDLIELSKTK-EYLDIVHLLLEEHLPNEDEKATLEKKL---KEEYAVPEGVF--NILKA 86 (369)
T ss_pred eeeeeeceeEeCCCCEEEECCccHHHHHccC-CHHHHHHHHHCCCCCCHHHHHHHHHHH---HhccCCCHHHH--HHHHh
Confidence 455577776543 44999999999999998 999999999999888888999999987 58998877732 23333
Q ss_pred --CCCChHHHHHHhhhccC
Q 007327 429 --AGKDLVSSLVSGLLTIG 445 (608)
Q Consensus 429 --t~a~~~~av~agl~a~G 445 (608)
..+++-..+.+++.+++
T Consensus 87 ~p~~~~pm~~l~~~vs~l~ 105 (369)
T PRK12349 87 LPKETHPMDGLRTGVSALA 105 (369)
T ss_pred CCCCCCHHHHHHHHHHHhc
Confidence 24677777777777764
No 64
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=96.96 E-value=0.0067 Score=66.33 Aligned_cols=122 Identities=15% Similarity=0.189 Sum_probs=88.9
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhcCCceeEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCccHHHHHHHHH
Q 007327 166 RPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALK 245 (608)
Q Consensus 166 ~~G~valvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~T~~I~ly~E~g~~~~~~f~~~~r 245 (608)
..|+|++++-.++++...+|.+...|.....++.+|..+ ..-.+.+.++-+.+||++++|++.+-.++.+...+++.+.
T Consensus 255 l~G~ig~i~nGaGl~m~t~D~i~~~gg~paNPlDlgg~a-~~e~~~~aL~~ll~Dp~VdaVlv~i~ggi~~~~~vA~~Ii 333 (392)
T PRK14046 255 LDGDIGCIVNGAGLAMATMDMIKLAGGEPANFLDVGGGA-SPERVAKAFRLVLSDRNVKAILVNIFAGINRCDWVAEGVV 333 (392)
T ss_pred cCCcEEEEeCCccHHHHHHHHHHhcCCCCcCCEEecCCC-CHHHHHHHHHHHHcCCCCCEEEEEcCCCCCCHHHHHHHHH
Confidence 579999999999999999999999998888888887764 3456789999999999999999765534444455555544
Q ss_pred hC----CCCCCEEEEEeCCCccCcccccccCCCCCcCCCCcchHHHHHHHHHHcCC--cccCCHHHHHHHHH
Q 007327 246 QG----KVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGA--VVPTSYEAFESAIK 311 (608)
Q Consensus 246 ~a----~~~KPVvvlk~Grs~~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaGv--i~v~~~~el~~~~~ 311 (608)
++ ..+|||++.-.|... +.....++++|+ .+.+|++|-...+-
T Consensus 334 ~a~~~~~~~kPvvv~l~G~~~-----------------------e~~~~iL~~~Gipvf~~~~~~~a~~~~v 382 (392)
T PRK14046 334 QAAREVGIDVPLVVRLAGTNV-----------------------EEGRKILAESGLPIITADTLAEAAEKAV 382 (392)
T ss_pred HHHHhcCCCCcEEEEcCCCCH-----------------------HHHHHHHHHcCCCeeecCCHHHHHHHHH
Confidence 32 257899765444221 455677899994 55566666554443
No 65
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=96.83 E-value=0.0039 Score=55.71 Aligned_cols=111 Identities=18% Similarity=0.152 Sum_probs=71.2
Q ss_pred cEEEEEcCC--ch-HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecc
Q 007327 11 TQALFYNYK--QL-PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSS 87 (608)
Q Consensus 11 s~avv~g~~--~~-~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi~vp 87 (608)
.+++| |.+ ++ .++.+.+.. .+.++++.++ +.... ...+ .+-.|+++|.|+++++... ++|+++|++|
T Consensus 2 ~v~ii-G~G~~g~~~~~~~~~~~----~~~~v~~v~d-~~~~~-~~~~--~~~~~~~~~~~~~~ll~~~-~~D~V~I~tp 71 (120)
T PF01408_consen 2 RVGII-GAGSIGRRHLRALLRSS----PDFEVVAVCD-PDPER-AEAF--AEKYGIPVYTDLEELLADE-DVDAVIIATP 71 (120)
T ss_dssp EEEEE-STSHHHHHHHHHHHHTT----TTEEEEEEEC-SSHHH-HHHH--HHHTTSEEESSHHHHHHHT-TESEEEEESS
T ss_pred EEEEE-CCcHHHHHHHHHHHhcC----CCcEEEEEEe-CCHHH-HHHH--HHHhcccchhHHHHHHHhh-cCCEEEEecC
Confidence 46778 443 22 666666652 1334565555 63321 0001 2457889999999998754 5999999999
Q ss_pred ChhcHHHHHHHhcCCCCCEEEEec-CCCCHHHHHHHHHHHHhCCCeE
Q 007327 88 FRSAAASSMAALKQPTIRVVAIIA-EGVPEADTKQLIAYARSNNKVV 133 (608)
Q Consensus 88 ~~~~~~~~le~~~~~gv~~~viis-~Gf~e~~~~~l~~~a~~~g~rv 133 (608)
..... +..+.|.++|+ .+++=- -.....+.++|.+.++++|..+
T Consensus 72 ~~~h~-~~~~~~l~~g~-~v~~EKP~~~~~~~~~~l~~~a~~~~~~~ 116 (120)
T PF01408_consen 72 PSSHA-EIAKKALEAGK-HVLVEKPLALTLEEAEELVEAAKEKGVKV 116 (120)
T ss_dssp GGGHH-HHHHHHHHTTS-EEEEESSSSSSHHHHHHHHHHHHHHTSCE
T ss_pred CcchH-HHHHHHHHcCC-EEEEEcCCcCCHHHHHHHHHHHHHhCCEE
Confidence 98744 45555555888 444421 2345557899999999999764
No 66
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=96.79 E-value=0.0043 Score=64.24 Aligned_cols=119 Identities=16% Similarity=0.150 Sum_probs=74.1
Q ss_pred CcEEEEE-cCCch-HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecc
Q 007327 10 TTQALFY-NYKQL-PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSS 87 (608)
Q Consensus 10 ~s~avv~-g~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi~vp 87 (608)
+.++|+| |.-|+ +++++.+.. +.++++.+.++..........+ .+.++|.+++++ .. ++|++|+|.|
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~-----~~~l~~v~~~~~~~~~~~~~~~---~~~~~~~d~~~l-~~--~~DvVve~t~ 70 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDP-----DLRVDWVIVPEHSIDAVRRALG---EAVRVVSSVDAL-PQ--RPDLVVECAG 70 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCC-----CceEEEEEEcCCCHHHHhhhhc---cCCeeeCCHHHh-cc--CCCEEEECCC
Confidence 4678885 33344 777777653 3345655552322111111111 268899999987 42 5899999999
Q ss_pred ChhcHHHHHHHhcCCCCCEEEEecCC-CC-HHHHHHHHHHHHhCCCe-EEcCCcccc
Q 007327 88 FRSAAASSMAALKQPTIRVVAIIAEG-VP-EADTKQLIAYARSNNKV-VIGPATVGG 141 (608)
Q Consensus 88 ~~~~~~~~le~~~~~gv~~~viis~G-f~-e~~~~~l~~~a~~~g~r-vlGPNc~Gi 141 (608)
+.. ..+..+.|-++|+. +++.+.| +. +...++|.+.|+++|.+ .+-|.+.|.
T Consensus 71 ~~~-~~e~~~~aL~aGk~-Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l~v~sga~gg 125 (265)
T PRK13303 71 HAA-LKEHVVPILKAGID-CAVISVGALADEALRERLEQAAEAGGARLHLLSGAIGG 125 (265)
T ss_pred HHH-HHHHHHHHHHcCCC-EEEeChHHhcCHHHHHHHHHHHHHCCCEEEEeChHhhC
Confidence 976 45555666668865 5555655 55 34568899999999986 455555554
No 67
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=96.74 E-value=0.012 Score=61.07 Aligned_cols=114 Identities=13% Similarity=0.105 Sum_probs=77.6
Q ss_pred EEEEEcCCch----HHHHHhhCcccCCCCCCcEEE-EeCCCCC-CccccccCceeecccc------cCCHHHHhhcCCCc
Q 007327 12 QALFYNYKQL----PIQRMLDFDFLCGRETPSVAG-IINPGAE-GFQKLFFGQEEIAIPV------HSTVEAACAAHPMA 79 (608)
Q Consensus 12 ~avv~g~~~~----~~~~l~~~~~~~~~g~~~v~~-v~~p~~~-~~~~~~~g~ev~G~~~------y~sv~~i~~~~p~v 79 (608)
.++|.|+.|| +++.+.+- |.++|+. +. +... .+..++.|. ++|. |.+++++... .+
T Consensus 2 ~V~V~Ga~GkMG~~v~~av~~~------~~~Lv~~~~~-~~~~~~~~~~~~g~---~v~v~~~~~~~~~l~~~~~~--~~ 69 (275)
T TIGR02130 2 QIMVNGCPGKMGKAVAEAADAA------GLEIVPTSFG-GEEEAENEAEVAGK---EILLHGPSEREARIGEVFAK--YP 69 (275)
T ss_pred eEEEeCCCChHHHHHHHHHhcC------CCEEEeeEcc-ccccccchhhhccc---ceeeeccccccccHHHHHhh--cC
Confidence 3556688877 77777764 4567876 55 4322 233334332 7888 9999998753 26
Q ss_pred c-EEEEeccChhcHHHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCC-eEEcCCc-cccc
Q 007327 80 D-VFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNK-VVIGPAT-VGGI 142 (608)
Q Consensus 80 D-lavi~vp~~~~~~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~-rvlGPNc-~Gi~ 142 (608)
| ++|-+..|+. +...++.|.+.|++. |+-|+||.+...++|.+ +.++ .++-||. +|+.
T Consensus 70 d~VvIDFT~P~~-~~~n~~~~~~~gv~~-ViGTTG~~~~~~~~l~~---~~~i~~l~apNfSiGv~ 130 (275)
T TIGR02130 70 ELICIDYTHPSA-VNDNAAFYGKHGIPF-VMGTTGGDREALAKLVA---DAKHPAVIAPNMAKQIV 130 (275)
T ss_pred CEEEEECCChHH-HHHHHHHHHHCCCCE-EEcCCCCCHHHHHHHHH---hcCCCEEEECcccHHHH
Confidence 8 8888888875 677889999899875 45588999876666643 3456 4888984 5654
No 68
>cd06112 citrate_synt_like_1_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, an
Probab=96.67 E-value=0.0066 Score=65.86 Aligned_cols=92 Identities=13% Similarity=-0.002 Sum_probs=67.9
Q ss_pred CcchhhhheeccCCC--CcccCCCCCCcccccCCcHHHHHHHhhcCCCCChhHHHHHHHHHHHhcCCCCCCccchhhhhh
Q 007327 349 APTHIISTISDDRGE--EPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVT 426 (608)
Q Consensus 349 ~i~A~~t~I~~~~g~--~i~~~g~dl~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHgl~~st~~aar~~ 426 (608)
.+.+..|+||.-.|+ .+.|||+++.||+++. +|++++|+||+|+.|++.+.+.++..|.-. ..-+-. +..+.
T Consensus 7 gv~~~~t~is~id~~~G~L~yRGy~i~dL~~~~-~Feev~~LLl~G~lP~~~el~~~~~~L~~~---~~lp~~--v~~~i 80 (373)
T cd06112 7 GVPAAESSISYIDGKNGILEYRGYDIEELAEYS-SFEEVALLLLDGDLPTAAELEEFDKELRQH---RRVKYN--IRDMM 80 (373)
T ss_pred CCeeeeeeceEEeCCCCEEEECCccHHHHhcCC-CHHHHHHHHHcCCCCCHHHHHHHHHHHHHh---cCCCHH--HHHHH
Confidence 445566888877654 4789999999999988 999999999999999999999999988654 332332 22233
Q ss_pred cc--CCCChHHHHHHhhhccCC
Q 007327 427 AR--AGKDLVSSLVSGLLTIGP 446 (608)
Q Consensus 427 aS--t~a~~~~av~agl~a~Gp 446 (608)
.+ ..++|-..+.+++.+++.
T Consensus 81 ~~~p~~~hpm~~L~~~vs~l~~ 102 (373)
T cd06112 81 KCFPETGHPMDMLQATVAALGM 102 (373)
T ss_pred HhCCCCCCHHHHHHHHHHhhhc
Confidence 22 236788888888887754
No 69
>PRK14037 citrate synthase; Provisional
Probab=96.65 E-value=0.0067 Score=65.86 Aligned_cols=92 Identities=10% Similarity=0.044 Sum_probs=66.0
Q ss_pred CcchhhhheeccCCC--CcccCCCCCCcccccCCcHHHHHHHhhcCCCCChhHHHHHHHHHHHhcCCCCCCccchhhhhh
Q 007327 349 APTHIISTISDDRGE--EPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVT 426 (608)
Q Consensus 349 ~i~A~~t~I~~~~g~--~i~~~g~dl~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHgl~~st~~aar~~ 426 (608)
.+.+..|+||.-.++ .+.|||+++.||+++. +|++++|+||+|+.|++++.+.+++.|.-+ ..-+.. +..+.
T Consensus 10 gv~~~~t~is~id~~~g~L~yRGy~i~dL~~~~-~Feev~~LLl~G~lP~~~e~~~f~~~L~~~---~~lp~~--v~~~~ 83 (377)
T PRK14037 10 NVIIKVTNLTFIDGEKGILRYRGYNIEDLVNYG-SYEETIYLMLYGELPTKKELNDLKEKLNEE---YEVPQE--VIDSI 83 (377)
T ss_pred CCeeeeeeceEEeCCCCEEEECCccHHHHHccC-CHHHHHHHHHcCCCCCHHHHHHHHHHHHHh---cCCCHH--HHHHH
Confidence 455666777766543 4789999999999998 999999999999999999999999988544 222222 22223
Q ss_pred ccC--CCChHHHHHHhhhccCC
Q 007327 427 ARA--GKDLVSSLVSGLLTIGP 446 (608)
Q Consensus 427 aSt--~a~~~~av~agl~a~Gp 446 (608)
.+- .++|-..+.+++.+++.
T Consensus 84 ~~~p~~~hpm~~l~~~vs~l~~ 105 (377)
T PRK14037 84 YLMPRDSDAIGLMEAAFAALAS 105 (377)
T ss_pred HhCCccCCcHHHHHHHHHhhhc
Confidence 233 24677777777777653
No 70
>PRK14036 citrate synthase; Provisional
Probab=96.65 E-value=0.0077 Score=65.43 Aligned_cols=92 Identities=15% Similarity=0.066 Sum_probs=67.7
Q ss_pred CcchhhhheeccCCC--CcccCCCCCCcccccCCcHHHHHHHhhcCCCCChhHHHHHHHHHHHhcCCCCCCccchhhhhh
Q 007327 349 APTHIISTISDDRGE--EPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVT 426 (608)
Q Consensus 349 ~i~A~~t~I~~~~g~--~i~~~g~dl~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHgl~~st~~aar~~ 426 (608)
.+.+..|+||.-.|+ .+.|||+++.||+++. +|++++|+||+|+.|++++.+.++..|. +|..-+.. +..+.
T Consensus 10 gv~~~~t~Is~idg~~G~L~yRGy~i~dL~~~~-~Feev~~LLl~G~lP~~~el~~f~~~L~---~~~~lp~~--v~~~i 83 (377)
T PRK14036 10 GVPATQSSISYVDGQKGILEYRGYPIEELAEKS-SFLETAYLLIWGELPTAEELEEFEQEVR---MHRRVKYR--IRDMM 83 (377)
T ss_pred CCeeeeeeceEEECCCCEEEECCccHHHHHccC-CHHHHHHHHHcCCCCCHHHHHHHHHHHH---HccCCCHH--HHHHH
Confidence 445566888877665 4789999999999998 9999999999999999999999999774 44443333 22333
Q ss_pred ccC--CCChHHHHHHhhhccCC
Q 007327 427 ARA--GKDLVSSLVSGLLTIGP 446 (608)
Q Consensus 427 aSt--~a~~~~av~agl~a~Gp 446 (608)
.+- .++|-..+.+++++++.
T Consensus 84 ~~~p~~~hpm~~L~~~vs~l~~ 105 (377)
T PRK14036 84 KCFPETGHPMDALQASAAALGL 105 (377)
T ss_pred HhCCCCCCHHHHHHHHHHHhhh
Confidence 332 35777778887777653
No 71
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=96.58 E-value=0.033 Score=61.42 Aligned_cols=121 Identities=17% Similarity=0.217 Sum_probs=96.2
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhcCCceeEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCccH----HHHH
Q 007327 166 RPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDE----YSLV 241 (608)
Q Consensus 166 ~~G~valvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~T~~I~ly~E~g~~~~----~~f~ 241 (608)
..|+|+.+.--++++.+.+|.....|--...|..+|+.+ +.-.+.+.++-+..||++|+|.+-+=-|+.+- +.+.
T Consensus 290 ldG~Ig~~vnGaGlamaTmD~i~~~Gg~pANFlD~GG~a-~~~~v~~a~~ii~~d~~vk~iliNIfGGI~~cd~iA~gii 368 (422)
T PLN00124 290 LDGEIGCMVNGAGLAMATMDIIKLHGGSPANFLDVGGNA-SEQQVVEAFKILTSDDKVKAILVNIFGGIMKCDVIASGIV 368 (422)
T ss_pred CCCcEEEEecCchHHHHHHHHHHHcCCCcceeeecCCCC-CHHHHHHHHHHHhcCCCCcEEEEEecCCccchHHHHHHHH
Confidence 589999999999999999999999999999999999987 25667889999999999999999555345443 3456
Q ss_pred HHHHhCCCCCCEEEEEeCCCccCcccccccCCCCCcCCCCcchHHHHHHHHHHcC--CcccCCHHHHHHHH
Q 007327 242 EALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAG--AVVPTSYEAFESAI 310 (608)
Q Consensus 242 ~~~r~a~~~KPVvvlk~Grs~~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaG--vi~v~~~~el~~~~ 310 (608)
+++++...++|||+-..|.+.. .=...+++.| ++.++|++|-...+
T Consensus 369 ~a~~~~~~~~pivvRl~Gtn~~-----------------------~g~~~l~~~~~~~~~~~~l~~A~~~~ 416 (422)
T PLN00124 369 NAAKQVGLKVPLVVRLEGTNVD-----------------------QGKRILKESGMTLITAEDLDDAAEKA 416 (422)
T ss_pred HHHHhcCCCCcEEEEcCCCCHH-----------------------HHHHHHHhCCCCeEEcCCHHHHHHHH
Confidence 6677766789999977777764 2347888999 66777777755444
No 72
>cd06118 citrate_synt_like_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and
Probab=96.56 E-value=0.0026 Score=68.66 Aligned_cols=90 Identities=14% Similarity=0.134 Sum_probs=67.7
Q ss_pred cchhhhheeccCCC--CcccCCCCCCcccccCCcHHHHHHHhhcCCCCChhHHHHHHHHHHHhcCCCCCCccchhhhhhc
Q 007327 350 PTHIISTISDDRGE--EPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTA 427 (608)
Q Consensus 350 i~A~~t~I~~~~g~--~i~~~g~dl~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHgl~~st~~aar~~a 427 (608)
+....|+|+.-.++ .+.|||+|+.||+++. +|+++.|+||+|+.|++++.+.++..| .+|+..|+. +..+..
T Consensus 6 ~~v~~s~is~id~~~g~l~YRG~~i~dL~~~~-~feeva~LL~~G~lP~~~el~~f~~~L---~~~~~~p~~--v~~~~~ 79 (358)
T cd06118 6 VKAKETSISYIDGDEGILRYRGYDIEELAEKS-SFEEVAYLLLYGKLPTKEELAEFKKKL---ASHRALPEH--VVEILD 79 (358)
T ss_pred ceeeeeeeeEEeCCCCeEEECCccHHHHHhcC-CHHHHHHHHHcCCCCCHHHHHHHHHHH---HHccCCCHH--HHHHHH
Confidence 34455666665444 6999999999999998 999999999999888888888888877 678887666 222332
Q ss_pred c--CCCChHHHHHHhhhccC
Q 007327 428 R--AGKDLVSSLVSGLLTIG 445 (608)
Q Consensus 428 S--t~a~~~~av~agl~a~G 445 (608)
+ ...++-..+.+++++++
T Consensus 80 ~~p~~~~pm~~l~~~~~~l~ 99 (358)
T cd06118 80 LLPKNAHPMDVLRTAVSALG 99 (358)
T ss_pred hcCCCCChHHHHHHHHHhhh
Confidence 3 35677777777777764
No 73
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=96.50 E-value=0.044 Score=58.80 Aligned_cols=124 Identities=18% Similarity=0.228 Sum_probs=101.6
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhcCCceeEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCccHH----HHH
Q 007327 166 RPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEY----SLV 241 (608)
Q Consensus 166 ~~G~valvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~T~~I~ly~E~g~~~~~----~f~ 241 (608)
..|+|+.+...++++.+.+|...-.|--...|..+|+.+. .-.+.+.++.+..||++|+|.+-+=-|+.... -..
T Consensus 254 LdG~IG~ivNGAGLaMaTmDii~~~Gg~PANFLDvGGgA~-~e~v~~a~~~il~d~~vk~IfVNIfGGI~rcD~vA~GIi 332 (387)
T COG0045 254 LDGNIGCIVNGAGLAMATMDIVKLYGGKPANFLDVGGGAT-AERVKEAFKLILSDPNVKAIFVNIFGGITRCDEVAEGII 332 (387)
T ss_pred ecCcEEEEecChhHHHHHHHHHHHcCCCCcceeecCCCCC-HHHHHHHHHHHhcCCCccEEEEEEccCcCccHHHHHHHH
Confidence 4699999999999999999999999999999999999884 34488999999999999999998885555544 345
Q ss_pred HHHHhCCCCCCEEEEEeCCCccCcccccccCCCCCcCCCCcchHHHHHHHHHHcC--CcccCCHHHHHHHHHHH
Q 007327 242 EALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAG--AVVPTSYEAFESAIKET 313 (608)
Q Consensus 242 ~~~r~a~~~KPVvvlk~Grs~~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaG--vi~v~~~~el~~~~~~~ 313 (608)
+++++...++|+|+=..|.+.. .=...++++| +..+++.+|....+-.+
T Consensus 333 ~Al~e~~~~vPlVVRL~GtN~e-----------------------~Gk~iL~esg~~i~~~~~l~~aa~k~v~~ 383 (387)
T COG0045 333 AALKEVGVNVPLVVRLEGTNVE-----------------------EGKRILAESGLNIIAADDLDEAAEKAVEL 383 (387)
T ss_pred HHHHhcCCCCCEEEEcCCCCHH-----------------------HHHHHHHHcCCceEecccHHHHHHHHHHH
Confidence 5667766789999998888774 3347889999 88888888877665444
No 74
>cd06108 Ec2MCS_like Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like. 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxalacetate (OAA) to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and OAA to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group contains proteins similar to the E. coli 2MCS, EcPrpC. EcPrpC is one of two CS isozymes in the gram-negative E. coli. EcPrpC is a dimeric (type I ) CS; it is induced during growth on propionate and prefers PrCoA as a substrate though it has partial CS activity with AcCoA. This group also includes Salmonella typhimurium PrpC and Ralstonia eutropha (Re) 2-MCS1 which are also induced during growth on propionate and prefer PrCoA as substrate, but can also use AcCoA. Re 2-MCS1 can use butyryl-CoA and valeryl-CoA at a lower rate. A second Ralstonia eutropha 2MC
Probab=96.39 E-value=0.016 Score=62.58 Aligned_cols=108 Identities=13% Similarity=0.058 Sum_probs=70.2
Q ss_pred CcchhhhheeccCCC--CcccCCCCCCcccccCCcHHHHHHHhhcCCCCChhHHHHHHHHHHHhcCCCCCCccchhhhhh
Q 007327 349 APTHIISTISDDRGE--EPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVT 426 (608)
Q Consensus 349 ~i~A~~t~I~~~~g~--~i~~~g~dl~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHgl~~st~~aar~~ 426 (608)
.+.+..|+||+-.|+ .+.||||++.||..+. +|+++.|+||+|+-|+.++.+-++.-|.-+ ..-+-. +-.+.
T Consensus 5 gv~~~~t~is~id~~~g~L~yRGy~i~dLa~~~-sfeeva~LLl~G~lPt~~el~~f~~~L~~~---~~lp~~--v~~~i 78 (363)
T cd06108 5 GVVAGQTAISTVGKGGKGLTYRGYDIEDLAENA-TFEEVAYLLLYGKLPTRKQLDAYKTKLVAL---RRLPAA--LKTVL 78 (363)
T ss_pred CCeeeeeeCceEeCCCCEEEECCccHHHHHhcC-CHHHHHHHHHcCCCCCHHHHHHHHHHHHHh---cCCCHH--HHHHH
Confidence 345566778776555 5999999999999888 999999999999988888877787766433 322222 11122
Q ss_pred c--cCCCChHHHHHHhhhccCCCC-----cCccHHHHHHHHHH
Q 007327 427 A--RAGKDLVSSLVSGLLTIGPRF-----GGAIDDAARYFKDA 462 (608)
Q Consensus 427 a--St~a~~~~av~agl~a~Gp~h-----GGa~~~a~~~l~~~ 462 (608)
. ...++|-..+.+++.+++-.. -...+.+.+++.++
T Consensus 79 ~~~p~~~hpm~~L~~~vs~l~~~d~~~~~~~~~~~a~rlia~~ 121 (363)
T cd06108 79 ELIPKDSHPMDVMRTGCSMLGCLEPENEFSQQYEIAIRLLAIF 121 (363)
T ss_pred HhCCCCCChHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHHH
Confidence 2 223567777777777654221 11234455666554
No 75
>TIGR01800 cit_synth_II 2-methylcitrate synthase/citrate synthase II. Members of this family are dimeric enzymes with activity as 2-methylcitrate synthase, citrate synthase, or both. Many Gram-negative species have a hexameric citrate synthase, termed citrate synthase I (TIGR01798). Members of this family (TIGR01800) appear as a second citrate synthase isozyme but typically are associated with propionate metabolism and synthesize 2-methylcitrate from propionyl-CoA; citrate synthase activity may be incidental. A number of species, including Thermoplasma acidophilum, Pyrococcus furiosus, and the Antarctic bacterium DS2-3R have a bifunctional member of this family as the only citrate synthase isozyme.
Probab=96.33 E-value=0.019 Score=62.24 Aligned_cols=90 Identities=12% Similarity=0.086 Sum_probs=63.5
Q ss_pred CcchhhhheeccCCCC--cccCCCCCCcccccCCcHHHHHHHhhcCCCCChhHHHHHHHHHHHhcCCCCCCccchhhhhh
Q 007327 349 APTHIISTISDDRGEE--PCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVT 426 (608)
Q Consensus 349 ~i~A~~t~I~~~~g~~--i~~~g~dl~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHgl~~st~~aar~~ 426 (608)
.+....|+||...++. +.|||+|+.||+++. +|++++|+||+|+.|++.+.+.+++.|.-.. .- +- ....+.
T Consensus 5 g~~~~~t~Is~id~~~g~l~yRG~~i~dL~~~~-~feeva~LL~~G~lP~~~e~~~f~~~l~~~~---~~-p~-~~~~~~ 78 (368)
T TIGR01800 5 GVIADETALSTIDGSEGILTYRGYDIEDLAEHA-SFEEVAYLLLHGKLPTRSELRKFKTELAKLR---GL-PD-EVIELI 78 (368)
T ss_pred CCeeeeeeceEEECCcceEEECCeeHHHHHhcC-CHHHHHHHHHcCCCCCHHHHHHHHHHHHhhc---CC-CH-HHHHHH
Confidence 3455667888887777 899999999999988 9999999999999899888888988766442 21 11 122222
Q ss_pred ccC--CCChHHHHHHhhhcc
Q 007327 427 ARA--GKDLVSSLVSGLLTI 444 (608)
Q Consensus 427 aSt--~a~~~~av~agl~a~ 444 (608)
.+- ..++-..+.++++++
T Consensus 79 ~~~p~~~~pm~~l~~~ls~l 98 (368)
T TIGR01800 79 EALPAESHPMDALRTAVSYL 98 (368)
T ss_pred HhCCCCCCcHHHHHHHHHHh
Confidence 222 355666666666665
No 76
>cd06115 AthCS_per_like Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains three Arabidopsis peroxisomal CS proteins, CYS1, -2, and -3 which are involved in the glyoxylate cycle. AthCYS1, in addition to a peroxisomal targeting sequence, has a predicted secretory signal peptide; it may be targeted to both the secretory pathway and the peroxisomes and is thought to be located in the extracellular matrix. AthCSY1 is expr
Probab=96.32 E-value=0.02 Score=62.87 Aligned_cols=92 Identities=18% Similarity=0.199 Sum_probs=68.2
Q ss_pred CCcchhhhheeccCCCC--cccCCCCCCcccccCCcHHHHHHHhhcCCCCChhHHHHHHHHHHHhcCCCCCCccchhhhh
Q 007327 348 RAPTHIISTISDDRGEE--PCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIV 425 (608)
Q Consensus 348 p~i~A~~t~I~~~~g~~--i~~~g~dl~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHgl~~st~~aar~ 425 (608)
-.+++..|+||.-.|+. +.||||++.||.++. +|+++.|+||+|+-|++++.+-++.-|. .|..-|.. +..+
T Consensus 30 ~~~~~~~t~Is~iDg~~G~L~YRGy~I~dLa~~~-~feEv~~LLl~G~LPt~~el~~f~~~L~---~~~~lp~~--v~~~ 103 (410)
T cd06115 30 LNTAVVRSKISYIDGDKGILRYRGYPIEELAEKS-TFLEVAYLLIYGNLPTKSQLSDWEFAVS---QHTAVPTG--VLDM 103 (410)
T ss_pred CCceEEEeeCeeEeCCCCeEEECCccHHHHHhcC-CHHHHHHHHHcCCCcCHHHHHHHHHHHH---HccCCCHH--HHHH
Confidence 35566778888877764 789999999999988 9999999999999999888888888774 44443333 2323
Q ss_pred hccC--CCChHHHHHHhhhccC
Q 007327 426 TARA--GKDLVSSLVSGLLTIG 445 (608)
Q Consensus 426 ~aSt--~a~~~~av~agl~a~G 445 (608)
.-+- .++|-..+.+++++++
T Consensus 104 i~~~p~~~hPM~~L~~~vs~l~ 125 (410)
T cd06115 104 IKSFPHDAHPMGMLVSAISALS 125 (410)
T ss_pred HHhCCCCCCHHHHHHHHHHHHh
Confidence 3333 4677777777777764
No 77
>cd06109 BsCS-I_like Bacillus subtilis (Bs) citrate synthase CS-I_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains proteins similar to BsCS-I, one of two CS isozymes in the gram-positive B. subtilis. The majority of CS activity in B. subtilis is provided by the other isozyme, BsCS-II (not included in this group). BsCS-
Probab=96.23 E-value=0.022 Score=61.26 Aligned_cols=107 Identities=18% Similarity=0.130 Sum_probs=71.5
Q ss_pred CcchhhhheeccCCC--CcccCCCCCCcccccCCcHHHHHHHhhcCCCCChhHHHHHHHHHHHhcCCCCCCccchhhhhh
Q 007327 349 APTHIISTISDDRGE--EPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVT 426 (608)
Q Consensus 349 ~i~A~~t~I~~~~g~--~i~~~g~dl~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHgl~~st~~aar~~ 426 (608)
.+.+..|+||.-.|+ .+.||||++.||.++. +|+++.|+||+|+-|++++.+-+..-|.-. ..-+..+... +-
T Consensus 5 gv~~~~t~Is~idg~~G~L~YRGy~i~dL~~~~-~feev~~LLl~G~lP~~~el~~f~~~l~~~---~~lp~~v~~~-~~ 79 (349)
T cd06109 5 GVVAAETVLSDVDGEAGRLIIRGYSVEDLAGSA-SFEDVAALLWNGFFPDLPELEEFRAALAAA---RALPDVVAAL-LP 79 (349)
T ss_pred CceeeeeeceeEeCCCCeEEECCccHHHHHhhC-CHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCCCHHHHHH-HH
Confidence 345566888877654 4899999999999988 999999999999998888877777765543 2222221111 11
Q ss_pred ccCCCChHHHHHHhhhccCCCCcCccHHHHHHHHHH
Q 007327 427 ARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDA 462 (608)
Q Consensus 427 aSt~a~~~~av~agl~a~Gp~hGGa~~~a~~~l~~~ 462 (608)
.-...+|-..+.+++.+++... ..+.+.+++..+
T Consensus 80 ~~~~~~pm~~l~~~~s~~~~~~--~~~~a~~liA~~ 113 (349)
T cd06109 80 ALAGLDPMDALRALLALLPDSP--DLATALRLLAAA 113 (349)
T ss_pred hCCCcCHHHHHHHHHHhcCchh--HHHHHHHHHHHH
Confidence 1144677777877777765431 244555655544
No 78
>PRK14035 citrate synthase; Provisional
Probab=96.16 E-value=0.022 Score=61.81 Aligned_cols=92 Identities=14% Similarity=0.079 Sum_probs=66.3
Q ss_pred CcchhhhheeccCCCCcccCCCCCCcccccCCcHHHHHHHhhcCCCCChhHHHHHHHHHHHhcCCCCCCccchhhhhhcc
Q 007327 349 APTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTAR 428 (608)
Q Consensus 349 ~i~A~~t~I~~~~g~~i~~~g~dl~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHgl~~st~~aar~~aS 428 (608)
.+++..|+||+-.|+.++|||+++.||..+. +|+++.|+||+|+-|++++.+-++.-|.- |..-+-. +...+-..
T Consensus 9 ~v~~~~s~Is~id~~~L~YRGy~i~dLa~~~-~Feeva~LLl~G~lP~~~el~~f~~~L~~---~~~lp~~-v~~~i~~~ 83 (371)
T PRK14035 9 GVIAAETKISSIIDSQLTYAGYDIDDLAENA-SFEEVIFLLWNYRLPTEEELAHLKGKLRK---YMTLNDR-VYQHFEEY 83 (371)
T ss_pred CceEeeeeeeEecCCEeEECCccHHHHHhcC-CHHHHHHHHHCCcCCCHHHHHHHHHHHHH---cCCCCHH-HHHHHHhc
Confidence 4556668888888888999999999999888 99999999999998888887777776553 3333333 22212221
Q ss_pred --CCCChHHHHHHhhhccC
Q 007327 429 --AGKDLVSSLVSGLLTIG 445 (608)
Q Consensus 429 --t~a~~~~av~agl~a~G 445 (608)
..++|-..+.+++.+++
T Consensus 84 ~~~~~hpm~~l~~~vs~l~ 102 (371)
T PRK14035 84 STDHVHPMTALRTSVSYLA 102 (371)
T ss_pred CCcCCCHHHHHHHHHHHHh
Confidence 23667777777777764
No 79
>cd06116 CaCS_like Chloroflexus aurantiacus (Ca) citrate synthase (CS)_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group is similar to gram-negative Escherichia coli (Ec) CS (type II, gltA) and Arabidopsis thaliana (Ath) peroxisomal (Per) CS. However EcCS and AthPerCS are not found in this group. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers w
Probab=96.14 E-value=0.026 Score=61.47 Aligned_cols=95 Identities=18% Similarity=0.112 Sum_probs=67.8
Q ss_pred CCcchhhhheeccCCC--CcccCCCCCCcccccCCcHHHHHHHhhcCCCCChhHHHHHHHHHHHhcCCCCCCccchhhhh
Q 007327 348 RAPTHIISTISDDRGE--EPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIV 425 (608)
Q Consensus 348 p~i~A~~t~I~~~~g~--~i~~~g~dl~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHgl~~st~~aar~ 425 (608)
-.+++..|+||.-.|+ .+.||||++.||.++. +|+++.|+||+|+-|+.++.+.+..-|. .|..-+-.+....-
T Consensus 10 ~~v~~~~t~Is~iDg~~G~L~YRGy~I~dL~~~~-~feEv~yLLl~G~lPt~~el~~f~~~L~---~~~~lp~~v~~~l~ 85 (384)
T cd06116 10 LNTASCKSAITYIDGEKGILRYRGYPIEQLAEQS-SYLEVAYLLLHGELPTKERLAQWVYDIT---RHTMTHENLKKFMD 85 (384)
T ss_pred CCeeEEeeEeeeEeCCCCeEEECCccHHHHhccC-CHHHHHHHHHCCCCCCHHHHHHHHHHHH---HccCCCHHHHHHHH
Confidence 3456677888877665 4789999999999988 9999999999999998888888888773 44444333122211
Q ss_pred hccCCCChHHHHHHhhhccCC
Q 007327 426 TARAGKDLVSSLVSGLLTIGP 446 (608)
Q Consensus 426 ~aSt~a~~~~av~agl~a~Gp 446 (608)
.-.-.++|-..+.+++.+++.
T Consensus 86 ~~p~~~hPM~~L~~~vs~l~~ 106 (384)
T cd06116 86 GFRYDAHPMGILISSVAALST 106 (384)
T ss_pred hcCcCCCcHHHHHHHHHhhhh
Confidence 112346777778888877653
No 80
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=96.11 E-value=0.015 Score=60.49 Aligned_cols=119 Identities=11% Similarity=0.038 Sum_probs=72.1
Q ss_pred CCCcEEEEE-cCCch-HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeec-ccccCCHHHHhhcCCCccEEEE
Q 007327 8 SKTTQALFY-NYKQL-PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIA-IPVHSTVEAACAAHPMADVFIN 84 (608)
Q Consensus 8 ~p~s~avv~-g~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G-~~~y~sv~~i~~~~p~vDlavi 84 (608)
+|..++||| |.-|+ +.+++.+.. . +.++++..+ +.... ...+ .+-.| .+.|.+++++.. ++|++++
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~~-~---~~el~aV~d-r~~~~-a~~~--a~~~g~~~~~~~~eell~---~~D~Vvi 73 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRGL-P---GLTLSAVAV-RDPQR-HADF--IWGLRRPPPVVPLDQLAT---HADIVVE 73 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhcC-C---CeEEEEEEC-CCHHH-HHHH--HHhcCCCcccCCHHHHhc---CCCEEEE
Confidence 567899995 33344 777777530 0 223443334 42210 0000 01233 467899999864 4899999
Q ss_pred eccChhcHHHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCeE-EcCCccc
Q 007327 85 FSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVV-IGPATVG 140 (608)
Q Consensus 85 ~vp~~~~~~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~rv-lGPNc~G 140 (608)
++|... ..+..+.+.++|.. +++.+.|= -.+.++|.+.|+++|.++ ++|..++
T Consensus 74 ~tp~~~-h~e~~~~aL~aGk~-Vi~~s~ga-l~~~~~L~~~A~~~g~~l~v~sGa~~ 127 (271)
T PRK13302 74 AAPASV-LRAIVEPVLAAGKK-AIVLSVGA-LLRNEDLIDLARQNGGQIIVPTGALL 127 (271)
T ss_pred CCCcHH-HHHHHHHHHHcCCc-EEEecchh-HHhHHHHHHHHHHcCCEEEEcchHHH
Confidence 999976 55666666667854 55555441 124689999999999986 7665543
No 81
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=96.11 E-value=0.018 Score=59.65 Aligned_cols=112 Identities=11% Similarity=0.043 Sum_probs=70.0
Q ss_pred CcEEEEE-cCCch-HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecc
Q 007327 10 TTQALFY-NYKQL-PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSS 87 (608)
Q Consensus 10 ~s~avv~-g~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi~vp 87 (608)
+.++||| |.-|+ +.+.+.+.+. +.++++.++ +.... ...+ .+-.|.+.|.+++++.+ ++|++++|+|
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~----~~elv~v~d-~~~~~-a~~~--a~~~~~~~~~~~~ell~---~~DvVvi~a~ 70 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRI----NAELYAFYD-RNLEK-AENL--ASKTGAKACLSIDELVE---DVDLVVECAS 70 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCC----CeEEEEEEC-CCHHH-HHHH--HHhcCCeeECCHHHHhc---CCCEEEEcCC
Confidence 4678885 32233 6777766421 223555555 42210 0111 12346788999999863 5899999999
Q ss_pred ChhcHHHHHHHhcCCCCCEEEEecCC-C-CHHHHHHHHHHHHhCCCeEE
Q 007327 88 FRSAAASSMAALKQPTIRVVAIIAEG-V-PEADTKQLIAYARSNNKVVI 134 (608)
Q Consensus 88 ~~~~~~~~le~~~~~gv~~~viis~G-f-~e~~~~~l~~~a~~~g~rvl 134 (608)
+.. ..+..+.+.++|.. +++.+.| + .+...++|.+.|+++|.++.
T Consensus 71 ~~~-~~~~~~~al~~Gk~-Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~ 117 (265)
T PRK13304 71 VNA-VEEVVPKSLENGKD-VIIMSVGALADKELFLKLYKLAKENNCKIY 117 (265)
T ss_pred hHH-HHHHHHHHHHcCCC-EEEEchHHhcCHHHHHHHHHHHHHcCCEEE
Confidence 876 55555555557754 5556654 3 34567899999999998864
No 82
>PRK14032 citrate synthase; Provisional
Probab=96.10 E-value=0.0086 Score=66.35 Aligned_cols=95 Identities=18% Similarity=0.211 Sum_probs=69.8
Q ss_pred CcchhhhheeccCC------------CCcccCCCCCCcccccC-----CcHHHHHHHhhcCCCCChhHHHHHHHHHHHhc
Q 007327 349 APTHIISTISDDRG------------EEPCYAGVPMSSIVEQG-----YGVGDVISLLWFKRSLPRYCTQFIEICIMLCA 411 (608)
Q Consensus 349 ~i~A~~t~I~~~~g------------~~i~~~g~dl~~li~~~-----~~~~~~l~~l~~~~~~~~~~~~~l~~~lvl~a 411 (608)
.+.+-.|+||.-.| ..+.|||+++.||+++. .+|+++.|+||+|+-|+.++.+.+++.|.-+.
T Consensus 40 gv~~~~t~is~v~~~~~~dg~~~~~~G~L~YRGy~I~dLa~~~~~~~~~~FeEv~~LLl~G~LPt~~el~~f~~~L~~~~ 119 (447)
T PRK14032 40 GVLVGLTNIGDVHGYEIDDGEKIPDEGKLYYRGYDIKDLVNGFLKEKRFGFEEVAYLLLFGELPTKEELAEFTELLGDYR 119 (447)
T ss_pred CeEEeeeEEeeeeceeecCCcccCCCCceeECCccHHHHHhhcccccCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 44456677766555 24899999999999884 48999999999999999999999999986554
Q ss_pred CCCCCCccchhhhhhccC-CCChHHHHHHhhhccCCC
Q 007327 412 DHGPCVSGAHNTIVTARA-GKDLVSSLVSGLLTIGPR 447 (608)
Q Consensus 412 DHgl~~st~~aar~~aSt-~a~~~~av~agl~a~Gp~ 447 (608)
+ .+..++.++..+. .++|-..+.++++++|..
T Consensus 120 ~----lp~~~v~~~i~~~p~~hPM~~L~a~vsaL~~~ 152 (447)
T PRK14032 120 E----LPDGFTRDMILKAPSKDIMNSLARSVLALYSY 152 (447)
T ss_pred C----CCHHHHHHHHHhCCCcCHHHHHHHHHHhhhhc
Confidence 4 3331344444333 358888999999888643
No 83
>PRK12351 methylcitrate synthase; Provisional
Probab=96.09 E-value=0.032 Score=60.69 Aligned_cols=92 Identities=10% Similarity=0.044 Sum_probs=67.4
Q ss_pred CcchhhhheeccCCC--CcccCCCCCCcccccCCcHHHHHHHhhcCCCCChhHHHHHHHHHHHhcCCCCCCccchhhhhh
Q 007327 349 APTHIISTISDDRGE--EPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVT 426 (608)
Q Consensus 349 ~i~A~~t~I~~~~g~--~i~~~g~dl~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHgl~~st~~aar~~ 426 (608)
.+.+.-|+||+..|+ .+.||||++.||..+. +|+++.|+||+|+-|++++.+.++.-|. .|..-+-. +..+.
T Consensus 14 gv~~~~T~is~i~~~~g~L~YRGy~I~dLa~~~-~feeva~LL~~G~LP~~~el~~f~~~L~---~~~~lp~~--v~~~i 87 (378)
T PRK12351 14 GVVAGNTALCTVGKSGNDLHYRGYDILDLAEHC-EFEEVAHLLVHGKLPTQAELAAYKTKLK---ALRGLPAA--VKTVL 87 (378)
T ss_pred CeeeccccCeeEecCCCEEEECCccHHHHHhcC-CHHHHHHHHHCCCCCCHHHHHHHHHHHH---HhCCCCHH--HHHHH
Confidence 344556788877654 5899999999999888 9999999999999888888888888764 34433333 23333
Q ss_pred ccC--CCChHHHHHHhhhccCC
Q 007327 427 ARA--GKDLVSSLVSGLLTIGP 446 (608)
Q Consensus 427 aSt--~a~~~~av~agl~a~Gp 446 (608)
.+- .++|-..+.+++++++.
T Consensus 88 ~~~p~~~hPM~~L~~~vs~l~~ 109 (378)
T PRK12351 88 EAIPAAAHPMDVMRTGVSVLGC 109 (378)
T ss_pred HhCCccCCHHHHHHHHHHhhcc
Confidence 333 36788888888888764
No 84
>cd06113 citrate_synt_like_1_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) a carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) h
Probab=96.05 E-value=0.0075 Score=66.13 Aligned_cols=81 Identities=16% Similarity=0.141 Sum_probs=60.0
Q ss_pred CcccCCCCCCcccccC-----CcHHHHHHHhhcCCCCChhHHHHHHHHHHHhcCCCCCCccchhhhhhccCC-CChHHHH
Q 007327 364 EPCYAGVPMSSIVEQG-----YGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAG-KDLVSSL 437 (608)
Q Consensus 364 ~i~~~g~dl~~li~~~-----~~~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHgl~~st~~aar~~aSt~-a~~~~av 437 (608)
.+.||||++.||+.+. .+|++++|+||+|+.|++++.+.++..|.-+ ..-++. .+..+..+.. .+|-..+
T Consensus 37 ~L~yRGy~I~dLa~~~p~~~~~sFEev~yLLl~G~LPt~~el~~f~~~L~~~---~~lp~~-~~~~~i~~~p~~hpM~~L 112 (406)
T cd06113 37 KLYYRGYDVEDLVNGAQKENRFGFEETAYLLLFGYLPNKEELEEFCEILSSY---RTLPDN-FVEDVILKAPSKDIMNKL 112 (406)
T ss_pred eeeECCCcHHHHHhhcccccCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHh---cCCCHH-HHHHHHHhCCCcCHHHHH
Confidence 5899999999988652 3899999999999999999999999988544 433333 2232433333 4888889
Q ss_pred HHhhhccCCCC
Q 007327 438 VSGLLTIGPRF 448 (608)
Q Consensus 438 ~agl~a~Gp~h 448 (608)
.++++++|...
T Consensus 113 ~a~v~~l~~~~ 123 (406)
T cd06113 113 QRSVLALYSYD 123 (406)
T ss_pred HHHHHhccccC
Confidence 99888887543
No 85
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=95.97 E-value=0.024 Score=54.13 Aligned_cols=110 Identities=12% Similarity=0.040 Sum_probs=72.7
Q ss_pred CcEEEEE-cCCch-HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecc
Q 007327 10 TTQALFY-NYKQL-PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSS 87 (608)
Q Consensus 10 ~s~avv~-g~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi~vp 87 (608)
++|++|| |..|+ +.++|.+.||. |...| .... ....+ .-.|.....|.+|+... .|.++++||
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~-------v~~~d-~~~~-~~~~~---~~~g~~~~~s~~e~~~~---~dvvi~~v~ 66 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYE-------VTVYD-RSPE-KAEAL---AEAGAEVADSPAEAAEQ---ADVVILCVP 66 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTE-------EEEEE-SSHH-HHHHH---HHTTEEEESSHHHHHHH---BSEEEE-SS
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCe-------EEeec-cchh-hhhhh---HHhhhhhhhhhhhHhhc---ccceEeecc
Confidence 4678885 33344 89999999875 55666 4221 00111 11368889999998763 699999999
Q ss_pred ChhcHHHHHHH---hcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCeEE
Q 007327 88 FRSAAASSMAA---LKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVI 134 (608)
Q Consensus 88 ~~~~~~~~le~---~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~rvl 134 (608)
....+.++++. +....-..++|-++-......+++.+.++++|++++
T Consensus 67 ~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~v 116 (163)
T PF03446_consen 67 DDDAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYV 116 (163)
T ss_dssp SHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEE
T ss_pred cchhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceee
Confidence 98778888886 443445667777777777778888888888888754
No 86
>cd06107 EcCS_AthCS-per_like Escherichia coli (Ec) citrate synthase (CS) gltA and Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the active site. Type II CSs are unique to gram-negative bacteria and are homohexamers of ide
Probab=95.96 E-value=0.039 Score=60.07 Aligned_cols=92 Identities=14% Similarity=0.098 Sum_probs=68.0
Q ss_pred CcchhhhheeccCCC--CcccCCCCCCcccccCCcHHHHHHHhhcCCCCChhHHHHHHHHHHHhcCCCCCCccchhhhhh
Q 007327 349 APTHIISTISDDRGE--EPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVT 426 (608)
Q Consensus 349 ~i~A~~t~I~~~~g~--~i~~~g~dl~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHgl~~st~~aar~~ 426 (608)
.+++..|+||.-.|+ .+.||||++.||..+. +|+++.|+||+|+-|++++.+.+..-|.-+ ..-+.. +..+.
T Consensus 11 ~v~~~~t~Is~iDg~~G~L~YRGy~I~dLa~~~-~feev~yLLl~G~LPt~~el~~f~~~L~~~---~~lp~~--v~~~i 84 (382)
T cd06107 11 NTAVCESSITYIDGDKGILLYRGYPIEQLAESS-TYEEVAYLLLWGELPTQEQYDEFQRRLSEH---MMVPES--VHRLI 84 (382)
T ss_pred CeeeEeeeCeeEeCCCCeEEECCccHHHHHhcC-CHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---cCCCHH--HHHHH
Confidence 455677888877665 4789999999999998 999999999999988888888888766554 333333 23333
Q ss_pred c--cCCCChHHHHHHhhhccCC
Q 007327 427 A--RAGKDLVSSLVSGLLTIGP 446 (608)
Q Consensus 427 a--St~a~~~~av~agl~a~Gp 446 (608)
- ...++|-..+.+++.+++.
T Consensus 85 ~~~p~~~hPM~~L~~~vs~l~~ 106 (382)
T cd06107 85 QTFPRDAHPMGILCAGLSALSA 106 (382)
T ss_pred HhCCCCCCcHHHHHHHHHhhcc
Confidence 2 3346788888888888764
No 87
>PRK14033 citrate synthase; Provisional
Probab=95.94 E-value=0.029 Score=60.99 Aligned_cols=92 Identities=12% Similarity=0.060 Sum_probs=64.9
Q ss_pred CCcchhhhheeccCCC--CcccCCCCCCcccccCCcHHHHHHHhhcCCCCChhHHHHHHHHHHHhcCCCCCCccchhhhh
Q 007327 348 RAPTHIISTISDDRGE--EPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIV 425 (608)
Q Consensus 348 p~i~A~~t~I~~~~g~--~i~~~g~dl~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHgl~~st~~aar~ 425 (608)
..+....|+||...++ .+.|||+|+.||+++. +|++++|+||+|+.|++.+.+.++.-|. .|..-+.. +..+
T Consensus 14 ~gv~v~~S~Is~id~~~g~L~yRG~di~dLa~~~-sfeeva~LL~~G~lP~~~el~~f~~~l~---~~~~~p~~--v~~~ 87 (375)
T PRK14033 14 AGVVVDTTAISKVVPETNSLTYRGYPVQDLAARC-SFEEVAYLLWNGELPTDAELALFSQRER---AYRRLDRS--VLSL 87 (375)
T ss_pred CCceEeeccCeEEECCCCeEEECCccHHHHHhcC-CHHHHHHHHHcCCCCCHHHHHHHHHHHH---HccCCCHH--HHHH
Confidence 4556667788777765 5799999999999988 9999999999998888888888888663 23333333 2222
Q ss_pred hc--cCCCChHHHHHHhhhccC
Q 007327 426 TA--RAGKDLVSSLVSGLLTIG 445 (608)
Q Consensus 426 ~a--St~a~~~~av~agl~a~G 445 (608)
.. -...++-..+.+++.+++
T Consensus 88 ~~~~p~~~~pm~~l~~~vs~l~ 109 (375)
T PRK14033 88 IDKLPTTCHPMDVVRTAVSYLG 109 (375)
T ss_pred HHhCCCCCCHHHHHHHHHHHhc
Confidence 22 234566667777776654
No 88
>cd06110 BSuCS-II_like Bacillus subtilis (Bs) citrate synthase (CS)-II_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains proteins similar to BsCS-II, the major CS of the gram-positive bacterium Bacillus subtilis. A mutation in the gene which encodes BsCS-II (citZ gene) has been described which resulted in a significant loss of CS activity, partial glutamate auxotrophy, and a sporulation deficiency, a
Probab=95.92 E-value=0.0078 Score=64.98 Aligned_cols=91 Identities=13% Similarity=0.086 Sum_probs=65.0
Q ss_pred CcchhhhheeccCCCC--cccCCCCCCcccccCCcHHHHHHHhhcCCCCChhHHHHHHHHHHHhcCCCCCCccchhhhhh
Q 007327 349 APTHIISTISDDRGEE--PCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVT 426 (608)
Q Consensus 349 ~i~A~~t~I~~~~g~~--i~~~g~dl~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHgl~~st~~aar~~ 426 (608)
.+.+..|+||...++. +.|||+|+.||+++. +|++++|+||+|+.|++.+.+.++..|. .|..-+.. +..+.
T Consensus 5 g~~~~~T~IS~id~~~g~L~yRG~di~dL~~~~-~feeva~LL~~G~lP~~~e~~~f~~~l~---~~~~~p~~--v~~~~ 78 (356)
T cd06110 5 GVIAADSKISYIDGDAGILIYRGYDIHDLAENS-TFEEVAYLLWNGELPTAEELDAFKAQLA---AERELPAE--IIDLL 78 (356)
T ss_pred CCeeeeeeceEEECCCCeEEECCeeHHHHHhcC-CHHHHHHHHHcCcCCCHHHHHHHHHhhh---hccCCCHH--HHHHH
Confidence 3455667887777665 689999999999988 9999999999998899888899999873 44443333 22223
Q ss_pred cc--CCCChHHHHHHhhhccC
Q 007327 427 AR--AGKDLVSSLVSGLLTIG 445 (608)
Q Consensus 427 aS--t~a~~~~av~agl~a~G 445 (608)
.+ ..+++-..+.+++++++
T Consensus 79 ~~~p~~~~pm~~l~~~v~~l~ 99 (356)
T cd06110 79 KLLPKDAHPMDVLRTAVSALA 99 (356)
T ss_pred HhCCCCCCchHHHHHHHHhhh
Confidence 23 34566666666666653
No 89
>TIGR01798 cit_synth_I citrate synthase I (hexameric type). This model describes one of several distinct but closely homologous classes of citrate synthase, the protein that brings carbon (from acetyl-CoA) into the TCA cycle. This form, class I, is known to be hexameric and allosterically inhibited by NADH in Escherichia coli, Acinetobacter anitratum, Azotobacter vinelandii, Pseudomonas aeruginosa, etc. In most species with a class I citrate synthase, a dimeric class II isozyme is found. The class II enzyme may act primarily on propionyl-CoA to make 2-methylcitrate or be bifunctional, may be found among propionate utilization enzymes, and may be constitutive or induced by propionate. Some members of this model group as class I enzymes, and may be hexameric, but have shown regulatory properties more like class II enzymes.
Probab=95.91 E-value=0.035 Score=61.02 Aligned_cols=93 Identities=13% Similarity=0.059 Sum_probs=67.1
Q ss_pred cCCcchhhhheeccCCCC--cccCCCCCCcccccCCcHHHHHHHhhcCCCCChhHHHHHHHHHHHhcCCCCCCccchhhh
Q 007327 347 VRAPTHIISTISDDRGEE--PCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTI 424 (608)
Q Consensus 347 ~p~i~A~~t~I~~~~g~~--i~~~g~dl~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHgl~~st~~aar 424 (608)
+..+++..|+||.-.|+. +.||||++.||..+. +|+++.|+||+|+-|++++.+.+..-|.- |..-|.. +..
T Consensus 36 L~~v~~~~s~Is~iDg~~G~L~YRGy~I~dL~~~~-~feEv~yLLl~G~LPt~~el~~f~~~L~~---~~~lp~~--v~~ 109 (412)
T TIGR01798 36 FTSTASCESKITFIDGDKGILLYRGYPIDQLATKS-DYLEVCYLLLNGELPTAEQKDEFDDTVTR---HTMVHEQ--VTR 109 (412)
T ss_pred CCCceeEeeeCeeEeCCCCEEEECCccHHHHhccC-CHHHHHHHHHcCCCCCHHHHHHHHHHHHH---ccCCCHH--HHH
Confidence 345566778888777654 789999999999988 99999999999999998888888887743 3333333 222
Q ss_pred hhccC--CCChHHHHHHhhhccC
Q 007327 425 VTARA--GKDLVSSLVSGLLTIG 445 (608)
Q Consensus 425 ~~aSt--~a~~~~av~agl~a~G 445 (608)
+.-+. ..+|-..+.+++++++
T Consensus 110 ~i~~~p~~~hPM~~L~~~vs~l~ 132 (412)
T TIGR01798 110 FFNGFRRDAHPMAVMVGVVGALS 132 (412)
T ss_pred HHHhCCCcCChHHHHHHHHHHHh
Confidence 22232 2467777777777764
No 90
>PRK14034 citrate synthase; Provisional
Probab=95.64 E-value=0.071 Score=57.89 Aligned_cols=91 Identities=14% Similarity=0.149 Sum_probs=64.8
Q ss_pred CcchhhhheeccCCCCcccCCCCCCcccccCCcHHHHHHHhhcCCCCChhHHHHHHHHHHHhcCCCCCCccchhhhhhcc
Q 007327 349 APTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTAR 428 (608)
Q Consensus 349 ~i~A~~t~I~~~~g~~i~~~g~dl~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHgl~~st~~aar~~aS 428 (608)
.+.+-.|+||.-.++.+.|||+++.||..+. +|+++.|+||+|+-|++++.+-+..-|.-+. .-+-. +..+.-+
T Consensus 9 gv~~~~s~is~i~~~~L~YRGy~i~dLa~~~-~fEeva~LLl~G~lPt~~el~~f~~~L~~~~---~lp~~--v~~~l~~ 82 (372)
T PRK14034 9 GVVATTSSVSSIIDDTLTYVGYNIDDLAENA-SFEEVVYLLWHRKLPNKQELAEFKEQLSENA---KVPGE--IIEHLKQ 82 (372)
T ss_pred CceEeeeEeeccCCCeEEECCccHHHHhccC-CHHHHHHHHHCCCCCCHHHHHHHHHHHHHhc---CCCHH--HHHHHHh
Confidence 4455667788767778999999999999888 9999999999999888888777777665543 22222 2222222
Q ss_pred C---CCChHHHHHHhhhccC
Q 007327 429 A---GKDLVSSLVSGLLTIG 445 (608)
Q Consensus 429 t---~a~~~~av~agl~a~G 445 (608)
- .++|-..+.+++.++|
T Consensus 83 ~p~~~~hpm~~l~~~vs~l~ 102 (372)
T PRK14034 83 YDLKKVHPMSVLRTAISMLG 102 (372)
T ss_pred CCCcCcCHHHHHHHHHHhhc
Confidence 2 2577777777777764
No 91
>PLN02456 citrate synthase
Probab=95.61 E-value=0.053 Score=60.29 Aligned_cols=93 Identities=19% Similarity=0.231 Sum_probs=67.9
Q ss_pred cCCcchhhhheeccCCC--CcccCCCCCCcccccCCcHHHHHHHhhcCCCCChhHHHHHHHHHHHhcCCCCCCccchhhh
Q 007327 347 VRAPTHIISTISDDRGE--EPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTI 424 (608)
Q Consensus 347 ~p~i~A~~t~I~~~~g~--~i~~~g~dl~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHgl~~st~~aar 424 (608)
+..+++..|+||.-.|+ .++||||++.||.++. +|+++.|+||+|+-|+.++.+-++.-| .+|..-+.. +..
T Consensus 68 l~~~~~~~s~IS~iDg~~G~L~YRGy~I~dLa~~~-~feevayLLl~G~LPt~~el~~f~~~L---~~~~~lp~~--v~~ 141 (455)
T PLN02456 68 YRNTAPVLSEISLIDGDEGILRFRGYPIEELAEKS-PFEEVAYLLLYGNLPTKEQLADWEAEL---RQHSAVPEH--VLD 141 (455)
T ss_pred cCCceeeeeeceEEeCCCCEEEECCccHHHHHhcC-CHHHHHHHHHcCcCCCHHHHHHHHHHH---HHhcCCCHH--HHH
Confidence 34555666788777664 4689999999999888 999999999999988888888888866 445544433 233
Q ss_pred hhccC--CCChHHHHHHhhhccC
Q 007327 425 VTARA--GKDLVSSLVSGLLTIG 445 (608)
Q Consensus 425 ~~aSt--~a~~~~av~agl~a~G 445 (608)
+..+- .++|-..+.+++++++
T Consensus 142 ~i~~~p~~~hPM~~L~~~vsal~ 164 (455)
T PLN02456 142 VIDALPHDAHPMTQLVSGVMALS 164 (455)
T ss_pred HHHhCCCcCCcHHHHHHHHHhhh
Confidence 33333 3577778888887765
No 92
>cd06105 ScCit1-2_like Saccharomyces cerevisiae (Sc) citrate synthases Cit1-2_like. Citrate synthases (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) with oxaloacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). Some CS proteins function as 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-neg
Probab=95.55 E-value=0.1 Score=57.53 Aligned_cols=97 Identities=11% Similarity=0.008 Sum_probs=70.7
Q ss_pred hcccCCcchhhhheeccCCCC-cccCCCCCCcccccCCc---------HHHHHHHhhcCCCCChhHHHHHHHHHHHhcCC
Q 007327 344 SGKVRAPTHIISTISDDRGEE-PCYAGVPMSSIVEQGYG---------VGDVISLLWFKRSLPRYCTQFIEICIMLCADH 413 (608)
Q Consensus 344 lA~~p~i~A~~t~I~~~~g~~-i~~~g~dl~~li~~~~~---------~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDH 413 (608)
..-+..+.+..|+||+-.|+. +.||||++.||..+. + |++++|+||+|+-|+.++.+-++.-|.-.
T Consensus 37 ~~Gl~g~~~~~t~iS~iDg~~Gl~YRGy~I~dLa~~~-~~~~~~~~~~fEev~yLLl~G~LPt~~el~~f~~~L~~~--- 112 (427)
T cd06105 37 YGGMRGIKGLVWETSVLDPEEGIRFRGLSIPECQKLL-PKAPGGEEPLPEGLFWLLLTGEVPTKEQVSALSKEWAAR--- 112 (427)
T ss_pred cCCCCCceecceeceeEcCCCCeEECCccHHHHHhhC-cccccccccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---
Confidence 344556667778888776655 899999999998776 5 89999999999999888888888866554
Q ss_pred CCCCccchhhhhhccC--CCChHHHHHHhhhccCC
Q 007327 414 GPCVSGAHNTIVTARA--GKDLVSSLVSGLLTIGP 446 (608)
Q Consensus 414 gl~~st~~aar~~aSt--~a~~~~av~agl~a~Gp 446 (608)
..-|.. +..+.-+. .++|-..+.+++++++.
T Consensus 113 ~~lp~~--v~~~i~~~p~~~hPM~~L~~~vsaL~~ 145 (427)
T cd06105 113 AALPSH--VVTMLDNFPTNLHPMSQLSAAITALNS 145 (427)
T ss_pred CCCCHH--HHHHHHhCCCCCCHHHHHHHHHHhhhc
Confidence 332222 33344333 35788888888888753
No 93
>PRK09569 type I citrate synthase; Reviewed
Probab=95.55 E-value=0.17 Score=56.11 Aligned_cols=97 Identities=14% Similarity=0.054 Sum_probs=68.2
Q ss_pred cccCCcchhhhheeccCCCC-cccCCCCCCcccccC--------CcHHHHHHHhhcCCCCChhHHHHHHHHHHHhcCCCC
Q 007327 345 GKVRAPTHIISTISDDRGEE-PCYAGVPMSSIVEQG--------YGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGP 415 (608)
Q Consensus 345 A~~p~i~A~~t~I~~~~g~~-i~~~g~dl~~li~~~--------~~~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHgl 415 (608)
.=+..+.+..|+||.-.|+. +.||||++.||..+. -+|++++|+||+|+-|++++.+.++.-|.- |..
T Consensus 40 ~GL~gv~~~~t~IS~iDg~~Gl~YRGy~I~dL~~~~p~~~~~~~~~fEev~~LLl~G~LPt~~el~~f~~~L~~---~~~ 116 (437)
T PRK09569 40 GGARDIRSLVTDISYLDPQEGIRFRGKTIPETFEALPKAPGSEYPTVESFWYFLLTGEVPTQEQVQEVVAEWKK---RQN 116 (437)
T ss_pred ccccCCeecceeceeecCCCceeECCccHHHHHhhCccccccCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHH---cCC
Confidence 33556667888888776543 899999999998873 389999999999999988888888887744 333
Q ss_pred CCccchhhhhhccCCCChHHHHHHhhhcc
Q 007327 416 CVSGAHNTIVTARAGKDLVSSLVSGLLTI 444 (608)
Q Consensus 416 ~~st~~aar~~aSt~a~~~~av~agl~a~ 444 (608)
-|..+....-.--..++|-..+.++++++
T Consensus 117 lp~~v~~~i~~~p~~~hPM~~L~~~vs~l 145 (437)
T PRK09569 117 VPQYVIDAIRALPRDSHPMVMLSVGILAM 145 (437)
T ss_pred CCHHHHHHHHhCCCCCCHHHHHHHHHHhc
Confidence 33331222112223367778888888775
No 94
>cd06111 DsCS_like Cold-active citrate synthase (CS) from an Antarctic bacterial strain DS2-3R (Ds)-like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2-methylcitrate synthase (2MCS) catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. DsCS, compared with CS from the hyperthermophile Pyrococcus furiosus (not included in this group), has an increase in the size of surface loops, a higher proline content in the loop regions, a more accessible active site, and a highe
Probab=95.52 E-value=0.016 Score=62.64 Aligned_cols=91 Identities=15% Similarity=0.089 Sum_probs=65.1
Q ss_pred CcchhhhheeccCCC--CcccCCCCCCcccccCCcHHHHHHHhhcCCCCChhHHHHHHHHHHHhcCCCCCCccchhhhhh
Q 007327 349 APTHIISTISDDRGE--EPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVT 426 (608)
Q Consensus 349 ~i~A~~t~I~~~~g~--~i~~~g~dl~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHgl~~st~~aar~~ 426 (608)
.+.+..|+||...++ .+.|||+|+.||+++. +|++++|+||+|+.|++.+.+.++.-| ..|+.-|.. . ..+.
T Consensus 5 gv~~~~s~Is~i~~~~g~L~yRG~di~dLa~~~-~feeva~LL~~G~lP~~~e~~~f~~~l---~~~~~lp~~-~-~~~~ 78 (362)
T cd06111 5 GVVADTTAISKVMPETNSLTYRGYPVQDLAENC-SFEEVAYLLWNGELPNAAQLAEFSQRE---RSYRRLDRN-L-LSLI 78 (362)
T ss_pred CceEecccceEEECCCCeEEECCccHHHHHccC-CHHHHHHHHHCCCCCCHHHHHHHHHHH---HHccCCCHH-H-HHHH
Confidence 345566778776664 5799999999999998 999999999999888888888888866 445544444 1 2222
Q ss_pred c--cCCCChHHHHHHhhhccC
Q 007327 427 A--RAGKDLVSSLVSGLLTIG 445 (608)
Q Consensus 427 a--St~a~~~~av~agl~a~G 445 (608)
. ...+++-..+.+++.+++
T Consensus 79 ~~~p~~~~pm~~l~~~vs~l~ 99 (362)
T cd06111 79 ASLPKNCHPMDVLRTAVSVLG 99 (362)
T ss_pred HhCCCCCChHHHHHHHHHHhh
Confidence 2 234566777777776654
No 95
>PRK11579 putative oxidoreductase; Provisional
Probab=95.45 E-value=0.074 Score=56.98 Aligned_cols=115 Identities=17% Similarity=0.062 Sum_probs=69.9
Q ss_pred CCcEEEEE-cCCch--HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEe
Q 007327 9 KTTQALFY-NYKQL--PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINF 85 (608)
Q Consensus 9 p~s~avv~-g~~~~--~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi~ 85 (608)
+-.++||| |..++ +++.+.... +.++++.++ +.... . .....+.++|.+++|+... +++|+++|+
T Consensus 4 ~irvgiiG~G~i~~~~~~~~~~~~~-----~~~l~av~d-~~~~~-~----~~~~~~~~~~~~~~ell~~-~~vD~V~I~ 71 (346)
T PRK11579 4 KIRVGLIGYGYASKTFHAPLIAGTP-----GLELAAVSS-SDATK-V----KADWPTVTVVSEPQHLFND-PNIDLIVIP 71 (346)
T ss_pred cceEEEECCCHHHHHHHHHHHhhCC-----CCEEEEEEC-CCHHH-H----HhhCCCCceeCCHHHHhcC-CCCCEEEEc
Confidence 45788885 22232 455555432 334555555 42210 0 0123357899999998864 369999999
Q ss_pred ccChhcHHHHHHHhcCCCCCEEEEe-cCCCCHHHHHHHHHHHHhCCCeE-EcCC
Q 007327 86 SSFRSAAASSMAALKQPTIRVVAII-AEGVPEADTKQLIAYARSNNKVV-IGPA 137 (608)
Q Consensus 86 vp~~~~~~~~le~~~~~gv~~~vii-s~Gf~e~~~~~l~~~a~~~g~rv-lGPN 137 (608)
+|...-.+-+++++. +|. .+++= .-.......++|.+.|+++|+.+ +|.|
T Consensus 72 tp~~~H~~~~~~al~-aGk-hVl~EKPla~t~~ea~~l~~~a~~~g~~l~v~~~ 123 (346)
T PRK11579 72 TPNDTHFPLAKAALE-AGK-HVVVDKPFTVTLSQARELDALAKSAGRVLSVFHN 123 (346)
T ss_pred CCcHHHHHHHHHHHH-CCC-eEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEee
Confidence 999875665655554 774 45441 11233346789999999999874 4443
No 96
>cd06117 Ec2MCS_like_1 Subgroup of Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like. 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxalacetate (OAA) to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and OAA to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group contains proteins similar to the E. coli 2MCS, EcPrpC. EcPrpC is one of two CS isozymes in the gram-negative E. coli. EcPrpC is a dimeric (type I ) CS; it is induced during growth on propionate and prefers PrCoA as a substrate, but has a partial CS activity with AcCoA. This group also includes Salmonella typhimurium PrpC and Ralstonia eutropha (Re) 2-MCS1 which are also induced during growth on propionate, prefer PrCoA as substrate, but can also can use AcCoA. Re 2-MCS1 at a low rate can use butyryl-CoA and valeryl-CoA. A second Ralstonia eu
Probab=95.36 E-value=0.02 Score=61.98 Aligned_cols=91 Identities=9% Similarity=0.052 Sum_probs=67.3
Q ss_pred CcchhhhheeccCCC--CcccCCCCCCcccccCCcHHHHHHHhhcCCCCChhHHHHHHHHHHHhcCCCCCCccchhhhhh
Q 007327 349 APTHIISTISDDRGE--EPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVT 426 (608)
Q Consensus 349 ~i~A~~t~I~~~~g~--~i~~~g~dl~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHgl~~st~~aar~~ 426 (608)
.+.+..|+||+..|+ .++||||++.||.++. +|+++.|+||+|+-|++++.+-+..-|.- |..-+.. ...+.
T Consensus 5 gv~~~~T~is~v~~~~g~L~YRGy~i~dLa~~~-~FEeva~LL~~G~lPt~~el~~f~~~L~~---~~~lp~~--v~~~i 78 (366)
T cd06117 5 GVAAGNTALCTVGRSGNDLHYRGYDILDLAEKC-EFEEVAHLLVHGKLPTKSELAAYKTKLKS---LRGLPAN--VKTAL 78 (366)
T ss_pred CeeEecccCeeeecccCEEEECCccHHHHHhcC-CHHHHHHHHHcCCCCCHHHHHHHHHHHHH---ccCCCHH--HHHHH
Confidence 345667888877654 5899999999999988 99999999999999988888888887744 3332222 23334
Q ss_pred ccC--CCChHHHHHHhhhccC
Q 007327 427 ARA--GKDLVSSLVSGLLTIG 445 (608)
Q Consensus 427 aSt--~a~~~~av~agl~a~G 445 (608)
.+- .++|-..+.+++++++
T Consensus 79 ~~~p~~~hpm~~l~~~vs~l~ 99 (366)
T cd06117 79 EQLPAAAHPMDVMRTGVSVLG 99 (366)
T ss_pred HhCCccCCHHHHHHHHHhhhc
Confidence 333 3678888888888875
No 97
>cd06106 ScCit3_like Saccharomyces cerevisiae (Sc) 2-methylcitrate synthase Cit3-like. 2-methylcitrate synthase (2MCS) catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxaloacetate (OAA) to form 2-methylcitrate and CoA. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) with OAA to form citrate and CoA, the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the a
Probab=95.29 E-value=0.13 Score=56.84 Aligned_cols=98 Identities=11% Similarity=0.011 Sum_probs=71.9
Q ss_pred HhcccCCcchhhhheeccCCCC-cccCCCCCCccccc-------CCcH--HHHHHHhhcCCCCChhHHHHHHHHHHHhcC
Q 007327 343 KSGKVRAPTHIISTISDDRGEE-PCYAGVPMSSIVEQ-------GYGV--GDVISLLWFKRSLPRYCTQFIEICIMLCAD 412 (608)
Q Consensus 343 llA~~p~i~A~~t~I~~~~g~~-i~~~g~dl~~li~~-------~~~~--~~~l~~l~~~~~~~~~~~~~l~~~lvl~aD 412 (608)
++.=+..+.+..|.+|+-.|+. +.||||++.||..+ . +| +++.|+||+|+-|++++.+-+..-|.-+.
T Consensus 36 ~~~GL~gv~~~~t~is~idg~~Gl~YRGy~I~dLa~~~~~~~~~~-~f~~Eev~yLLl~G~LPt~~el~~f~~~L~~~~- 113 (428)
T cd06106 36 VLGGMRGLKSMLWEGSVLDAEEGIRFHGKTIPECQKELPKAPIGG-EMLPESMLWLLLTGKVPTFEQARGLSKELAERG- 113 (428)
T ss_pred hcccccCCeeeeecCeEECCCCCeeECCCcHHHHHhhCccccccC-CccHHHHHHHHHcCcCCCHHHHHHHHHHHHHcC-
Confidence 4455777888888888776544 89999999999887 4 66 89999999999999888888888665543
Q ss_pred CCCCCccchhhhhhc--cCCCChHHHHHHhhhccCC
Q 007327 413 HGPCVSGAHNTIVTA--RAGKDLVSSLVSGLLTIGP 446 (608)
Q Consensus 413 Hgl~~st~~aar~~a--St~a~~~~av~agl~a~Gp 446 (608)
.+. .. +..+.- ...++|-..+.+++++++.
T Consensus 114 -~lp-~~--v~~~i~~~p~~~hPM~~L~~~vs~L~~ 145 (428)
T cd06106 114 -KLP-HY--IEKLLDSLPKTLHPMTQLSIGVAALNH 145 (428)
T ss_pred -CCC-HH--HHHHHHhCCCCCCHHHHHHHHHHhccc
Confidence 222 22 233333 3346888889999888864
No 98
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=94.83 E-value=0.096 Score=56.33 Aligned_cols=112 Identities=14% Similarity=0.139 Sum_probs=67.6
Q ss_pred CCCcEEEEEc-CCchHHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEec
Q 007327 8 SKTTQALFYN-YKQLPIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFS 86 (608)
Q Consensus 8 ~p~s~avv~g-~~~~~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi~v 86 (608)
.|..++|||. ++..+++.+.+.. .+.++++.++ +... +...+ .+-+|+|.|.|++|++. ++|+++|++
T Consensus 2 ~~~rVgViG~~~G~~h~~al~~~~----~~~eLvaV~d-~~~e-rA~~~--A~~~gi~~y~~~eell~---d~Di~~V~i 70 (343)
T TIGR01761 2 DVQSVVVCGTRFGQFYLAAFAAAP----ERFELAGILA-QGSE-RSRAL--AHRLGVPLYCEVEELPD---DIDIACVVV 70 (343)
T ss_pred CCcEEEEEeHHHHHHHHHHHHhCC----CCcEEEEEEc-CCHH-HHHHH--HHHhCCCccCCHHHHhc---CCCEEEEEe
Confidence 4667888863 4333676666542 0234666665 5222 11111 23468899999999875 467777777
Q ss_pred cC----hhcHHHHHHHhcCCCCCEEEEecCC-CCHHHHHHHHHHHHhCCCeEE
Q 007327 87 SF----RSAAASSMAALKQPTIRVVAIIAEG-VPEADTKQLIAYARSNNKVVI 134 (608)
Q Consensus 87 p~----~~~~~~~le~~~~~gv~~~viis~G-f~e~~~~~l~~~a~~~g~rvl 134 (608)
|. ..-.+.+++ |.++|+. +++ +- +...+.++|++.|+++|+.+.
T Consensus 71 pt~~P~~~H~e~a~~-aL~aGkH-VL~--EKPla~~Ea~el~~~A~~~g~~l~ 119 (343)
T TIGR01761 71 RSAIVGGQGSALARA-LLARGIH-VLQ--EHPLHPRDIQDLLRLAERQGRRYL 119 (343)
T ss_pred CCCCCCccHHHHHHH-HHhCCCe-EEE--cCCCCHHHHHHHHHHHHHcCCEEE
Confidence 53 232444544 4457853 444 21 234567899999999999866
No 99
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=94.63 E-value=0.07 Score=54.13 Aligned_cols=78 Identities=15% Similarity=0.235 Sum_probs=56.2
Q ss_pred eecccccCCHHHHhhcCCCccEEEEeccChhcHHHHHHHhcCCCCCEEEEecCC-CCH-HHHHHHHHHHHhCCCe-EEcC
Q 007327 60 EIAIPVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEG-VPE-ADTKQLIAYARSNNKV-VIGP 136 (608)
Q Consensus 60 v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~~~~le~~~~~gv~~~viis~G-f~e-~~~~~l~~~a~~~g~r-vlGP 136 (608)
-+|.++|.+++|+... ++|++++|.|.....+-+.+ +-++|...+ |.+-| +.+ ...++|.+.|+++|.+ .+++
T Consensus 21 ~~g~~~~~d~~eLl~~--~vDaVviatp~~~H~e~a~~-aL~aGkhVl-~~s~gAlad~e~~~~l~~aA~~~g~~l~i~s 96 (229)
T TIGR03855 21 RCGAKIVSDFDEFLPE--DVDIVVEAASQEAVKEYAEK-ILKNGKDLL-IMSVGALADRELRERLREVARSSGRKVYIPS 96 (229)
T ss_pred HhCCceECCHHHHhcC--CCCEEEECCChHHHHHHHHH-HHHCCCCEE-EECCcccCCHHHHHHHHHHHHhcCCEEEECh
Confidence 4567899999998652 58999999999875544544 545886644 45654 543 5788999999999987 5666
Q ss_pred Ccccc
Q 007327 137 ATVGG 141 (608)
Q Consensus 137 Nc~Gi 141 (608)
+-+|.
T Consensus 97 Gai~g 101 (229)
T TIGR03855 97 GAIGG 101 (229)
T ss_pred HHHHH
Confidence 54444
No 100
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=94.62 E-value=0.14 Score=54.11 Aligned_cols=117 Identities=17% Similarity=0.147 Sum_probs=74.2
Q ss_pred CCCcEEEEE-c-CCch-HHHHHhhCcccCCCC-CCcEEEEeCCCCCCccccccCceeecc-cccCCHHHHhhcCCCccEE
Q 007327 8 SKTTQALFY-N-YKQL-PIQRMLDFDFLCGRE-TPSVAGIINPGAEGFQKLFFGQEEIAI-PVHSTVEAACAAHPMADVF 82 (608)
Q Consensus 8 ~p~s~avv~-g-~~~~-~~~~l~~~~~~~~~g-~~~v~~v~~p~~~~~~~~~~g~ev~G~-~~y~sv~~i~~~~p~vDla 82 (608)
.+..++||| | +.++ ++..+.+.+ + ..+++.++ +.... .+.+ .+-+|+ ++|.|+++++... +||++
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~-----~~~~~vav~d-~~~~~-a~~~--a~~~~~~~~~~~~~~ll~~~-~iD~V 71 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALG-----GGLELVAVVD-RDPER-AEAF--AEEFGIAKAYTDLEELLADP-DIDAV 71 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCC-----CceEEEEEec-CCHHH-HHHH--HHHcCCCcccCCHHHHhcCC-CCCEE
Confidence 456789996 3 4444 666776653 2 13555544 42220 0011 244666 4999999988753 69999
Q ss_pred EEeccChhcHHHHHHHhcCCCCCEEEEecC---CCCHHHHHHHHHHHHhCCCe-EEcCCc
Q 007327 83 INFSSFRSAAASSMAALKQPTIRVVAIIAE---GVPEADTKQLIAYARSNNKV-VIGPAT 138 (608)
Q Consensus 83 vi~vp~~~~~~~~le~~~~~gv~~~viis~---Gf~e~~~~~l~~~a~~~g~r-vlGPNc 138 (608)
+|++|...-.+-+++++. +|.. ++ .+ .....+-++|++.|+++|.. .+|-|.
T Consensus 72 ~Iatp~~~H~e~~~~AL~-aGkh-Vl--~EKPla~t~~ea~~l~~~a~~~~~~l~v~~~~ 127 (342)
T COG0673 72 YIATPNALHAELALAALE-AGKH-VL--CEKPLALTLEEAEELVELARKAGVKLMVGFNR 127 (342)
T ss_pred EEcCCChhhHHHHHHHHh-cCCE-EE--EcCCCCCCHHHHHHHHHHHHHcCCceeeehhh
Confidence 999999887777766665 6763 33 33 12223567899999999865 666654
No 101
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=94.37 E-value=0.15 Score=49.81 Aligned_cols=90 Identities=12% Similarity=0.096 Sum_probs=61.9
Q ss_pred cEEEEEcCCchHHHHHhhCcccCCCCCCcEEEEeC-CCCCCccccccCceeecccccCCHHHHh---hcCCCccEEEEec
Q 007327 11 TQALFYNYKQLPIQRMLDFDFLCGRETPSVAGIIN-PGAEGFQKLFFGQEEIAIPVHSTVEAAC---AAHPMADVFINFS 86 (608)
Q Consensus 11 s~avv~g~~~~~~~~l~~~~~~~~~g~~~v~~v~~-p~~~~~~~~~~g~ev~G~~~y~sv~~i~---~~~p~vDlavi~v 86 (608)
.++|| |. |++-+.++.|.|.-..++.++++.+- |. .-|.++.++|+|. ++++- ... ++|.++++|
T Consensus 86 nviiV-G~-GnlG~All~Y~f~~~~~~~iv~~FDv~~~-------~VG~~~~~v~V~~-~d~le~~v~~~-dv~iaiLtV 154 (211)
T COG2344 86 NVIIV-GV-GNLGRALLNYNFSKKNGMKIVAAFDVDPD-------KVGTKIGDVPVYD-LDDLEKFVKKN-DVEIAILTV 154 (211)
T ss_pred eEEEE-cc-ChHHHHHhcCcchhhcCceEEEEecCCHH-------HhCcccCCeeeec-hHHHHHHHHhc-CccEEEEEc
Confidence 34555 55 33556666666543345567766541 22 2357899999994 56543 334 599999999
Q ss_pred cChhcHHHHHHHhcCCCCCEEEEecC
Q 007327 87 SFRSAAASSMAALKQPTIRVVAIIAE 112 (608)
Q Consensus 87 p~~~~~~~~le~~~~~gv~~~viis~ 112 (608)
|+.. ...+.+.+.++|||++.=+|.
T Consensus 155 Pa~~-AQ~vad~Lv~aGVkGIlNFtP 179 (211)
T COG2344 155 PAEH-AQEVADRLVKAGVKGILNFTP 179 (211)
T ss_pred cHHH-HHHHHHHHHHcCCceEEeccc
Confidence 9986 788889999999999988875
No 102
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=94.33 E-value=0.23 Score=52.21 Aligned_cols=113 Identities=12% Similarity=0.015 Sum_probs=68.3
Q ss_pred CcEEEEE-cCCch-HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecc
Q 007327 10 TTQALFY-NYKQL-PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSS 87 (608)
Q Consensus 10 ~s~avv~-g~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi~vp 87 (608)
++|++|| |..|. +.++|.+.||. |...+ +.... ...+ .-.|...+.+.+|+.....+.|++++++|
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~-------v~v~d-r~~~~-~~~~---~~~g~~~~~~~~e~~~~~~~~dvvi~~v~ 68 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHE-------VVGYD-RNPEA-VEAL---AEEGATGADSLEELVAKLPAPRVVWLMVP 68 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCe-------EEEEE-CCHHH-HHHH---HHCCCeecCCHHHHHhhcCCCCEEEEEec
Confidence 3588885 44444 88999998753 44555 42210 0111 11467788899987653212599999999
Q ss_pred ChhcHHHHHHHhcCC-CCCEEEEecCCCCHHHHHHHHHHHHhCCCeEE
Q 007327 88 FRSAAASSMAALKQP-TIRVVAIIAEGVPEADTKQLIAYARSNNKVVI 134 (608)
Q Consensus 88 ~~~~~~~~le~~~~~-gv~~~viis~Gf~e~~~~~l~~~a~~~g~rvl 134 (608)
....+.++++.+... .-+.++|-++.......+++.+.+++.|++++
T Consensus 69 ~~~~~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~ 116 (301)
T PRK09599 69 AGEITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFV 116 (301)
T ss_pred CCcHHHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEE
Confidence 975566776655421 12334444444444456667788888888765
No 103
>TIGR01793 cit_synth_euk citrate (Si)-synthase, eukaryotic. This model includes both mitochondrial and peroxisomal forms of citrate synthase. Citrate synthase is the entry point to the TCA cycle from acetyl-CoA. Peroxisomal forms, such as SP:P08679 from yeast (recognized by the C-terminal targeting motif SKL) act in the glyoxylate cycle. Eukaryotic homologs excluded by the high trusted cutoff of this model include a Tetrahymena thermophila citrate synthase that doubles as a filament protein, a putative citrate synthase from Plasmodium falciparum (no TCA cycle), and a methylcitrate synthase from Aspergillus nidulans.
Probab=94.17 E-value=0.071 Score=58.80 Aligned_cols=97 Identities=8% Similarity=0.025 Sum_probs=71.3
Q ss_pred hcccCCcchhhhheeccCCCC-cccCCCCCCcc---cccCCc------HHHHHHHhhcCCCCChhHHHHHHHHHHHhcCC
Q 007327 344 SGKVRAPTHIISTISDDRGEE-PCYAGVPMSSI---VEQGYG------VGDVISLLWFKRSLPRYCTQFIEICIMLCADH 413 (608)
Q Consensus 344 lA~~p~i~A~~t~I~~~~g~~-i~~~g~dl~~l---i~~~~~------~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDH 413 (608)
+.=+..+....|.||.-+|+. +.||||++.|| +.+. + |++++|+||+|+-|++++.+-+..-|.- |
T Consensus 40 ~~Glrgv~~~~t~iS~iD~~~Gl~yRGy~I~dl~~~~~~~-~~~~~~~fEev~~LLl~G~lPt~~el~~f~~~L~~---~ 115 (427)
T TIGR01793 40 YGGMRGMKGLVWETSVLDPEEGIRFRGLSIPECQKLLPKA-KGGEEPLPEGLLWLLLTGKVPSEEQVDALSAEWRA---R 115 (427)
T ss_pred cCccCCCcccceeceEEcCCCCeEECCeeHHHHHHHhccC-CccccCCHHHHHHHHHcCCCCCHHHHHHHHHHHHH---c
Confidence 455677778888888776653 89999999986 5565 6 9999999999999999888888887744 3
Q ss_pred CCCCccchhhhhhccCC--CChHHHHHHhhhccCC
Q 007327 414 GPCVSGAHNTIVTARAG--KDLVSSLVSGLLTIGP 446 (608)
Q Consensus 414 gl~~st~~aar~~aSt~--a~~~~av~agl~a~Gp 446 (608)
+.-|.. +..+.-+-. .+|-..+.+++++++.
T Consensus 116 ~~lp~~--v~~~i~~~p~~~hPM~~L~~~vsaL~~ 148 (427)
T TIGR01793 116 ADLPEH--VYKTIDALPVTLHPMAQFATAVMALQV 148 (427)
T ss_pred CCCCHH--HHHHHHhCCCCCCHHHHHHHHHHhccc
Confidence 333333 333444433 5788888888888753
No 104
>cd06103 ScCS-like Saccharomyces cerevisiae (Sc) citrate synthase (CS)-like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) with oxaloacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). Some CS proteins function as 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homo
Probab=94.08 E-value=0.074 Score=58.71 Aligned_cols=97 Identities=10% Similarity=0.022 Sum_probs=70.8
Q ss_pred cccCCcchhhhheeccCCC-CcccCCCCCCcccccCC--------cHHHHHHHhhcCCCCChhHHHHHHHHHHHhcCCCC
Q 007327 345 GKVRAPTHIISTISDDRGE-EPCYAGVPMSSIVEQGY--------GVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGP 415 (608)
Q Consensus 345 A~~p~i~A~~t~I~~~~g~-~i~~~g~dl~~li~~~~--------~~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHgl 415 (608)
.=+..+.+..|+||+-.|+ .+.||||++.||..+.- +|+++.|+||+|+-|++++.+.++.-|. .|..
T Consensus 38 ~GL~gv~~~~t~Is~iDg~~Gl~YRGy~I~dLa~~~~~~~~~~~~~fEev~yLLl~G~LPt~~el~~f~~~L~---~~~~ 114 (426)
T cd06103 38 GGMRGMKGLVYETSVLDPDEGIRFRGKTIPECQELLPKADGGGEPLPEGLFWLLLTGEVPTEEQVDELSKEWA---KRAE 114 (426)
T ss_pred cCcCCCeeeeeeCeeEcCCCCeEECCccHHHHHhhCccccccCcCcHHHHHHHHHCCCCCCHHHHHHHHHHHH---HcCC
Confidence 3455667778888877664 47899999999998751 2999999999999999888888888776 3443
Q ss_pred CCccchhhhhhccC--CCChHHHHHHhhhccCC
Q 007327 416 CVSGAHNTIVTARA--GKDLVSSLVSGLLTIGP 446 (608)
Q Consensus 416 ~~st~~aar~~aSt--~a~~~~av~agl~a~Gp 446 (608)
- +. .+..+.-+- .++|-..+.+++++++.
T Consensus 115 l-p~-~v~~~i~~~p~~~hPM~~L~~~vs~L~~ 145 (426)
T cd06103 115 V-PS-HVVKMIDNLPRNLHPMTQLSAAILALQS 145 (426)
T ss_pred C-CH-HHHHHHHhCCCCCChHHHHHHHHHhccc
Confidence 2 33 233344333 35788899999988764
No 105
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=93.99 E-value=0.44 Score=53.71 Aligned_cols=118 Identities=9% Similarity=-0.079 Sum_probs=73.8
Q ss_pred cEEEEE-cCCch-HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccC-ceeecc---cccCCHHHHhhcCCCccEEEE
Q 007327 11 TQALFY-NYKQL-PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFG-QEEIAI---PVHSTVEAACAAHPMADVFIN 84 (608)
Q Consensus 11 s~avv~-g~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g-~ev~G~---~~y~sv~~i~~~~p~vDlavi 84 (608)
.|.+|| |..|. ..+||++.||. |...| .... +...+.. ....|. ..+.|++|+......+|.+++
T Consensus 8 ~IG~IGLG~MG~~mA~nL~~~G~~-------V~V~N-Rt~~-k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~ 78 (493)
T PLN02350 8 RIGLAGLAVMGQNLALNIAEKGFP-------ISVYN-RTTS-KVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVII 78 (493)
T ss_pred CEEEEeeHHHHHHHHHHHHhCCCe-------EEEEC-CCHH-HHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEE
Confidence 589996 54454 99999999875 44555 3221 1111110 000132 367899998753223799999
Q ss_pred eccChhcHHHHHHHhcCC-CCCEEEEecCCCCHHHHHHHHHHHHhCCCeEEcCC
Q 007327 85 FSSFRSAAASSMAALKQP-TIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPA 137 (608)
Q Consensus 85 ~vp~~~~~~~~le~~~~~-gv~~~viis~Gf~e~~~~~l~~~a~~~g~rvlGPN 137 (608)
+||....++++++.+... .-..++|-.+-....+.+++.+.++++|+++++--
T Consensus 79 ~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldap 132 (493)
T PLN02350 79 LVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMG 132 (493)
T ss_pred ECCCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCC
Confidence 999998888887654422 22334444444444567777888889999988763
No 106
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=93.77 E-value=0.35 Score=50.78 Aligned_cols=111 Identities=9% Similarity=-0.030 Sum_probs=68.9
Q ss_pred cEEEEE-cCCch-HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEeccC
Q 007327 11 TQALFY-NYKQL-PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSF 88 (608)
Q Consensus 11 s~avv~-g~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi~vp~ 88 (608)
+|.+|| |..|. ..+++.+.||. |...+ .... ....+ .-.|..++.+++++.......|++++++|.
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~-------v~v~d-r~~~-~~~~~---~~~g~~~~~s~~~~~~~~~~advVi~~vp~ 69 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHE-------VVGYD-VNQE-AVDVA---GKLGITARHSLEELVSKLEAPRTIWVMVPA 69 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCE-------EEEEE-CCHH-HHHHH---HHCCCeecCCHHHHHHhCCCCCEEEEEecC
Confidence 578885 33333 88899988753 33445 3211 00111 114678889999876532125999999999
Q ss_pred hhcHHHHHHHhcCC-CCCEEEEecCCCCHHHHHHHHHHHHhCCCeE
Q 007327 89 RSAAASSMAALKQP-TIRVVAIIAEGVPEADTKQLIAYARSNNKVV 133 (608)
Q Consensus 89 ~~~~~~~le~~~~~-gv~~~viis~Gf~e~~~~~l~~~a~~~g~rv 133 (608)
...+..+++.+... .-+.++|-++.......+++.+.++++|+++
T Consensus 70 ~~~~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~ 115 (299)
T PRK12490 70 GEVTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHY 115 (299)
T ss_pred chHHHHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeE
Confidence 85577777766532 2235666666665566777777787777653
No 107
>PLN02235 ATP citrate (pro-S)-lyase
Probab=93.64 E-value=0.56 Score=51.58 Aligned_cols=129 Identities=12% Similarity=0.074 Sum_probs=93.1
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhcCC--ceeEEeecCCCCCCCCCHHHHHHHhh----cCCCccEEEEEEecCCcc---
Q 007327 166 RPGSVGFVSKSGGMSNELYNTIARVTD--GIYEGIAIGGDVFPGSTLSDHILRFN----NIPQVKMMVVLGELGGRD--- 236 (608)
Q Consensus 166 ~~G~valvSQSG~l~~~~~~~~~~~g~--G~s~~vs~Gn~~~~dv~~~d~l~~l~----~Dp~T~~I~ly~E~g~~~--- 236 (608)
..|+|+.+.--|+++.+.+|.....|. -...|.-+|+.+ +.-.+.+++.-+. .||++|+|++-+=-|+.+
T Consensus 268 ldG~Ig~mvnGAGlamaTmD~I~~~G~~g~pANFlDvGG~a-~~e~v~~a~~iil~~~~~~~~vk~ilvnIfGGI~rcd~ 346 (423)
T PLN02235 268 PKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAP-NEEEVLQYARVVIDCATANPDGRKRALLIGGGIANFTD 346 (423)
T ss_pred CCCeEEEEecCcHHHHHHHHHHHHcCCCCCCceeeecCCCC-CHHHHHHHHHHHHhhhhcCCCCcEEEEEEecccccchh
Confidence 469999999999999999999999884 599999999986 2556677777776 799999998887734443
Q ss_pred -H---HHHHHHHHhCC-----CCCCEEEEEeCCCccCcccccccCCCCCcCCCCcchHHHHHHHHHHcC--CcccCCHHH
Q 007327 237 -E---YSLVEALKQGK-----VNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAG--AVVPTSYEA 305 (608)
Q Consensus 237 -~---~~f~~~~r~a~-----~~KPVvvlk~Grs~~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaG--vi~v~~~~e 305 (608)
. +-..+++++.. .++|||+-..|.+..- + - +..+.++++.| +...+.-.+
T Consensus 347 VA~tf~GIi~A~~e~~~kl~~~~vpivVRl~GtN~ee-------G--------~----~il~e~~~~~gl~i~~~~~~~~ 407 (423)
T PLN02235 347 VAATFNGIIRALREKESKLKAARMHIFVRRGGPNYQK-------G--------L----AKMRALGEEIGVPIEVYGPEAT 407 (423)
T ss_pred hhhhhhHHHHHHHHhhhccccCCccEEEECCCCCHHH-------H--------H----HHHHHhHHhcCCcEEEeCCCCC
Confidence 2 45567777653 4689999888877652 1 1 45556667999 666662224
Q ss_pred HHHHHHHHH
Q 007327 306 FESAIKETF 314 (608)
Q Consensus 306 l~~~~~~~~ 314 (608)
|.++++...
T Consensus 408 m~~a~~~av 416 (423)
T PLN02235 408 MTGICKQAI 416 (423)
T ss_pred HHHHHHHHH
Confidence 444554433
No 108
>cd06114 EcCS_like Escherichia coli (Ec) citrate synthase (CS) GltA_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the active site. Type II CSs are unique to gram-negative bacteria and are homohexamers of identical subunits (approximated as a trimer of dimers). Some typ
Probab=93.53 E-value=0.084 Score=57.89 Aligned_cols=92 Identities=16% Similarity=0.066 Sum_probs=64.6
Q ss_pred CCcchhhhheeccCCC--CcccCCCCCCcccccCCcHHHHHHHhhcCCCCChhHHHHHHHHHHHhcCCCCCCccchhhhh
Q 007327 348 RAPTHIISTISDDRGE--EPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIV 425 (608)
Q Consensus 348 p~i~A~~t~I~~~~g~--~i~~~g~dl~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHgl~~st~~aar~ 425 (608)
..+.+..|+||.-.|+ .++|||+|+.||.++. +|+++.|+||+|+-|++++.+-+..-|.- |..-|.. +..+
T Consensus 32 ~gv~v~~S~Is~idg~~G~L~YRGy~i~dLa~~~-sfEEva~LL~~G~lP~~~el~~f~~~L~~---~~~lp~~--v~~~ 105 (400)
T cd06114 32 MNTASCESAITYIDGEKGILRYRGYPIEQLAEKS-SFLEVCYLLLYGELPTAEQLQEFREEITR---HTLVHEQ--MKRF 105 (400)
T ss_pred CCceeEeeeCeEEeCCCCEEEECCccHHHHHhcC-CHHHHHHHHHcCcCCCHHHHHHHHHHHHH---ccCCCHH--HHHH
Confidence 3445666778777654 5789999999999998 99999999999988888777777776643 3322333 2223
Q ss_pred hccC--CCChHHHHHHhhhccC
Q 007327 426 TARA--GKDLVSSLVSGLLTIG 445 (608)
Q Consensus 426 ~aSt--~a~~~~av~agl~a~G 445 (608)
..+. ..++-..+.+++.+++
T Consensus 106 i~~~p~~~~pm~~l~~~vs~l~ 127 (400)
T cd06114 106 FNGFPRDAHPMAILSAMVNALS 127 (400)
T ss_pred HHhcccCCCHHHHHHHHHHHHh
Confidence 3333 3677777777777764
No 109
>PRK05614 gltA type II citrate synthase; Reviewed
Probab=93.52 E-value=0.082 Score=58.26 Aligned_cols=91 Identities=13% Similarity=0.093 Sum_probs=64.6
Q ss_pred CcchhhhheeccCCC--CcccCCCCCCcccccCCcHHHHHHHhhcCCCCChhHHHHHHHHHHHhcCCCCCCccchhhhhh
Q 007327 349 APTHIISTISDDRGE--EPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVT 426 (608)
Q Consensus 349 ~i~A~~t~I~~~~g~--~i~~~g~dl~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHgl~~st~~aar~~ 426 (608)
.+++..|+||.-.|+ .+.|||+++.||.++. +|+++.|+||+|+-|++++.+.++.-|. .|..-+.. ...+.
T Consensus 51 ~~~~~~S~Is~iDg~~G~L~YRGy~i~dLa~~~-~feEva~LLl~G~LP~~~el~~f~~~L~---~~~~lp~~--v~~~i 124 (419)
T PRK05614 51 STASCESKITYIDGDKGILLYRGYPIEQLAEKS-DFLEVCYLLLYGELPTAEQKAEFDTTVT---RHTMVHEQ--LKRFF 124 (419)
T ss_pred CceeeeeeceeEeCCCCEEEECCccHHHHHhcC-CHHHHHHHHHcCcCCCHHHHHHHHHhHh---hccCCCHH--HHHHH
Confidence 444556677766654 5789999999999998 9999999999998888888888877653 34443333 22233
Q ss_pred ccC--CCChHHHHHHhhhccC
Q 007327 427 ARA--GKDLVSSLVSGLLTIG 445 (608)
Q Consensus 427 aSt--~a~~~~av~agl~a~G 445 (608)
-+. .++|-..+.+++.+++
T Consensus 125 ~~~p~~~hPM~~L~~~vs~l~ 145 (419)
T PRK05614 125 RGFRRDAHPMAVLCGVVGALS 145 (419)
T ss_pred HhcCCCCCHHHHHHHHHHHHh
Confidence 333 4677777777777764
No 110
>PF00285 Citrate_synt: Citrate synthase; InterPro: IPR002020 Citrate synthase 2.3.3.1 from EC is a member of a small family of enzymes that can directly form a carbon-carbon bond without the presence of metal ion cofactors. It catalyses the first reaction in the Krebs' cycle, namely the conversion of oxaloacetate and acetyl-coenzyme A into citrate and coenzyme A. This reaction is important for energy generation and for carbon assimilation. The reaction proceeds via a non-covalently bound citryl-coenzyme A intermediate in a 2-step process (aldol-Claisen condensation followed by the hydrolysis of citryl-CoA). Citrate synthase enzymes are found in two distinct structural types: type I enzymes (found in eukaryotes, Gram-positive bacteria and archaea) form homodimers and have shorter sequences than type II enzymes, which are found in Gram-negative bacteria and are hexameric in structure. In both types, the monomer is composed of two domains: a large alpha-helical domain consisting of two structural repeats, where the second repeat is interrupted by a small alpha-helical domain. The cleft between these domains forms the active site, where both citrate and acetyl-coenzyme A bind. The enzyme undergoes a conformational change upon binding of the oxaloacetate ligand, whereby the active site cleft closes over in order to form the acetyl-CoA binding site []. The energy required for domain closure comes from the interaction of the enzyme with the substrate. Type II enzymes possess an extra N-terminal beta-sheet domain, and some type II enzymes are allosterically inhibited by NADH []. This entry represents types I and II citrate synthase enzymes, as well as the related enzymes 2-methylcitrate synthase and ATP citrate synthase. 2-methylcitrate (2.3.3.5 from EC) synthase catalyses the conversion of oxaloacetate and propanoyl-CoA into (2R,3S)-2-hydroxybutane-1,2,3-tricarboxylate and coenzyme A. This enzyme is induced during bacterial growth on propionate, while type II hexameric citrate synthase is constitutive []. ATP citrate synthase (2.3.3.8 from EC) (also known as ATP citrate lyase) catalyses the MgATP-dependent, CoA-dependent cleavage of citrate into oxaloacetate and acetyl-CoA, a key step in the reductive tricarboxylic acid pathway of CO2 assimilation used by a variety of autotrophic bacteria and archaea to fix carbon dioxide []. ATP citrate synthase is composed of two distinct subunits. In eukaryotes, ATP citrate synthase is a homotetramer of a single large polypeptide, and is used to produce cytosolic acetyl-CoA from mitochondrial produced citrate [].; GO: 0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer, 0044262 cellular carbohydrate metabolic process; PDB: 2C6X_D 3L96_B 1OWB_B 1NXG_A 1K3P_A 1OWC_B 3L97_B 1NXE_A 3L98_A 3L99_A ....
Probab=93.29 E-value=0.031 Score=60.34 Aligned_cols=90 Identities=14% Similarity=0.132 Sum_probs=62.6
Q ss_pred CcchhhhheeccCCCC--cccCCCCCCcccccCCcHHHHHHHhhcCCCCChhHHHHHHHHHHHhcCCCCCCccchhhhhh
Q 007327 349 APTHIISTISDDRGEE--PCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVT 426 (608)
Q Consensus 349 ~i~A~~t~I~~~~g~~--i~~~g~dl~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHgl~~st~~aar~~ 426 (608)
.+.+..|+||.-.++. +.|||+++.||+++. +|+++.|+||+|+-|++++.+.++..|.-. . ..+- .+.++.
T Consensus 4 gv~v~~T~Is~id~~~G~L~YRGy~i~dL~~~~-sfeeva~LL~~g~lP~~~el~~f~~~l~~~---~-~lpe-~v~~~i 77 (356)
T PF00285_consen 4 GVPVCETSISFIDGEKGILRYRGYDIEDLAENA-SFEEVAYLLWYGELPTAEELEEFSAELKER---R-ALPE-EVIEVI 77 (356)
T ss_dssp TEEEEEESSEEEETTTTEEEETTEEHHHHHHHS-BHHHHHHHHHHSS--BHHHHHHHHHHHHCT---T-S--H-HHHHHH
T ss_pred CCeEeeeeCeEEeCCCCEEEEcCeEHHHHHhcC-CHHHHHHHHHhccCCChhhhccchhHHHhh---c-chhH-HHHHHH
Confidence 3455677888776665 999999999999977 999999999999988888888888876632 2 2233 334455
Q ss_pred ccC--CCChHHHHHHhhhcc
Q 007327 427 ARA--GKDLVSSLVSGLLTI 444 (608)
Q Consensus 427 aSt--~a~~~~av~agl~a~ 444 (608)
.+- .++|-..+.+++.++
T Consensus 78 ~~lp~~~~pm~~L~~~vs~l 97 (356)
T PF00285_consen 78 EALPRDAHPMDVLRAAVSAL 97 (356)
T ss_dssp HCSTTTS-HHHHHHHHHHHH
T ss_pred hhcCCCCCchHHHHHHHhhh
Confidence 443 356777777777665
No 111
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=93.29 E-value=0.46 Score=49.81 Aligned_cols=116 Identities=16% Similarity=0.091 Sum_probs=79.3
Q ss_pred CcEEEEE-cCCch-HHHHHhhCcccCCCCCCcEEEEeC-CCC-CCccccccCceeecccccCCHHHHhhcCCCccEEEEe
Q 007327 10 TTQALFY-NYKQL-PIQRMLDFDFLCGRETPSVAGIIN-PGA-EGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINF 85 (608)
Q Consensus 10 ~s~avv~-g~~~~-~~~~l~~~~~~~~~g~~~v~~v~~-p~~-~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi~ 85 (608)
++|++|| |..|. ..+||++-||. |...|- |.+ ..+ -.-.|...+.|..|+.. +.|+++.+
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~-------v~v~~r~~~ka~~~------~~~~Ga~~a~s~~eaa~---~aDvVitm 64 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHE-------VTVYNRTPEKAAEL------LAAAGATVAASPAEAAA---EADVVITM 64 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCE-------EEEEeCChhhhhHH------HHHcCCcccCCHHHHHH---hCCEEEEe
Confidence 4688886 54444 88999999875 333441 333 100 12358899999988765 47999999
Q ss_pred ccChhcHHHHHHH----hcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCeE-EcCCcccc
Q 007327 86 SSFRSAAASSMAA----LKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVV-IGPATVGG 141 (608)
Q Consensus 86 vp~~~~~~~~le~----~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~rv-lGPNc~Gi 141 (608)
||....+.+++-. +....-..++|-.+=.+....+++.+.++++|++. =.|=+-|.
T Consensus 65 v~~~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~ 125 (286)
T COG2084 65 LPDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGV 125 (286)
T ss_pred cCCHHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCc
Confidence 9998888887742 22233456777677788888999999999999874 45544333
No 112
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=93.05 E-value=0.51 Score=52.97 Aligned_cols=118 Identities=12% Similarity=-0.011 Sum_probs=70.5
Q ss_pred cEEEEE-cCCc-hHHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccC-ceeec--ccccCCHHHHhhcCCCccEEEEe
Q 007327 11 TQALFY-NYKQ-LPIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFG-QEEIA--IPVHSTVEAACAAHPMADVFINF 85 (608)
Q Consensus 11 s~avv~-g~~~-~~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g-~ev~G--~~~y~sv~~i~~~~p~vDlavi~ 85 (608)
.|++|| |..| ...+||.+.||. |...| ..... ...+.. ....| +.++.+++|+.....++|.++++
T Consensus 3 ~IgvIGLG~MG~~lA~nL~~~G~~-------V~v~d-r~~~~-~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~ 73 (470)
T PTZ00142 3 DIGLIGLAVMGQNLALNIASRGFK-------ISVYN-RTYEK-TEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILL 73 (470)
T ss_pred EEEEEeEhHHHHHHHHHHHHCCCe-------EEEEe-CCHHH-HHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEE
Confidence 478886 4444 489999999874 55555 32210 011100 01113 34678999987532236999999
Q ss_pred ccChhcHHHHHHHhcCC-CCCEEEEecCCCCHHHHHHHHHHHHhCCCeEEcCC
Q 007327 86 SSFRSAAASSMAALKQP-TIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPA 137 (608)
Q Consensus 86 vp~~~~~~~~le~~~~~-gv~~~viis~Gf~e~~~~~l~~~a~~~g~rvlGPN 137 (608)
||+...+..+++.+... .-..+||-.+--...+..++.+.++++|+++++--
T Consensus 74 v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldap 126 (470)
T PTZ00142 74 IKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMG 126 (470)
T ss_pred eCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCC
Confidence 99988888888876532 11233333332333455555678888899988763
No 113
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=93.02 E-value=0.46 Score=49.92 Aligned_cols=113 Identities=8% Similarity=-0.027 Sum_probs=64.8
Q ss_pred CcEEEEE-cCCch-HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecc
Q 007327 10 TTQALFY-NYKQL-PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSS 87 (608)
Q Consensus 10 ~s~avv~-g~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi~vp 87 (608)
++|++|| |..|. +.++|.+.||. |...+ .... ....+. -.|...+.+++++.......|+++++||
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~-------V~~~d-r~~~-~~~~l~---~~g~~~~~s~~~~~~~~~~~dvIi~~vp 68 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHD-------CVGYD-HDQD-AVKAMK---EDRTTGVANLRELSQRLSAPRVVWVMVP 68 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCE-------EEEEE-CCHH-HHHHHH---HcCCcccCCHHHHHhhcCCCCEEEEEcC
Confidence 3688886 33333 88899998764 44455 3221 011111 1355666788775442224699999999
Q ss_pred ChhcHHHHHHHhcCC-CCCEEEEecCCCCHHHHHHHHHHHHhCCCeEEc
Q 007327 88 FRSAAASSMAALKQP-TIRVVAIIAEGVPEADTKQLIAYARSNNKVVIG 135 (608)
Q Consensus 88 ~~~~~~~~le~~~~~-gv~~~viis~Gf~e~~~~~l~~~a~~~g~rvlG 135 (608)
.. .+.++++.+... .-..+||-.+.-.+....++.+.+++.|++++.
T Consensus 69 ~~-~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vd 116 (298)
T TIGR00872 69 HG-IVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLD 116 (298)
T ss_pred ch-HHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEe
Confidence 98 588888877532 112344444333333455555667777876554
No 114
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=92.96 E-value=0.39 Score=47.98 Aligned_cols=89 Identities=17% Similarity=0.032 Sum_probs=55.5
Q ss_pred CCCcEEEEEcCC--ch-HHHHHh--hCcccCCCCCCcEEEEeC-CCCCCccccccCceeecccccC--CHHHHhhcCCCc
Q 007327 8 SKTTQALFYNYK--QL-PIQRML--DFDFLCGRETPSVAGIIN-PGAEGFQKLFFGQEEIAIPVHS--TVEAACAAHPMA 79 (608)
Q Consensus 8 ~p~s~avv~g~~--~~-~~~~l~--~~~~~~~~g~~~v~~v~~-p~~~~~~~~~~g~ev~G~~~y~--sv~~i~~~~p~v 79 (608)
+...++|+ |++ |+ +.+.+. .. |..+++.++. |.+. |..+.|+|+++ ++.++.... ++
T Consensus 83 ~~~rV~II-GaG~iG~~l~~~~~~~~~------g~~ivgv~D~d~~~~-------~~~i~g~~v~~~~~l~~li~~~-~i 147 (213)
T PRK05472 83 RTWNVALV-GAGNLGRALLNYNGFEKR------GFKIVAAFDVDPEKI-------GTKIGGIPVYHIDELEEVVKEN-DI 147 (213)
T ss_pred CCcEEEEE-CCCHHHHHHHHhhhcccC------CcEEEEEEECChhhc-------CCEeCCeEEcCHHHHHHHHHHC-CC
Confidence 45577777 543 32 334321 23 3456666651 2222 24566777653 455544443 59
Q ss_pred cEEEEeccChhcHHHHHHHhcCCCCCEEEEecC
Q 007327 80 DVFINFSSFRSAAASSMAALKQPTIRVVAIIAE 112 (608)
Q Consensus 80 Dlavi~vp~~~~~~~~le~~~~~gv~~~viis~ 112 (608)
|.++|++|... ...+.+.|.++|++.++.++.
T Consensus 148 D~ViIa~P~~~-~~~i~~~l~~~Gi~~il~~~p 179 (213)
T PRK05472 148 EIGILTVPAEA-AQEVADRLVEAGIKGILNFAP 179 (213)
T ss_pred CEEEEeCCchh-HHHHHHHHHHcCCCEEeecCc
Confidence 99999999975 677888888899999998753
No 115
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=92.86 E-value=0.41 Score=50.24 Aligned_cols=109 Identities=7% Similarity=-0.013 Sum_probs=68.5
Q ss_pred cEEEEE-cCCch-HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEeccC
Q 007327 11 TQALFY-NYKQL-PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSF 88 (608)
Q Consensus 11 s~avv~-g~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi~vp~ 88 (608)
+|.+|| |..|. ..++|++.||. -.|+-.+ |... .+ .-.|.....+..|+.. +.|+++++||.
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~-----v~v~~~~-~~~~----~~---~~~g~~~~~s~~~~~~---~advVi~~v~~ 65 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQ-----LHVTTIG-PVAD----EL---LSLGAVSVETARQVTE---ASDIIFIMVPD 65 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCe-----EEEEeCC-HhHH----HH---HHcCCeecCCHHHHHh---cCCEEEEeCCC
Confidence 578885 43344 88999998764 1232222 3211 11 1146677788888755 47999999998
Q ss_pred hhcHHHHHHH---hc-CCCCCEEEEecCCCCHHHHHHHHHHHHhCCCeEEc
Q 007327 89 RSAAASSMAA---LK-QPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIG 135 (608)
Q Consensus 89 ~~~~~~~le~---~~-~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~rvlG 135 (608)
...+.+++.. +. ...-..++|-++.......+++.+.++++|.+++-
T Consensus 66 ~~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vd 116 (292)
T PRK15059 66 TPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLD 116 (292)
T ss_pred hHHHHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 7555665532 11 11123466667777777888898999988876544
No 116
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=92.84 E-value=0.68 Score=49.55 Aligned_cols=97 Identities=18% Similarity=0.134 Sum_probs=60.4
Q ss_pred CCCCCCcEEEEE-cCCch-HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEE
Q 007327 5 QLFSKTTQALFY-NYKQL-PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVF 82 (608)
Q Consensus 5 ~l~~p~s~avv~-g~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDla 82 (608)
..+..++|+||| |..|. +.++|.+.|+. ++.+.. ++...+. . .+-.|+... +++|+.+ +.|++
T Consensus 13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~~------Vvv~~r-~~~~s~~-~---A~~~G~~~~-s~~eaa~---~ADVV 77 (330)
T PRK05479 13 SLIKGKKVAIIGYGSQGHAHALNLRDSGVD------VVVGLR-EGSKSWK-K---AEADGFEVL-TVAEAAK---WADVI 77 (330)
T ss_pred hhhCCCEEEEEeeHHHHHHHHHHHHHCCCE------EEEEEC-CchhhHH-H---HHHCCCeeC-CHHHHHh---cCCEE
Confidence 356778899996 44444 88999998753 443333 3121100 0 122356555 7888765 47999
Q ss_pred EEeccChhcHHHHH-HHhcC-CCCCEEEEecCCCCHH
Q 007327 83 INFSSFRSAAASSM-AALKQ-PTIRVVAIIAEGVPEA 117 (608)
Q Consensus 83 vi~vp~~~~~~~~l-e~~~~-~gv~~~viis~Gf~e~ 117 (608)
+++||+.. ...++ +++.. ..-..++++++||+-.
T Consensus 78 vLaVPd~~-~~~V~~~~I~~~Lk~g~iL~~a~G~~i~ 113 (330)
T PRK05479 78 MILLPDEV-QAEVYEEEIEPNLKEGAALAFAHGFNIH 113 (330)
T ss_pred EEcCCHHH-HHHHHHHHHHhcCCCCCEEEECCCCChh
Confidence 99999875 46666 54542 2224577999999864
No 117
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=92.80 E-value=0.7 Score=48.22 Aligned_cols=109 Identities=10% Similarity=0.055 Sum_probs=65.1
Q ss_pred CcEEEEE-cCCch-HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecc
Q 007327 10 TTQALFY-NYKQL-PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSS 87 (608)
Q Consensus 10 ~s~avv~-g~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi~vp 87 (608)
++|+||| |..|. +.+++.+.|+. |.+.+ +.... ...+ .-.|.....+.+++.. +.|++++++|
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~-------v~~~d-~~~~~-~~~~---~~~g~~~~~~~~e~~~---~~d~vi~~vp 67 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYS-------LVVYD-RNPEA-VAEV---IAAGAETASTAKAVAE---QCDVIITMLP 67 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCe-------EEEEc-CCHHH-HHHH---HHCCCeecCCHHHHHh---cCCEEEEeCC
Confidence 3688886 33343 78888887653 44555 42210 0001 1135667778888765 4799999999
Q ss_pred ChhcHHHHH---HHhcC-CCCCEEEEecCCCCHHHHHHHHHHHHhCCCeE
Q 007327 88 FRSAAASSM---AALKQ-PTIRVVAIIAEGVPEADTKQLIAYARSNNKVV 133 (608)
Q Consensus 88 ~~~~~~~~l---e~~~~-~gv~~~viis~Gf~e~~~~~l~~~a~~~g~rv 133 (608)
....+..++ +.+.. ..-..+++-++.+.....+++.+.+++.|+++
T Consensus 68 ~~~~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~ 117 (296)
T PRK11559 68 NSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEM 117 (296)
T ss_pred CHHHHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcE
Confidence 766555554 22221 12234555566677777778888887776554
No 118
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=92.75 E-value=0.4 Score=50.01 Aligned_cols=100 Identities=11% Similarity=0.019 Sum_probs=65.7
Q ss_pred hHHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEeccChhcHHHHH---H
Q 007327 21 LPIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRSAAASSM---A 97 (608)
Q Consensus 21 ~~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~~~~l---e 97 (608)
...++|.+.||. |...+ +.... ...+ .-.|.....+..++.. +.|+++++||....+..++ +
T Consensus 10 ~mA~~L~~~G~~-------V~v~d-r~~~~-~~~l---~~~g~~~~~s~~~~~~---~advVil~vp~~~~~~~v~~g~~ 74 (288)
T TIGR01692 10 PMAANLLKAGHP-------VRVFD-LFPDA-VEEA---VAAGAQAAASPAEAAE---GADRVITMLPAGQHVISVYSGDE 74 (288)
T ss_pred HHHHHHHhCCCe-------EEEEe-CCHHH-HHHH---HHcCCeecCCHHHHHh---cCCEEEEeCCChHHHHHHHcCcc
Confidence 378899988764 44555 42220 0111 1135666778888765 4799999999865566666 3
Q ss_pred Hhc-CCCCCEEEEecCCCCHHHHHHHHHHHHhCCCeEEc
Q 007327 98 ALK-QPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIG 135 (608)
Q Consensus 98 ~~~-~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~rvlG 135 (608)
.+. ...-+.++|.++++.....+++.+.++++|++++.
T Consensus 75 ~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vd 113 (288)
T TIGR01692 75 GILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMD 113 (288)
T ss_pred hHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEE
Confidence 332 22334577777888888888899999999987654
No 119
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=92.54 E-value=0.63 Score=49.61 Aligned_cols=112 Identities=13% Similarity=-0.003 Sum_probs=66.8
Q ss_pred CCcEEEEE-cCCch-HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEec
Q 007327 9 KTTQALFY-NYKQL-PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFS 86 (608)
Q Consensus 9 p~s~avv~-g~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi~v 86 (608)
+..++||| |.-|+ +.+.+.+.. +.++++.+. ....... + +-.++..+.+..+.. +++|++++|+
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~p-----d~ELVgV~d-r~~~~~~----~-~~~~v~~~~d~~e~l---~~iDVViIct 68 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQP-----DMELVGVFS-RRGAETL----D-TETPVYAVADDEKHL---DDVDVLILCM 68 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCC-----CcEEEEEEc-CCcHHHH----h-hcCCccccCCHHHhc---cCCCEEEEcC
Confidence 45778885 43344 777777653 456776666 3221100 1 112333334555543 2689999999
Q ss_pred cChhcHHHHHHHhcCCCCCEEEEecCCCC-HHHHHHHHHHHHh-CCCeEEc
Q 007327 87 SFRSAAASSMAALKQPTIRVVAIIAEGVP-EADTKQLIAYARS-NNKVVIG 135 (608)
Q Consensus 87 p~~~~~~~~le~~~~~gv~~~viis~Gf~-e~~~~~l~~~a~~-~g~rvlG 135 (608)
|.....+.+.+.+. +|+..+...--.-. +...++|-+.|++ .++-++|
T Consensus 69 Ps~th~~~~~~~L~-aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vsvi~ 118 (324)
T TIGR01921 69 GSATDIPEQAPYFA-QFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVSVIS 118 (324)
T ss_pred CCccCHHHHHHHHH-cCCCEEECCCcccCCHHHHHHHHHHHHHcCCEEEEE
Confidence 98877777767665 78875544322111 2256778888887 5788888
No 120
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=92.26 E-value=0.75 Score=47.95 Aligned_cols=110 Identities=6% Similarity=0.000 Sum_probs=66.2
Q ss_pred cEEEEE-cCCch-HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEeccC
Q 007327 11 TQALFY-NYKQL-PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSF 88 (608)
Q Consensus 11 s~avv~-g~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi~vp~ 88 (608)
+|+||| |..|. +.+++.+.||. |..++ +.... ...+ .-.|.....+..++.. +.|+++++||.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~-------V~~~d-r~~~~-~~~~---~~~g~~~~~~~~~~~~---~aDivi~~vp~ 65 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQ-------LHVTT-IGPEV-ADEL---LAAGAVTAETARQVTE---QADVIFTMVPD 65 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCe-------EEEEc-CCHHH-HHHH---HHCCCcccCCHHHHHh---cCCEEEEecCC
Confidence 377886 44444 78888888764 44555 42210 0001 1134556678877765 47999999998
Q ss_pred hhcHHHHH---HHhcCC-CCCEEEEecCCCCHHHHHHHHHHHHhCCCeEEc
Q 007327 89 RSAAASSM---AALKQP-TIRVVAIIAEGVPEADTKQLIAYARSNNKVVIG 135 (608)
Q Consensus 89 ~~~~~~~l---e~~~~~-gv~~~viis~Gf~e~~~~~l~~~a~~~g~rvlG 135 (608)
...+..++ +.+... .-..++|-++.......+++.+.+++.|+.++.
T Consensus 66 ~~~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~ 116 (291)
T TIGR01505 66 SPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLD 116 (291)
T ss_pred HHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEe
Confidence 65455554 222211 223455556666666777888888888877665
No 121
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=92.12 E-value=0.33 Score=50.84 Aligned_cols=95 Identities=19% Similarity=0.155 Sum_probs=64.8
Q ss_pred CCCCCcEEEEE-cCCch-HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEE
Q 007327 6 LFSKTTQALFY-NYKQL-PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFI 83 (608)
Q Consensus 6 l~~p~s~avv~-g~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlav 83 (608)
++.=++||||| |..|. ...||.|.| .+++.|+- ++...|.+ .+-.|..+| +++|+.+ ..|+++
T Consensus 15 ~LkgK~iaIIGYGsQG~ahalNLRDSG------lnViiGlr-~g~~s~~k----A~~dGf~V~-~v~ea~k---~ADvim 79 (338)
T COG0059 15 LLKGKKVAIIGYGSQGHAQALNLRDSG------LNVIIGLR-KGSSSWKK----AKEDGFKVY-TVEEAAK---RADVVM 79 (338)
T ss_pred HhcCCeEEEEecChHHHHHHhhhhhcC------CcEEEEec-CCchhHHH----HHhcCCEee-cHHHHhh---cCCEEE
Confidence 66777999996 56666 888999996 45777775 54432211 355788888 6888765 479999
Q ss_pred EeccChhcHHHHHHHhcCC--CCCEEEEecCCCCH
Q 007327 84 NFSSFRSAAASSMAALKQP--TIRVVAIIAEGVPE 116 (608)
Q Consensus 84 i~vp~~~~~~~~le~~~~~--gv~~~viis~Gf~e 116 (608)
+.+|... -..+.+.-.+. .-+.++.|+.||..
T Consensus 80 ~L~PDe~-q~~vy~~~I~p~Lk~G~aL~FaHGfNi 113 (338)
T COG0059 80 ILLPDEQ-QKEVYEKEIAPNLKEGAALGFAHGFNI 113 (338)
T ss_pred EeCchhh-HHHHHHHHhhhhhcCCceEEeccccce
Confidence 9999864 45555522222 23458888999864
No 122
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=91.30 E-value=0.62 Score=47.05 Aligned_cols=100 Identities=9% Similarity=0.002 Sum_probs=58.3
Q ss_pred CCCcEEEEE-cCCch-HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEe
Q 007327 8 SKTTQALFY-NYKQL-PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINF 85 (608)
Q Consensus 8 ~p~s~avv~-g~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi~ 85 (608)
+.++++++| |..|. +.+.+.+.++. ....+..++ .....+...+ .+-.|++.+.+..++.+ +.|+++++
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~---~~~~i~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~DiViia 73 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKE---YIEEIIVSN-RSNVEKLDQL--QARYNVSTTTDWKQHVT---SVDTIVLA 73 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCC---CcCeEEEEC-CCCHHHHHHH--HHHcCcEEeCChHHHHh---cCCEEEEe
Confidence 356788885 22233 66777766421 122244444 2111111111 01235677888888765 48999999
Q ss_pred ccChhcHHHHHHHhcCC-CCCEEEEecCCCCHH
Q 007327 86 SSFRSAAASSMAALKQP-TIRVVAIIAEGVPEA 117 (608)
Q Consensus 86 vp~~~~~~~~le~~~~~-gv~~~viis~Gf~e~ 117 (608)
+|+.. ...+++++... .=+.+|-++.|+.-.
T Consensus 74 vp~~~-~~~v~~~l~~~~~~~~vis~~~gi~~~ 105 (245)
T PRK07634 74 MPPSA-HEELLAELSPLLSNQLVVTVAAGIGPS 105 (245)
T ss_pred cCHHH-HHHHHHHHHhhccCCEEEEECCCCCHH
Confidence 99975 67788876531 225667778899765
No 123
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=91.26 E-value=1.1 Score=50.41 Aligned_cols=115 Identities=11% Similarity=0.036 Sum_probs=66.8
Q ss_pred EEEEE-c-CCchHHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCc--eeecccccCCHHHHhhcCCCccEEEEecc
Q 007327 12 QALFY-N-YKQLPIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQ--EEIAIPVHSTVEAACAAHPMADVFINFSS 87 (608)
Q Consensus 12 ~avv~-g-~~~~~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~--ev~G~~~y~sv~~i~~~~p~vDlavi~vp 87 (608)
|.+|| | ++..+.+||.+.||. |...| .... ....+... .-.++..+.+++|+.....++|+++++||
T Consensus 2 IG~IGLG~MG~~mA~nL~~~G~~-------V~v~d-rt~~-~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~ 72 (467)
T TIGR00873 2 IGVIGLAVMGSNLALNMADHGFT-------VSVYN-RTPE-KTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVK 72 (467)
T ss_pred EEEEeeHHHHHHHHHHHHhcCCe-------EEEEe-CCHH-HHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECC
Confidence 56775 4 334489999999874 44555 3221 11111000 00135678888887643224699999999
Q ss_pred ChhcHHHHHHHhcCC-CCCEEEEecC-CCCHHHHHHHHHHHHhCCCeEEcC
Q 007327 88 FRSAAASSMAALKQP-TIRVVAIIAE-GVPEADTKQLIAYARSNNKVVIGP 136 (608)
Q Consensus 88 ~~~~~~~~le~~~~~-gv~~~viis~-Gf~e~~~~~l~~~a~~~g~rvlGP 136 (608)
+...++++++.+... .-..+||=.+ ..++ +..+..+.+++.|+++++-
T Consensus 73 ~~~~v~~Vi~~l~~~L~~g~iIID~gns~~~-~t~~~~~~l~~~gi~fvda 122 (467)
T TIGR00873 73 AGAPVDAVINQLLPLLEKGDIIIDGGNSHYP-DTERRYKELKAKGILFVGS 122 (467)
T ss_pred CcHHHHHHHHHHHhhCCCCCEEEECCCcCHH-HHHHHHHHHHhcCCEEEcC
Confidence 977788888876532 1223444333 3444 3334455677788887765
No 124
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=91.12 E-value=1.4 Score=46.23 Aligned_cols=109 Identities=11% Similarity=0.017 Sum_probs=66.4
Q ss_pred cEEEEE-cCCch-HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEeccC
Q 007327 11 TQALFY-NYKQL-PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSF 88 (608)
Q Consensus 11 s~avv~-g~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi~vp~ 88 (608)
+|++|| |..|. ..+++.+.||. |..++ +.... ...+. -.|.....+..++.. +.|+++++||.
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~-------V~v~d-~~~~~-~~~~~---~~g~~~~~s~~~~~~---~aDvVi~~vp~ 67 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQ-------LQVFD-VNPQA-VDALV---DKGATPAASPAQAAA---GAEFVITMLPN 67 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCe-------EEEEc-CCHHH-HHHHH---HcCCcccCCHHHHHh---cCCEEEEecCC
Confidence 578886 43344 78889888764 55555 42221 11110 135667778888765 47999999999
Q ss_pred hhcHHHHHHHh---c-CCCCCEEEEecCCCCHHHHHHHHHHHHhCCCeEE
Q 007327 89 RSAAASSMAAL---K-QPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVI 134 (608)
Q Consensus 89 ~~~~~~~le~~---~-~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~rvl 134 (608)
...+..++... . ...-..++|-++-+.....+++.+.+++.|++++
T Consensus 68 ~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~l 117 (296)
T PRK15461 68 GDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMM 117 (296)
T ss_pred HHHHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEE
Confidence 76566665421 1 1112334555555555577788888888887754
No 125
>PRK10206 putative oxidoreductase; Provisional
Probab=90.57 E-value=0.99 Score=48.47 Aligned_cols=69 Identities=20% Similarity=0.179 Sum_probs=49.9
Q ss_pred cccccCCHHHHhhcCCCccEEEEeccChhcHHHHHHHhcCCCCCEEEEec-CCCCHHHHHHHHHHHHhCCCeE
Q 007327 62 AIPVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQPTIRVVAIIA-EGVPEADTKQLIAYARSNNKVV 133 (608)
Q Consensus 62 G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~~~~le~~~~~gv~~~viis-~Gf~e~~~~~l~~~a~~~g~rv 133 (608)
+.+.|.+.+|+... +++|+++|++|...-.+.+++++. +| |.++|== -.......++|++.|+++|+.+
T Consensus 49 ~~~~~~~~~ell~~-~~iD~V~I~tp~~~H~~~~~~al~-aG-khVl~EKPla~~~~ea~~l~~~a~~~~~~l 118 (344)
T PRK10206 49 HIHFTSDLDEVLND-PDVKLVVVCTHADSHFEYAKRALE-AG-KNVLVEKPFTPTLAEAKELFALAKSKGLTV 118 (344)
T ss_pred CCcccCCHHHHhcC-CCCCEEEEeCCchHHHHHHHHHHH-cC-CcEEEecCCcCCHHHHHHHHHHHHHhCCEE
Confidence 47899999999864 369999999999875665655554 77 4455411 1223346789999999999875
No 126
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=90.53 E-value=0.87 Score=55.63 Aligned_cols=123 Identities=15% Similarity=0.131 Sum_probs=72.5
Q ss_pred ccc-cCCHHHHhhcCCCccEEEEeccChhcHHHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCeEEcCCcccc
Q 007327 63 IPV-HSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVGG 141 (608)
Q Consensus 63 ~~~-y~sv~~i~~~~p~vDlavi~vp~~~~~~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~rvlGPNc~Gi 141 (608)
++. |.+.+++.....++|++|+++|... -..+.++|.++|+.. +..+ +-....++|.+.|+++|+.++- . +|
T Consensus 632 v~lDv~D~e~L~~~v~~~DaVIsalP~~~-H~~VAkaAieaGkHv-v~ek--y~~~e~~~L~e~Ak~AGV~~m~-e-~G- 704 (1042)
T PLN02819 632 VQLDVSDSESLLKYVSQVDVVISLLPASC-HAVVAKACIELKKHL-VTAS--YVSEEMSALDSKAKEAGITILC-E-MG- 704 (1042)
T ss_pred EEeecCCHHHHHHhhcCCCEEEECCCchh-hHHHHHHHHHcCCCE-EECc--CCHHHHHHHHHHHHHcCCEEEE-C-Cc-
Confidence 444 6677766542124899999999976 567888888899754 3333 5556788999999999988552 2 33
Q ss_pred cccCcccccccCCcccccccccCCCCCc-EEEEecChhHHHHHHHHHHhcCCceeEEeec
Q 007327 142 IQAGAFKIGDTAGTIDNIIHCKLYRPGS-VGFVSKSGGMSNELYNTIARVTDGIYEGIAI 200 (608)
Q Consensus 142 ~~~~~~~l~~~~~~~~~~~p~~~~~~G~-valvSQSG~l~~~~~~~~~~~g~G~s~~vs~ 200 (608)
++|+...+ -+. ........+-|. ..+.|.+|++-.- .....-+++...+|.
T Consensus 705 lDPGid~~---lA~--~~Id~~~~~~GkI~s~~s~~GGLP~p---e~~~npL~YkfsWSp 756 (1042)
T PLN02819 705 LDPGIDHM---MAM--KMIDDAHERGGKVKSFTSYCGGLPSP---EAANNPLAYKFSWNP 756 (1042)
T ss_pred cCHHHHHH---HHH--HHHHhhcccCCcEEEEEEEEcCccCc---ccCCCcccccccCCH
Confidence 66654221 000 000000012344 5688888988621 123345665554443
No 127
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=89.90 E-value=1.1 Score=47.68 Aligned_cols=95 Identities=17% Similarity=0.099 Sum_probs=60.6
Q ss_pred CCCCCCcEEEEE-cCCch-HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEE
Q 007327 5 QLFSKTTQALFY-NYKQL-PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVF 82 (608)
Q Consensus 5 ~l~~p~s~avv~-g~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDla 82 (608)
..++-++++||| |..|+ +.+||.++|+. ++.+.. +.+.... .+..|..++ |++|+.. ..|++
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~------ViV~~r-~~~s~~~-----A~~~G~~v~-sl~Eaak---~ADVV 75 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVE------VVVGVR-PGKSFEV-----AKADGFEVM-SVSEAVR---TAQVV 75 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHHHHCcCE------EEEEEC-cchhhHH-----HHHcCCEEC-CHHHHHh---cCCEE
Confidence 356677899996 55555 88999999764 443333 3222100 123456554 8999876 47999
Q ss_pred EEeccChhcHHHHHH--HhcCCCCCEEEEecCCCCH
Q 007327 83 INFSSFRSAAASSMA--ALKQPTIRVVAIIAEGVPE 116 (608)
Q Consensus 83 vi~vp~~~~~~~~le--~~~~~gv~~~viis~Gf~e 116 (608)
++++|.... ..++. ......-..+++++-||+.
T Consensus 76 ~llLPd~~t-~~V~~~eil~~MK~GaiL~f~hgfni 110 (335)
T PRK13403 76 QMLLPDEQQ-AHVYKAEVEENLREGQMLLFSHGFNI 110 (335)
T ss_pred EEeCCChHH-HHHHHHHHHhcCCCCCEEEECCCcce
Confidence 999998653 45543 2333445678999999964
No 128
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=89.06 E-value=1.2 Score=47.42 Aligned_cols=116 Identities=13% Similarity=-0.035 Sum_probs=63.7
Q ss_pred CCcEEEEE-cCCch-HHHHHhhCcccCCCCCCcEEEEeCCCCC--Cccccc--cCceeec------ccccCCHHHHhhcC
Q 007327 9 KTTQALFY-NYKQL-PIQRMLDFDFLCGRETPSVAGIINPGAE--GFQKLF--FGQEEIA------IPVHSTVEAACAAH 76 (608)
Q Consensus 9 p~s~avv~-g~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p~~~--~~~~~~--~g~ev~G------~~~y~sv~~i~~~~ 76 (608)
.++|+|+| |..|. +.++|.+.|+. |..++ +... ...... .+..+.| +....+.+++..
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~-------V~~~~-r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~-- 73 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVP-------VRLWA-RRPEFAAALAAERENREYLPGVALPAELYPTADPEEALA-- 73 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCe-------EEEEe-CCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHc--
Confidence 46789986 33344 77788888753 44444 3111 000000 0001113 345567777543
Q ss_pred CCccEEEEeccChhcHHHHHHHhcCCCCCEEEEecCCCCHHH--HHHHHHHHHh---CCCe-EEcCCc
Q 007327 77 PMADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEAD--TKQLIAYARS---NNKV-VIGPAT 138 (608)
Q Consensus 77 p~vDlavi~vp~~~~~~~~le~~~~~gv~~~viis~Gf~e~~--~~~l~~~a~~---~g~r-vlGPNc 138 (608)
..|+++++||... +.++++.+. .+. .+|.++.|+.... .+++.+...+ .++. +.|||.
T Consensus 74 -~aD~Vi~~v~~~~-~~~v~~~l~-~~~-~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~ 137 (328)
T PRK14618 74 -GADFAVVAVPSKA-LRETLAGLP-RAL-GYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNH 137 (328)
T ss_pred -CCCEEEEECchHH-HHHHHHhcC-cCC-EEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccH
Confidence 4799999999986 677877765 343 4555677875332 3444444444 4443 556654
No 129
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=89.06 E-value=2 Score=44.52 Aligned_cols=71 Identities=13% Similarity=0.136 Sum_probs=52.4
Q ss_pred ccccCCHHHHhhcCCCccEEEEeccChhcHHHHHHHhcCCCCCEEEEecCCCCHH-HHHHHHHHHHhCCCeEEcC
Q 007327 63 IPVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEA-DTKQLIAYARSNNKVVIGP 136 (608)
Q Consensus 63 ~~~y~sv~~i~~~~p~vDlavi~vp~~~~~~~~le~~~~~gv~~~viis~Gf~e~-~~~~l~~~a~~~g~rvlGP 136 (608)
.+++.+++++... ++|++|=|-++.. +.+.-+.+-++|...+++-.+-|.+. ..++|.+.|+++|-++.=|
T Consensus 49 ~~~~~~l~~ll~~--~~DlVVE~A~~~a-v~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ip 120 (267)
T PRK13301 49 VALLDGLPGLLAW--RPDLVVEAAGQQA-IAEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAGGARIRVP 120 (267)
T ss_pred CcccCCHHHHhhc--CCCEEEECCCHHH-HHHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEEe
Confidence 7899999996544 4799998777765 55555556657888666644668764 7899999999988776434
No 130
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=88.75 E-value=2.1 Score=48.00 Aligned_cols=108 Identities=14% Similarity=0.015 Sum_probs=67.6
Q ss_pred chHHHHHhhCcccCCCCCCcEEEEeCCCCCCcccccc---CceeecccccCCHHHHhhcCCCccEEEEeccChhcHHHHH
Q 007327 20 QLPIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFF---GQEEIAIPVHSTVEAACAAHPMADVFINFSSFRSAAASSM 96 (608)
Q Consensus 20 ~~~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~---g~ev~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~~~~l 96 (608)
....+||++.||. |...| .... ....+. |. -.|...+.|++|+.....++|+++++||....+++++
T Consensus 3 ~~mA~nL~~~G~~-------V~v~n-rt~~-~~~~l~~~~g~-~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi 72 (459)
T PRK09287 3 KNLALNIASHGYT-------VAVYN-RTPE-KTDEFLAEEGK-GKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVI 72 (459)
T ss_pred HHHHHHHHhCCCe-------EEEEC-CCHH-HHHHHHHhhCC-CCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHH
Confidence 4478999999885 44555 3221 111111 11 1357788999998764323699999999998888888
Q ss_pred HHhcCCCC-CEEEEecCCCCHHHHHHHHHHHHhCCCeEEcCC
Q 007327 97 AALKQPTI-RVVAIIAEGVPEADTKQLIAYARSNNKVVIGPA 137 (608)
Q Consensus 97 e~~~~~gv-~~~viis~Gf~e~~~~~l~~~a~~~g~rvlGPN 137 (608)
+.+...-- ..+||=.+--...+.++..+.+++.|+++++--
T Consensus 73 ~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdap 114 (459)
T PRK09287 73 EQLLPLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMG 114 (459)
T ss_pred HHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecC
Confidence 76653222 234443332333455566677888999988763
No 131
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=88.10 E-value=5.1 Score=40.37 Aligned_cols=103 Identities=19% Similarity=0.170 Sum_probs=67.1
Q ss_pred CCchHHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEeccChhcHHHHHH
Q 007327 18 YKQLPIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRSAAASSMA 97 (608)
Q Consensus 18 ~~~~~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~~~~le 97 (608)
++.|++.|+.++...| ..|.-+.+|... ++.- ...++.+++.++.|++|...-.......+.+
T Consensus 8 yGeR~~~~i~~~~~~~----~~v~~~~~p~~l--------~efI-----d~pee~Lp~i~~~Dl~I~y~lHPDl~~~l~~ 70 (217)
T PF02593_consen 8 YGERVIENIKNYFDFC----RSVIVYEIPEDL--------PEFI-----DDPEEYLPKIPEADLLIAYGLHPDLTYELPE 70 (217)
T ss_pred chHHHHHHHHhcCCCC----ceEEEEeCCccc--------cccc-----cChHHHccCCCCCCEEEEeccCchhHHHHHH
Confidence 6667999998875331 135556656422 1211 1123333334568999874433344667888
Q ss_pred HhcCCCCCEEEEecCCCCH-HHHHHHHHHHHhCCCeEEcCCc
Q 007327 98 ALKQPTIRVVAIIAEGVPE-ADTKQLIAYARSNNKVVIGPAT 138 (608)
Q Consensus 98 ~~~~~gv~~~viis~Gf~e-~~~~~l~~~a~~~g~rvlGPNc 138 (608)
.|.+.|+|++|+- ++-+. .+.++|.+.+.+.|+.+.-|.-
T Consensus 71 ~~~e~g~kavIvp-~~~~~~g~~~~lk~~~e~~gi~~~~P~~ 111 (217)
T PF02593_consen 71 IAKEAGVKAVIVP-SESPKPGLRRQLKKQLEEFGIEVEFPKP 111 (217)
T ss_pred HHHHcCCCEEEEe-cCCCccchHHHHHHHHHhcCceeecCcc
Confidence 8888999988664 44444 4788999999999999999974
No 132
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=87.96 E-value=2.8 Score=42.41 Aligned_cols=113 Identities=12% Similarity=0.058 Sum_probs=69.5
Q ss_pred cEEEEE-cCCch-HHHHHhhCcccCCCCCCcEEEEeCCCCCC-ccccccCceeecccccCCHHHHhhcCCCccEEEEecc
Q 007327 11 TQALFY-NYKQL-PIQRMLDFDFLCGRETPSVAGIINPGAEG-FQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSS 87 (608)
Q Consensus 11 s~avv~-g~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p~~~~-~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi~vp 87 (608)
++.+|| |+-|+ +++.+.+.- .+.+.++..+ ... +... -..-.+.+|-.+++|..+ ++|++|=|-.
T Consensus 2 ~vgiVGcGaIG~~l~e~v~~~~----~~~e~v~v~D---~~~ek~~~--~~~~~~~~~~s~ide~~~---~~DlvVEaAS 69 (255)
T COG1712 2 KVGIVGCGAIGKFLLELVRDGR----VDFELVAVYD---RDEEKAKE--LEASVGRRCVSDIDELIA---EVDLVVEAAS 69 (255)
T ss_pred eEEEEeccHHHHHHHHHHhcCC----cceeEEEEec---CCHHHHHH--HHhhcCCCccccHHHHhh---ccceeeeeCC
Confidence 577886 55555 666655541 1233443332 221 1010 112345566688988764 5899998888
Q ss_pred ChhcHHHHHHHhcCCCCCEEEEecCCCCHH-HHHHHHHHHHhCCCeEEcC
Q 007327 88 FRSAAASSMAALKQPTIRVVAIIAEGVPEA-DTKQLIAYARSNNKVVIGP 136 (608)
Q Consensus 88 ~~~~~~~~le~~~~~gv~~~viis~Gf~e~-~~~~l~~~a~~~g~rvlGP 136 (608)
++. +......+-++|+..+|+-.+-++|. +.+++.+.|+.+|-|+-=|
T Consensus 70 ~~A-v~e~~~~~L~~g~d~iV~SVGALad~~l~erl~~lak~~~~rv~~p 118 (255)
T COG1712 70 PEA-VREYVPKILKAGIDVIVMSVGALADEGLRERLRELAKCGGARVYLP 118 (255)
T ss_pred HHH-HHHHhHHHHhcCCCEEEEechhccChHHHHHHHHHHhcCCcEEEec
Confidence 876 44444444458999888877778866 7788999998877765443
No 133
>PRK07680 late competence protein ComER; Validated
Probab=87.72 E-value=1.2 Score=45.93 Aligned_cols=95 Identities=9% Similarity=0.015 Sum_probs=55.1
Q ss_pred cEEEEE-cCCch-HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEeccC
Q 007327 11 TQALFY-NYKQL-PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSF 88 (608)
Q Consensus 11 s~avv~-g~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi~vp~ 88 (608)
+++||| |..|. +.+.+.+.|+. ....|...+ +.... ...+. ++..|++...+..++.. +.|+++++||+
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~---~~~~v~v~~-r~~~~-~~~~~-~~~~g~~~~~~~~~~~~---~aDiVilav~p 72 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAV---KPSQLTITN-RTPAK-AYHIK-ERYPGIHVAKTIEEVIS---QSDLIFICVKP 72 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCC---CcceEEEEC-CCHHH-HHHHH-HHcCCeEEECCHHHHHH---hCCEEEEecCH
Confidence 588886 33344 77888877631 111344444 32211 00010 11226677788887654 47999999998
Q ss_pred hhcHHHHHHHhcCC--CCCEEEEecCCCC
Q 007327 89 RSAAASSMAALKQP--TIRVVAIIAEGVP 115 (608)
Q Consensus 89 ~~~~~~~le~~~~~--gv~~~viis~Gf~ 115 (608)
.. +.++++.+... .-+.+|-+++|..
T Consensus 73 ~~-~~~vl~~l~~~l~~~~~iis~~ag~~ 100 (273)
T PRK07680 73 LD-IYPLLQKLAPHLTDEHCLVSITSPIS 100 (273)
T ss_pred HH-HHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 75 77788876521 1245666777875
No 134
>PRK12350 citrate synthase 2; Provisional
Probab=87.56 E-value=0.3 Score=52.69 Aligned_cols=49 Identities=24% Similarity=0.287 Sum_probs=40.7
Q ss_pred CcchhhhheeccCCC--CcccCCCCCCcccccCCcHHHHHHHhhcCCCCChh
Q 007327 349 APTHIISTISDDRGE--EPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRY 398 (608)
Q Consensus 349 ~i~A~~t~I~~~~g~--~i~~~g~dl~~li~~~~~~~~~l~~l~~~~~~~~~ 398 (608)
.+++..|+||..+|+ .+.||||++.||.++. +|+++.|+||+|+-|+..
T Consensus 7 ~v~~~~s~Is~idg~~G~L~YRGy~i~dLa~~~-sFeEva~LL~~G~LP~~~ 57 (353)
T PRK12350 7 GVVAFETEIAEPDGDGGALRYRGVDIEDLVGRV-TFEDVWALLVDGRFGPGL 57 (353)
T ss_pred CceeEeeeCcceeCCCCEEEECCccHHHHhccC-CHHHHHHHHHCCCCCCcc
Confidence 445667788877766 4899999999999998 999999999999877653
No 135
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=87.45 E-value=0.71 Score=44.34 Aligned_cols=94 Identities=14% Similarity=0.122 Sum_probs=56.0
Q ss_pred CCCCcEEEEE-cCCch-HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEE
Q 007327 7 FSKTTQALFY-NYKQL-PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFIN 84 (608)
Q Consensus 7 ~~p~s~avv~-g~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi 84 (608)
+.-++|+|+| |..|+ ..+||.|.|+. ++.+.. ++...+. -.+-.|..++ +++|+.. +.|++++
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~~------V~Vglr-~~s~s~~----~A~~~Gf~v~-~~~eAv~---~aDvV~~ 66 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGVN------VIVGLR-EGSASWE----KAKADGFEVM-SVAEAVK---KADVVML 66 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC-E------EEEEE--TTCHHHH----HHHHTT-ECC-EHHHHHH---C-SEEEE
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCCC------EEEEec-CCCcCHH----HHHHCCCeec-cHHHHHh---hCCEEEE
Confidence 3457899994 33344 88899999753 565665 5332110 0245778887 6788766 4799999
Q ss_pred eccChhcHHHHH-HHhc-CCCCCEEEEecCCCCH
Q 007327 85 FSSFRSAAASSM-AALK-QPTIRVVAIIAEGVPE 116 (608)
Q Consensus 85 ~vp~~~~~~~~l-e~~~-~~gv~~~viis~Gf~e 116 (608)
.+|... -.++. ++.. ...-..+++++.||+.
T Consensus 67 L~PD~~-q~~vy~~~I~p~l~~G~~L~fahGfni 99 (165)
T PF07991_consen 67 LLPDEV-QPEVYEEEIAPNLKPGATLVFAHGFNI 99 (165)
T ss_dssp -S-HHH-HHHHHHHHHHHHS-TT-EEEESSSHHH
T ss_pred eCChHH-HHHHHHHHHHhhCCCCCEEEeCCcchh
Confidence 999864 45554 3333 2456679999999975
No 136
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]
Probab=86.87 E-value=0.92 Score=52.29 Aligned_cols=186 Identities=11% Similarity=-0.012 Sum_probs=119.4
Q ss_pred eeecccccCCHHHHhhcCCCccEEEEeccChhcHHHHHHHhcCCCCCEEEEecCCCCHHH-HHHHHHHHHhCCC-eEEcC
Q 007327 59 EEIAIPVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEAD-TKQLIAYARSNNK-VVIGP 136 (608)
Q Consensus 59 ev~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~~~~le~~~~~gv~~~viis~Gf~e~~-~~~l~~~a~~~g~-rvlGP 136 (608)
+..|-+++...+.+.. .+ +.+....+... ..-.-..+....+++-|-+++++.++. .+.+...++..++ .++.=
T Consensus 306 tn~Gg~gvla~D~l~~-~g--~~l~~~~~~~~-~~l~~~Lp~~~~~~NPvD~~~~a~~e~y~~~~~~~~~~~~~~~llvi 381 (598)
T COG1042 306 TNGGGPGVLAADALEE-RG--LKLAELSEETI-EKLRSRLPPHASVKNPVDLTGDADAERYKKTLEILLRDENVDALLVI 381 (598)
T ss_pred ecCCCccccchhHHHH-cC--CCcCCCCHHHH-HHHHhhcCccccccCCeeeecCCcHHHHHHHHHHHHhccCCceEEEE
Confidence 4566788888887644 22 33322233322 222334565689999999999998863 3444444444443 23332
Q ss_pred CcccccccCcccccccCCcccccccccCCCCCcEEEEecChhHHHHHH-HHHHhcCCceeEEeecCCCCCCCCCHHHHHH
Q 007327 137 ATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELY-NTIARVTDGIYEGIAIGGDVFPGSTLSDHIL 215 (608)
Q Consensus 137 Nc~Gi~~~~~~~l~~~~~~~~~~~p~~~~~~G~valvSQSG~l~~~~~-~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~ 215 (608)
.|.+...... .......++ .....|+..+++|.|+...... ..+.+.|++++.....++.+ ...+.++.+
T Consensus 382 ~~~~~~~~~~-~~a~~~~~~------~~~~~~k~~v~~~~gg~~~~~~~~~l~~~gip~~~~pe~a~~a--~~~l~~~~~ 452 (598)
T COG1042 382 VLPPASADPE-ETAEAIIRA------TAKKRGKPVVVSSMGGESSEKARRLLEEAGIPTYPTPERAVKA--LSALARYRR 452 (598)
T ss_pred ecCCCCCCch-hhhHHHHHh------hhhhCCCceEEEecCCcchHHHHHHhhhcCCCCccCchHHHHH--HHHHHHHHH
Confidence 2222211111 100000111 1236889999999999444333 45778899999999999999 999999999
Q ss_pred HhhcCCCccEEEEEEecCCccHHHHHHHHHhCCCCCCEEEEEeCCCccCcccccccCCCCCcCCCC
Q 007327 216 RFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGE 281 (608)
Q Consensus 216 ~l~~Dp~T~~I~ly~E~g~~~~~~f~~~~r~a~~~KPVvvlk~Grs~~g~~~~aa~sHtgalag~~ 281 (608)
+...+.+| .|.| +. +++.+.++++++-. +....+|+.. ..++
T Consensus 453 ~~~~~~~~----~~~~-~~----------------~~~~~~~~e~~~~l--~~~gi~~~~~-~~~~ 494 (598)
T COG1042 453 WLKKLRET----PVFE-GG----------------GGTTLDEPEAKELL--EAYGIPVPAT-IAST 494 (598)
T ss_pred HHHhhccC----cccc-cC----------------CccccCchhhhhHH--HHhcCccccc-ccCC
Confidence 99999999 2377 44 78888899999887 8888899887 4444
No 137
>PLN02256 arogenate dehydrogenase
Probab=86.73 E-value=3 Score=44.15 Aligned_cols=75 Identities=13% Similarity=0.191 Sum_probs=47.3
Q ss_pred CCcEEEEE-c-CCchHHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEec
Q 007327 9 KTTQALFY-N-YKQLPIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFS 86 (608)
Q Consensus 9 p~s~avv~-g-~~~~~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi~v 86 (608)
.++++||| | +++.+.+.+.+.|+ .|.+++ +.... .. ..-.|+..+.+.+++... +.|+++++|
T Consensus 36 ~~kI~IIG~G~mG~slA~~L~~~G~-------~V~~~d-~~~~~---~~--a~~~gv~~~~~~~e~~~~--~aDvVilav 100 (304)
T PLN02256 36 KLKIGIVGFGNFGQFLAKTFVKQGH-------TVLATS-RSDYS---DI--AAELGVSFFRDPDDFCEE--HPDVVLLCT 100 (304)
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCC-------EEEEEE-CccHH---HH--HHHcCCeeeCCHHHHhhC--CCCEEEEec
Confidence 45788886 3 33337777777653 255666 43320 00 112466678888886432 379999999
Q ss_pred cChhcHHHHHHHh
Q 007327 87 SFRSAAASSMAAL 99 (608)
Q Consensus 87 p~~~~~~~~le~~ 99 (608)
|+.. ...+++++
T Consensus 101 p~~~-~~~vl~~l 112 (304)
T PLN02256 101 SILS-TEAVLRSL 112 (304)
T ss_pred CHHH-HHHHHHhh
Confidence 9975 67777776
No 138
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=86.68 E-value=3.5 Score=44.77 Aligned_cols=119 Identities=13% Similarity=0.084 Sum_probs=62.1
Q ss_pred cEEEEEcCCch----HHHHHh-hCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEe
Q 007327 11 TQALFYNYKQL----PIQRML-DFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINF 85 (608)
Q Consensus 11 s~avv~g~~~~----~~~~l~-~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi~ 85 (608)
.+||| |++|. .++.|. +..|.. . .+........+|+...+.|.++ .+. ++.+. +...++|+++.+
T Consensus 2 ~Vavv-GATG~VG~~ll~~L~~e~~fp~--~--~~~~~ss~~s~g~~~~f~~~~~---~v~-~~~~~-~~~~~vDivffa 71 (366)
T TIGR01745 2 NVGLV-GWRGMVGSVLMQRMQEERDFDA--I--RPVFFSTSQLGQAAPSFGGTTG---TLQ-DAFDI-DALKALDIIITC 71 (366)
T ss_pred eEEEE-cCcCHHHHHHHHHHHhCCCCcc--c--cEEEEEchhhCCCcCCCCCCcc---eEE-cCccc-ccccCCCEEEEc
Confidence 58889 65555 666666 445542 1 2233331333333333434332 111 11110 011258999998
Q ss_pred ccChhcHHHHHHHhcCCCCCEEEEecC-CCC----------HHHHHHHHHHHHhCCCe-EEcCCcccc
Q 007327 86 SSFRSAAASSMAALKQPTIRVVAIIAE-GVP----------EADTKQLIAYARSNNKV-VIGPATVGG 141 (608)
Q Consensus 86 vp~~~~~~~~le~~~~~gv~~~viis~-Gf~----------e~~~~~l~~~a~~~g~r-vlGPNc~Gi 141 (608)
.+... .......+.++|.+.+||=.+ -|. |---+.+.. .+++|+. +.+|||.-+
T Consensus 72 ~g~~~-s~~~~p~~~~aG~~~~VIDnSSa~Rmd~dVPLVVPeVN~~~i~~-~~~~gi~~ianPNCst~ 137 (366)
T TIGR01745 72 QGGDY-TNEIYPKLRESGWQGYWIDAASSLRMKDDAVIILDPVNQDVITD-GLNNGIRTFVGGNCTVS 137 (366)
T ss_pred CCHHH-HHHHHHHHHhCCCCeEEEECChhhhcCCCCCEEeCCcCHHHHHh-HHhCCcCeEECcCHHHH
Confidence 98874 556666677788776666444 342 212233333 2357876 889999543
No 139
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=85.48 E-value=2.3 Score=45.26 Aligned_cols=94 Identities=18% Similarity=0.138 Sum_probs=55.8
Q ss_pred CCcEEEEE-cCC-chHHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEec
Q 007327 9 KTTQALFY-NYK-QLPIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFS 86 (608)
Q Consensus 9 p~s~avv~-g~~-~~~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi~v 86 (608)
=++|++|| |.. ..+.++|.+.|+ +++.+.. +..... ... .-.|+.+. +..++.. +.|+++++|
T Consensus 3 ~kkIgiIG~G~mG~AiA~~L~~sG~------~Viv~~~-~~~~~~-~~a---~~~Gv~~~-s~~ea~~---~ADiVvLaV 67 (314)
T TIGR00465 3 GKTVAIIGYGSQGHAQALNLRDSGL------NVIVGLR-KGGASW-KKA---TEDGFKVG-TVEEAIP---QADLIMNLL 67 (314)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHCCC------eEEEEEC-cChhhH-HHH---HHCCCEEC-CHHHHHh---cCCEEEEeC
Confidence 35688886 333 348899999864 2444443 322110 000 01355555 5777654 479999999
Q ss_pred cChhcHHHHHHHhcC-CCCCEEEEecCCCCHH
Q 007327 87 SFRSAAASSMAALKQ-PTIRVVAIIAEGVPEA 117 (608)
Q Consensus 87 p~~~~~~~~le~~~~-~gv~~~viis~Gf~e~ 117 (608)
|+......+++++.. ..-+.+|.++.||+-.
T Consensus 68 pp~~~~~~v~~ei~~~l~~g~iVs~aaG~~i~ 99 (314)
T TIGR00465 68 PDEVQHEVYEAEIQPLLKEGKTLGFSHGFNIH 99 (314)
T ss_pred CcHhHHHHHHHHHHhhCCCCcEEEEeCCccHh
Confidence 998335555655542 1123588899999864
No 140
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=84.73 E-value=4.9 Score=42.96 Aligned_cols=118 Identities=14% Similarity=0.158 Sum_probs=65.1
Q ss_pred CcEEEEEcCCch----HHHHHhhCcccCCCCCCcEEEEeCCCCCCcc-ccccCceeecccccCCHHHHhhcCCCccEEEE
Q 007327 10 TTQALFYNYKQL----PIQRMLDFDFLCGRETPSVAGIINPGAEGFQ-KLFFGQEEIAIPVHSTVEAACAAHPMADVFIN 84 (608)
Q Consensus 10 ~s~avv~g~~~~----~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~-~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi 84 (608)
..++|+ |++|. .++.|.+..|.. .. +...-+ ++..|++ ..|.+.+ .+++- ++.|... ..++|+++-
T Consensus 2 ~~Vavv-GATG~VG~~~~~~L~e~~f~~--~~-~~~~AS-~rSaG~~~~~f~~~~-~~v~~--~~~~~~~-~~~~Divf~ 72 (334)
T COG0136 2 LNVAVL-GATGAVGQVLLELLEERHFPF--EE-LVLLAS-ARSAGKKYIEFGGKS-IGVPE--DAADEFV-FSDVDIVFF 72 (334)
T ss_pred cEEEEE-eccchHHHHHHHHHHhcCCCc--ce-EEEEec-ccccCCccccccCcc-ccCcc--ccccccc-cccCCEEEE
Confidence 468888 55555 667777756642 21 222233 3344433 4454433 33333 2222211 125899999
Q ss_pred eccChhcHHHHHHHhcCCCCCEEEEe-cCCCC----------HHHHHHHHHHHHhCCCeEEcCCccc
Q 007327 85 FSSFRSAAASSMAALKQPTIRVVAII-AEGVP----------EADTKQLIAYARSNNKVVIGPATVG 140 (608)
Q Consensus 85 ~vp~~~~~~~~le~~~~~gv~~~vii-s~Gf~----------e~~~~~l~~~a~~~g~rvlGPNc~G 140 (608)
+.+... .....+.+.++| .+||= ||-|. |--.+.|.+.-+ .|.-|.+|||.-
T Consensus 73 ~ag~~~-s~~~~p~~~~~G--~~VIdnsSa~Rm~~DVPLVVPeVN~~~l~~~~~-rg~IianpNCst 135 (334)
T COG0136 73 AAGGSV-SKEVEPKAAEAG--CVVIDNSSAFRMDPDVPLVVPEVNPEHLIDYQK-RGFIIANPNCST 135 (334)
T ss_pred eCchHH-HHHHHHHHHHcC--CEEEeCCcccccCCCCCEecCCcCHHHHHhhhh-CCCEEECCChHH
Confidence 888875 466777777788 23332 34442 223455666555 456799999953
No 141
>PRK06349 homoserine dehydrogenase; Provisional
Probab=83.99 E-value=4.8 Score=44.61 Aligned_cols=71 Identities=13% Similarity=0.077 Sum_probs=46.1
Q ss_pred eecccccCCHHHHhhcCCCccEEEEeccChhcHHHHHHHhcCCCCCEEEEecCCCC--HHHHHHHHHHHHhCCCeEE
Q 007327 60 EIAIPVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVP--EADTKQLIAYARSNNKVVI 134 (608)
Q Consensus 60 v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~~~~le~~~~~gv~~~viis~Gf~--e~~~~~l~~~a~~~g~rvl 134 (608)
..+...|.+.+++... +++|++|.+++.........++|-++|.. +| |+-=+ ...-++|.++|+++|..+.
T Consensus 55 ~~~~~~~~d~~~ll~d-~~iDvVve~tg~~~~~~~~~~~aL~~Gkh-VV--taNK~~~a~~~~eL~~lA~~~gv~l~ 127 (426)
T PRK06349 55 LPGILLTTDPEELVND-PDIDIVVELMGGIEPARELILKALEAGKH-VV--TANKALLAVHGAELFAAAEEKGVDLY 127 (426)
T ss_pred CcccceeCCHHHHhhC-CCCCEEEECCCCchHHHHHHHHHHHCCCe-EE--EcCHHHHHHHHHHHHHHHHHcCCcEE
Confidence 3456788899998754 36999999887633223445444447743 43 33211 1245899999999998765
No 142
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=83.92 E-value=2.1 Score=45.05 Aligned_cols=63 Identities=14% Similarity=0.131 Sum_probs=37.8
Q ss_pred cccccCCHHHHhhcCCCccEEEEeccChhcHHHHHHHhcCC-CC-CEEEEecCCCCHHHHHHHHHHHHh
Q 007327 62 AIPVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQP-TI-RVVAIIAEGVPEADTKQLIAYARS 128 (608)
Q Consensus 62 G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~~~~le~~~~~-gv-~~~viis~Gf~e~~~~~l~~~a~~ 128 (608)
+.....+.+++.. +.|+++++||... +..+++.+... .- +.+|.++.|+.....+++.+..++
T Consensus 58 ~~~~~~~~~~~~~---~~D~vi~~v~~~~-~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~ 122 (325)
T PRK00094 58 NLRATTDLAEALA---DADLILVAVPSQA-LREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEE 122 (325)
T ss_pred CeEEeCCHHHHHh---CCCEEEEeCCHHH-HHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHH
Confidence 4555667776654 4799999999974 77777777631 11 234445558875423333344433
No 143
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=83.78 E-value=1.6 Score=43.84 Aligned_cols=51 Identities=24% Similarity=0.280 Sum_probs=37.8
Q ss_pred CHHHHHHHhhcCCCccEEEEEEecCCc----cHHHHHHHHHhCC-CCCCEEEEEeCC
Q 007327 209 TLSDHILRFNNIPQVKMMVVLGELGGR----DEYSLVEALKQGK-VNKPVVAWVSGT 260 (608)
Q Consensus 209 ~~~d~l~~l~~Dp~T~~I~ly~E~g~~----~~~~f~~~~r~a~-~~KPVvvlk~Gr 260 (608)
++.+.|+.+.+||++|+|+|.++ +.. +-+++.+++++.+ .+||||++-.|-
T Consensus 33 ~l~~~l~~a~~d~~ik~vvL~~~-s~gg~~~~~~el~~~i~~~~~~~kpVia~~~~~ 88 (222)
T cd07018 33 DLLEALEKAAEDDRIKGIVLDLD-GLSGGLAKLEELRQALERFRASGKPVIAYADGY 88 (222)
T ss_pred HHHHHHHHHhcCCCeEEEEEECC-CCCCCHHHHHHHHHHHHHHHHhCCeEEEEeCCC
Confidence 45667777889999999999998 433 2345666666655 689999997653
No 144
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=83.40 E-value=2.5 Score=45.31 Aligned_cols=51 Identities=14% Similarity=0.153 Sum_probs=34.6
Q ss_pred ccccCCHHHHhhcCCCccEEEEeccChhcHHHHHHHhcCC-CCC-EEEEecCCCCHH
Q 007327 63 IPVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQP-TIR-VVAIIAEGVPEA 117 (608)
Q Consensus 63 ~~~y~sv~~i~~~~p~vDlavi~vp~~~~~~~~le~~~~~-gv~-~~viis~Gf~e~ 117 (608)
+.+..+.+++.+ +.|+++++||+.. ..++++++... +-+ .+|.++-|+...
T Consensus 65 i~~t~d~~~a~~---~aDlVilavps~~-~~~vl~~i~~~l~~~~~vIsl~kGi~~~ 117 (341)
T PRK12439 65 LRATTDFAEAAN---CADVVVMGVPSHG-FRGVLTELAKELRPWVPVVSLVKGLEQG 117 (341)
T ss_pred eEEECCHHHHHh---cCCEEEEEeCHHH-HHHHHHHHHhhcCCCCEEEEEEeCCcCC
Confidence 445566666544 4799999999876 78888887632 112 366677799753
No 145
>PLN03139 formate dehydrogenase; Provisional
Probab=83.33 E-value=8.1 Score=42.37 Aligned_cols=111 Identities=12% Similarity=0.038 Sum_probs=67.9
Q ss_pred CCCCcEEEEE-cCCch-HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEE
Q 007327 7 FSKTTQALFY-NYKQL-PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFIN 84 (608)
Q Consensus 7 ~~p~s~avv~-g~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi 84 (608)
+.=+++.||| |.-|+ +.+.+..+|+. |.+++ +.... ... ..-.|+..+.+++|+.+ +.|++++
T Consensus 197 L~gktVGIVG~G~IG~~vA~~L~afG~~-------V~~~d-~~~~~-~~~---~~~~g~~~~~~l~ell~---~sDvV~l 261 (386)
T PLN03139 197 LEGKTVGTVGAGRIGRLLLQRLKPFNCN-------LLYHD-RLKMD-PEL---EKETGAKFEEDLDAMLP---KCDVVVI 261 (386)
T ss_pred CCCCEEEEEeecHHHHHHHHHHHHCCCE-------EEEEC-CCCcc-hhh---HhhcCceecCCHHHHHh---hCCEEEE
Confidence 4556888886 43344 88888877643 44455 42110 000 12346667779999876 4799999
Q ss_pred eccChhcHHHHH--HHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCe
Q 007327 85 FSSFRSAAASSM--AALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKV 132 (608)
Q Consensus 85 ~vp~~~~~~~~l--e~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~r 132 (608)
++|.......++ +.+...+-..++|-++--+-.+++.|.+..++..++
T Consensus 262 ~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~ 311 (386)
T PLN03139 262 NTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIG 311 (386)
T ss_pred eCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCce
Confidence 999755444443 223333344555555544445899999998887665
No 146
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=83.14 E-value=2.7 Score=42.00 Aligned_cols=53 Identities=23% Similarity=0.410 Sum_probs=40.3
Q ss_pred CCHHHHHHHhhcCCCccEEEEEEecCCc-c---HHHHHHHHHhCCCCCCEEEEEeCCC
Q 007327 208 STLSDHILRFNNIPQVKMMVVLGELGGR-D---EYSLVEALKQGKVNKPVVAWVSGTC 261 (608)
Q Consensus 208 v~~~d~l~~l~~Dp~T~~I~ly~E~g~~-~---~~~f~~~~r~a~~~KPVvvlk~Grs 261 (608)
-++.+.|+.+.+||++++|++.++ +.. + .+++.+++++.+.+||||++--|-.
T Consensus 28 ~~l~~~l~~a~~d~~i~~Vvl~~~-s~gg~~~~~~~l~~~l~~~~~~KpViA~v~g~a 84 (214)
T cd07022 28 EGIAAAIRAALADPDVRAIVLDID-SPGGEVAGVFELADAIRAARAGKPIVAFVNGLA 84 (214)
T ss_pred HHHHHHHHHHhhCCCCcEEEEEEe-CCCCcHHHHHHHHHHHHHHhcCCCEEEEECCch
Confidence 456778888899999999999998 543 2 3456667776545899999998753
No 147
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=83.12 E-value=6.4 Score=42.87 Aligned_cols=117 Identities=17% Similarity=0.125 Sum_probs=63.2
Q ss_pred cEEEEEc--CCch-HHHHHhhC-cccCCCCCCcEEEEeCCCCCCccccccCceeecccccC--CHHHHhhcCCCccEEEE
Q 007327 11 TQALFYN--YKQL-PIQRMLDF-DFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHS--TVEAACAAHPMADVFIN 84 (608)
Q Consensus 11 s~avv~g--~~~~-~~~~l~~~-~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~--sv~~i~~~~p~vDlavi 84 (608)
.+||||+ +.|+ +++.++++ .|.+ + +++. ......+++...|.|.+. .++. +..+. . ++|+++.
T Consensus 3 ~VAIVGATG~vG~ell~llL~~~~f~~--~-~l~~-~ss~~sg~~~~~f~g~~~---~v~~~~~~~~~-~---~~Divf~ 71 (369)
T PRK06598 3 KVGFVGWRGMVGSVLMQRMVEENDFDL--I-EPVF-FSTSQAGGAAPSFGGKEG---TLQDAFDIDAL-K---KLDIIIT 71 (369)
T ss_pred EEEEEeCCCHHHHHHHHHHHhCCCCCc--C-cEEE-ecchhhCCcccccCCCcc---eEEecCChhHh-c---CCCEEEE
Confidence 5889952 3333 67645554 3321 1 1333 332333333333444221 3332 22332 2 4899999
Q ss_pred eccChhcHHHHHHHhcCCCCCEEEE-ecCCC----------CHHHHHHHHHHHHhCCC-eEEcCCccc
Q 007327 85 FSSFRSAAASSMAALKQPTIRVVAI-IAEGV----------PEADTKQLIAYARSNNK-VVIGPATVG 140 (608)
Q Consensus 85 ~vp~~~~~~~~le~~~~~gv~~~vi-is~Gf----------~e~~~~~l~~~a~~~g~-rvlGPNc~G 140 (608)
++|... .......+.++|++.+|| .|+-| ||--.++|.. ..+.|+ .|..|||.=
T Consensus 72 a~~~~~-s~~~~~~~~~aG~~~~VID~Ss~fR~~~dvplvvPEvN~e~i~~-~~~~g~~iIanPnC~t 137 (369)
T PRK06598 72 CQGGDY-TNEVYPKLRAAGWQGYWIDAASTLRMKDDAIIILDPVNRDVIDD-ALANGVKTFVGGNCTV 137 (369)
T ss_pred CCCHHH-HHHHHHHHHhCCCCeEEEECChHHhCCCCCcEEcCCcCHHHHHh-hhhcCCCEEEcCChHH
Confidence 998874 566667676688875454 34434 3433455554 335676 588999953
No 148
>PLN02591 tryptophan synthase
Probab=82.31 E-value=17 Score=37.41 Aligned_cols=40 Identities=23% Similarity=0.252 Sum_probs=32.9
Q ss_pred cHHHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCe
Q 007327 91 AAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKV 132 (608)
Q Consensus 91 ~~~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~r 132 (608)
-++..++.|.+.|+.+++|. ..+-+..+++.+.|+++|+.
T Consensus 94 G~~~F~~~~~~aGv~Gviip--DLP~ee~~~~~~~~~~~gl~ 133 (250)
T PLN02591 94 GIDKFMATIKEAGVHGLVVP--DLPLEETEALRAEAAKNGIE 133 (250)
T ss_pred HHHHHHHHHHHcCCCEEEeC--CCCHHHHHHHHHHHHHcCCe
Confidence 35778999999999999985 45656678899999999975
No 149
>PRK07574 formate dehydrogenase; Provisional
Probab=82.30 E-value=6.4 Score=43.13 Aligned_cols=110 Identities=11% Similarity=0.091 Sum_probs=66.0
Q ss_pred CCCcEEEEE-cCCch-HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEe
Q 007327 8 SKTTQALFY-NYKQL-PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINF 85 (608)
Q Consensus 8 ~p~s~avv~-g~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi~ 85 (608)
.=+++.||| |.-|+ +.+++..+|+. |.+++ +.... ... ..-.|+..|.+++|+.. +.|+++++
T Consensus 191 ~gktVGIvG~G~IG~~vA~~l~~fG~~-------V~~~d-r~~~~--~~~--~~~~g~~~~~~l~ell~---~aDvV~l~ 255 (385)
T PRK07574 191 EGMTVGIVGAGRIGLAVLRRLKPFDVK-------LHYTD-RHRLP--EEV--EQELGLTYHVSFDSLVS---VCDVVTIH 255 (385)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCE-------EEEEC-CCCCc--hhh--HhhcCceecCCHHHHhh---cCCEEEEc
Confidence 345788885 33354 77888888653 55666 43210 000 11235666889999876 47999999
Q ss_pred ccChhcHHHHHH--HhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCe
Q 007327 86 SSFRSAAASSMA--ALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKV 132 (608)
Q Consensus 86 vp~~~~~~~~le--~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~r 132 (608)
+|-......++. .....+-..++|-++-=.-.+++.|.+..++..++
T Consensus 256 lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~ 304 (385)
T PRK07574 256 CPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLA 304 (385)
T ss_pred CCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCcc
Confidence 997654444332 22222223455555544445899999988887665
No 150
>PLN02712 arogenate dehydrogenase
Probab=81.18 E-value=5.3 Score=46.91 Aligned_cols=78 Identities=15% Similarity=0.185 Sum_probs=50.0
Q ss_pred CCCCcEEEEE-c-CCchHHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEE
Q 007327 7 FSKTTQALFY-N-YKQLPIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFIN 84 (608)
Q Consensus 7 ~~p~s~avv~-g-~~~~~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi 84 (608)
+.+++|+||| | +++.+.+.+.+.|+. |.+++ +.... .. ..-.|+..+.+.+++... ..|++++
T Consensus 367 ~~~~kIgIIGlG~mG~slA~~L~~~G~~-------V~~~d-r~~~~--~~---a~~~Gv~~~~~~~el~~~--~aDvVIL 431 (667)
T PLN02712 367 GSKLKIAIVGFGNFGQFLAKTMVKQGHT-------VLAYS-RSDYS--DE---AQKLGVSYFSDADDLCEE--HPEVILL 431 (667)
T ss_pred CCCCEEEEEecCHHHHHHHHHHHHCcCE-------EEEEE-CChHH--HH---HHHcCCeEeCCHHHHHhc--CCCEEEE
Confidence 4778999996 3 333477888877642 55666 43221 00 012456678888886542 3699999
Q ss_pred eccChhcHHHHHHHhc
Q 007327 85 FSSFRSAAASSMAALK 100 (608)
Q Consensus 85 ~vp~~~~~~~~le~~~ 100 (608)
+||... ...++++..
T Consensus 432 avP~~~-~~~vi~~l~ 446 (667)
T PLN02712 432 CTSILS-TEKVLKSLP 446 (667)
T ss_pred CCChHH-HHHHHHHHH
Confidence 999875 677777765
No 151
>PLN02858 fructose-bisphosphate aldolase
Probab=81.12 E-value=6.8 Score=49.81 Aligned_cols=117 Identities=14% Similarity=0.062 Sum_probs=70.1
Q ss_pred CCcEEEEE-cCCch-HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEec
Q 007327 9 KTTQALFY-NYKQL-PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFS 86 (608)
Q Consensus 9 p~s~avv~-g~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi~v 86 (608)
.+.|.+|| |..|. +.++|++.||. |.+.| +... ....+ .-.|.....|..++.. ..|+++++|
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~G~~-------V~v~d-r~~~-~~~~l---~~~Ga~~~~s~~e~~~---~aDvVi~~V 388 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKSNFS-------VCGYD-VYKP-TLVRF---ENAGGLAGNSPAEVAK---DVDVLVIMV 388 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHCCCE-------EEEEe-CCHH-HHHHH---HHcCCeecCCHHHHHh---cCCEEEEec
Confidence 36788885 43444 88999999874 44555 3221 00011 0124455678888765 479999999
Q ss_pred cChhcHHHHHH----HhcCCCCCEEEEecCCCCHHHHHHHHHHHHh--CCCe-EEcCCccc
Q 007327 87 SFRSAAASSMA----ALKQPTIRVVAIIAEGVPEADTKQLIAYARS--NNKV-VIGPATVG 140 (608)
Q Consensus 87 p~~~~~~~~le----~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~--~g~r-vlGPNc~G 140 (608)
|....+.+++. .+....-..++|..+-......+++.+.+++ +|++ +=.|=+-|
T Consensus 389 ~~~~~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAPVsGg 449 (1378)
T PLN02858 389 ANEVQAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAPVSGG 449 (1378)
T ss_pred CChHHHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEccCCCC
Confidence 96665666652 1221122345555555555667778888887 7887 44564333
No 152
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=81.03 E-value=7 Score=42.98 Aligned_cols=102 Identities=19% Similarity=0.187 Sum_probs=55.9
Q ss_pred CcEEEEE-cCCch-HHHHHhhCcccCCCCCCcEEEEeCCCCCCcccccc-C---------cee------ec-ccccCCHH
Q 007327 10 TTQALFY-NYKQL-PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFF-G---------QEE------IA-IPVHSTVE 70 (608)
Q Consensus 10 ~s~avv~-g~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~-g---------~ev------~G-~~~y~sv~ 70 (608)
++|+||| |.-|. ....+.+.||. |.+++ +... ....+. | ++. .| +....+.+
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~-------V~~~d-~~~~-~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~ 71 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHE-------VTGVD-IDQE-KVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYE 71 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCe-------EEEEE-CCHH-HHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHH
Confidence 3688886 45555 66677777653 55665 3211 000010 0 000 24 55566777
Q ss_pred HHhhcCCCccEEEEeccChhc---------HHHHHHHhcC-CCCCEEEEecCCCCHHHHHHHH
Q 007327 71 AACAAHPMADVFINFSSFRSA---------AASSMAALKQ-PTIRVVAIIAEGVPEADTKQLI 123 (608)
Q Consensus 71 ~i~~~~p~vDlavi~vp~~~~---------~~~~le~~~~-~gv~~~viis~Gf~e~~~~~l~ 123 (608)
++.. +.|+++++||.... +..+.+...+ ..-+.+||..|.++....+++.
T Consensus 72 ~~~~---~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~ 131 (411)
T TIGR03026 72 DAIR---DADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVV 131 (411)
T ss_pred HHHh---hCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHH
Confidence 7554 47999999997632 4455555442 1223567777777665445554
No 153
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=81.02 E-value=11 Score=35.16 Aligned_cols=61 Identities=15% Similarity=0.095 Sum_probs=44.1
Q ss_pred CccEEEEec---cChhcHHHHHHHhcCCCCCEEEEecCC---CCHHHHHHHHHHHHhCCC-eEEcCCc
Q 007327 78 MADVFINFS---SFRSAAASSMAALKQPTIRVVAIIAEG---VPEADTKQLIAYARSNNK-VVIGPAT 138 (608)
Q Consensus 78 ~vDlavi~v---p~~~~~~~~le~~~~~gv~~~viis~G---f~e~~~~~l~~~a~~~g~-rvlGPNc 138 (608)
++|++.++. ........+++.+.++|.+...++-+| +++.++.+..+.+++.|+ ++.||.+
T Consensus 52 ~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~~vivGG~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt 119 (134)
T TIGR01501 52 KADAILVSSLYGHGEIDCKGLRQKCDEAGLEGILLYVGGNLVVGKQDFPDVEKRFKEMGFDRVFAPGT 119 (134)
T ss_pred CCCEEEEecccccCHHHHHHHHHHHHHCCCCCCEEEecCCcCcChhhhHHHHHHHHHcCCCEEECcCC
Confidence 478766543 222224678888988998777777777 577788888888899997 5888876
No 154
>COG1810 Uncharacterized protein conserved in archaea [Function unknown]
Probab=80.52 E-value=22 Score=35.81 Aligned_cols=108 Identities=15% Similarity=0.141 Sum_probs=68.5
Q ss_pred cEEEEE-c-CCchHHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeeccccc-CCHHHHhhcCCCccEEEEe-c
Q 007327 11 TQALFY-N-YKQLPIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVH-STVEAACAAHPMADVFINF-S 86 (608)
Q Consensus 11 s~avv~-g-~~~~~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y-~sv~~i~~~~p~vDlavi~-v 86 (608)
.++++. | ++.|...|+...+|. ...|+...||... +-| ..-++.++..|+.|++|-. +
T Consensus 3 ki~vlt~g~yG~R~~~nl~~~~f~----~~~v~v~~~Pe~~--------------~~fie~P~~~Lp~~~e~Di~va~~l 64 (224)
T COG1810 3 KILVLTDGEYGKRAVNNLACKGFK----NQFVAVKEYPEEL--------------PDFIEEPEDLLPKLPEADIVVAYGL 64 (224)
T ss_pred EEEEEeeccchHHHHHhHhhhccc----cceEEEEeccccc--------------cchhhCHHHhcCCCCCCCEEEEecc
Confidence 455554 3 666699999987764 3567666655222 111 1123444443578998865 4
Q ss_pred cChhcHHHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCeEEcCCc
Q 007327 87 SFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPAT 138 (608)
Q Consensus 87 p~~~~~~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~rvlGPNc 138 (608)
.++ ...++.+.+...|++++|+ .++=++-..++|.+.+.+.|+.+.=|.-
T Consensus 65 HPD-l~~~L~e~~~~~~~~alIv-p~~~~~g~rkqL~~~~~~~g~e~~~p~p 114 (224)
T COG1810 65 HPD-LLLALPEKAAEGGVKALIV-PAEPPEGLRKQLKEFCEELGVEFEAPEP 114 (224)
T ss_pred Ccc-HHHHHHHHHHhCCccEEEE-ecCCChhHHHHHHHHhhhcceeeecCCc
Confidence 444 3445555555577876655 6666667889999999999998876654
No 155
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=79.65 E-value=6.6 Score=40.16 Aligned_cols=96 Identities=19% Similarity=0.143 Sum_probs=56.9
Q ss_pred CcEEEEE-cCCch-HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecc
Q 007327 10 TTQALFY-NYKQL-PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSS 87 (608)
Q Consensus 10 ~s~avv~-g~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi~vp 87 (608)
++++||| |.-|. +.+.+.+.++. ...|..++ +.... ...+ .+-.|+.+..+..++.+ +.|++++++|
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~----~~~v~v~~-r~~~~-~~~~--~~~~g~~~~~~~~~~~~---~advVil~v~ 71 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVP----AKDIIVSD-PSPEK-RAAL--AEEYGVRAATDNQEAAQ---EADVVVLAVK 71 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCC----cceEEEEc-CCHHH-HHHH--HHhcCCeecCChHHHHh---cCCEEEEEcC
Confidence 4688886 33333 77777776521 11355555 42211 0000 01125667778877654 4799999999
Q ss_pred ChhcHHHHHHHhcCCCCCEEEEecCCCCHH
Q 007327 88 FRSAAASSMAALKQPTIRVVAIIAEGVPEA 117 (608)
Q Consensus 88 ~~~~~~~~le~~~~~gv~~~viis~Gf~e~ 117 (608)
+.. +.++++.+...-=+.+|-+++|.+..
T Consensus 72 ~~~-~~~v~~~l~~~~~~~vvs~~~gi~~~ 100 (267)
T PRK11880 72 PQV-MEEVLSELKGQLDKLVVSIAAGVTLA 100 (267)
T ss_pred HHH-HHHHHHHHHhhcCCEEEEecCCCCHH
Confidence 975 77888887643214566677888753
No 156
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=79.49 E-value=12 Score=35.96 Aligned_cols=87 Identities=13% Similarity=0.007 Sum_probs=54.8
Q ss_pred EEEEEcCCch---HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEeccC
Q 007327 12 QALFYNYKQL---PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSF 88 (608)
Q Consensus 12 ~avv~g~~~~---~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi~vp~ 88 (608)
++|+ |+++. +++.|.+.+| +.++.++ ... ...+..+.|+|.+.+.+++....++.+.++++++.
T Consensus 2 ~~I~-Gag~~g~~~~~~l~~~g~------~vvgfid-~~~-----~~~~~~i~g~pvlg~~~~l~~~~~~~~~~iiai~~ 68 (201)
T TIGR03570 2 LVII-GAGGHGRVVADIAEDSGW------EIVGFLD-DNP-----ALQGTSVDGLPVLGGDEDLLRYPPDEVDLVVAIGD 68 (201)
T ss_pred EEEE-cCCHHHHHHHHHHHhCCC------EEEEEEc-CCc-----cccCcccCCccEECCHHHHhhhcccccEEEEEcCC
Confidence 3455 55443 6677766665 3566554 211 11246799999998887754322246888999976
Q ss_pred hhcHHHHHHHhcCCCCCEEEEec
Q 007327 89 RSAAASSMAALKQPTIRVVAIIA 111 (608)
Q Consensus 89 ~~~~~~~le~~~~~gv~~~viis 111 (608)
......+++.+.+.+++...++.
T Consensus 69 ~~~~~~i~~~l~~~g~~~~~~i~ 91 (201)
T TIGR03570 69 NKLRRRLFEKLKAKGYRFATLIH 91 (201)
T ss_pred HHHHHHHHHHHHhCCCcceEEec
Confidence 55567788888777766555443
No 157
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=79.45 E-value=11 Score=34.83 Aligned_cols=61 Identities=13% Similarity=0.082 Sum_probs=43.2
Q ss_pred CccEEEEec---cChhcHHHHHHHhcCCCCCEEEEecCCC---CHHHHHHHHHHHHhCCC-eEEcCCc
Q 007327 78 MADVFINFS---SFRSAAASSMAALKQPTIRVVAIIAEGV---PEADTKQLIAYARSNNK-VVIGPAT 138 (608)
Q Consensus 78 ~vDlavi~v---p~~~~~~~~le~~~~~gv~~~viis~Gf---~e~~~~~l~~~a~~~g~-rvlGPNc 138 (608)
++|++.++. ..-.....+++.+.++|++.+.|+-+|- ++.+.++-.+..++.|+ ++.||.+
T Consensus 50 ~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~vivGG~~~i~~~d~~~~~~~L~~~Gv~~vf~pgt 117 (128)
T cd02072 50 DADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLYVGGNLVVGKQDFEDVEKRFKEMGFDRVFAPGT 117 (128)
T ss_pred CCCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEEEECCCCCChhhhHHHHHHHHHcCCCEEECcCC
Confidence 478876654 2222346788899999986676666664 67777777777888998 5899865
No 158
>PRK13243 glyoxylate reductase; Reviewed
Probab=79.25 E-value=8.5 Score=41.25 Aligned_cols=109 Identities=11% Similarity=0.012 Sum_probs=63.8
Q ss_pred CCCCcEEEEE-cCCch-HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEE
Q 007327 7 FSKTTQALFY-NYKQL-PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFIN 84 (608)
Q Consensus 7 ~~p~s~avv~-g~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi 84 (608)
++=+++.||| |.-|+ +.+.+..+|+. |.+++ |...... .+..|.+ +.+++|+.+ +.|++++
T Consensus 148 L~gktvgIiG~G~IG~~vA~~l~~~G~~-------V~~~d-~~~~~~~-----~~~~~~~-~~~l~ell~---~aDiV~l 210 (333)
T PRK13243 148 VYGKTIGIIGFGRIGQAVARRAKGFGMR-------ILYYS-RTRKPEA-----EKELGAE-YRPLEELLR---ESDFVSL 210 (333)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCE-------EEEEC-CCCChhh-----HHHcCCE-ecCHHHHHh---hCCEEEE
Confidence 4456888885 43344 77888877643 55666 4222100 1123443 568888876 4799999
Q ss_pred eccChhcHHHHH--HHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCe
Q 007327 85 FSSFRSAAASSM--AALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKV 132 (608)
Q Consensus 85 ~vp~~~~~~~~l--e~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~r 132 (608)
++|.......++ +.+...+-..++|-++--+-.+++.|.+..++..++
T Consensus 211 ~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~ 260 (333)
T PRK13243 211 HVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIA 260 (333)
T ss_pred eCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeE
Confidence 999754333333 233333334455555443444888898888776544
No 159
>PLN02858 fructose-bisphosphate aldolase
Probab=79.08 E-value=9.5 Score=48.55 Aligned_cols=111 Identities=10% Similarity=0.041 Sum_probs=70.2
Q ss_pred CCcEEEEE-cCCch-HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEec
Q 007327 9 KTTQALFY-NYKQL-PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFS 86 (608)
Q Consensus 9 p~s~avv~-g~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi~v 86 (608)
-++|.+|| |..|. ..+||++.||. |...| .... ....+ .-.|.....|..|+.. ..|++++++
T Consensus 4 ~~~IGfIGLG~MG~~mA~~L~~~G~~-------v~v~d-r~~~-~~~~l---~~~Ga~~~~s~~e~a~---~advVi~~l 68 (1378)
T PLN02858 4 AGVVGFVGLDSLSFELASSLLRSGFK-------VQAFE-ISTP-LMEKF---CELGGHRCDSPAEAAK---DAAALVVVL 68 (1378)
T ss_pred CCeEEEEchhHHHHHHHHHHHHCCCe-------EEEEc-CCHH-HHHHH---HHcCCeecCCHHHHHh---cCCEEEEEc
Confidence 35688886 54444 88999999875 44444 3211 00111 1136677899999865 479999999
Q ss_pred cChhcHHHHHH---HhcC-CCCCEEEEecCCCCHHHHHHHHHHHHhCC--CeEE
Q 007327 87 SFRSAAASSMA---ALKQ-PTIRVVAIIAEGVPEADTKQLIAYARSNN--KVVI 134 (608)
Q Consensus 87 p~~~~~~~~le---~~~~-~gv~~~viis~Gf~e~~~~~l~~~a~~~g--~rvl 134 (608)
|....+.+++. .+.+ ..-+.++|-.+=......+++.+.+++.| ++++
T Consensus 69 ~~~~~v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~l 122 (1378)
T PLN02858 69 SHPDQVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLV 122 (1378)
T ss_pred CChHHHHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEE
Confidence 99877777762 2221 11234555555566667788888888888 6644
No 160
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=79.02 E-value=7.5 Score=41.30 Aligned_cols=107 Identities=11% Similarity=0.037 Sum_probs=61.7
Q ss_pred CCCcEEEEE-cCCch-HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEe
Q 007327 8 SKTTQALFY-NYKQL-PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINF 85 (608)
Q Consensus 8 ~p~s~avv~-g~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi~ 85 (608)
.=+++.||| |.-|+ +.+++..+|+. |.+++ +..... ..+.....+.+++++.+ +.|.++++
T Consensus 135 ~g~tvgIvG~G~IG~~vA~~l~afG~~-------V~~~~-~~~~~~------~~~~~~~~~~~l~e~l~---~aDvvv~~ 197 (312)
T PRK15469 135 EDFTIGILGAGVLGSKVAQSLQTWGFP-------LRCWS-RSRKSW------PGVQSFAGREELSAFLS---QTRVLINL 197 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCE-------EEEEe-CCCCCC------CCceeecccccHHHHHh---cCCEEEEC
Confidence 446788885 33344 78888888764 55676 422100 01111123567888776 47999999
Q ss_pred ccChhcHHHHHH--HhcCCCCCEEEEecCCCCHH-HHHHHHHHHHhCCCe
Q 007327 86 SSFRSAAASSMA--ALKQPTIRVVAIIAEGVPEA-DTKQLIAYARSNNKV 132 (608)
Q Consensus 86 vp~~~~~~~~le--~~~~~gv~~~viis~Gf~e~-~~~~l~~~a~~~g~r 132 (608)
+|.......++. ...+.+ +.++++-.|=++. +++.|.+..++..++
T Consensus 198 lPlt~~T~~li~~~~l~~mk-~ga~lIN~aRG~vVde~aL~~aL~~g~i~ 246 (312)
T PRK15469 198 LPNTPETVGIINQQLLEQLP-DGAYLLNLARGVHVVEDDLLAALDSGKVK 246 (312)
T ss_pred CCCCHHHHHHhHHHHHhcCC-CCcEEEECCCccccCHHHHHHHHhcCCee
Confidence 997654444432 222222 2334444444443 788898888887664
No 161
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=78.91 E-value=8.5 Score=41.15 Aligned_cols=109 Identities=9% Similarity=0.017 Sum_probs=63.1
Q ss_pred CCcEEEEEc-CCch-HHHHHhhCcccCCCCCCcEEEEeCC------CCCCcccccc-Cce-eecccccCCHHHHhhcCCC
Q 007327 9 KTTQALFYN-YKQL-PIQRMLDFDFLCGRETPSVAGIINP------GAEGFQKLFF-GQE-EIAIPVHSTVEAACAAHPM 78 (608)
Q Consensus 9 p~s~avv~g-~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p------~~~~~~~~~~-g~e-v~G~~~y~sv~~i~~~~p~ 78 (608)
+++|+|+|+ .-|. +.+.+.+.|+. -.+++.+ | ...+.+..|+ |-. -.++.+..+++++.+ .
T Consensus 1 ~~kI~ViGaGswGTALA~~la~ng~~-----V~lw~r~-~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~---~ 71 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARNGHE-----VRLWGRD-EEIVAEINETRENPKYLPGILLPPNLKATTDLAEALD---G 71 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhcCCe-----eEEEecC-HHHHHHHHhcCcCccccCCccCCcccccccCHHHHHh---c
Confidence 467899973 3344 55556666543 2455643 2 0111122222 212 245778889999876 3
Q ss_pred ccEEEEeccChhcHHHHHHHhc---CCCCCEEEEecCCCCHHHHHHHHHHHHh
Q 007327 79 ADVFINFSSFRSAAASSMAALK---QPTIRVVAIIAEGVPEADTKQLIAYARS 128 (608)
Q Consensus 79 vDlavi~vp~~~~~~~~le~~~---~~gv~~~viis~Gf~e~~~~~l~~~a~~ 128 (608)
.|+.|+.||... ..++++... .++. .+|..|=||-...-+.+.++.++
T Consensus 72 ad~iv~avPs~~-~r~v~~~l~~~l~~~~-~iv~~sKGie~~t~~l~seii~e 122 (329)
T COG0240 72 ADIIVIAVPSQA-LREVLRQLKPLLLKDA-IIVSATKGLEPETGRLLSEIIEE 122 (329)
T ss_pred CCEEEEECChHH-HHHHHHHHhhhccCCC-eEEEEeccccCCCcchHHHHHHH
Confidence 799999999976 788888764 2333 34455668866544444444443
No 162
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=78.56 E-value=31 Score=35.66 Aligned_cols=73 Identities=16% Similarity=0.231 Sum_probs=47.1
Q ss_pred cccCCHHHHhhcCCCccEEEEe-cc--ChhcHHHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCe---EEcCC
Q 007327 64 PVHSTVEAACAAHPMADVFINF-SS--FRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKV---VIGPA 137 (608)
Q Consensus 64 ~~y~sv~~i~~~~p~vDlavi~-vp--~~~~~~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~r---vlGPN 137 (608)
.++.-+.++-+..+++.+++.. .. -+.-++..++.|.+.|+.+++|. ..+-...+++++.++++|+. ++-||
T Consensus 75 ~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviip--DLp~ee~~~~~~~~~~~gl~~I~lvap~ 152 (258)
T PRK13111 75 DVFELVREIREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIP--DLPPEEAEELRAAAKKHGLDLIFLVAPT 152 (258)
T ss_pred HHHHHHHHHHhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEEC--CCCHHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 3466666654222234443321 11 12236788999999999999983 56666778999999999975 34555
Q ss_pred c
Q 007327 138 T 138 (608)
Q Consensus 138 c 138 (608)
+
T Consensus 153 t 153 (258)
T PRK13111 153 T 153 (258)
T ss_pred C
Confidence 4
No 163
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=78.13 E-value=5 Score=39.84 Aligned_cols=52 Identities=27% Similarity=0.340 Sum_probs=39.5
Q ss_pred HHHHHHHhhcCCCccEEEEEEecCC-c---cHHHHHHHHHhCCCCCCEEEEEeCCCc
Q 007327 210 LSDHILRFNNIPQVKMMVVLGELGG-R---DEYSLVEALKQGKVNKPVVAWVSGTCA 262 (608)
Q Consensus 210 ~~d~l~~l~~Dp~T~~I~ly~E~g~-~---~~~~f~~~~r~a~~~KPVvvlk~Grs~ 262 (608)
+.+.|+-+.+||++++|++++. +. . ...++.+++++.+.+|||+++--|...
T Consensus 18 l~~~l~~a~~d~~i~~vvl~~~-s~Gg~~~~~~~l~~~i~~~~~~kpvia~v~g~a~ 73 (207)
T TIGR00706 18 FDKKIKRIKDDKSIKALLLRIN-SPGGTVVASEEIYEKLKKLKAKKPVVASMGGVAA 73 (207)
T ss_pred HHHHHHHHhhCCCccEEEEEec-CCCCCHHHHHHHHHHHHHhcCCCCEEEEECCccc
Confidence 4666777888999999999998 43 2 335666777765557999999987664
No 164
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=78.02 E-value=9 Score=39.71 Aligned_cols=101 Identities=8% Similarity=0.074 Sum_probs=55.4
Q ss_pred CcEEEEE-cCCc-hHHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecc
Q 007327 10 TTQALFY-NYKQ-LPIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSS 87 (608)
Q Consensus 10 ~s~avv~-g~~~-~~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi~vp 87 (608)
++|++|| |..| .+.+.+++.|.. ....|...+ +........+ .+-.|+....+..++.. +.|++|++||
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~g~~---~~~~v~v~~-r~~~~~~~~l--~~~~g~~~~~~~~e~~~---~aDvVilav~ 74 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHANVV---KGEQITVSN-RSNETRLQEL--HQKYGVKGTHNKKELLT---DANILFLAMK 74 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCC---CcceEEEEC-CCCHHHHHHH--HHhcCceEeCCHHHHHh---cCCEEEEEeC
Confidence 5788885 3333 388888877521 112344454 3211000111 01135666778777654 4799999999
Q ss_pred ChhcHHHHHHHhcCC-CC-CEEEEecCCCCHHHHH
Q 007327 88 FRSAAASSMAALKQP-TI-RVVAIIAEGVPEADTK 120 (608)
Q Consensus 88 ~~~~~~~~le~~~~~-gv-~~~viis~Gf~e~~~~ 120 (608)
+.. ..++++.+... .- +.+|-+++|++....+
T Consensus 75 p~~-~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~ 108 (279)
T PRK07679 75 PKD-VAEALIPFKEYIHNNQLIISLLAGVSTHSIR 108 (279)
T ss_pred HHH-HHHHHHHHHhhcCCCCEEEEECCCCCHHHHH
Confidence 986 56666766521 11 2344446899765333
No 165
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=77.59 E-value=7.2 Score=39.84 Aligned_cols=96 Identities=10% Similarity=0.023 Sum_probs=54.4
Q ss_pred cEEEEE-c-CCchHHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEeccC
Q 007327 11 TQALFY-N-YKQLPIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSF 88 (608)
Q Consensus 11 s~avv~-g-~~~~~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi~vp~ 88 (608)
++.+|| | ++..+.+.+.+.++. ...+...+ +... ....+ .....|...+.+..++.. +.|++++++|+
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~----~~~i~v~~-r~~~-~~~~l-~~~~~~~~~~~~~~~~~~---~aDvVilav~p 71 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPAD----VSEIIVSP-RNAQ-IAARL-AERFPKVRIAKDNQAVVD---RSDVVFLAVRP 71 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCC----hheEEEEC-CCHH-HHHHH-HHHcCCceEeCCHHHHHH---hCCEEEEEeCH
Confidence 578885 3 223377888877643 11233333 3211 00001 011225667788888755 47999999998
Q ss_pred hhcHHHHHHHhcCCCCCEEEEecCCCCHH
Q 007327 89 RSAAASSMAALKQPTIRVVAIIAEGVPEA 117 (608)
Q Consensus 89 ~~~~~~~le~~~~~gv~~~viis~Gf~e~ 117 (608)
.. ..++++++.-..=+.+|-+.+|.+-.
T Consensus 72 ~~-~~~vl~~l~~~~~~~vis~~ag~~~~ 99 (258)
T PRK06476 72 QI-AEEVLRALRFRPGQTVISVIAATDRA 99 (258)
T ss_pred HH-HHHHHHHhccCCCCEEEEECCCCCHH
Confidence 64 67777776422334556666777654
No 166
>PRK06091 membrane protein FdrA; Validated
Probab=77.53 E-value=1.4e+02 Score=34.33 Aligned_cols=252 Identities=18% Similarity=0.116 Sum_probs=139.6
Q ss_pred CCCCcEEEEEcCCch----HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEE
Q 007327 7 FSKTTQALFYNYKQL----PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVF 82 (608)
Q Consensus 7 ~~p~s~avv~g~~~~----~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDla 82 (608)
+.|-.|++| +.||. ++.+..+.|. |. =..+. -+.. +.+ +|+-|+-.-.-++- ..+.|+.++.
T Consensus 191 ~~~G~IgiV-SQSGtl~~~v~~~a~~~Gi----G~--S~~Vs-~Gn~-Dls----~~~ggi~~~D~L~~-L~~DP~TkvI 256 (555)
T PRK06091 191 MPEGNIGVI-GASGTGIQELCSQIALAGE----GI--THAIG-LGGR-DLS----AEVGGISALTALEM-LSADEKSEVI 256 (555)
T ss_pred CCCCCEEEE-eCcHHHHHHHHHHHHHcCC----Ce--EEEEE-CCCC-ccc----cccCCCCHHHHHHH-HhhCCCCcEE
Confidence 467889999 55555 4444444442 21 12333 1111 000 12224433333332 2333467888
Q ss_pred EEec--cChhcHHHHHHHhcCCCCCEEEEecCCCCHH----------HHHHHHHHHHhCC-CeEEcCCcccccccCcccc
Q 007327 83 INFS--SFRSAAASSMAALKQPTIRVVAIIAEGVPEA----------DTKQLIAYARSNN-KVVIGPATVGGIQAGAFKI 149 (608)
Q Consensus 83 vi~v--p~~~~~~~~le~~~~~gv~~~viis~Gf~e~----------~~~~l~~~a~~~g-~rvlGPNc~Gi~~~~~~~l 149 (608)
++.+ |++.....+++.+.+.+-+-+++.++..+.. ..+++.+.|.... ......+ +
T Consensus 257 vly~kppaE~v~~~fl~aar~~~KPVVvlk~Grs~~g~~q~GVi~a~tleEl~~~A~~la~~~~~~~~-----------~ 325 (555)
T PRK06091 257 AFVSKPPAEAVRLKIINAMKATGKPVVALFLGYTPAVARDENVWFASTLDEAARLACLLSRVTAQRNA-----------I 325 (555)
T ss_pred EEEEecCchHHHHHHHHHHhhCCCCEEEEEecCCchhhhcCCeEEeCCHHHHHHHHHHHhcccccccc-----------c
Confidence 8777 3444456777877766655555544433321 3455656554322 1111100 0
Q ss_pred cccCCcccccccccCCCCCcEEEEecChhHHHHHHHHHHhcCCcee----------------EEeecCCCCC------CC
Q 007327 150 GDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIY----------------EGIAIGGDVF------PG 207 (608)
Q Consensus 150 ~~~~~~~~~~~p~~~~~~G~valvSQSG~l~~~~~~~~~~~g~G~s----------------~~vs~Gn~~~------~d 207 (608)
+ ....+.|==+--.|+++.+.+ .+.+...++. .+|..|-+.+ +.
T Consensus 326 -----------~--~~~~~~irGly~GGTL~~Ea~-~~~~~~~~~~~~~~~~~~~~l~~~~h~~iDlGdD~~T~GrpHPM 391 (555)
T PRK06091 326 -----------L--PVSQGFICGLYTGGTLAAEAA-GLLAGHLGVEADDEHHHGMMLDADGHQIIDLGDDFYTVGRPHPM 391 (555)
T ss_pred -----------c--cccCCeeEEEecCchHHHHHH-HHHHhcCCCccCCcCCccceeecCCceEEecCcccccCCCCCCC
Confidence 0 012233433445688999887 6655555533 3445554432 12
Q ss_pred CCH---HHHHHHhhcCCCccEEEEEEecCCc---cH-HHHHHHHHhCC------CCCCEEEEEeCCCccCcccccccCCC
Q 007327 208 STL---SDHILRFNNIPQVKMMVVLGELGGR---DE-YSLVEALKQGK------VNKPVVAWVSGTCARLFKSEVQFGHA 274 (608)
Q Consensus 208 v~~---~d~l~~l~~Dp~T~~I~ly~E~g~~---~~-~~f~~~~r~a~------~~KPVvvlk~Grs~~g~~~~aa~sHt 274 (608)
+|. .+.+.-..+||+|.||++-+.+|.. || ..++.+++++. +.-+||+...|+-.-- +.
T Consensus 392 IDp~~R~~~~~~~a~dp~~~VillD~vlGyGah~dpa~~l~~ai~~~~~~~~~~r~l~~v~~v~GT~~Dp--Q~------ 463 (555)
T PRK06091 392 IDPTLRNQLIADLGAKPQVRVLLLDVVIGFGATADPAGSLVSAIQKACAARADGQPLYAIATVTGTERDP--QC------ 463 (555)
T ss_pred cChHHHHHHHHHhccCCcceEEEEEeeeccCCCCChHHHHHHHHHHHHhhhhcCCceEEEEEEeCCCCCC--cC------
Confidence 333 3556667789999999999887774 34 35666655432 3357777888876542 21
Q ss_pred CCcCCCCcchHHHHHHHHHHcCCcccCCHHHHHHHHHHHHH
Q 007327 275 GAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFE 315 (608)
Q Consensus 275 galag~~~~~a~~~~a~~~qaGvi~v~~~~el~~~~~~~~~ 315 (608)
. ..-...|+++|+++++|-.+...++..+.+
T Consensus 464 ------~----~~q~~~L~~aGv~v~~sn~~a~~~a~~~~~ 494 (555)
T PRK06091 464 ------R----SQQIATLEDAGIAVVDSLPEATLLAAALIR 494 (555)
T ss_pred ------H----HHHHHHHHhCCeEEEcCcHHHHHHHHHHhh
Confidence 1 334578999999999999999999888774
No 167
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=77.50 E-value=3.6 Score=40.82 Aligned_cols=53 Identities=19% Similarity=0.243 Sum_probs=39.2
Q ss_pred CHHHHHHHhhcCCCccEEEEEEecCCc-c---HHHHHHHHHhCC-CCCCEEEEEeCCCc
Q 007327 209 TLSDHILRFNNIPQVKMMVVLGELGGR-D---EYSLVEALKQGK-VNKPVVAWVSGTCA 262 (608)
Q Consensus 209 ~~~d~l~~l~~Dp~T~~I~ly~E~g~~-~---~~~f~~~~r~a~-~~KPVvvlk~Grs~ 262 (608)
.+.+.++.+.+||++++|++++. +.. + .+.+.+++++.+ .+||||++--|...
T Consensus 21 ~l~~~l~~a~~d~~i~~ivl~~~-s~Gg~~~~~~~i~~~i~~~~~~~kpvia~v~g~~~ 78 (208)
T cd07023 21 SLIEQLRKAREDDSVKAVVLRIN-SPGGSVVASEEIYREIRRLRKAKKPVVASMGDVAA 78 (208)
T ss_pred HHHHHHHHHHhCCCCcEEEEEEE-CCCCCHHHHHHHHHHHHHHHhcCCcEEEEECCcch
Confidence 46778888889999999999998 432 2 235555666554 58999999887654
No 168
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=77.22 E-value=4.7 Score=42.98 Aligned_cols=80 Identities=25% Similarity=0.316 Sum_probs=58.8
Q ss_pred cEEEEecChhHHHHHHHHHHhcCCceeEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEe-cCCc--cHHHHHHHHH
Q 007327 169 SVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGE-LGGR--DEYSLVEALK 245 (608)
Q Consensus 169 ~valvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~T~~I~ly~E-~g~~--~~~~f~~~~r 245 (608)
.|++|--+|.+.. .+.+.+ .++ .-+..+.|+....||++|.|+|.++ ||+. ..+...+.++
T Consensus 60 ~Iavi~~~G~I~~--------~~~~~~---~~~-----~~~~~~~l~~~~~~~~vk~vvL~inSPGG~v~as~~i~~~l~ 123 (317)
T COG0616 60 VIAVIHVEGAIVA--------GGGPLR---FIG-----GDDIEEILRAARADPSVKAVVLRINSPGGSVVASELIARALK 123 (317)
T ss_pred EEEEEEeeeeeec--------CCCccc---ccc-----HHHHHHHHHHHhcCCCCceEEEEEECcCCchhHHHHHHHHHH
Confidence 5999999997743 222333 223 4457899999999999999999999 4333 2356777888
Q ss_pred hCCCCCCEEEEEeCCCccC
Q 007327 246 QGKVNKPVVAWVSGTCARL 264 (608)
Q Consensus 246 ~a~~~KPVvvlk~Grs~~g 264 (608)
+.+..|||+++-++-..+|
T Consensus 124 ~l~~~~PV~v~v~~~AASG 142 (317)
T COG0616 124 RLRAKKPVVVSVGGYAASG 142 (317)
T ss_pred HHhhcCCEEEEECCeecch
Confidence 8876669999987776665
No 169
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=77.08 E-value=6.6 Score=39.05 Aligned_cols=117 Identities=16% Similarity=0.174 Sum_probs=62.1
Q ss_pred EEEEEcCCch----HHHHHhhCcccCCCCCCcEEEEeCCCCCCcccc--ccCceeecccccCCHHHHhhcCCCccEEEEe
Q 007327 12 QALFYNYKQL----PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKL--FFGQEEIAIPVHSTVEAACAAHPMADVFINF 85 (608)
Q Consensus 12 ~avv~g~~~~----~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~--~~g~ev~G~~~y~sv~~i~~~~p~vDlavi~ 85 (608)
|+|+ |++|+ +++.|++.+|. +...+..+.+. .... ..|-++. .--|.+.+.+....-.+|.++++
T Consensus 1 I~V~-GatG~~G~~v~~~L~~~~~~------V~~l~R~~~~~-~~~~l~~~g~~vv-~~d~~~~~~l~~al~g~d~v~~~ 71 (233)
T PF05368_consen 1 ILVT-GATGNQGRSVVRALLSAGFS------VRALVRDPSSD-RAQQLQALGAEVV-EADYDDPESLVAALKGVDAVFSV 71 (233)
T ss_dssp EEEE-TTTSHHHHHHHHHHHHTTGC------EEEEESSSHHH-HHHHHHHTTTEEE-ES-TT-HHHHHHHHTTCSEEEEE
T ss_pred CEEE-CCccHHHHHHHHHHHhCCCC------cEEEEeccchh-hhhhhhcccceEe-ecccCCHHHHHHHHcCCceEEee
Confidence 4666 66555 88888886653 44445422111 0111 1344444 22354555543332258999988
Q ss_pred ccC---hh--cHHHHHHHhcCCCCCEEEEecCC--C-------CHH----HHHHHHHHHHhCCCe--EEcCC
Q 007327 86 SSF---RS--AAASSMAALKQPTIRVVAIIAEG--V-------PEA----DTKQLIAYARSNNKV--VIGPA 137 (608)
Q Consensus 86 vp~---~~--~~~~~le~~~~~gv~~~viis~G--f-------~e~----~~~~l~~~a~~~g~r--vlGPN 137 (608)
++. .. ....++++|.++|||.+|.-+-+ . ++. ...++.++.++.++. ++-|+
T Consensus 72 ~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss~~~~~~~~~~~~p~~~~~~~k~~ie~~l~~~~i~~t~i~~g 143 (233)
T PF05368_consen 72 TPPSHPSELEQQKNLIDAAKAAGVKHFVPSSFGADYDESSGSEPEIPHFDQKAEIEEYLRESGIPYTIIRPG 143 (233)
T ss_dssp SSCSCCCHHHHHHHHHHHHHHHT-SEEEESEESSGTTTTTTSTTHHHHHHHHHHHHHHHHHCTSEBEEEEE-
T ss_pred cCcchhhhhhhhhhHHHhhhccccceEEEEEecccccccccccccchhhhhhhhhhhhhhhccccceecccc
Confidence 883 21 23568888888999988743212 1 122 234667777887765 55554
No 170
>PRK08655 prephenate dehydrogenase; Provisional
Probab=76.96 E-value=15 Score=41.03 Aligned_cols=110 Identities=11% Similarity=0.038 Sum_probs=58.4
Q ss_pred CcEEEEEcC--Cc-hHHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEec
Q 007327 10 TTQALFYNY--KQ-LPIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFS 86 (608)
Q Consensus 10 ~s~avv~g~--~~-~~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi~v 86 (608)
|+++|+||. .| .+.+.+.+.|+. |.+++ ..... .... ..-.|+....+..+... +.|++|+++
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~-------V~v~~-r~~~~-~~~~--a~~~gv~~~~~~~e~~~---~aDvVIlav 66 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFE-------VIVTG-RDPKK-GKEV--AKELGVEYANDNIDAAK---DADIVIISV 66 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCE-------EEEEE-CChHH-HHHH--HHHcCCeeccCHHHHhc---cCCEEEEec
Confidence 468899742 23 377788877643 33444 21110 0000 01135555667766544 479999999
Q ss_pred cChhcHHHHHHHhcCC-CCCEEEEecCCCCHHHHHHHHHHHHhCCCeEEc
Q 007327 87 SFRSAAASSMAALKQP-TIRVVAIIAEGVPEADTKQLIAYARSNNKVVIG 135 (608)
Q Consensus 87 p~~~~~~~~le~~~~~-gv~~~viis~Gf~e~~~~~l~~~a~~~g~rvlG 135 (608)
|... ...+++++... .-..+|+-.+.......+.+.+... .+.+++|
T Consensus 67 p~~~-~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~-~~~~~V~ 114 (437)
T PRK08655 67 PINV-TEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYAP-EGVEILP 114 (437)
T ss_pred CHHH-HHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhcC-CCCEEEE
Confidence 9975 56777777632 2233444344454444444444322 2445444
No 171
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=76.90 E-value=13 Score=38.07 Aligned_cols=94 Identities=7% Similarity=0.048 Sum_probs=57.6
Q ss_pred CcEEEEE-c-CCchHHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecc
Q 007327 10 TTQALFY-N-YKQLPIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSS 87 (608)
Q Consensus 10 ~s~avv~-g-~~~~~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi~vp 87 (608)
++++++| | +++.+.+.|.+.+.. ....+...+ +... . .+.....+..++.. +.|+++++||
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~~~~---~~~~i~~~~-~~~~---------~-~~~~~~~~~~~~~~---~~D~Vilavk 66 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENSNII---GKENIYYHT-PSKK---------N-TPFVYLQSNEELAK---TCDIIVLAVK 66 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhCCCC---CcceEEEEC-CChh---------c-CCeEEeCChHHHHH---hCCEEEEEeC
Confidence 5788886 3 334477888776521 112366665 5332 1 13333455556544 4799999999
Q ss_pred ChhcHHHHHHHhcC-CCCCEEEEecCCCCHHHHHH
Q 007327 88 FRSAAASSMAALKQ-PTIRVVAIIAEGVPEADTKQ 121 (608)
Q Consensus 88 ~~~~~~~~le~~~~-~gv~~~viis~Gf~e~~~~~ 121 (608)
+.. +.++++++.. .+-+.+|.+.+|+.....++
T Consensus 67 p~~-~~~vl~~i~~~l~~~~iIS~~aGi~~~~l~~ 100 (260)
T PTZ00431 67 PDL-AGKVLLEIKPYLGSKLLISICGGLNLKTLEE 100 (260)
T ss_pred HHH-HHHHHHHHHhhccCCEEEEEeCCccHHHHHH
Confidence 986 7888888763 12356777889998644333
No 172
>PRK08818 prephenate dehydrogenase; Provisional
Probab=76.89 E-value=18 Score=39.49 Aligned_cols=83 Identities=13% Similarity=0.095 Sum_probs=48.7
Q ss_pred CCCcEEEEEc---CCchHHHHHhhC-cccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEE
Q 007327 8 SKTTQALFYN---YKQLPIQRMLDF-DFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFI 83 (608)
Q Consensus 8 ~p~s~avv~g---~~~~~~~~l~~~-~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlav 83 (608)
.-.+|.|||+ +++.+.+.+.+. ++ .|.+++ +... ...+..+... +.|++|
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~~~~-------~V~g~D-~~d~---------------~~~~~~~~v~---~aDlVi 56 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTRMQL-------EVIGHD-PADP---------------GSLDPATLLQ---RADVLI 56 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCC-------EEEEEc-CCcc---------------ccCCHHHHhc---CCCEEE
Confidence 4567888864 344466666643 33 366776 4221 1224455443 489999
Q ss_pred EeccChhcHHHHHHHhcCC----CCCEEEEecCCCCHH
Q 007327 84 NFSSFRSAAASSMAALKQP----TIRVVAIIAEGVPEA 117 (608)
Q Consensus 84 i~vp~~~~~~~~le~~~~~----gv~~~viis~Gf~e~ 117 (608)
+|+|... ...++++.... .-..+|.=.+.+.+.
T Consensus 57 lavPv~~-~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~ 93 (370)
T PRK08818 57 FSAPIRH-TAALIEEYVALAGGRAAGQLWLDVTSIKQA 93 (370)
T ss_pred EeCCHHH-HHHHHHHHhhhhcCCCCCeEEEECCCCcHH
Confidence 9999986 67788877642 223344334566653
No 173
>PRK06436 glycerate dehydrogenase; Provisional
Probab=76.85 E-value=11 Score=39.85 Aligned_cols=103 Identities=9% Similarity=0.070 Sum_probs=62.4
Q ss_pred CCCCCcEEEEE-cCCch-HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecc-cccCCHHHHhhcCCCccEE
Q 007327 6 LFSKTTQALFY-NYKQL-PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAI-PVHSTVEAACAAHPMADVF 82 (608)
Q Consensus 6 l~~p~s~avv~-g~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~-~~y~sv~~i~~~~p~vDla 82 (608)
.+.=+++.|+| |.-|+ +.+.+..+|+. |.+++ +... + .|. +.|.+++++.+ +.|++
T Consensus 119 ~L~gktvgIiG~G~IG~~vA~~l~afG~~-------V~~~~-r~~~---------~-~~~~~~~~~l~ell~---~aDiv 177 (303)
T PRK06436 119 LLYNKSLGILGYGGIGRRVALLAKAFGMN-------IYAYT-RSYV---------N-DGISSIYMEPEDIMK---KSDFV 177 (303)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCE-------EEEEC-CCCc---------c-cCcccccCCHHHHHh---hCCEE
Confidence 45667888885 44455 66767667653 55666 4221 0 122 24789999876 47999
Q ss_pred EEeccChhcHH-----HHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCe
Q 007327 83 INFSSFRSAAA-----SSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKV 132 (608)
Q Consensus 83 vi~vp~~~~~~-----~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~r 132 (608)
++++|...... ..++.+. . ..++|-++--+-.+++.|.+..++..+.
T Consensus 178 ~~~lp~t~~T~~li~~~~l~~mk-~--ga~lIN~sRG~~vd~~aL~~aL~~g~i~ 229 (303)
T PRK06436 178 LISLPLTDETRGMINSKMLSLFR-K--GLAIINVARADVVDKNDMLNFLRNHNDK 229 (303)
T ss_pred EECCCCCchhhcCcCHHHHhcCC-C--CeEEEECCCccccCHHHHHHHHHcCCce
Confidence 99999754333 3344443 2 3444444433334888888888876554
No 174
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=76.79 E-value=13 Score=40.45 Aligned_cols=84 Identities=12% Similarity=0.028 Sum_probs=49.7
Q ss_pred CcEEEEEc---CCchHHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEec
Q 007327 10 TTQALFYN---YKQLPIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFS 86 (608)
Q Consensus 10 ~s~avv~g---~~~~~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi~v 86 (608)
++++|||| +++.+.+.+.+.||. |.+++ . . -+.+.+++.. +.|++|+|+
T Consensus 99 ~~I~IiGG~GlmG~slA~~l~~~G~~-------V~~~d-~--~---------------~~~~~~~~~~---~aDlVilav 150 (374)
T PRK11199 99 RPVVIVGGKGQLGRLFAKMLTLSGYQ-------VRILE-Q--D---------------DWDRAEDILA---DAGMVIVSV 150 (374)
T ss_pred ceEEEEcCCChhhHHHHHHHHHCCCe-------EEEeC-C--C---------------cchhHHHHHh---cCCEEEEeC
Confidence 67999984 334477888887653 44554 2 1 0134555544 479999999
Q ss_pred cChhcHHHHHHHhcCCCCCEEEEecCCCCHHHHHHH
Q 007327 87 SFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQL 122 (608)
Q Consensus 87 p~~~~~~~~le~~~~~gv~~~viis~Gf~e~~~~~l 122 (608)
|... ...+++......-..+|+=.+.......+++
T Consensus 151 P~~~-~~~~~~~l~~l~~~~iv~Dv~SvK~~~~~~~ 185 (374)
T PRK11199 151 PIHL-TEEVIARLPPLPEDCILVDLTSVKNAPLQAM 185 (374)
T ss_pred cHHH-HHHHHHHHhCCCCCcEEEECCCccHHHHHHH
Confidence 9986 5677777764222333433444544333333
No 175
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=76.77 E-value=4 Score=39.37 Aligned_cols=54 Identities=26% Similarity=0.250 Sum_probs=37.5
Q ss_pred CHHHHHHHhhcCCCccEEEEEEecCCc-c---HHHHHHHHHhCC-CCCCEEEEEeCCCcc
Q 007327 209 TLSDHILRFNNIPQVKMMVVLGELGGR-D---EYSLVEALKQGK-VNKPVVAWVSGTCAR 263 (608)
Q Consensus 209 ~~~d~l~~l~~Dp~T~~I~ly~E~g~~-~---~~~f~~~~r~a~-~~KPVvvlk~Grs~~ 263 (608)
++.+.++.+.+||++|+|++.+. +.. + .+++.+++++.. .+||||++--|....
T Consensus 26 ~l~~~l~~a~~d~~v~~vvl~~~-~~gg~~~~~~~~~~~i~~~~~~~kpVia~v~G~a~g 84 (177)
T cd07014 26 TTAAQIRDARLDPKVKAIVLRVN-SPGGSVTASEVIRAELAAARAAGKPVVASGGGNAAS 84 (177)
T ss_pred HHHHHHHHHhcCCCceEEEEEee-CCCcCHHHHHHHHHHHHHHHhCCCCEEEEECCchhH
Confidence 45666777788999999999998 432 2 233344454443 689999998876554
No 176
>PRK06545 prephenate dehydrogenase; Validated
Probab=76.63 E-value=9.1 Score=41.34 Aligned_cols=110 Identities=15% Similarity=0.070 Sum_probs=61.3
Q ss_pred cEEEEE-c-CCchHHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeeccc--ccCCHHHHhhcCCCccEEEEec
Q 007327 11 TQALFY-N-YKQLPIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIP--VHSTVEAACAAHPMADVFINFS 86 (608)
Q Consensus 11 s~avv~-g-~~~~~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~--~y~sv~~i~~~~p~vDlavi~v 86 (608)
+|.||| | +++.+.+.+.+.|+. ..++..+ |.+... ....+ .|+. ...++.++.. +.|++|++|
T Consensus 2 ~I~iIG~GliG~siA~~L~~~G~~-----v~i~~~~-~~~~~~-~~a~~---~~~~~~~~~~~~~~~~---~aDlVilav 68 (359)
T PRK06545 2 TVLIVGLGLIGGSLALAIKAAGPD-----VFIIGYD-PSAAQL-ARALG---FGVIDELAADLQRAAA---EADLIVLAV 68 (359)
T ss_pred eEEEEEeCHHHHHHHHHHHhcCCC-----eEEEEeC-CCHHHH-HHHhc---CCCCcccccCHHHHhc---CCCEEEEeC
Confidence 578886 3 445588888888754 2355555 432210 00001 1221 1234555543 479999999
Q ss_pred cChhcHHHHHHHhcC--CCCCEEEEecCCCCHHHHHHHHHHHHhCCCeEEc
Q 007327 87 SFRSAAASSMAALKQ--PTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIG 135 (608)
Q Consensus 87 p~~~~~~~~le~~~~--~gv~~~viis~Gf~e~~~~~l~~~a~~~g~rvlG 135 (608)
|... ...++++... ..-+.+|.-.++.+....+++.+. ...+.+++|
T Consensus 69 P~~~-~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~-~~~~~~~ig 117 (359)
T PRK06545 69 PVDA-TAALLAELADLELKPGVIVTDVGSVKGAILAEAEAL-LGDLIRFVG 117 (359)
T ss_pred CHHH-HHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHh-cCCCCeEEe
Confidence 9975 6778887763 222345555667776544444433 234566666
No 177
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=76.52 E-value=16 Score=39.31 Aligned_cols=117 Identities=10% Similarity=0.053 Sum_probs=60.4
Q ss_pred CCCcEEEEEcCCch----HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHH-HHhhcCCCccEE
Q 007327 8 SKTTQALFYNYKQL----PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVE-AACAAHPMADVF 82 (608)
Q Consensus 8 ~p~s~avv~g~~~~----~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~-~i~~~~p~vDla 82 (608)
++..++|+| ++|. +++.|.+.+|. ..++..... ....|+...+.|.+ + .+..++ +... ++|++
T Consensus 6 ~~~kVaVvG-AtG~vG~eLlrlL~~~~hP---~~~l~~las-~rsaGk~~~~~~~~---~-~v~~~~~~~~~---~~D~v 73 (344)
T PLN02383 6 NGPSVAIVG-VTGAVGQEFLSVLTDRDFP---YSSLKMLAS-ARSAGKKVTFEGRD---Y-TVEELTEDSFD---GVDIA 73 (344)
T ss_pred CCCeEEEEc-CCChHHHHHHHHHHhCCCC---cceEEEEEc-cCCCCCeeeecCce---e-EEEeCCHHHHc---CCCEE
Confidence 567888885 4443 77877775543 122322222 22222222222211 1 222222 2222 48999
Q ss_pred EEeccChhcHHHHHHHhcCCCCCEEEEecCCC----------CHHHHHHHHHHHH---hCCCeEEcCCcc
Q 007327 83 INFSSFRSAAASSMAALKQPTIRVVAIIAEGV----------PEADTKQLIAYAR---SNNKVVIGPATV 139 (608)
Q Consensus 83 vi~vp~~~~~~~~le~~~~~gv~~~viis~Gf----------~e~~~~~l~~~a~---~~g~rvlGPNc~ 139 (608)
+.++|... .......+.++|++ +|=.|+-| ||-.-++|.. ++ +.+-.|-.|||.
T Consensus 74 f~a~p~~~-s~~~~~~~~~~g~~-VIDlS~~fR~~~~~p~~vPEvn~~~i~~-~~~~~~~~~iIanPgC~ 140 (344)
T PLN02383 74 LFSAGGSI-SKKFGPIAVDKGAV-VVDNSSAFRMEEGVPLVIPEVNPEAMKH-IKLGKGKGALIANPNCS 140 (344)
T ss_pred EECCCcHH-HHHHHHHHHhCCCE-EEECCchhhcCCCCceECCCcCHHHHHh-hhhcccCCcEEECCCcH
Confidence 99999875 45565666556654 34356544 3433344444 33 224489999995
No 178
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=76.12 E-value=13 Score=40.51 Aligned_cols=51 Identities=18% Similarity=0.176 Sum_probs=35.4
Q ss_pred cccccCCHHHHhhcCCCccEEEEeccChhcHHHHHHHhcC--CCC-C-EEEEecCCCCH
Q 007327 62 AIPVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQ--PTI-R-VVAIIAEGVPE 116 (608)
Q Consensus 62 G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~~~~le~~~~--~gv-~-~~viis~Gf~e 116 (608)
.+.+..++.++.. ..|++|++||+.. +..+++.+.. .-- + .+|.++-|+..
T Consensus 80 ni~~tsdl~eav~---~aDiIvlAVPsq~-l~~vl~~l~~~~~l~~~~~iIS~aKGIe~ 134 (365)
T PTZ00345 80 NIVAVSDLKEAVE---DADLLIFVIPHQF-LESVLSQIKENNNLKKHARAISLTKGIIV 134 (365)
T ss_pred ceEEecCHHHHHh---cCCEEEEEcChHH-HHHHHHHhccccccCCCCEEEEEeCCccc
Confidence 4455667777655 4799999999986 8888888874 111 2 45557889854
No 179
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=75.54 E-value=14 Score=39.50 Aligned_cols=109 Identities=11% Similarity=0.042 Sum_probs=60.4
Q ss_pred CCCCcEEEEE-cCCch-HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEE
Q 007327 7 FSKTTQALFY-NYKQL-PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFIN 84 (608)
Q Consensus 7 ~~p~s~avv~-g~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi 84 (608)
+.=++++||| |.-|+ +.+.+..+|+. |.+++ +.... .........+++++.+ +.|++++
T Consensus 144 l~g~~VgIIG~G~IG~~vA~~L~~~G~~-------V~~~d-~~~~~--------~~~~~~~~~~l~ell~---~aDiVil 204 (330)
T PRK12480 144 VKNMTVAIIGTGRIGAATAKIYAGFGAT-------ITAYD-AYPNK--------DLDFLTYKDSVKEAIK---DADIISL 204 (330)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCE-------EEEEe-CChhH--------hhhhhhccCCHHHHHh---cCCEEEE
Confidence 4445788886 43344 77778777653 55555 42220 1111233357888776 4799999
Q ss_pred eccChhcHHHHH-HH-hcCCCCCEEEEecCCCCH-HHHHHHHHHHHhCCCeEEc
Q 007327 85 FSSFRSAAASSM-AA-LKQPTIRVVAIIAEGVPE-ADTKQLIAYARSNNKVVIG 135 (608)
Q Consensus 85 ~vp~~~~~~~~l-e~-~~~~gv~~~viis~Gf~e-~~~~~l~~~a~~~g~rvlG 135 (608)
++|........+ +. ....+ +.++++..+=++ .+++.|.+..++..++-.|
T Consensus 205 ~lP~t~~t~~li~~~~l~~mk-~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaa 257 (330)
T PRK12480 205 HVPANKESYHLFDKAMFDHVK-KGAILVNAARGAVINTPDLIAAVNDGTLLGAA 257 (330)
T ss_pred eCCCcHHHHHHHhHHHHhcCC-CCcEEEEcCCccccCHHHHHHHHHcCCeeEEE
Confidence 999764222222 22 22122 233444433333 3788888888876655433
No 180
>PRK08605 D-lactate dehydrogenase; Validated
Probab=75.03 E-value=12 Score=40.19 Aligned_cols=111 Identities=14% Similarity=0.020 Sum_probs=62.2
Q ss_pred CCCCcEEEEE-cCCch-HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEE
Q 007327 7 FSKTTQALFY-NYKQL-PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFIN 84 (608)
Q Consensus 7 ~~p~s~avv~-g~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi 84 (608)
++-+++.||| |.-|+ +.+++.+ +| |. .|.+.+ |..... .-.++....+++++.+ +.|++++
T Consensus 144 l~g~~VgIIG~G~IG~~vA~~L~~-~~----g~-~V~~~d-~~~~~~-------~~~~~~~~~~l~ell~---~aDvIvl 206 (332)
T PRK08605 144 IKDLKVAVIGTGRIGLAVAKIFAK-GY----GS-DVVAYD-PFPNAK-------AATYVDYKDTIEEAVE---GADIVTL 206 (332)
T ss_pred eCCCEEEEECCCHHHHHHHHHHHh-cC----CC-EEEEEC-CCccHh-------HHhhccccCCHHHHHH---hCCEEEE
Confidence 5567888886 34344 5566633 33 22 356666 532210 0112344458888876 4799999
Q ss_pred eccChhcHHHHHH--HhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCeEE
Q 007327 85 FSSFRSAAASSMA--ALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVI 134 (608)
Q Consensus 85 ~vp~~~~~~~~le--~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~rvl 134 (608)
++|.......++. ......-..++|-++--...++++|.+..++..++-.
T Consensus 207 ~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~ga 258 (332)
T PRK08605 207 HMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGA 258 (332)
T ss_pred eCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEE
Confidence 9998654443321 1222223345555554344578888888887766533
No 181
>COG0372 GltA Citrate synthase [Energy production and conversion]
Probab=74.80 E-value=3 Score=45.68 Aligned_cols=110 Identities=12% Similarity=0.063 Sum_probs=65.1
Q ss_pred cCCcchhhhheeccCCCC--cccCCCCCCcccccCCcHHHHHHHhhcCCCCChhHHHHHHHHHHHhcCCCCCCccchhhh
Q 007327 347 VRAPTHIISTISDDRGEE--PCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTI 424 (608)
Q Consensus 347 ~p~i~A~~t~I~~~~g~~--i~~~g~dl~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHgl~~st~~aar 424 (608)
+-.+.+..|+||...|+. +.|||+++.|+..+. +|.++.|+||+|+-|+..+.+.+..-+.. -|.+ .- ++.+
T Consensus 20 l~~v~~~~t~is~id~~~g~L~yrGy~i~dla~~~-~feev~~LLl~G~lPt~~el~~~~~~~~~--~~~~--~~-~~~~ 93 (390)
T COG0372 20 LEGVAACETAISYIDGDGGILRYRGYDIEDLAEKS-SFEEVAYLLLYGELPTKAELAAFFAKLAA--RRTL--PE-QVIR 93 (390)
T ss_pred ccccceeeeeeeEecCCCceEEECCccHHHHHhhc-CHHHHHHHHHcCcCCChHHHHHHHHHHHH--hcCc--cH-HHHH
Confidence 345566778888777665 999999999999997 99999999998887755544333333333 2332 22 2334
Q ss_pred hhccCC--CChHHHHHHhh---hccCCCCcC---ccHHHHHHHHHH
Q 007327 425 VTARAG--KDLVSSLVSGL---LTIGPRFGG---AIDDAARYFKDA 462 (608)
Q Consensus 425 ~~aSt~--a~~~~av~agl---~a~Gp~hGG---a~~~a~~~l~~~ 462 (608)
+.-+-. .++..++.+++ .+..+.... .-+.+.+++..+
T Consensus 94 ~~~~~p~~~hpm~~l~~~vs~l~~~~~~~~~~~~~~~~a~rlia~~ 139 (390)
T COG0372 94 LLESLPRDAHPMAVLRTAVSALSAFYPDKLDLNDRREAALRLIAKL 139 (390)
T ss_pred HHHhCCCCcCcHHHHHHHHHHhccccccccccchhHHHHHHHHHHh
Confidence 443222 34555555554 333333222 233355555544
No 182
>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP. This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.
Probab=74.60 E-value=14 Score=41.09 Aligned_cols=90 Identities=16% Similarity=0.045 Sum_probs=51.0
Q ss_pred CcEEEEEcCCch---HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHh---hcCCCccEEE
Q 007327 10 TTQALFYNYKQL---PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAAC---AAHPMADVFI 83 (608)
Q Consensus 10 ~s~avv~g~~~~---~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~---~~~p~vDlav 83 (608)
+.++|+ |+++. +.+.+.+.... |...++-++ .... ..|.++.|+|++.+ +|+. .+. ++|.++
T Consensus 126 rrvlIi-Gag~~~~~l~~~l~~~~~~---g~~vvGfid-d~~~-----~~~~~i~g~pVlg~-~~l~~~i~~~-~id~Vi 193 (456)
T TIGR03022 126 RPAVII-GAGQNAAILYRALQSNPQL---GLRPLAVVD-TDPA-----ASGRLLTGLPVVGA-DDALRLYART-RYAYVI 193 (456)
T ss_pred ceEEEE-eCCHHHHHHHHHHhhCccC---CcEEEEEEe-CCcc-----ccccccCCCcccCh-hHHHHHHHhC-CCCEEE
Confidence 346666 55544 55666543211 234566665 3211 11246888999877 5543 223 589899
Q ss_pred EeccCh--hcHHHHHHHhcCCCCCEEEEec
Q 007327 84 NFSSFR--SAAASSMAALKQPTIRVVAIIA 111 (608)
Q Consensus 84 i~vp~~--~~~~~~le~~~~~gv~~~viis 111 (608)
|++|.. .....+++.|.+.|++.+.++.
T Consensus 194 IAip~~~~~~~~~ll~~l~~~~v~~V~~vP 223 (456)
T TIGR03022 194 VAMPGTQAEDMARLVRKLGALHFRNVLIVP 223 (456)
T ss_pred EecCCccHHHHHHHHHHHHhCCCeEEEEeC
Confidence 998842 3345677777777774455443
No 183
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=74.59 E-value=6.4 Score=36.28 Aligned_cols=106 Identities=12% Similarity=-0.003 Sum_probs=51.1
Q ss_pred CcEEEEEc-CCch-HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecc
Q 007327 10 TTQALFYN-YKQL-PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSS 87 (608)
Q Consensus 10 ~s~avv~g-~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi~vp 87 (608)
.+|.|||. --|. +.+.+.+.||. |.++.-...... ...-..+.+.++ .++.|+.+ +.|+.+|+||
T Consensus 11 l~I~iIGaGrVG~~La~aL~~ag~~-------v~~v~srs~~sa--~~a~~~~~~~~~-~~~~~~~~---~aDlv~iavp 77 (127)
T PF10727_consen 11 LKIGIIGAGRVGTALARALARAGHE-------VVGVYSRSPASA--ERAAAFIGAGAI-LDLEEILR---DADLVFIAVP 77 (127)
T ss_dssp -EEEEECTSCCCCHHHHHHHHTTSE-------EEEESSCHH-HH--HHHHC--TT------TTGGGC---C-SEEEE-S-
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCe-------EEEEEeCCcccc--cccccccccccc-cccccccc---cCCEEEEEec
Confidence 36778852 2222 66777777654 445431311110 000012333344 45667654 4899999999
Q ss_pred ChhcHHHHHHHhcCC---CCCEEEEecCCCCHHHHHHHHHHHHhCCCe
Q 007327 88 FRSAAASSMAALKQP---TIRVVAIIAEGVPEADTKQLIAYARSNNKV 132 (608)
Q Consensus 88 ~~~~~~~~le~~~~~---gv~~~viis~Gf~e~~~~~l~~~a~~~g~r 132 (608)
.+. +..+.+++... .-..+|+-|||=- -.++++=+++.|..
T Consensus 78 Dda-I~~va~~La~~~~~~~g~iVvHtSGa~---~~~vL~p~~~~Ga~ 121 (127)
T PF10727_consen 78 DDA-IAEVAEQLAQYGAWRPGQIVVHTSGAL---GSDVLAPARERGAI 121 (127)
T ss_dssp CCH-HHHHHHHHHCC--S-TT-EEEES-SS-----GGGGHHHHHTT-E
T ss_pred hHH-HHHHHHHHHHhccCCCCcEEEECCCCC---hHHhhhhHHHCCCe
Confidence 985 88888888865 3456888888742 23344445555543
No 184
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=74.54 E-value=19 Score=31.19 Aligned_cols=38 Identities=26% Similarity=0.325 Sum_probs=26.9
Q ss_pred CccEEEEeccC--hhcHHHHHHHhcCCCCCEEEEecCCCC
Q 007327 78 MADVFINFSSF--RSAAASSMAALKQPTIRVVAIIAEGVP 115 (608)
Q Consensus 78 ~vDlavi~vp~--~~~~~~~le~~~~~gv~~~viis~Gf~ 115 (608)
++|++|+++-. +.....+.+.|.+.+++.+.+=+.|..
T Consensus 48 ~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~~ 87 (97)
T PF10087_consen 48 KADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGVS 87 (97)
T ss_pred CCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCHH
Confidence 46999987654 344678889999889987665444443
No 185
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=74.40 E-value=8.6 Score=43.87 Aligned_cols=112 Identities=12% Similarity=0.060 Sum_probs=66.7
Q ss_pred CCCCcEEEEE-cCCch-HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEE
Q 007327 7 FSKTTQALFY-NYKQL-PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFIN 84 (608)
Q Consensus 7 ~~p~s~avv~-g~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi 84 (608)
+.=+++.||| |.-|+ +.+.+..+|+. |.+++ |...... .+-.|++.+.+++|+.+ +.|++++
T Consensus 136 l~gktvgIiG~G~IG~~vA~~l~~fG~~-------V~~~d-~~~~~~~-----~~~~g~~~~~~l~ell~---~aDvV~l 199 (525)
T TIGR01327 136 LYGKTLGVIGLGRIGSIVAKRAKAFGMK-------VLAYD-PYISPER-----AEQLGVELVDDLDELLA---RADFITV 199 (525)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCE-------EEEEC-CCCChhH-----HHhcCCEEcCCHHHHHh---hCCEEEE
Confidence 3446788885 33344 77788777643 55666 5211000 12235565678999876 4799999
Q ss_pred eccChhcHHHHH--HHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCeEE
Q 007327 85 FSSFRSAAASSM--AALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVI 134 (608)
Q Consensus 85 ~vp~~~~~~~~l--e~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~rvl 134 (608)
++|.......++ +.....+-..++|-++--+-.+++.|.+..++..++-.
T Consensus 200 ~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gA 251 (525)
T TIGR01327 200 HTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAA 251 (525)
T ss_pred ccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEE
Confidence 999754333333 33333333445555554344488899988888766543
No 186
>PRK08507 prephenate dehydrogenase; Validated
Probab=74.25 E-value=16 Score=37.67 Aligned_cols=76 Identities=11% Similarity=-0.026 Sum_probs=43.6
Q ss_pred cEEEEE-c-CCchHHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeeccc-ccCCHHHHhhcCCCccEEEEecc
Q 007327 11 TQALFY-N-YKQLPIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIP-VHSTVEAACAAHPMADVFINFSS 87 (608)
Q Consensus 11 s~avv~-g-~~~~~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~-~y~sv~~i~~~~p~vDlavi~vp 87 (608)
+|+||| | +++.+.+.+.+.|+. ..|.+++ +.... .... .-.|+. .+.+..++. +.|++|++||
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~-----~~v~~~d-~~~~~-~~~~---~~~g~~~~~~~~~~~~----~aD~Vilavp 67 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLI-----SKVYGYD-HNELH-LKKA---LELGLVDEIVSFEELK----KCDVIFLAIP 67 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCC-----CEEEEEc-CCHHH-HHHH---HHCCCCcccCCHHHHh----cCCEEEEeCc
Confidence 588886 3 333377888887652 2366666 42211 0000 112332 344666653 3799999999
Q ss_pred ChhcHHHHHHHhcC
Q 007327 88 FRSAAASSMAALKQ 101 (608)
Q Consensus 88 ~~~~~~~~le~~~~ 101 (608)
+.. ...+++++..
T Consensus 68 ~~~-~~~~~~~l~~ 80 (275)
T PRK08507 68 VDA-IIEILPKLLD 80 (275)
T ss_pred HHH-HHHHHHHHhc
Confidence 986 5667777653
No 187
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=74.24 E-value=6.3 Score=39.28 Aligned_cols=54 Identities=24% Similarity=0.249 Sum_probs=38.4
Q ss_pred CCHHHHHHHhhcCCCccEEEEEEecCCc-cH---HHHHHHHHhCC-CCCCEEEEEeCCCc
Q 007327 208 STLSDHILRFNNIPQVKMMVVLGELGGR-DE---YSLVEALKQGK-VNKPVVAWVSGTCA 262 (608)
Q Consensus 208 v~~~d~l~~l~~Dp~T~~I~ly~E~g~~-~~---~~f~~~~r~a~-~~KPVvvlk~Grs~ 262 (608)
-++.+.|+.+.+||++++|+|.+. +.. +. +++.+++++.+ .+||||++--|...
T Consensus 24 ~~l~~~l~~a~~d~~v~~ivL~~~-s~Gg~~~~~~~~~~~l~~~~~~~kpVia~v~g~a~ 82 (211)
T cd07019 24 DTTAAQIRDARLDPKVKAIVLRVN-SPGGSVTASEVIRAELAAARAAGKPVVVSAGGAAA 82 (211)
T ss_pred HHHHHHHHHHhhCCCceEEEEEEc-CCCcCHHHHHHHHHHHHHHHhCCCCEEEEECCeeh
Confidence 356788888999999999999988 332 32 23444444433 58999999877753
No 188
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=73.97 E-value=22 Score=33.51 Aligned_cols=57 Identities=23% Similarity=0.324 Sum_probs=40.6
Q ss_pred CccEEEEeccChh---cHHHHHHHhcCCCCCEEEEecCCC-CHHHHHHHHHHHHhCCC-eEEcCCc
Q 007327 78 MADVFINFSSFRS---AAASSMAALKQPTIRVVAIIAEGV-PEADTKQLIAYARSNNK-VVIGPAT 138 (608)
Q Consensus 78 ~vDlavi~vp~~~---~~~~~le~~~~~gv~~~viis~Gf-~e~~~~~l~~~a~~~g~-rvlGPNc 138 (608)
++|.++||.-... ..+.++|+|.++|+..+.++.+|. +..+.+++ +++|+ ++.+|.+
T Consensus 63 dv~vIgvSsl~g~h~~l~~~lve~lre~G~~~i~v~~GGvip~~d~~~l----~~~G~~~if~pgt 124 (143)
T COG2185 63 DVDVIGVSSLDGGHLTLVPGLVEALREAGVEDILVVVGGVIPPGDYQEL----KEMGVDRIFGPGT 124 (143)
T ss_pred CCCEEEEEeccchHHHHHHHHHHHHHHhCCcceEEeecCccCchhHHHH----HHhCcceeeCCCC
Confidence 5899888876532 246789999999999999888885 43343444 45676 6888854
No 189
>PLN02712 arogenate dehydrogenase
Probab=73.93 E-value=9.4 Score=44.90 Aligned_cols=77 Identities=13% Similarity=0.183 Sum_probs=48.2
Q ss_pred CCCcEEEEE-c-CCchHHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEe
Q 007327 8 SKTTQALFY-N-YKQLPIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINF 85 (608)
Q Consensus 8 ~p~s~avv~-g-~~~~~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi~ 85 (608)
++++|+||| | +++.+.+.+.+.|+. |.+++ +.... .. ..-.|+..+.+..++... +.|+++++
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~G~~-------V~~~d-r~~~~--~~---A~~~Gv~~~~d~~e~~~~--~aDvViLa 115 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQGHT-------VLAHS-RSDHS--LA---ARSLGVSFFLDPHDLCER--HPDVILLC 115 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCE-------EEEEe-CCHHH--HH---HHHcCCEEeCCHHHHhhc--CCCEEEEc
Confidence 456799996 2 333377888877643 55665 42210 00 122466678888875432 37999999
Q ss_pred ccChhcHHHHHHHhc
Q 007327 86 SSFRSAAASSMAALK 100 (608)
Q Consensus 86 vp~~~~~~~~le~~~ 100 (608)
||... ...++++..
T Consensus 116 vP~~~-~~~vl~~l~ 129 (667)
T PLN02712 116 TSIIS-TENVLKSLP 129 (667)
T ss_pred CCHHH-HHHHHHhhh
Confidence 99875 777777764
No 190
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=73.82 E-value=11 Score=39.12 Aligned_cols=93 Identities=10% Similarity=-0.082 Sum_probs=49.3
Q ss_pred CcEEEEE-c-CCchHHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeec-ccccCCHHHHhhcCCCccEEEEec
Q 007327 10 TTQALFY-N-YKQLPIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIA-IPVHSTVEAACAAHPMADVFINFS 86 (608)
Q Consensus 10 ~s~avv~-g-~~~~~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G-~~~y~sv~~i~~~~p~vDlavi~v 86 (608)
++|+||| | +++.+.+.+.+.|+. |.+++ +.... .... .+ .| +....+..+... +.|++|+++
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~-------V~~~d-~~~~~-~~~a--~~-~g~~~~~~~~~~~~~---~aDlVilav 65 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHT-------VYGVS-RREST-CERA--IE-RGLVDEASTDLSLLK---DCDLVILAL 65 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCE-------EEEEE-CCHHH-HHHH--HH-CCCcccccCCHhHhc---CCCEEEEcC
Confidence 3688886 4 344477788777643 66666 42211 0000 00 12 222222223333 489999999
Q ss_pred cChhcHHHHHHHhcCC-CCCEEEEecCCCCHHH
Q 007327 87 SFRSAAASSMAALKQP-TIRVVAIIAEGVPEAD 118 (608)
Q Consensus 87 p~~~~~~~~le~~~~~-gv~~~viis~Gf~e~~ 118 (608)
|... ...+++++... .-+.+|.-+++++...
T Consensus 66 p~~~-~~~~~~~l~~~l~~~~ii~d~~Svk~~~ 97 (279)
T PRK07417 66 PIGL-LLPPSEQLIPALPPEAIVTDVGSVKAPI 97 (279)
T ss_pred CHHH-HHHHHHHHHHhCCCCcEEEeCcchHHHH
Confidence 9976 55666766532 2334555556666543
No 191
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=73.67 E-value=16 Score=40.61 Aligned_cols=89 Identities=12% Similarity=0.042 Sum_probs=51.0
Q ss_pred CCcEEEEEcCCch---HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhh---cCCCccEE
Q 007327 9 KTTQALFYNYKQL---PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACA---AHPMADVF 82 (608)
Q Consensus 9 p~s~avv~g~~~~---~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~---~~p~vDla 82 (608)
.+.+.|| |.+.. +.+.+.+.... |...++-++ +.... +..+.|+|++.+++|+.+ +. ++|.+
T Consensus 125 ~~rvLIv-Gag~~a~~l~~~L~~~~~~---g~~vvG~id-d~~~~------~~~i~g~pVlg~~~~l~~~i~~~-~id~V 192 (445)
T TIGR03025 125 LRRVLIV-GTGEAARELAAALSRNPDL---GYRVVGFVD-DRPSD------RVEVAGLPVLGKLDDLVELVRAH-RVDEV 192 (445)
T ss_pred CCcEEEE-ECCHHHHHHHHHHhhCccC---CeEEEEEEe-CCccc------ccccCCCcccCCHHHHHHHHHhC-CCCEE
Confidence 3456666 54433 66666543211 334666565 32210 136788999988776542 34 48888
Q ss_pred EEeccChh--cHHHHHHHhcCCCCCEEEE
Q 007327 83 INFSSFRS--AAASSMAALKQPTIRVVAI 109 (608)
Q Consensus 83 vi~vp~~~--~~~~~le~~~~~gv~~~vi 109 (608)
+|+.|... ....+++.|.+.|++..++
T Consensus 193 iIa~p~~~~~~~~~ll~~~~~~gv~V~~v 221 (445)
T TIGR03025 193 IIALPLSEEARILELLLQLRDLGVDVRLV 221 (445)
T ss_pred EEecCcccHHHHHHHHHHHHhcCCEEEEe
Confidence 88887643 1235677777777764433
No 192
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=73.59 E-value=14 Score=39.10 Aligned_cols=115 Identities=9% Similarity=0.071 Sum_probs=73.4
Q ss_pred cEEEEE-cCCch-HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEeccC
Q 007327 11 TQALFY-NYKQL-PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSF 88 (608)
Q Consensus 11 s~avv~-g~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi~vp~ 88 (608)
.|..+| |..|+ .+.||++.||. -.||-++ +.+-. +| +-.|-.++.|-.|+.+ ..|.++.+||.
T Consensus 37 ~iGFIGLG~MG~~M~~nLik~G~k-----VtV~dr~-~~k~~---~f---~~~Ga~v~~sPaeVae---~sDvvitmv~~ 101 (327)
T KOG0409|consen 37 RIGFIGLGNMGSAMVSNLIKAGYK-----VTVYDRT-KDKCK---EF---QEAGARVANSPAEVAE---DSDVVITMVPN 101 (327)
T ss_pred eeeEEeeccchHHHHHHHHHcCCE-----EEEEeCc-HHHHH---HH---HHhchhhhCCHHHHHh---hcCEEEEEcCC
Confidence 455554 55555 99999999986 2566655 43321 11 3357789999999865 47999999998
Q ss_pred hhcHHHHHHHhcCCCC-------CEEEEecCCCCHHHHHHHHHHHHhCCCe-EEcCCccccc
Q 007327 89 RSAAASSMAALKQPTI-------RVVAIIAEGVPEADTKQLIAYARSNNKV-VIGPATVGGI 142 (608)
Q Consensus 89 ~~~~~~~le~~~~~gv-------~~~viis~Gf~e~~~~~l~~~a~~~g~r-vlGPNc~Gi~ 142 (608)
...+.+++-. ..|+ +...|-++=.......+|.+.++..|.| |=.|=+-|.-
T Consensus 102 ~~~v~~v~~g--~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~vDAPVSGg~~ 161 (327)
T KOG0409|consen 102 PKDVKDVLLG--KSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFVDAPVSGGVK 161 (327)
T ss_pred hHhhHHHhcC--CCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEEeccccCCch
Confidence 7656554432 1222 2222444445555778888888887776 4466555543
No 193
>PLN02688 pyrroline-5-carboxylate reductase
Probab=73.56 E-value=15 Score=37.48 Aligned_cols=96 Identities=8% Similarity=0.123 Sum_probs=55.7
Q ss_pred CcEEEEE-cC-CchHHHHHhhCcccCCCCCCcEEEE-eCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEec
Q 007327 10 TTQALFY-NY-KQLPIQRMLDFDFLCGRETPSVAGI-INPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFS 86 (608)
Q Consensus 10 ~s~avv~-g~-~~~~~~~l~~~~~~~~~g~~~v~~v-~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi~v 86 (608)
++|++|| |. +..+.++|++.+|.. ...|... + +... ....+ .-.|+....+..++.. +.|+++++|
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~---~~~i~v~~~-r~~~-~~~~~---~~~g~~~~~~~~e~~~---~aDvVil~v 69 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVP---PSRISTADD-SNPA-RRDVF---QSLGVKTAASNTEVVK---SSDVIILAV 69 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCC---cceEEEEeC-CCHH-HHHHH---HHcCCEEeCChHHHHh---cCCEEEEEE
Confidence 4578885 32 333888898887620 1134455 4 3222 11111 1146777788888654 479999999
Q ss_pred cChhcHHHHHHHhcCC-CC-CEEEEecCCCCHH
Q 007327 87 SFRSAAASSMAALKQP-TI-RVVAIIAEGVPEA 117 (608)
Q Consensus 87 p~~~~~~~~le~~~~~-gv-~~~viis~Gf~e~ 117 (608)
|+.. +.++++.+... .- +.+|-+++|.+..
T Consensus 70 ~~~~-~~~vl~~l~~~~~~~~~iIs~~~g~~~~ 101 (266)
T PLN02688 70 KPQV-VKDVLTELRPLLSKDKLLVSVAAGITLA 101 (266)
T ss_pred CcHH-HHHHHHHHHhhcCCCCEEEEecCCCcHH
Confidence 8865 77887766421 11 3344456787654
No 194
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=73.40 E-value=12 Score=39.18 Aligned_cols=112 Identities=13% Similarity=0.065 Sum_probs=57.9
Q ss_pred CcEEEEE-cCCch-HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecc--cccCCHHHHhhcCCCccEEEEe
Q 007327 10 TTQALFY-NYKQL-PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAI--PVHSTVEAACAAHPMADVFINF 85 (608)
Q Consensus 10 ~s~avv~-g~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~--~~y~sv~~i~~~~p~vDlavi~ 85 (608)
++|+||| |..|. +.+.+.+.|+. ..|.+++ +.... .... .-.|+ ....+..+... +.|++|++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~-----~~V~~~d-r~~~~-~~~a---~~~g~~~~~~~~~~~~~~---~aDvViia 73 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLA-----GEIVGAD-RSAET-RARA---RELGLGDRVTTSAAEAVK---GADLVILC 73 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCC-----cEEEEEE-CCHHH-HHHH---HhCCCCceecCCHHHHhc---CCCEEEEC
Confidence 4688886 33333 77777777642 1355666 42210 0000 01122 23456666544 47999999
Q ss_pred ccChhcHHHHHHHhcC-CCCCEEEEecCCCCHHHHHHHHHHHHhCCCeEEcC
Q 007327 86 SSFRSAAASSMAALKQ-PTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGP 136 (608)
Q Consensus 86 vp~~~~~~~~le~~~~-~gv~~~viis~Gf~e~~~~~l~~~a~~~g~rvlGP 136 (608)
+|... ...+++.+.. .+-+.+|+..++......+++.+.. ..+++++|-
T Consensus 74 vp~~~-~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~-~~~~~~v~~ 123 (307)
T PRK07502 74 VPVGA-SGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMAPHL-PEGVHFIPG 123 (307)
T ss_pred CCHHH-HHHHHHHHHhhCCCCCEEEeCccchHHHHHHHHHhC-CCCCeEEeC
Confidence 99975 5666666542 1223455555556544334443322 235566654
No 195
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=73.02 E-value=6.1 Score=38.17 Aligned_cols=108 Identities=17% Similarity=0.170 Sum_probs=60.9
Q ss_pred CCCCCCcEEEEE-cCCch-HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEE
Q 007327 5 QLFSKTTQALFY-NYKQL-PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVF 82 (608)
Q Consensus 5 ~l~~p~s~avv~-g~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDla 82 (608)
.-++-+++.|+| |.-|+ +.+.+..+|+ .|.+++ |..... . +....+. .|.+++|+.+. .|++
T Consensus 32 ~~l~g~tvgIiG~G~IG~~vA~~l~~fG~-------~V~~~d-~~~~~~--~--~~~~~~~-~~~~l~ell~~---aDiv 95 (178)
T PF02826_consen 32 RELRGKTVGIIGYGRIGRAVARRLKAFGM-------RVIGYD-RSPKPE--E--GADEFGV-EYVSLDELLAQ---ADIV 95 (178)
T ss_dssp S-STTSEEEEESTSHHHHHHHHHHHHTT--------EEEEEE-SSCHHH--H--HHHHTTE-EESSHHHHHHH----SEE
T ss_pred cccCCCEEEEEEEcCCcCeEeeeeecCCc-------eeEEec-ccCChh--h--hcccccc-eeeehhhhcch---hhhh
Confidence 345677888885 33344 7777777764 366777 533210 0 0012334 56799998873 7999
Q ss_pred EEeccChh-----cHHHHHHHhcCCCCCEEEEecCCCCHH-HHHHHHHHHHhCCCe
Q 007327 83 INFSSFRS-----AAASSMAALKQPTIRVVAIIAEGVPEA-DTKQLIAYARSNNKV 132 (608)
Q Consensus 83 vi~vp~~~-----~~~~~le~~~~~gv~~~viis~Gf~e~-~~~~l~~~a~~~g~r 132 (608)
++++|... .-.+.++.+. . .++++-.+=++. +++.|.+..++..++
T Consensus 96 ~~~~plt~~T~~li~~~~l~~mk-~---ga~lvN~aRG~~vde~aL~~aL~~g~i~ 147 (178)
T PF02826_consen 96 SLHLPLTPETRGLINAEFLAKMK-P---GAVLVNVARGELVDEDALLDALESGKIA 147 (178)
T ss_dssp EE-SSSSTTTTTSBSHHHHHTST-T---TEEEEESSSGGGB-HHHHHHHHHTTSEE
T ss_pred hhhhccccccceeeeeeeeeccc-c---ceEEEeccchhhhhhhHHHHHHhhccCc
Confidence 99999532 1234555554 2 334444444444 788898888876554
No 196
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=72.17 E-value=14 Score=39.14 Aligned_cols=104 Identities=11% Similarity=0.065 Sum_probs=61.9
Q ss_pred CCCCcEEEEE-cCCch-HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEE
Q 007327 7 FSKTTQALFY-NYKQL-PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFIN 84 (608)
Q Consensus 7 ~~p~s~avv~-g~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi 84 (608)
++=+++.||| |.-|+ +.+.+..+| . .|.+++ |.... +..+.+ |.+++|+.+ +.|++++
T Consensus 143 L~gktvGIiG~G~IG~~vA~~~~~fg------m-~V~~~d-~~~~~--------~~~~~~-~~~l~ell~---~sDvv~l 202 (311)
T PRK08410 143 IKGKKWGIIGLGTIGKRVAKIAQAFG------A-KVVYYS-TSGKN--------KNEEYE-RVSLEELLK---TSDIISI 202 (311)
T ss_pred cCCCEEEEECCCHHHHHHHHHHhhcC------C-EEEEEC-CCccc--------cccCce-eecHHHHhh---cCCEEEE
Confidence 4556888885 33355 666666554 3 355666 53211 112333 668999887 4799999
Q ss_pred eccChhcH-----HHHHHHhcCCCCCEEEEecCCCCH-HHHHHHHHHHHhCCCeEEc
Q 007327 85 FSSFRSAA-----ASSMAALKQPTIRVVAIIAEGVPE-ADTKQLIAYARSNNKVVIG 135 (608)
Q Consensus 85 ~vp~~~~~-----~~~le~~~~~gv~~~viis~Gf~e-~~~~~l~~~a~~~g~rvlG 135 (608)
.+|..... ...++.+. - .+++|-.+=++ -+++.|.+..++..++ .|
T Consensus 203 h~Plt~~T~~li~~~~~~~Mk---~-~a~lIN~aRG~vVDe~AL~~AL~~g~i~-Aa 254 (311)
T PRK08410 203 HAPLNEKTKNLIAYKELKLLK---D-GAILINVGRGGIVNEKDLAKALDEKDIY-AG 254 (311)
T ss_pred eCCCCchhhcccCHHHHHhCC---C-CeEEEECCCccccCHHHHHHHHHcCCeE-EE
Confidence 99975332 23344443 3 34444433333 3889999988887666 54
No 197
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=71.72 E-value=12 Score=35.53 Aligned_cols=88 Identities=19% Similarity=0.126 Sum_probs=50.3
Q ss_pred EEEEEcCCch----HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCcee--ecccccCCHHHHhhcCCCccEEEEe
Q 007327 12 QALFYNYKQL----PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEE--IAIPVHSTVEAACAAHPMADVFINF 85 (608)
Q Consensus 12 ~avv~g~~~~----~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev--~G~~~y~sv~~i~~~~p~vDlavi~ 85 (608)
|+|+ |++|. +++.|++.++. +...+-.|.+- ....+-++ ..+.-..++.+++. ++|.++.+
T Consensus 1 I~V~-GatG~vG~~l~~~L~~~~~~------V~~~~R~~~~~---~~~~~~~~~~~d~~d~~~~~~al~---~~d~vi~~ 67 (183)
T PF13460_consen 1 ILVF-GATGFVGRALAKQLLRRGHE------VTALVRSPSKA---EDSPGVEIIQGDLFDPDSVKAALK---GADAVIHA 67 (183)
T ss_dssp EEEE-TTTSHHHHHHHHHHHHTTSE------EEEEESSGGGH---HHCTTEEEEESCTTCHHHHHHHHT---TSSEEEEC
T ss_pred eEEE-CCCChHHHHHHHHHHHCCCE------EEEEecCchhc---ccccccccceeeehhhhhhhhhhh---hcchhhhh
Confidence 4566 55555 88888888653 33333322211 00111111 11222244555544 48999998
Q ss_pred ccC----hhcHHHHHHHhcCCCCCEEEEecC
Q 007327 86 SSF----RSAAASSMAALKQPTIRVVAIIAE 112 (608)
Q Consensus 86 vp~----~~~~~~~le~~~~~gv~~~viis~ 112 (608)
+++ ......++++|.+.|++.+|++|+
T Consensus 68 ~~~~~~~~~~~~~~~~a~~~~~~~~~v~~s~ 98 (183)
T PF13460_consen 68 AGPPPKDVDAAKNIIEAAKKAGVKRVVYLSS 98 (183)
T ss_dssp CHSTTTHHHHHHHHHHHHHHTTSSEEEEEEE
T ss_pred hhhhcccccccccccccccccccccceeeec
Confidence 885 223567888898899999998875
No 198
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=71.27 E-value=2e+02 Score=33.23 Aligned_cols=201 Identities=14% Similarity=0.088 Sum_probs=114.2
Q ss_pred cEEEEEcCCch---HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHh---hcCCCccEEEE
Q 007327 11 TQALFYNYKQL---PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAAC---AAHPMADVFIN 84 (608)
Q Consensus 11 s~avv~g~~~~---~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~---~~~p~vDlavi 84 (608)
+.+++.|++.. .++.+...+ ....|+.++ +.. ..+|.++.|+|+|.+++ +. +.. .+|..+|
T Consensus 117 ~r~lIiGAG~ag~~l~r~~~~~~-----~~~pV~fiD-dd~-----~~~g~~i~Gv~V~g~~~-i~~~v~~~-~~~~iii 183 (588)
T COG1086 117 IRLLIIGAGSAGDLLLRALRRDP-----EYTPVAFLD-DDP-----DLTGMKIRGVPVLGRIE-IERVVEEL-GIQLILI 183 (588)
T ss_pred CceEEEcCchHHHHHHHHHHhCC-----CcceEEEEC-CCh-----hhcCCEEeceeeechhH-HHHHHHHc-CCceEEE
Confidence 33444454433 778777764 224666666 422 34578999999998876 54 345 4899999
Q ss_pred eccChh--cHHHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHH---HHhCCC-eEEcCCcccccccCcccccccCCcccc
Q 007327 85 FSSFRS--AAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAY---ARSNNK-VVIGPATVGGIQAGAFKIGDTAGTIDN 158 (608)
Q Consensus 85 ~vp~~~--~~~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~---a~~~g~-rvlGPNc~Gi~~~~~~~l~~~~~~~~~ 158 (608)
++|... ....+++.|.+.|++.-++ . .+ .++.+. .|+-.+ .++|=.- . .+ .+.
T Consensus 184 Aips~~~~~~~~i~~~l~~~~~~v~~l-P-~~-----~~l~~~~~~lreI~ieDLLgR~p-------V-~~-----d~~- 242 (588)
T COG1086 184 AIPSASQEERRRILLRLARTGIAVRIL-P-QL-----TDLKDLNGQLREIEIEDLLGRPP-------V-AL-----DTE- 242 (588)
T ss_pred ecCCCCHHHHHHHHHHHHhcCCcEEec-C-cH-----HHHHHhccccccCCHHHHhCCCC-------C-CC-----CHH-
Confidence 999843 2456888999888665444 1 11 222220 111111 1222110 0 11 000
Q ss_pred cccccCCCCCcEEEEec-ChhHHHHHHHHHHhcCCceeEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCccH
Q 007327 159 IIHCKLYRPGSVGFVSK-SGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDE 237 (608)
Q Consensus 159 ~~p~~~~~~G~valvSQ-SG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~T~~I~ly~E~g~~~~ 237 (608)
+-...-.|+.-+|+- .|++|.+++.+..+. +....+=.+.+- ...-++-..|.+.-....+..|+= .++|-
T Consensus 243 --~i~~~~~gK~vLVTGagGSiGsel~~qil~~--~p~~i~l~~~~E---~~~~~i~~el~~~~~~~~~~~~ig-dVrD~ 314 (588)
T COG1086 243 --LIGAMLTGKTVLVTGGGGSIGSELCRQILKF--NPKEIILFSRDE---YKLYLIDMELREKFPELKLRFYIG-DVRDR 314 (588)
T ss_pred --HHHhHcCCCEEEEeCCCCcHHHHHHHHHHhc--CCCEEEEecCch---HHHHHHHHHHHhhCCCcceEEEec-ccccH
Confidence 001124577777765 466899999888766 555666555553 234444445555322344556666 68998
Q ss_pred HHHHHHHHhCCCCCCEEEE
Q 007327 238 YSLVEALKQGKVNKPVVAW 256 (608)
Q Consensus 238 ~~f~~~~r~a~~~KPVvvl 256 (608)
++..++.+. -||=+++
T Consensus 315 ~~~~~~~~~---~kvd~Vf 330 (588)
T COG1086 315 DRVERAMEG---HKVDIVF 330 (588)
T ss_pred HHHHHHHhc---CCCceEE
Confidence 888888775 4677777
No 199
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=70.91 E-value=46 Score=34.05 Aligned_cols=49 Identities=8% Similarity=0.223 Sum_probs=30.4
Q ss_pred HHHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCeEEcCCcccc
Q 007327 92 AASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVGG 141 (608)
Q Consensus 92 ~~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~rvlGPNc~Gi 141 (608)
..++++++.+.|+|.+-++|- |.+...++++++-++.|+.|+.=-++|+
T Consensus 108 ~~A~~~AL~alg~~RIalvTP-Y~~~v~~~~~~~l~~~G~eV~~~~~~~~ 156 (239)
T TIGR02990 108 SSAAVDGLAALGVRRISLLTP-YTPETSRPMAQYFAVRGFEIVNFTCLGL 156 (239)
T ss_pred HHHHHHHHHHcCCCEEEEECC-CcHHHHHHHHHHHHhCCcEEeeeeccCC
Confidence 345566666667777776665 6666666666666666666655544444
No 200
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=70.75 E-value=5.6 Score=37.60 Aligned_cols=73 Identities=15% Similarity=0.160 Sum_probs=43.1
Q ss_pred cccccCCHHHHhhcCCCccEEEEeccChhcHHHHHHHhcC--CCCCEEEEecCCCCHH----HHHHHHHHHHhCCC-eEE
Q 007327 62 AIPVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQ--PTIRVVAIIAEGVPEA----DTKQLIAYARSNNK-VVI 134 (608)
Q Consensus 62 G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~~~~le~~~~--~gv~~~viis~Gf~e~----~~~~l~~~a~~~g~-rvl 134 (608)
.+.+..+++++.+ +.|+.+++||... ...+++.+.. +.-+.+|+.+-||-.. ..+.+.+......+ -+-
T Consensus 56 ~i~~t~dl~~a~~---~ad~IiiavPs~~-~~~~~~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~~~~~ls 131 (157)
T PF01210_consen 56 NIKATTDLEEALE---DADIIIIAVPSQA-HREVLEQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIPRIAVLS 131 (157)
T ss_dssp TEEEESSHHHHHT---T-SEEEE-S-GGG-HHHHHHHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSCGEEEEE
T ss_pred ccccccCHHHHhC---cccEEEecccHHH-HHHHHHHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhhcceEEee
Confidence 4567888988776 4799999999986 7889999885 2234556667799222 33444444433333 377
Q ss_pred cCCc
Q 007327 135 GPAT 138 (608)
Q Consensus 135 GPNc 138 (608)
|||-
T Consensus 132 GP~~ 135 (157)
T PF01210_consen 132 GPSF 135 (157)
T ss_dssp SS--
T ss_pred CccH
Confidence 7764
No 201
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=70.26 E-value=18 Score=38.01 Aligned_cols=80 Identities=13% Similarity=0.050 Sum_probs=48.3
Q ss_pred CCcEEEEE-cCCch-HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEec
Q 007327 9 KTTQALFY-NYKQL-PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFS 86 (608)
Q Consensus 9 p~s~avv~-g~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi~v 86 (608)
.++|+|+| |..|. +.+++.+.||. |...+ ... + .+++++.. +.|++++++
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~-------V~~~~-r~~----------~-------~~~~~~~~---~advvi~~v 55 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHR-------VRVWS-RRS----------G-------LSLAAVLA---DADVIVSAV 55 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCE-------EEEEe-CCC----------C-------CCHHHHHh---cCCEEEEEC
Confidence 46788886 33344 77788888764 44444 211 1 46677654 479999999
Q ss_pred cChhcHHHHHHHhcCCCC--CEEEE-ecCCCCHH
Q 007327 87 SFRSAAASSMAALKQPTI--RVVAI-IAEGVPEA 117 (608)
Q Consensus 87 p~~~~~~~~le~~~~~gv--~~~vi-is~Gf~e~ 117 (608)
|.. .+..+++.+..... +.++| .|.|+.+.
T Consensus 56 p~~-~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~ 88 (308)
T PRK14619 56 SMK-GVRPVAEQVQALNLPPETIIVTATKGLDPE 88 (308)
T ss_pred ChH-HHHHHHHHHHHhcCCCCcEEEEeCCcccCC
Confidence 996 47788777753222 22333 34466544
No 202
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=70.09 E-value=17 Score=37.81 Aligned_cols=99 Identities=14% Similarity=0.099 Sum_probs=58.6
Q ss_pred cEEEEE-c-CCchHHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEeccC
Q 007327 11 TQALFY-N-YKQLPIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSF 88 (608)
Q Consensus 11 s~avv~-g-~~~~~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi~vp~ 88 (608)
++++|| | +++.+.+.|++.|+. ....|...+ +.... ...+ .+-.|+..+.+..++.. +.|+++++||+
T Consensus 4 ~IgfIG~G~MG~aia~~L~~~g~~---~~~~I~v~~-r~~~~-~~~l--~~~~g~~~~~~~~e~~~---~aDiIiLavkP 73 (272)
T PRK12491 4 QIGFIGCGNMGIAMIGGMINKNIV---SPDQIICSD-LNVSN-LKNA--SDKYGITITTNNNEVAN---SADILILSIKP 73 (272)
T ss_pred eEEEECccHHHHHHHHHHHHCCCC---CCceEEEEC-CCHHH-HHHH--HHhcCcEEeCCcHHHHh---hCCEEEEEeCh
Confidence 578885 3 333388888887752 112366666 53321 1111 01135666777777654 47999999999
Q ss_pred hhcHHHHHHHhcC--CCCCEEEEecCCCCHHHHH
Q 007327 89 RSAAASSMAALKQ--PTIRVVAIIAEGVPEADTK 120 (608)
Q Consensus 89 ~~~~~~~le~~~~--~gv~~~viis~Gf~e~~~~ 120 (608)
.. +.++++.+.. ++=+.+|=+.+|++-...+
T Consensus 74 ~~-~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~ 106 (272)
T PRK12491 74 DL-YSSVINQIKDQIKNDVIVVTIAAGKSIKSTE 106 (272)
T ss_pred HH-HHHHHHHHHHhhcCCcEEEEeCCCCcHHHHH
Confidence 64 8888887762 1123455567899864333
No 203
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=69.96 E-value=12 Score=38.74 Aligned_cols=99 Identities=9% Similarity=0.011 Sum_probs=54.7
Q ss_pred cEEEEE-cCCch-HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEeccC
Q 007327 11 TQALFY-NYKQL-PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSF 88 (608)
Q Consensus 11 s~avv~-g~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi~vp~ 88 (608)
.+++|| |.-|. +.+.+.+.+.. ....|..++ +........+. .+..++....+..++.. +.|++|++||+
T Consensus 3 ~I~iIG~G~mG~ala~~L~~~g~~---~~~~V~~~~-r~~~~~~~~l~-~~~~~~~~~~~~~e~~~---~aDvVilavpp 74 (277)
T PRK06928 3 KIGFIGYGSMADMIATKLLETEVA---TPEEIILYS-SSKNEHFNQLY-DKYPTVELADNEAEIFT---KCDHSFICVPP 74 (277)
T ss_pred EEEEECccHHHHHHHHHHHHCCCC---CcccEEEEe-CCcHHHHHHHH-HHcCCeEEeCCHHHHHh---hCCEEEEecCH
Confidence 578886 33333 66777776411 011344555 32211000000 01123445567777654 47999999999
Q ss_pred hhcHHHHHHHhcCC--CCCEEEEecCCCCHHH
Q 007327 89 RSAAASSMAALKQP--TIRVVAIIAEGVPEAD 118 (608)
Q Consensus 89 ~~~~~~~le~~~~~--gv~~~viis~Gf~e~~ 118 (608)
.. +.++++++... .=+.+|.++.|+....
T Consensus 75 ~~-~~~vl~~l~~~l~~~~~ivS~~aGi~~~~ 105 (277)
T PRK06928 75 LA-VLPLLKDCAPVLTPDRHVVSIAAGVSLDD 105 (277)
T ss_pred HH-HHHHHHHHHhhcCCCCEEEEECCCCCHHH
Confidence 75 77788877421 1235777888998653
No 204
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=69.96 E-value=16 Score=40.01 Aligned_cols=103 Identities=14% Similarity=0.024 Sum_probs=61.1
Q ss_pred CCCCCcEEEEE-cCCch-HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEE
Q 007327 6 LFSKTTQALFY-NYKQL-PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFI 83 (608)
Q Consensus 6 l~~p~s~avv~-g~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlav 83 (608)
-+.-+++.||| |.-|+ +.+.+..+|+. |.+.+ |... +..+...|.+++++.. +.|.++
T Consensus 113 ~l~gktvGIIG~G~IG~~va~~l~a~G~~-------V~~~D-p~~~---------~~~~~~~~~~l~ell~---~aDiV~ 172 (381)
T PRK00257 113 DLAERTYGVVGAGHVGGRLVRVLRGLGWK-------VLVCD-PPRQ---------EAEGDGDFVSLERILE---ECDVIS 172 (381)
T ss_pred CcCcCEEEEECCCHHHHHHHHHHHHCCCE-------EEEEC-Cccc---------ccccCccccCHHHHHh---hCCEEE
Confidence 35567889995 33344 77888888754 55666 5332 1112234678999876 479999
Q ss_pred EeccChh-----c---H-HHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCC
Q 007327 84 NFSSFRS-----A---A-ASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNK 131 (608)
Q Consensus 84 i~vp~~~-----~---~-~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~ 131 (608)
+.+|-.. + + ...++.+. -..++|-++-=+-.+++.|.+..++..+
T Consensus 173 lh~Plt~~g~~~T~~li~~~~l~~mk---~gailIN~aRG~vVde~AL~~aL~~g~i 226 (381)
T PRK00257 173 LHTPLTKEGEHPTRHLLDEAFLASLR---PGAWLINASRGAVVDNQALREALLSGED 226 (381)
T ss_pred EeCcCCCCccccccccCCHHHHhcCC---CCeEEEECCCCcccCHHHHHHHHHhCCC
Confidence 9999642 1 1 22344433 2344444443333478888888776544
No 205
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=69.88 E-value=17 Score=39.03 Aligned_cols=70 Identities=14% Similarity=0.097 Sum_probs=50.4
Q ss_pred cccccCCHHHHhhcCCCccEEEEeccChhcHHHHHHHhcCCCCCEEEEec-CCCCHHHHHHHHHHHHhCCCeEE
Q 007327 62 AIPVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQPTIRVVAIIA-EGVPEADTKQLIAYARSNNKVVI 134 (608)
Q Consensus 62 G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~~~~le~~~~~gv~~~viis-~Gf~e~~~~~l~~~a~~~g~rvl 134 (608)
..++|.|.+++... |+||.++|..|...-..-++-++. +| |.+.+=- -.....+-++|++.|++.|+.++
T Consensus 57 ~~k~y~syEeLakd-~~vDvVyi~~~~~qH~evv~l~l~-~~-K~VL~EKPla~n~~e~~~iveaA~~rgv~~m 127 (351)
T KOG2741|consen 57 NPKAYGSYEELAKD-PEVDVVYISTPNPQHYEVVMLALN-KG-KHVLCEKPLAMNVAEAEEIVEAAEARGVFFM 127 (351)
T ss_pred CCccccCHHHHhcC-CCcCEEEeCCCCccHHHHHHHHHH-cC-CcEEecccccCCHHHHHHHHHHHHHcCcEEE
Confidence 46899999998664 479999999998876666666665 33 4444421 14455578999999999997643
No 206
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=69.73 E-value=19 Score=42.76 Aligned_cols=111 Identities=10% Similarity=-0.010 Sum_probs=62.3
Q ss_pred CcEEEEE-c-CCchHHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeeccc--ccCCHHHHhhcCCCccEEEEe
Q 007327 10 TTQALFY-N-YKQLPIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIP--VHSTVEAACAAHPMADVFINF 85 (608)
Q Consensus 10 ~s~avv~-g-~~~~~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~--~y~sv~~i~~~~p~vDlavi~ 85 (608)
++++||| | +++.+.+.+.+.|+. ..|.+++ +.... .... .-.|.. ...+..++.. +.|+++++
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~-----~~V~~~d-~~~~~-~~~a---~~~g~~~~~~~~~~~~~~---~aDvVila 70 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLA-----REVVAVD-RRAKS-LELA---VSLGVIDRGEEDLAEAVS---GADVIVLA 70 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCC-----CEEEEEE-CChhH-HHHH---HHCCCCCcccCCHHHHhc---CCCEEEEC
Confidence 4688885 3 333377778777641 1366666 43221 0000 012332 3445666544 47999999
Q ss_pred ccChhcHHHHHHHhcCC-CCCEEEEecCCCCHHHHHHHHHHHHhCCCeEE
Q 007327 86 SSFRSAAASSMAALKQP-TIRVVAIIAEGVPEADTKQLIAYARSNNKVVI 134 (608)
Q Consensus 86 vp~~~~~~~~le~~~~~-gv~~~viis~Gf~e~~~~~l~~~a~~~g~rvl 134 (608)
||+.. ..++++.+... .-+.+|+..++.+....+++.+......+|++
T Consensus 71 vp~~~-~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~ 119 (735)
T PRK14806 71 VPVLA-MEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFV 119 (735)
T ss_pred CCHHH-HHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEE
Confidence 99975 77888877632 22345665677776555555555433455654
No 207
>PRK15204 undecaprenyl-phosphate galactose phosphotransferase; Provisional
Probab=69.04 E-value=23 Score=39.89 Aligned_cols=89 Identities=12% Similarity=0.073 Sum_probs=52.2
Q ss_pred CcEEEEEcCCch---HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhc--CCCccEEEE
Q 007327 10 TTQALFYNYKQL---PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAA--HPMADVFIN 84 (608)
Q Consensus 10 ~s~avv~g~~~~---~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~--~p~vDlavi 84 (608)
+.++|| |+++. +.+.+.+..+. |..+++-++ ..... .++.|+|++.+.+++... ...+|. +|
T Consensus 147 rrvLII-GaG~~a~~l~~~L~~~~~~---g~~vVGfID-d~~~~-------~~i~gvPVlg~~d~l~~~~~~~~v~v-II 213 (476)
T PRK15204 147 KKTIIL-GSGQNARGAYSALQSEEMM---GFDVIAFFD-TDASD-------AEINMLPVIKDTEIIWDLNRTGDVHY-IL 213 (476)
T ss_pred CeEEEE-ECCHHHHHHHHHHHhCccC---CcEEEEEEc-CCccc-------cccCCCcccCCHHHHHHHHHhCCCcE-EE
Confidence 445666 55444 56666654222 334666665 32211 368899999887654211 113675 78
Q ss_pred eccChh--cHHHHHHHhcCCCCCEEEEec
Q 007327 85 FSSFRS--AAASSMAALKQPTIRVVAIIA 111 (608)
Q Consensus 85 ~vp~~~--~~~~~le~~~~~gv~~~viis 111 (608)
++|... ....+++.|.+.|++.+.++.
T Consensus 214 Aip~~~~~~r~~il~~l~~~gv~~V~vIP 242 (476)
T PRK15204 214 AYEYTELEKTHFWLRELSKHHCRSVTVVP 242 (476)
T ss_pred EeCcCcHHHHHHHHHHHhhcCCeEEEEeC
Confidence 888532 345678888877887666655
No 208
>COG3268 Uncharacterized conserved protein [Function unknown]
Probab=69.01 E-value=6.6 Score=41.96 Aligned_cols=122 Identities=16% Similarity=0.100 Sum_probs=74.1
Q ss_pred CCcEEEEE--cCCch-HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeeccccc-C-CHHHHhhcCCCccEEE
Q 007327 9 KTTQALFY--NYKQL-PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVH-S-TVEAACAAHPMADVFI 83 (608)
Q Consensus 9 p~s~avv~--g~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y-~-sv~~i~~~~p~vDlav 83 (608)
|--++|.| |+.|+ +.+.+...+ .+..+++-| +.+-+.....+|.+-.-.|+. + .+++... .+++++
T Consensus 6 e~d~iiYGAtGy~G~lvae~l~~~g-----~~~aLAgRs-~~kl~~l~~~LG~~~~~~p~~~p~~~~~~~~---~~~VVl 76 (382)
T COG3268 6 EYDIIIYGATGYAGGLVAEYLAREG-----LTAALAGRS-SAKLDALRASLGPEAAVFPLGVPAALEAMAS---RTQVVL 76 (382)
T ss_pred ceeEEEEccccchhHHHHHHHHHcC-----CchhhccCC-HHHHHHHHHhcCccccccCCCCHHHHHHHHh---cceEEE
Confidence 33566665 45566 777888776 445666665 433222223345555555555 2 3344333 479999
Q ss_pred EeccChhc-HHHHHHHhcCCCCCEEEEecCC--CCHHHHHHHHHHHHhCCCeEEcCCccccc
Q 007327 84 NFSSFRSA-AASSMAALKQPTIRVVAIIAEG--VPEADTKQLIAYARSNNKVVIGPATVGGI 142 (608)
Q Consensus 84 i~vp~~~~-~~~~le~~~~~gv~~~viis~G--f~e~~~~~l~~~a~~~g~rvlGPNc~Gi~ 142 (608)
-||-+... -..++++|.+.|+..+=| |+- |-|..++.--+.|++.|++|+ ||-||=
T Consensus 77 ncvGPyt~~g~plv~aC~~~GTdY~Di-TGEi~~fe~~i~~yh~~A~~~Ga~Ii--~~cGFD 135 (382)
T COG3268 77 NCVGPYTRYGEPLVAACAAAGTDYADI-TGEIMFFENSIDLYHAQAADAGARII--PGCGFD 135 (382)
T ss_pred eccccccccccHHHHHHHHhCCCeeec-cccHHHHHHHHHHHHHHHHhcCCEEe--ccCCCC
Confidence 99887432 246899999999998766 432 222233333677999999997 666773
No 209
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=68.66 E-value=5.8 Score=37.10 Aligned_cols=77 Identities=16% Similarity=0.092 Sum_probs=40.2
Q ss_pred HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhh---cCCCccEEEEeccCh--hcHHHHH
Q 007327 22 PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACA---AHPMADVFINFSSFR--SAAASSM 96 (608)
Q Consensus 22 ~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~---~~p~vDlavi~vp~~--~~~~~~l 96 (608)
+.+.+.+.... |-+.++-++ +.... .+.++.|+|...+++|+++ +. ++|-++|+.|.. ..+..++
T Consensus 92 ~~~~l~~~~~~---g~~vvg~~d-~~~~~-----~~~~~~~~~~lg~~~~l~~~~~~~-~id~v~ial~~~~~~~i~~ii 161 (175)
T PF13727_consen 92 LAEALRSNPRL---GYRVVGFVD-DDPSD-----RGPEIDGVPVLGDLDDLPELVREH-DIDEVIIALPWSEEEQIKRII 161 (175)
T ss_dssp HHHHHHH--SS---SEEEEEEE--S-GGG-----TT-EETTEEEE--GGGHHHHHHHH-T--EEEE--TTS-HHHHHHHH
T ss_pred HHHHHHhhhhc---CceEEEEEe-Cchhh-----ccCcccCceeEcCHHHHHHHHHhC-CCCEEEEEcCccCHHHHHHHH
Confidence 56666553221 334666665 32221 1246788998888777654 34 499999999884 3345778
Q ss_pred HHhcCCCCCEEE
Q 007327 97 AALKQPTIRVVA 108 (608)
Q Consensus 97 e~~~~~gv~~~v 108 (608)
++|.+.|++--+
T Consensus 162 ~~~~~~~v~v~~ 173 (175)
T PF13727_consen 162 EELENHGVRVRV 173 (175)
T ss_dssp HHHHTTT-EEEE
T ss_pred HHHHhCCCEEEE
Confidence 888888876544
No 210
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=68.00 E-value=66 Score=33.71 Aligned_cols=152 Identities=16% Similarity=0.039 Sum_probs=82.1
Q ss_pred CcEEEEEcCCch--HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecc
Q 007327 10 TTQALFYNYKQL--PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSS 87 (608)
Q Consensus 10 ~s~avv~g~~~~--~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi~vp 87 (608)
++++|+||=... +.+.|.+.||. |..+-+|... ....|+..+++.++... +.|.+|.+||
T Consensus 2 ~~~~v~ggd~r~~~~~~~l~~~g~~-------v~~~g~~~~~--------~~~~~~~~~~~~~~~~~---~~~~~i~p~~ 63 (287)
T TIGR02853 2 IHIAVIGGDARQLELIRKLEELDAK-------ISLIGFDQLE--------DGFTGAVKCELLELDLT---TLDVVILPVP 63 (287)
T ss_pred cEEEEEcccHHHHHHHHHHHHCCCE-------EEEEeccccc--------cccccceeecchhhhhc---cCCEEEECCc
Confidence 467888662222 88999999875 3333334232 13557888888887554 5899999999
Q ss_pred Chhc---------------HHHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCeEE----cCCcccccccCccc
Q 007327 88 FRSA---------------AASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVI----GPATVGGIQAGAFK 148 (608)
Q Consensus 88 ~~~~---------------~~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~rvl----GPNc~Gi~~~~~~~ 148 (608)
.... -.+.++.+. +..++ ..|+.-. .+.+.|+++|++++ --|. -++|....-
T Consensus 64 ~~~~~~~i~~~~~~~~~~l~~~~l~~~~----~~~~~-~~G~~~~---~l~~~a~~~gi~v~~~~~~~~v-a~~n~~~~A 134 (287)
T TIGR02853 64 GTSHDGKVATVFSNEKVVLTPELLESTK----GHCTI-YVGISNP---YLEQLAADAGVKLIELFERDDV-AIYNSIPTA 134 (287)
T ss_pred cccCCceEecccccCCccccHHHHHhcC----CCCEE-EEecCCH---HHHHHHHHCCCeEEEEEeccce-EEEccHhHH
Confidence 4321 134555554 22333 4455432 34448899999877 2222 123322100
Q ss_pred ccccCCcccccccc-cCCCCCcEEEEecChhHHHHHHHHHHhcCC
Q 007327 149 IGDTAGTIDNIIHC-KLYRPGSVGFVSKSGGMSNELYNTIARVTD 192 (608)
Q Consensus 149 l~~~~~~~~~~~p~-~~~~~G~valvSQSG~l~~~~~~~~~~~g~ 192 (608)
-..+...... ..--.|.-..|--.|.++..+...+...|.
T Consensus 135 ----e~ai~~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~ 175 (287)
T TIGR02853 135 ----EGAIMMAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSALGA 175 (287)
T ss_pred ----HHHHHHHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHHCCC
Confidence 0011000000 001235444444558899999988876654
No 211
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=67.86 E-value=19 Score=38.71 Aligned_cols=95 Identities=13% Similarity=0.035 Sum_probs=49.7
Q ss_pred CcEEEEE--cCCch-HHHHHhhCcccCCCCCCcEEEEeCCCCCC-ccccccCceeecc--cccCCHHHHhhcCCCccEEE
Q 007327 10 TTQALFY--NYKQL-PIQRMLDFDFLCGRETPSVAGIINPGAEG-FQKLFFGQEEIAI--PVHSTVEAACAAHPMADVFI 83 (608)
Q Consensus 10 ~s~avv~--g~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p~~~~-~~~~~~g~ev~G~--~~y~sv~~i~~~~p~vDlav 83 (608)
.+++|+| |..|+ +++.+.+.. +.+++..++ ....+ ......+ .+.++ ..|.++++. ... ++|+++
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p-----~~elv~v~~-~~~~g~~l~~~~~-~~~~~~~~~~~~~~~~-~~~-~vD~Vf 73 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHP-----EVEIVAVTS-RSSAGKPLSDVHP-HLRGLVDLVLEPLDPE-ILA-GADVVF 73 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCC-----CceEEEEEC-ccccCcchHHhCc-ccccccCceeecCCHH-Hhc-CCCEEE
Confidence 4688885 23343 778787763 234555554 32221 1111000 01111 134444432 112 489999
Q ss_pred EeccChhcHHHHHHHhcCCCCCEEEEecCCCC
Q 007327 84 NFSSFRSAAASSMAALKQPTIRVVAIIAEGVP 115 (608)
Q Consensus 84 i~vp~~~~~~~~le~~~~~gv~~~viis~Gf~ 115 (608)
+|+|... ...+..++.++|+ .+|=.|+.|.
T Consensus 74 ~alP~~~-~~~~v~~a~~aG~-~VID~S~~fR 103 (343)
T PRK00436 74 LALPHGV-SMDLAPQLLEAGV-KVIDLSADFR 103 (343)
T ss_pred ECCCcHH-HHHHHHHHHhCCC-EEEECCcccC
Confidence 9999975 5566666765664 3555576674
No 212
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=67.70 E-value=7.8 Score=44.82 Aligned_cols=81 Identities=17% Similarity=0.233 Sum_probs=53.2
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhcCCceeEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCc----cHHHHH
Q 007327 166 RPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGR----DEYSLV 241 (608)
Q Consensus 166 ~~G~valvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~T~~I~ly~E~g~~----~~~~f~ 241 (608)
..++|++|.-+|.+... .+- .-.+|. -++.+.|+...+||++|+|+|.+. +.. ..+...
T Consensus 306 ~~~~vavI~~~G~I~~~-------~~~----~~~~~~-----~~~~~~l~~a~~D~~VkaIVLrin-SpGGs~~ase~i~ 368 (584)
T TIGR00705 306 VQDKIGIVHLEGPIADG-------RDT----EGNTGG-----DTVAALLRVARSDPDIKAVVLRIN-SPGGSVFASEIIR 368 (584)
T ss_pred CCCeEEEEEEEEEEcCC-------CCc----ccccCH-----HHHHHHHHHHhhCCCceEEEEEec-CCCCCHHHHHHHH
Confidence 46789999999977421 110 001122 246788999999999999999998 332 123444
Q ss_pred HHHHhCC-CCCCEEEEEeCCCcc
Q 007327 242 EALKQGK-VNKPVVAWVSGTCAR 263 (608)
Q Consensus 242 ~~~r~a~-~~KPVvvlk~Grs~~ 263 (608)
+++++++ .+||||+.-.|....
T Consensus 369 ~~i~~~~~~gKPVva~~~g~aaS 391 (584)
T TIGR00705 369 RELARAQARGKPVIVSMGAMAAS 391 (584)
T ss_pred HHHHHHHhCCCcEEEEECCcccc
Confidence 4555554 569999998775544
No 213
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=67.65 E-value=71 Score=33.61 Aligned_cols=150 Identities=14% Similarity=0.071 Sum_probs=81.6
Q ss_pred CcEEEEEcCCch--HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecc
Q 007327 10 TTQALFYNYKQL--PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSS 87 (608)
Q Consensus 10 ~s~avv~g~~~~--~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi~vp 87 (608)
.+++|+||=... +++.|.+.||. |....||... -+..|..++.+.+++.. +.|+++..+|
T Consensus 3 ~~~~v~ggd~r~~~~~~~l~~~G~~-------v~~~g~~~~~--------~~~~g~~~~~~~~~~~~---~ad~ii~~~p 64 (296)
T PRK08306 3 KHIAVIGGDARQLELIRKLVELGAK-------VSLVGFDQLD--------HGFTGATKSSSLEEALS---DVDVIILPVP 64 (296)
T ss_pred cEEEEEcCcHHHHHHHHHHHHCCCE-------EEEEeccccc--------cccCCceeeccHHHHhc---cCCEEEECCc
Confidence 467888662222 88999999875 2223345332 13568899988888665 4799988877
Q ss_pred Chh------c---------HHHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCeEEcCCcccc-----cccCcc
Q 007327 88 FRS------A---------AASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVGG-----IQAGAF 147 (608)
Q Consensus 88 ~~~------~---------~~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~rvlGPNc~Gi-----~~~~~~ 147 (608)
... . -.+.++.+. +| .+++.+-+.+. +.+.+++.|++++ |.+.. .|.-..
T Consensus 65 ~~~~~~~i~~~~~~~~~~~~~~~l~~l~-~~---~~v~~G~~~~~----~~~~~~~~gi~~~--~~~~~~~~~~~ns~~~ 134 (296)
T PRK08306 65 GTNDEGNVDTVFSNEKLVLTEELLELTP-EH---CTIFSGIANPY----LKELAKETNRKLV--ELFERDDVAILNSIPT 134 (296)
T ss_pred cccCCceeeccccccCCcchHHHHHhcC-CC---CEEEEecCCHH----HHHHHHHCCCeEE--EEeccchhhhhccHhH
Confidence 621 1 134566665 55 22333333332 3456789999986 44432 111110
Q ss_pred cccccCCcccccc-c-ccCCCCCcEEEEecChhHHHHHHHHHHhcCC
Q 007327 148 KIGDTAGTIDNII-H-CKLYRPGSVGFVSKSGGMSNELYNTIARVTD 192 (608)
Q Consensus 148 ~l~~~~~~~~~~~-p-~~~~~~G~valvSQSG~l~~~~~~~~~~~g~ 192 (608)
. .+.+.... . ......-+|.++. .|.++..+...++..|.
T Consensus 135 a----egav~~a~~~~~~~l~g~kvlViG-~G~iG~~~a~~L~~~Ga 176 (296)
T PRK08306 135 A----EGAIMMAIEHTPITIHGSNVLVLG-FGRTGMTLARTLKALGA 176 (296)
T ss_pred H----HHHHHHHHHhCCCCCCCCEEEEEC-CcHHHHHHHHHHHHCCC
Confidence 0 00000000 0 0011233455555 58899888888876553
No 214
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=67.15 E-value=11 Score=35.40 Aligned_cols=50 Identities=30% Similarity=0.382 Sum_probs=36.8
Q ss_pred HHHHHHHhhcCCCccEEEEEEecCC-cc---HHHHHHHHHhCCCCCCEEEEEeCCCc
Q 007327 210 LSDHILRFNNIPQVKMMVVLGELGG-RD---EYSLVEALKQGKVNKPVVAWVSGTCA 262 (608)
Q Consensus 210 ~~d~l~~l~~Dp~T~~I~ly~E~g~-~~---~~~f~~~~r~a~~~KPVvvlk~Grs~ 262 (608)
+.+.|+.+.+|++++.|++++. +. .+ ..++.+++++. +||||++--|...
T Consensus 16 l~~~l~~a~~d~~~~~ivl~~~-s~Gg~~~~~~~i~~~l~~~--~kpvva~~~g~~~ 69 (161)
T cd00394 16 LAAQIRFAEADNSVKAIVLEVN-TPGGRVDAGMNIVDALQAS--RKPVIAYVGGQAA 69 (161)
T ss_pred HHHHHHHHHhCCCCceEEEEEE-CCCcCHHHHHHHHHHHHHh--CCCEEEEECChhH
Confidence 5677788889999999999998 43 22 34556666653 4999999876643
No 215
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=65.27 E-value=29 Score=38.07 Aligned_cols=115 Identities=12% Similarity=0.104 Sum_probs=70.5
Q ss_pred CcEEEEE-c-CCchHHHHHhhCcccCCCCCCcEEEEeCCCCCCcccccc-----CceeecccccCCHHHHhhcCCCccEE
Q 007327 10 TTQALFY-N-YKQLPIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFF-----GQEEIAIPVHSTVEAACAAHPMADVF 82 (608)
Q Consensus 10 ~s~avv~-g-~~~~~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~-----g~ev~G~~~y~sv~~i~~~~p~vDla 82 (608)
..+.||| | ++.++.-|+.+.||. |...| -... ..++|. +..+ +|+| |++|.....-++--.
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~G~~-------VavyN-Rt~~-ktd~f~~~~~~~k~i--~~~~-sieefV~~Le~PRkI 71 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADHGYT-------VAVYN-RTTE-KTDEFLAERAKGKNI--VPAY-SIEEFVASLEKPRKI 71 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhcCce-------EEEEe-CCHH-HHHHHHHhCccCCCc--cccC-cHHHHHHHhcCCceE
Confidence 4567775 3 444588999999986 55555 2111 122221 1122 4555 788877643346778
Q ss_pred EEeccChhcHHHHHHHhcCCCCCEEEEecCC---CCHHHHHHHHHHHHhCCCeEEcCCc
Q 007327 83 INFSSFRSAAASSMAALKQPTIRVVAIIAEG---VPEADTKQLIAYARSNNKVVIGPAT 138 (608)
Q Consensus 83 vi~vp~~~~~~~~le~~~~~gv~~~viis~G---f~e~~~~~l~~~a~~~g~rvlGPNc 138 (608)
++.|-+...|++.++++.-.==|.=|||-+| |.. .+++. +..++.|+.++|-.-
T Consensus 72 ~lMVkAG~~VD~~I~~L~p~Le~gDIiIDGGNs~y~D-T~RR~-~eL~~~Gi~FvG~GV 128 (473)
T COG0362 72 LLMVKAGTPVDAVIEQLLPLLEKGDIIIDGGNSHYKD-TIRRN-KELSEKGILFVGMGV 128 (473)
T ss_pred EEEEecCCcHHHHHHHHHhhcCCCCEEEeCCCcCCch-HHHHH-HHHHhcCCeEEeccc
Confidence 8888887778888888775445566777765 433 23333 334568999998643
No 216
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=64.67 E-value=1.3e+02 Score=28.69 Aligned_cols=189 Identities=7% Similarity=0.012 Sum_probs=101.8
Q ss_pred cccccCCHHHHhhc--CCCccEEEEeccChh-cHHHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCeEEcCCc
Q 007327 62 AIPVHSTVEAACAA--HPMADVFINFSSFRS-AAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPAT 138 (608)
Q Consensus 62 G~~~y~sv~~i~~~--~p~vDlavi~vp~~~-~~~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~rvlGPNc 138 (608)
+...+..+.+...+ . ++++.+....... .....++.+.+.++.++++... ...... +.+.+++.++.++.+++
T Consensus 15 ~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~--~~~~~~-~~~~~~~~~ip~v~~~~ 90 (269)
T cd01391 15 GAQLLAGIELAAEEIGR-GLEVILADSQSDPERALEALRDLIQQGVDGIIGPPS--SSSALA-VVELAAAAGIPVVSLDA 90 (269)
T ss_pred HHHHHHHHHHHHHHhCC-ceEEEEecCCCCHHHHHHHHHHHHHcCCCEEEecCC--CHHHHH-HHHHHHHcCCcEEEecC
Confidence 34445555555444 3 3666655443321 2334555555568877766443 222222 77788899999988876
Q ss_pred cccc---ccCcccccccCCccccc---c--cccCCCCCcEEEEecCh-hHH----HHHHHHHHhcCCceeEEeecCCCCC
Q 007327 139 VGGI---QAGAFKIGDTAGTIDNI---I--HCKLYRPGSVGFVSKSG-GMS----NELYNTIARVTDGIYEGIAIGGDVF 205 (608)
Q Consensus 139 ~Gi~---~~~~~~l~~~~~~~~~~---~--p~~~~~~G~valvSQSG-~l~----~~~~~~~~~~g~G~s~~vs~Gn~~~ 205 (608)
..-. .+....+ ..+.... . -.......+|+++.... ... ..+.+.+.+.|+-+..........
T Consensus 91 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 166 (269)
T cd01391 91 TAPDLTGYPYVFRV---GPDNEQAGEAAAEYLAEKGWKRVALIYGDDGAYGRERLEGFKAALKKAGIEVVAIEYGDLDT- 166 (269)
T ss_pred CCCccCCCceEEEE---cCCcHHHHHHHHHHHHHhCCceEEEEecCCcchhhHHHHHHHHHHHhcCcEEEeccccCCCc-
Confidence 4211 0110011 0000000 0 00012477899997766 232 223344555565444444444443
Q ss_pred CCCCHHHHHHHhhcCCCccEEEEEEecCCccHHHHHHHHHhCCCC-CCEEEEEeCCCc
Q 007327 206 PGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVN-KPVVAWVSGTCA 262 (608)
Q Consensus 206 ~dv~~~d~l~~l~~Dp~T~~I~ly~E~g~~~~~~f~~~~r~a~~~-KPVvvlk~Grs~ 262 (608)
+-+...+.+.+.+.|+.++|++... .....+++++++.... +.+.++-.+.+.
T Consensus 167 -~~~~~~~~~~l~~~~~~~~i~~~~~---~~a~~~~~~~~~~g~~~~~~~ii~~~~~~ 220 (269)
T cd01391 167 -EKGFQALLQLLKAAPKPDAIFACND---EMAAGALKAAREAGLTPGDISIIGFDGSP 220 (269)
T ss_pred -cccHHHHHHHHhcCCCCCEEEEcCc---hHHHHHHHHHHHcCCCCCCCEEEeccccc
Confidence 4678888999999888888877733 5667888888886532 445554444433
No 217
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=64.26 E-value=48 Score=30.81 Aligned_cols=61 Identities=13% Similarity=0.081 Sum_probs=42.8
Q ss_pred CccEEEEeccChh---cHHHHHHHhcCCCCCEEEEecCCC---CHHHHHHHHHHHHhCCC-eEEcCCc
Q 007327 78 MADVFINFSSFRS---AAASSMAALKQPTIRVVAIIAEGV---PEADTKQLIAYARSNNK-VVIGPAT 138 (608)
Q Consensus 78 ~vDlavi~vp~~~---~~~~~le~~~~~gv~~~viis~Gf---~e~~~~~l~~~a~~~g~-rvlGPNc 138 (608)
++|++.++.-... ....+++.+.+.+.+.+.++-+|- ++.+..+..+.+++.|+ ++.+|++
T Consensus 54 ~~d~V~lS~~~~~~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~ 121 (137)
T PRK02261 54 DADAILVSSLYGHGEIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGT 121 (137)
T ss_pred CCCEEEEcCccccCHHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcCCCEEECcCC
Confidence 4799888763322 245677888888776666666664 34467788888899997 5888876
No 218
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=63.96 E-value=16 Score=39.10 Aligned_cols=108 Identities=16% Similarity=0.095 Sum_probs=66.6
Q ss_pred CCCCcEEEEE-cCCch-HHHHHhhCcccCCCCCCcEEEEeCC--CCCCccccccCceeecccccCCHHHHhhcCCCccEE
Q 007327 7 FSKTTQALFY-NYKQL-PIQRMLDFDFLCGRETPSVAGIINP--GAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVF 82 (608)
Q Consensus 7 ~~p~s~avv~-g~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p--~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDla 82 (608)
++=+++.||| |.-|+ +.+.+..+|+. |.+++ | ++. . ....|..-..++++++. +.|..
T Consensus 140 l~gkTvGIiG~G~IG~~va~~l~afgm~-------v~~~d-~~~~~~-~------~~~~~~~~~~~Ld~lL~---~sDiv 201 (324)
T COG0111 140 LAGKTVGIIGLGRIGRAVAKRLKAFGMK-------VIGYD-PYSPRE-R------AGVDGVVGVDSLDELLA---EADIL 201 (324)
T ss_pred ccCCEEEEECCCHHHHHHHHHHHhCCCe-------EEEEC-CCCchh-h------hccccceecccHHHHHh---hCCEE
Confidence 4456888885 33344 77788888764 45666 5 221 0 24566677789999987 47999
Q ss_pred EEeccChhcHHHHHH--HhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCe
Q 007327 83 INFSSFRSAAASSMA--ALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKV 132 (608)
Q Consensus 83 vi~vp~~~~~~~~le--~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~r 132 (608)
++.+|-......++. .+++.+-.+++|-++-=+-.+++.|++..++..++
T Consensus 202 ~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~ 253 (324)
T COG0111 202 TLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIA 253 (324)
T ss_pred EEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcc
Confidence 999998654433332 23322222344445432333788898888876655
No 219
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=63.87 E-value=36 Score=37.81 Aligned_cols=88 Identities=13% Similarity=0.022 Sum_probs=51.4
Q ss_pred CcEEEEEcCCch---HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhh---cCCCccEEE
Q 007327 10 TTQALFYNYKQL---PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACA---AHPMADVFI 83 (608)
Q Consensus 10 ~s~avv~g~~~~---~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~---~~p~vDlav 83 (608)
+.+.|+ |.+.. +.+.+.+.... |...++-++..+.. .|.. .|+|++.+++|+.. +. ++|.++
T Consensus 129 ~rvLIi-Gag~~~~~l~~~L~~~~~~---g~~vvG~idd~~~~------~~~~-~gvpVlg~~~dl~~~i~~~-~vd~Vi 196 (451)
T TIGR03023 129 RRVLIV-GAGELGRRLAERLARNPEL---GYRVVGFFDDRPDA------RTGV-RGVPVLGKLDDLEELIREG-EVDEVY 196 (451)
T ss_pred CcEEEE-eCCHHHHHHHHHHHhCccC---CcEEEEEEeCCCcc------cccc-CCCCccCCHHHHHHHHHhc-CCCEEE
Confidence 456666 54433 66666653211 33466666521111 1234 88999988777543 34 589999
Q ss_pred EeccChh--cHHHHHHHhcCCCCCEEEE
Q 007327 84 NFSSFRS--AAASSMAALKQPTIRVVAI 109 (608)
Q Consensus 84 i~vp~~~--~~~~~le~~~~~gv~~~vi 109 (608)
|++|... ....+++.|.+.|++..++
T Consensus 197 IA~p~~~~~~~~~ll~~~~~~gv~V~vv 224 (451)
T TIGR03023 197 IALPLAAEDRILELLDALEDLTVDVRLV 224 (451)
T ss_pred EeeCcccHHHHHHHHHHHHhcCCEEEEe
Confidence 9988743 2346777887777765444
No 220
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=63.85 E-value=83 Score=32.75 Aligned_cols=136 Identities=13% Similarity=0.171 Sum_probs=76.7
Q ss_pred cccCCHHHHhhcCCCccEEEEec--c-ChhcHHHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCe---EEcCC
Q 007327 64 PVHSTVEAACAAHPMADVFINFS--S-FRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKV---VIGPA 137 (608)
Q Consensus 64 ~~y~sv~~i~~~~p~vDlavi~v--p-~~~~~~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~r---vlGPN 137 (608)
.++.-++++-+..+++-+++..- | -..-++..++.|.+.||.++++. -.|.+..+++.+.|+++|+. ++=||
T Consensus 80 ~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivp--DLP~ee~~~~~~~~~~~gi~~I~lvaPt 157 (265)
T COG0159 80 DTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVP--DLPPEESDELLKAAEKHGIDPIFLVAPT 157 (265)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeC--CCChHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 45555555543322333444321 1 11225677889999999999874 36666677899999999974 55554
Q ss_pred cccccccCcccccccCCcccccccccCCCCCcEEEEecChhHHHHHHHHHHhcCCceeEEeec----CCCCCCCCCHHHH
Q 007327 138 TVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAI----GGDVFPGSTLSDH 213 (608)
Q Consensus 138 c~Gi~~~~~~~l~~~~~~~~~~~p~~~~~~G~valvSQSG~l~~~~~~~~~~~g~G~s~~vs~----Gn~~~~dv~~~d~ 213 (608)
+ +.. .+....+..-||-|.||. |-+.-..-.+.+.
T Consensus 158 t-----~~~------------------------------------rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~ 196 (265)
T COG0159 158 T-----PDE------------------------------------RLKKIAEAASGFIYYVSRMGVTGARNPVSADVKEL 196 (265)
T ss_pred C-----CHH------------------------------------HHHHHHHhCCCcEEEEecccccCCCcccchhHHHH
Confidence 3 111 223334455566666665 3332001125666
Q ss_pred HHHhhcCCCccEEEEEEecCCccHHHHHHHHH
Q 007327 214 ILRFNNIPQVKMMVVLGELGGRDEYSLVEALK 245 (608)
Q Consensus 214 l~~l~~Dp~T~~I~ly~E~g~~~~~~f~~~~r 245 (608)
++.+.+--++.+++-+ |+++++...+.++
T Consensus 197 v~~vr~~~~~Pv~vGF---GIs~~e~~~~v~~ 225 (265)
T COG0159 197 VKRVRKYTDVPVLVGF---GISSPEQAAQVAE 225 (265)
T ss_pred HHHHHHhcCCCeEEec---CcCCHHHHHHHHH
Confidence 6666665555555544 6777666655544
No 221
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=63.17 E-value=41 Score=37.17 Aligned_cols=107 Identities=11% Similarity=-0.086 Sum_probs=62.4
Q ss_pred CCCCcEEEEE-cCCch-HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEE
Q 007327 7 FSKTTQALFY-NYKQL-PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFIN 84 (608)
Q Consensus 7 ~~p~s~avv~-g~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi 84 (608)
+.=+++.||| |.-|+ +.+.+..+|+. |.+++ |... ....+.....+++|+.. +.|.+++
T Consensus 149 L~gktvGIiG~G~IG~~vA~~~~~fGm~-------V~~~d-~~~~--------~~~~~~~~~~~l~ell~---~sDiVsl 209 (409)
T PRK11790 149 VRGKTLGIVGYGHIGTQLSVLAESLGMR-------VYFYD-IEDK--------LPLGNARQVGSLEELLA---QSDVVSL 209 (409)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCE-------EEEEC-CCcc--------cccCCceecCCHHHHHh---hCCEEEE
Confidence 4556888885 33344 77777777643 55666 5321 11223334458999876 4799999
Q ss_pred eccChhcHHHHH--HHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCe
Q 007327 85 FSSFRSAAASSM--AALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKV 132 (608)
Q Consensus 85 ~vp~~~~~~~~l--e~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~r 132 (608)
.+|.......++ +.....+-.+++|-++-=+-.+++.|.+..++..++
T Consensus 210 h~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~ 259 (409)
T PRK11790 210 HVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLA 259 (409)
T ss_pred cCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCce
Confidence 999754332222 223323333444444433334888898888876654
No 222
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=63.10 E-value=1.6e+02 Score=31.78 Aligned_cols=176 Identities=14% Similarity=0.069 Sum_probs=104.3
Q ss_pred ChhcHHHHHHHhcCCCCCEEEEecCCCCHH---HHHHHHHHHH-hCCCeEEcCCcccccccCcccccccCCccc-cccc-
Q 007327 88 FRSAAASSMAALKQPTIRVVAIIAEGVPEA---DTKQLIAYAR-SNNKVVIGPATVGGIQAGAFKIGDTAGTID-NIIH- 161 (608)
Q Consensus 88 ~~~~~~~~le~~~~~gv~~~viis~Gf~e~---~~~~l~~~a~-~~g~rvlGPNc~Gi~~~~~~~l~~~~~~~~-~~~p- 161 (608)
.+.....+.+.+.+.+-+.++|+++..++. |.+.+.+.++ +.|++++--+|-|+-.....+.......+. ...+
T Consensus 65 ~e~l~~~i~~~~~~~~p~~i~v~~tc~~~liGdDi~~v~~~~~~~~~~~vv~~~~~gf~~~~~~G~~~a~~~~~~~~~~~ 144 (399)
T cd00316 65 GEKLLEAIINELKRYKPKVIFVYTTCTTELIGDDIEAVAKEASKEIGIPVVPASTPGFRGSQSAGYDAAVKAIIDHLVGT 144 (399)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEecCchhhhhccCHHHHHHHHHHhhCCceEEeeCCCCcccHHHHHHHHHHHHHHHHhcc
Confidence 444566777777766778999999988887 4444443333 468999999998887322101100000011 1111
Q ss_pred --ccCCCCCcEEEEecChhH---HHHHHHHHHhcCCceeEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCcc
Q 007327 162 --CKLYRPGSVGFVSKSGGM---SNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRD 236 (608)
Q Consensus 162 --~~~~~~G~valvSQSG~l---~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~T~~I~ly~E~g~~~ 236 (608)
.....++.|-++.-+... ..++-..+++.|+.+..+.+.|... .|+ .+-++-+..++. +-..
T Consensus 145 ~~~~~~~~~~vNlig~~~~~~~d~~el~~ll~~~G~~v~~~~~~~~s~------~~i----~~~~~A~~nlv~---~~~~ 211 (399)
T cd00316 145 AEPEETEPGSVNLIGGYNLGGGDLRELKRLLEEMGIRVNALFDGGTTV------EEL----RELGNAKLNLVL---CRES 211 (399)
T ss_pred cCcCCCCCCcEEEECCCCCchhhHHHHHHHHHHcCCcEEEEcCCCCCH------HHH----HhhccCcEEEEe---cHhH
Confidence 123467789888866653 3677778888888888887776554 333 344444443332 2224
Q ss_pred HHHHHHHHHhCCCCCCEEEEEeCCCccCcccccccCCCCCcCCCCcchHHHHHHHHHHcCC
Q 007327 237 EYSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGA 297 (608)
Q Consensus 237 ~~~f~~~~r~a~~~KPVvvlk~Grs~~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaGv 297 (608)
+..+.+.+++- .+.|.+... .-| + .++++-+.++.+..|.
T Consensus 212 g~~~a~~l~~~-~g~p~~~~~----p~G------------~----~~t~~~l~~i~~~~g~ 251 (399)
T cd00316 212 GLYLARYLEEK-YGIPYILIN----PIG------------L----EATDAFLRKLAELFGI 251 (399)
T ss_pred HHHHHHHHHHH-hCCCeEEeC----CcC------------H----HHHHHHHHHHHHHhCC
Confidence 56677776652 578877653 322 1 1344777888888886
No 223
>PRK10949 protease 4; Provisional
Probab=62.29 E-value=12 Score=43.46 Aligned_cols=81 Identities=25% Similarity=0.355 Sum_probs=54.1
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhcCCceeEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCcc----HHHHH
Q 007327 166 RPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRD----EYSLV 241 (608)
Q Consensus 166 ~~G~valvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~T~~I~ly~E~g~~~----~~~f~ 241 (608)
..+.||+|.-+|.+... +..-| .+| .-++.+.|+-..+||++|+|+|.+. +..- .+...
T Consensus 324 ~~~~Iavi~~~G~I~~g------~~~~g-----~~~-----~~~~~~~l~~a~~D~~vkaVvLrIn-SpGGs~~ase~i~ 386 (618)
T PRK10949 324 TGGSIAVIFANGAIMDG------EETPG-----NVG-----GDTTAAQIRDARLDPKVKAIVLRVN-SPGGSVTASEVIR 386 (618)
T ss_pred CCCeEEEEEEEEEEcCC------CCcCC-----CcC-----HHHHHHHHHHHHhCCCCcEEEEEec-CCCCcHHHHHHHH
Confidence 35789999999987431 00011 112 2347888999999999999999999 4332 24455
Q ss_pred HHHHhCC-CCCCEEEEEeCCCcc
Q 007327 242 EALKQGK-VNKPVVAWVSGTCAR 263 (608)
Q Consensus 242 ~~~r~a~-~~KPVvvlk~Grs~~ 263 (608)
+++++++ .+||||+.-.+-...
T Consensus 387 ~~i~~~r~~gKPVvas~~~~aAS 409 (618)
T PRK10949 387 AELAAARAAGKPVVVSMGGMAAS 409 (618)
T ss_pred HHHHHHHhcCCcEEEEECCCCcc
Confidence 5666654 679999987555443
No 224
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=62.02 E-value=31 Score=37.76 Aligned_cols=101 Identities=10% Similarity=0.041 Sum_probs=60.5
Q ss_pred CCCCcEEEEE-cCCch-HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEE
Q 007327 7 FSKTTQALFY-NYKQL-PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFIN 84 (608)
Q Consensus 7 ~~p~s~avv~-g~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi 84 (608)
+.-+++.||| |.-|+ +.+.+..+|+. |.+.+ |.+.. +-.+ ..|.+++++.. +.|++++
T Consensus 114 L~gktvGIIG~G~IG~~vA~~l~a~G~~-------V~~~d-p~~~~--------~~~~-~~~~~L~ell~---~sDiI~l 173 (378)
T PRK15438 114 LHDRTVGIVGVGNVGRRLQARLEALGIK-------TLLCD-PPRAD--------RGDE-GDFRSLDELVQ---EADILTF 173 (378)
T ss_pred cCCCEEEEECcCHHHHHHHHHHHHCCCE-------EEEEC-Ccccc--------cccc-cccCCHHHHHh---hCCEEEE
Confidence 5667899995 33344 77788878653 55667 64321 1011 14779999876 4799999
Q ss_pred eccChh-----cH----HHHHHHhcCCCCCEEEEecCCCCHH-HHHHHHHHHHhCCC
Q 007327 85 FSSFRS-----AA----ASSMAALKQPTIRVVAIIAEGVPEA-DTKQLIAYARSNNK 131 (608)
Q Consensus 85 ~vp~~~-----~~----~~~le~~~~~gv~~~viis~Gf~e~-~~~~l~~~a~~~g~ 131 (608)
.+|-.. +. ...++.+ + +.+++|-.+=++. +++.|.+..++..+
T Consensus 174 h~PLt~~g~~~T~~li~~~~l~~m---k-~gailIN~aRG~vVDe~AL~~aL~~g~~ 226 (378)
T PRK15438 174 HTPLFKDGPYKTLHLADEKLIRSL---K-PGAILINACRGAVVDNTALLTCLNEGQK 226 (378)
T ss_pred eCCCCCCcccccccccCHHHHhcC---C-CCcEEEECCCchhcCHHHHHHHHHhCCC
Confidence 898533 11 2333333 2 3445554444444 88888888877644
No 225
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=61.79 E-value=26 Score=39.96 Aligned_cols=109 Identities=13% Similarity=0.062 Sum_probs=62.6
Q ss_pred CCCCcEEEEE-cCCch-HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEE
Q 007327 7 FSKTTQALFY-NYKQL-PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFIN 84 (608)
Q Consensus 7 ~~p~s~avv~-g~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi 84 (608)
+.-+++.||| |.-|+ +.+.+..+|+. |.+++ |...... ..-.|++.. +++|+.+ +.|.+++
T Consensus 138 l~gktvgIiG~G~IG~~vA~~l~~fG~~-------V~~~d-~~~~~~~-----~~~~g~~~~-~l~ell~---~aDiV~l 200 (526)
T PRK13581 138 LYGKTLGIIGLGRIGSEVAKRAKAFGMK-------VIAYD-PYISPER-----AAQLGVELV-SLDELLA---RADFITL 200 (526)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCE-------EEEEC-CCCChhH-----HHhcCCEEE-cHHHHHh---hCCEEEE
Confidence 4556888885 33344 77788877643 56776 5221000 012345544 8999876 4799999
Q ss_pred eccChhcHHHHH--HHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCe
Q 007327 85 FSSFRSAAASSM--AALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKV 132 (608)
Q Consensus 85 ~vp~~~~~~~~l--e~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~r 132 (608)
++|.......++ +.....+-..++|-++--+-.+++.|.+..++..++
T Consensus 201 ~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~ 250 (526)
T PRK13581 201 HTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVA 250 (526)
T ss_pred ccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCee
Confidence 999864333322 222222233455545433334788888888776554
No 226
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=61.72 E-value=9.1 Score=44.29 Aligned_cols=53 Identities=17% Similarity=0.097 Sum_probs=38.7
Q ss_pred CHHHHHHHhhcCCCccEEEEEEecCCc-----cHHHHHHHHHhCC-CCCCEEEEEeCCCc
Q 007327 209 TLSDHILRFNNIPQVKMMVVLGELGGR-----DEYSLVEALKQGK-VNKPVVAWVSGTCA 262 (608)
Q Consensus 209 ~~~d~l~~l~~Dp~T~~I~ly~E~g~~-----~~~~f~~~~r~a~-~~KPVvvlk~Grs~ 262 (608)
++.+.|+...+||++|+|+|.+. +.. .-++..+++++.+ .+|||+++--+-++
T Consensus 80 ~i~~~i~~A~~D~~IkgIvL~i~-~~~g~~~~~~~ei~~ai~~fk~sgKpVvA~~~~~~s 138 (584)
T TIGR00705 80 DIVNAIRQAADDRRIEGLVFDLS-NFSGWDSPHLVEIGSALSEFKDSGKPVYAYGTNYSQ 138 (584)
T ss_pred HHHHHHHHHhcCCCceEEEEEcc-CCCCCCHHHHHHHHHHHHHHHhcCCeEEEEEccccc
Confidence 56667778889999999999998 432 2245666777765 68999998654443
No 227
>cd06374 PBP1_mGluR_groupI Ligand binding domain of the group I metabotropic glutamate receptor. Ligand binding domain of the group I metabotropic glutamate receptor, a family containing mGlu1R and mGlu5R, all of which stimulate phospholipase C (PLC) hydrolysis. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=60.47 E-value=1.4e+02 Score=33.29 Aligned_cols=130 Identities=14% Similarity=0.085 Sum_probs=77.9
Q ss_pred CCCCHHHHHHHHHHHHhCCCeEEcCCcccc--cccCcccccccCCcccccccc------------cCCCCCcEEEEecCh
Q 007327 112 EGVPEADTKQLIAYARSNNKVVIGPATVGG--IQAGAFKIGDTAGTIDNIIHC------------KLYRPGSVGFVSKSG 177 (608)
Q Consensus 112 ~Gf~e~~~~~l~~~a~~~g~rvlGPNc~Gi--~~~~~~~l~~~~~~~~~~~p~------------~~~~~G~valvSQSG 177 (608)
++..-.....+..+++..++..+.|.+-.- -+... .-+|....|. ..+.--.|++|.+..
T Consensus 123 Gp~~S~~~~ava~~~~~~~iP~Is~~ats~~ls~~~~------~p~~fRt~p~d~~~~~al~~l~~~~~W~~Vaii~~~~ 196 (472)
T cd06374 123 GPGSSSVAIQVQNLLQLFNIPQIAYSATSIDLSDKTL------FKYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEG 196 (472)
T ss_pred CCCcchHHHHHHHHhhhhcccccccccCchhhccccc------CCceEEcCCChHHHHHHHHHHHHHCCCcEEEEEEecc
Confidence 333333445677788999999998865321 11111 0111111111 113456899999987
Q ss_pred hHHHH----HHHHHHhcCCceeEEeecCCCCCCCCCHHHHHHHhhc-CCCccEEEEEEecCCccHHHHHHHHHhCCCC
Q 007327 178 GMSNE----LYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNN-IPQVKMMVVLGELGGRDEYSLVEALKQGKVN 250 (608)
Q Consensus 178 ~l~~~----~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~-Dp~T~~I~ly~E~g~~~~~~f~~~~r~a~~~ 250 (608)
..+.. +.+.+.+.|+-+......-... .+.++...+.-+.+ +|++++|++|.+ ..+.+.|++.+++....
T Consensus 197 ~yg~~~~~~~~~~~~~~gi~i~~~~~i~~~~-~~~d~~~~l~~lk~~~~da~vvv~~~~--~~~~~~~l~~a~~~g~~ 271 (472)
T cd06374 197 NYGESGMEAFKELAAHEGLCIAHSDKIYSNA-GEQSFDRLLRKLRSRLPKARVVVCFCE--GMTVRGLLMAMRRLGVG 271 (472)
T ss_pred hHHHHHHHHHHHHHHHCCeeEEEEEEecCCC-chHHHHHHHHHHHhcCCCcEEEEEEec--hHHHHHHHHHHHHhcCC
Confidence 76654 3445566676666554442211 14566777777776 799999999877 34678899998886544
No 228
>PRK10949 protease 4; Provisional
Probab=60.37 E-value=11 Score=44.00 Aligned_cols=48 Identities=19% Similarity=0.110 Sum_probs=35.4
Q ss_pred CHHHHHHHhhcCCCccEEEEEEecCCc--c---HHHHHHHHHhCC-CCCCEEEEE
Q 007327 209 TLSDHILRFNNIPQVKMMVVLGELGGR--D---EYSLVEALKQGK-VNKPVVAWV 257 (608)
Q Consensus 209 ~~~d~l~~l~~Dp~T~~I~ly~E~g~~--~---~~~f~~~~r~a~-~~KPVvvlk 257 (608)
++.+.|+...+||+++.|+|.+. +.. . -++..+++++.+ .+||||++-
T Consensus 99 div~~i~~Aa~D~rIkgivL~i~-s~gG~~~a~~~eI~~ai~~fk~sGKpVvA~~ 152 (618)
T PRK10949 99 DIVNTIRQAKDDRNITGIVLDLK-NFAGADQPSMQYIGKALREFRDSGKPVYAVG 152 (618)
T ss_pred HHHHHHHHHhcCCCceEEEEEeC-CCCCccHHHHHHHHHHHHHHHHhCCeEEEEe
Confidence 45566667779999999999999 542 1 245666776665 689999984
No 229
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=60.17 E-value=35 Score=31.59 Aligned_cols=57 Identities=16% Similarity=0.169 Sum_probs=38.9
Q ss_pred CccEEEEeccCh---hcHHHHHHHhcCCCCCEEEEecCC-CCHHHHHHHHHHHHhCCC-eEEcCCc
Q 007327 78 MADVFINFSSFR---SAAASSMAALKQPTIRVVAIIAEG-VPEADTKQLIAYARSNNK-VVIGPAT 138 (608)
Q Consensus 78 ~vDlavi~vp~~---~~~~~~le~~~~~gv~~~viis~G-f~e~~~~~l~~~a~~~g~-rvlGPNc 138 (608)
++|.+++|.-.. ...+.+++++.++|.+.+.++.+| .++.++++ .++.|+ ++++|.+
T Consensus 53 ~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~----l~~~Gvd~~~~~gt 114 (132)
T TIGR00640 53 DVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQDFDE----LKEMGVAEIFGPGT 114 (132)
T ss_pred CCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHH----HHHCCCCEEECCCC
Confidence 489998876443 234678888888887666677777 44434444 456787 6888876
No 230
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=59.79 E-value=29 Score=37.00 Aligned_cols=80 Identities=16% Similarity=0.034 Sum_probs=44.7
Q ss_pred CCcEEEEEc--CCch-HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEe
Q 007327 9 KTTQALFYN--YKQL-PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINF 85 (608)
Q Consensus 9 p~s~avv~g--~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi~ 85 (608)
+.+++|+|+ +.|. ++|.|.++.+ .++++-.. ..+ ..+ ...++... ++|+++.+
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp~-----~~l~~~~s---~~~-------~~~------~~~~~~~~---~~DvvFla 57 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSD-----IELLSIPE---AKR-------KDA------AARRELLN---AADVAILC 57 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCC-----eEEEEEec---CCC-------Ccc------cCchhhhc---CCCEEEEC
Confidence 467899963 3344 8888887753 22332222 111 111 22223222 48999999
Q ss_pred ccChhcHHHHHHHhcCCCCCEEEEecCCC
Q 007327 86 SSFRSAAASSMAALKQPTIRVVAIIAEGV 114 (608)
Q Consensus 86 vp~~~~~~~~le~~~~~gv~~~viis~Gf 114 (608)
+|... ......++.++|++ +|=.|+-|
T Consensus 58 lp~~~-s~~~~~~~~~~g~~-VIDlSadf 84 (313)
T PRK11863 58 LPDDA-AREAVALIDNPATR-VIDASTAH 84 (313)
T ss_pred CCHHH-HHHHHHHHHhCCCE-EEECChhh
Confidence 99875 45566666667775 44356544
No 231
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=59.75 E-value=28 Score=38.21 Aligned_cols=53 Identities=23% Similarity=0.162 Sum_probs=30.3
Q ss_pred CccEEEEeccCh----------hcHHHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCC
Q 007327 78 MADVFINFSSFR----------SAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNN 130 (608)
Q Consensus 78 ~vDlavi~vp~~----------~~~~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g 130 (608)
+.|+++++||.. ..+.++.+.+.+..-+.+||+.|=++....+++.+..++.+
T Consensus 73 ~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l~~~~~~~~ 135 (388)
T PRK15057 73 DADYVIIATPTDYDPKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMHKKYRTEN 135 (388)
T ss_pred CCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHHHHHhhcCc
Confidence 489999999965 23445555555433334566555454444555555544443
No 232
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=59.52 E-value=28 Score=31.59 Aligned_cols=88 Identities=14% Similarity=0.150 Sum_probs=55.5
Q ss_pred cEEEEecChhHHHHHHHHHHh-cCCceeEEeecCCCCCCCCCHHHH-------------HHHhhcCCCccEEEEEEecCC
Q 007327 169 SVGFVSKSGGMSNELYNTIAR-VTDGIYEGIAIGGDVFPGSTLSDH-------------ILRFNNIPQVKMMVVLGELGG 234 (608)
Q Consensus 169 ~valvSQSG~l~~~~~~~~~~-~g~G~s~~vs~Gn~~~~dv~~~d~-------------l~~l~~Dp~T~~I~ly~E~g~ 234 (608)
+|+++.-||-||..+...+.+ .++-+..++...++...+-+..|+ ++-+.++++ ++ ++ +
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~D--Vv---ID--f 74 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEAD--VV---ID--F 74 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-S--EE---EE--E
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCC--EE---EE--c
Confidence 588999999999999998887 789989998888832223333222 222333333 44 33 4
Q ss_pred ccHHHHHHHHHhCC-CCCCEEEEEeCCCcc
Q 007327 235 RDEYSLVEALKQGK-VNKPVVAWVSGTCAR 263 (608)
Q Consensus 235 ~~~~~f~~~~r~a~-~~KPVvvlk~Grs~~ 263 (608)
..+....+.++.+. .++|+|+--.|-++.
T Consensus 75 T~p~~~~~~~~~~~~~g~~~ViGTTG~~~~ 104 (124)
T PF01113_consen 75 TNPDAVYDNLEYALKHGVPLVIGTTGFSDE 104 (124)
T ss_dssp S-HHHHHHHHHHHHHHT-EEEEE-SSSHHH
T ss_pred CChHHhHHHHHHHHhCCCCEEEECCCCCHH
Confidence 46776666666543 689999987776653
No 233
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=58.34 E-value=42 Score=36.34 Aligned_cols=114 Identities=11% Similarity=-0.004 Sum_probs=57.8
Q ss_pred CcEEEEEc--CCch-HHHHHhhC-cccCCCCCCcEEEEeCCCCCCccccccCceeecccccC-CHHHHhhcCCCccEEEE
Q 007327 10 TTQALFYN--YKQL-PIQRMLDF-DFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHS-TVEAACAAHPMADVFIN 84 (608)
Q Consensus 10 ~s~avv~g--~~~~-~~~~l~~~-~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~-sv~~i~~~~p~vDlavi 84 (608)
..++|||+ +.|+ +++.|.++ .|.+ + ++....+ ....|+.-.+.|. .+.+.+ +..+. . ++|+++.
T Consensus 6 ~~VaIvGATG~vG~ell~lL~~h~~f~v--~-~l~~~aS-~~saGk~~~~~~~---~l~v~~~~~~~~-~---~~Divf~ 74 (347)
T PRK06728 6 YHVAVVGATGAVGQKIIELLEKETKFNI--A-EVTLLSS-KRSAGKTVQFKGR---EIIIQEAKINSF-E---GVDIAFF 74 (347)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHCCCCCc--c-cEEEEEC-cccCCCCeeeCCc---ceEEEeCCHHHh-c---CCCEEEE
Confidence 47889952 3344 77777643 3331 1 1222233 3333333333332 133322 22222 2 4899999
Q ss_pred eccChhcHHHHHHHhcCCCCCEEEEecCCCC----------HHHHHHHHHHHHhCCCeEEcCCccc
Q 007327 85 FSSFRSAAASSMAALKQPTIRVVAIIAEGVP----------EADTKQLIAYARSNNKVVIGPATVG 140 (608)
Q Consensus 85 ~vp~~~~~~~~le~~~~~gv~~~viis~Gf~----------e~~~~~l~~~a~~~g~rvlGPNc~G 140 (608)
++|... .......+.++|.+ +|=.|+-|. |-..+++.. ..+ .|-.|||.=
T Consensus 75 a~~~~~-s~~~~~~~~~~G~~-VID~Ss~fR~~~~vplvvPEvN~e~i~~---~~~-iIanPnC~t 134 (347)
T PRK06728 75 SAGGEV-SRQFVNQAVSSGAI-VIDNTSEYRMAHDVPLVVPEVNAHTLKE---HKG-IIAVPNCSA 134 (347)
T ss_pred CCChHH-HHHHHHHHHHCCCE-EEECchhhcCCCCCCeEeCCcCHHHHhc---cCC-EEECCCCHH
Confidence 999875 45566666556642 232455453 323344543 135 599999953
No 234
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=57.50 E-value=53 Score=35.13 Aligned_cols=81 Identities=10% Similarity=0.016 Sum_probs=41.1
Q ss_pred cEEEEEcCCch----HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHH-HhhcCCCccEEEEe
Q 007327 11 TQALFYNYKQL----PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEA-ACAAHPMADVFINF 85 (608)
Q Consensus 11 s~avv~g~~~~----~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~-i~~~~p~vDlavi~ 85 (608)
+++|+ |++|. +++.|.+.+|. -.++++... ....++.-.+.|.+ ++. .++++ ... ++|+++.+
T Consensus 3 ~V~Iv-GAtG~vG~~l~~lL~~~~hp---~~~l~~l~s-~~~~g~~l~~~g~~---i~v-~d~~~~~~~---~vDvVf~A 70 (334)
T PRK14874 3 NVAVV-GATGAVGREMLNILEERNFP---VDKLRLLAS-ARSAGKELSFKGKE---LKV-EDLTTFDFS---GVDIALFS 70 (334)
T ss_pred EEEEE-CCCCHHHHHHHHHHHhCCCC---cceEEEEEc-cccCCCeeeeCCce---eEE-eeCCHHHHc---CCCEEEEC
Confidence 57788 54444 88888886554 223444333 32222111122211 122 12221 112 48999999
Q ss_pred ccChhcHHHHHHHhcCCCC
Q 007327 86 SSFRSAAASSMAALKQPTI 104 (608)
Q Consensus 86 vp~~~~~~~~le~~~~~gv 104 (608)
+|... .....+...++|+
T Consensus 71 ~g~g~-s~~~~~~~~~~G~ 88 (334)
T PRK14874 71 AGGSV-SKKYAPKAAAAGA 88 (334)
T ss_pred CChHH-HHHHHHHHHhCCC
Confidence 98875 4555666655776
No 235
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=57.20 E-value=19 Score=38.14 Aligned_cols=94 Identities=14% Similarity=0.126 Sum_probs=54.5
Q ss_pred CCCcEEEEE-cC-CchHHHHHhhCcccCCCCCCcEEEEeC-CCCCCccccccCceeecccc-cCCHHHHhhc--CCCccE
Q 007327 8 SKTTQALFY-NY-KQLPIQRMLDFDFLCGRETPSVAGIIN-PGAEGFQKLFFGQEEIAIPV-HSTVEAACAA--HPMADV 81 (608)
Q Consensus 8 ~p~s~avv~-g~-~~~~~~~l~~~~~~~~~g~~~v~~v~~-p~~~~~~~~~~g~ev~G~~~-y~sv~~i~~~--~p~vDl 81 (608)
++..++||| |. +..++..+++.. +.++++.+.- |...+. .. .+-.|++. |.+++++.+. .+++|+
T Consensus 3 ~klrVAIIGtG~IGt~hm~~l~~~~-----~velvAVvdid~es~gl---a~-A~~~Gi~~~~~~ie~LL~~~~~~dIDi 73 (302)
T PRK08300 3 SKLKVAIIGSGNIGTDLMIKILRSE-----HLEPGAMVGIDPESDGL---AR-ARRLGVATSAEGIDGLLAMPEFDDIDI 73 (302)
T ss_pred CCCeEEEEcCcHHHHHHHHHHhcCC-----CcEEEEEEeCChhhHHH---HH-HHHcCCCcccCCHHHHHhCcCCCCCCE
Confidence 456789996 22 122566666543 3345554440 221110 00 23468886 6889998763 136999
Q ss_pred EEEeccChhcHHHHHHHhcCCCCCEEEEecC
Q 007327 82 FINFSSFRSAAASSMAALKQPTIRVVAIIAE 112 (608)
Q Consensus 82 avi~vp~~~~~~~~le~~~~~gv~~~viis~ 112 (608)
+++++|+.. .....+.+.++|+ .++..+.
T Consensus 74 Vf~AT~a~~-H~e~a~~a~eaGk-~VID~sP 102 (302)
T PRK08300 74 VFDATSAGA-HVRHAAKLREAGI-RAIDLTP 102 (302)
T ss_pred EEECCCHHH-HHHHHHHHHHcCC-eEEECCc
Confidence 999999975 4455565666775 3555554
No 236
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=56.61 E-value=40 Score=36.25 Aligned_cols=46 Identities=24% Similarity=0.294 Sum_probs=33.8
Q ss_pred cccccCCHHHHhhcCCCccEEEEeccChhcHHHHHHHhcCCCCCEEEEecCC
Q 007327 62 AIPVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEG 113 (608)
Q Consensus 62 G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~~~~le~~~~~gv~~~viis~G 113 (608)
|++++.+..++.. ++|+++.|.|+.. .....+.+.++| +. +|++++
T Consensus 65 ~i~V~~~~~el~~---~vDVVIdaT~~~~-~~e~a~~~~~aG-k~-VI~~~~ 110 (341)
T PRK04207 65 GIPVAGTIEDLLE---KADIVVDATPGGV-GAKNKELYEKAG-VK-AIFQGG 110 (341)
T ss_pred ceEEcCChhHhhc---cCCEEEECCCchh-hHHHHHHHHHCC-CE-EEEcCC
Confidence 6788888888764 4899999999875 556667777788 33 455655
No 237
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=56.56 E-value=37 Score=35.63 Aligned_cols=118 Identities=14% Similarity=0.121 Sum_probs=61.7
Q ss_pred CCCCcEEEEE-cCCch-HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccc--cCCHHHHhhcCCCccEE
Q 007327 7 FSKTTQALFY-NYKQL-PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPV--HSTVEAACAAHPMADVF 82 (608)
Q Consensus 7 ~~p~s~avv~-g~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~--y~sv~~i~~~~p~vDla 82 (608)
++-++++|+| |..|+ +.+.+..+|+. |..++ .... +.... .-.|... |.++.+... +.|++
T Consensus 149 l~gk~v~IiG~G~iG~avA~~L~~~G~~-------V~v~~-R~~~-~~~~~---~~~g~~~~~~~~l~~~l~---~aDiV 213 (287)
T TIGR02853 149 IHGSNVMVLGFGRTGMTIARTFSALGAR-------VFVGA-RSSA-DLARI---TEMGLIPFPLNKLEEKVA---EIDIV 213 (287)
T ss_pred CCCCEEEEEcChHHHHHHHHHHHHCCCE-------EEEEe-CCHH-HHHHH---HHCCCeeecHHHHHHHhc---cCCEE
Confidence 3456777775 23344 77778777642 44444 3221 00000 0013332 334555443 58999
Q ss_pred EEeccChhcHHHHHHHhcCCCCCEEEE-ecCCCCHHHHHHHHHHHHhCCCe-EEcCCcccccccCc
Q 007327 83 INFSSFRSAAASSMAALKQPTIRVVAI-IAEGVPEADTKQLIAYARSNNKV-VIGPATVGGIQAGA 146 (608)
Q Consensus 83 vi~vp~~~~~~~~le~~~~~gv~~~vi-is~Gf~e~~~~~l~~~a~~~g~r-vlGPNc~Gi~~~~~ 146 (608)
+.++|........++.+. . ..++| +++.-.+++ + +.|++.|++ ++-||-.|.+-|..
T Consensus 214 int~P~~ii~~~~l~~~k-~--~aliIDlas~Pg~td---f-~~Ak~~G~~a~~~~glPg~~ap~t 272 (287)
T TIGR02853 214 INTIPALVLTADVLSKLP-K--HAVIIDLASKPGGTD---F-EYAKKRGIKALLAPGLPGIVAPKT 272 (287)
T ss_pred EECCChHHhCHHHHhcCC-C--CeEEEEeCcCCCCCC---H-HHHHHCCCEEEEeCCCCcccCchh
Confidence 999987632233444443 2 23333 333222222 3 688999997 44587777776654
No 238
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=56.10 E-value=23 Score=37.23 Aligned_cols=91 Identities=16% Similarity=0.185 Sum_probs=50.8
Q ss_pred CcEEEEEc-CCch-HHHHHhhCcccCCCCCCcEEEEe-CCCCCCccccccCceeecccc-cCCHHHHhhcCCCccEEEEe
Q 007327 10 TTQALFYN-YKQL-PIQRMLDFDFLCGRETPSVAGII-NPGAEGFQKLFFGQEEIAIPV-HSTVEAACAAHPMADVFINF 85 (608)
Q Consensus 10 ~s~avv~g-~~~~-~~~~l~~~~~~~~~g~~~v~~v~-~p~~~~~~~~~~g~ev~G~~~-y~sv~~i~~~~p~vDlavi~ 85 (608)
..++|||. .-|+ ++.++++.. +.++++.+. .|.+.+. . -.+-.|++. |.+++++... +++|+++++
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~-----~~elvaV~d~d~es~~l--a--~A~~~Gi~~~~~~~e~ll~~-~dIDaV~ia 71 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSE-----HLEMVAMVGIDPESDGL--A--RARELGVKTSAEGVDGLLAN-PDIDIVFDA 71 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCC-----CcEEEEEEeCCcccHHH--H--HHHHCCCCEEECCHHHHhcC-CCCCEEEEC
Confidence 46889962 2122 556666532 334554443 1322110 0 023467775 5688887753 469999999
Q ss_pred ccChhcHHHHHHHhcCCCCCEEEEecC
Q 007327 86 SSFRSAAASSMAALKQPTIRVVAIIAE 112 (608)
Q Consensus 86 vp~~~~~~~~le~~~~~gv~~~viis~ 112 (608)
+|...... ....+.++|.. ++..+.
T Consensus 72 Tp~~~H~e-~a~~al~aGk~-VIdekP 96 (285)
T TIGR03215 72 TSAKAHAR-HARLLAELGKI-VIDLTP 96 (285)
T ss_pred CCcHHHHH-HHHHHHHcCCE-EEECCc
Confidence 99986444 44555557754 555443
No 239
>KOG2774 consensus NAD dependent epimerase [General function prediction only]
Probab=55.69 E-value=2.4e+02 Score=29.15 Aligned_cols=145 Identities=15% Similarity=0.185 Sum_probs=90.2
Q ss_pred ecccccCCHHHHhhcCCCccEEEEeccChhcHHHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCeEEcCCccc
Q 007327 61 IAIPVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVG 140 (608)
Q Consensus 61 ~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~rvlGPNc~G 140 (608)
..+--|++++++.-.+ .+|-.+= ..+.+-+.++.+|+.++-+- .+-..-+++.|+++++++.=|.++|
T Consensus 94 ~DILD~K~L~eIVVn~-RIdWL~H-------fSALLSAvGE~NVpLA~~VN----I~GvHNil~vAa~~kL~iFVPSTIG 161 (366)
T KOG2774|consen 94 LDILDQKSLEEIVVNK-RIDWLVH-------FSALLSAVGETNVPLALQVN----IRGVHNILQVAAKHKLKVFVPSTIG 161 (366)
T ss_pred hhhhccccHHHhhccc-ccceeee-------HHHHHHHhcccCCceeeeec----chhhhHHHHHHHHcCeeEeeccccc
Confidence 4566788888876544 4676542 35678888899999887543 2234568899999999999999999
Q ss_pred ccccCcccccccCCcccccccccC-CCCCcEEEEecChhHHHHHHHHH--HhcCC-----ceeEEeec----CCCCCCCC
Q 007327 141 GIQAGAFKIGDTAGTIDNIIHCKL-YRPGSVGFVSKSGGMSNELYNTI--ARVTD-----GIYEGIAI----GGDVFPGS 208 (608)
Q Consensus 141 i~~~~~~~l~~~~~~~~~~~p~~~-~~~G~valvSQSG~l~~~~~~~~--~~~g~-----G~s~~vs~----Gn~~~~dv 208 (608)
-+-|.+-+ |-+ |.-. -+|-.|==||.-- .+++..- .+-|+ .|-.++|. |+.. |.
T Consensus 162 AFGPtSPR----NPT-----PdltIQRPRTIYGVSKVH---AEL~GEy~~hrFg~dfr~~rfPg~is~~~pgggtt--dy 227 (366)
T KOG2774|consen 162 AFGPTSPR----NPT-----PDLTIQRPRTIYGVSKVH---AELLGEYFNHRFGVDFRSMRFPGIISATKPGGGTT--DY 227 (366)
T ss_pred ccCCCCCC----CCC-----CCeeeecCceeechhHHH---HHHHHHHHHhhcCccceecccCcccccCCCCCCcc--hh
Confidence 88776511 111 1100 1455554455432 2222211 12244 34456666 4444 66
Q ss_pred CHHHHHHHhhc-------CCCccEEEEEEe
Q 007327 209 TLSDHILRFNN-------IPQVKMMVVLGE 231 (608)
Q Consensus 209 ~~~d~l~~l~~-------Dp~T~~I~ly~E 231 (608)
..+-+-+.+.+ -|+|+.=.+|.|
T Consensus 228 a~A~f~~Al~~gk~tCylrpdtrlpmmy~~ 257 (366)
T KOG2774|consen 228 AIAIFYDALQKGKHTCYLRPDTRLPMMYDT 257 (366)
T ss_pred HHHHHHHHHHcCCcccccCCCccCceeehH
Confidence 66666666643 689999999998
No 240
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=55.37 E-value=66 Score=35.27 Aligned_cols=72 Identities=17% Similarity=0.206 Sum_probs=44.2
Q ss_pred cccCCHHHHhhcCCCccEEEEeccC-----hhcH-HHHHHHhcCCCCCEEEEecC----C--CCHHHHHHHHHHHHhCCC
Q 007327 64 PVHSTVEAACAAHPMADVFINFSSF-----RSAA-ASSMAALKQPTIRVVAIIAE----G--VPEADTKQLIAYARSNNK 131 (608)
Q Consensus 64 ~~y~sv~~i~~~~p~vDlavi~vp~-----~~~~-~~~le~~~~~gv~~~viis~----G--f~e~~~~~l~~~a~~~g~ 131 (608)
|.|++....+.- ....++.||- .+.+ .+.+++.....+|.+++.+- | +++...++|.++|+++++
T Consensus 121 P~Y~~y~~~~~~---~gg~~v~v~l~~~~~~f~~d~~~l~~~i~~ktk~i~ln~P~NPTGav~~~~~l~~i~~~a~~~~i 197 (393)
T COG0436 121 PGYPSYEAAVKL---AGGKPVPVPLDEEENGFKPDLEDLEAAITPKTKAIILNSPNNPTGAVYSKEELKAIVELAREHDI 197 (393)
T ss_pred CCCcCHHHHHHh---cCCEEEEEeCCcCccCCcCCHHHHHhhcCccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCe
Confidence 556666655432 2445555652 1111 23445554468998877653 3 455688999999999999
Q ss_pred eEEcCCc
Q 007327 132 VVIGPAT 138 (608)
Q Consensus 132 rvlGPNc 138 (608)
.|+==.+
T Consensus 198 ~ii~DEi 204 (393)
T COG0436 198 IIISDEI 204 (393)
T ss_pred EEEEehh
Confidence 8875444
No 241
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=55.25 E-value=30 Score=37.44 Aligned_cols=121 Identities=15% Similarity=0.092 Sum_probs=75.7
Q ss_pred CCcEEEEE-c-CCchHHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeeccccc--CCHHHHhhcCCCccEEEE
Q 007327 9 KTTQALFY-N-YKQLPIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVH--STVEAACAAHPMADVFIN 84 (608)
Q Consensus 9 p~s~avv~-g-~~~~~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y--~sv~~i~~~~p~vDlavi 84 (608)
+.-++++| + ++.+++-|+.+.||. |-..| - .-....+|...+-.|.|.+ .|++|......++-.+++
T Consensus 6 ~~digLiGLaVMGqnLiLN~~d~Gf~-------v~~yN-R-T~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iil 76 (487)
T KOG2653|consen 6 KADIGLIGLAVMGQNLILNIADKGFT-------VCAYN-R-TTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIIL 76 (487)
T ss_pred ccchhhhhHhhhhhhhhhcccccCce-------EEEec-c-chHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEE
Confidence 34567774 2 555688899999885 44555 2 1112334443344444432 378887654434688888
Q ss_pred eccChhcHHHHHHHhcCCCCCEEEEecCCCCHH--HHHHHHHHHHhCCCeEEcCCcc
Q 007327 85 FSSFRSAAASSMAALKQPTIRVVAIIAEGVPEA--DTKQLIAYARSNNKVVIGPATV 139 (608)
Q Consensus 85 ~vp~~~~~~~~le~~~~~gv~~~viis~Gf~e~--~~~~l~~~a~~~g~rvlGPNc~ 139 (608)
.|-+...|+..++++...==|.=|||-+|=++- ..++-.+ ..+.|+.++|..--
T Consensus 77 lvkAG~pVD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~e-l~k~GilfvG~GVS 132 (487)
T KOG2653|consen 77 LVKAGAPVDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRE-LAKKGILFVGSGVS 132 (487)
T ss_pred EeeCCCcHHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHH-HHhcCcEEEecCcc
Confidence 899888899999988765555667777775543 3344443 34678999987543
No 242
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=54.81 E-value=47 Score=34.80 Aligned_cols=98 Identities=10% Similarity=0.050 Sum_probs=49.6
Q ss_pred cEEEEE-c-CCchHHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecc-ccc-CCH-HHHhhcCCCccEEEEe
Q 007327 11 TQALFY-N-YKQLPIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAI-PVH-STV-EAACAAHPMADVFINF 85 (608)
Q Consensus 11 s~avv~-g-~~~~~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~-~~y-~sv-~~i~~~~p~vDlavi~ 85 (608)
.+.|+| | +++.+.+.+.+.|+. ..|.+.+ ..... ..-..-.|+ -.+ .+. .+... +.|++|++
T Consensus 5 ~v~IvG~GliG~s~a~~l~~~g~~-----v~i~g~d-~~~~~----~~~a~~lgv~d~~~~~~~~~~~~---~aD~Viva 71 (279)
T COG0287 5 KVGIVGLGLMGGSLARALKEAGLV-----VRIIGRD-RSAAT----LKAALELGVIDELTVAGLAEAAA---EADLVIVA 71 (279)
T ss_pred EEEEECCchHHHHHHHHHHHcCCe-----EEEEeec-CcHHH----HHHHhhcCcccccccchhhhhcc---cCCEEEEe
Confidence 455554 3 445588888888764 2355655 32221 000011222 222 222 22111 47999999
Q ss_pred ccChhcHHHHHHHhcC-CCCCEEEEecCCCCHHHHHHH
Q 007327 86 SSFRSAAASSMAALKQ-PTIRVVAIIAEGVPEADTKQL 122 (608)
Q Consensus 86 vp~~~~~~~~le~~~~-~gv~~~viis~Gf~e~~~~~l 122 (608)
||-.. ...++++... .....+|+=.+.+...-.+.+
T Consensus 72 vPi~~-~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~ 108 (279)
T COG0287 72 VPIEA-TEEVLKELAPHLKKGAIVTDVGSVKSSVVEAM 108 (279)
T ss_pred ccHHH-HHHHHHHhcccCCCCCEEEecccccHHHHHHH
Confidence 99985 7888888873 233333333344554333333
No 243
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=54.61 E-value=42 Score=30.09 Aligned_cols=92 Identities=14% Similarity=0.024 Sum_probs=47.5
Q ss_pred EEEEE--cCCch-HHHHHhhCcccCCCCCCcEEEEeCCC-CCCccccccC--ceeeccccc-CCHHHHhhcCCCccEEEE
Q 007327 12 QALFY--NYKQL-PIQRMLDFDFLCGRETPSVAGIINPG-AEGFQKLFFG--QEEIAIPVH-STVEAACAAHPMADVFIN 84 (608)
Q Consensus 12 ~avv~--g~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p~-~~~~~~~~~g--~ev~G~~~y-~sv~~i~~~~p~vDlavi 84 (608)
++||| |+.|+ +++.|.++-+ .+++..+.... .+........ .....+.+= .+..++ . ++|+++.
T Consensus 2 V~IvGAtG~vG~~l~~lL~~hp~-----~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~Dvvf~ 72 (121)
T PF01118_consen 2 VAIVGATGYVGRELLRLLAEHPD-----FELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEEL-S---DVDVVFL 72 (121)
T ss_dssp EEEESTTSHHHHHHHHHHHHTST-----EEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHH-T---TESEEEE
T ss_pred EEEECCCCHHHHHHHHHHhcCCC-----ccEEEeeeeccccCCeeehhccccccccceeEeecchhHh-h---cCCEEEe
Confidence 67884 23344 8888888642 34566555333 2222211111 001111111 133433 2 5899999
Q ss_pred eccChhcHHHHHHHhcCCCCCEEEEecCCC
Q 007327 85 FSSFRSAAASSMAALKQPTIRVVAIIAEGV 114 (608)
Q Consensus 85 ~vp~~~~~~~~le~~~~~gv~~~viis~Gf 114 (608)
|+|... .....+.+.++|+ .+|=.|+-|
T Consensus 73 a~~~~~-~~~~~~~~~~~g~-~ViD~s~~~ 100 (121)
T PF01118_consen 73 ALPHGA-SKELAPKLLKAGI-KVIDLSGDF 100 (121)
T ss_dssp -SCHHH-HHHHHHHHHHTTS-EEEESSSTT
T ss_pred cCchhH-HHHHHHHHhhCCc-EEEeCCHHH
Confidence 999975 5666777777888 344445545
No 244
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=54.46 E-value=26 Score=38.71 Aligned_cols=26 Identities=15% Similarity=0.031 Sum_probs=19.7
Q ss_pred CCCCCcEEEEEcCCch----HHHHHhhCccc
Q 007327 6 LFSKTTQALFYNYKQL----PIQRMLDFDFL 32 (608)
Q Consensus 6 l~~p~s~avv~g~~~~----~~~~l~~~~~~ 32 (608)
-.+|.+|.|+ |++|+ +++.|++.||.
T Consensus 76 ~~~~~~VlVv-GatG~vG~~iv~~llkrgf~ 105 (411)
T KOG1203|consen 76 SKKPTTVLVV-GATGKVGRRIVKILLKRGFS 105 (411)
T ss_pred CCCCCeEEEe-cCCCchhHHHHHHHHHCCCe
Confidence 4567788888 55555 99999999875
No 245
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=54.32 E-value=19 Score=40.31 Aligned_cols=95 Identities=15% Similarity=0.098 Sum_probs=57.3
Q ss_pred CCCCCcEEEEE-cCCch-HHHHHhhCcccCCCCCCcEEEEeCCC-----CCCccccccCceeecccccCCHHHHhhcCCC
Q 007327 6 LFSKTTQALFY-NYKQL-PIQRMLDFDFLCGRETPSVAGIINPG-----AEGFQKLFFGQEEIAIPVHSTVEAACAAHPM 78 (608)
Q Consensus 6 l~~p~s~avv~-g~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p~-----~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~ 78 (608)
.+.-++|+||| |..|+ ...||.+.|. +++.|.- ++ ..++.+ .+-.|.+. .+++|+.+ +
T Consensus 33 ~LkgKtIaIIGyGSqG~AqAlNLrdSGv------nVvvglr-~~~id~~~~s~~k----A~~dGF~v-~~~~Ea~~---~ 97 (487)
T PRK05225 33 YLKGKKIVIVGCGAQGLNQGLNMRDSGL------DISYALR-KEAIAEKRASWRK----ATENGFKV-GTYEELIP---Q 97 (487)
T ss_pred HhCCCEEEEEccCHHHHHHhCCCccccc------eeEEecc-ccccccccchHHH----HHhcCCcc-CCHHHHHH---h
Confidence 35567899995 44454 5567777753 4555554 32 111100 01146655 57888766 5
Q ss_pred ccEEEEeccChhcHHHHHHHhc-CCCCCEEEEecCCCCH
Q 007327 79 ADVFINFSSFRSAAASSMAALK-QPTIRVVAIIAEGVPE 116 (608)
Q Consensus 79 vDlavi~vp~~~~~~~~le~~~-~~gv~~~viis~Gf~e 116 (608)
.|++++.+|... -..+-++.. ...-..++.+|-||..
T Consensus 98 ADvVviLlPDt~-q~~v~~~i~p~LK~Ga~L~fsHGFni 135 (487)
T PRK05225 98 ADLVINLTPDKQ-HSDVVRAVQPLMKQGAALGYSHGFNI 135 (487)
T ss_pred CCEEEEcCChHH-HHHHHHHHHhhCCCCCEEEecCCcee
Confidence 799999999874 444444333 2345678889999974
No 246
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=53.87 E-value=24 Score=30.87 Aligned_cols=50 Identities=12% Similarity=0.159 Sum_probs=30.8
Q ss_pred cEEEEeccChhcHHHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCeEEc
Q 007327 80 DVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIG 135 (608)
Q Consensus 80 Dlavi~vp~~~~~~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~rvlG 135 (608)
+-.|| +|... .+++..+..++++.+| +|+|... .++++++|++.++.|+-
T Consensus 41 ~~lvI-t~gdR--~di~~~a~~~~i~~iI-ltg~~~~--~~~v~~la~~~~i~vi~ 90 (105)
T PF07085_consen 41 GDLVI-TPGDR--EDIQLAAIEAGIACII-LTGGLEP--SEEVLELAKELGIPVIS 90 (105)
T ss_dssp TEEEE-EETT---HHHHHHHCCTTECEEE-EETT------HHHHHHHHHHT-EEEE
T ss_pred CeEEE-EeCCc--HHHHHHHHHhCCCEEE-EeCCCCC--CHHHHHHHHHCCCEEEE
Confidence 44454 55654 4666666668887555 5777654 67888999999987664
No 247
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=53.62 E-value=30 Score=36.00 Aligned_cols=40 Identities=10% Similarity=0.015 Sum_probs=23.2
Q ss_pred CccEEEEeccChh-cHHHHHHHhcCC-CCCEEEE-ecCCCCHH
Q 007327 78 MADVFINFSSFRS-AAASSMAALKQP-TIRVVAI-IAEGVPEA 117 (608)
Q Consensus 78 ~vDlavi~vp~~~-~~~~~le~~~~~-gv~~~vi-is~Gf~e~ 117 (608)
+.|+++.+||... ....+++++.+. .-..+++ .|++++.+
T Consensus 83 ~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~ 125 (295)
T PLN02545 83 DADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISIT 125 (295)
T ss_pred CCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH
Confidence 4899999999322 234555555432 1123443 57888754
No 248
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=53.55 E-value=51 Score=36.93 Aligned_cols=84 Identities=18% Similarity=0.064 Sum_probs=56.7
Q ss_pred ecccccCCHHHHhhcCCCccEEEEeccChhc-HHHHHHHhcCCCCCEEEEecCCC-------CHHHHHHHHHHHHhCCCe
Q 007327 61 IAIPVHSTVEAACAAHPMADVFINFSSFRSA-AASSMAALKQPTIRVVAIIAEGV-------PEADTKQLIAYARSNNKV 132 (608)
Q Consensus 61 ~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~-~~~~le~~~~~gv~~~viis~Gf-------~e~~~~~l~~~a~~~g~r 132 (608)
.--|+|+..-.+....+ +.+.-|.+-.... +++..+.|.+.++|.+.++.+.= ++...++|+++|+++++.
T Consensus 184 vE~PtY~~~~~~~~~~g-~~~~~vp~d~~G~~~e~le~~~~~~~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~ 262 (459)
T COG1167 184 VEDPTYPGALQALEALG-ARVIPVPVDEDGIDPEALEEALAQWKPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVL 262 (459)
T ss_pred EcCCCcHHHHHHHHHcC-CcEEecCCCCCCCCHHHHHHHHhhcCCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCe
Confidence 33578888888776653 6666555543333 34455556656799998887632 344678999999999999
Q ss_pred EEcCCcccccccC
Q 007327 133 VIGPATVGGIQAG 145 (608)
Q Consensus 133 vlGPNc~Gi~~~~ 145 (608)
||==+..|-+...
T Consensus 263 IIEDD~y~el~~~ 275 (459)
T COG1167 263 IIEDDYYGELRYD 275 (459)
T ss_pred EEeeCcchhhhcC
Confidence 9877766655443
No 249
>CHL00194 ycf39 Ycf39; Provisional
Probab=53.06 E-value=1.1e+02 Score=32.02 Aligned_cols=92 Identities=15% Similarity=0.138 Sum_probs=47.8
Q ss_pred CcEEEEEcCCch----HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCcee-e-cccccCCHHHHhhcCCCccEEE
Q 007327 10 TTQALFYNYKQL----PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEE-I-AIPVHSTVEAACAAHPMADVFI 83 (608)
Q Consensus 10 ~s~avv~g~~~~----~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev-~-G~~~y~sv~~i~~~~p~vDlav 83 (608)
|++.|.| ++|. +++.|++.||. ++..+-.+.+..... -.|-++ . .+.-..++.++.. ++|.++
T Consensus 1 MkIlVtG-atG~iG~~lv~~Ll~~g~~------V~~l~R~~~~~~~l~-~~~v~~v~~Dl~d~~~l~~al~---g~d~Vi 69 (317)
T CHL00194 1 MSLLVIG-ATGTLGRQIVRQALDEGYQ------VRCLVRNLRKASFLK-EWGAELVYGDLSLPETLPPSFK---GVTAII 69 (317)
T ss_pred CEEEEEC-CCcHHHHHHHHHHHHCCCe------EEEEEcChHHhhhHh-hcCCEEEECCCCCHHHHHHHHC---CCCEEE
Confidence 3566774 4433 88888888764 333332121110000 011111 1 1222334555444 479877
Q ss_pred EeccChh------------cHHHHHHHhcCCCCCEEEEecC
Q 007327 84 NFSSFRS------------AAASSMAALKQPTIRVVAIIAE 112 (608)
Q Consensus 84 i~vp~~~------------~~~~~le~~~~~gv~~~viis~ 112 (608)
-+++... ....++++|.+.|++.+|.+|+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss 110 (317)
T CHL00194 70 DASTSRPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSI 110 (317)
T ss_pred ECCCCCCCCccchhhhhHHHHHHHHHHHHHcCCCEEEEecc
Confidence 6554211 1246789999999999888776
No 250
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=52.43 E-value=53 Score=35.05 Aligned_cols=110 Identities=14% Similarity=0.088 Sum_probs=59.3
Q ss_pred CCCCcEEEEE-cCCch-HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEE
Q 007327 7 FSKTTQALFY-NYKQL-PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFIN 84 (608)
Q Consensus 7 ~~p~s~avv~-g~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi 84 (608)
+.=+++.||| |.-|+ +.+.+. .+| |.+++ +.+ |...... .+-.|.+ |.+++|+.. +.|.+++
T Consensus 143 L~gktvGIiG~G~IG~~va~~l~-~~f----gm~V~-~~~-~~~~~~~-----~~~~~~~-~~~l~ell~---~sDvv~l 206 (323)
T PRK15409 143 VHHKTLGIVGMGRIGMALAQRAH-FGF----NMPIL-YNA-RRHHKEA-----EERFNAR-YCDLDTLLQ---ESDFVCI 206 (323)
T ss_pred CCCCEEEEEcccHHHHHHHHHHH-hcC----CCEEE-EEC-CCCchhh-----HHhcCcE-ecCHHHHHH---hCCEEEE
Confidence 4456888885 43355 555554 334 33333 444 4211000 0123443 669999887 4799999
Q ss_pred eccChhcHHHHH--HHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCe
Q 007327 85 FSSFRSAAASSM--AALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKV 132 (608)
Q Consensus 85 ~vp~~~~~~~~l--e~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~r 132 (608)
.+|-......++ +.....+-.+++|-++-=+--+++.|.+..++..+.
T Consensus 207 h~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~ 256 (323)
T PRK15409 207 ILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIH 256 (323)
T ss_pred eCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCee
Confidence 999754332222 223333334455545433334888898888876554
No 251
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=52.23 E-value=64 Score=36.22 Aligned_cols=84 Identities=12% Similarity=0.035 Sum_probs=43.4
Q ss_pred CcEEEEEcCCch---HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhh---cCCCccEEE
Q 007327 10 TTQALFYNYKQL---PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACA---AHPMADVFI 83 (608)
Q Consensus 10 ~s~avv~g~~~~---~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~---~~p~vDlav 83 (608)
+.+.|+ |++.. +.+.+.+.... |...|+-++..+.. | .++|++.+++|+.+ .. ++|-++
T Consensus 144 rrVLIv-GaG~~g~~l~~~L~~~~~~---g~~vVGfiDdd~~~-------g---~~VpvlG~~~dL~~~v~~~-~IdeVi 208 (463)
T PRK10124 144 RMVAVA-GDLPAGQMLLESFRNEPWL---GFEVVGVYHDPKPG-------G---VSNDWAGNLQQLVEDAKAG-KIHNVY 208 (463)
T ss_pred CcEEEE-ECCHHHHHHHHHHhcCccC---CeEEEEEEeCCccc-------c---CCCCcCCCHHHHHHHHHhC-CCCEEE
Confidence 456666 54433 66677654321 33456655411110 1 22355777666432 33 478888
Q ss_pred EeccChh--cHHHHHHHhcCCCCCEEE
Q 007327 84 NFSSFRS--AAASSMAALKQPTIRVVA 108 (608)
Q Consensus 84 i~vp~~~--~~~~~le~~~~~gv~~~v 108 (608)
|++|... ....+++.|.+.+++.-+
T Consensus 209 IAip~~~~~~l~ell~~~~~~~v~V~i 235 (463)
T PRK10124 209 IAMSMCDGARVKKLVRQLADTTCSVLL 235 (463)
T ss_pred EeCCCcchHHHHHHHHHHHHcCCeEEE
Confidence 8777542 234566667666665433
No 252
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=52.03 E-value=23 Score=29.92 Aligned_cols=76 Identities=13% Similarity=0.089 Sum_probs=43.0
Q ss_pred cEEEEEcCC---chHHHHHhhCcccCCCCCCcEEEE-eCCCCCCccccccCceeecccccC-CHHHHhhcCCCccEEEEe
Q 007327 11 TQALFYNYK---QLPIQRMLDFDFLCGRETPSVAGI-INPGAEGFQKLFFGQEEIAIPVHS-TVEAACAAHPMADVFINF 85 (608)
Q Consensus 11 s~avv~g~~---~~~~~~l~~~~~~~~~g~~~v~~v-~~p~~~~~~~~~~g~ev~G~~~y~-sv~~i~~~~p~vDlavi~ 85 (608)
+++++ |.+ ..+++.+++.|+. ...|.-+ + +.... ...+ .+-.+..++. +..|+.+ +.|+++++
T Consensus 1 kI~iI-G~G~mg~al~~~l~~~g~~----~~~v~~~~~-r~~~~-~~~~--~~~~~~~~~~~~~~~~~~---~advvila 68 (96)
T PF03807_consen 1 KIGII-GAGNMGSALARGLLASGIK----PHEVIIVSS-RSPEK-AAEL--AKEYGVQATADDNEEAAQ---EADVVILA 68 (96)
T ss_dssp EEEEE-STSHHHHHHHHHHHHTTS-----GGEEEEEEE-SSHHH-HHHH--HHHCTTEEESEEHHHHHH---HTSEEEE-
T ss_pred CEEEE-CCCHHHHHHHHHHHHCCCC----ceeEEeecc-CcHHH-HHHH--HHhhccccccCChHHhhc---cCCEEEEE
Confidence 36777 433 2388888888741 1234433 3 32210 0000 1234455565 7777766 36999999
Q ss_pred ccChhcHHHHHHHh
Q 007327 86 SSFRSAAASSMAAL 99 (608)
Q Consensus 86 vp~~~~~~~~le~~ 99 (608)
||+.. .+++++++
T Consensus 69 v~p~~-~~~v~~~i 81 (96)
T PF03807_consen 69 VKPQQ-LPEVLSEI 81 (96)
T ss_dssp S-GGG-HHHHHHHH
T ss_pred ECHHH-HHHHHHHH
Confidence 99985 78888887
No 253
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=51.88 E-value=83 Score=33.84 Aligned_cols=109 Identities=16% Similarity=0.061 Sum_probs=60.4
Q ss_pred CCch-HHHHHhhCcccCCCCCCcEEEEeCCCCCC----ccccccCceeecccccCCHHHHhhcCCCccEEEEeccChhcH
Q 007327 18 YKQL-PIQRMLDFDFLCGRETPSVAGIINPGAEG----FQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRSAA 92 (608)
Q Consensus 18 ~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p~~~~----~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~ 92 (608)
++|+ ..++|++.||. |...| +.+.. ....+ +-.|.+...|..|+.. +.|++++++|....+
T Consensus 30 ~gGspMArnLlkAGhe-------V~V~D-rnrsa~e~e~~e~L---aeaGA~~AaS~aEAAa---~ADVVIL~LPd~aaV 95 (341)
T TIGR01724 30 YGGSRMAIEFAMAGHD-------VVLAE-PNREFMSDDLWKKV---EDAGVKVVSDDKEAAK---HGEIHVLFTPFGKGT 95 (341)
T ss_pred CCHHHHHHHHHHCCCE-------EEEEe-CChhhhhhhhhHHH---HHCCCeecCCHHHHHh---CCCEEEEecCCHHHH
Confidence 4455 78899998875 44554 32210 00001 1247788889998765 479999999998767
Q ss_pred HHHHHHhcC-CCCCEEEEecCCCCHHHHHHHHH-HHHhCCCeEEcCCcccccccCc
Q 007327 93 ASSMAALKQ-PTIRVVAIIAEGVPEADTKQLIA-YARSNNKVVIGPATVGGIQAGA 146 (608)
Q Consensus 93 ~~~le~~~~-~gv~~~viis~Gf~e~~~~~l~~-~a~~~g~rvlGPNc~Gi~~~~~ 146 (608)
.++++.+.. ..-..+||-++=.+.....++.+ ..| +|+.-+||.+.+.
T Consensus 96 ~eVl~GLaa~L~~GaIVID~STIsP~t~~~~~e~~l~------~~r~d~~v~s~HP 145 (341)
T TIGR01724 96 FSIARTIIEHVPENAVICNTCTVSPVVLYYSLEKILR------LKRTDVGISSMHP 145 (341)
T ss_pred HHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHhh------cCccccCeeccCC
Confidence 777654332 22334555555444432222221 111 2455566665554
No 254
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=51.29 E-value=44 Score=37.09 Aligned_cols=26 Identities=15% Similarity=0.172 Sum_probs=16.2
Q ss_pred CCCCcEEEEE-cCCchHHHHHhhCccc
Q 007327 7 FSKTTQALFY-NYKQLPIQRMLDFDFL 32 (608)
Q Consensus 7 ~~p~s~avv~-g~~~~~~~~l~~~~~~ 32 (608)
+.|++|++|| |+-|..+-..+..+|.
T Consensus 4 ~~~mkI~vIGlGyvGlpmA~~la~~~~ 30 (425)
T PRK15182 4 IDEVKIAIIGLGYVGLPLAVEFGKSRQ 30 (425)
T ss_pred CCCCeEEEECcCcchHHHHHHHhcCCE
Confidence 5789999996 5666633333433554
No 255
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=51.20 E-value=66 Score=34.58 Aligned_cols=26 Identities=4% Similarity=-0.184 Sum_probs=18.9
Q ss_pred CccEEEEeccChhcHHHHHHHhcCCCC
Q 007327 78 MADVFINFSSFRSAAASSMAALKQPTI 104 (608)
Q Consensus 78 ~vDlavi~vp~~~~~~~~le~~~~~gv 104 (608)
++|+++.++|... .....+...++|+
T Consensus 61 ~~D~v~~a~g~~~-s~~~a~~~~~~G~ 86 (339)
T TIGR01296 61 GIDIALFSAGGSV-SKEFAPKAAKCGA 86 (339)
T ss_pred CCCEEEECCCHHH-HHHHHHHHHHCCC
Confidence 4899999999875 4455555555777
No 256
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=50.80 E-value=1.9e+02 Score=31.41 Aligned_cols=172 Identities=9% Similarity=0.077 Sum_probs=97.9
Q ss_pred cHHHHHHH-hcCCCCCEEEEecCCCCHH---HHHHHHHHH-HhCCCeEEcCCccccccc-Cccccc-ccCCcccccccc-
Q 007327 91 AAASSMAA-LKQPTIRVVAIIAEGVPEA---DTKQLIAYA-RSNNKVVIGPATVGGIQA-GAFKIG-DTAGTIDNIIHC- 162 (608)
Q Consensus 91 ~~~~~le~-~~~~gv~~~viis~Gf~e~---~~~~l~~~a-~~~g~rvlGPNc~Gi~~~-~~~~l~-~~~~~~~~~~p~- 162 (608)
.+...+++ +.+...+.++|+|+..+|. |.+.+.+.+ ++.+++|+--+|-|+... ...+.. .+.+-+....+.
T Consensus 74 ~L~~~i~~~~~~~~P~~i~v~~tC~~~~iGdDi~~v~~~~~~~~~~~vi~v~t~gf~g~~~~~G~~~a~~al~~~l~~~~ 153 (406)
T cd01967 74 KLKKAIKEAYERFPPKAIFVYSTCPTGLIGDDIEAVAKEASKELGIPVIPVNCEGFRGVSQSLGHHIANDAILDHLVGTK 153 (406)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCchhhhccCHHHHHHHHHHhhCCCEEEEeCCCeeCCcccHHHHHHHHHHHHHhcCCC
Confidence 34444444 4445788899999999997 555554444 357899999999999762 211110 000001111111
Q ss_pred --cCCCCCcEEEEecCh--hHHHHHHHHHHhcCCceeEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEE-EEecCCccH
Q 007327 163 --KLYRPGSVGFVSKSG--GMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVV-LGELGGRDE 237 (608)
Q Consensus 163 --~~~~~G~valvSQSG--~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~T~~I~l-y~E~g~~~~ 237 (608)
....++.|-|+.-.- +=..++...+.+.|+....+++-|.. +.| +.+-++.+.-++ +-+ .+
T Consensus 154 ~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gi~~~~~~~~~~~------~~~----i~~~~~A~~niv~~~~----~~ 219 (406)
T cd01967 154 EPEEKTPYDVNIIGEYNIGGDAWVIKPLLEELGIRVNATFTGDGT------VDE----LRRAHRAKLNLVHCSR----SM 219 (406)
T ss_pred CcCCCCCCeEEEEeccccchhHHHHHHHHHHcCCEEEEEeCCCCC------HHH----HhhCccCCEEEEEChH----HH
Confidence 123577899987642 22366777788778877766653333 344 445677665544 322 34
Q ss_pred HHHHHHHHhCCCCCCEEEEEeCCCccCcccccccCCCCCcCCCCcchHHHHHHHHHHcCC
Q 007327 238 YSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGA 297 (608)
Q Consensus 238 ~~f~~~~r~a~~~KPVvvlk~Grs~~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaGv 297 (608)
..+++.+++ +.+.|.+.. ..-| + +++++.+..+.+..|.
T Consensus 220 ~~~a~~L~~-r~GiP~~~~----~p~G------------~----~~t~~~l~~l~~~lg~ 258 (406)
T cd01967 220 NYLAREMEE-RYGIPYMEV----NFYG------------F----EDTSESLRKIAKFFGD 258 (406)
T ss_pred HHHHHHHHH-hhCCCEEEe----cCCc------------H----HHHHHHHHHHHHHhCC
Confidence 556666654 368898642 1222 1 1234777777777775
No 257
>PLN02928 oxidoreductase family protein
Probab=50.62 E-value=62 Score=34.90 Aligned_cols=114 Identities=10% Similarity=-0.040 Sum_probs=59.2
Q ss_pred CCCCcEEEEE-cCCch-HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccC------cee--ecccccCCHHHHhhcC
Q 007327 7 FSKTTQALFY-NYKQL-PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFG------QEE--IAIPVHSTVEAACAAH 76 (608)
Q Consensus 7 ~~p~s~avv~-g~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g------~ev--~G~~~y~sv~~i~~~~ 76 (608)
++=+++.||| |.-|+ +.+.+..+|+. |.+++ |..........+ .++ .+. -+.+++++..
T Consensus 157 l~gktvGIiG~G~IG~~vA~~l~afG~~-------V~~~d-r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~ell~-- 225 (347)
T PLN02928 157 LFGKTVFILGYGAIGIELAKRLRPFGVK-------LLATR-RSWTSEPEDGLLIPNGDVDDLVDEKG-GHEDIYEFAG-- 225 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHhhCCCE-------EEEEC-CCCChhhhhhhccccccccccccccC-cccCHHHHHh--
Confidence 4446778884 33354 77778777643 55666 421100000000 000 011 4678999876
Q ss_pred CCccEEEEeccChhcHHHHH--HHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCe
Q 007327 77 PMADVFINFSSFRSAAASSM--AALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKV 132 (608)
Q Consensus 77 p~vDlavi~vp~~~~~~~~l--e~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~r 132 (608)
+.|++++++|.......++ +.....+-.+++|-++-=+--+++.|.+..++..+.
T Consensus 226 -~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~ 282 (347)
T PLN02928 226 -EADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLG 282 (347)
T ss_pred -hCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCee
Confidence 4799999999643332222 222222223444444322223788888888776554
No 258
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=50.60 E-value=45 Score=36.82 Aligned_cols=53 Identities=13% Similarity=0.159 Sum_probs=32.7
Q ss_pred CccEEEEeccCh---------hcHHHHHHHhcC-CCCCEEEEecCCCCHHHHHHHHHHHHhCC
Q 007327 78 MADVFINFSSFR---------SAAASSMAALKQ-PTIRVVAIIAEGVPEADTKQLIAYARSNN 130 (608)
Q Consensus 78 ~vDlavi~vp~~---------~~~~~~le~~~~-~gv~~~viis~Gf~e~~~~~l~~~a~~~g 130 (608)
+.|++++|||.. ..+..+.+.+.+ ..-..+||+.|-++....+++....++.+
T Consensus 75 ~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~ 137 (415)
T PRK11064 75 PADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEAR 137 (415)
T ss_pred cCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhc
Confidence 379999999985 235555565553 12245677777666555556665555543
No 259
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=50.35 E-value=2e+02 Score=27.88 Aligned_cols=172 Identities=7% Similarity=-0.062 Sum_probs=81.7
Q ss_pred cccCCHHHHhhcCCCccEEEEeccChh-cHHHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCeEEcCCccc--
Q 007327 64 PVHSTVEAACAAHPMADVFINFSSFRS-AAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVG-- 140 (608)
Q Consensus 64 ~~y~sv~~i~~~~p~vDlavi~vp~~~-~~~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~rvlGPNc~G-- 140 (608)
..+..+.+..... .+++.+..-.... .....++.+...++.++++... .+. ... .+.+++.|+.++..++.-
T Consensus 16 ~~~~g~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iii~~~-~~~-~~~--~~~~~~~~ipvv~~~~~~~~ 90 (264)
T cd06267 16 ELLRGIEEAAREA-GYSVLLCNSDEDPEKEREALELLLSRRVDGIILAPS-RLD-DEL--LEELAALGIPVVLVDRPLDG 90 (264)
T ss_pred HHHHHHHHHHHHc-CCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEecC-Ccc-hHH--HHHHHHcCCCEEEecccccC
Confidence 3444455544433 2566543222110 0134555556567776666432 222 122 555677787777766531
Q ss_pred ----ccccCcccccccCCcccccccccCCCCCcEEEEecChh--HH----HHHHHHHHhcCCce--eEEeecCCCCCCCC
Q 007327 141 ----GIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGG--MS----NELYNTIARVTDGI--YEGIAIGGDVFPGS 208 (608)
Q Consensus 141 ----i~~~~~~~l~~~~~~~~~~~p~~~~~~G~valvSQSG~--l~----~~~~~~~~~~g~G~--s~~vs~Gn~~~~dv 208 (608)
.+..+....+.+.+. .+- ....++|++++.+.. .. ..+.+.+.+.++-+ ...+...... +.
T Consensus 91 ~~~~~v~~d~~~~g~~~~~---~l~--~~g~~~i~~i~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~ 163 (264)
T cd06267 91 LGVDSVGIDNRAGAYLAVE---HLI--ELGHRRIAFIGGPPDLSTARERLEGYREALEEAGIPLDEELIVEGDFSE--ES 163 (264)
T ss_pred CCCCEEeeccHHHHHHHHH---HHH--HCCCceEEEecCCCccchHHHHHHHHHHHHHHcCCCCCcceEEecccch--hh
Confidence 111111000000000 000 113568999876644 21 22344555555422 2333333333 44
Q ss_pred CHHHHHHHhhcCCCccEEEEEEecCCccHHHHHHHHHhCCCC
Q 007327 209 TLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVN 250 (608)
Q Consensus 209 ~~~d~l~~l~~Dp~T~~I~ly~E~g~~~~~~f~~~~r~a~~~ 250 (608)
....+.+++...|+.++|+.. +-.....+++++++....
T Consensus 164 ~~~~~~~~l~~~~~~~~i~~~---~~~~a~~~~~al~~~g~~ 202 (264)
T cd06267 164 GYEAARELLASGERPTAIFAA---NDLMAIGALRALRELGLR 202 (264)
T ss_pred HHHHHHHHHhcCCCCcEEEEc---CcHHHHHHHHHHHHhCCC
Confidence 455666788888888877765 333445677777775443
No 260
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=50.30 E-value=34 Score=31.69 Aligned_cols=48 Identities=10% Similarity=0.133 Sum_probs=36.3
Q ss_pred HHHHHHHhcCCCCCEEEEecCCCC----HH---HHHHHHHHHHhCC-CeEEcCCcc
Q 007327 92 AASSMAALKQPTIRVVAIIAEGVP----EA---DTKQLIAYARSNN-KVVIGPATV 139 (608)
Q Consensus 92 ~~~~le~~~~~gv~~~viis~Gf~----e~---~~~~l~~~a~~~g-~rvlGPNc~ 139 (608)
+.++++.+.+.|++.++++.=||. |+ ...+.++.++++| ..+.=..|+
T Consensus 79 ~~~~l~~l~~~G~~~i~v~p~gF~~D~~Etl~di~~e~~~~~~~~G~~~~~rvp~l 134 (135)
T cd00419 79 TDDALEELAKEGVKNVVVVPIGFVSDHLETLYELDIEYRELAEEAGGENYRRVPCL 134 (135)
T ss_pred HHHHHHHHHHcCCCeEEEECCccccccHHHHHHHHHHHHHHHHHcCCceEEEcCCC
Confidence 678888888899999999999985 33 4567788899887 555544443
No 261
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=50.26 E-value=81 Score=34.69 Aligned_cols=68 Identities=16% Similarity=0.045 Sum_probs=47.8
Q ss_pred cccccCCHHHHhhcCCCccEEEEeccChhcHHHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCe-EEcC
Q 007327 62 AIPVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKV-VIGP 136 (608)
Q Consensus 62 G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~r-vlGP 136 (608)
.+--.+.+.+++. +.|++|.+.|+.. -..++++|.+.||..+-+ |- ..+. ..++.+.|++.|+. |+|-
T Consensus 55 D~~d~~al~~li~---~~d~VIn~~p~~~-~~~i~ka~i~~gv~yvDt-s~-~~~~-~~~~~~~a~~Agit~v~~~ 123 (389)
T COG1748 55 DAADVDALVALIK---DFDLVINAAPPFV-DLTILKACIKTGVDYVDT-SY-YEEP-PWKLDEEAKKAGITAVLGC 123 (389)
T ss_pred cccChHHHHHHHh---cCCEEEEeCCchh-hHHHHHHHHHhCCCEEEc-cc-CCch-hhhhhHHHHHcCeEEEccc
Confidence 3344555666665 3599999999976 568999999999986543 32 2222 38889999999986 4443
No 262
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=49.56 E-value=59 Score=34.62 Aligned_cols=79 Identities=11% Similarity=-0.048 Sum_probs=44.6
Q ss_pred CcEEEEE--cCCch-HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEec
Q 007327 10 TTQALFY--NYKQL-PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFS 86 (608)
Q Consensus 10 ~s~avv~--g~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi~v 86 (608)
.+++|+| |++|. ++|.|..+.+ .+++.... +. . ...+ +.+++.. ++|+++.++
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~-----~el~~l~s---~~---------~---~~~~-~~~~~~~---~~D~vFlal 57 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDD-----IELLSIAP---DR---------R---KDAA-ERAKLLN---AADVAILCL 57 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCC-----eEEEEEec---cc---------c---cCcC-CHhHhhc---CCCEEEECC
Confidence 3688886 34444 8888888753 23333222 11 0 0011 3344333 489999999
Q ss_pred cChhcHHHHHHHhcCCCCCEEEEecCCC
Q 007327 87 SFRSAAASSMAALKQPTIRVVAIIAEGV 114 (608)
Q Consensus 87 p~~~~~~~~le~~~~~gv~~~viis~Gf 114 (608)
|... .....+.+.++|++ +|=.|+-|
T Consensus 58 p~~~-s~~~~~~~~~~g~~-VIDlSadf 83 (310)
T TIGR01851 58 PDDA-AREAVSLVDNPNTC-IIDASTAY 83 (310)
T ss_pred CHHH-HHHHHHHHHhCCCE-EEECChHH
Confidence 9975 55666666556765 44456534
No 263
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor. Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes
Probab=49.17 E-value=2e+02 Score=32.04 Aligned_cols=133 Identities=14% Similarity=0.091 Sum_probs=77.6
Q ss_pred CCCHHHHHHHHHHHHhCCCeEEcCCccc--ccccCcccccccCCcccccccc------------cCCCCCcEEEEecChh
Q 007327 113 GVPEADTKQLIAYARSNNKVVIGPATVG--GIQAGAFKIGDTAGTIDNIIHC------------KLYRPGSVGFVSKSGG 178 (608)
Q Consensus 113 Gf~e~~~~~l~~~a~~~g~rvlGPNc~G--i~~~~~~~l~~~~~~~~~~~p~------------~~~~~G~valvSQSG~ 178 (608)
+........+..++...++..|.|.+-. +-+... . -.|....|. ..+.--.|++|.....
T Consensus 112 ~~~S~~s~ava~~~~~~~IP~Is~~sts~~Ls~~~~--~----~~ffRt~psd~~qa~ai~~ll~~~~W~~Vaii~~~~~ 185 (458)
T cd06375 112 GSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSR--Y----DYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASEGD 185 (458)
T ss_pred CCCchHHHHHHHHhhhccccceeeccCChhhccccc--C----CCeEEecCCcHHHHHHHHHHHHHCCCeEEEEEEeCch
Confidence 3333344556678888999998875432 211111 0 111111111 1234567999988776
Q ss_pred HHHHHH----HHHHhcCCceeEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCccHHHHHHHHHhCCCCCCEE
Q 007327 179 MSNELY----NTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVV 254 (608)
Q Consensus 179 l~~~~~----~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~T~~I~ly~E~g~~~~~~f~~~~r~a~~~KPVv 254 (608)
.+...+ ..+.+.|+-+.....+-... .+.++...+.-+..+++.++|+++.. ..+...|++.+++....++.|
T Consensus 186 yG~~~~~~~~~~~~~~gi~i~~~~~i~~~~-~~~d~~~~l~~l~~~~~a~vVvl~~~--~~~~~~ll~~a~~~g~~~~wi 262 (458)
T cd06375 186 YGETGIEAFEQEARLRNICIATSEKVGRSA-DRKSYDSVIRKLLQKPNARVVVLFTR--SEDARELLAAAKRLNASFTWV 262 (458)
T ss_pred HHHHHHHHHHHHHHHCCeeEEEEEEecCCC-CHHHHHHHHHHHhccCCCEEEEEecC--hHHHHHHHHHHHHcCCcEEEE
Confidence 655444 44555676665555553321 13566667777776788999999976 466788988888865443333
No 264
>PRK06932 glycerate dehydrogenase; Provisional
Probab=48.90 E-value=60 Score=34.49 Aligned_cols=101 Identities=13% Similarity=0.025 Sum_probs=57.5
Q ss_pred CCCcEEEEE-cCCch-HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEe
Q 007327 8 SKTTQALFY-NYKQL-PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINF 85 (608)
Q Consensus 8 ~p~s~avv~-g~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi~ 85 (608)
+=+++.||| |.-|+ +.+.+..+| .+ |.+++ +... .+. .. .|.+++|+.+ +.|.++++
T Consensus 146 ~gktvgIiG~G~IG~~va~~l~~fg------~~-V~~~~-~~~~--------~~~-~~-~~~~l~ell~---~sDiv~l~ 204 (314)
T PRK06932 146 RGSTLGVFGKGCLGTEVGRLAQALG------MK-VLYAE-HKGA--------SVC-RE-GYTPFEEVLK---QADIVTLH 204 (314)
T ss_pred CCCEEEEECCCHHHHHHHHHHhcCC------CE-EEEEC-CCcc--------ccc-cc-ccCCHHHHHH---hCCEEEEc
Confidence 345788884 33355 666666564 33 44555 3221 011 11 2678999887 47999999
Q ss_pred ccChhcH-----HHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCe
Q 007327 86 SSFRSAA-----ASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKV 132 (608)
Q Consensus 86 vp~~~~~-----~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~r 132 (608)
+|-.... ...++.+. -.+++|-++-=+--+++.|.+..++..++
T Consensus 205 ~Plt~~T~~li~~~~l~~mk---~ga~lIN~aRG~~Vde~AL~~aL~~g~i~ 253 (314)
T PRK06932 205 CPLTETTQNLINAETLALMK---PTAFLINTGRGPLVDEQALLDALENGKIA 253 (314)
T ss_pred CCCChHHhcccCHHHHHhCC---CCeEEEECCCccccCHHHHHHHHHcCCcc
Confidence 9965433 23444443 23344444432333888898888876655
No 265
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=48.51 E-value=1.8e+02 Score=30.11 Aligned_cols=71 Identities=17% Similarity=0.247 Sum_probs=44.4
Q ss_pred cccCCHHHHhhcCCCccEEEEeccC----hhcHHHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCe---EEcC
Q 007327 64 PVHSTVEAACAAHPMADVFINFSSF----RSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKV---VIGP 136 (608)
Q Consensus 64 ~~y~sv~~i~~~~p~vDlavi~vp~----~~~~~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~r---vlGP 136 (608)
.++.-+.++-.. +++-+++ ..=. +.-++..++.|.+.|+.+++|.-- +.....++.+.++++|+. ++-|
T Consensus 78 ~~~~~~~~~r~~-~~~p~vl-m~Y~N~i~~~G~e~F~~~~~~aGvdgviipDL--P~ee~~~~~~~~~~~gi~~I~lv~P 153 (263)
T CHL00200 78 KILSILSEVNGE-IKAPIVI-FTYYNPVLHYGINKFIKKISQAGVKGLIIPDL--PYEESDYLISVCNLYNIELILLIAP 153 (263)
T ss_pred HHHHHHHHHhcC-CCCCEEE-EecccHHHHhCHHHHHHHHHHcCCeEEEecCC--CHHHHHHHHHHHHHcCCCEEEEECC
Confidence 456666665432 2334332 2211 123567899999999999998543 334577899999999974 4455
Q ss_pred Cc
Q 007327 137 AT 138 (608)
Q Consensus 137 Nc 138 (608)
++
T Consensus 154 tT 155 (263)
T CHL00200 154 TS 155 (263)
T ss_pred CC
Confidence 43
No 266
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=48.43 E-value=3.3e+02 Score=28.63 Aligned_cols=171 Identities=13% Similarity=0.182 Sum_probs=93.9
Q ss_pred ecc-cccCCHHHHhhcCCCccEEEEeccChhcHHHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHh-CCCeEEc---
Q 007327 61 IAI-PVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARS-NNKVVIG--- 135 (608)
Q Consensus 61 ~G~-~~y~sv~~i~~~~p~vDlavi~vp~~~~~~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~-~g~rvlG--- 135 (608)
.|+ ....+++++++ -+ .+.++++.+.+++.+.+.++|++ +|=-|.-|=...+..+.+++++ +.+-++|
T Consensus 51 ~Gv~~~v~~~~~v~~----~~--~ViirAHGv~~~~~~~~~~~gl~-viDaTCP~V~kv~~~v~~~~~~Gy~iiiiG~~~ 123 (280)
T TIGR00216 51 RGVFFFLEDLDEVAA----GD--TVIIRAHGVPPEVREELEKKGLE-VIDATCPLVTKVHNAVKKYAKEGYHVILIGKKN 123 (280)
T ss_pred CCCEEeecCcccCCC----CC--EEEEeCCCCCHHHHHHHHHCCCe-EEeCCCcccHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 574 55577777542 12 44478888889999999999887 2222334444567777777777 4577889
Q ss_pred -CCcccccccCcccccccCCcccccccccCCCCCcEEEEecChhH---HHHHHHHHHhcC--CceeEEeecCCCC-CCCC
Q 007327 136 -PATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGM---SNELYNTIARVT--DGIYEGIAIGGDV-FPGS 208 (608)
Q Consensus 136 -PNc~Gi~~~~~~~l~~~~~~~~~~~p~~~~~~G~valvSQSG~l---~~~~~~~~~~~g--~G~s~~vs~Gn~~-~~dv 208 (608)
|.-.|+........ .+..+... . .....+.+++++||.--- ...+.+.+.++. .-...+ |.. ..-.
T Consensus 124 HpEv~gi~g~~~~~~-~vv~~~~d-~-~~l~~~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~----nTIC~AT~ 196 (280)
T TIGR00216 124 HPEVIGTRGYAPDKA-IVVETLED-L-ENFKVEDLLGVVSQTTLSQEDTKEIVAELKARVPQKEVPVF----NTICYATQ 196 (280)
T ss_pred CCeeeeeccCcCCCE-EEECCHHH-H-HhCCCCCcEEEEEcCCCcHHHHHHHHHHHHHhCCCcCCCCC----CCcccccH
Confidence 77777765432000 00011000 0 011135679999997544 344556666554 211111 211 0011
Q ss_pred CHHHHHHHhhcCCCccEEEEEEecCCccHHHHHHHHHhC
Q 007327 209 TLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQG 247 (608)
Q Consensus 209 ~~~d~l~~l~~Dp~T~~I~ly~E~g~~~~~~f~~~~r~a 247 (608)
+=.+.+.-|+. ++.++++.+-...+|.+++.+.+++.
T Consensus 197 ~RQ~a~~~la~--~vD~miVVGg~nSsNT~rL~ei~~~~ 233 (280)
T TIGR00216 197 NRQDAVKELAP--EVDLMIVIGGKNSSNTTRLYEIAEEH 233 (280)
T ss_pred HHHHHHHHHHh--hCCEEEEECCCCCchHHHHHHHHHHh
Confidence 11233444444 36777776332334788999998873
No 267
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=48.09 E-value=73 Score=28.69 Aligned_cols=70 Identities=17% Similarity=0.141 Sum_probs=43.0
Q ss_pred cccCCHHHHhhcCCCccEEEEeccChhc---HHHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCC-eEEcCCc
Q 007327 64 PVHSTVEAACAAHPMADVFINFSSFRSA---AASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNK-VVIGPAT 138 (608)
Q Consensus 64 ~~y~sv~~i~~~~p~vDlavi~vp~~~~---~~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~-rvlGPNc 138 (608)
|.-.-++.+.. . ++|+++++...... +..+++.+.++|.+.+.++.+|=... +..+..++.|+ .+++|+|
T Consensus 38 p~e~~~~~a~~-~-~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~---~~~~~~~~~G~d~~~~~~~ 111 (122)
T cd02071 38 TPEEIVEAAIQ-E-DVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGIIPP---EDYELLKEMGVAEIFGPGT 111 (122)
T ss_pred CHHHHHHHHHH-c-CCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCCCH---HHHHHHHHCCCCEEECCCC
Confidence 44444444433 3 48999998765432 34567778777776666666663322 22355567888 6888887
No 268
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=48.06 E-value=1.2e+02 Score=28.94 Aligned_cols=88 Identities=18% Similarity=0.169 Sum_probs=56.7
Q ss_pred EEEEecChhHHHHHHHHHHhcCCceeEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCccHHHHHHHHHhCC-
Q 007327 170 VGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGK- 248 (608)
Q Consensus 170 valvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~T~~I~ly~E~g~~~~~~f~~~~r~a~- 248 (608)
+=+..-.|+++..+..++.+++ -.++|=+|-.....-...+.++.+.+. ..++. |....+.|++.+.++..+..
T Consensus 3 ylitGG~gglg~~la~~La~~~--~~~~il~~r~~~~~~~~~~~i~~l~~~-g~~v~--~~~~Dv~d~~~v~~~~~~~~~ 77 (181)
T PF08659_consen 3 YLITGGLGGLGQSLARWLAERG--ARRLILLGRSGAPSAEAEAAIRELESA-GARVE--YVQCDVTDPEAVAAALAQLRQ 77 (181)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT---SEEEEEESSGGGSTTHHHHHHHHHHT-T-EEE--EEE--TTSHHHHHHHHHTSHT
T ss_pred EEEECCccHHHHHHHHHHHHcC--CCEEEEeccCCCccHHHHHHHHHHHhC-CCcee--eeccCccCHHHHHHHHHHHHh
Confidence 4455668999999999999988 667777777721245667888888886 44444 44445889999888888764
Q ss_pred CCCCE--EEEEeCCCc
Q 007327 249 VNKPV--VAWVSGTCA 262 (608)
Q Consensus 249 ~~KPV--vvlk~Grs~ 262 (608)
...|| |+.-+|...
T Consensus 78 ~~~~i~gVih~ag~~~ 93 (181)
T PF08659_consen 78 RFGPIDGVIHAAGVLA 93 (181)
T ss_dssp TSS-EEEEEE------
T ss_pred ccCCcceeeeeeeeec
Confidence 44687 777766654
No 269
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=47.93 E-value=2.1e+02 Score=31.59 Aligned_cols=155 Identities=13% Similarity=0.101 Sum_probs=88.2
Q ss_pred ChhcHHHHHHHhcCCCCCEEEEecCCCCHH---HHHHHHHHHHhCCCeEEcCCcccccccCccccc-ccCCccccccccc
Q 007327 88 FRSAAASSMAALKQPTIRVVAIIAEGVPEA---DTKQLIAYARSNNKVVIGPATVGGIQAGAFKIG-DTAGTIDNIIHCK 163 (608)
Q Consensus 88 ~~~~~~~~le~~~~~gv~~~viis~Gf~e~---~~~~l~~~a~~~g~rvlGPNc~Gi~~~~~~~l~-~~~~~~~~~~p~~ 163 (608)
.+....++.+.+.+...+.++|+|+..+|. |.+.+.+.+++.+++|+-=||-|+-.....+.. .+.+-+....+..
T Consensus 71 ~~kL~~~I~~~~~~~~p~~I~V~ttC~~~~IGdDi~~v~~~~~~~~~~vi~v~t~gf~g~~~~G~~~a~~al~~~~~~~~ 150 (427)
T cd01971 71 EDRLRELIKSTLSIIDADLFVVLTGCIAEIIGDDVGAVVSEFQEGGAPIVYLETGGFKGNNYAGHEIVLKAIIDQYVGQS 150 (427)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCCcHHHhhcCHHHHHHHhhhcCCCEEEEECCCcCcccccHHHHHHHHHHHHhccCC
Confidence 333334444445545688999999999998 555555555677899999999998754321100 0001111111211
Q ss_pred -CCCCCcEEEEecC----h---hHHHHHHHHHHhcCCceeEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCc
Q 007327 164 -LYRPGSVGFVSKS----G---GMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGR 235 (608)
Q Consensus 164 -~~~~G~valvSQS----G---~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~T~~I~ly~E~g~~ 235 (608)
...++.|-++.-+ . +=..++-..+.+.|+-...+++.+ .++.| +.+=++-+.-++.-. .
T Consensus 151 ~~~~~~~VNiiG~~~~~~~~~~~d~~elk~lL~~~Gl~v~~~~~~~------~~~~e----i~~~~~A~~niv~~~---~ 217 (427)
T cd01971 151 EEKEPGLVNLWGPVPYQDPFWRGDLEEIKRVLEGIGLKVNILFGPE------SNGEE----LRSIPKAQFNLVLSP---W 217 (427)
T ss_pred CCCCCCeEEEEeccCCccccccccHHHHHHHHHHCCCeEEEEECCC------CCHHH----HHhcccCcEEEEEcH---h
Confidence 1357889999632 1 223667778887788777666543 23333 445555554443321 2
Q ss_pred cHHHHHHHHHhCCCCCCEEEE
Q 007327 236 DEYSLVEALKQGKVNKPVVAW 256 (608)
Q Consensus 236 ~~~~f~~~~r~a~~~KPVvvl 256 (608)
.+..+.+.+++ +.+.|.+.+
T Consensus 218 ~g~~~a~~L~~-~~giP~i~~ 237 (427)
T cd01971 218 VGLEFAQHLEE-KYGQPYIHS 237 (427)
T ss_pred hHHHHHHHHHH-HhCCceEec
Confidence 34566666665 357887764
No 270
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=47.71 E-value=1.1e+02 Score=31.18 Aligned_cols=34 Identities=3% Similarity=0.009 Sum_probs=24.9
Q ss_pred ccEEEEeccCh----hcHHHHHHHhcCCCCCEEEEecC
Q 007327 79 ADVFINFSSFR----SAAASSMAALKQPTIRVVAIIAE 112 (608)
Q Consensus 79 vDlavi~vp~~----~~~~~~le~~~~~gv~~~viis~ 112 (608)
+|.++.+.|.. .....++++|.+.|||.+|.+|+
T Consensus 68 ~d~v~~~~~~~~~~~~~~~~~i~aa~~~gv~~~V~~Ss 105 (285)
T TIGR03649 68 ISAVYLVAPPIPDLAPPMIKFIDFARSKGVRRFVLLSA 105 (285)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHHHHHcCCCEEEEeec
Confidence 78887766632 12446788898999999988875
No 271
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=47.60 E-value=55 Score=33.97 Aligned_cols=67 Identities=10% Similarity=0.111 Sum_probs=40.0
Q ss_pred ccCCHHHHhhcCCCccEEEEeccC---hhcHHHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCeE
Q 007327 65 VHSTVEAACAAHPMADVFINFSSF---RSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVV 133 (608)
Q Consensus 65 ~y~sv~~i~~~~p~vDlavi~vp~---~~~~~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~rv 133 (608)
++.-++++-...+++.+.+..=-. ..-++..+++|.+.|+.+++|.- .+-+..+++.+.++++|+.+
T Consensus 74 ~~~~~~~ir~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipD--LP~ee~~~~~~~~~~~gl~~ 143 (259)
T PF00290_consen 74 IFELVKEIRKKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPD--LPPEESEELREAAKKHGLDL 143 (259)
T ss_dssp HHHHHHHHHHHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETT--SBGGGHHHHHHHHHHTT-EE
T ss_pred HHHHHHHHhccCCCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcC--CChHHHHHHHHHHHHcCCeE
Confidence 455666665233334444432111 11245678889989999888743 44445678899999999764
No 272
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=46.56 E-value=1e+02 Score=32.58 Aligned_cols=108 Identities=18% Similarity=0.213 Sum_probs=64.6
Q ss_pred ch-HHHHHhhCcccCCCCCCcEEEEeCC-CCCC-ccccccCceeecccccCCHHHHhhcCCCccEEEEeccChhcHHHHH
Q 007327 20 QL-PIQRMLDFDFLCGRETPSVAGIINP-GAEG-FQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRSAAASSM 96 (608)
Q Consensus 20 ~~-~~~~l~~~~~~~~~g~~~v~~v~~p-~~~~-~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~~~~l 96 (608)
|. .+|-++..- |.++|+.+++- .|.| +..++-|..-.|+.+-.++++..... .|.++ ..|-...+++.
T Consensus 14 Gv~air~l~akp-----e~elvgawv~s~ak~Gkdlgelagl~dlgV~a~~~~~avlAtl--~~~~~-y~~~~~~~~~y- 84 (350)
T COG3804 14 GVAAIRGLLAKP-----ELELVGAWVHSAAKSGKDLGELAGLPDLGVIATNSIDAVLATL--ADAVI-YAPLLPSVDEY- 84 (350)
T ss_pred HHHHHHHHHcCC-----CCceEEEEecCcccccccHHHhcCCCCceeEeecccccceecc--cccee-eecccchHHHH-
Confidence 44 778777762 56789988753 3333 66666665557888887877765432 23333 33332224454
Q ss_pred HHhcCCCCCEEEE-----ecCCCCHHHHHHHHHHHHhCCC-eEEcC
Q 007327 97 AALKQPTIRVVAI-----IAEGVPEADTKQLIAYARSNNK-VVIGP 136 (608)
Q Consensus 97 e~~~~~gv~~~vi-----is~Gf~e~~~~~l~~~a~~~g~-rvlGP 136 (608)
+.|-++|+..+-- +..+...++.+++.+.|.++|- .+.|-
T Consensus 85 ~rlL~aGiNVv~~g~~l~yPw~~~PelaeKpl~lAaraGn~Tl~gt 130 (350)
T COG3804 85 ARLLRAGINVVTPGPVLQYPWFYPPELAEKPLELAARAGNATLHGT 130 (350)
T ss_pred HHHHHcCCceeccCccccCCCcCChHHhhchHHHHHhcCCceEEec
Confidence 4455588873222 1224455578888888888876 67664
No 273
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=46.54 E-value=3.1e+02 Score=27.24 Aligned_cols=149 Identities=13% Similarity=0.061 Sum_probs=68.2
Q ss_pred HHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCeEEcCCcc------cccccCcccccccCCcccccccccCCC
Q 007327 93 ASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATV------GGIQAGAFKIGDTAGTIDNIIHCKLYR 166 (608)
Q Consensus 93 ~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~rvlGPNc~------Gi~~~~~~~l~~~~~~~~~~~p~~~~~ 166 (608)
...++.+...++.++|+..... + ...+.++.+++.|+.++.-|+. ..+.++....+ -.....+-.....
T Consensus 50 ~~~~~~~~~~~vdgiIi~~~~~-~-~~~~~l~~~~~~~iPvv~~~~~~~~~~~~~v~~d~~~~g---~~~~~~l~~~~~g 124 (272)
T cd06300 50 IADIRNLIAQGVDAIIINPASP-T-ALNPVIEEACEAGIPVVSFDGTVTTPCAYNVNEDQAEFG---KQGAEWLVKELGG 124 (272)
T ss_pred HHHHHHHHHcCCCEEEEeCCCh-h-hhHHHHHHHHHCCCeEEEEecCCCCCceeEecCCHHHHH---HHHHHHHHHHcCC
Confidence 3555665657888888765321 1 1223456667788887765532 11111110000 0000000000013
Q ss_pred CCcEEEEec-Chh-----HHHHHHHHHHhcC-CceeEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCccHHH
Q 007327 167 PGSVGFVSK-SGG-----MSNELYNTIARVT-DGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYS 239 (608)
Q Consensus 167 ~G~valvSQ-SG~-----l~~~~~~~~~~~g-~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~T~~I~ly~E~g~~~~~~ 239 (608)
.++|++++- .+. -...+.+.+.+.+ +-+...+. ++... +-...-+-+++...|+.++|.+.-. . ...
T Consensus 125 ~~~i~~i~~~~~~~~~~~R~~g~~~a~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~l~~~~~~~~i~~~~d---~-A~g 198 (272)
T cd06300 125 KGNVLVVRGLAGHPVDEDRYAGAKEVLKEYPGIKIVGEVY-GDWDQ-AVAQKAVADFLASNPDVDGIWTQGG---D-AVG 198 (272)
T ss_pred CceEEEEECCCCCcchHHHHHHHHHHHHHCCCcEEEeecC-CCCCH-HHHHHHHHHHHHhCCCcCEEEecCC---C-cHH
Confidence 456888852 111 1122344444554 43332222 22210 2223344455666787777777644 3 556
Q ss_pred HHHHHHhCCCCCC
Q 007327 240 LVEALKQGKVNKP 252 (608)
Q Consensus 240 f~~~~r~a~~~KP 252 (608)
+++++++...+.|
T Consensus 199 ~~~al~~~g~~~p 211 (272)
T cd06300 199 AVQAFEQAGRDIP 211 (272)
T ss_pred HHHHHHHcCCCCc
Confidence 7777777544444
No 274
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=46.48 E-value=18 Score=32.08 Aligned_cols=73 Identities=18% Similarity=0.077 Sum_probs=47.3
Q ss_pred eecccccCCHHHHhhcCCCccEEEEeccChhcHHHHHHHhcCCCCCEEEEecCCCC-HHHHHHHHHHHHhCCCeEE
Q 007327 60 EIAIPVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVP-EADTKQLIAYARSNNKVVI 134 (608)
Q Consensus 60 v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~~~~le~~~~~gv~~~viis~Gf~-e~~~~~l~~~a~~~g~rvl 134 (608)
..+...+.+++++.... ++|++|=|.+... +....+.+-++|+..+..--..++ +..-++|.+.|+++|.++.
T Consensus 42 ~~~~~~~~~~~~~~~~~-~~dvvVE~t~~~~-~~~~~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~~~~ 115 (117)
T PF03447_consen 42 FPDEAFTTDLEELIDDP-DIDVVVECTSSEA-VAEYYEKALERGKHVVTANKGALADEALYEELREAARKNGVRIY 115 (117)
T ss_dssp HTHSCEESSHHHHHTHT-T-SEEEE-SSCHH-HHHHHHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-EEE
T ss_pred cccccccCCHHHHhcCc-CCCEEEECCCchH-HHHHHHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCCEEE
Confidence 34567888899887643 4899999877765 555556565588864443222333 2367899999999998864
No 275
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=46.16 E-value=80 Score=33.89 Aligned_cols=242 Identities=14% Similarity=0.116 Sum_probs=122.6
Q ss_pred CcEEEEEcCCch----HHHHHhhCcccCCCCCCcEEEEeCCCCCC---ccccccCc------eeecccccCCHHHHhhcC
Q 007327 10 TTQALFYNYKQL----PIQRMLDFDFLCGRETPSVAGIINPGAEG---FQKLFFGQ------EEIAIPVHSTVEAACAAH 76 (608)
Q Consensus 10 ~s~avv~g~~~~----~~~~l~~~~~~~~~g~~~v~~v~~p~~~~---~~~~~~g~------ev~G~~~y~sv~~i~~~~ 76 (608)
...+.|-|++|- +++.|+..||. +.+-|-.|.... ....+.|. -...+.-|.|+.++..
T Consensus 6 ~~~VcVTGAsGfIgswivk~LL~rGY~------V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~-- 77 (327)
T KOG1502|consen 6 GKKVCVTGASGFIGSWIVKLLLSRGYT------VRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAID-- 77 (327)
T ss_pred CcEEEEeCCchHHHHHHHHHHHhCCCE------EEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHh--
Confidence 345556677766 99999999996 444454353310 11112221 1356677778877765
Q ss_pred CCccEEE-Eecc---------------ChhcHHHHHHHhcCCC-CCEEEEecC----C-----------CCHH-------
Q 007327 77 PMADVFI-NFSS---------------FRSAAASSMAALKQPT-IRVVAIIAE----G-----------VPEA------- 117 (608)
Q Consensus 77 p~vDlav-i~vp---------------~~~~~~~~le~~~~~g-v~~~viis~----G-----------f~e~------- 117 (608)
..|.++ ++-| +-.-...++++|.+.. ||.+|+.|| . +.|+
T Consensus 78 -gcdgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~TSS~aAv~~~~~~~~~~~vvdE~~wsd~~~ 156 (327)
T KOG1502|consen 78 -GCDGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVVYTSSTAAVRYNGPNIGENSVVDEESWSDLDF 156 (327)
T ss_pred -CCCEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcceEEEeccHHHhccCCcCCCCCcccccccCCcHHH
Confidence 256554 1112 2122357899999877 999988765 1 1121
Q ss_pred --------------HHHHHHHHHHhCCCeEEcCCcccccccCcccccccCCcccccccccCCCCCcEEEEecChhHHHHH
Q 007327 118 --------------DTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNEL 183 (608)
Q Consensus 118 --------------~~~~l~~~a~~~g~rvlGPNc~Gi~~~~~~~l~~~~~~~~~~~p~~~~~~G~valvSQSG~l~~~~ 183 (608)
.|++--++|+++|+.++ .+||.. -+| +.. .| -+--|-.+...+
T Consensus 157 ~~~~~~~Y~~sK~lAEkaAw~fa~e~~~~lv------~inP~l-V~G-------P~l-----~~----~l~~s~~~~l~~ 213 (327)
T KOG1502|consen 157 CRCKKLWYALSKTLAEKAAWEFAKENGLDLV------TINPGL-VFG-------PGL-----QP----SLNSSLNALLKL 213 (327)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhCCccEE------EecCCc-eEC-------CCc-----cc----ccchhHHHHHHH
Confidence 25566778888876544 344443 121 000 01 001111122222
Q ss_pred HHHHHhcCCceeEEeecCCCCCCCC-CHHHHHHHhhcCCCccEEEEEEecCCccHHHHHHHHHhCCCCCCEEEEEeCCCc
Q 007327 184 YNTIARVTDGIYEGIAIGGDVFPGS-TLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCA 262 (608)
Q Consensus 184 ~~~~~~~g~G~s~~vs~Gn~~~~dv-~~~d~l~~l~~Dp~T~~I~ly~E~g~~~~~~f~~~~r~a~~~KPVvvlk~Grs~ 262 (608)
+.-......++... +.|+ |+++.-=...++|.++.--+... ....-.+.++.+++.-...| |. -+
T Consensus 214 i~G~~~~~~n~~~~-------~VdVrDVA~AHv~a~E~~~a~GRyic~~-~~~~~~ei~~~l~~~~P~~~-ip---~~-- 279 (327)
T KOG1502|consen 214 IKGLAETYPNFWLA-------FVDVRDVALAHVLALEKPSAKGRYICVG-EVVSIKEIADILRELFPDYP-IP---KK-- 279 (327)
T ss_pred HhcccccCCCCcee-------eEeHHHHHHHHHHHHcCcccCceEEEec-CcccHHHHHHHHHHhCCCCC-CC---CC--
Confidence 22111111222111 1122 23444455778999887777766 55557778888887543434 11 11
Q ss_pred cCcccccccCCCCCcCCCCcchHHHHHHHHHHcCCcccCCHHHHHH
Q 007327 263 RLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFES 308 (608)
Q Consensus 263 ~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaGvi~v~~~~el~~ 308 (608)
-.-+|-+.+.. . ...+.-++..|...-..++|.+.
T Consensus 280 ------~~~~~~~~~~~-~----~~~~~k~k~lg~~~~~~l~e~~~ 314 (327)
T KOG1502|consen 280 ------NAEEHEGFLTS-F----KVSSEKLKSLGGFKFRPLEETLS 314 (327)
T ss_pred ------CCccccccccc-c----ccccHHHHhcccceecChHHHHH
Confidence 11122222110 1 23445678888666677777654
No 276
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=46.15 E-value=70 Score=34.43 Aligned_cols=94 Identities=12% Similarity=0.029 Sum_probs=49.0
Q ss_pred CCcEEEEE--cCCch-HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeeccccc-CCHHHHhhcCCCccEEEE
Q 007327 9 KTTQALFY--NYKQL-PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVH-STVEAACAAHPMADVFIN 84 (608)
Q Consensus 9 p~s~avv~--g~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y-~sv~~i~~~~p~vDlavi 84 (608)
+.+|+|+| |+.|+ +++.|.+.++. ..++. .+......|+.-.+.| . .+++= .+..+. . ++|++++
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~hP---~~~l~-~v~s~~~aG~~l~~~~-~--~l~~~~~~~~~~-~---~vD~vFl 72 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDFP---VGTLH-LLASSESAGHSVPFAG-K--NLRVREVDSFDF-S---QVQLAFF 72 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCCC---ceEEE-EEECcccCCCeeccCC-c--ceEEeeCChHHh-c---CCCEEEE
Confidence 36788885 33333 78888865443 22233 3332433332222222 1 11111 011222 2 4899999
Q ss_pred eccChhcHHHHHHHhcCCCCCEEEEecCCCC
Q 007327 85 FSSFRSAAASSMAALKQPTIRVVAIIAEGVP 115 (608)
Q Consensus 85 ~vp~~~~~~~~le~~~~~gv~~~viis~Gf~ 115 (608)
++|... .....+.+.++|++ +|=.|+-|.
T Consensus 73 a~p~~~-s~~~v~~~~~~G~~-VIDlS~~fR 101 (336)
T PRK05671 73 AAGAAV-SRSFAEKARAAGCS-VIDLSGALP 101 (336)
T ss_pred cCCHHH-HHHHHHHHHHCCCe-EEECchhhc
Confidence 999764 56677777667875 444566664
No 277
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=45.85 E-value=66 Score=34.63 Aligned_cols=36 Identities=17% Similarity=0.002 Sum_probs=26.5
Q ss_pred CccEEEEeccChhcHHHHHHHhcCCCCCEEEEecCCCC
Q 007327 78 MADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVP 115 (608)
Q Consensus 78 ~vDlavi~vp~~~~~~~~le~~~~~gv~~~viis~Gf~ 115 (608)
++|++++|+|... .......+.++| +.+|=.|+.|.
T Consensus 68 ~~DvVf~alP~~~-s~~~~~~~~~~G-~~VIDlS~~fR 103 (346)
T TIGR01850 68 DADVVFLALPHGV-SAELAPELLAAG-VKVIDLSADFR 103 (346)
T ss_pred CCCEEEECCCchH-HHHHHHHHHhCC-CEEEeCChhhh
Confidence 4899999999975 566667776677 44666777774
No 278
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=45.48 E-value=23 Score=36.78 Aligned_cols=52 Identities=12% Similarity=0.049 Sum_probs=29.6
Q ss_pred ccccCCHHHHhhcCCCccEEEEeccChhcH-HHHHHHhcCCCCC-EEE-EecCCCCHH
Q 007327 63 IPVHSTVEAACAAHPMADVFINFSSFRSAA-ASSMAALKQPTIR-VVA-IIAEGVPEA 117 (608)
Q Consensus 63 ~~~y~sv~~i~~~~p~vDlavi~vp~~~~~-~~~le~~~~~gv~-~~v-iis~Gf~e~ 117 (608)
+....++++... +.|+++.+||....+ ..++.++.+.--+ .++ +-+|.++.+
T Consensus 69 i~~~~~~~~~~~---~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~ 123 (288)
T PRK09260 69 LSYSLDLKAAVA---DADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPT 123 (288)
T ss_pred eEEeCcHHHhhc---CCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH
Confidence 445567766544 489999999987533 2344444321112 233 457777764
No 279
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=44.55 E-value=17 Score=33.61 Aligned_cols=112 Identities=16% Similarity=0.077 Sum_probs=55.5
Q ss_pred CCCCcEEEEEc-CCch-HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecc----cccCCHHHHhhcCCCcc
Q 007327 7 FSKTTQALFYN-YKQL-PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAI----PVHSTVEAACAAHPMAD 80 (608)
Q Consensus 7 ~~p~s~avv~g-~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~----~~y~sv~~i~~~~p~vD 80 (608)
++++++.++|. ..|+ +.+.+.+.++ ..|..++ ..... ...+ .+-.+. ..+.+..+..+ ++|
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~------~~v~v~~-r~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~---~~D 83 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGA------AKIVIVN-RTLEK-AKAL--AERFGELGIAIAYLDLEELLA---EAD 83 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC------CEEEEEc-CCHHH-HHHH--HHHHhhcccceeecchhhccc---cCC
Confidence 56678888852 1222 7778877641 1354555 32210 0000 001111 13445555433 589
Q ss_pred EEEEeccChhc-HHH--HHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCeEEc
Q 007327 81 VFINFSSFRSA-AAS--SMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIG 135 (608)
Q Consensus 81 lavi~vp~~~~-~~~--~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~rvlG 135 (608)
++|+++|.... +.. ..+.+.+.|. .++-+++ .++.. ++.+.+++.|++++.
T Consensus 84 vvi~~~~~~~~~~~~~~~~~~~~~~~~-~v~D~~~-~~~~~--~l~~~~~~~g~~~v~ 137 (155)
T cd01065 84 LIINTTPVGMKPGDELPLPPSLLKPGG-VVYDVVY-NPLET--PLLKEARALGAKTID 137 (155)
T ss_pred EEEeCcCCCCCCCCCCCCCHHHcCCCC-EEEEcCc-CCCCC--HHHHHHHHCCCceeC
Confidence 99999999752 111 1122222332 2222332 34322 788889999887664
No 280
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits
Probab=44.37 E-value=4.1e+02 Score=28.04 Aligned_cols=125 Identities=9% Similarity=0.007 Sum_probs=72.1
Q ss_pred HHHHHHHHHhCCCeEEcCCcccccc-cCcccccccCCcccccccc------------cCCCCCcEEEEecChhHHH----
Q 007327 119 TKQLIAYARSNNKVVIGPATVGGIQ-AGAFKIGDTAGTIDNIIHC------------KLYRPGSVGFVSKSGGMSN---- 181 (608)
Q Consensus 119 ~~~l~~~a~~~g~rvlGPNc~Gi~~-~~~~~l~~~~~~~~~~~p~------------~~~~~G~valvSQSG~l~~---- 181 (608)
...+..++...++.+++|.+-.-.- ....+. ..|....|. ..+.--.|++|..+...+.
T Consensus 79 ~~~~~~v~~~~~iP~Is~~~~~~~~~s~~~~~----~~~~R~~p~~~~~~~ai~~ll~~~~w~~vaii~~~~~~g~~~~~ 154 (362)
T cd06367 79 AQILDFTSAQTRIPVVGISGRESIFMSDKNIH----SLFLQTGPSLEQQADVMLEILEEYDWHQFSVVTSRDPGYRDFLD 154 (362)
T ss_pred hhhhhhhhhhhcCcEEEeeccccccccCCCcc----cceEeecCcHHHHHHHHHHHHHHcCCeEEEEEEEcCcccHHHHH
Confidence 4566778899999999986643211 111010 111111111 1235568999999777633
Q ss_pred HHHHHHHhcCCc--eeEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCccHHHHHHHHHhCCCCCC
Q 007327 182 ELYNTIARVTDG--IYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKP 252 (608)
Q Consensus 182 ~~~~~~~~~g~G--~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~T~~I~ly~E~g~~~~~~f~~~~r~a~~~KP 252 (608)
.+...+++.|+- +...+..-... .-++.+++..+.+ ...++|+++.. ..+...|++.+++.....|
T Consensus 155 ~l~~~l~~~g~~~~i~~~~~~~~~~--~~~~~~~l~~l~~-~~~~vivl~~~--~~~~~~il~~a~~~g~~~~ 222 (362)
T cd06367 155 RVETTLEESFVGWEFQLVLTLDLSD--DDGDARLLRQLKK-LESRVILLYCS--KEEAERIFEAAASLGLTGP 222 (362)
T ss_pred HHHHHHHhcccceeeeeeEEeccCC--CcchHHHHHHHHh-cCCcEEEEeCC--HHHHHHHHHHHHHcCCCCC
Confidence 344445556665 33333222111 2266777777665 56789998876 4667889999888764444
No 281
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=44.18 E-value=59 Score=33.68 Aligned_cols=46 Identities=13% Similarity=0.081 Sum_probs=28.7
Q ss_pred cCCHHHHhhcCCCccEEEEeccChhcHHHHHHHhcCC-CCCE-EEEecCCCC
Q 007327 66 HSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQP-TIRV-VAIIAEGVP 115 (608)
Q Consensus 66 y~sv~~i~~~~p~vDlavi~vp~~~~~~~~le~~~~~-gv~~-~viis~Gf~ 115 (608)
..+.+++.+ +.|++++++|+.. +..+++.+... +-+. ++.+.-|+.
T Consensus 59 ~~~~~~~~~---~~d~vilavk~~~-~~~~~~~l~~~~~~~~~ii~~~nG~~ 106 (305)
T PRK12921 59 ITDPEELTG---PFDLVILAVKAYQ-LDAAIPDLKPLVGEDTVIIPLQNGIG 106 (305)
T ss_pred ecCHHHccC---CCCEEEEEecccC-HHHHHHHHHhhcCCCCEEEEeeCCCC
Confidence 344554322 4899999999975 77888877642 1122 334556875
No 282
>PF09350 DUF1992: Domain of unknown function (DUF1992); InterPro: IPR018961 This entry represents a family of proteins that may have a role in protein folding or as a chaperone. DnaJ is a member of the J-protein family, which are defined by the presence of a J domain that can regulate the activity of 70kDa heat-shock proteins []. Some of the proteins in this entry contain a J domain.
Probab=44.08 E-value=1.2e+02 Score=25.01 Aligned_cols=57 Identities=14% Similarity=0.246 Sum_probs=38.9
Q ss_pred HHHHHHHHHHcCC--CcCCCCCCCCCCCCCcHHH----HHHHHHHHHhCCCChHHHHHHHHHHH
Q 007327 469 AYEFVESMKKKGI--RVPGIGHRIKRGDNRDKRV----ELLQKFARTHFPSVKYMEYAVQVETY 526 (608)
Q Consensus 469 ~~~~v~~~l~~~~--~ipGFGH~vy~~~~~DPRa----~~L~~~~~~~~~~~~~~~~a~~~e~~ 526 (608)
+++.|++..++|+ .+||.|-|+-..++ ||.. ..+.++.+..+.--+++++-.++++.
T Consensus 2 ~e~~I~~A~~~GeFdnLpG~GKPL~~~~~-~~~~~~~~~~~~~iLk~~g~lPp~i~l~kei~~l 64 (71)
T PF09350_consen 2 AERRIREAMARGEFDNLPGAGKPLPLDDD-NPYWPAEERMANRILKNAGYLPPWIELRKEIEEL 64 (71)
T ss_pred HHHHHHHHHHcCCccCCCCCCCCCCCCCC-CcCCCHHHHHHHHhhcccCCCCHHHHHHHHHHHH
Confidence 4567888888884 89999999986433 3433 34444444445557888888888765
No 283
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=43.90 E-value=1.2e+02 Score=31.39 Aligned_cols=115 Identities=10% Similarity=0.034 Sum_probs=67.5
Q ss_pred cEEEEE-c-CCchHHHHHhhCcccCCCCCCcEE-EEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecc
Q 007327 11 TQALFY-N-YKQLPIQRMLDFDFLCGRETPSVA-GIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSS 87 (608)
Q Consensus 11 s~avv~-g-~~~~~~~~l~~~~~~~~~g~~~v~-~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi~vp 87 (608)
.+-+|| | ++.++++++++.|.. +|+ -+| |..- +.. .-.|.+.-.|+.+.....+.+-.+=+.||
T Consensus 2 ~iGmiGLGrMG~n~v~rl~~~ghd------vV~yD~n-~~av---~~~---~~~ga~~a~sl~el~~~L~~pr~vWlMvP 68 (300)
T COG1023 2 QIGMIGLGRMGANLVRRLLDGGHD------VVGYDVN-QTAV---EEL---KDEGATGAASLDELVAKLSAPRIVWLMVP 68 (300)
T ss_pred cceeeccchhhHHHHHHHHhCCCe------EEEEcCC-HHHH---HHH---HhcCCccccCHHHHHHhcCCCcEEEEEcc
Confidence 345664 3 444599999998643 332 233 4111 011 12446666777777665555778889999
Q ss_pred ChhcHHHHHHHhcCCCCCEEEEecCCCCH-HHHHHHHHHHHhCCCeEEcCCc
Q 007327 88 FRSAAASSMAALKQPTIRVVAIIAEGVPE-ADTKQLIAYARSNNKVVIGPAT 138 (608)
Q Consensus 88 ~~~~~~~~le~~~~~gv~~~viis~Gf~e-~~~~~l~~~a~~~g~rvlGPNc 138 (608)
+...++++++++...=-+.=+||-.|=+- .+..+-.+...++|+.++=..+
T Consensus 69 ag~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GT 120 (300)
T COG1023 69 AGDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGT 120 (300)
T ss_pred CCCchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccC
Confidence 98778999998886444455566655332 1333333445667777654433
No 284
>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR). Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III.
Probab=43.74 E-value=2.7e+02 Score=30.49 Aligned_cols=123 Identities=15% Similarity=0.062 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhCCCeEEcCCccc--ccccCcccccccCCcccccccc------------cCCCCCcEEEEecChhHHHHH
Q 007327 118 DTKQLIAYARSNNKVVIGPATVG--GIQAGAFKIGDTAGTIDNIIHC------------KLYRPGSVGFVSKSGGMSNEL 183 (608)
Q Consensus 118 ~~~~l~~~a~~~g~rvlGPNc~G--i~~~~~~~l~~~~~~~~~~~p~------------~~~~~G~valvSQSG~l~~~~ 183 (608)
....+..++.+.++.+|.|.+-. +-+... .-+|....|. ..+..-.|++|.++...+...
T Consensus 115 ~~~av~~~~~~~~ip~Is~~sts~~ls~~~~------~~~~fR~~p~d~~~~~a~~~~l~~~~w~~vaii~~~~~~G~~~ 188 (452)
T cd06362 115 VSIQVANLLRLFKIPQISYASTSPELSDKTR------YDYFSRTVPPDSFQAQAMVDIVKAFNWTYVSTVASEGNYGEKG 188 (452)
T ss_pred hHHHHHHHhccccCcccccccCchhhccccc------cCCEEEecCChHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHH
Confidence 34456678888999998885432 111111 0011111111 123556899999987765443
Q ss_pred ----HHHHHhcCCceeEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCccHHHHHHHHHhCCC
Q 007327 184 ----YNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKV 249 (608)
Q Consensus 184 ----~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~T~~I~ly~E~g~~~~~~f~~~~r~a~~ 249 (608)
...+++.|+-+......-... .+.++...+.-+......++|+++.. ..+...|++.+++...
T Consensus 189 ~~~~~~~~~~~gi~i~~~~~~~~~~-~~~d~~~~l~~l~~~~~a~viil~~~--~~~~~~~~~~a~~~g~ 255 (452)
T cd06362 189 IEAFEKLAAERGICIAGSEKIPSSA-TEEEFDNIIRKLLSKPNARVVVLFCR--EDDIRGLLAAAKRLNA 255 (452)
T ss_pred HHHHHHHHHHCCeeEEEEEEcCCCC-CHHHHHHHHHHHhhcCCCeEEEEEcC--hHHHHHHHHHHHHcCC
Confidence 445566677666555554321 14566677777766556899999876 3677889998888654
No 285
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=43.53 E-value=3.3e+02 Score=26.70 Aligned_cols=168 Identities=10% Similarity=0.059 Sum_probs=81.1
Q ss_pred ccCCHHHHhhcCCCccEEEEeccChhcHHHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCeEEcCCcc-----
Q 007327 65 VHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATV----- 139 (608)
Q Consensus 65 ~y~sv~~i~~~~p~vDlavi~vp~~~~~~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~rvlGPNc~----- 139 (608)
.+..+.+...+. ..++.++...........++.+...++.++|+.+..... ...+.+++.|+.++-=+..
T Consensus 17 ~~~~i~~~~~~~-g~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~----~~~~~~~~~~ipvV~~~~~~~~~~ 91 (266)
T cd06278 17 LLEALSRALQAR-GYQPLLINTDDDEDLDAALRQLLQYRVDGVIVTSGTLSS----ELAEECRRNGIPVVLINRYVDGPG 91 (266)
T ss_pred HHHHHHHHHHHC-CCeEEEEcCCCCHHHHHHHHHHHHcCCCEEEEecCCCCH----HHHHHHhhcCCCEEEECCccCCCC
Confidence 333445544544 367666544432223456666677899998886543221 2356667778775543321
Q ss_pred -cccccCcccccccCCcccccccccCCCCCcEEEEecChhH------HHHHHHHHHhcCCceeEEeecCCCCCCCCCHHH
Q 007327 140 -GGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGM------SNELYNTIARVTDGIYEGIAIGGDVFPGSTLSD 212 (608)
Q Consensus 140 -Gi~~~~~~~l~~~~~~~~~~~p~~~~~~G~valvSQSG~l------~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d 212 (608)
-.+..+....+ ......+- .....+|++++.+-.. ...+.+.+.+.++-+...+..+... ......
T Consensus 92 ~~~v~~d~~~~g---~~~~~~l~--~~g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 164 (266)
T cd06278 92 VDAVCSDNYEAG---RLAAELLL--AKGCRRIAFIGGPADTSTSRERERGFRDALAAAGVPVVVEEAGDYSY--EGGYEA 164 (266)
T ss_pred CCEEEEChHHHH---HHHHHHHH--HCCCceEEEEcCCCcccchHHHHHHHHHHHHHcCCChhhhccCCCCH--HHHHHH
Confidence 11111110000 00000000 1134589999754321 1234445556666543322222222 223345
Q ss_pred HHHHhhcCCCccEEEEEEecCCccHHHHHHHHHhC
Q 007327 213 HILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQG 247 (608)
Q Consensus 213 ~l~~l~~Dp~T~~I~ly~E~g~~~~~~f~~~~r~a 247 (608)
+.+++.+.|+.++|+.. +-......++++++.
T Consensus 165 ~~~~l~~~~~~~~i~~~---~~~~a~~~~~~l~~~ 196 (266)
T cd06278 165 ARRLLASRPRPDAIFCA---NDLLAIGVMDAARQE 196 (266)
T ss_pred HHHHHhcCCCCCEEEEc---CcHHHHHHHHHHHHh
Confidence 56677776777776655 223345567777763
No 286
>PF01094 ANF_receptor: Receptor family ligand binding region The Prosite family is a sub-family of the Pfam family; InterPro: IPR001828 This describes a ligand binding domain and includes extracellular ligand binding domains of a wide range of receptors, as well as the bacterial amino acid binding proteins of known structure [].; PDB: 3SAJ_D 3Q41_B 3QEM_C 3QEK_A 3QEL_C 3MQ4_A 3QLV_G 3OM1_A 3QLU_A 3OM0_A ....
Probab=43.49 E-value=3.5e+02 Score=27.67 Aligned_cols=148 Identities=9% Similarity=0.040 Sum_probs=88.0
Q ss_pred CCCCEEEEecCCCCHHHHHHHHHHHHhCCCeEEcCCcccccccC-cccccccCCccccccccc------------CCCCC
Q 007327 102 PTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVGGIQAG-AFKIGDTAGTIDNIIHCK------------LYRPG 168 (608)
Q Consensus 102 ~gv~~~viis~Gf~e~~~~~l~~~a~~~g~rvlGPNc~Gi~~~~-~~~l~~~~~~~~~~~p~~------------~~~~G 168 (608)
.+|.++|- .........+..++...++.++.|.|---.-.. ... ..+|....|.. .+.=-
T Consensus 50 ~~v~aviG---p~~~~~~~~~~~~~~~~~ip~is~~~~~~~ls~~~~~----~~~~~r~~p~~~~~~~a~~~~l~~~~w~ 122 (348)
T PF01094_consen 50 QGVVAVIG---PSCSSSAEAVASLASEWNIPQISPGSTSPSLSDRKTR----YPTFFRTVPSDSSQARALVDLLKHFGWT 122 (348)
T ss_dssp HTECEEEE---TSSHHHHHHHHHHHHHTT-EEEESSGGSGGGGSTTTT----TTTEEESSB-HHHHHHHHHHHHHHTTSS
T ss_pred CCcEEEEC---CCcccccchhheeecccccceeeccccccccccchhh----ccccccccccHHHHHHHHHHhhhcCCCc
Confidence 45554443 233335677888899999999999664432111 101 11111111211 13556
Q ss_pred cEEEEecChhH----HHHHHHHHHhcCCceeEEeecCCCCCCCCCHHHHHHHhhc-CCCccEEEEEEecCCccHHHHHHH
Q 007327 169 SVGFVSKSGGM----SNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNN-IPQVKMMVVLGELGGRDEYSLVEA 243 (608)
Q Consensus 169 ~valvSQSG~l----~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~-Dp~T~~I~ly~E~g~~~~~~f~~~ 243 (608)
.|++|..+... ...+.+.+.+.+.......+.-... +.+..+++..+.+ ....++|+++.+ ..+.+.|+++
T Consensus 123 ~v~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~rvvil~~~--~~~~~~~l~~ 198 (348)
T PF01094_consen 123 RVSVVYSDDDYGNSLADSFQDLLRERGGICVAFISVVISS--DSDAEELLKKLKEIKSGARVVILCSS--PEDARQFLEA 198 (348)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHHTTCEEEEEEEEETT--TSHHHHHHHHHHHHTTTTSEEEEESB--HHHHHHHHHH
T ss_pred eeeeeccccccccccchhhhhhhcccccceeccccccccc--ccchhhhhhhhhhccccceeeeeecc--cccccccccc
Confidence 79999999988 4455556666565555443333333 5667888888877 677889999977 4567899999
Q ss_pred HHhCC-CCCCEEEEEeCC
Q 007327 244 LKQGK-VNKPVVAWVSGT 260 (608)
Q Consensus 244 ~r~a~-~~KPVvvlk~Gr 260 (608)
+.+.. .+.+.+.+-.+.
T Consensus 199 a~~~~~~~~~~~~i~~~~ 216 (348)
T PF01094_consen 199 AYELGMTSGDYVWILTDL 216 (348)
T ss_dssp HHHTTTSSTTSEEEEETT
T ss_pred hhhhhccccceeEEeecc
Confidence 87765 344444444443
No 287
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=43.36 E-value=2.5e+02 Score=31.02 Aligned_cols=210 Identities=18% Similarity=0.150 Sum_probs=104.6
Q ss_pred HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhh----c----CCCccEEEEeccChhcHH
Q 007327 22 PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACA----A----HPMADVFINFSSFRSAAA 93 (608)
Q Consensus 22 ~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~----~----~p~vDlavi~vp~~~~~~ 93 (608)
.++.|.+.|+. |..+-.+.........--+++.|.|+|.+.-+-.. + ....|+.|| +|+.....
T Consensus 25 lv~~L~~~g~~-------V~vv~T~~A~~fi~~~~l~~l~~~~V~~~~~~~~~~~~~~hi~l~~~aD~~vV-aPaTaNtl 96 (399)
T PRK05579 25 LVRRLRKAGAD-------VRVVMTEAAKKFVTPLTFQALSGNPVSTDLWDPAAEAAMGHIELAKWADLVLI-APATADLI 96 (399)
T ss_pred HHHHHHhCCCE-------EEEEECHhHHHHHhHHHHHHhhCCceEccccccccCCCcchhhcccccCEEEE-eeCCHHHH
Confidence 78888887653 44443242221111111234566777765322100 0 012688776 77654221
Q ss_pred H----------HHHHhcCCCCCEEEEecCC--CCH--HHHHHHHHHHHhCCCeEEcCCcccccccCcccccccCCcc---
Q 007327 94 S----------SMAALKQPTIRVVAIIAEG--VPE--ADTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTI--- 156 (608)
Q Consensus 94 ~----------~le~~~~~gv~~~viis~G--f~e--~~~~~l~~~a~~~g~rvlGPNc~Gi~~~~~~~l~~~~~~~--- 156 (608)
+ +...+.+.+.+.+++.+-. ..+ ..++-+ +..++.|..|++|.+ |++.-+..+.|-+ ...
T Consensus 97 aKiA~GiaDnllt~~~la~~~pvvi~Pamn~~m~~~p~~~~Nl-~~L~~~G~~ii~P~~-g~la~~~~g~gr~-~~~~~I 173 (399)
T PRK05579 97 AKLAHGIADDLLTTTLLATTAPVLVAPAMNTQMWENPATQRNL-ATLRSRGVEIIGPAS-GRLACGDVGPGRM-AEPEEI 173 (399)
T ss_pred HHHHcccCCcHHHHHHHhcCCCEEEEeCCChhHcCCHHHHHHH-HHHHHCCCEEECCCC-ccccCCCcCCCCC-CCHHHH
Confidence 1 1112222355655555321 111 134444 455678999999975 6654333122110 000
Q ss_pred ----cccccccCCCCCcEEEEec-----------------ChhHHHHHHHHHHhcCCceeEEeecCCCCCCCCCHHHHHH
Q 007327 157 ----DNIIHCKLYRPGSVGFVSK-----------------SGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHIL 215 (608)
Q Consensus 157 ----~~~~p~~~~~~G~valvSQ-----------------SG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~ 215 (608)
...+.. ..-.|...+|+- ||.+|.++...+.++|--+.. -.|+.. +.
T Consensus 174 ~~~~~~~~~~-~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~--v~~~~~---~~------ 241 (399)
T PRK05579 174 VAAAERALSP-KDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTL--VSGPVN---LP------ 241 (399)
T ss_pred HHHHHHHhhh-cccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEE--eCCCcc---cc------
Confidence 000000 113688888886 477999999999888865433 234332 11
Q ss_pred HhhcCCCccEEEEEEecCCccHHHHHHHHHhCCCCCCEEEEEeCCCcc
Q 007327 216 RFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCAR 263 (608)
Q Consensus 216 ~l~~Dp~T~~I~ly~E~g~~~~~~f~~~~r~a~~~KPVvvlk~Grs~~ 263 (608)
.|. .+. .+ .+.+..+..+++.+......+++.-+|-+.-
T Consensus 242 ----~~~-~~~--~~--dv~~~~~~~~~v~~~~~~~DilI~~Aav~d~ 280 (399)
T PRK05579 242 ----TPA-GVK--RI--DVESAQEMLDAVLAALPQADIFIMAAAVADY 280 (399)
T ss_pred ----CCC-CcE--EE--ccCCHHHHHHHHHHhcCCCCEEEEccccccc
Confidence 121 111 12 4667777777776543345788877776554
No 288
>PRK08462 biotin carboxylase; Validated
Probab=43.07 E-value=1.6e+02 Score=32.62 Aligned_cols=52 Identities=13% Similarity=0.098 Sum_probs=38.2
Q ss_pred HHHHHHHhcCCCCCEEEEecCCC-CHHHHHHHHHHHHhCCCeEEcCCcccccccCc
Q 007327 92 AASSMAALKQPTIRVVAIIAEGV-PEADTKQLIAYARSNNKVVIGPATVGGIQAGA 146 (608)
Q Consensus 92 ~~~~le~~~~~gv~~~viis~Gf-~e~~~~~l~~~a~~~g~rvlGPNc~Gi~~~~~ 146 (608)
.+.+++.|.+.++..++.. .|| +|. ..+.+.+++.|++++||+.-.+-...+
T Consensus 65 ~~~l~~~~~~~~~D~i~pg-~g~lse~--~~~a~~~e~~Gi~~~g~~~~~~~~~~d 117 (445)
T PRK08462 65 IPAIISAAEIFEADAIFPG-YGFLSEN--QNFVEICSHHNIKFIGPSVEVMALMSD 117 (445)
T ss_pred HHHHHHHHHHcCCCEEEEC-CCccccC--HHHHHHHHHCCCeEECcCHHHHHHhCC
Confidence 4688999999999877664 455 442 556678899999999998766544443
No 289
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=42.74 E-value=82 Score=32.84 Aligned_cols=101 Identities=15% Similarity=0.091 Sum_probs=61.5
Q ss_pred CcEEEEEc-CCch-HHHHHhhCc-ccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEec
Q 007327 10 TTQALFYN-YKQL-PIQRMLDFD-FLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFS 86 (608)
Q Consensus 10 ~s~avv~g-~~~~-~~~~l~~~~-~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi~v 86 (608)
+.+.++|+ ..+. ++.-+++.+ +. . ..|...+ |..+... .+ .+-+|+....+..++.. +.|+++++|
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~---~-~~I~v~~-~~~e~~~-~l--~~~~g~~~~~~~~~~~~---~advv~Lav 70 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALP---P-EEIIVTN-RSEEKRA-AL--AAEYGVVTTTDNQEAVE---EADVVFLAV 70 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCC---c-ceEEEeC-CCHHHHH-HH--HHHcCCcccCcHHHHHh---hCCEEEEEe
Confidence 56788853 2233 777788776 43 1 2354555 6443210 00 12344554666666554 479999999
Q ss_pred cChhcHHHHHHHhcC-CCCCEEEEecCCCCHHHHHHH
Q 007327 87 SFRSAAASSMAALKQ-PTIRVVAIIAEGVPEADTKQL 122 (608)
Q Consensus 87 p~~~~~~~~le~~~~-~gv~~~viis~Gf~e~~~~~l 122 (608)
.|.. ..+++..+.. ..=+.+|=+.+|.+-...++.
T Consensus 71 KPq~-~~~vl~~l~~~~~~~lvISiaAGv~~~~l~~~ 106 (266)
T COG0345 71 KPQD-LEEVLSKLKPLTKDKLVISIAAGVSIETLERL 106 (266)
T ss_pred ChHh-HHHHHHHhhcccCCCEEEEEeCCCCHHHHHHH
Confidence 9974 7888888873 344567778899987644444
No 290
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=41.98 E-value=1.3e+02 Score=32.13 Aligned_cols=36 Identities=14% Similarity=-0.024 Sum_probs=26.3
Q ss_pred CccEEEEeccChhcHHHHHHHhcCCCCCEEEEecCCCC
Q 007327 78 MADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVP 115 (608)
Q Consensus 78 ~vDlavi~vp~~~~~~~~le~~~~~gv~~~viis~Gf~ 115 (608)
++|+++.++|... .....+++.++|++ +|..|+-|.
T Consensus 73 ~~DvVf~a~p~~~-s~~~~~~~~~~G~~-VIDlsg~fR 108 (341)
T TIGR00978 73 DVDIVFSALPSEV-AEEVEPKLAEAGKP-VFSNASNHR 108 (341)
T ss_pred cCCEEEEeCCHHH-HHHHHHHHHHCCCE-EEECChhhc
Confidence 5899999999975 45566777668887 566676663
No 291
>PRK06270 homoserine dehydrogenase; Provisional
Probab=41.71 E-value=69 Score=34.38 Aligned_cols=150 Identities=14% Similarity=0.042 Sum_probs=76.4
Q ss_pred CCHHHHhhcCCCccEEEEeccChhc----HHHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCeEEcCCccccc
Q 007327 67 STVEAACAAHPMADVFINFSSFRSA----AASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVGGI 142 (608)
Q Consensus 67 ~sv~~i~~~~p~vDlavi~vp~~~~----~~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~rvlGPNc~Gi~ 142 (608)
.++.++.... ++|++|+++|.... .....+++-++|+. +|+-+-+.-....++|.+.|+++|..+.=-.+.|-.
T Consensus 79 ~d~~ell~~~-~~DvVvd~T~s~~~~~~~a~~~~~~aL~~Gkh-VVtaNK~pla~~~~eL~~~A~~~g~~~~~ea~v~~g 156 (341)
T PRK06270 79 ISGLEVIRSV-DADVVVEATPTNIETGEPALSHCRKALERGKH-VVTSNKGPLALAYKELKELAKKNGVRFRYEATVGGA 156 (341)
T ss_pred CCHHHHhhcc-CCCEEEECCcCcccccchHHHHHHHHHHCCCE-EEcCCcHHHHhhHHHHHHHHHHcCCEEEEeeeeeec
Confidence 3788877543 58999999986321 12344444447764 333222322224568999999999876522222211
Q ss_pred ccCcccccccCCcccccccccCCCCCcEEEEe--cChhHHHHHHHHHHhcCCceeEEeecCCCCCCCCCHHHHHHHhhcC
Q 007327 143 QAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVS--KSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNI 220 (608)
Q Consensus 143 ~~~~~~l~~~~~~~~~~~p~~~~~~G~valvS--QSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~D 220 (608)
.|-...+ . .....+.|.=|. -||+..+ ++....+.|..|+.++ ..+.-+-|.+.|
T Consensus 157 lPii~~l-----------~-~~l~g~~I~~I~GIlnGT~ny-Il~~m~~~g~~f~~al----------~~Aq~~G~aE~D 213 (341)
T PRK06270 157 MPIINLA-----------K-ETLAGNDIKSIKGILNGTTNY-ILTRMEEEGLSYEQAL----------AEAQELGYAEAD 213 (341)
T ss_pred hhHHHHH-----------H-hhcccCceEEEEEEEeCcHHH-HHHHHhhcCCCHHHHH----------HHHHHcCCCCCC
Confidence 2221001 0 012344554432 2555543 4444444455444322 222333456678
Q ss_pred CCccEEEEEEecCCccHHHHHHHHHhC
Q 007327 221 PQVKMMVVLGELGGRDEYSLVEALKQG 247 (608)
Q Consensus 221 p~T~~I~ly~E~g~~~~~~f~~~~r~a 247 (608)
|.-.+ + |..-.+|.+=.+|.+
T Consensus 214 P~~D~-----~-G~D~a~Kl~Ila~~~ 234 (341)
T PRK06270 214 PTYDV-----E-GIDAALKVVILANSI 234 (341)
T ss_pred CCCCC-----c-cHHHHHHHHHHHHHH
Confidence 87543 4 555566666666653
No 292
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=41.63 E-value=1.2e+02 Score=31.35 Aligned_cols=52 Identities=12% Similarity=0.078 Sum_probs=30.1
Q ss_pred cccccCCHHHHhhcCCCccEEEEeccChh-cHHHHHHHhcCCC-CCEEE-EecCCCCH
Q 007327 62 AIPVHSTVEAACAAHPMADVFINFSSFRS-AAASSMAALKQPT-IRVVA-IIAEGVPE 116 (608)
Q Consensus 62 G~~~y~sv~~i~~~~p~vDlavi~vp~~~-~~~~~le~~~~~g-v~~~v-iis~Gf~e 116 (608)
.+....+++++.. +.|+++.++|... ....+++++.+.- -+.++ ..||.++.
T Consensus 71 ~i~~~~d~~~a~~---~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~ 125 (287)
T PRK08293 71 RITLTTDLAEAVK---DADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLP 125 (287)
T ss_pred CeEEeCCHHHHhc---CCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCH
Confidence 4455677777554 4899999999652 2445555554321 12233 34666654
No 293
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=41.41 E-value=1.6e+02 Score=24.77 Aligned_cols=76 Identities=17% Similarity=0.239 Sum_probs=50.9
Q ss_pred EEecChhHHHHHHHHHHhcCCceeEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCccHHHHHHHHHhCCCCC
Q 007327 172 FVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNK 251 (608)
Q Consensus 172 lvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~T~~I~ly~E~g~~~~~~f~~~~r~a~~~K 251 (608)
+|.-+-.....+-..+.. .|+..+..+. +..++++++.+.+ ..+|++=++..-.++.++++.+|+...+.
T Consensus 3 ivd~~~~~~~~l~~~l~~--~~~~~v~~~~-------~~~~~~~~~~~~~-~d~iiid~~~~~~~~~~~~~~i~~~~~~~ 72 (112)
T PF00072_consen 3 IVDDDPEIRELLEKLLER--AGYEEVTTAS-------SGEEALELLKKHP-PDLIIIDLELPDGDGLELLEQIRQINPSI 72 (112)
T ss_dssp EEESSHHHHHHHHHHHHH--TTEEEEEEES-------SHHHHHHHHHHST-ESEEEEESSSSSSBHHHHHHHHHHHTTTS
T ss_pred EEECCHHHHHHHHHHHHh--CCCCEEEEEC-------CHHHHHHHhcccC-ceEEEEEeeeccccccccccccccccccc
Confidence 444455555555555654 4443333332 3457888887666 78888877755578999999999877788
Q ss_pred CEEEEE
Q 007327 252 PVVAWV 257 (608)
Q Consensus 252 PVvvlk 257 (608)
|||++-
T Consensus 73 ~ii~~t 78 (112)
T PF00072_consen 73 PIIVVT 78 (112)
T ss_dssp EEEEEE
T ss_pred cEEEec
Confidence 888884
No 294
>PRK06487 glycerate dehydrogenase; Provisional
Probab=41.27 E-value=1e+02 Score=32.71 Aligned_cols=101 Identities=12% Similarity=-0.027 Sum_probs=57.4
Q ss_pred CCCCcEEEEE-cCCch-HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEE
Q 007327 7 FSKTTQALFY-NYKQL-PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFIN 84 (608)
Q Consensus 7 ~~p~s~avv~-g~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi 84 (608)
+.=+++.||| |.-|+ +.+.+..+|. + |.+++ +... ++ +. -+.+++|+.+ +.|++++
T Consensus 146 l~gktvgIiG~G~IG~~vA~~l~~fgm------~-V~~~~-~~~~--------~~--~~-~~~~l~ell~---~sDiv~l 203 (317)
T PRK06487 146 LEGKTLGLLGHGELGGAVARLAEAFGM------R-VLIGQ-LPGR--------PA--RP-DRLPLDELLP---QVDALTL 203 (317)
T ss_pred cCCCEEEEECCCHHHHHHHHHHhhCCC------E-EEEEC-CCCC--------cc--cc-cccCHHHHHH---hCCEEEE
Confidence 3445888885 33354 6666665643 2 44666 4211 01 11 2458999876 4699999
Q ss_pred eccChhcHH-----HHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCe
Q 007327 85 FSSFRSAAA-----SSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKV 132 (608)
Q Consensus 85 ~vp~~~~~~-----~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~r 132 (608)
.+|-..... +.++.+. -.+++|-++-=+--+++.|.+..++..++
T Consensus 204 ~lPlt~~T~~li~~~~~~~mk---~ga~lIN~aRG~vVde~AL~~AL~~g~i~ 253 (317)
T PRK06487 204 HCPLTEHTRHLIGARELALMK---PGALLINTARGGLVDEQALADALRSGHLG 253 (317)
T ss_pred CCCCChHHhcCcCHHHHhcCC---CCeEEEECCCccccCHHHHHHHHHcCCee
Confidence 999754332 3334333 23444444422233788898888876554
No 295
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=41.27 E-value=57 Score=35.20 Aligned_cols=51 Identities=12% Similarity=0.051 Sum_probs=35.5
Q ss_pred ccccCCHHHHhhcCCCccEEEEeccChhcHHHHHHHhcCC--CCCEEEEecCCCCHH
Q 007327 63 IPVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQP--TIRVVAIIAEGVPEA 117 (608)
Q Consensus 63 ~~~y~sv~~i~~~~p~vDlavi~vp~~~~~~~~le~~~~~--gv~~~viis~Gf~e~ 117 (608)
+.+..+++++.+ +.|+.+++||... ...+++.+... .-+.+|.+|-|+-..
T Consensus 70 i~at~dl~eal~---~ADiIIlAVPs~~-i~~vl~~l~~~l~~~~~iVs~tKGie~~ 122 (342)
T TIGR03376 70 LVAVPDLVEAAK---GADILVFVIPHQF-LEGICKQLKGHVKPNARAISCIKGLEVS 122 (342)
T ss_pred eEEECCHHHHHh---cCCEEEEECChHH-HHHHHHHHHhhcCCCCEEEEEeCCcccC
Confidence 446678887765 4799999999986 77777777532 123466677898543
No 296
>KOG1447 consensus GTP-specific succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=40.86 E-value=56 Score=33.99 Aligned_cols=96 Identities=19% Similarity=0.210 Sum_probs=75.0
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhcCCceeEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCccH----HHHH
Q 007327 166 RPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDE----YSLV 241 (608)
Q Consensus 166 ~~G~valvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~T~~I~ly~E~g~~~~----~~f~ 241 (608)
..|+|+-+-...+++.+.++...-.|=-...|..+|+..- .--.....+.+-.||.+|+|++-+--|+-+= ....
T Consensus 281 mDGNIaClVNGAGLAMATmDiIkLnGGePANFLDvGGgV~-EdqV~~Af~ilTaDPkVk~iLvNiFGGIVNCAtIANGiv 359 (412)
T KOG1447|consen 281 MDGNIACLVNGAGLAMATMDIIKLNGGEPANFLDVGGGVK-EDQVYQAFKILTADPKVKAILVNIFGGIVNCATIANGIV 359 (412)
T ss_pred ccCceEEEEccchhhhheeeeEEecCCCCcceeeccCccc-HHHHHHHhhhhccCCceeEEEEehhcceehhHhHhhHHH
Confidence 5799999999999999999988878888899999998751 1123445667789999999999888455443 3456
Q ss_pred HHHHhCCCCCCEEEEEeCCCc
Q 007327 242 EALKQGKVNKPVVAWVSGTCA 262 (608)
Q Consensus 242 ~~~r~a~~~KPVvvlk~Grs~ 262 (608)
.++|+...+.|.|+---|++-
T Consensus 360 ~A~~kl~LnVPlVVRLEGTNV 380 (412)
T KOG1447|consen 360 KACRKLELNVPLVVRLEGTNV 380 (412)
T ss_pred HHHHhhcCCCcEEEEEcCCCH
Confidence 678888889999998777665
No 297
>TIGR03013 EpsB_2 sugar transferase, PEP-CTERM system associated. Members of this protein family belong to the family of bacterial sugar transferases (pfam02397). Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria (notable exceptions appear to include Magnetococcus sp. MC-1 and Myxococcus xanthus DK 1622 ). These genes are generally found near one or more of the PrsK, PrsR or PrsT genes that have been related to the PEP-CTERM system by phylogenetic profiling methods. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species. These proteins are homologs of the EpsB protien found in Methylobacillus sp. strain 12S, which is also associated with a PEP-CTERM system, but of a distinct type. A name which appears attached to a number of genes (by transitive annotation) in this family is "undecapre
Probab=40.54 E-value=90 Score=34.70 Aligned_cols=49 Identities=16% Similarity=0.053 Sum_probs=33.1
Q ss_pred eeecccccCCHHHHh---hcCCCccEEEEeccChhcH--HHHHHHhcCCCCCEEE
Q 007327 59 EEIAIPVHSTVEAAC---AAHPMADVFINFSSFRSAA--ASSMAALKQPTIRVVA 108 (608)
Q Consensus 59 ev~G~~~y~sv~~i~---~~~p~vDlavi~vp~~~~~--~~~le~~~~~gv~~~v 108 (608)
.+.|+|++.+++|+. .+. ++|-++|++|..... ...++.|...|++..+
T Consensus 165 ~i~gvpVlG~~~dl~~~v~~~-~Id~ViIAlp~~~~~~~~~~l~~~~~~gv~V~i 218 (442)
T TIGR03013 165 YVPSEHVIENGDGLVEYVLRH-RIDEIVIALDERRGSLPVDELLECKLSGIEVVD 218 (442)
T ss_pred ccCCCcccCCHHHHHHHHHhC-CCCEEEEECchhhcchHHHHHHHHHhCCCEEEE
Confidence 577899998877653 334 589999999864321 1346778777776544
No 298
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=40.43 E-value=2.4e+02 Score=29.80 Aligned_cols=85 Identities=9% Similarity=0.013 Sum_probs=55.1
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhcCCceeEEeecCCCCCCCCCHHHHHHHhhcCCCccEE-EEEEe--cCCc-cHHHHH
Q 007327 166 RPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMM-VVLGE--LGGR-DEYSLV 241 (608)
Q Consensus 166 ~~G~valvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~T~~I-~ly~E--~g~~-~~~~f~ 241 (608)
.+|.--++...|.++..+...++..|+-+.. +.+...- .++..++.+.+.++++++++ +.+.| .|.. +-+++.
T Consensus 76 ~~~~~vlv~~~~~~~~~~~~~a~~~g~~~~~-v~~~~~~--~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~i~~I~ 152 (363)
T TIGR02326 76 PKDGKLLVVINGAYGARIVQIAEYLGIPHHV-VDTGEVE--PPDVVEVEAILAADPAITHIALVHCETTTGILNPIEAVA 152 (363)
T ss_pred CCCCeEEEEeCChhhHHHHHHHHHcCCceEE-EeCCCCC--CCCHHHHHHHHhhCCCccEEEEEeecCCccccCcHHHHH
Confidence 4555555655777776655667777876644 5666554 67888888888888888754 56678 2222 345677
Q ss_pred HHHHhCCCCCCEEE
Q 007327 242 EALKQGKVNKPVVA 255 (608)
Q Consensus 242 ~~~r~a~~~KPVvv 255 (608)
+.+++ .+.++|+
T Consensus 153 ~l~~~--~g~~liv 164 (363)
T TIGR02326 153 KLAHR--HGKVTIV 164 (363)
T ss_pred HHHHH--cCCEEEE
Confidence 77775 4555554
No 299
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=40.27 E-value=1.4e+02 Score=29.56 Aligned_cols=49 Identities=14% Similarity=0.078 Sum_probs=27.8
Q ss_pred ecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCccHHHHHHHHHhCC-CCCCE
Q 007327 199 AIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGK-VNKPV 253 (608)
Q Consensus 199 s~Gn~~~~dv~~~d~l~~l~~Dp~T~~I~ly~E~g~~~~~~f~~~~r~a~-~~KPV 253 (608)
.+.+.. ......+.++|..+| +.+|... +-.......+++++.. .+|+.
T Consensus 162 ~~~~~~--~~a~~~~~~~l~~~~-~~~i~~~---~~~~~~g~~~al~~~g~~~~~~ 211 (257)
T PF13407_consen 162 YTDWDP--EDARQAIENLLQANP-VDAIIAC---NDGMALGAAQALQQAGRAGKVI 211 (257)
T ss_dssp ECTTSH--HHHHHHHHHHHHHTT-EEEEEES---SHHHHHHHHHHHHHTTCTTTSE
T ss_pred ccCCCH--HHHHHHHHHhhhcCC-ceEEEeC---CChHHHHHHHHHHHcCCcccce
Confidence 445554 555566667777776 5555332 2334456777777754 34553
No 300
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=40.17 E-value=47 Score=29.41 Aligned_cols=43 Identities=26% Similarity=0.274 Sum_probs=30.3
Q ss_pred HHHHHHHhcCCCCCEEEEecCCCCHH-HHHHHHHHHHhCCCeEEcCCc
Q 007327 92 AASSMAALKQPTIRVVAIIAEGVPEA-DTKQLIAYARSNNKVVIGPAT 138 (608)
Q Consensus 92 ~~~~le~~~~~gv~~~viis~Gf~e~-~~~~l~~~a~~~g~rvlGPNc 138 (608)
.+.+++-|.+.+|..+||= ||. +..-+.+..++.|+++.||+-
T Consensus 51 ~~~l~~~a~~~~idlvvvG----PE~pL~~Gl~D~l~~~gi~vfGP~k 94 (100)
T PF02844_consen 51 PEELADFAKENKIDLVVVG----PEAPLVAGLADALRAAGIPVFGPSK 94 (100)
T ss_dssp HHHHHHHHHHTTESEEEES----SHHHHHTTHHHHHHHTT-CEES--H
T ss_pred HHHHHHHHHHcCCCEEEEC----ChHHHHHHHHHHHHHCCCcEECcCH
Confidence 5677788888888877772 344 566688888999999999973
No 301
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=39.82 E-value=48 Score=33.80 Aligned_cols=16 Identities=31% Similarity=0.544 Sum_probs=12.9
Q ss_pred CCCCEEEEEeCCCccC
Q 007327 249 VNKPVVAWVSGTCARL 264 (608)
Q Consensus 249 ~~KPVvvlk~Grs~~g 264 (608)
..||||+..-|..-.|
T Consensus 96 ~~kPvIAav~G~a~Gg 111 (251)
T PRK06023 96 AEKPIVSGVDGLAIGI 111 (251)
T ss_pred CCCCEEEEeCCceecH
Confidence 6899999998876644
No 302
>PLN03085 nucleobase:cation symporter-1; Provisional
Probab=39.53 E-value=1.5e+02 Score=29.82 Aligned_cols=59 Identities=14% Similarity=0.193 Sum_probs=41.1
Q ss_pred HHHHHHHHHHcCC--CcCCCCCCCCCCCCC--cHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 007327 469 AYEFVESMKKKGI--RVPGIGHRIKRGDNR--DKRVELLQKFARTHFPSVKYMEYAVQVETYT 527 (608)
Q Consensus 469 ~~~~v~~~l~~~~--~ipGFGH~vy~~~~~--DPRa~~L~~~~~~~~~~~~~~~~a~~~e~~~ 527 (608)
+++-|++..++|+ .+||.|.|+-..+++ ||=-..+-.+.+..+.-.+++++-.++.+.+
T Consensus 93 aE~rI~eAm~~GeFdNLpG~GKPL~ldd~p~vp~e~r~~nRILknaG~lPpwIeL~KEI~~~i 155 (221)
T PLN03085 93 VEQRIWHSMEEGHFENLPGKGKPLNLSTNPHADPAEDTLYRILSKNGCAPEWVELNKEIRGQI 155 (221)
T ss_pred HHHHHHHHHHcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 4556677777884 899999999644322 2323456667777777789998888877665
No 303
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=39.46 E-value=55 Score=33.69 Aligned_cols=91 Identities=14% Similarity=0.067 Sum_probs=59.2
Q ss_pred HHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCeEE---------------cCCcccccccCcccccccCCcccc
Q 007327 94 SSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVI---------------GPATVGGIQAGAFKIGDTAGTIDN 158 (608)
Q Consensus 94 ~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~rvl---------------GPNc~Gi~~~~~~~l~~~~~~~~~ 158 (608)
.+.++.. .|..+++++.+-.......++.+.|++.||-.+ |+.-+||-|-+-..+ ......
T Consensus 116 QI~ea~~-~GADavLLI~~~L~~~~l~~l~~~a~~lGle~LVEVh~~~El~~a~~~ga~iiGINnRdL~t~---~vd~~~ 191 (247)
T PRK13957 116 QIREARA-FGASAILLIVRILTPSQIKSFLKHASSLGMDVLVEVHTEDEAKLALDCGAEIIGINTRDLDTF---QIHQNL 191 (247)
T ss_pred HHHHHHH-cCCCEEEeEHhhCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHhCCCCEEEEeCCCCccc---eECHHH
Confidence 4555555 899999999998887788889999999998655 888888766543111 011000
Q ss_pred cccccCCCCCcEEEEecChhHHHHHHHHHH
Q 007327 159 IIHCKLYRPGSVGFVSKSGGMSNELYNTIA 188 (608)
Q Consensus 159 ~~p~~~~~~G~valvSQSG~l~~~~~~~~~ 188 (608)
...-.+.-|..+-+||-||--+.+=+..+.
T Consensus 192 ~~~L~~~ip~~~~~IsESGI~t~~d~~~l~ 221 (247)
T PRK13957 192 VEEVAAFLPPNIVKVGESGIESRSDLDKFR 221 (247)
T ss_pred HHHHHhhCCCCcEEEEcCCCCCHHHHHHHH
Confidence 000011346778899999977665444443
No 304
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=38.77 E-value=2.7e+02 Score=29.03 Aligned_cols=85 Identities=9% Similarity=0.017 Sum_probs=49.8
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhcCCceeEEeecCCCCCCCCCHHHHHHHhhcCCCccEEE-EEEec--CCc-cHHHHH
Q 007327 166 RPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMV-VLGEL--GGR-DEYSLV 241 (608)
Q Consensus 166 ~~G~valvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~T~~I~-ly~E~--g~~-~~~~f~ 241 (608)
.+|.-.++...|..+..+...+...|+-+.. +...... .++..++.+.+.++++++.++ ...|. |.. +-+++.
T Consensus 72 ~~~~~vi~~~~~~~~~~~~~~a~~~g~~~~~-i~~~~~~--~~d~~~l~~~l~~~~~~~~v~~~~~~~~~G~~~~~~~i~ 148 (355)
T TIGR03301 72 PRDGKLLVLINGAYGERLAKICEYLGIPHTD-LNFSEYE--PPDLNRIEEALAADPDITHVATVHHETTTGILNPLEAIA 148 (355)
T ss_pred CCCCeEEEECCCchhhHHHHHHHHcCCceEE-EecCCCC--CCCHHHHHHHHHhCCCceEEEEEecCCcccchhHHHHHH
Confidence 4556667777777665444455666766544 3333333 677888888888777776664 34541 222 335566
Q ss_pred HHHHhCCCCCCEEE
Q 007327 242 EALKQGKVNKPVVA 255 (608)
Q Consensus 242 ~~~r~a~~~KPVvv 255 (608)
+.+++ .+.++|+
T Consensus 149 ~l~~~--~~~~liv 160 (355)
T TIGR03301 149 KVARS--HGAVLIV 160 (355)
T ss_pred HHHHH--cCCEEEE
Confidence 67765 3455444
No 305
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=38.70 E-value=2.8e+02 Score=30.74 Aligned_cols=158 Identities=14% Similarity=0.098 Sum_probs=84.0
Q ss_pred cChhcHHHHHHHhcCCCCCEEEEecCCCCHH---HHHHHHHHHHh----CCCeEEcCCcccccccCccccc-ccCCcccc
Q 007327 87 SFRSAAASSMAALKQPTIRVVAIIAEGVPEA---DTKQLIAYARS----NNKVVIGPATVGGIQAGAFKIG-DTAGTIDN 158 (608)
Q Consensus 87 p~~~~~~~~le~~~~~gv~~~viis~Gf~e~---~~~~l~~~a~~----~g~rvlGPNc~Gi~~~~~~~l~-~~~~~~~~ 158 (608)
-.+....++.+.+.+...+.++|+|++.+|. |.+.+.+.+++ .+++++.=+|-|+-.....+.. .+.+-+.
T Consensus 68 g~~kL~~aI~~~~~~~~P~~I~V~ttc~~~iiGdDi~~v~~~~~~~~~~~~~~vi~v~t~gF~g~~~~G~~~a~~al~~- 146 (429)
T cd03466 68 GEKNLKKGLKNVIEQYNPEVIGIATTCLSETIGEDVPRIIREFREEVDDSEPKIIPASTPGYGGTHVEGYDTAVRSIVK- 146 (429)
T ss_pred cHHHHHHHHHHHHHhcCCCEEEEeCCchHHHhhcCHHHHHHHHhhcccCCCCcEEEEECCCCcccHHHHHHHHHHHHHH-
Confidence 3344334444455545788899999999987 55555555554 4778998888887532210100 0000001
Q ss_pred cccccCCCCCcEEEEe--cChhHHHHHHHHHHhcCCceeEE-----------------eecCCCCCCCCCHHHHHHHhhc
Q 007327 159 IIHCKLYRPGSVGFVS--KSGGMSNELYNTIARVTDGIYEG-----------------IAIGGDVFPGSTLSDHILRFNN 219 (608)
Q Consensus 159 ~~p~~~~~~G~valvS--QSG~l~~~~~~~~~~~g~G~s~~-----------------vs~Gn~~~~dv~~~d~l~~l~~ 219 (608)
.+.....+++.|-++. .+.+=..++-..+..-|+-+-.+ +..| +.++.|+ .+
T Consensus 147 ~~~~~~~~~~~VNlig~~~~~~D~~ei~~lL~~~Gl~~~~~~d~s~~~~~~~~~~~~~~~~~-----g~~~~~i----~~ 217 (429)
T cd03466 147 NIAVDPDKIEKINVIAGMMSPADIREIKEILREFGIEYILLPDTSETLDGPFWGEYHRLPSG-----GTPISEI----KG 217 (429)
T ss_pred HhccCCCCCCcEEEECCCCChhHHHHHHHHHHHcCCCeEEecCccccccCCCCCCcceeCCC-----CCCHHHH----Hh
Confidence 1111123477888886 34333466777777777776321 1123 3344554 34
Q ss_pred CCCccEEEEEEecCCccHHHHHHHHHhCCCCCCEEEE
Q 007327 220 IPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAW 256 (608)
Q Consensus 220 Dp~T~~I~ly~E~g~~~~~~f~~~~r~a~~~KPVvvl 256 (608)
=++-+.-++..- ....+.++.+..++ +.+.|.+.+
T Consensus 218 ~~~A~lniv~~~-~~~~g~~~A~~L~e-~~giP~~~~ 252 (429)
T cd03466 218 MGGAKATIELGM-FVDHGLSAGSYLEE-EFGIPNYRL 252 (429)
T ss_pred hccCcEEEEEcc-CccchHHHHHHHHH-HHCCCeeec
Confidence 555555443321 11335666776665 358886654
No 306
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=38.51 E-value=1.8e+02 Score=31.60 Aligned_cols=71 Identities=11% Similarity=0.120 Sum_probs=40.3
Q ss_pred cccCCHHHHhhcCCCccEEEEeccCh----hcHHHHHHHhcCCCCCEEEEec----CC--CCHHHHHHHHHHHHhCCCeE
Q 007327 64 PVHSTVEAACAAHPMADVFINFSSFR----SAAASSMAALKQPTIRVVAIIA----EG--VPEADTKQLIAYARSNNKVV 133 (608)
Q Consensus 64 ~~y~sv~~i~~~~p~vDlavi~vp~~----~~~~~~le~~~~~gv~~~viis----~G--f~e~~~~~l~~~a~~~g~rv 133 (608)
|+|+....+.... .+++..+.+... -.++++ +++...+++.+++.+ .| ++....++|.++|+++|+.|
T Consensus 136 P~y~~~~~~~~~~-g~~~~~i~~~~~~~~~~d~~~l-~~~~~~~~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~i 213 (412)
T PTZ00433 136 PGFPHYETVCKAY-GIEMRFYNCRPEKDWEADLDEI-RRLVDDRTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPL 213 (412)
T ss_pred CCcccHHHHHHHc-CCEEEEEecCccccCcCCHHHH-HHHhccCceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeE
Confidence 4555554443333 256555544321 123444 444445788777644 24 34557889999999999876
Q ss_pred EcC
Q 007327 134 IGP 136 (608)
Q Consensus 134 lGP 136 (608)
+==
T Consensus 214 i~D 216 (412)
T PTZ00433 214 ISD 216 (412)
T ss_pred EEe
Confidence 633
No 307
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=38.39 E-value=21 Score=34.27 Aligned_cols=100 Identities=21% Similarity=0.366 Sum_probs=64.1
Q ss_pred cEEEEEEecCCccHHHHHHHHHhCC--CCCCEEEEEeCCCccCcccccccCCC-CCcCCCCcchHHHHHHHHH--HcCCc
Q 007327 224 KMMVVLGELGGRDEYSLVEALKQGK--VNKPVVAWVSGTCARLFKSEVQFGHA-GAKSGGEMESAQAKNQALR--DAGAV 298 (608)
Q Consensus 224 ~~I~ly~E~g~~~~~~f~~~~r~a~--~~KPVvvlk~Grs~~g~~~~aa~sHt-galag~~~~~a~~~~a~~~--qaGvi 298 (608)
.-|++++| ...-=+.|++++.+.+ ..+|.|.+..+.-....-...-++|. |+..+.. .....+|+ +-|.+
T Consensus 23 ~pVlI~GE-~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~----~~~~G~l~~A~~GtL 97 (168)
T PF00158_consen 23 LPVLITGE-TGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGAR----SDKKGLLEQANGGTL 97 (168)
T ss_dssp S-EEEECS-TTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTS----SEBEHHHHHTTTSEE
T ss_pred CCEEEEcC-CCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccc----cccCCceeeccceEE
Confidence 66889999 5555577888888875 46899999887654310011224442 3333333 11124554 45999
Q ss_pred ccCCHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 007327 299 VPTSYEAFESAIKETFEKLVEEGKIPPVKE 328 (608)
Q Consensus 299 ~v~~~~el~~~~~~~~~~~~~~G~~~~~~~ 328 (608)
..+++++|...++..+-++..++.+.+..+
T Consensus 98 ~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~ 127 (168)
T PF00158_consen 98 FLDEIEDLPPELQAKLLRVLEEGKFTRLGS 127 (168)
T ss_dssp EEETGGGS-HHHHHHHHHHHHHSEEECCTS
T ss_pred eecchhhhHHHHHHHHHHHHhhchhccccc
Confidence 999999999999988877888888777654
No 308
>PRK12483 threonine dehydratase; Reviewed
Probab=38.35 E-value=4.8e+02 Score=29.94 Aligned_cols=195 Identities=17% Similarity=0.191 Sum_probs=97.0
Q ss_pred EEeccChhcHHHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCC--eEEcCCcccccccCccccc-ccCCccccc
Q 007327 83 INFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNK--VVIGPATVGGIQAGAFKIG-DTAGTIDNI 159 (608)
Q Consensus 83 vi~vp~~~~~~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~--rvlGPNc~Gi~~~~~~~l~-~~~~~~~~~ 159 (608)
||+..+.-.-..+--.|...|++..|++..+.++... +..|.+|- .+.|.+.-.-+.-.. .+- ..+..|.+
T Consensus 88 VV~aSaGNha~gvA~aA~~lGi~~~IvmP~~tp~~Kv----~~~r~~GAeVil~g~~~d~a~~~A~-~la~e~g~~~v~- 161 (521)
T PRK12483 88 VITASAGNHAQGVALAAARLGVKAVIVMPRTTPQLKV----DGVRAHGGEVVLHGESFPDALAHAL-KLAEEEGLTFVP- 161 (521)
T ss_pred EEEECCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHH----HHHHHCCCEEEEECCCHHHHHHHHH-HHHHhcCCeeeC-
Confidence 4555554434566667778999999999999886543 34456664 455654322221111 110 00111211
Q ss_pred ccccCCCCCcEEEEecChhHHHHHHHHHHhcCCceeEEeecCCCCCCCCCHHHHHHHhhc-CCCccEEEEEEecCCccHH
Q 007327 160 IHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNN-IPQVKMMVVLGELGGRDEY 238 (608)
Q Consensus 160 ~p~~~~~~G~valvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~-Dp~T~~I~ly~E~g~~~~~ 238 (608)
|.. .|-.++ .| |+++.++++.+.. .+ =.-++++|+-- .++=+..|+.+ .|++|+|++--| +-..
T Consensus 162 -pfd--d~~via--Gq-gTig~EI~eQ~~~-~~-D~VvvpvGgGG----liaGia~~~K~~~p~vkVIGVep~-~a~~-- 226 (521)
T PRK12483 162 -PFD--DPDVIA--GQ-GTVAMEILRQHPG-PL-DAIFVPVGGGG----LIAGIAAYVKYVRPEIKVIGVEPD-DSNC-- 226 (521)
T ss_pred -CCC--ChHHHH--HH-HHHHHHHHHHhCC-CC-CEEEEecCccH----HHHHHHHHHHHhCCCCEEEEEEeC-CCch--
Confidence 100 111121 35 8889998876542 11 13566677653 22233334332 699999999888 4432
Q ss_pred HHHHHHHhCCCCCCEEEEEeCCCccCcccccccCCCCCcCCCCcchHHHHHHHHHHcCCcccCCHHHHHHHHHHHHH
Q 007327 239 SLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFE 315 (608)
Q Consensus 239 ~f~~~~r~a~~~KPVvvlk~Grs~~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaGvi~v~~~~el~~~~~~~~~ 315 (608)
+.... ..+||+..=..+.-..| .+.. ..| . ..|+.+-+-.+=+..=+-+|+.+..+.++.
T Consensus 227 -~~~sl---~~g~~~~~~~~~t~adG----iav~----~~g-~----~~~~~~~~~vd~vv~Vse~ei~~ai~~l~~ 286 (521)
T PRK12483 227 -LQAAL---AAGERVVLGQVGLFADG----VAVA----QIG-E----HTFELCRHYVDEVVTVSTDELCAAIKDIYD 286 (521)
T ss_pred -hhHHH---hcCCcccCCCCCceece----eccC----CCC-H----HHHHHHHHhCCEEEEECHHHHHHHHHHHHH
Confidence 22222 24677644222222222 1111 111 1 455444333444555556677777777665
No 309
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=38.21 E-value=99 Score=35.00 Aligned_cols=96 Identities=16% Similarity=0.041 Sum_probs=50.5
Q ss_pred CcEEEEE-cCCch-HHHHHhhCcccCCCCCCcEEEEeCCCCCC--ccccc-----------cCc--eeec-ccccCCHHH
Q 007327 10 TTQALFY-NYKQL-PIQRMLDFDFLCGRETPSVAGIINPGAEG--FQKLF-----------FGQ--EEIA-IPVHSTVEA 71 (608)
Q Consensus 10 ~s~avv~-g~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p~~~~--~~~~~-----------~g~--ev~G-~~~y~sv~~ 71 (608)
++|+||| |..|. +..++++.||. |...+ +.... ..... .+. ...| +....++++
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~-------V~v~D-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~e 76 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGID-------VAVFD-PHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAE 76 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCe-------EEEEe-CCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHH
Confidence 4789996 33344 78888888764 44455 42211 00000 000 0123 556677777
Q ss_pred HhhcCCCccEEEEeccChhcHH-HHHHHhcC---CCCCEEEEecCCCCHH
Q 007327 72 ACAAHPMADVFINFSSFRSAAA-SSMAALKQ---PTIRVVAIIAEGVPEA 117 (608)
Q Consensus 72 i~~~~p~vDlavi~vp~~~~~~-~~le~~~~---~gv~~~viis~Gf~e~ 117 (608)
+.. +.|+++.+||....+. .+++.+.+ .++ .+...|+|++.+
T Consensus 77 a~~---~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~-iI~SsTsgi~~s 122 (495)
T PRK07531 77 AVA---GADWIQESVPERLDLKRRVLAEIDAAARPDA-LIGSSTSGFLPS 122 (495)
T ss_pred Hhc---CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCc-EEEEcCCCCCHH
Confidence 654 4899999999875332 34343332 221 233345688754
No 310
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=38.15 E-value=53 Score=27.97 Aligned_cols=55 Identities=16% Similarity=0.184 Sum_probs=31.9
Q ss_pred cEEEEeccChhcHHHHHHHhcCCCCCEEEEecCC--CCHHHHHHHHHHHHhCCCeEEc
Q 007327 80 DVFINFSSFRSAAASSMAALKQPTIRVVAIIAEG--VPEADTKQLIAYARSNNKVVIG 135 (608)
Q Consensus 80 Dlavi~vp~~~~~~~~le~~~~~gv~~~viis~G--f~e~~~~~l~~~a~~~g~rvlG 135 (608)
|..||=.|+.. -+..+.-+....+..+|++|.- .+-.+.++-.+.+++.+++++|
T Consensus 2 D~LiiD~PPGT-gD~~l~~~~~~~~~g~ivVTTPq~la~~dv~r~~~~~~~~~vpilG 58 (81)
T PF10609_consen 2 DYLIIDLPPGT-GDEHLTLMQYLPIDGAIVVTTPQELALADVRRAIDMFRKLNVPILG 58 (81)
T ss_dssp CEEEEE--SCS-SSHHHHHHHHH--SEEEEEE-CCC--HHHHHHHHHHHHCTT-EEEE
T ss_pred CEEEEeCCCCC-CcHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHHHhcCCCcEE
Confidence 56666677742 3333443433347777887763 4445788889999999999987
No 311
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=38.07 E-value=45 Score=36.12 Aligned_cols=65 Identities=12% Similarity=0.041 Sum_probs=45.1
Q ss_pred ccccCCHHHHhhcCCCccEEEEeccChhcHHHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCeEE
Q 007327 63 IPVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVI 134 (608)
Q Consensus 63 ~~~y~sv~~i~~~~p~vDlavi~vp~~~~~~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~rvl 134 (608)
+.-..++.++.. +.|++|.++|+.. -..++++|.+.|+..+= ..+-...+.++-+.|++.|+.++
T Consensus 55 ~~~~~~l~~~~~---~~dvVin~~gp~~-~~~v~~~~i~~g~~yvD---~~~~~~~~~~l~~~a~~~g~~~l 119 (386)
T PF03435_consen 55 VNDPESLAELLR---GCDVVINCAGPFF-GEPVARACIEAGVHYVD---TSYVTEEMLALDEEAKEAGVTAL 119 (386)
T ss_dssp TTTHHHHHHHHT---TSSEEEE-SSGGG-HHHHHHHHHHHT-EEEE---SS-HHHHHHHCHHHHHHTTSEEE
T ss_pred cCCHHHHHHHHh---cCCEEEECCccch-hHHHHHHHHHhCCCeec---cchhHHHHHHHHHHHHhhCCEEE
Confidence 333445666655 4699999999874 67899999999998665 33334467788889999998754
No 312
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=37.72 E-value=2e+02 Score=27.30 Aligned_cols=101 Identities=15% Similarity=0.169 Sum_probs=59.0
Q ss_pred HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEeccCh-hcHHHHHHHhc
Q 007327 22 PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFR-SAAASSMAALK 100 (608)
Q Consensus 22 ~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi~vp~~-~~~~~~le~~~ 100 (608)
.++.+++. |..+.....|+.+.|-... ...+.+.-|.+.+++... ++-. -..... .....+++.+.
T Consensus 24 fi~~lv~~-f~i~~~~~rVgvv~ys~~~--------~~~~~l~~~~~~~~l~~~---i~~i-~~~~g~~t~t~~AL~~~~ 90 (165)
T cd01481 24 FIERIVQS-LDVGPDKIRVAVVQFSDTP--------RPEFYLNTHSTKADVLGA---VRRL-RLRGGSQLNTGSALDYVV 90 (165)
T ss_pred HHHHHHhh-ccCCCCCcEEEEEEecCCe--------eEEEeccccCCHHHHHHH---HHhc-ccCCCCcccHHHHHHHHH
Confidence 44555542 3333334578778775443 356677888888887653 3421 122221 12444555432
Q ss_pred C------------CCCC-EEEEecCCCCHHHHHHHHHHHHhCCCeEEc
Q 007327 101 Q------------PTIR-VVAIIAEGVPEADTKQLIAYARSNNKVVIG 135 (608)
Q Consensus 101 ~------------~gv~-~~viis~Gf~e~~~~~l~~~a~~~g~rvlG 135 (608)
+ .|++ .+|++|.|.+..+-.+-.+.+|+.|+.+++
T Consensus 91 ~~~f~~~~g~R~~~~~~kv~vviTdG~s~d~~~~~a~~lr~~gv~i~~ 138 (165)
T cd01481 91 KNLFTKSAGSRIEEGVPQFLVLITGGKSQDDVERPAVALKRAGIVPFA 138 (165)
T ss_pred HhhcCccccCCccCCCCeEEEEEeCCCCcchHHHHHHHHHHCCcEEEE
Confidence 1 2454 677899999876555666778889998766
No 313
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=37.58 E-value=22 Score=37.67 Aligned_cols=130 Identities=21% Similarity=0.224 Sum_probs=62.3
Q ss_pred cccccCceeecccccCCHHHHhhcCCCccEEEEeccChhc------HHHHHHHhcCCCCCEEEEecCCCCHH--HHHHHH
Q 007327 52 QKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRSA------AASSMAALKQPTIRVVAIIAEGVPEA--DTKQLI 123 (608)
Q Consensus 52 ~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~------~~~~le~~~~~gv~~~viis~Gf~e~--~~~~l~ 123 (608)
.+++.+.. .|+|.|.|++++ .. .+|..||-+.+..- .+.+.+++. +|.. |+ +|+-+. +-.++.
T Consensus 10 a~e~~~~~-~~iPi~~~~~~a-~~--~~~~liiGiA~~GG~lp~~w~~~i~~Ai~-~Gl~---Iv-sGLH~~L~ddpel~ 80 (301)
T PF07755_consen 10 AGEVLGGK-RGIPIVASLEEA-AA--GADTLIIGIAPAGGRLPPSWRPVILEAIE-AGLD---IV-SGLHDFLSDDPELA 80 (301)
T ss_dssp HHHCCSSS-S--BEESSHHHH-HC--T-SEEEE---STTHCCHCCHHHHHHHHHH-TT-E---EE-E-SSS-HCCHHHHH
T ss_pred HHHhcCCC-CCCCccCCHHHH-hc--CCCEEEEecCcCCCcCCHHHHHHHHHHHH-cCCC---EE-ecChhhhccCHHHH
Confidence 33444434 899999999998 32 47999987755321 245666665 7776 22 344444 558999
Q ss_pred HHHHhCCCeEEcCCcccccccCcccccccCCcccccccccCCCCCcEEEEecC---hhHHH--HHHHHHHhcCCceeEEe
Q 007327 124 AYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKS---GGMSN--ELYNTIARVTDGIYEGI 198 (608)
Q Consensus 124 ~~a~~~g~rvlGPNc~Gi~~~~~~~l~~~~~~~~~~~p~~~~~~G~valvSQS---G~l~~--~~~~~~~~~g~G~s~~v 198 (608)
+.|+++|.++.=-... +....+ ++. .. .....=.|.++..+ |=+.+ ++...++++|+- +.|+
T Consensus 81 ~~A~~~g~~i~DvR~p----~~~~~~------~~g-~~-~~~~~~rv~~vGTDcavGK~tTal~L~~~l~~~G~~-a~fv 147 (301)
T PF07755_consen 81 AAAKKNGVRIIDVRKP----PKDLPV------ASG-RI-REVKAKRVLTVGTDCAVGKMTTALELRRALRERGIN-AGFV 147 (301)
T ss_dssp CCHHCCT--EEETTS------SS-----------S-GG-GG-SSEEEEEEESSSSSSHHHHHHHHHHHHHHTT---EEEE
T ss_pred HHHHHcCCeEeeccCC----Cccccc------ccC-cc-ccCCCCEEEEEccCccccHHHHHHHHHHHHHHcCCC-ceEE
Confidence 9999999877643321 000011 000 00 11123346666544 43433 345667778876 4456
Q ss_pred ecCCC
Q 007327 199 AIGGD 203 (608)
Q Consensus 199 s~Gn~ 203 (608)
.||-.
T Consensus 148 aTGQT 152 (301)
T PF07755_consen 148 ATGQT 152 (301)
T ss_dssp E-SHH
T ss_pred ecCCc
Confidence 66653
No 314
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=37.57 E-value=1.9e+02 Score=31.23 Aligned_cols=63 Identities=14% Similarity=0.062 Sum_probs=38.0
Q ss_pred ecccccCCHHHHhhcCCCccEEEEeccChhcHHHHHHHhcCC-CCCEEEEecCCCCHHHH-HHHHHHH
Q 007327 61 IAIPVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQP-TIRVVAIIAEGVPEADT-KQLIAYA 126 (608)
Q Consensus 61 ~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~~~~le~~~~~-gv~~~viis~Gf~e~~~-~~l~~~a 126 (608)
.|+.+..+..++.. +.|++|+++|....+.++++.+... .-+.+||-++..+.... +.+.+..
T Consensus 67 ~Gi~~asd~~eaa~---~ADvVIlaVP~~~~v~~Vl~~L~~~L~~g~IVId~ST~~~~~~s~~l~~~l 131 (342)
T PRK12557 67 AGVKVVSDDAEAAK---HGEIHILFTPFGKKTVEIAKNILPHLPENAVICNTCTVSPVVLYYSLEGEL 131 (342)
T ss_pred CCCEEeCCHHHHHh---CCCEEEEECCCcHHHHHHHHHHHhhCCCCCEEEEecCCCHHHHHHHHHHHh
Confidence 46777778777654 4799999999876466777655432 12335555555554432 4444443
No 315
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=37.47 E-value=90 Score=32.21 Aligned_cols=51 Identities=12% Similarity=0.119 Sum_probs=28.9
Q ss_pred cccccCCHHHHhhcCCCccEEEEeccChhcH-HHHHHHhcCCCCC--EEE-EecCCCCHH
Q 007327 62 AIPVHSTVEAACAAHPMADVFINFSSFRSAA-ASSMAALKQPTIR--VVA-IIAEGVPEA 117 (608)
Q Consensus 62 G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~-~~~le~~~~~gv~--~~v-iis~Gf~e~ 117 (608)
++....+.+++ . +.|+++++||....+ ..+++++.+ .++ .++ -.|+|++.+
T Consensus 70 ~l~~~~~~~~~-~---~aDlVi~av~e~~~~k~~~~~~l~~-~~~~~~il~s~ts~~~~~ 124 (282)
T PRK05808 70 RITGTTDLDDL-K---DADLVIEAATENMDLKKKIFAQLDE-IAKPEAILATNTSSLSIT 124 (282)
T ss_pred CeEEeCCHHHh-c---cCCeeeecccccHHHHHHHHHHHHh-hCCCCcEEEECCCCCCHH
Confidence 34445555553 3 489999999874322 366666653 222 233 335677654
No 316
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=36.61 E-value=90 Score=31.72 Aligned_cols=53 Identities=23% Similarity=0.193 Sum_probs=36.9
Q ss_pred ccccCCHHHHhhcCCCccEEEEeccChhcHHHHHHHhcC--CCCCEEEEecCCCCHHHH
Q 007327 63 IPVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQ--PTIRVVAIIAEGVPEADT 119 (608)
Q Consensus 63 ~~~y~sv~~i~~~~p~vDlavi~vp~~~~~~~~le~~~~--~gv~~~viis~Gf~e~~~ 119 (608)
+..+.+..++.. +.|++|++|++.. +.++++++.. .+=+.+|-+++|++-...
T Consensus 31 ~~~~~~~~e~~~---~aDiIiLaVkP~~-i~~vl~~l~~~~~~~~~ivS~~agi~~~~l 85 (245)
T TIGR00112 31 IVASSDAQEAVK---EADVVFLAVKPQD-LEEVLSELKSEKGKDKLLISIAAGVTLEKL 85 (245)
T ss_pred cEEeCChHHHHh---hCCEEEEEeCHHH-HHHHHHHHhhhccCCCEEEEecCCCCHHHH
Confidence 444556667654 3799999999764 8888888762 223567778899986433
No 317
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=36.35 E-value=1.2e+02 Score=33.27 Aligned_cols=79 Identities=18% Similarity=0.184 Sum_probs=60.3
Q ss_pred CCCCcEEEEecChhHHHHHHHHHHhcCCceeEEeecCCCCCCCCCHHHHHHHhhcCCCccEE-EEEEec--CCcc-HHHH
Q 007327 165 YRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMM-VVLGEL--GGRD-EYSL 240 (608)
Q Consensus 165 ~~~G~valvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~T~~I-~ly~E~--g~~~-~~~f 240 (608)
.+||.-.++...|.+|.-+.+++++.|.-....-.--++ .++..|+-+.|..||+.+++ +.+.|- |+.+ -++.
T Consensus 77 ~~pgdkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~~wg~---~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnpl~~I 153 (383)
T COG0075 77 VEPGDKVLVVVNGKFGERFAEIAERYGAEVVVLEVEWGE---AVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNPLKEI 153 (383)
T ss_pred cCCCCeEEEEeCChHHHHHHHHHHHhCCceEEEeCCCCC---CCCHHHHHHHHhcCCCccEEEEEeccCcccccCcHHHH
Confidence 478999999999999999999999999887776655555 58899999999999998655 678881 1223 2445
Q ss_pred HHHHHh
Q 007327 241 VEALKQ 246 (608)
Q Consensus 241 ~~~~r~ 246 (608)
.+++|+
T Consensus 154 ~~~~k~ 159 (383)
T COG0075 154 AKAAKE 159 (383)
T ss_pred HHHHHH
Confidence 555554
No 318
>PRK12435 ferrochelatase; Provisional
Probab=36.34 E-value=65 Score=34.29 Aligned_cols=48 Identities=6% Similarity=-0.020 Sum_probs=36.2
Q ss_pred HHHHHHHhcCC-CCCEEEEecCCCCH----H---HHHHHHHHHHhCCCeEEcCCcc
Q 007327 92 AASSMAALKQP-TIRVVAIIAEGVPE----A---DTKQLIAYARSNNKVVIGPATV 139 (608)
Q Consensus 92 ~~~~le~~~~~-gv~~~viis~Gf~e----~---~~~~l~~~a~~~g~rvlGPNc~ 139 (608)
+.+.++++.+. |+|.++|++=||-- + ...+.++.+++.|+.+.=+.|+
T Consensus 234 t~d~l~~l~~~~G~k~v~vvpigFvsDhlETl~Eldie~~e~a~~~G~~~~r~~~l 289 (311)
T PRK12435 234 VQDLTRDLYEEHGYKSFIYTPVGFVAEHLEVLYDNDYECKVVTDEIGAKYYRPEMP 289 (311)
T ss_pred HHHHHHHHHHhcCCceEEEECCchhhhhHHHHHHHHHHHHHHHHHcCCcEEeccCC
Confidence 46788887766 99999999999953 3 2356678899999876666664
No 319
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=36.31 E-value=51 Score=34.65 Aligned_cols=44 Identities=16% Similarity=0.039 Sum_probs=25.0
Q ss_pred cccCCHHHHhhcCCCccEEEEeccChh-cHHHHHHHhcCCCCCEEEEe
Q 007327 64 PVHSTVEAACAAHPMADVFINFSSFRS-AAASSMAALKQPTIRVVAII 110 (608)
Q Consensus 64 ~~y~sv~~i~~~~p~vDlavi~vp~~~-~~~~~le~~~~~gv~~~vii 110 (608)
....+++++.. +.|+++.++|... ....+++++.+..-+.+++.
T Consensus 71 ~~~~~~~~a~~---~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ 115 (308)
T PRK06129 71 RVTDSLADAVA---DADYVQESAPENLELKRALFAELDALAPPHAILA 115 (308)
T ss_pred EEECcHHHhhC---CCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEE
Confidence 45567776544 4799999998752 23445555543323334443
No 320
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=36.08 E-value=65 Score=33.03 Aligned_cols=55 Identities=5% Similarity=-0.002 Sum_probs=33.6
Q ss_pred CccEEEEeccChhcHHHHHHHhcC-CCCCEEEEecCCCCHHHHHHHHHHHHhCCCeEE
Q 007327 78 MADVFINFSSFRSAAASSMAALKQ-PTIRVVAIIAEGVPEADTKQLIAYARSNNKVVI 134 (608)
Q Consensus 78 ~vDlavi~vp~~~~~~~~le~~~~-~gv~~~viis~Gf~e~~~~~l~~~a~~~g~rvl 134 (608)
+.|++|+|||... ...++++... .+-..+|+=.+++...-.+.+.+... .+.+++
T Consensus 45 ~~DlvvlavP~~~-~~~~l~~~~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~-~~~~~v 100 (258)
T PF02153_consen 45 DADLVVLAVPVSA-IEDVLEEIAPYLKPGAIVTDVGSVKAPIVEAMERLLP-EGVRFV 100 (258)
T ss_dssp CCSEEEE-S-HHH-HHHHHHHHHCGS-TTSEEEE--S-CHHHHHHHHHHHT-SSGEEE
T ss_pred CCCEEEEcCCHHH-HHHHHHHhhhhcCCCcEEEEeCCCCHHHHHHHHHhcC-ccccee
Confidence 4799999999986 7788888875 44556666677887765556655544 344444
No 321
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=35.69 E-value=87 Score=34.56 Aligned_cols=51 Identities=10% Similarity=0.044 Sum_probs=42.1
Q ss_pred ccccCCHHHHhhcCCCccEEEEeccChhcHHHHHHHhcC---CCCCEEEEecCCCCHH
Q 007327 63 IPVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQ---PTIRVVAIIAEGVPEA 117 (608)
Q Consensus 63 ~~~y~sv~~i~~~~p~vDlavi~vp~~~~~~~~le~~~~---~gv~~~viis~Gf~e~ 117 (608)
-.+|..++++.. +-|..|++||+++ .-++++++.. +++|.+|++|..|+-.
T Consensus 71 d~~~~~~~~i~g---~WdtlILavtaDA-Y~~VL~ql~~~~L~~vk~iVLvSPtfGS~ 124 (429)
T PF10100_consen 71 DHVFQDYEEIEG---EWDTLILAVTADA-YLDVLQQLPWEVLKRVKSIVLVSPTFGSH 124 (429)
T ss_pred hHhhcCHHHhcc---cccEEEEEechHH-HHHHHHhcCHHHHhhCCEEEEECcccchH
Confidence 357889998754 5799999999985 7888887653 6899999999999875
No 322
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=35.57 E-value=1.3e+02 Score=29.91 Aligned_cols=43 Identities=16% Similarity=0.181 Sum_probs=27.7
Q ss_pred CHHHHhhcCCCccEEEEeccChhcHHHHHHHhcC--CCCCEEEEecCCCC
Q 007327 68 TVEAACAAHPMADVFINFSSFRSAAASSMAALKQ--PTIRVVAIIAEGVP 115 (608)
Q Consensus 68 sv~~i~~~~p~vDlavi~vp~~~~~~~~le~~~~--~gv~~~viis~Gf~ 115 (608)
+..++.. +.|++|++||+.. ...+++.+.. .+ +.+|-++.|+.
T Consensus 61 ~~~ea~~---~aDvVilavp~~~-~~~~l~~l~~~l~~-~vvI~~~ngi~ 105 (219)
T TIGR01915 61 DNAEAAK---RADVVILAVPWDH-VLKTLESLRDELSG-KLVISPVVPLA 105 (219)
T ss_pred ChHHHHh---cCCEEEEECCHHH-HHHHHHHHHHhccC-CEEEEeccCce
Confidence 4455444 4799999999986 6677776642 23 44555566764
No 323
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=35.56 E-value=1.1e+02 Score=32.22 Aligned_cols=114 Identities=11% Similarity=0.137 Sum_probs=57.5
Q ss_pred CCCCcEEEEE-cCCch-HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccc--cCCHHHHhhcCCCccEE
Q 007327 7 FSKTTQALFY-NYKQL-PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPV--HSTVEAACAAHPMADVF 82 (608)
Q Consensus 7 ~~p~s~avv~-g~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~--y~sv~~i~~~~p~vDla 82 (608)
+.++.+.|+| |..|+ +++.+...|. .|..++ .... ..+.. +-.|.+. |.++.+... +.|++
T Consensus 150 l~g~kvlViG~G~iG~~~a~~L~~~Ga-------~V~v~~-r~~~-~~~~~---~~~G~~~~~~~~l~~~l~---~aDiV 214 (296)
T PRK08306 150 IHGSNVLVLGFGRTGMTLARTLKALGA-------NVTVGA-RKSA-HLARI---TEMGLSPFHLSELAEEVG---KIDII 214 (296)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC-------EEEEEE-CCHH-HHHHH---HHcCCeeecHHHHHHHhC---CCCEE
Confidence 4566777774 22333 6677777653 344554 3211 00000 1123332 334555443 58999
Q ss_pred EEeccChhcHHHHHHHhcCCCCCEEEE-ecCCCCHHHHHHHHHHHHhCCCeEEc-CCccccc
Q 007327 83 INFSSFRSAAASSMAALKQPTIRVVAI-IAEGVPEADTKQLIAYARSNNKVVIG-PATVGGI 142 (608)
Q Consensus 83 vi~vp~~~~~~~~le~~~~~gv~~~vi-is~Gf~e~~~~~l~~~a~~~g~rvlG-PNc~Gi~ 142 (608)
|.++|........++.+. +| .+|| +++.-...+ + +.++++|++++| ||-.|.+
T Consensus 215 I~t~p~~~i~~~~l~~~~-~g--~vIIDla~~pggtd---~-~~a~~~Gv~~~~~~~lpg~v 269 (296)
T PRK08306 215 FNTIPALVLTKEVLSKMP-PE--ALIIDLASKPGGTD---F-EYAEKRGIKALLAPGLPGKV 269 (296)
T ss_pred EECCChhhhhHHHHHcCC-CC--cEEEEEccCCCCcC---e-eehhhCCeEEEEECCCCccC
Confidence 999987643344444444 33 3333 444322222 2 467889999888 4444444
No 324
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=35.45 E-value=3.3e+02 Score=30.06 Aligned_cols=159 Identities=16% Similarity=0.171 Sum_probs=88.7
Q ss_pred EeccChhcHHHHHHHhcCCCCCEEEEecCCCCHH---HHHHHHHHHHhC-----CCeEEcCCcccccccCcccccc-cCC
Q 007327 84 NFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEA---DTKQLIAYARSN-----NKVVIGPATVGGIQAGAFKIGD-TAG 154 (608)
Q Consensus 84 i~vp~~~~~~~~le~~~~~gv~~~viis~Gf~e~---~~~~l~~~a~~~-----g~rvlGPNc~Gi~~~~~~~l~~-~~~ 154 (608)
|+=-.+.....+.+...+..-+.+.|+|+..+|. |.+.+.+.+++. +++++.-||.|+......+... +.+
T Consensus 62 VfGg~~~L~~~i~~~~~~~~p~~I~V~ttc~~eiIGdDi~~v~~~~~~~~p~~~~~~vi~v~t~gf~g~~~~G~~~a~~a 141 (417)
T cd01966 62 ILGGGENLEEALDTLAERAKPKVIGLLSTGLTETRGEDIAGALKQFRAEHPELADVPVVYVSTPDFEGSLEDGWAAAVEA 141 (417)
T ss_pred EECCHHHHHHHHHHHHHhcCCCEEEEECCCcccccccCHHHHHHHHHhhccccCCCeEEEecCCCCCCcHHHHHHHHHHH
Confidence 3344444334444444455789999999999997 666666666655 8999999999987432211100 000
Q ss_pred ccccccccc---CCCCCcEEEEe---cChhHHHHHHHHHHhcCCceeEE-----------------eecCCCCCCCCCHH
Q 007327 155 TIDNIIHCK---LYRPGSVGFVS---KSGGMSNELYNTIARVTDGIYEG-----------------IAIGGDVFPGSTLS 211 (608)
Q Consensus 155 ~~~~~~p~~---~~~~G~valvS---QSG~l~~~~~~~~~~~g~G~s~~-----------------vs~Gn~~~~dv~~~ 211 (608)
-.....+.. ...++.|-|+. .+.+=..++-..+.+.|+-...+ +.+|+ .++.
T Consensus 142 l~~~l~~~~~~~~~~~~~VNiig~~~~~~~D~~eik~lL~~~Gl~v~~l~d~s~~~d~~~~~~~~~~~~gg-----t~le 216 (417)
T cd01966 142 IIEALVEPGSRTVTDPRQVNLLPGAHLTPGDVEELKDIIEAFGLEPIILPDLSGSLDGHLADDWSPTTTGG-----TTLE 216 (417)
T ss_pred HHHHhcccccccCCCCCcEEEECCCCCCHHHHHHHHHHHHHcCCceEEecCcccccCCCCCCCccccCCCC-----CcHH
Confidence 000111111 13578899995 33333456777777666665332 12233 3455
Q ss_pred HHHHHhhcCCCccEEEEEEecCCccHHHHHHHHHhCCCCCCEEEE
Q 007327 212 DHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAW 256 (608)
Q Consensus 212 d~l~~l~~Dp~T~~I~ly~E~g~~~~~~f~~~~r~a~~~KPVvvl 256 (608)
|+- +=++-++-++.-+ . ...+.+.+++ +.+.|-+.+
T Consensus 217 ei~----~~~~A~lniv~~~-~---~~~~a~~Lee-~~GiP~~~~ 252 (417)
T cd01966 217 DIR----QMGRSAATLAIGE-S---MRKAAEALEE-RTGVPYYVF 252 (417)
T ss_pred HHH----hhccCeEEEEECH-H---HHHHHHHHHH-HHCCCeeec
Confidence 544 4555555555433 2 3466666665 367887754
No 325
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=35.40 E-value=8e+02 Score=28.85 Aligned_cols=173 Identities=13% Similarity=0.109 Sum_probs=98.1
Q ss_pred eecccccCCHHHHhhcCCCccEEEEeccChhcHHHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHh-CCCeEEc---
Q 007327 60 EIAIPVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARS-NNKVVIG--- 135 (608)
Q Consensus 60 v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~-~g~rvlG--- 135 (608)
-.|+.+..+++++++. + .+.++++.+.+++.+.+.++|++.+ =-|.-|=-..+..+.+++++ +-+-++|
T Consensus 51 ~~Gv~~v~~~~~~~~~----~--~vii~aHG~~~~~~~~~~~~~~~vi-DaTCP~V~k~~~~~~~~~~~g~~ivi~G~~~ 123 (647)
T PRK00087 51 KKGIKPIEDIDELNEG----D--TIIIRSHGVPPEVLEELKDKGLKVI-DATCPFVKNIQKLAKKYYEEGYQIVIVGDKN 123 (647)
T ss_pred HCCCEEeCCHhhCCCC----C--EEEEeCCCCCHHHHHHHHHCCCeEE-ECCCcCchHHHHHHHHHHhCCCEEEEEeCCC
Confidence 3688888888886431 3 4447888888999999998888732 22444444577777777776 3577889
Q ss_pred -CCcccccccCcccccccCCcccccccccCCCCCcEEEEecChhH---HHHHHHHHHhcCCceeEEeecCCCCCCCCCHH
Q 007327 136 -PATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGM---SNELYNTIARVTDGIYEGIAIGGDVFPGSTLS 211 (608)
Q Consensus 136 -PNc~Gi~~~~~~~l~~~~~~~~~~~p~~~~~~G~valvSQSG~l---~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~ 211 (608)
|...|+........ .+..+... .. ....+.+++++||.--- ...+.+.+.++.-.+.. ..+=-.+ -.+=.
T Consensus 124 HpEv~g~~g~~~~~~-~vv~~~~~-~~-~~~~~~~~~~~~QTT~~~~~~~~~~~~l~~~~~~~~~-~~tiC~a--t~~Rq 197 (647)
T PRK00087 124 HPEVIGINGWCNNSA-IIVEDGEE-AE-KLPFDKKICVVSQTTEKQENFEKVLKELKKKGKEVKV-FNTICNA--TEVRQ 197 (647)
T ss_pred CCeeeeeccccCCCE-EEECCHHH-Hh-hCCCCCCEEEEEcCCCcHHHHHHHHHHHHHhCCCccc-CCCcchh--hhhHH
Confidence 66667664432000 00001000 00 11135789999997544 33466666665433311 1111111 12222
Q ss_pred HHHHHhhcCCCccEEEEEEecCCccHHHHHHHHHhC
Q 007327 212 DHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQG 247 (608)
Q Consensus 212 d~l~~l~~Dp~T~~I~ly~E~g~~~~~~f~~~~r~a 247 (608)
+.+.-|+ .++.++++.+-....|.+++++.+++.
T Consensus 198 ~a~~~la--~~~d~~~vvGg~~SsNt~~L~~i~~~~ 231 (647)
T PRK00087 198 EAAEKLA--KKVDVMIVVGGKNSSNTTKLYEICKSN 231 (647)
T ss_pred HHHHHHH--hhCCEEEEECCCCCccHHHHHHHHHHH
Confidence 3344444 367777777432345789999999873
No 326
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=35.25 E-value=2e+02 Score=28.73 Aligned_cols=109 Identities=14% Similarity=0.101 Sum_probs=73.6
Q ss_pred HHHHHHHHhcCCceeEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCccHHHHHH-------HHHhCCCCCCE
Q 007327 181 NELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVE-------ALKQGKVNKPV 253 (608)
Q Consensus 181 ~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~T~~I~ly~E~g~~~~~~f~~-------~~r~a~~~KPV 253 (608)
..+...++++|+-+...+--|... |.++++.+ .---++++-+|||+. |.+|++ ++|+ +..++.
T Consensus 102 ~~lv~~ir~~Gmk~G~alkPgT~V-------e~~~~~~~-~~D~vLvMtVePGFG-GQkFme~mm~KV~~lR~-kyp~l~ 171 (224)
T KOG3111|consen 102 AELVEKIREKGMKVGLALKPGTPV-------EDLEPLAE-HVDMVLVMTVEPGFG-GQKFMEDMMPKVEWLRE-KYPNLD 171 (224)
T ss_pred HHHHHHHHHcCCeeeEEeCCCCcH-------HHHHHhhc-cccEEEEEEecCCCc-hhhhHHHHHHHHHHHHH-hCCCce
Confidence 567788999999999988888776 66666666 222477889997665 678876 3342 356777
Q ss_pred EEEEeCCCccCcccccccCCCCCcCCCCcchHHHHHHHHHHcCCcccCCHHHHHHHHHHHH
Q 007327 254 VAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETF 314 (608)
Q Consensus 254 vvlk~Grs~~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaGvi~v~~~~el~~~~~~~~ 314 (608)
|=.-.|-+..- -|..+-||.+ .+..-.++.++.|+.+.+...+.-.
T Consensus 172 ievDGGv~~~t-------i~~~a~AGAN--------~iVaGsavf~a~d~~~vi~~lr~~v 217 (224)
T KOG3111|consen 172 IEVDGGVGPST-------IDKAAEAGAN--------MIVAGSAVFGAADPSDVISLLRNSV 217 (224)
T ss_pred EEecCCcCcch-------HHHHHHcCCC--------EEEecceeecCCCHHHHHHHHHHHH
Confidence 77777776653 2333333444 3344567788889988887776544
No 327
>PRK10203 hypothetical protein; Provisional
Probab=35.25 E-value=2e+02 Score=26.40 Aligned_cols=58 Identities=14% Similarity=0.119 Sum_probs=35.6
Q ss_pred HHHHHHHHHHcCC--CcCCCCCCCCCCCCC-cH-HHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 007327 469 AYEFVESMKKKGI--RVPGIGHRIKRGDNR-DK-RVELLQKFARTHFPSVKYMEYAVQVETY 526 (608)
Q Consensus 469 ~~~~v~~~l~~~~--~ipGFGH~vy~~~~~-DP-Ra~~L~~~~~~~~~~~~~~~~a~~~e~~ 526 (608)
+++-|++..++|+ .+||.|.|+-..+++ +| =......+.+..+.-.+++++-.+++.+
T Consensus 8 ~E~~I~eA~~~GefdnLpG~GKPL~~~d~~~~p~e~r~~~rilknag~lP~el~LrKE~~~l 69 (122)
T PRK10203 8 AERHILEAQRKGEFDNLPGSGEPLILDDDSHVPPELRAGYRLLKNAGCLPPELEQRREAIQL 69 (122)
T ss_pred HHHHHHHHHHcCCccCCCCCCCCCCCccCCCCCHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Confidence 4667788888885 899999999754321 11 1122233444445556777777776643
No 328
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=35.18 E-value=3.2e+02 Score=30.15 Aligned_cols=160 Identities=14% Similarity=0.147 Sum_probs=87.1
Q ss_pred hhcHHHHHHHhcCCCCCEEEEecCCCCHH---HHHHHHHHHHh-----CCCeEEcCCcccccccCccccc-ccCCccccc
Q 007327 89 RSAAASSMAALKQPTIRVVAIIAEGVPEA---DTKQLIAYARS-----NNKVVIGPATVGGIQAGAFKIG-DTAGTIDNI 159 (608)
Q Consensus 89 ~~~~~~~le~~~~~gv~~~viis~Gf~e~---~~~~l~~~a~~-----~g~rvlGPNc~Gi~~~~~~~l~-~~~~~~~~~ 159 (608)
+.....+.+.+.+...+.++|+|+..+|. |.+.+.+.+++ .|.+|+.-||.|+-.....+.. .+.+-+...
T Consensus 67 ~~L~~~i~~~~~~~~p~~I~v~~tC~~~liGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~g~~~~G~~~a~~al~~~~ 146 (428)
T cd01965 67 DNLIEALKNLLSRYKPDVIGVLTTCLTETIGDDVAGFIKEFRAEGPEPADFPVVYASTPSFKGSHETGYDNAVKAIIEQL 146 (428)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcchhhcCCCHHHHHHHHHhhccCCCCCeEEEeeCCCCCCcHHHHHHHHHHHHHHHH
Confidence 33333444445555788899999999987 55666555553 6889999999888742210100 000011111
Q ss_pred cccc-CCCCCcEEEEec---ChhHHHHHHHHHHhcCCceeEEeecCCCCC------------CCCCHHHHHHHhhcCCCc
Q 007327 160 IHCK-LYRPGSVGFVSK---SGGMSNELYNTIARVTDGIYEGIAIGGDVF------------PGSTLSDHILRFNNIPQV 223 (608)
Q Consensus 160 ~p~~-~~~~G~valvSQ---SG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~------------~dv~~~d~l~~l~~Dp~T 223 (608)
.+.. ...++.|-++.- +..=..++...+.+.|+-...+....+..+ .+.++.|+- +=++-
T Consensus 147 ~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v~~~~~~s~~~d~~~~~~~~~~~~gg~~~e~i~----~~~~A 222 (428)
T cd01965 147 AKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEPIILPDLSDSLDGHLTDGYSPLTKGGTTLEEIR----DAGNA 222 (428)
T ss_pred hcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCEEEecCcccccCCCCCCCccccCCCCCcHHHHH----HhccC
Confidence 1111 136788998842 233246777888888888877765422110 023344443 33444
Q ss_pred cEEEEEEecCCccHHHHHHHHHhCCCCCCEEEE
Q 007327 224 KMMVVLGELGGRDEYSLVEALKQGKVNKPVVAW 256 (608)
Q Consensus 224 ~~I~ly~E~g~~~~~~f~~~~r~a~~~KPVvvl 256 (608)
+.-++. +-..+..+.+.+++ +.+.|-+.+
T Consensus 223 ~lniv~---~~~~~~~~a~~L~e-~~GiP~~~~ 251 (428)
T cd01965 223 KATIAL---GEYSGRKAAKALEE-KFGVPYILF 251 (428)
T ss_pred cEEEEE---ChhhhHHHHHHHHH-HHCCCeeec
Confidence 443332 12245666666665 367787754
No 329
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=34.87 E-value=5.2e+02 Score=26.55 Aligned_cols=67 Identities=10% Similarity=0.043 Sum_probs=41.2
Q ss_pred cccCCHHHHhhcCCCccEEEEeccCh---hcHHHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCe
Q 007327 64 PVHSTVEAACAAHPMADVFINFSSFR---SAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKV 132 (608)
Q Consensus 64 ~~y~sv~~i~~~~p~vDlavi~vp~~---~~~~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~r 132 (608)
.++..+.++-....++-+.+...-.. .-.+..+++|.+.|+..+++.-.-+ ....++.+.++++|+.
T Consensus 73 ~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~--ee~~~~~~~~~~~gl~ 142 (256)
T TIGR00262 73 KCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPL--EESGDLVEAAKKHGVK 142 (256)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCCh--HHHHHHHHHHHHCCCc
Confidence 45666777643211222323322221 1236778899999999998865433 3467899999999976
No 330
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=34.87 E-value=78 Score=32.38 Aligned_cols=54 Identities=20% Similarity=0.255 Sum_probs=30.5
Q ss_pred HHHHHHHhhcCCCccEEEEEEecCCc---c------------------HHHHHHHHHhC-CCCCCEEEEEeCCCccC
Q 007327 210 LSDHILRFNNIPQVKMMVVLGELGGR---D------------------EYSLVEALKQG-KVNKPVVAWVSGTCARL 264 (608)
Q Consensus 210 ~~d~l~~l~~Dp~T~~I~ly~E~g~~---~------------------~~~f~~~~r~a-~~~KPVvvlk~Grs~~g 264 (608)
+.+.++.+.+||++++|++..+ |-+ . .+.|.+..++. ...||||+..-|..-.|
T Consensus 34 l~~al~~~~~d~~vrvvVl~g~-g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg 109 (258)
T PRK09076 34 LKQLVLELNADKDVYALVITGD-GEKFFSAGADLNLFADGDKAVAREMARRFGEAFEALSAFRGVSIAAINGYAMGG 109 (258)
T ss_pred HHHHHHHHHhCCCceEEEEECC-CCCceEeCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEecH
Confidence 3455555666677777777666 411 0 01122233333 36899999987776543
No 331
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=34.76 E-value=47 Score=34.48 Aligned_cols=50 Identities=12% Similarity=0.082 Sum_probs=28.2
Q ss_pred cccCCHHHHhhcCCCccEEEEeccChh-cHHHHHHHhcCC-CCCEEEE-ecCCCCHH
Q 007327 64 PVHSTVEAACAAHPMADVFINFSSFRS-AAASSMAALKQP-TIRVVAI-IAEGVPEA 117 (608)
Q Consensus 64 ~~y~sv~~i~~~~p~vDlavi~vp~~~-~~~~~le~~~~~-gv~~~vi-is~Gf~e~ 117 (608)
..-.+++++ . +.|+++.+||... ....+++.+.+. .-..+++ -|++++.+
T Consensus 73 ~~~~~~~~~-~---~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s 125 (292)
T PRK07530 73 STATDLEDL-A---DCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISIT 125 (292)
T ss_pred EeeCCHHHh-c---CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH
Confidence 344566553 3 4899999999752 234555555432 1123343 57788753
No 332
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=34.29 E-value=4.3e+02 Score=25.43 Aligned_cols=176 Identities=11% Similarity=0.038 Sum_probs=82.3
Q ss_pred ccCCHHHHhhcCCCccEEEEeccChh-cHHHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCeEEcCCcccccc
Q 007327 65 VHSTVEAACAAHPMADVFINFSSFRS-AAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVGGIQ 143 (608)
Q Consensus 65 ~y~sv~~i~~~~p~vDlavi~vp~~~-~~~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~rvlGPNc~Gi~~ 143 (608)
....+.+..... .+++.+....... .....++.+.+.++.++|+.+.-. +. .. ..+.+++.++.++..++----.
T Consensus 17 ~~~g~~~~~~~~-g~~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~-~~-~~-~~~~l~~~~ip~v~~~~~~~~~ 92 (264)
T cd01537 17 VLKGIEEAAKAA-GYQVLLANSQNDAEKQLSALENLIARGVDGIIIAPSDL-TA-PT-IVKLARKAGIPVVLVDRDIPDG 92 (264)
T ss_pred HHHHHHHHHHHc-CCeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCC-cc-hh-HHHHhhhcCCCEEEeccCCCCC
Confidence 444455544444 3777665444321 134556666667898888755332 22 22 4677788899887655421000
Q ss_pred cCcccccccCCccccccc--ccCCCCCcEEEEecChh--H----HHHHHHHHHhcC-CceeEEeecCCCCCCCCCHHHHH
Q 007327 144 AGAFKIGDTAGTIDNIIH--CKLYRPGSVGFVSKSGG--M----SNELYNTIARVT-DGIYEGIAIGGDVFPGSTLSDHI 214 (608)
Q Consensus 144 ~~~~~l~~~~~~~~~~~p--~~~~~~G~valvSQSG~--l----~~~~~~~~~~~g-~G~s~~vs~Gn~~~~dv~~~d~l 214 (608)
.....++.-+.......- .......+|++++.+.. . ...+...+.+.| +.....+...... +-....+.
T Consensus 93 ~~~~~v~~d~~~~~~~~~~~l~~~g~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 170 (264)
T cd01537 93 DRVPSVGSDNEQAGYLAGEHLAEKGHRRIALLAGPLGSSTARERVAGFKDALKEAGPIEIVLVQEGDWDA--EKGYQAAE 170 (264)
T ss_pred cccceEecCcHHHHHHHHHHHHHhcCCcEEEEECCCCCCcHHHHHHHHHHHHHHcCCcChhhhccCCCCH--HHHHHHHH
Confidence 000011000000000000 00113568998876533 1 233344445555 3332233222222 22234455
Q ss_pred HHhhcCCCccEEEEEEecCCccHHHHHHHHHhCCC
Q 007327 215 LRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKV 249 (608)
Q Consensus 215 ~~l~~Dp~T~~I~ly~E~g~~~~~~f~~~~r~a~~ 249 (608)
+++...|+..+|... +......+++++++...
T Consensus 171 ~~l~~~~~~~~i~~~---~~~~a~~~~~~~~~~g~ 202 (264)
T cd01537 171 ELLTAHPDPTAIFAA---NDDMALGALRALREAGL 202 (264)
T ss_pred HHHhcCCCCCEEEEc---CcHHHHHHHHHHHHhCC
Confidence 666667766666655 33344556777776543
No 333
>TIGR00069 hisD histidinol dehydrogenase. This model describes a polypeptide sequence catalyzing the final step in histidine biosynthesis, found sometimes as an independent protein and sometimes as a part of a multifunctional protein.
Probab=34.27 E-value=5.2e+02 Score=28.53 Aligned_cols=72 Identities=13% Similarity=0.154 Sum_probs=46.7
Q ss_pred HHHHHHHhhcCCCccEEEEEEecCCccHHHHHHHHHhCC-CCCCEEEEEeCCCccCcccccccCCCCCcCCCCcchHHHH
Q 007327 210 LSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGK-VNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAK 288 (608)
Q Consensus 210 ~~d~l~~l~~Dp~T~~I~ly~E~g~~~~~~f~~~~r~a~-~~KPVvvlk~Grs~~g~~~~aa~sHtgalag~~~~~a~~~ 288 (608)
.+|+|.-.++||+..+|++--. +++++.+.+.- + +-...++ . +..
T Consensus 219 AaDLLaQAEHd~~a~~iLvT~s------~~la~~V~~~v~~-----------------ql~~l~r-------~----~i~ 264 (393)
T TIGR00069 219 AADLLSQAEHDPDAQAILVTTS------EELAEAVQEEIER-----------------QLATLPR-------R----EIA 264 (393)
T ss_pred HHHHHHHhccCCCCcEEEEECC------HHHHHHHHHHHHH-----------------HHHhCCh-------H----HHH
Confidence 4689999999999999887633 44444443311 0 0001111 1 566
Q ss_pred HHHHHHc-CCcccCCHHHHHHHHHHHHH
Q 007327 289 NQALRDA-GAVVPTSYEAFESAIKETFE 315 (608)
Q Consensus 289 ~a~~~qa-Gvi~v~~~~el~~~~~~~~~ 315 (608)
+.++++. .++.|+|++|.++++..+..
T Consensus 265 ~~al~~~g~ii~v~~l~ea~~~~N~~AP 292 (393)
T TIGR00069 265 RKSLEDNGAIILVDDLEEAIEISNDYAP 292 (393)
T ss_pred HHHHHhCCEEEEECCHHHHHHHHHhhCh
Confidence 6777764 47899999999998876654
No 334
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=34.25 E-value=4.5e+02 Score=28.18 Aligned_cols=21 Identities=5% Similarity=0.033 Sum_probs=17.0
Q ss_pred HHHHHHhcCCCCCEEEEecCC
Q 007327 93 ASSMAALKQPTIRVVAIIAEG 113 (608)
Q Consensus 93 ~~~le~~~~~gv~~~viis~G 113 (608)
..++++|.+.++|.+|.+|+.
T Consensus 118 ~nll~aa~~~~vk~~V~~SS~ 138 (370)
T PLN02695 118 FNMLEAARINGVKRFFYASSA 138 (370)
T ss_pred HHHHHHHHHhCCCEEEEeCch
Confidence 468898988999988888763
No 335
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=34.19 E-value=38 Score=35.81 Aligned_cols=53 Identities=26% Similarity=0.291 Sum_probs=38.8
Q ss_pred cccCCHHHHhhcCCCccEEEEeccChhcHHHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCeEEcCCccc
Q 007327 64 PVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVG 140 (608)
Q Consensus 64 ~~y~sv~~i~~~~p~vDlavi~vp~~~~~~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~rvlGPNc~G 140 (608)
+-|.++.. +. .+|.+|.+||.+.....+++... +|.+.|.+.++-+++|.++=
T Consensus 164 K~Y~~i~~--~~--t~dfvimFiP~E~~~~~a~~~d~--------------------~l~~~A~~k~V~l~sPstL~ 216 (304)
T PF02646_consen 164 KDYWNIIP--PN--TPDFVIMFIPSESAYSAALEADP--------------------ELIEYAFKKNVVLVSPSTLM 216 (304)
T ss_pred CCCCccCC--CC--CCCEEEEEecChHHHHHHHhcCh--------------------HHHHHHHHCCcEEecHHHHH
Confidence 45766432 22 47999999999875555555433 58899999999999998853
No 336
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=34.04 E-value=4.2e+02 Score=29.22 Aligned_cols=177 Identities=13% Similarity=0.064 Sum_probs=98.6
Q ss_pred ChhcHHHHHHHhcCCCCCEEEEecCCCCHH---HHHHHHHHHH-hCCCeEEcCCcccccccCc-ccccc-cCCccccccc
Q 007327 88 FRSAAASSMAALKQPTIRVVAIIAEGVPEA---DTKQLIAYAR-SNNKVVIGPATVGGIQAGA-FKIGD-TAGTIDNIIH 161 (608)
Q Consensus 88 ~~~~~~~~le~~~~~gv~~~viis~Gf~e~---~~~~l~~~a~-~~g~rvlGPNc~Gi~~~~~-~~l~~-~~~~~~~~~p 161 (608)
.+....++.+...+...+.++|+|+..++. |.+.+.+.++ +.|+.|+.-||-|+..+.. .+... +.+-+....+
T Consensus 74 ~~kL~~aI~~~~~~~~P~~I~V~ttC~~~iIGdDi~~v~~~~~~~~~~pvi~v~t~gf~g~~~~~G~~~a~~al~~~~~~ 153 (426)
T cd01972 74 EKKLEDTIKEAYSRYKPKAIFVATSCATGIIGDDVESVVEELEDEIGIPVVALHCEGFKGKHWRSGFDAAFHGILRHLVP 153 (426)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCChHHHhccCHHHHHHHHHHhhCCCEEEEeCCccCCccHhHHHHHHHHHHHHHhcC
Confidence 333233444444445789999999998887 4555554444 5689999999999976322 01100 0000111111
Q ss_pred c--cCCCCCcEEEEecChh-------HHHHHHHHHHhcCCceeEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEec
Q 007327 162 C--KLYRPGSVGFVSKSGG-------MSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGEL 232 (608)
Q Consensus 162 ~--~~~~~G~valvSQSG~-------l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~T~~I~ly~E~ 232 (608)
. ....++.|-|+.-... =..++...+.+.|+-+..+++-|... .| +.+=++-+.-++.
T Consensus 154 ~~~~~~~~~~VNliG~~~~~~~~~~~d~~ei~~lL~~~Gi~v~~~~~~~~~~------~e----i~~~~~A~lniv~--- 220 (426)
T cd01972 154 PQDPTKQEDSVNIIGLWGGPERTEQEDVDEFKRLLNELGLRVNAIIAGGCSV------EE----LERASEAAANVTL--- 220 (426)
T ss_pred CCCCCCCCCCEEEEccCCCccccccccHHHHHHHHHHcCCeEEEEeCCCCCH------HH----HHhcccCCEEEEE---
Confidence 1 1234668988875532 23567778888888887776654443 34 3455555555443
Q ss_pred CCccHHHHHHHHHhCCCCCCEEEEEeCCCccCcccccccCCCCCcCCCCcchHHHHHHHHHHcCC
Q 007327 233 GGRDEYSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGA 297 (608)
Q Consensus 233 g~~~~~~f~~~~r~a~~~KPVvvlk~Grs~~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaGv 297 (608)
+-..+..+.+.+++ +.+.|.+-+ ..+-| -+++++-++++.+..|+
T Consensus 221 ~~~~g~~~a~~Lee-~~GiP~~~~---~~P~G----------------~~~T~~~l~~ia~~~g~ 265 (426)
T cd01972 221 CLDLGYYLGAALEQ-RFGVPEIKA---PQPYG----------------IEATDKWLREIAKVLGM 265 (426)
T ss_pred ChhHHHHHHHHHHH-HhCCCeEec---CCccC----------------HHHHHHHHHHHHHHhCC
Confidence 12234556666554 357786643 12222 11344777777777784
No 337
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=33.96 E-value=2.5e+02 Score=32.06 Aligned_cols=40 Identities=10% Similarity=-0.058 Sum_probs=19.2
Q ss_pred CCCEEEEecCCCCHHHHHHHHHHHHhC--CCeEEcCCccccc
Q 007327 103 TIRVVAIIAEGVPEADTKQLIAYARSN--NKVVIGPATVGGI 142 (608)
Q Consensus 103 gv~~~viis~Gf~e~~~~~l~~~a~~~--g~rvlGPNc~Gi~ 142 (608)
..+.++|+|+..+|...+.+..++++. +++|+.-+|-|+-
T Consensus 85 ~P~~I~V~sTC~seiIGdDi~~v~~~~~~~~~Vi~v~t~gf~ 126 (519)
T PRK02910 85 QPDLIVVGPSCTAELLQEDLGGLAKHAGLPIPVLPLELNAYR 126 (519)
T ss_pred CCCEEEEeCCcHHHHhccCHHHHHHHhCCCCCEEEEecCCcc
Confidence 455555555555555333333333332 3455555555543
No 338
>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore
Probab=33.82 E-value=6e+02 Score=26.97 Aligned_cols=120 Identities=5% Similarity=-0.021 Sum_probs=69.8
Q ss_pred HHHHHHHHHhCCCeEEcCCcccc-cccCcccccccCCcccccccc------------cCCCCCcEEEEecChhHHHH---
Q 007327 119 TKQLIAYARSNNKVVIGPATVGG-IQAGAFKIGDTAGTIDNIIHC------------KLYRPGSVGFVSKSGGMSNE--- 182 (608)
Q Consensus 119 ~~~l~~~a~~~g~rvlGPNc~Gi-~~~~~~~l~~~~~~~~~~~p~------------~~~~~G~valvSQSG~l~~~--- 182 (608)
...+...+.+.++.++.|.+-.- +.... .. -.|....|. ..+..-.|++|.++...+..
T Consensus 98 ~~~v~~~~~~~~iP~Is~~a~~~~ls~~~-~~----~~~~R~~psd~~~~~a~~~~l~~~~w~~vaii~~~~~~g~~~~~ 172 (377)
T cd06379 98 PTSVSYTAGFYRIPVVGISTRDSIFSDKN-IH----LSFLRTVPPYSHQADVWLEMLRSFKWNKVILLVSDDHEGRAAQK 172 (377)
T ss_pred HHHHHHHhhCCCCcEEecccCCccccCcc-cc----ccEEEecCCHHHHHHHHHHHHHHcCCeEEEEEEEcCcchhHHHH
Confidence 44556678889999998864221 11110 00 011000110 12466789999998875443
Q ss_pred -HHHHHHhcCC----ceeEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCccHHHHHHHHHhCCC
Q 007327 183 -LYNTIARVTD----GIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKV 249 (608)
Q Consensus 183 -~~~~~~~~g~----G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~T~~I~ly~E~g~~~~~~f~~~~r~a~~ 249 (608)
+.+.+++.|+ -+......- .. +.++...+.-+.+ .+.++|+++.. ..+...+++.+++...
T Consensus 173 ~~~~~~~~~g~~~~~~v~~~~~~~-~~--~~d~~~~l~~ik~-~~~~vIvl~~~--~~~~~~l~~qa~~~g~ 238 (377)
T cd06379 173 RFETLLEEREIEFKIKVEKVVEFE-PG--EKNVTSLLQEAKE-LTSRVILLSAS--EDDAAVIYRNAGMLNM 238 (377)
T ss_pred HHHHHHHhcCCccceeeeEEEecC-Cc--hhhHHHHHHHHhh-cCCeEEEEEcC--HHHHHHHHHHHHHcCC
Confidence 4445566676 444443332 12 4567777777754 57788888765 4567888888888653
No 339
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=33.74 E-value=31 Score=35.68 Aligned_cols=93 Identities=15% Similarity=0.179 Sum_probs=62.0
Q ss_pred HHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCeE---------------EcCCcccccccCcccccc-cCCccccc
Q 007327 96 MAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVV---------------IGPATVGGIQAGAFKIGD-TAGTIDNI 159 (608)
Q Consensus 96 le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~rv---------------lGPNc~Gi~~~~~~~l~~-~~~~~~~~ 159 (608)
++++...|..++.+|.+=..+...++|.++|++.||-+ +|+.-+||-|-+-..+-. ++. +...
T Consensus 122 I~~Ar~~GADavLLI~~~L~~~~l~el~~~A~~LGm~~LVEVh~~eEl~rAl~~ga~iIGINnRdL~tf~vdl~~-t~~l 200 (254)
T COG0134 122 IYEARAAGADAVLLIVAALDDEQLEELVDRAHELGMEVLVEVHNEEELERALKLGAKIIGINNRDLTTLEVDLET-TEKL 200 (254)
T ss_pred HHHHHHcCcccHHHHHHhcCHHHHHHHHHHHHHcCCeeEEEECCHHHHHHHHhCCCCEEEEeCCCcchheecHHH-HHHH
Confidence 34455589999999998888877889999999999865 388888887654311100 011 1111
Q ss_pred ccccCCCCCcEEEEecChhHHHHHHHHHHhcCC
Q 007327 160 IHCKLYRPGSVGFVSKSGGMSNELYNTIARVTD 192 (608)
Q Consensus 160 ~p~~~~~~G~valvSQSG~l~~~~~~~~~~~g~ 192 (608)
. +..|..+-+||-||-.+.+=+..+...|.
T Consensus 201 a---~~~p~~~~~IsESGI~~~~dv~~l~~~ga 230 (254)
T COG0134 201 A---PLIPKDVILISESGISTPEDVRRLAKAGA 230 (254)
T ss_pred H---hhCCCCcEEEecCCCCCHHHHHHHHHcCC
Confidence 1 24678899999999887765555555443
No 340
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=33.73 E-value=76 Score=32.48 Aligned_cols=54 Identities=22% Similarity=0.309 Sum_probs=31.1
Q ss_pred HHHHHHHhhcCCCccEEEEEEecCCc---c----------------HHHHHHHHHhCCCCCCEEEEEeCCCccC
Q 007327 210 LSDHILRFNNIPQVKMMVVLGELGGR---D----------------EYSLVEALKQGKVNKPVVAWVSGTCARL 264 (608)
Q Consensus 210 ~~d~l~~l~~Dp~T~~I~ly~E~g~~---~----------------~~~f~~~~r~a~~~KPVvvlk~Grs~~g 264 (608)
+.+.++.+..||++++|++..+ |-+ . ...|....+.....||||+..-|..-.|
T Consensus 36 l~~~l~~~~~d~~v~~vVl~g~-g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a~Gg 108 (259)
T PRK06494 36 LEEVFDDFAADPEQWVAIVTGA-GDKAFSAGNDLKEQAAGGKRGWPESGFGGLTSRFDLDKPIIAAVNGVAMGG 108 (259)
T ss_pred HHHHHHHHhhCCCcEEEEEEcC-CCCceeccccHHhHhhcCcchhhhHHHHHHHHHhcCCCCEEEEECCEEecH
Confidence 3455566666777777777666 411 0 1122222223346899999987776543
No 341
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=33.36 E-value=90 Score=35.58 Aligned_cols=129 Identities=16% Similarity=0.251 Sum_probs=72.4
Q ss_pred cCCceeEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCccHHHHHHHHHhCC--CCCCEEEEEeCCCccCccc
Q 007327 190 VTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGK--VNKPVVAWVSGTCARLFKS 267 (608)
Q Consensus 190 ~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~T~~I~ly~E~g~~~~~~f~~~~r~a~--~~KPVvvlk~Grs~~g~~~ 267 (608)
...+|..+|+.-... -..-+.+.-++.. ..-|.+++| .+.--+.|++++...+ ..+|.+.+-....+..+-.
T Consensus 199 ~~~~f~~~ig~s~~~---~~~~~~~~~~A~~--~~pvlI~GE-~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e 272 (520)
T PRK10820 199 DDSAFSQIVAVSPKM---RQVVEQARKLAML--DAPLLITGD-TGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVE 272 (520)
T ss_pred ccccccceeECCHHH---HHHHHHHHHHhCC--CCCEEEECC-CCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHH
Confidence 456777776543321 1123333333332 334889999 5555566778877654 4579998876554321000
Q ss_pred ccccCCC-CCcCCCCcchHHHHHHHHHHc--CCcccCCHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 007327 268 EVQFGHA-GAKSGGEMESAQAKNQALRDA--GAVVPTSYEAFESAIKETFEKLVEEGKIPPVKE 328 (608)
Q Consensus 268 ~aa~sHt-galag~~~~~a~~~~a~~~qa--Gvi~v~~~~el~~~~~~~~~~~~~~G~~~~~~~ 328 (608)
..-++|. |+..+.. ......|+++ |.+..+++++|-...+.-+-++...|.+.+..+
T Consensus 273 ~elFG~~~~~~~~~~----~~~~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~ 332 (520)
T PRK10820 273 SELFGHAPGAYPNAL----EGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGE 332 (520)
T ss_pred HHhcCCCCCCcCCcc----cCCCChhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCC
Confidence 1113332 2322222 2223456554 999999999998877766656666766555443
No 342
>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor. Ligand-binding domain of the T1R taste receptor. The T1R is a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptors, GABAb receptors, the calcium-sensing receptor (CaSR), the V2R pheromone receptors, and a small group of uncharacterized orphan receptors.
Probab=33.34 E-value=5.2e+02 Score=27.99 Aligned_cols=136 Identities=10% Similarity=0.027 Sum_probs=77.5
Q ss_pred cCCCCHHHHHHHHHHHHhCCCeEEcCCccccc-ccCcccccccCCcccccccc------------cCCCCCcEEEEecCh
Q 007327 111 AEGVPEADTKQLIAYARSNNKVVIGPATVGGI-QAGAFKIGDTAGTIDNIIHC------------KLYRPGSVGFVSKSG 177 (608)
Q Consensus 111 s~Gf~e~~~~~l~~~a~~~g~rvlGPNc~Gi~-~~~~~~l~~~~~~~~~~~p~------------~~~~~G~valvSQSG 177 (608)
-+++.-.....+..++.+.++.++.|.+-.-. +... .. ...| ...|. ..+..-+|+++..+.
T Consensus 112 iGp~~S~~~~av~~i~~~~~vp~is~~~~~~~lt~~~-~~---~~~f-r~~~~~~~~~~al~~~l~~~~~k~vaii~~~~ 186 (410)
T cd06363 112 IGPDSSTLALTVAPLFSFFLIPQISYGASSEVLSNKE-LY---PSFL-RTVPSDKDQIEAMVQLLQEFGWNWVAFLGSDD 186 (410)
T ss_pred ECCCccHHHHHHHHHhcccccccccccccCccccccc-cC---CCee-EecCCcHHHHHHHHHHHHHCCCcEEEEEEeCC
Confidence 33343334456678899999999998764321 1111 00 0001 01111 113455799999888
Q ss_pred hHHHHHH----HHHHhcCCceeEEeec--CCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCccHHHHHHHHHhCCCCC
Q 007327 178 GMSNELY----NTIARVTDGIYEGIAI--GGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNK 251 (608)
Q Consensus 178 ~l~~~~~----~~~~~~g~G~s~~vs~--Gn~~~~dv~~~d~l~~l~~Dp~T~~I~ly~E~g~~~~~~f~~~~r~a~~~K 251 (608)
..+.... ..+.+.|+-+....+. +... +.++...+.-+.. .+.++|++... ..+...|++.+++....+
T Consensus 187 ~~g~~~~~~~~~~l~~~gi~i~~~~~~~~~~~~--~~d~~~~l~~i~~-~~~dvIil~~~--~~~~~~il~qa~~~g~~~ 261 (410)
T cd06363 187 EYGRDGLQLFSELIANTGICIAYQGLIPLDTDP--ETDYQQILKQINQ-TKVNVIVVFAS--RQPAEAFFNSVIQQNLTG 261 (410)
T ss_pred hhHHHHHHHHHHHHHHCCeEEEEEEEecCCCch--HHHHHHHHHHHhc-CCCeEEEEEcC--hHHHHHHHHHHHhcCCCC
Confidence 8776654 3455556544433332 2222 4567777777754 35678888765 456678999988877545
Q ss_pred CEEEE
Q 007327 252 PVVAW 256 (608)
Q Consensus 252 PVvvl 256 (608)
++.+.
T Consensus 262 ~~~i~ 266 (410)
T cd06363 262 KVWIA 266 (410)
T ss_pred CEEEE
Confidence 54443
No 343
>PRK12447 histidinol dehydrogenase; Reviewed
Probab=33.17 E-value=5e+02 Score=28.99 Aligned_cols=73 Identities=12% Similarity=0.104 Sum_probs=47.4
Q ss_pred CHHHHHHHhhcCCCccEEEEEEecCCccHHHHHHHHHhCC-CCCCEEEEEeCCCccCcccccccCCCCCcCCCCcchHHH
Q 007327 209 TLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGK-VNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQA 287 (608)
Q Consensus 209 ~~~d~l~~l~~Dp~T~~I~ly~E~g~~~~~~f~~~~r~a~-~~KPVvvlk~Grs~~g~~~~aa~sHtgalag~~~~~a~~ 287 (608)
=.+|+|.-.++||+..+|++--. +++++...+.- + +-...++ . ..
T Consensus 244 vAaDLLaQAEHd~~a~~iLvT~s------~~la~~V~~~v~~-----------------ql~~l~r-------~----~i 289 (426)
T PRK12447 244 VATDLLGQAEHGPNSPAVLITTS------RKLAEEVLAEIER-----------------LLAILPT-------A----DV 289 (426)
T ss_pred HHHHHHHHhccCCCCceEEEECC------HHHHHHHHHHHHH-----------------HHHhCCH-------H----HH
Confidence 35689999999999999887633 55555543311 0 0001111 1 56
Q ss_pred HHHHHHHcC-CcccCCHHHHHHHHHHHHH
Q 007327 288 KNQALRDAG-AVVPTSYEAFESAIKETFE 315 (608)
Q Consensus 288 ~~a~~~qaG-vi~v~~~~el~~~~~~~~~ 315 (608)
...+++..| ++.|+|++|.++++..+..
T Consensus 290 ~~~sl~~~g~ii~v~~l~ea~~~~N~~AP 318 (426)
T PRK12447 290 ASAAWRDYGEVILCDDLEEMVAEADRYAS 318 (426)
T ss_pred HHHHHHhCCEEEEECCHHHHHHHHHhhCh
Confidence 667778866 6689999999998876654
No 344
>PRK13770 histidinol dehydrogenase; Provisional
Probab=33.15 E-value=6.2e+02 Score=28.17 Aligned_cols=72 Identities=4% Similarity=0.063 Sum_probs=47.1
Q ss_pred HHHHHHHhhcCCCccEEEEEEecCCccHHHHHHHHHhCC-CCCCEEEEEeCCCccCcccccccCCCCCcCCCCcchHHHH
Q 007327 210 LSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGK-VNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAK 288 (608)
Q Consensus 210 ~~d~l~~l~~Dp~T~~I~ly~E~g~~~~~~f~~~~r~a~-~~KPVvvlk~Grs~~g~~~~aa~sHtgalag~~~~~a~~~ 288 (608)
.+|+|.-.+.||+..+|++--. +++++...+.- +. -....+ ....
T Consensus 240 AaDLLaQAEHd~~a~~iLvT~s------~~la~~V~~ev~~q-----------------l~~lpr-----------~~i~ 285 (416)
T PRK13770 240 VYDVFAQAEHDELARTYVISED------AQVLKDLESRIAKA-----------------LPNVDR-----------YDIV 285 (416)
T ss_pred HHHHHHHhccCCCCcEEEEeCC------HHHHHHHHHHHHHH-----------------HHhCCh-----------HHHH
Confidence 5799999999999999887633 45555443311 00 000111 1566
Q ss_pred HHHHHHcC-CcccCCHHHHHHHHHHHHH
Q 007327 289 NQALRDAG-AVVPTSYEAFESAIKETFE 315 (608)
Q Consensus 289 ~a~~~qaG-vi~v~~~~el~~~~~~~~~ 315 (608)
..+++..| ++.++|++|.++++..+..
T Consensus 286 ~~al~~~g~ii~v~~~eeai~~~N~~AP 313 (416)
T PRK13770 286 SKSIANQHYLIHASNFDEACHVMNTIAP 313 (416)
T ss_pred HHHHHhCCEEEEECCHHHHHHHHHhhCh
Confidence 77788866 5689999999998876654
No 345
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=33.12 E-value=1.2e+02 Score=33.33 Aligned_cols=35 Identities=9% Similarity=0.087 Sum_probs=24.7
Q ss_pred CccEEEEeccChhcHHHHHHHhcCCCCCEEEEecCCCC
Q 007327 78 MADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVP 115 (608)
Q Consensus 78 ~vDlavi~vp~~~~~~~~le~~~~~gv~~~viis~Gf~ 115 (608)
++|+++.++|... ...+...+. +|. .+|-+|+-|.
T Consensus 104 ~~DvVf~Alp~~~-s~~i~~~~~-~g~-~VIDlSs~fR 138 (381)
T PLN02968 104 DVDAVFCCLPHGT-TQEIIKALP-KDL-KIVDLSADFR 138 (381)
T ss_pred CCCEEEEcCCHHH-HHHHHHHHh-CCC-EEEEcCchhc
Confidence 4899999999864 566777764 664 4566676663
No 346
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=32.50 E-value=57 Score=34.85 Aligned_cols=100 Identities=18% Similarity=0.319 Sum_probs=61.2
Q ss_pred cEEEEEEecCCccHHHHHHHHHhCC--CCCCEEEEEeCCCccCcccccccCCC-CCcCCCCcchHHHHHHHHH--HcCCc
Q 007327 224 KMMVVLGELGGRDEYSLVEALKQGK--VNKPVVAWVSGTCARLFKSEVQFGHA-GAKSGGEMESAQAKNQALR--DAGAV 298 (608)
Q Consensus 224 ~~I~ly~E~g~~~~~~f~~~~r~a~--~~KPVvvlk~Grs~~g~~~~aa~sHt-galag~~~~~a~~~~a~~~--qaGvi 298 (608)
.-|++++| .+.--+.+++++...+ ..+|.|.+-.+.-...+-...-++|. |+..|.. ......|+ +-|.+
T Consensus 23 ~pVLI~GE-~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~----~~~~G~~~~a~gGtL 97 (329)
T TIGR02974 23 RPVLIIGE-RGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQ----KRHQGRFERADGGTL 97 (329)
T ss_pred CCEEEECC-CCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcc----cccCCchhhCCCCEE
Confidence 44899999 5554456777776654 56899999887654321122334553 3333332 21122233 45899
Q ss_pred ccCCHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 007327 299 VPTSYEAFESAIKETFEKLVEEGKIPPVKE 328 (608)
Q Consensus 299 ~v~~~~el~~~~~~~~~~~~~~G~~~~~~~ 328 (608)
..+++++|-.-.+.-+-++...+.+.+..+
T Consensus 98 ~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~ 127 (329)
T TIGR02974 98 FLDELATASLLVQEKLLRVIEYGEFERVGG 127 (329)
T ss_pred EeCChHhCCHHHHHHHHHHHHcCcEEecCC
Confidence 999999998888776666666666555433
No 347
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=32.45 E-value=30 Score=38.81 Aligned_cols=102 Identities=17% Similarity=0.291 Sum_probs=70.3
Q ss_pred EEEEEecCCccHHHHHHHHHhCC--CCCCEEEEEeCCCccCcccccccCC-CCCcCCCCcchHHHHHHHHH--HcCCccc
Q 007327 226 MVVLGELGGRDEYSLVEALKQGK--VNKPVVAWVSGTCARLFKSEVQFGH-AGAKSGGEMESAQAKNQALR--DAGAVVP 300 (608)
Q Consensus 226 I~ly~E~g~~~~~~f~~~~r~a~--~~KPVvvlk~Grs~~g~~~~aa~sH-tgalag~~~~~a~~~~a~~~--qaGvi~v 300 (608)
|++.+| ++.-=+-.++++.+.+ ++||-|++-.|.-++.+=..--++| -||.+|.. .-....|+ +-|-+..
T Consensus 167 VLI~GE-SGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhekGAFTGA~----~~r~G~fE~A~GGTLfL 241 (464)
T COG2204 167 VLITGE-SGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHEKGAFTGAI----TRRIGRFEQANGGTLFL 241 (464)
T ss_pred EEEECC-CCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhcccccCcCCcc----cccCcceeEcCCceEEe
Confidence 789999 7766667788888876 5789999988876654222235677 45555555 33334554 4589999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 007327 301 TSYEAFESAIKETFEKLVEEGKIPPVKEVTPP 332 (608)
Q Consensus 301 ~~~~el~~~~~~~~~~~~~~G~~~~~~~~~~p 332 (608)
|.+.||.--++.-+=+...++.++...+..+-
T Consensus 242 DEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i 273 (464)
T COG2204 242 DEIGEMPLELQVKLLRVLQEREFERVGGNKPI 273 (464)
T ss_pred eccccCCHHHHHHHHHHHHcCeeEecCCCccc
Confidence 99999988777666566677777666554444
No 348
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=32.42 E-value=3.4e+02 Score=28.84 Aligned_cols=112 Identities=19% Similarity=0.182 Sum_probs=65.4
Q ss_pred CCCHHHHHHHHHHHHhCCCeEEcCCcccccccCcccccccCCcccccccccCCCCCcEEEE------ecChhHHHHHHHH
Q 007327 113 GVPEADTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFV------SKSGGMSNELYNT 186 (608)
Q Consensus 113 Gf~e~~~~~l~~~a~~~g~rvlGPNc~Gi~~~~~~~l~~~~~~~~~~~p~~~~~~G~valv------SQSG~l~~~~~~~ 186 (608)
.++|+.-+++.+.+++.|-+ ||-..- .|. . -+-+-|++| ...+.+...+-+.
T Consensus 26 ~Vs~eTr~kV~~a~~elgY~---pN~~Ar------~L~---~----------~~s~~Ig~i~p~~~~~~~~~i~~gi~~~ 83 (333)
T COG1609 26 YVSEETREKVLAAIKELGYR---PNAVAR------SLR---T----------GRTKTIGLVVPDITNPFFAEILKGIEEA 83 (333)
T ss_pred CCCHHHHHHHHHHHHHHCCC---CCHHHH------HHH---h----------CCCCEEEEEeCCCCCchHHHHHHHHHHH
Confidence 57788889999999998876 764321 110 0 033455555 3455566666666
Q ss_pred HHhcCCceeEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCccHHHHHHHHHhCCCCCCEEEE
Q 007327 187 IARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAW 256 (608)
Q Consensus 187 ~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~T~~I~ly~E~g~~~~~~f~~~~r~a~~~KPVvvl 256 (608)
+.+.|.- ..+...+.. .-...++++.+. +..+..|+++- ......+.+.+.+ .+.|+|++
T Consensus 84 ~~~~gy~--~~l~~~~~~--~~~e~~~~~~l~-~~~vdGiIi~~---~~~~~~~~~~l~~--~~~P~V~i 143 (333)
T COG1609 84 AREAGYS--LLLANTDDD--PEKEREYLETLL-QKRVDGLILLG---ERPNDSLLELLAA--AGIPVVVI 143 (333)
T ss_pred HHHcCCE--EEEECCCCC--HHHHHHHHHHHH-HcCCCEEEEec---CCCCHHHHHHHHh--cCCCEEEE
Confidence 6655554 444444442 333455555554 55666676663 3344555555555 48999988
No 349
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=32.24 E-value=1.2e+02 Score=29.56 Aligned_cols=50 Identities=22% Similarity=0.271 Sum_probs=34.4
Q ss_pred HHHHHHHhhcCCCccEEEEEEe-cCCc--cHHHHHHHHHhCCCCCCEEEEEe---CCCc
Q 007327 210 LSDHILRFNNIPQVKMMVVLGE-LGGR--DEYSLVEALKQGKVNKPVVAWVS---GTCA 262 (608)
Q Consensus 210 ~~d~l~~l~~Dp~T~~I~ly~E-~g~~--~~~~f~~~~r~a~~~KPVvvlk~---Grs~ 262 (608)
+...|+.+.+|+ ++.|++++. +|.. ...+++..+++ ..||||++.. |...
T Consensus 18 l~~~l~~a~~~~-~~~vvl~InSpGG~v~~~~~i~~~l~~--~~kPvia~v~~~~G~Aa 73 (187)
T cd07020 18 LERAIDQAEEGG-ADALIIELDTPGGLLDSTREIVQAILA--SPVPVVVYVYPSGARAA 73 (187)
T ss_pred HHHHHHHHHhCC-CCEEEEEEECCCCCHHHHHHHHHHHHh--CCCCEEEEEecCCCCch
Confidence 567778887766 899999988 3322 24555555554 6799999886 5543
No 350
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=32.20 E-value=1.2e+02 Score=29.52 Aligned_cols=50 Identities=14% Similarity=0.189 Sum_probs=34.0
Q ss_pred HHHHHHhhcCCCccEEEEEEecCCcc---HHHHHHHHHhCCCCCCEEEEEeCCCcc
Q 007327 211 SDHILRFNNIPQVKMMVVLGELGGRD---EYSLVEALKQGKVNKPVVAWVSGTCAR 263 (608)
Q Consensus 211 ~d~l~~l~~Dp~T~~I~ly~E~g~~~---~~~f~~~~r~a~~~KPVvvlk~Grs~~ 263 (608)
.+.|+...+++ .+.|++++...... .++..+.+++ ..||||++..|....
T Consensus 19 ~~~l~~a~~~~-~~~ivl~inspGG~v~~~~~I~~~l~~--~~~pvva~V~g~AaS 71 (178)
T cd07021 19 ERALKEAKEEG-ADAVVLDIDTPGGRVDSALEIVDLILN--SPIPTIAYVNDRAAS 71 (178)
T ss_pred HHHHHHHHhCC-CCeEEEEEECcCCCHHHHHHHHHHHHh--CCCCEEEEECCchHH
Confidence 44555566676 89999999933333 3455555554 569999999877553
No 351
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=31.90 E-value=1.9e+02 Score=31.29 Aligned_cols=87 Identities=16% Similarity=0.096 Sum_probs=48.7
Q ss_pred CCCCCcEEEEEcCCch---HHHHHhhCcccCCCCCCcEEEEeCC-CCCCccccccCceeecccccCCHHHHhhcCCCccE
Q 007327 6 LFSKTTQALFYNYKQL---PIQRMLDFDFLCGRETPSVAGIINP-GAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADV 81 (608)
Q Consensus 6 l~~p~s~avv~g~~~~---~~~~l~~~~~~~~~g~~~v~~v~~p-~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDl 81 (608)
-..|-+.+.|-|++|- .+|.....|. .|.+++-. .|.....++..+.+-.-. -++..+...+ .+|+
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~ga-------~Via~~~~~~K~e~a~~lGAd~~i~~~-~~~~~~~~~~--~~d~ 232 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMGA-------EVIAITRSEEKLELAKKLGADHVINSS-DSDALEAVKE--IADA 232 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcCC-------eEEEEeCChHHHHHHHHhCCcEEEEcC-CchhhHHhHh--hCcE
Confidence 3677777777788876 6776666653 25555512 211111122233332222 2222222222 2899
Q ss_pred EEEeccChhcHHHHHHHhcCCC
Q 007327 82 FINFSSFRSAAASSMAALKQPT 103 (608)
Q Consensus 82 avi~vp~~~~~~~~le~~~~~g 103 (608)
++.+++ ...+...++.+...|
T Consensus 233 ii~tv~-~~~~~~~l~~l~~~G 253 (339)
T COG1064 233 IIDTVG-PATLEPSLKALRRGG 253 (339)
T ss_pred EEECCC-hhhHHHHHHHHhcCC
Confidence 999999 677899999988544
No 352
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=31.76 E-value=3.2e+02 Score=27.94 Aligned_cols=120 Identities=17% Similarity=0.169 Sum_probs=68.4
Q ss_pred cEEEEecChhHHHHHHHHHHh-cCCceeEEeecCCCCC-----CCC-CHHHHHHHhhcCCCccEEEEEEecCCccHHHHH
Q 007327 169 SVGFVSKSGGMSNELYNTIAR-VTDGIYEGIAIGGDVF-----PGS-TLSDHILRFNNIPQVKMMVVLGELGGRDEYSLV 241 (608)
Q Consensus 169 ~valvSQSG~l~~~~~~~~~~-~g~G~s~~vs~Gn~~~-----~dv-~~~d~l~~l~~Dp~T~~I~ly~E~g~~~~~~f~ 241 (608)
+|+++.-+|.++..++..+.+ .++-+..++..-.+.. .++ ...|+-+.+ ++++ ++ ++ +..+....
T Consensus 3 kV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll-~~~D--vV---id--~t~p~~~~ 74 (257)
T PRK00048 3 KVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVL-ADAD--VL---ID--FTTPEATL 74 (257)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhc-cCCC--EE---EE--CCCHHHHH
Confidence 588999999999999887765 3566666665443210 011 112332223 3444 43 33 34555556
Q ss_pred HHHHhCC-CCCCEEEEEeCCCccCcccccccCCCCCcCCCCcchHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHH
Q 007327 242 EALKQGK-VNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEK 316 (608)
Q Consensus 242 ~~~r~a~-~~KPVvvlk~Grs~~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaGvi~v~~~~el~~~~~~~~~~ 316 (608)
+.++.+. .+||||+--.|-++. ...+..+ +-++.+++...++.==+.....++..
T Consensus 75 ~~~~~al~~G~~vvigttG~s~~-------------------~~~~l~~-aa~~~~v~~s~n~s~g~~~~~~l~~~ 130 (257)
T PRK00048 75 ENLEFALEHGKPLVIGTTGFTEE-------------------QLAELEE-AAKKIPVVIAPNFSIGVNLLMKLAEK 130 (257)
T ss_pred HHHHHHHHcCCCEEEECCCCCHH-------------------HHHHHHH-HhcCCCEEEECcchHHHHHHHHHHHH
Confidence 6555543 799999543333321 1113344 34889999988887666665555543
No 353
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=31.69 E-value=1.3e+02 Score=32.36 Aligned_cols=95 Identities=12% Similarity=-0.042 Sum_probs=50.3
Q ss_pred CCCcEEEEEc--CCch-HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEE
Q 007327 8 SKTTQALFYN--YKQL-PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFIN 84 (608)
Q Consensus 8 ~p~s~avv~g--~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi 84 (608)
+...++|||+ +.|+ +++.|.+..|. ..++....+ ....|+.-.+.|. .+++. ++++.. ..++|+++.
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP---~~~l~~laS-~~saG~~~~~~~~---~~~v~-~~~~~~--~~~~Dvvf~ 72 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFP---VGELYALAS-EESAGETLRFGGK---SVTVQ-DAAEFD--WSQAQLAFF 72 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCC---ceEEEEEEc-cCcCCceEEECCc---ceEEE-eCchhh--ccCCCEEEE
Confidence 4567899953 3344 78877774443 223333322 2233322223221 24443 444421 014899999
Q ss_pred eccChhcHHHHHHHhcCCCCCEEEEecCCC
Q 007327 85 FSSFRSAAASSMAALKQPTIRVVAIIAEGV 114 (608)
Q Consensus 85 ~vp~~~~~~~~le~~~~~gv~~~viis~Gf 114 (608)
++|... .......+.++|++ +|=.|+-|
T Consensus 73 a~p~~~-s~~~~~~~~~~g~~-VIDlS~~f 100 (336)
T PRK08040 73 VAGREA-SAAYAEEATNAGCL-VIDSSGLF 100 (336)
T ss_pred CCCHHH-HHHHHHHHHHCCCE-EEECChHh
Confidence 999874 55666666557775 44456555
No 354
>COG4693 PchG Oxidoreductase (NAD-binding), involved in siderophore biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=31.51 E-value=24 Score=36.99 Aligned_cols=69 Identities=17% Similarity=0.189 Sum_probs=48.1
Q ss_pred eeecccccCCHHHHhhcCCCccEEEEeccChhc---HHHHHHHhcCCCCCEEEEecCC-CCHHHHHHHHHHHHhCCCeE
Q 007327 59 EEIAIPVHSTVEAACAAHPMADVFINFSSFRSA---AASSMAALKQPTIRVVAIIAEG-VPEADTKQLIAYARSNNKVV 133 (608)
Q Consensus 59 ev~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~---~~~~le~~~~~gv~~~viis~G-f~e~~~~~l~~~a~~~g~rv 133 (608)
+-.|+|.|.+++++|+ +||+|-|.|-..-+ -.++-++.-++||.. +-++ .-.++..++++.|++.|.|-
T Consensus 47 h~~GVply~~~eelpd---~idiACVvVrsai~Gg~Gs~larall~RGi~V---lqEHPl~p~di~~l~rlA~rqG~~y 119 (361)
T COG4693 47 HRLGVPLYCEVEELPD---DIDIACVVVRSAIVGGQGSALARALLARGIHV---LQEHPLHPRDIQDLLRLAERQGRRY 119 (361)
T ss_pred HHhCCccccCHhhCCC---CCCeEEEEEeeeeecCCcHHHHHHHHHcccHH---HHhCCCCHHHHHHHHHHHHHhCcEE
Confidence 3589999999999876 58999887765321 145666666677652 2332 22347889999999998763
No 355
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=31.44 E-value=68 Score=33.57 Aligned_cols=48 Identities=19% Similarity=0.190 Sum_probs=27.5
Q ss_pred ccCCHHHHhhcCCCccEEEEeccChh-cHHHHHHHhcCC-CCCEEE-EecCCCC
Q 007327 65 VHSTVEAACAAHPMADVFINFSSFRS-AAASSMAALKQP-TIRVVA-IIAEGVP 115 (608)
Q Consensus 65 ~y~sv~~i~~~~p~vDlavi~vp~~~-~~~~~le~~~~~-gv~~~v-iis~Gf~ 115 (608)
...+.+++.. +.|+++++||... ....+++++... .-+.+| ..|+|.+
T Consensus 69 ~~~~~~~~~~---~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~ 119 (311)
T PRK06130 69 MEAGLAAAVS---GADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLP 119 (311)
T ss_pred EeCCHHHHhc---cCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCC
Confidence 3455665443 4799999999863 244566655431 112233 3566776
No 356
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=31.32 E-value=3.1e+02 Score=28.47 Aligned_cols=116 Identities=9% Similarity=-0.023 Sum_probs=64.6
Q ss_pred CcEEEEEcCCch--HHHHHhhCcccCCCCCCcEEEEeCCCCCCccc-cccCceeecccccCCHHHHhhcCCCccEEEEec
Q 007327 10 TTQALFYNYKQL--PIQRMLDFDFLCGRETPSVAGIINPGAEGFQK-LFFGQEEIAIPVHSTVEAACAAHPMADVFINFS 86 (608)
Q Consensus 10 ~s~avv~g~~~~--~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~-~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi~v 86 (608)
+++-|+||.+.. +.+.|..++ +..++.-.. +.+.... ......+.|.=-..-+.+...+. .+|+.|-+.
T Consensus 3 ~~ilvlGGT~Dar~la~~L~~~~-----~~~~~ss~t--~~g~~l~~~~~~~~~~G~l~~e~l~~~l~e~-~i~llIDAT 74 (257)
T COG2099 3 MRILLLGGTSDARALAKKLAAAP-----VDIILSSLT--GYGAKLAEQIGPVRVGGFLGAEGLAAFLREE-GIDLLIDAT 74 (257)
T ss_pred ceEEEEeccHHHHHHHHHhhccC-----ccEEEEEcc--cccccchhccCCeeecCcCCHHHHHHHHHHc-CCCEEEECC
Confidence 578889886654 777777764 111111111 1111000 01111222222333334444444 499999988
Q ss_pred cChh--cHHHHHHHhcCCCCCEEEEecCCCCH---H-----HHHHHHHHHHhCCCeE
Q 007327 87 SFRS--AAASSMAALKQPTIRVVAIIAEGVPE---A-----DTKQLIAYARSNNKVV 133 (608)
Q Consensus 87 p~~~--~~~~~le~~~~~gv~~~viis~Gf~e---~-----~~~~l~~~a~~~g~rv 133 (608)
.+.. .-..+++.|.+.||+.+..-=.+... . +.++..+.+.+.+-||
T Consensus 75 HPyAa~iS~Na~~aake~gipy~r~eRP~~~~~gd~~~~V~d~~ea~~~~~~~~~rV 131 (257)
T COG2099 75 HPYAARISQNAARAAKETGIPYLRLERPPWAPNGDNWIEVADIEEAAEAAKQLGRRV 131 (257)
T ss_pred ChHHHHHHHHHHHHHHHhCCcEEEEECCccccCCCceEEecCHHHHHHHHhccCCcE
Confidence 7743 23578999999999988775444433 1 6778888888877554
No 357
>PRK06186 hypothetical protein; Validated
Probab=30.97 E-value=72 Score=32.51 Aligned_cols=72 Identities=17% Similarity=0.147 Sum_probs=49.6
Q ss_pred ccccCCHHHHhhc----CCCccEEEEeccChhcHHHHHHHhcCCCCCEEEEecCCCCHH---HHHHHHHHHHhCCCeEEc
Q 007327 63 IPVHSTVEAACAA----HPMADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEA---DTKQLIAYARSNNKVVIG 135 (608)
Q Consensus 63 ~~~y~sv~~i~~~----~p~vDlavi~vp~~~~~~~~le~~~~~gv~~~viis~Gf~e~---~~~~l~~~a~~~g~rvlG 135 (608)
..+|.||-+++.. . ++++-+..+++.. +.+- +.+ +++.+++ +..||+.. -.-...++||++++.++|
T Consensus 14 ~daY~Sv~eal~ha~~~~-~~~~~i~wi~s~~-l~~~-~~l--~~~dgil-vpgGfg~rg~~Gki~ai~~Are~~iP~LG 87 (229)
T PRK06186 14 VTAHQAIPLALDLAAAVL-GLPVDYEWLPTPE-ITDP-EDL--AGFDGIW-CVPGSPYRNDDGALTAIRFARENGIPFLG 87 (229)
T ss_pred cHHHHHHHHHHHHHHHhc-CCeeEEEEEchhh-cCCh-hhH--hhCCeeE-eCCCCCcccHhHHHHHHHHHHHcCCCeEe
Confidence 3589999888752 2 4788888888865 3211 112 3555555 47889876 345668899999999998
Q ss_pred CCcccc
Q 007327 136 PATVGG 141 (608)
Q Consensus 136 PNc~Gi 141 (608)
= |+|+
T Consensus 88 I-ClGm 92 (229)
T PRK06186 88 T-CGGF 92 (229)
T ss_pred e-chhh
Confidence 5 7775
No 358
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=30.95 E-value=2.2e+02 Score=28.33 Aligned_cols=93 Identities=15% Similarity=0.089 Sum_probs=50.3
Q ss_pred CcEEEEEcCCchHHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccC--CHHHHhhcCCCccEEEEecc
Q 007327 10 TTQALFYNYKQLPIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHS--TVEAACAAHPMADVFINFSS 87 (608)
Q Consensus 10 ~s~avv~g~~~~~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~--sv~~i~~~~p~vDlavi~vp 87 (608)
|.|||+ |++|++-..+++.-+ +||.++.+.|-+|.+-. .+.+-++.-.-+|. ++++.+. ..|.+|-++.
T Consensus 1 mKIaiI-gAsG~~Gs~i~~EA~--~RGHeVTAivRn~~K~~---~~~~~~i~q~Difd~~~~a~~l~---g~DaVIsA~~ 71 (211)
T COG2910 1 MKIAII-GASGKAGSRILKEAL--KRGHEVTAIVRNASKLA---ARQGVTILQKDIFDLTSLASDLA---GHDAVISAFG 71 (211)
T ss_pred CeEEEE-ecCchhHHHHHHHHH--hCCCeeEEEEeChHhcc---ccccceeecccccChhhhHhhhc---CCceEEEecc
Confidence 568888 777774444444322 24677777777675542 11122222222232 2234343 3688887765
Q ss_pred Ch-hcHHH--------HHHHhcCCCCCEEEEec
Q 007327 88 FR-SAAAS--------SMAALKQPTIRVVAIIA 111 (608)
Q Consensus 88 ~~-~~~~~--------~le~~~~~gv~~~viis 111 (608)
.. ...+. +++.....|++..+|+-
T Consensus 72 ~~~~~~~~~~~k~~~~li~~l~~agv~RllVVG 104 (211)
T COG2910 72 AGASDNDELHSKSIEALIEALKGAGVPRLLVVG 104 (211)
T ss_pred CCCCChhHHHHHHHHHHHHHHhhcCCeeEEEEc
Confidence 54 11222 66677766888877764
No 359
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=30.84 E-value=54 Score=29.00 Aligned_cols=39 Identities=15% Similarity=0.128 Sum_probs=23.0
Q ss_pred cCCHHHHhhcCCCccEEEEeccChhcHHHHHHHhcCCCCCE
Q 007327 66 HSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQPTIRV 106 (608)
Q Consensus 66 y~sv~~i~~~~p~vDlavi~vp~~~~~~~~le~~~~~gv~~ 106 (608)
+..+.+...+. ++|++|| =|..--..-+.+.+.+.|++.
T Consensus 51 ~~~l~~~a~~~-~idlvvv-GPE~pL~~Gl~D~l~~~gi~v 89 (100)
T PF02844_consen 51 PEELADFAKEN-KIDLVVV-GPEAPLVAGLADALRAAGIPV 89 (100)
T ss_dssp HHHHHHHHHHT-TESEEEE-SSHHHHHTTHHHHHHHTT-CE
T ss_pred HHHHHHHHHHc-CCCEEEE-CChHHHHHHHHHHHHHCCCcE
Confidence 33444433344 5999987 444433456778888888873
No 360
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=30.67 E-value=89 Score=28.91 Aligned_cols=48 Identities=13% Similarity=0.119 Sum_probs=34.9
Q ss_pred HHHHHHhcCCCCCEEEEecC---CC--------------CHHHHHHHHHHHHhCCCeEEcCCccc
Q 007327 93 ASSMAALKQPTIRVVAIIAE---GV--------------PEADTKQLIAYARSNNKVVIGPATVG 140 (608)
Q Consensus 93 ~~~le~~~~~gv~~~viis~---Gf--------------~e~~~~~l~~~a~~~g~rvlGPNc~G 140 (608)
...++.+.+.++..++|++. |+ ...+..++++.|++.|||++.==|.+
T Consensus 3 ~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 3 EQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred HHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEeee
Confidence 34556666778888888764 21 21267899999999999999876666
No 361
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=30.61 E-value=95 Score=32.76 Aligned_cols=52 Identities=15% Similarity=0.192 Sum_probs=35.0
Q ss_pred cccccCCHHHHhhcCCCccEEEEeccChhcHHHHHHHhcC-C-C-CCEEEEecCCCCH
Q 007327 62 AIPVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQ-P-T-IRVVAIIAEGVPE 116 (608)
Q Consensus 62 G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~~~~le~~~~-~-g-v~~~viis~Gf~e 116 (608)
+++.+.+..+.... +.|+.+|+||+.. +..+++.+.. . + -..+++++.|+..
T Consensus 57 ~i~~~~~~~~~~~~--~~Dliiiavks~~-~~~~l~~l~~~~l~~~~~vv~~~nGi~~ 111 (326)
T PRK14620 57 NISVKSAIDEVLSD--NATCIILAVPTQQ-LRTICQQLQDCHLKKNTPILICSKGIEK 111 (326)
T ss_pred CeEEeCCHHHHHhC--CCCEEEEEeCHHH-HHHHHHHHHHhcCCCCCEEEEEEcCeeC
Confidence 34566666665422 4799999999986 7788887763 1 1 2246777889854
No 362
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=30.59 E-value=1.3e+02 Score=33.92 Aligned_cols=136 Identities=18% Similarity=0.151 Sum_probs=88.4
Q ss_pred HHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCeEE---------------cCCcccccccCc--ccccccCCcc
Q 007327 94 SSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVI---------------GPATVGGIQAGA--FKIGDTAGTI 156 (608)
Q Consensus 94 ~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~rvl---------------GPNc~Gi~~~~~--~~l~~~~~~~ 156 (608)
.+.|+. ..|..++++|.+=+.+....+|.++|++.||-.+ |+.-+||-|-+- +.+. ++.+
T Consensus 124 QI~ea~-~~GADavLLI~~~L~~~~l~~l~~~a~~lGl~~lvEvh~~~El~~al~~~a~iiGiNnRdL~t~~vd-~~~~- 200 (454)
T PRK09427 124 QIYLAR-YYGADAILLMLSVLDDEQYRQLAAVAHSLNMGVLTEVSNEEELERAIALGAKVIGINNRNLRDLSID-LNRT- 200 (454)
T ss_pred HHHHHH-HcCCCchhHHHHhCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHhCCCCEEEEeCCCCccceEC-HHHH-
Confidence 344544 4899999999988888888899999999998755 888889766543 1110 0011
Q ss_pred cccccccCCCCCcEEEEecChhHHHHHHHHHHhcCCceeEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCcc
Q 007327 157 DNIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRD 236 (608)
Q Consensus 157 ~~~~p~~~~~~G~valvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~T~~I~ly~E~g~~~ 236 (608)
....| .-|+.+-+||-||--+.+=+..+.. | ...+=+|......-+..+.+.-|... .+|++ |+++
T Consensus 201 ~~l~~---~ip~~~~~vseSGI~t~~d~~~~~~---~-~davLiG~~lm~~~d~~~~~~~L~~~-~vKIC------Git~ 266 (454)
T PRK09427 201 RELAP---LIPADVIVISESGIYTHAQVRELSP---F-ANGFLIGSSLMAEDDLELAVRKLILG-ENKVC------GLTR 266 (454)
T ss_pred HHHHh---hCCCCcEEEEeCCCCCHHHHHHHHh---c-CCEEEECHHHcCCCCHHHHHHHHhcc-ccccC------CCCC
Confidence 11111 3467899999999877665544532 3 45556676654455666666666442 44544 7888
Q ss_pred HHHHHHHHHh
Q 007327 237 EYSLVEALKQ 246 (608)
Q Consensus 237 ~~~f~~~~r~ 246 (608)
.+....+++.
T Consensus 267 ~eda~~a~~~ 276 (454)
T PRK09427 267 PQDAKAAYDA 276 (454)
T ss_pred HHHHHHHHhC
Confidence 7777666654
No 363
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=30.44 E-value=5.3e+02 Score=25.29 Aligned_cols=173 Identities=8% Similarity=0.018 Sum_probs=83.2
Q ss_pred ccCCHHHHhhcCCCccEEEEeccChh-cHHHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCeEEcCCccc---
Q 007327 65 VHSTVEAACAAHPMADVFINFSSFRS-AAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVG--- 140 (608)
Q Consensus 65 ~y~sv~~i~~~~p~vDlavi~vp~~~-~~~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~rvlGPNc~G--- 140 (608)
.+..+.+...+.+ .++.+....... .....++.....++.+++++..... ....+.+++.|+.++-.+...
T Consensus 17 ~~~~i~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~----~~~~~~l~~~~iPvv~~~~~~~~~ 91 (268)
T cd06273 17 VIQAFQETLAAHG-YTLLVASSGYDLDREYAQARKLLERGVDGLALIGLDHS----PALLDLLARRGVPYVATWNYSPDS 91 (268)
T ss_pred HHHHHHHHHHHCC-CEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC----HHHHHHHHhCCCCEEEEcCCCCCC
Confidence 4445666555442 666553322111 1224556666678988887654322 234456677899887765421
Q ss_pred ---ccccCcccccccCCcccccccccCCCCCcEEEEecChh-------HHHHHHHHHHhcCCcee--EEeecCCCCCCCC
Q 007327 141 ---GIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGG-------MSNELYNTIARVTDGIY--EGIAIGGDVFPGS 208 (608)
Q Consensus 141 ---i~~~~~~~l~~~~~~~~~~~p~~~~~~G~valvSQSG~-------l~~~~~~~~~~~g~G~s--~~vs~Gn~~~~dv 208 (608)
.+..+....+ ......+- ....++|++++.+.. ....+.+.+.++++-+. .+++..... +-
T Consensus 92 ~~~~v~~d~~~~~---~~~~~~l~--~~g~~~i~~i~~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~~~~~~~~~--~~ 164 (268)
T cd06273 92 PYPCVGFDNREAG---RLAARHLI--ALGHRRIAMIFGPTQGNDRARARRAGVRAALAEAGLELPELWQVEAPYSI--AD 164 (268)
T ss_pred CCCEEEeChHHHH---HHHHHHHH--HCCCCeEEEEeccccCCccHHHHHHHHHHHHHHcCCCCCHHHeeeCCCcH--HH
Confidence 0111100000 00000000 114568999974321 12334456666665432 233322222 22
Q ss_pred CHHHHHHHhhcCCCccEEEEEEecCCccHHHHHHHHHhCCCCCC
Q 007327 209 TLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKP 252 (608)
Q Consensus 209 ~~~d~l~~l~~Dp~T~~I~ly~E~g~~~~~~f~~~~r~a~~~KP 252 (608)
....+.++|...+..++|..- +-.....+++++++...+.|
T Consensus 165 ~~~~~~~~l~~~~~~~ai~~~---~~~~a~~~~~~l~~~g~~~p 205 (268)
T cd06273 165 GRAALRQLLEQPPRPTAVICG---NDVLALGALYEARRLGLSVP 205 (268)
T ss_pred HHHHHHHHHcCCCCCCEEEEc---ChHHHHHHHHHHHHcCCCCC
Confidence 233344555556777777653 33344567788877555545
No 364
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=30.39 E-value=93 Score=31.80 Aligned_cols=54 Identities=19% Similarity=0.304 Sum_probs=33.0
Q ss_pred HHHHHHHhhcCCCccEEEEEEecCCc-----------------cHHHHH----HHHHhC-CCCCCEEEEEeCCCccC
Q 007327 210 LSDHILRFNNIPQVKMMVVLGELGGR-----------------DEYSLV----EALKQG-KVNKPVVAWVSGTCARL 264 (608)
Q Consensus 210 ~~d~l~~l~~Dp~T~~I~ly~E~g~~-----------------~~~~f~----~~~r~a-~~~KPVvvlk~Grs~~g 264 (608)
+.+.++.+.+||++++|++..+ |-+ +.++|. +..++. ...||||+..-|..-.|
T Consensus 36 l~~~~~~~~~d~~v~~vvl~g~-g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg 111 (260)
T PRK05809 36 LDTVLDDIENDDNVYAVILTGA-GEKAFVAGADISEMKDLNEEEGRKFGLLGNKVFRKLENLDKPVIAAINGFALGG 111 (260)
T ss_pred HHHHHHHHhcCCCcEEEEEEcC-CCCceeeCcChHhHhccChHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeecH
Confidence 4566667777888888888877 510 011121 222333 36899999987776543
No 365
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=30.27 E-value=5.9e+02 Score=25.78 Aligned_cols=44 Identities=11% Similarity=0.125 Sum_probs=32.7
Q ss_pred HHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCe---EEcCCc
Q 007327 93 ASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKV---VIGPAT 138 (608)
Q Consensus 93 ~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~r---vlGPNc 138 (608)
+..++.|.+.|+..+++.--.+ +..+++.+.++++|+. ++-|++
T Consensus 94 ~~fi~~~~~aG~~giiipDl~~--ee~~~~~~~~~~~g~~~i~~i~P~T 140 (242)
T cd04724 94 ERFLRDAKEAGVDGLIIPDLPP--EEAEEFREAAKEYGLDLIFLVAPTT 140 (242)
T ss_pred HHHHHHHHHCCCcEEEECCCCH--HHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 6788999999999888854333 3567899999999985 345543
No 366
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=30.18 E-value=2.9e+02 Score=31.25 Aligned_cols=47 Identities=15% Similarity=0.306 Sum_probs=31.9
Q ss_pred HHHHHHHhcCCCCCEEEEecC----C--CCHHHHHHHHHHHHhCCCeEEcCCcc
Q 007327 92 AASSMAALKQPTIRVVAIIAE----G--VPEADTKQLIAYARSNNKVVIGPATV 139 (608)
Q Consensus 92 ~~~~le~~~~~gv~~~viis~----G--f~e~~~~~l~~~a~~~g~rvlGPNc~ 139 (608)
++++.+.+ ..+.|.+++.+- | ++....++|+++|+++++.|+==++.
T Consensus 271 ~~~l~~~~-~~~~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y 323 (517)
T PRK13355 271 IDDIRSKI-TSRTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIY 323 (517)
T ss_pred HHHHHHhc-CcCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhh
Confidence 34444444 467888877763 3 45567889999999999887744443
No 367
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=30.14 E-value=4.9e+02 Score=29.17 Aligned_cols=163 Identities=15% Similarity=0.132 Sum_probs=86.7
Q ss_pred EEeccChhcHHHHHHHhcCC--CCCEEEEecCCCCHH---HHHHHHHHHHh--------CCCeEEcCCcccccccCcccc
Q 007327 83 INFSSFRSAAASSMAALKQP--TIRVVAIIAEGVPEA---DTKQLIAYARS--------NNKVVIGPATVGGIQAGAFKI 149 (608)
Q Consensus 83 vi~vp~~~~~~~~le~~~~~--gv~~~viis~Gf~e~---~~~~l~~~a~~--------~g~rvlGPNc~Gi~~~~~~~l 149 (608)
+|+=-.+. +...++.+.++ ..+.+.|+|++.+|. |.+.+.+.+++ .+++++-=||.|+-.....+.
T Consensus 66 ~VfGG~~~-L~~~I~~~~~~~~~p~~I~V~tTC~~eiIGDDi~~vv~~~~~~~~~e~~~~~~~vi~v~tpgF~Gs~~~G~ 144 (454)
T cd01973 66 AVFGGAKR-VEEGVLVLARRYPDLRVIPIITTCSTEIIGDDIEGVIRKLNEALKEEFPDREVHLIPVHTPSFKGSMVTGY 144 (454)
T ss_pred eEECcHHH-HHHHHHHHHHhcCCCCEEEEECCchHhhhccCHHHHHHHHHhhhhhccCCCCCeEEEeeCCCcCCCHHHHH
Confidence 33344443 45555554443 367889999999997 44555444432 278888889988864321010
Q ss_pred cccCCcccccccccCCCCCcEEEEe--cChhHHHHHHHHHHhcCCceeEEeecCCCCC------------CCCCHHHHHH
Q 007327 150 GDTAGTIDNIIHCKLYRPGSVGFVS--KSGGMSNELYNTIARVTDGIYEGIAIGGDVF------------PGSTLSDHIL 215 (608)
Q Consensus 150 ~~~~~~~~~~~p~~~~~~G~valvS--QSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~------------~dv~~~d~l~ 215 (608)
....-.+...+.....+++.|-|+. ++.+=..++-..+.+-|+-+..+..++ ..+ .+.++.|+
T Consensus 145 ~~a~~ali~~~~~~~~~~~~VNii~~~~~~~D~~ei~~lL~~~Gl~v~~~~d~~-~~d~~~~~~~~~~~~g~~~~~~i-- 221 (454)
T cd01973 145 DEAVRSVVKTIAKKGAPSGKLNVFTGWVNPGDVVELKHYLSEMDVEANILMDTE-DFDSPMLPDKSAVTHGNTTIEDI-- 221 (454)
T ss_pred HHHHHHHHHHhcccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCCEEEeeccc-cccCCCCCcccccCCCCCCHHHH--
Confidence 0000011111111222467899985 443334677777888888877654332 110 02334443
Q ss_pred HhhcCCCccEEEEEEecCCccHHHHHHHHHhCCCCCCEEE
Q 007327 216 RFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVA 255 (608)
Q Consensus 216 ~l~~Dp~T~~I~ly~E~g~~~~~~f~~~~r~a~~~KPVvv 255 (608)
.+=++-+.-++. +-..+..+.+.+++ +.+.|.+.
T Consensus 222 --~~~~~A~~niv~---~~~~~~~~A~~Le~-~fGiPyi~ 255 (454)
T cd01973 222 --ADSANAIATIAL---ARYEGGKAAEFLQK-KFDVPAIL 255 (454)
T ss_pred --HHhhhCcEEEEE---ChhhhHHHHHHHHH-HHCCCeec
Confidence 444555554444 22345667777665 35778764
No 368
>PRK07681 aspartate aminotransferase; Provisional
Probab=30.14 E-value=3.4e+02 Score=29.31 Aligned_cols=70 Identities=14% Similarity=0.092 Sum_probs=40.1
Q ss_pred ccccCCHHHHhhcCCCccEEEEeccChh----cHHHHHHHhcCCCCCEEEEecC----C--CCHHHHHHHHHHHHhCCCe
Q 007327 63 IPVHSTVEAACAAHPMADVFINFSSFRS----AAASSMAALKQPTIRVVAIIAE----G--VPEADTKQLIAYARSNNKV 132 (608)
Q Consensus 63 ~~~y~sv~~i~~~~p~vDlavi~vp~~~----~~~~~le~~~~~gv~~~viis~----G--f~e~~~~~l~~~a~~~g~r 132 (608)
-|+|+....+.... .+++.-+.+.... .++++.+++. .++|.+++.+- | +++...++|.++|+++++.
T Consensus 124 ~P~y~~~~~~~~~~-G~~~~~v~~~~~~~~~~d~~~l~~~~~-~~~k~v~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~~ 201 (399)
T PRK07681 124 DPGYTAYETGIQMA-GATSYYMPLKKENDFLPDLELIPEEIA-DKAKMMILNFPGNPVPAMAHEDFFKEVIAFAKKHNII 201 (399)
T ss_pred CCCccchHHHHHhc-CCEEEEEecCCCCCCcCCHHHHHHhcc-ccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeE
Confidence 35666655544433 2454444432221 2445555554 57776665532 3 3445678899999999988
Q ss_pred EE
Q 007327 133 VI 134 (608)
Q Consensus 133 vl 134 (608)
|+
T Consensus 202 iI 203 (399)
T PRK07681 202 VV 203 (399)
T ss_pred EE
Confidence 76
No 369
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=30.13 E-value=64 Score=34.76 Aligned_cols=93 Identities=15% Similarity=0.220 Sum_probs=62.0
Q ss_pred HHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCeEE----------------cCCcccccccCc--ccccccCCcccc
Q 007327 97 AALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVI----------------GPATVGGIQAGA--FKIGDTAGTIDN 158 (608)
Q Consensus 97 e~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~rvl----------------GPNc~Gi~~~~~--~~l~~~~~~~~~ 158 (608)
.++...|..++.+|.+=+.+.+.++|.++|++.||-++ |+.-+||-|-+- +.+. ++.+. .
T Consensus 197 ~eAr~~GADAVLLIaaiL~~~~L~~l~~~A~~LGme~LVEVH~~~ElerAl~~~ga~iIGINNRdL~Tf~vD-l~~t~-~ 274 (338)
T PLN02460 197 YYARSKGADAILLIAAVLPDLDIKYMLKICKSLGMAALIEVHDEREMDRVLGIEGVELIGINNRSLETFEVD-ISNTK-K 274 (338)
T ss_pred HHHHHcCCCcHHHHHHhCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCcceEC-HHHHH-H
Confidence 34445899999999998888888999999999998643 888899877543 1110 01111 1
Q ss_pred ccccc---CCCCCcEEEEecChhHHHHHHHHHHhcC
Q 007327 159 IIHCK---LYRPGSVGFVSKSGGMSNELYNTIARVT 191 (608)
Q Consensus 159 ~~p~~---~~~~G~valvSQSG~l~~~~~~~~~~~g 191 (608)
..|.. ..+|-++-+||-||--+.+=+..+.+.|
T Consensus 275 L~~~~~~~~i~~~~~~~VsESGI~t~~Dv~~l~~~G 310 (338)
T PLN02460 275 LLEGERGEQIREKGIIVVGESGLFTPDDVAYVQNAG 310 (338)
T ss_pred HhhhccccccCCCCeEEEECCCCCCHHHHHHHHHCC
Confidence 11200 1234678899999988777666666554
No 370
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=29.74 E-value=88 Score=31.84 Aligned_cols=53 Identities=19% Similarity=0.386 Sum_probs=30.3
Q ss_pred HHHHHHHhhcCCCccEEEEEEecCC-----ccH------------HHHHHHHHhCC-CCCCEEEEEeCCCcc
Q 007327 210 LSDHILRFNNIPQVKMMVVLGELGG-----RDE------------YSLVEALKQGK-VNKPVVAWVSGTCAR 263 (608)
Q Consensus 210 ~~d~l~~l~~Dp~T~~I~ly~E~g~-----~~~------------~~f~~~~r~a~-~~KPVvvlk~Grs~~ 263 (608)
+.+.++.+..||++|+|++..+ |- .|- +.|.+..++.. ..||||+..-|..-.
T Consensus 32 l~~a~~~~~~d~~vr~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~G 102 (248)
T PRK06072 32 FISKLKQINADPKIRVVIVTGE-GRAFCVGADLSEFAPDFAIDLRETFYPIIREIRFSDKIYISAINGVTAG 102 (248)
T ss_pred HHHHHHHHhcCCCeeEEEEECC-CCCcccCcCHHHHhhhhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeh
Confidence 3455566666777777777665 41 010 11222333332 689999998887654
No 371
>KOG3505 consensus Mitochondrial/chloroplast ribosomal protein L33-like [Translation, ribosomal structure and biogenesis]
Probab=29.62 E-value=59 Score=25.22 Aligned_cols=42 Identities=17% Similarity=0.128 Sum_probs=34.6
Q ss_pred HHHHHHhcCCceeEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEe
Q 007327 183 LYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGE 231 (608)
Q Consensus 183 ~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~T~~I~ly~E 231 (608)
++..+..+|-||+++.|.-.-+ +-+.+..-||-++-=+|+-|
T Consensus 10 lirlvStAgtGf~~~~s~~k~~-------~klt~~kYDPvVkr~VLF~E 51 (55)
T KOG3505|consen 10 LIRLVSTAGTGFFYVKSRKKLA-------EKLTFRKYDPVVKRHVLFTE 51 (55)
T ss_pred HHHHHHhcccceEEEEeccccc-------ccceeeecCchheeeeeeeh
Confidence 3445667899999999775554 78889999999999999988
No 372
>PRK00877 hisD bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed
Probab=29.59 E-value=4.4e+02 Score=29.44 Aligned_cols=72 Identities=11% Similarity=0.096 Sum_probs=46.5
Q ss_pred HHHHHHHhhcCCCccEEEEEEecCCccHHHHHHHHHhCC-CCCCEEEEEeCCCccCcccccccCCCCCcCCCCcchHHHH
Q 007327 210 LSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGK-VNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAK 288 (608)
Q Consensus 210 ~~d~l~~l~~Dp~T~~I~ly~E~g~~~~~~f~~~~r~a~-~~KPVvvlk~Grs~~g~~~~aa~sHtgalag~~~~~a~~~ 288 (608)
.+|+|.-.++||+..+|++--. +++++.+.+.- +. -....+ . ...
T Consensus 250 AaDLLaQAEHd~~a~aiLvT~s------~~la~~V~~~v~~q-----------------l~~l~r-------~----~ia 295 (425)
T PRK00877 250 AADLLSQAEHDPDAQSILVTTS------EELAEAVAAEVERQ-----------------LATLPR-------A----EIA 295 (425)
T ss_pred HHHHHHHhccCCCCcEEEEECC------HHHHHHHHHHHHHH-----------------HHhCCh-------H----HHH
Confidence 4688999999999999987633 55555544311 00 001111 1 455
Q ss_pred HHHHHH-cCCcccCCHHHHHHHHHHHHH
Q 007327 289 NQALRD-AGAVVPTSYEAFESAIKETFE 315 (608)
Q Consensus 289 ~a~~~q-aGvi~v~~~~el~~~~~~~~~ 315 (608)
...+++ ..++.|+|++|.++++..+..
T Consensus 296 ~~sl~~~g~iivv~~leeai~~~N~~AP 323 (425)
T PRK00877 296 RASLEGQGAIILVDDLEEAIELSNAYAP 323 (425)
T ss_pred HHHHHhCCEEEEECCHHHHHHHHHhhCh
Confidence 667777 457789999999998876654
No 373
>PRK07550 hypothetical protein; Provisional
Probab=29.56 E-value=4e+02 Score=28.50 Aligned_cols=76 Identities=17% Similarity=0.116 Sum_probs=44.5
Q ss_pred ccccCCHHHHhhcCCCccEEEEeccChh----cHHHHHHHhcCCCCCEEEEecC----C--CCHHHHHHHHHHHHhCCCe
Q 007327 63 IPVHSTVEAACAAHPMADVFINFSSFRS----AAASSMAALKQPTIRVVAIIAE----G--VPEADTKQLIAYARSNNKV 132 (608)
Q Consensus 63 ~~~y~sv~~i~~~~p~vDlavi~vp~~~----~~~~~le~~~~~gv~~~viis~----G--f~e~~~~~l~~~a~~~g~r 132 (608)
-|+|.....+.... ..++..+.+-... ..+++.+.+ +.+.+.+++++. | ++....++|.++|+++|+.
T Consensus 121 ~p~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~~~~~l~~~~-~~~~~~v~~~~P~NPtG~~~~~~~~~~i~~~~~~~~~~ 198 (386)
T PRK07550 121 LPWYFNHKMWLDML-GIRPVYLPCDEGPGLLPDPAAAEALI-TPRTRAIALVTPNNPTGVVYPPELLHELYDLARRHGIA 198 (386)
T ss_pred CCCCcchHHHHHhc-CCEEEEEecCCCcCCCCCHHHHHHHh-cccCcEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCeE
Confidence 35666655544433 2555544432111 233444444 467888777653 3 4555788999999999998
Q ss_pred EEcCCccc
Q 007327 133 VIGPATVG 140 (608)
Q Consensus 133 vlGPNc~G 140 (608)
|+==++.+
T Consensus 199 iI~Dd~y~ 206 (386)
T PRK07550 199 LILDETYR 206 (386)
T ss_pred EEEeccch
Confidence 86555544
No 374
>PF13684 Dak1_2: Dihydroxyacetone kinase family
Probab=29.56 E-value=3e+02 Score=29.31 Aligned_cols=77 Identities=12% Similarity=0.066 Sum_probs=56.3
Q ss_pred cCCceeEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCccHHHHHHHHHhCCCCCCEEEEEeCCCccCccccc
Q 007327 190 VTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCARLFKSEV 269 (608)
Q Consensus 190 ~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~T~~I~ly~E~g~~~~~~f~~~~r~a~~~KPVvvlk~Grs~~g~~~~a 269 (608)
+.+|+..+|+-|-.. .=+..|+++.+..-+..++|+|= .-++-..-++.+.+..+.|.|+++.+.+-..| -.|
T Consensus 113 ~~~Gv~~vi~ggqt~--nPS~~dl~~Ai~~~~a~~VivLP---Nn~ni~~aa~qa~~~~~~~~v~VipTks~~qG--laA 185 (313)
T PF13684_consen 113 RSLGVDVVISGGQTM--NPSTEDLLNAIEKVGADEVIVLP---NNKNIILAAEQAARLSEDKNVVVIPTKSIPQG--LAA 185 (313)
T ss_pred HhCCCeEEEeCCCCC--CCCHHHHHHHHHhCCCCeEEEEe---CCchHHHHHHHHHHHhcCCCEEEEecCCHHHH--HHH
Confidence 478999999999776 66788999999999999999876 34444444445555555667888887777776 344
Q ss_pred ccCC
Q 007327 270 QFGH 273 (608)
Q Consensus 270 a~sH 273 (608)
...|
T Consensus 186 l~~~ 189 (313)
T PF13684_consen 186 LLVF 189 (313)
T ss_pred HHHh
Confidence 4444
No 375
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=29.35 E-value=59 Score=29.07 Aligned_cols=45 Identities=9% Similarity=0.195 Sum_probs=28.0
Q ss_pred cHHHHHHHhcCCCCCEEEEecCCCCHH-HHHHHHHHHHhCCCeEEcCCc
Q 007327 91 AAASSMAALKQPTIRVVAIIAEGVPEA-DTKQLIAYARSNNKVVIGPAT 138 (608)
Q Consensus 91 ~~~~~le~~~~~gv~~~viis~Gf~e~-~~~~l~~~a~~~g~rvlGPNc 138 (608)
.++.+++.+.+.|+-.+. .|+.-. .-.++.+.+.+.|+.++||+.
T Consensus 62 ~~e~I~~ia~~~g~~~i~---pGyg~lse~~~fa~~~~~~gi~fiGp~~ 107 (110)
T PF00289_consen 62 NIEAIIDIARKEGADAIH---PGYGFLSENAEFAEACEDAGIIFIGPSP 107 (110)
T ss_dssp SHHHHHHHHHHTTESEEE---STSSTTTTHHHHHHHHHHTT-EESSS-H
T ss_pred cHHHHhhHhhhhcCcccc---cccchhHHHHHHHHHHHHCCCEEECcCh
Confidence 467888888876554322 333221 245677777799999999973
No 376
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=29.08 E-value=2.7e+02 Score=32.36 Aligned_cols=35 Identities=14% Similarity=0.118 Sum_probs=24.1
Q ss_pred CccEEEEeccChh---------------cHHHHHHHhcCCCCCEEEEecC
Q 007327 78 MADVFINFSSFRS---------------AAASSMAALKQPTIRVVAIIAE 112 (608)
Q Consensus 78 ~vDlavi~vp~~~---------------~~~~~le~~~~~gv~~~viis~ 112 (608)
.+|.+|.++.... ....++++|.+.|++.+|.+|+
T Consensus 159 giDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSS 208 (576)
T PLN03209 159 NASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTS 208 (576)
T ss_pred CCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEcc
Confidence 4898777653321 1345678888789999988887
No 377
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=29.02 E-value=2.4e+02 Score=30.18 Aligned_cols=112 Identities=12% Similarity=0.041 Sum_probs=61.4
Q ss_pred CCCCcEEEEE-cCCch-HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEE
Q 007327 7 FSKTTQALFY-NYKQL-PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFIN 84 (608)
Q Consensus 7 ~~p~s~avv~-g~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi 84 (608)
++=+++.|+| |--|+ +.+.+. +| |.+++|--.+|. .. .+-.+--.|-++.|+.. +.|..++
T Consensus 144 l~gktvGIiG~GrIG~avA~r~~--~F----gm~v~y~~~~~~-~~-------~~~~~~~~y~~l~ell~---~sDii~l 206 (324)
T COG1052 144 LRGKTLGIIGLGRIGQAVARRLK--GF----GMKVLYYDRSPN-PE-------AEKELGARYVDLDELLA---ESDIISL 206 (324)
T ss_pred CCCCEEEEECCCHHHHHHHHHHh--cC----CCEEEEECCCCC-hH-------HHhhcCceeccHHHHHH---hCCEEEE
Confidence 3446788885 33344 555555 55 444554332222 10 12222245556999877 4799999
Q ss_pred eccChhcHHHHH--HHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCeEEc
Q 007327 85 FSSFRSAAASSM--AALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIG 135 (608)
Q Consensus 85 ~vp~~~~~~~~l--e~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~rvlG 135 (608)
.+|.....-.++ +.....+-..++|-++-=+-.+++.|.+..++..+.=.|
T Consensus 207 ~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~gag 259 (324)
T COG1052 207 HCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAG 259 (324)
T ss_pred eCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCcceEE
Confidence 999864332222 222222333444445433334889999998887766544
No 378
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=28.81 E-value=1.7e+02 Score=31.38 Aligned_cols=36 Identities=11% Similarity=-0.044 Sum_probs=26.1
Q ss_pred CccEEEEeccChhcHHHHHHHhcCCCCCEEEEecCCCC
Q 007327 78 MADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVP 115 (608)
Q Consensus 78 ~vDlavi~vp~~~~~~~~le~~~~~gv~~~viis~Gf~ 115 (608)
++|+++.++|... .....+.+.++|++ +|..|+-|.
T Consensus 76 ~~DvVf~a~p~~~-s~~~~~~~~~~G~~-vIDls~~fR 111 (349)
T PRK08664 76 DVDIVFSALPSDV-AGEVEEEFAKAGKP-VFSNASAHR 111 (349)
T ss_pred CCCEEEEeCChhH-HHHHHHHHHHCCCE-EEECCchhc
Confidence 4899999999874 56666777778887 455566553
No 379
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=28.75 E-value=4.3e+02 Score=29.31 Aligned_cols=162 Identities=12% Similarity=0.067 Sum_probs=81.6
Q ss_pred cChhcHHHHHHHhcCCCCCEEEEecCCCCHH---HHHHHHHHHHhC-----CCeEEcCCcccccccCccccc-ccCCccc
Q 007327 87 SFRSAAASSMAALKQPTIRVVAIIAEGVPEA---DTKQLIAYARSN-----NKVVIGPATVGGIQAGAFKIG-DTAGTID 157 (608)
Q Consensus 87 p~~~~~~~~le~~~~~gv~~~viis~Gf~e~---~~~~l~~~a~~~-----g~rvlGPNc~Gi~~~~~~~l~-~~~~~~~ 157 (608)
..+....++.+.+.+...+.++|+|+..+|. |.+.+.+.+++. +++|+.=||.|+-.....+.. .+.+-..
T Consensus 69 g~~~L~~ai~~~~~~~~p~~I~v~ttC~~~iiGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~gs~~~G~~~a~~al~~ 148 (435)
T cd01974 69 GQNNLIDGLKNAYAVYKPDMIAVSTTCMAEVIGDDLNAFIKNAKNKGSIPADFPVPFANTPSFVGSHITGYDNMVKGILT 148 (435)
T ss_pred cHHHHHHHHHHHHHhcCCCEEEEeCCchHhhhhccHHHHHHHHHHhccCCCCCeEEEecCCCCccCHHHHHHHHHHHHHH
Confidence 3344334444444444788899999999998 455555544433 788999999888643220100 0000000
Q ss_pred cccccc--CCCCCcEEEEecC--hhH-HHHHHHHHHhcCCceeEEeecCCCC----------C-CCCCHHHHHHHhhcCC
Q 007327 158 NIIHCK--LYRPGSVGFVSKS--GGM-SNELYNTIARVTDGIYEGIAIGGDV----------F-PGSTLSDHILRFNNIP 221 (608)
Q Consensus 158 ~~~p~~--~~~~G~valvSQS--G~l-~~~~~~~~~~~g~G~s~~vs~Gn~~----------~-~dv~~~d~l~~l~~Dp 221 (608)
...+.. ...++.|-++... ..- ..++...+.+.|+....+-.+.... + .+.++.|+ .+=+
T Consensus 149 ~l~~~~~~~~~~~~VNli~~~~~~~d~~~el~~lL~~~Gl~~~~~~d~s~~~d~~~~~~~~~~~gg~~~~~i----~~~~ 224 (435)
T cd01974 149 HLTEGSGGAGKNGKLNIIPGFDTYAGNMREIKRLLELMGVDYTILPDTSDVLDTPADGEYRMYPGGTTLEEL----KDAG 224 (435)
T ss_pred HHhcccCCCCCCCeEEEECCCCCCcchHHHHHHHHHHcCCCEEEecccccccCCCCCCCccccCCCCCHHHH----Hhhc
Confidence 111111 1357789888522 111 4567777777777764321111100 0 03344554 3445
Q ss_pred CccEEEEEEecCCccHHHHHHHHHhCCCCCCEEEE
Q 007327 222 QVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAW 256 (608)
Q Consensus 222 ~T~~I~ly~E~g~~~~~~f~~~~r~a~~~KPVvvl 256 (608)
+-+.-++.. -..+..+.+.+++ +.+.|.+.+
T Consensus 225 ~A~~niv~~---~~~~~~~a~~Le~-~~giP~~~~ 255 (435)
T cd01974 225 NAKATLALQ---EYATEKTAKFLEK-KCKVPVETL 255 (435)
T ss_pred cCcEEEEEC---ccccHHHHHHHHH-HhCCCeeec
Confidence 555444432 1234556666554 357785543
No 380
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=28.67 E-value=1.2e+02 Score=23.92 Aligned_cols=41 Identities=10% Similarity=0.052 Sum_probs=28.1
Q ss_pred HHHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCeE
Q 007327 92 AASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVV 133 (608)
Q Consensus 92 ~~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~rv 133 (608)
+.+.++.+.++|.+.+.+ |..-.-....++.+.+++.|+.+
T Consensus 17 ~~~~~~~a~~~g~~~v~i-TDh~~~~~~~~~~~~~~~~gi~~ 57 (67)
T smart00481 17 PEELVKRAKELGLKAIAI-TDHGNLFGAVEFYKAAKKAGIKP 57 (67)
T ss_pred HHHHHHHHHHcCCCEEEE-eeCCcccCHHHHHHHHHHcCCeE
Confidence 567888888899986554 76543323456777788888764
No 381
>PRK06207 aspartate aminotransferase; Provisional
Probab=28.59 E-value=2.9e+02 Score=30.00 Aligned_cols=45 Identities=22% Similarity=0.202 Sum_probs=29.0
Q ss_pred HHHHHHhcCCCCCEEEEecCC------CCHHHHHHHHHHHHhCCCeEEcCCc
Q 007327 93 ASSMAALKQPTIRVVAIIAEG------VPEADTKQLIAYARSNNKVVIGPAT 138 (608)
Q Consensus 93 ~~~le~~~~~gv~~~viis~G------f~e~~~~~l~~~a~~~g~rvlGPNc 138 (608)
+.+.+.+. .++|.+++.+-. ++....++|.++|+++|+.|+==++
T Consensus 169 ~~l~~~~~-~~~k~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~ 219 (405)
T PRK06207 169 DQLEEAFK-AGVRVFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQL 219 (405)
T ss_pred HHHHHhhh-hcCeEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecc
Confidence 44444444 678866665433 3444678899999999988773333
No 382
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=28.50 E-value=1.7e+02 Score=24.72 Aligned_cols=40 Identities=23% Similarity=0.170 Sum_probs=32.2
Q ss_pred HHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCeE
Q 007327 93 ASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVV 133 (608)
Q Consensus 93 ~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~rv 133 (608)
..+++++. +|--..|++++-.++...+.+..+|+++++.+
T Consensus 17 ~~v~kai~-~gkaklViiA~D~~~~~~~~i~~~c~~~~Vp~ 56 (82)
T PRK13602 17 KQTVKALK-RGSVKEVVVAEDADPRLTEKVEALANEKGVPV 56 (82)
T ss_pred HHHHHHHH-cCCeeEEEEECCCCHHHHHHHHHHHHHcCCCE
Confidence 46677776 45555777899999988899999999999986
No 383
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=28.47 E-value=4.2e+02 Score=27.26 Aligned_cols=113 Identities=15% Similarity=0.169 Sum_probs=58.9
Q ss_pred CCCHHHHHHHHHHHHhCCCeEEcCCcccccccCcccccccCCcccccccccCCCCCcEEEEec--Chh----HHHHHHHH
Q 007327 113 GVPEADTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSK--SGG----MSNELYNT 186 (608)
Q Consensus 113 Gf~e~~~~~l~~~a~~~g~rvlGPNc~Gi~~~~~~~l~~~~~~~~~~~p~~~~~~G~valvSQ--SG~----l~~~~~~~ 186 (608)
+++|+..+++.+.|++.|-+ ||...- .|. .-+.+.|+++.. +.. +...+-..
T Consensus 29 ~Vs~~tr~rV~~~a~elgY~---pn~~a~------~l~-------------~~~~~~Igvv~~~~~~~~~~~l~~gi~~~ 86 (328)
T PRK11303 29 RVSDKTVEKVMAVVREHNYH---PNAVAA------GLR-------------AGRTRSIGLIIPDLENTSYARIAKYLERQ 86 (328)
T ss_pred CcCHHHHHHHHHHHHHhCCC---CCHHHH------Hhh-------------cCCCceEEEEeCCCCCchHHHHHHHHHHH
Confidence 47888899999999998753 543210 010 001234444432 222 22334445
Q ss_pred HHhcCCceeEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCccHHHHHHHHHhCCCCCCEEEE
Q 007327 187 IARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAW 256 (608)
Q Consensus 187 ~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~T~~I~ly~E~g~~~~~~f~~~~r~a~~~KPVvvl 256 (608)
+.++|.-+..+ .+.++. -...++++.+.+. .+.+|++... ......+++.+.+ .++|||.+
T Consensus 87 ~~~~g~~~~~~-~~~~~~---~~~~~~~~~l~~~-~vdgiIi~~~--~~~~~~~~~~l~~--~~iPvV~v 147 (328)
T PRK11303 87 ARQRGYQLLIA-CSDDQP---DNEMRCAEHLLQR-QVDALIVSTS--LPPEHPFYQRLQN--DGLPIIAL 147 (328)
T ss_pred HHHcCCEEEEE-eCCCCH---HHHHHHHHHHHHc-CCCEEEEcCC--CCCChHHHHHHHh--cCCCEEEE
Confidence 55556554332 233332 2344677776543 6788877632 1222344444443 57899987
No 384
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=28.38 E-value=1.1e+02 Score=32.10 Aligned_cols=119 Identities=10% Similarity=0.106 Sum_probs=69.5
Q ss_pred eccccc--CCHHHHhhcCCCccEEEEeccChhcHHHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHh-CCCeEEc--
Q 007327 61 IAIPVH--STVEAACAAHPMADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARS-NNKVVIG-- 135 (608)
Q Consensus 61 ~G~~~y--~sv~~i~~~~p~vDlavi~vp~~~~~~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~-~g~rvlG-- 135 (608)
.|+.+. .+++++++. + .+.++++.+.+.+.+.+.++|++- |=-|.-|=...+..+.+++++ +.+-++|
T Consensus 53 ~Gv~~v~~~~~~~v~~~----~--~ViirAHGv~~~~~~~~~~~g~~v-iDaTCP~V~k~~~~v~~~~~~Gy~iviiG~~ 125 (281)
T PRK12360 53 KGVKTIEESEIDSLKEG----D--VVIIRSHGVSKKVYKDLKDKGLEI-IDATCPFVKKIQNIVEEYYNKGYSIIIVGDK 125 (281)
T ss_pred CcCEEECcCchhhCCCC----C--EEEEeCCCCCHHHHHHHHHCCCeE-EeCCCccchHHHHHHHHHHhCCCEEEEEcCC
Confidence 678888 888886421 3 344788888899999999988873 223444544577777777777 3577889
Q ss_pred --CCcccccccCcccccccCCcccccccccCCCCCcEEEEecChhH---HHHHHHHHHh
Q 007327 136 --PATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGM---SNELYNTIAR 189 (608)
Q Consensus 136 --PNc~Gi~~~~~~~l~~~~~~~~~~~p~~~~~~G~valvSQSG~l---~~~~~~~~~~ 189 (608)
|.-.|+........ .+.-+.... . ....+.+++++||.--- ...+.+.+.+
T Consensus 126 ~HpEv~gi~g~~~~~~-~vv~~~~d~-~-~l~~~~kv~~vsQTT~~~~~~~~iv~~l~~ 181 (281)
T PRK12360 126 NHPEVIGINGWCDNSA-YIVNSIEEV-E-NIPFLDKACVVAQTTIIPELWEDILNVIKL 181 (281)
T ss_pred CCceeeEeccCcCCCe-EEECCHHHH-h-hCccccCEEEEECCCCcHHHHHHHHHHHHH
Confidence 77777764432000 000000000 0 11134789999886543 3334444443
No 385
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=28.27 E-value=5.7e+02 Score=28.45 Aligned_cols=87 Identities=15% Similarity=0.240 Sum_probs=56.4
Q ss_pred CCCcEEEEe-cChhHHHHHHHHHHhcCCceeEE----eecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCccHHHH
Q 007327 166 RPGSVGFVS-KSGGMSNELYNTIARVTDGIYEG----IAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSL 240 (608)
Q Consensus 166 ~~G~valvS-QSG~l~~~~~~~~~~~g~G~s~~----vs~Gn~~~~dv~~~d~l~~l~~Dp~T~~I~ly~E~g~~~~~~f 240 (608)
-|-+||+|| .+|+.-..++..+.++.-.+... .==|.++ --++...|+++...++..+|++- - |+..-+.+
T Consensus 128 ~p~~i~vits~~~aa~~D~~~~~~~r~p~~~~~~~~~~vQG~~a--~~~i~~al~~~~~~~~~dviii~-R-GGGs~eDL 203 (432)
T TIGR00237 128 FPKRVGVITSQTGAALADILHILKRRDPSLKVVIYPTLVQGEGA--VQSIVESIELANTKNECDVLIVG-R-GGGSLEDL 203 (432)
T ss_pred CCCEEEEEeCCccHHHHHHHHHHHhhCCCceEEEecccccCccH--HHHHHHHHHHhhcCCCCCEEEEe-c-CCCCHHHh
Confidence 577899995 67777778888888775433222 2237777 67788888888887777777654 4 44433322
Q ss_pred H-----HHHHhC-CCCCCEEEE
Q 007327 241 V-----EALKQG-KVNKPVVAW 256 (608)
Q Consensus 241 ~-----~~~r~a-~~~KPVvvl 256 (608)
. ..+|.. ....|||.-
T Consensus 204 ~~Fn~e~~~rai~~~~~Pvis~ 225 (432)
T TIGR00237 204 WSFNDEKVARAIFLSKIPIISA 225 (432)
T ss_pred hhcCcHHHHHHHHcCCCCEEEe
Confidence 1 233333 378899965
No 386
>PTZ00377 alanine aminotransferase; Provisional
Probab=27.74 E-value=3e+02 Score=30.83 Aligned_cols=35 Identities=17% Similarity=0.362 Sum_probs=25.6
Q ss_pred CCCEEEEecC----C--CCHHHHHHHHHHHHhCCCeEEcCC
Q 007327 103 TIRVVAIIAE----G--VPEADTKQLIAYARSNNKVVIGPA 137 (608)
Q Consensus 103 gv~~~viis~----G--f~e~~~~~l~~~a~~~g~rvlGPN 137 (608)
++|.+++++- | ++++..++|.++|+++++.||==+
T Consensus 218 ~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~~~~~iI~De 258 (481)
T PTZ00377 218 TPRALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADE 258 (481)
T ss_pred CeeEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEeh
Confidence 6787777753 2 455578899999999998876333
No 387
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=27.66 E-value=1.2e+02 Score=29.15 Aligned_cols=16 Identities=38% Similarity=0.468 Sum_probs=12.6
Q ss_pred CCCCEEEEEeCCCccC
Q 007327 249 VNKPVVAWVSGTCARL 264 (608)
Q Consensus 249 ~~KPVvvlk~Grs~~g 264 (608)
..||||+..-|..-.+
T Consensus 92 ~~~p~Ia~v~G~a~g~ 107 (195)
T cd06558 92 LPKPVIAAVNGAALGG 107 (195)
T ss_pred CCCCEEEEECCeeecH
Confidence 6899999987776543
No 388
>PRK09265 aminotransferase AlaT; Validated
Probab=27.66 E-value=4.9e+02 Score=28.07 Aligned_cols=44 Identities=16% Similarity=0.360 Sum_probs=29.0
Q ss_pred HHHHHHhcCCCCCEEEEecC----C--CCHHHHHHHHHHHHhCCCeEEcCC
Q 007327 93 ASSMAALKQPTIRVVAIIAE----G--VPEADTKQLIAYARSNNKVVIGPA 137 (608)
Q Consensus 93 ~~~le~~~~~gv~~~viis~----G--f~e~~~~~l~~~a~~~g~rvlGPN 137 (608)
+++.+.+ ..+++.+++.+. | ++....++|.++|+++|+.|+==+
T Consensus 159 ~~l~~~~-~~~~~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De 208 (404)
T PRK09265 159 DDIRSKI-TPRTKAIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADE 208 (404)
T ss_pred HHHHHhc-cccceEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEeh
Confidence 3443434 457777776653 4 445568899999999998876333
No 389
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=27.58 E-value=1.8e+02 Score=27.56 Aligned_cols=49 Identities=10% Similarity=0.102 Sum_probs=33.0
Q ss_pred EEeccChhcHHHHHHHhcCCCCCEEEEec-CCCCHHHHHHHHHHHHhCCC
Q 007327 83 INFSSFRSAAASSMAALKQPTIRVVAIIA-EGVPEADTKQLIAYARSNNK 131 (608)
Q Consensus 83 vi~vp~~~~~~~~le~~~~~gv~~~viis-~Gf~e~~~~~l~~~a~~~g~ 131 (608)
||..+...+.+++.+++.+..+..+++-+ +|--.++-.++++.+|+.|.
T Consensus 43 Vi~~g~~~tp~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G~ 92 (143)
T COG2185 43 VINLGLFQTPEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALREAGV 92 (143)
T ss_pred EEecCCcCCHHHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHHHHHhCC
Confidence 44555555667777777666776555422 24445588899999999885
No 390
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=27.47 E-value=6.1e+02 Score=24.99 Aligned_cols=169 Identities=9% Similarity=0.017 Sum_probs=81.5
Q ss_pred HHHHhhcCCCccEEEEeccCh-hcHHHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCe--EEcCCcccc----
Q 007327 69 VEAACAAHPMADVFINFSSFR-SAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKV--VIGPATVGG---- 141 (608)
Q Consensus 69 v~~i~~~~p~vDlavi~vp~~-~~~~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~r--vlGPNc~Gi---- 141 (608)
+.+...+. ..++.+...... ......++.+...++.++|+........ ..+.+++.|++ +++-++-+.
T Consensus 21 ~~~~a~~~-g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgii~~~~~~~~~----~~~~~~~~~ipvV~~~~~~~~~~~~~ 95 (268)
T cd06270 21 VESVARKA-GKHLIITAGHHSAEKEREAIEFLLERRCDALILHSKALSDD----ELIELAAQVPPLVLINRHIPGLADRC 95 (268)
T ss_pred HHHHHHHC-CCEEEEEeCCCchHHHHHHHHHHHHcCCCEEEEecCCCCHH----HHHHHhhCCCCEEEEeccCCCCCCCe
Confidence 34433444 266665443321 1123566666678999999876544432 24555667765 444322111
Q ss_pred cccCcccccccCCcccccccccCCCCCcEEEEecChhH------HHHHHHHHHhcCCceeE-EeecCCCCCCCCCHHHHH
Q 007327 142 IQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGM------SNELYNTIARVTDGIYE-GIAIGGDVFPGSTLSDHI 214 (608)
Q Consensus 142 ~~~~~~~l~~~~~~~~~~~p~~~~~~G~valvSQSG~l------~~~~~~~~~~~g~G~s~-~vs~Gn~~~~dv~~~d~l 214 (608)
+..+....+ .... ..+- ....++|++++.+... ...+.+.+.++|+-+.. .+-.++.. .-+..+.+
T Consensus 96 v~~d~~~~~--~~~~-~~l~--~~g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 168 (268)
T cd06270 96 IWLDNEQGG--YLAT-EHLI--ELGHRKIACITGPLTKEDARLRLQGYRDALAEAGIALDESLIIEGDFT--EEGGYAAM 168 (268)
T ss_pred EEECcHHHH--HHHH-HHHH--HCCCceEEEEeCCcccccHHHHHHHHHHHHHHcCCCCCcceEEECCCC--HHHHHHHH
Confidence 111110000 0000 0000 1145689999765322 22244556666665421 23333322 22334444
Q ss_pred H-HhhcCCCccEEEEEEecCCccHHHHHHHHHhCCCCCC
Q 007327 215 L-RFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKP 252 (608)
Q Consensus 215 ~-~l~~Dp~T~~I~ly~E~g~~~~~~f~~~~r~a~~~KP 252 (608)
+ ++...|+.++|+..- -.-...+++++++...++|
T Consensus 169 ~~~l~~~~~~~ai~~~~---d~~a~g~~~~l~~~g~~ip 204 (268)
T cd06270 169 QELLARGAPFTAVFCAN---DEMAAGAISALREHGISVP 204 (268)
T ss_pred HHHHhCCCCCCEEEEcC---cHHHHHHHHHHHHcCCCCC
Confidence 4 455667777776653 3344678888887655545
No 391
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=27.18 E-value=74 Score=32.92 Aligned_cols=94 Identities=18% Similarity=0.127 Sum_probs=55.5
Q ss_pred HHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCeE---------------EcCCcccccccCcccccccCCcccc
Q 007327 94 SSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVV---------------IGPATVGGIQAGAFKIGDTAGTIDN 158 (608)
Q Consensus 94 ~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~rv---------------lGPNc~Gi~~~~~~~l~~~~~~~~~ 158 (608)
.+.++. ..|..+++++.+=+++.+..+|.++|++.||-. .|+.-+||-|-+-..+ ......
T Consensus 123 QI~eA~-~~GADaVLLI~~~L~~~~l~~l~~~a~~lGle~lVEVh~~~El~~al~~~a~iiGINnRdL~tf---~vd~~~ 198 (254)
T PF00218_consen 123 QIYEAR-AAGADAVLLIAAILSDDQLEELLELAHSLGLEALVEVHNEEELERALEAGADIIGINNRDLKTF---EVDLNR 198 (254)
T ss_dssp HHHHHH-HTT-SEEEEEGGGSGHHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEEEEESBCTTTC---CBHTHH
T ss_pred HHHHHH-HcCCCEeehhHHhCCHHHHHHHHHHHHHcCCCeEEEECCHHHHHHHHHcCCCEEEEeCccccCc---ccChHH
Confidence 344444 489999999998888877788888888888753 3777778765432111 111100
Q ss_pred cccccCCCCCcEEEEecChhHHHHHHHHHHhcC
Q 007327 159 IIHCKLYRPGSVGFVSKSGGMSNELYNTIARVT 191 (608)
Q Consensus 159 ~~p~~~~~~G~valvSQSG~l~~~~~~~~~~~g 191 (608)
...-...-|.++-.||-||--+.+=+..+.+.|
T Consensus 199 ~~~l~~~ip~~~~~iseSGI~~~~d~~~l~~~G 231 (254)
T PF00218_consen 199 TEELAPLIPKDVIVISESGIKTPEDARRLARAG 231 (254)
T ss_dssp HHHHHCHSHTTSEEEEESS-SSHHHHHHHCTTT
T ss_pred HHHHHhhCccceeEEeecCCCCHHHHHHHHHCC
Confidence 000001235679999999988776655555443
No 392
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=27.09 E-value=3.5e+02 Score=29.57 Aligned_cols=70 Identities=13% Similarity=-0.009 Sum_probs=39.4
Q ss_pred ccccCCHHHHhhcCCCccEEEEeccCh-hcHHHHHHHhcCCCCCEEEEecC-----C--CCHHHHHHHHHHHHhC-CCeE
Q 007327 63 IPVHSTVEAACAAHPMADVFINFSSFR-SAAASSMAALKQPTIRVVAIIAE-----G--VPEADTKQLIAYARSN-NKVV 133 (608)
Q Consensus 63 ~~~y~sv~~i~~~~p~vDlavi~vp~~-~~~~~~le~~~~~gv~~~viis~-----G--f~e~~~~~l~~~a~~~-g~rv 133 (608)
-|+|+....+.... ..++.-+.+... ..++++.+.|. .++|.+++++. | +++...++|.++|+++ ++.|
T Consensus 172 ~P~y~~~~~~~~~~-g~~~~~v~~~~~g~~~~~l~~~~~-~~~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~~~~~i 249 (431)
T PRK15481 172 DPCFLSSINMLRYA-GFSASPVSVDAEGMQPEKLERALA-QGARAVILTPRAHNPTGCSLSARRAAALRNLLARYPQVLV 249 (431)
T ss_pred CCCcHHHHHHHHHc-CCeEEeeccCCCCCCHHHHHHHHh-cCCCEEEECCCCCCCCCccCCHHHHHHHHHHHHhcCCceE
Confidence 35666666554433 144443333211 22344445554 57888777632 3 3444667999999998 7766
Q ss_pred E
Q 007327 134 I 134 (608)
Q Consensus 134 l 134 (608)
+
T Consensus 250 i 250 (431)
T PRK15481 250 I 250 (431)
T ss_pred E
Confidence 6
No 393
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=27.08 E-value=1.8e+02 Score=25.92 Aligned_cols=72 Identities=13% Similarity=0.275 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHhcCCceeEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCC--ccHHHHHHHHHhCCCCCCEEE
Q 007327 178 GMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGG--RDEYSLVEALKQGKVNKPVVA 255 (608)
Q Consensus 178 ~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~T~~I~ly~E~g~--~~~~~f~~~~r~a~~~KPVvv 255 (608)
+-...+.+.+.++|..+-. -.+..|.+.++.++++..+|++..+ +- ....++++.+|+...+.||.+
T Consensus 4 a~~~~l~~~L~~~~~~vv~----------~~~~dd~~~~i~~~~~i~avvi~~d-~~~~~~~~~ll~~i~~~~~~iPVFl 72 (115)
T PF03709_consen 4 AASRELAEALEQRGREVVD----------ADSTDDALAIIESFTDIAAVVISWD-GEEEDEAQELLDKIRERNFGIPVFL 72 (115)
T ss_dssp HHHHHHHHHHHHTTTEEEE----------ESSHHHHHHHHHCTTTEEEEEEECH-HHHHHHHHHHHHHHHHHSTT-EEEE
T ss_pred HHHHHHHHHHHHCCCEEEE----------eCChHHHHHHHHhCCCeeEEEEEcc-cccchhHHHHHHHHHHhCCCCCEEE
Confidence 3445566666655554322 4556799999999999999999976 22 134578888988778999999
Q ss_pred EEeCC
Q 007327 256 WVSGT 260 (608)
Q Consensus 256 lk~Gr 260 (608)
+.--.
T Consensus 73 ~~~~~ 77 (115)
T PF03709_consen 73 LAERD 77 (115)
T ss_dssp EESCC
T ss_pred EecCC
Confidence 97543
No 394
>PLN02231 alanine transaminase
Probab=26.86 E-value=3.5e+02 Score=31.01 Aligned_cols=34 Identities=18% Similarity=0.570 Sum_probs=25.6
Q ss_pred CCCEEEEecCC------CCHHHHHHHHHHHHhCCCeEEcC
Q 007327 103 TIRVVAIIAEG------VPEADTKQLIAYARSNNKVVIGP 136 (608)
Q Consensus 103 gv~~~viis~G------f~e~~~~~l~~~a~~~g~rvlGP 136 (608)
++|.+++++-+ +++...++|+++|+++|+.||==
T Consensus 271 ~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~D 310 (534)
T PLN02231 271 TVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLLAD 310 (534)
T ss_pred CeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 57777777643 45567899999999999887633
No 395
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=26.75 E-value=2.3e+02 Score=31.63 Aligned_cols=85 Identities=20% Similarity=0.366 Sum_probs=59.4
Q ss_pred CCCcEEEE-ecChhHHHHHHHHHHhcCCcee----EEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCcc----
Q 007327 166 RPGSVGFV-SKSGGMSNELYNTIARVTDGIY----EGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRD---- 236 (608)
Q Consensus 166 ~~G~valv-SQSG~l~~~~~~~~~~~g~G~s----~~vs~Gn~~~~dv~~~d~l~~l~~Dp~T~~I~ly~E~g~~~---- 236 (608)
-|-.||+| |.+|+....|+..+.++--.+- -+.==|..+ .-.+.+.|+++.+.++..+|++- - |+..
T Consensus 134 ~p~~IGVITS~tgAairDIl~~~~rR~P~~~viv~pt~VQG~~A--~~eIv~aI~~an~~~~~DvlIVa-R-GGGSiEDL 209 (440)
T COG1570 134 FPKKIGVITSPTGAALRDILHTLSRRFPSVEVIVYPTLVQGEGA--AEEIVEAIERANQRGDVDVLIVA-R-GGGSIEDL 209 (440)
T ss_pred CCCeEEEEcCCchHHHHHHHHHHHhhCCCCeEEEEeccccCCCc--HHHHHHHHHHhhccCCCCEEEEe-c-CcchHHHH
Confidence 57789998 6889999999988877643222 222347888 88899999999999999998765 3 3333
Q ss_pred ----HHHHHHHHHhCCCCCCEEEE
Q 007327 237 ----EYSLVEALKQGKVNKPVVAW 256 (608)
Q Consensus 237 ----~~~f~~~~r~a~~~KPVvvl 256 (608)
.+...+++-. .++|||.-
T Consensus 210 W~FNdE~vaRAi~~--s~iPvISA 231 (440)
T COG1570 210 WAFNDEIVARAIAA--SRIPVISA 231 (440)
T ss_pred hccChHHHHHHHHh--CCCCeEee
Confidence 2333333332 67899854
No 396
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=26.66 E-value=1.1e+02 Score=31.42 Aligned_cols=16 Identities=25% Similarity=0.279 Sum_probs=12.6
Q ss_pred CCCCEEEEEeCCCccC
Q 007327 249 VNKPVVAWVSGTCARL 264 (608)
Q Consensus 249 ~~KPVvvlk~Grs~~g 264 (608)
..||||+..-|..-.|
T Consensus 100 ~~kPvIaaV~G~a~Gg 115 (265)
T PRK05674 100 LKIPTLAVVQGAAFGG 115 (265)
T ss_pred CCCCEEEEEcCEEEec
Confidence 6899999987776543
No 397
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=26.64 E-value=1.1e+02 Score=31.27 Aligned_cols=16 Identities=38% Similarity=0.424 Sum_probs=12.7
Q ss_pred CCCCEEEEEeCCCccC
Q 007327 249 VNKPVVAWVSGTCARL 264 (608)
Q Consensus 249 ~~KPVvvlk~Grs~~g 264 (608)
..||||+..-|..-.|
T Consensus 98 ~~kPvIaav~G~a~Gg 113 (262)
T PRK05995 98 CPKPVIARVHGDAYAG 113 (262)
T ss_pred CCCCEEEEECCEEEhh
Confidence 6899999988776543
No 398
>PLN02550 threonine dehydratase
Probab=26.61 E-value=3.6e+02 Score=31.43 Aligned_cols=212 Identities=17% Similarity=0.118 Sum_probs=103.9
Q ss_pred ccCCHHHHhhcCCCccEEEEeccChhcHHHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCC--CeEEcCCccccc
Q 007327 65 VHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNN--KVVIGPATVGGI 142 (608)
Q Consensus 65 ~y~sv~~i~~~~p~vDlavi~vp~~~~~~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g--~rvlGPNc~Gi~ 142 (608)
+|..+..+.++. ..--||+..+.-....+--.|...|++..|++..+-++...+.+ |.+| +.+.|.+.-.-.
T Consensus 144 A~n~I~~L~~e~--~~~GVV~aSaGNhAqgvA~aA~~lGika~IvmP~~tp~~Kv~~~----r~~GAeVvl~g~~~dea~ 217 (591)
T PLN02550 144 AYNMMAKLPKEQ--LDKGVICSSAGNHAQGVALSAQRLGCDAVIAMPVTTPEIKWQSV----ERLGATVVLVGDSYDEAQ 217 (591)
T ss_pred HHHHHHHHHHhc--CCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHH----HHcCCEEEEeCCCHHHHH
Confidence 444555543321 12224555554334556667778999999999988876543333 5565 456665432211
Q ss_pred ccCcccccc-cCCcccccccccCCCCCcEEEEecChhHHHHHHHHHHhcCCceeEEeecCCCCCCCCCHHHHHHHhhcCC
Q 007327 143 QAGAFKIGD-TAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIP 221 (608)
Q Consensus 143 ~~~~~~l~~-~~~~~~~~~p~~~~~~G~valvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp 221 (608)
.... .+.. -+.+|. .|.. .|-.+ -.| |+++.+|++.+.. .+ =.-++++|+--. -..+.-++..+ .|
T Consensus 218 ~~A~-~la~e~g~~fi--~pfd--dp~vi--aGq-gTig~EI~eQl~~-~~-D~VvvpVGgGGL-iaGia~~lK~l--~p 284 (591)
T PLN02550 218 AYAK-QRALEEGRTFI--PPFD--HPDVI--AGQ-GTVGMEIVRQHQG-PL-HAIFVPVGGGGL-IAGIAAYVKRV--RP 284 (591)
T ss_pred HHHH-HHHHhcCCEEE--CCCC--ChHHH--HHH-HHHHHHHHHHcCC-CC-CEEEEEeChhHH-HHHHHHHHHHh--CC
Confidence 1111 1100 011121 1100 12222 234 8888888876542 11 235677777531 12234444443 79
Q ss_pred CccEEEEEEecCCccHHHHHHHHHhCCCCCCEEEEEeCCCccCcccccccCCCCCcCCCCcchHHHHHHHHHHcCCcccC
Q 007327 222 QVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPT 301 (608)
Q Consensus 222 ~T~~I~ly~E~g~~~~~~f~~~~r~a~~~KPVvvlk~Grs~~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaGvi~v~ 301 (608)
++|+|++--| +. ..+.... ..+|||..=.++.-..| .+... .| + ..++.+-+-.+-+..=
T Consensus 285 ~vkVIGVEp~-~a---~~~~~s~---~~G~~v~~~~~~tiAdG----iav~~----~G-~----~t~~i~~~~vD~vV~V 344 (591)
T PLN02550 285 EVKIIGVEPS-DA---NAMALSL---HHGERVMLDQVGGFADG----VAVKE----VG-E----ETFRLCRELVDGVVLV 344 (591)
T ss_pred CCEEEEEEEC-CC---hHHHHHH---hcCCccccCCCCCccce----eecCC----CC-H----HHHHHHHhhCCEEEEE
Confidence 9999999888 43 2222222 24667654322332222 11111 11 2 4454333333444444
Q ss_pred CHHHHHHHHHHHHH
Q 007327 302 SYEAFESAIKETFE 315 (608)
Q Consensus 302 ~~~el~~~~~~~~~ 315 (608)
+-+|+.++++.++.
T Consensus 345 sd~eI~~Ai~~l~e 358 (591)
T PLN02550 345 SRDAICASIKDMFE 358 (591)
T ss_pred CHHHHHHHHHHHHH
Confidence 66777777776665
No 399
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=26.60 E-value=4.6e+02 Score=25.51 Aligned_cols=72 Identities=13% Similarity=0.035 Sum_probs=45.6
Q ss_pred HHHHhhcCCCccEEEEeccChh-----cHHHHHHHhcCC-------CCCEEEEecCCC----CHHHHHHHHHHHHhCCCe
Q 007327 69 VEAACAAHPMADVFINFSSFRS-----AAASSMAALKQP-------TIRVVAIIAEGV----PEADTKQLIAYARSNNKV 132 (608)
Q Consensus 69 v~~i~~~~p~vDlavi~vp~~~-----~~~~~le~~~~~-------gv~~~viis~Gf----~e~~~~~l~~~a~~~g~r 132 (608)
++++. +.|..|+..|-.. .+...++.+... |-+..++.|+|- .+.....+......+|+.
T Consensus 64 ~~~l~----~aD~ii~gsPty~g~~~~~lk~fld~~~~~~~~~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~~~~~gm~ 139 (200)
T PRK03767 64 PDELA----DYDAIIFGTPTRFGNMAGQMRNFLDQTGGLWAKGALVGKVGSVFTSTGTQHGGQETTITSTHTTLLHHGMV 139 (200)
T ss_pred HHHHH----hCCEEEEEecccCCCchHHHHHHHHHhccccccCCccCCEEEEEEeCCCCCCChHHHHHHHHHHHHHcCCE
Confidence 66653 3699998887532 134566666321 344555556554 344677888888999999
Q ss_pred EEcC--Cccccccc
Q 007327 133 VIGP--ATVGGIQA 144 (608)
Q Consensus 133 vlGP--Nc~Gi~~~ 144 (608)
++|+ .|-|..+.
T Consensus 140 vv~~~~~~~~~~~~ 153 (200)
T PRK03767 140 IVGLPYAFQGQMDV 153 (200)
T ss_pred EeCCCCcccccccc
Confidence 9996 66665433
No 400
>PLN02926 histidinol dehydrogenase
Probab=26.51 E-value=7.2e+02 Score=27.84 Aligned_cols=74 Identities=12% Similarity=0.030 Sum_probs=48.1
Q ss_pred CCHHHHHHHhhcCCCccEEEEEEecCCccHHHHHHHHHhCC-CCCCEEEEEeCCCccCcccccccCCCCCcCCCCcchHH
Q 007327 208 STLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGK-VNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQ 286 (608)
Q Consensus 208 v~~~d~l~~l~~Dp~T~~I~ly~E~g~~~~~~f~~~~r~a~-~~KPVvvlk~Grs~~g~~~~aa~sHtgalag~~~~~a~ 286 (608)
.=..|+|.-.++||+..+|++--. +++++.+.+.- + +-....+ . +
T Consensus 252 ~vAaDLLaQAEHdp~a~aiLvT~s------~~la~~V~~~v~~-----------------ql~~l~r-------~----~ 297 (431)
T PLN02926 252 HVAADLLSQAEHGPDSQVVLVAVG------DVDLDAIEEEVEK-----------------QCQSLPR-------G----E 297 (431)
T ss_pred HHHHHHHHHhccCCCCcEEEEECC------HHHHHHHHHHHHH-----------------HHHhCCh-------H----H
Confidence 335789999999999999877633 45555443311 0 0001111 1 5
Q ss_pred HHHHHHHHcCCcccCCHHHHHHHHHHHHH
Q 007327 287 AKNQALRDAGAVVPTSYEAFESAIKETFE 315 (608)
Q Consensus 287 ~~~a~~~qaGvi~v~~~~el~~~~~~~~~ 315 (608)
+.+..+++..++.++|++|.++++..+..
T Consensus 298 i~~~sl~~g~iivv~~l~ea~~~~N~~AP 326 (431)
T PLN02926 298 IASKALGHSFIVVARDMAEAISFSNLYAP 326 (431)
T ss_pred HHHHHHHCCEEEEECCHHHHHHHHHhhCh
Confidence 56666777669999999999998876654
No 401
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=26.48 E-value=3.1e+02 Score=29.13 Aligned_cols=100 Identities=19% Similarity=0.239 Sum_probs=67.1
Q ss_pred EEeccChhcHHHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCe--EEcCCcccccccCc--ccccccCCcccc
Q 007327 83 INFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKV--VIGPATVGGIQAGA--FKIGDTAGTIDN 158 (608)
Q Consensus 83 vi~vp~~~~~~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~r--vlGPNc~Gi~~~~~--~~l~~~~~~~~~ 158 (608)
|+......++..++..+.+.|.+.-|++++++|.-.-..+.+..+++|++ +|==..+|.+.-.. +-+| +
T Consensus 123 IlTh~~S~~v~~~l~~A~~~~k~~~V~VtESRP~~eG~~~ak~L~~~gI~~~~I~Dsa~~~~~~~vd~VivG---a---- 195 (301)
T COG1184 123 ILTHSFSKTVLEVLKTAADRGKRFKVIVTESRPRGEGRIMAKELRQSGIPVTVIVDSAVGAFMSRVDKVLVG---A---- 195 (301)
T ss_pred EEEecCcHHHHHHHHHhhhcCCceEEEEEcCCCcchHHHHHHHHHHcCCceEEEechHHHHHHHhCCEEEEC---c----
Confidence 33444566788999999989999899999999987777788888889976 33334455554322 1121 0
Q ss_pred cccccCCCCCcEEEEecChhHHHHHHHHHHhcCCceeE
Q 007327 159 IIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYE 196 (608)
Q Consensus 159 ~~p~~~~~~G~valvSQSG~l~~~~~~~~~~~g~G~s~ 196 (608)
..-..-| ++++++|+...++. +++.+..|--
T Consensus 196 ---d~I~~nG--~lvnkiGT~~lA~~--A~e~~~Pf~v 226 (301)
T COG1184 196 ---DAILANG--ALVNKIGTSPLALA--ARELRVPFYV 226 (301)
T ss_pred ---cceecCC--cEEeccchHHHHHH--HHHhCCCEEE
Confidence 0112344 99999999877664 5667776643
No 402
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=26.05 E-value=1.2e+02 Score=30.94 Aligned_cols=53 Identities=28% Similarity=0.421 Sum_probs=33.4
Q ss_pred HHHHHHHhhcCCCccEEEEEEecCCc------cHH------------HHHH----HHHhCC-CCCCEEEEEeCCCccC
Q 007327 210 LSDHILRFNNIPQVKMMVVLGELGGR------DEY------------SLVE----ALKQGK-VNKPVVAWVSGTCARL 264 (608)
Q Consensus 210 ~~d~l~~l~~Dp~T~~I~ly~E~g~~------~~~------------~f~~----~~r~a~-~~KPVvvlk~Grs~~g 264 (608)
+.+.++.+.+||++|+|++..+ | + |-. .++. ..++.. ..||||+..-|-.-.|
T Consensus 37 l~~al~~~~~d~~vr~vvltg~-g-~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg 112 (257)
T COG1024 37 LAEALDEAEADPDVRVVVLTGA-G-KAFSAGADLKELLSPEDGNAAENLMQPGQDLLRALADLPKPVIAAVNGYALGG 112 (257)
T ss_pred HHHHHHHHhhCCCeEEEEEECC-C-CceecccCHHHHhcccchhHHHHHHhHHHHHHHHHHhCCCCEEEEEcceEeec
Confidence 4566777777888888888877 5 3 111 1222 233333 7899999987766554
No 403
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=26.04 E-value=4.8e+02 Score=28.72 Aligned_cols=150 Identities=13% Similarity=0.054 Sum_probs=79.2
Q ss_pred HHHHHHHhcCCCCCEEEEecCCCCHH---HHHHHHHHHH-hCCCeEEcCCcccccccCccccc----ccCCcccccc-c-
Q 007327 92 AASSMAALKQPTIRVVAIIAEGVPEA---DTKQLIAYAR-SNNKVVIGPATVGGIQAGAFKIG----DTAGTIDNII-H- 161 (608)
Q Consensus 92 ~~~~le~~~~~gv~~~viis~Gf~e~---~~~~l~~~a~-~~g~rvlGPNc~Gi~~~~~~~l~----~~~~~~~~~~-p- 161 (608)
...+.+.+.+...+.++|+|+..+|. |.+.+.+.++ +.+++|+.=+|-|+-........ .+.-.|.... +
T Consensus 74 ~~~I~~~~~~~~p~~I~v~~tC~~~iIGdDi~~v~~~~~~~~~~~vi~v~t~gf~g~~~~g~~~al~~l~~~~~~~~~~~ 153 (430)
T cd01981 74 VENITRKDKEEKPDLIVLTPTCTSSILQEDLQNFVRAAGLSSKSPVLPLDVNHYRVNELQAADETFEQLVRFYAEKARPQ 153 (430)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccHHHHhhCHHHHHHHhhhccCCCeEEecCCCccchHHHHHHHHHHHHHHHHhcccccc
Confidence 44455555545677888888888887 4444443333 45788888888887532110000 0000010000 0
Q ss_pred ---ccCCCCCcEEEEecC------hhHHHHHHHHHHhcCCceeEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEE-EEe
Q 007327 162 ---CKLYRPGSVGFVSKS------GGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVV-LGE 231 (608)
Q Consensus 162 ---~~~~~~G~valvSQS------G~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~T~~I~l-y~E 231 (608)
.....+..|-|+.-+ .+=..++...+...|+....+++.|. ++.|+-+ =++.+.-++ +-+
T Consensus 154 ~~~~~~~~~~~VNiiG~~~~~~~~~~d~~ei~~lL~~~Gl~v~~~~~~~~------~~~~i~~----~~~A~lniv~~~~ 223 (430)
T cd01981 154 GTPREKTEKPSVNLIGPSSLGFHNRHDCRELKRLLHTLGIEVNVVIPEGA------SVDDLNE----LPKAWFNIVPYRE 223 (430)
T ss_pred ccccccCCCCcEEEEcCCCCCCCCcchHHHHHHHHHHcCCeEEEEEcCCC------CHHHHHh----hhhCeEEEEecHH
Confidence 001245678888543 23345677778888888876655433 3455443 344444333 323
Q ss_pred cCCccHHHHHHHHHhCCCCCCEEEE
Q 007327 232 LGGRDEYSLVEALKQGKVNKPVVAW 256 (608)
Q Consensus 232 ~g~~~~~~f~~~~r~a~~~KPVvvl 256 (608)
.+....+.+++ +.++|.+..
T Consensus 224 ----~~~~~a~~L~~-~~GiP~~~~ 243 (430)
T cd01981 224 ----YGLSAALYLEE-EFGMPSVKI 243 (430)
T ss_pred ----HHHHHHHHHHH-HhCCCeEec
Confidence 24556666654 358897543
No 404
>PLN02600 enoyl-CoA hydratase
Probab=25.93 E-value=1.4e+02 Score=30.44 Aligned_cols=16 Identities=25% Similarity=0.331 Sum_probs=13.0
Q ss_pred CCCCEEEEEeCCCccC
Q 007327 249 VNKPVVAWVSGTCARL 264 (608)
Q Consensus 249 ~~KPVvvlk~Grs~~g 264 (608)
..||||+..-|..-.|
T Consensus 87 ~~kPvIAav~G~a~Gg 102 (251)
T PLN02600 87 LSIPTIAVVEGAALGG 102 (251)
T ss_pred CCCCEEEEecCeecch
Confidence 6899999988877654
No 405
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=25.75 E-value=1.9e+02 Score=30.93 Aligned_cols=83 Identities=19% Similarity=0.253 Sum_probs=48.5
Q ss_pred CCCHHHHHHHhhcCCCccEEEEEEecCCcc-HHHHHHHHHhCC-CCCCEEEEEeCCCccCcccccccCCCCCcCCCCcch
Q 007327 207 GSTLSDHILRFNNIPQVKMMVVLGELGGRD-EYSLVEALKQGK-VNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMES 284 (608)
Q Consensus 207 dv~~~d~l~~l~~Dp~T~~I~ly~E~g~~~-~~~f~~~~r~a~-~~KPVvvlk~Grs~~g~~~~aa~sHtgalag~~~~~ 284 (608)
+.+ .++++++.++ ..+.|++-.= |..+ +.+++++++++. ++.|||+. -|+..| .....+
T Consensus 220 G~~-~~~l~~~~~~-g~~GiVl~~~-G~Gn~p~~~~~~l~~a~~~gi~VV~~--Sq~~~G-----------~v~~~y--- 280 (323)
T cd00411 220 GIS-AEAVRAFLRA-GYKGIVLAGY-GAGNVPTDLIDELEEAAERGVVVVNS--TQCEEG-----------AVTRDY--- 280 (323)
T ss_pred CCC-HHHHHHHHhC-CCCEEEEEeE-CCCCCCHHHHHHHHHHHHCCCEEEEe--cCCCCC-----------cccCCc---
Confidence 444 5688888754 4676665444 3333 458899998876 67787775 333333 221112
Q ss_pred HHHHHHHHHHcCCcccCCHHHHHHHH
Q 007327 285 AQAKNQALRDAGAVVPTSYEAFESAI 310 (608)
Q Consensus 285 a~~~~a~~~qaGvi~v~~~~el~~~~ 310 (608)
. +...++++|+|-..++.---..+
T Consensus 281 -~-~g~~l~~~G~i~~~~lt~e~A~~ 304 (323)
T cd00411 281 -E-VGGALAKYGIIASGDLNPEKARI 304 (323)
T ss_pred -c-cccchhhCCEEECCCCCHHHHHH
Confidence 0 11257889999988865433333
No 406
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=25.64 E-value=1.7e+02 Score=27.87 Aligned_cols=51 Identities=18% Similarity=0.319 Sum_probs=36.0
Q ss_pred HHHHHHHhhcCCCccEEEEEEe-cCCc--cHHHHHHHHHhCCCCCCEEEEEeCCCc
Q 007327 210 LSDHILRFNNIPQVKMMVVLGE-LGGR--DEYSLVEALKQGKVNKPVVAWVSGTCA 262 (608)
Q Consensus 210 ~~d~l~~l~~Dp~T~~I~ly~E-~g~~--~~~~f~~~~r~a~~~KPVvvlk~Grs~ 262 (608)
+.+-|.++.+++.++.|.+|+- +|.. ++....+.+++ .++||+++-.|...
T Consensus 17 ~~~~L~~l~~~~~~~~i~l~InSpGG~v~~~~~i~~~i~~--~~~~v~~~~~g~aa 70 (162)
T cd07013 17 FAAQLLFLGAVNPEKDIYLYINSPGGDVFAGMAIYDTIKF--IKADVVTIIDGLAA 70 (162)
T ss_pred HHHHHHHHhcCCCCCCEEEEEECCCCcHHHHHHHHHHHHh--cCCCceEEEEeehh
Confidence 4566778899999999999999 2222 34566667776 45788888766544
No 407
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=25.64 E-value=1.1e+02 Score=31.25 Aligned_cols=53 Identities=15% Similarity=0.221 Sum_probs=31.0
Q ss_pred HHHHHHHhhcCCCccEEEEEEecCCc-----c--------HHHHH----HHHHhC-CCCCCEEEEEeCCCcc
Q 007327 210 LSDHILRFNNIPQVKMMVVLGELGGR-----D--------EYSLV----EALKQG-KVNKPVVAWVSGTCAR 263 (608)
Q Consensus 210 ~~d~l~~l~~Dp~T~~I~ly~E~g~~-----~--------~~~f~----~~~r~a-~~~KPVvvlk~Grs~~ 263 (608)
+.+.++.+.+||++|+|++-.+ |-. | ...+. +..++. ...||||+..-|..-.
T Consensus 32 l~~~l~~~~~~~~vr~vVl~g~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~G 102 (251)
T TIGR03189 32 LSAALGEHLEDSALRAVLLDAE-GPHFSFGASVAEHMPDQCAAMLASLHKLVIAMLDSPVPILVAVRGQCLG 102 (251)
T ss_pred HHHHHHHHHcCCCceEEEEECC-CCceecCcChhhhCchhHHHHHHHHHHHHHHHHhCCCCEEEEecCeeee
Confidence 4456666777777777777766 410 0 11222 222333 3689999998776653
No 408
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=25.50 E-value=5.4e+02 Score=27.16 Aligned_cols=85 Identities=12% Similarity=0.067 Sum_probs=53.8
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhcCCceeEEeecCCCCCCCCCHHHHHHHhhcCCCccEE-EEEEe--cCCc-cHHHHH
Q 007327 166 RPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMM-VVLGE--LGGR-DEYSLV 241 (608)
Q Consensus 166 ~~G~valvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~T~~I-~ly~E--~g~~-~~~~f~ 241 (608)
.+|.--++...|..+..+...+...|+-+..+ ....+- .++..++.+.+.++++++.| +.+.| .|.. +-+++.
T Consensus 78 ~~~~~vlv~~~~~~~~~~~~~~~~~g~~~~~i-~~~~~~--~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~~~~i~ 154 (368)
T PRK13479 78 PRDGKVLVPDNGAYGARIAQIAEYLGIAHVVL-DTGEDE--PPDAAEVEAALAADPRITHVALVHCETTTGILNPLDEIA 154 (368)
T ss_pred CCCCeEEEEeCCchHHHHHHHHHHcCCcEEEE-ECCCCC--CCCHHHHHHHHHhCCCCcEEEEEcccCccccccCHHHHH
Confidence 45666666667877776556667778776644 444333 57788888888877888754 56665 1222 335677
Q ss_pred HHHHhCCCCCCEEE
Q 007327 242 EALKQGKVNKPVVA 255 (608)
Q Consensus 242 ~~~r~a~~~KPVvv 255 (608)
+.+++ .+.+||+
T Consensus 155 ~l~~~--~~~~liv 166 (368)
T PRK13479 155 AVAKR--HGKRLIV 166 (368)
T ss_pred HHHHH--cCCEEEE
Confidence 77775 3455443
No 409
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=25.09 E-value=1.1e+02 Score=32.37 Aligned_cols=38 Identities=24% Similarity=0.208 Sum_probs=24.9
Q ss_pred CccEEEEeccChhcHHHHHHHhcCC-CCCE-EEEecCCCCH
Q 007327 78 MADVFINFSSFRSAAASSMAALKQP-TIRV-VAIIAEGVPE 116 (608)
Q Consensus 78 ~vDlavi~vp~~~~~~~~le~~~~~-gv~~-~viis~Gf~e 116 (608)
+.|+++++|+... ...+++.+... .-.. ++.++.|+..
T Consensus 73 ~~D~vil~vk~~~-~~~~~~~l~~~~~~~~iii~~~nG~~~ 112 (341)
T PRK08229 73 TADLVLVTVKSAA-TADAAAALAGHARPGAVVVSFQNGVRN 112 (341)
T ss_pred CCCEEEEEecCcc-hHHHHHHHHhhCCCCCEEEEeCCCCCc
Confidence 4899999999976 56777776532 1112 3345678764
No 410
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=25.08 E-value=3.4e+02 Score=29.00 Aligned_cols=102 Identities=14% Similarity=0.008 Sum_probs=55.1
Q ss_pred HHHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHh-CCCeEEcCCcccccccCcccccccCCcccccccccCCCCCc-
Q 007327 92 AASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARS-NNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGS- 169 (608)
Q Consensus 92 ~~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~-~g~rvlGPNc~Gi~~~~~~~l~~~~~~~~~~~p~~~~~~G~- 169 (608)
+..+++.+.+++++.++++..|-+-..-.....+..+ .++.+. ++.+..... .......++.
T Consensus 32 l~~~~~~l~~~~~~~I~~~g~GsS~~aa~~~~~~~~k~~~i~v~------~~~~~~~~~----------~~~~~~~~~~l 95 (340)
T PRK11382 32 VHAIVEEMVKRDIDRIYFVACGSPLNAAQTAKHLADRFSDLQVY------AISGWEFCD----------NTPYRLDDRCA 95 (340)
T ss_pred HHHHHHHHHhCCCCEEEEEEechHHHHHHHHHHHHHHHcCCCeE------EeccHHHHh----------cCCcCCCCCCE
Confidence 4567777777789999999998776533333333322 222211 111211000 0001124555
Q ss_pred EEEEecChhHH--HHHHHHHHhcCCceeEEeecCCCCCCCCCHHHHH
Q 007327 170 VGFVSKSGGMS--NELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHI 214 (608)
Q Consensus 170 valvSQSG~l~--~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l 214 (608)
+=.|||||.-. ...+.+++++| ..+|++=|.. +..++.+-
T Consensus 96 vI~iS~SGeT~e~i~al~~ak~~G---a~~I~IT~~~--~S~L~~~a 137 (340)
T PRK11382 96 VIGVSDYGKTEEVIKALELGRACG---ALTAAFTKRA--DSPITSAA 137 (340)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHcC---CeEEEEECCC--CChHHHhC
Confidence 55689999654 34566777776 3666665655 55555443
No 411
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=24.95 E-value=1.2e+02 Score=36.01 Aligned_cols=92 Identities=20% Similarity=0.206 Sum_probs=63.2
Q ss_pred HHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCeEE---------------cCCcccccccCc--ccccccCCcc
Q 007327 94 SSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVI---------------GPATVGGIQAGA--FKIGDTAGTI 156 (608)
Q Consensus 94 ~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~rvl---------------GPNc~Gi~~~~~--~~l~~~~~~~ 156 (608)
.+.|+.. .|..++++|.+=+.+.+.++|.++|++.||-.+ |+.-+||-|-+. +.+. ++.+
T Consensus 125 QI~ea~~-~GADavLLI~~~L~~~~l~~l~~~a~~lGme~LvEvh~~~el~~a~~~ga~iiGINnRdL~tf~vd-~~~t- 201 (695)
T PRK13802 125 QIWEARA-HGADLVLLIVAALDDAQLKHLLDLAHELGMTVLVETHTREEIERAIAAGAKVIGINARNLKDLKVD-VNKY- 201 (695)
T ss_pred HHHHHHH-cCCCEeehhHhhcCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEEeCCCCccceeC-HHHH-
Confidence 4545444 899999999988888788999999999998765 888889876543 1110 0111
Q ss_pred cccccccCCCCCcEEEEecChhHHHHHHHHHHhcC
Q 007327 157 DNIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVT 191 (608)
Q Consensus 157 ~~~~p~~~~~~G~valvSQSG~l~~~~~~~~~~~g 191 (608)
....| .-|..+-+||-||--..+=+..+.+.|
T Consensus 202 ~~L~~---~ip~~~~~VsESGI~~~~d~~~l~~~G 233 (695)
T PRK13802 202 NELAA---DLPDDVIKVAESGVFGAVEVEDYARAG 233 (695)
T ss_pred HHHHh---hCCCCcEEEEcCCCCCHHHHHHHHHCC
Confidence 11112 346789999999987766666666554
No 412
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=24.92 E-value=7.8e+02 Score=25.41 Aligned_cols=152 Identities=13% Similarity=0.043 Sum_probs=82.8
Q ss_pred HHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCeEEcCCccc--cc-c--cCcccccccCCcc-------ccccc
Q 007327 94 SSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVG--GI-Q--AGAFKIGDTAGTI-------DNIIH 161 (608)
Q Consensus 94 ~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~rvlGPNc~G--i~-~--~~~~~l~~~~~~~-------~~~~p 161 (608)
.+.+.+.+.+|..++- ++.......+.+.++++++.+|.|++-. +. + +..+++ ..+. .....
T Consensus 62 ~~~~li~~~~v~aviG---~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~~~~~~~~~~f~~---~~~~~~~~~~~~~~~~ 135 (345)
T cd06338 62 AYERLITQDKVDFLLG---PYSSGLTLAAAPVAEKYGVPMVAGSGASDSIFAQGFKYVFGT---LPPASQYAKSLLEMLV 135 (345)
T ss_pred HHHHHHhhcCccEEec---CCcchhHHHHHHHHHHhCCcEEecCCCCchHhhcCCceEEEe---cCchHHHHHHHHHHHH
Confidence 3334444345554433 2322344556778888889888886532 11 1 000111 0000 00000
Q ss_pred ccCCC--CCcEEEEecChhHHHHHH----HHHHhcCCceeEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCc
Q 007327 162 CKLYR--PGSVGFVSKSGGMSNELY----NTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGR 235 (608)
Q Consensus 162 ~~~~~--~G~valvSQSG~l~~~~~----~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~T~~I~ly~E~g~~ 235 (608)
... ..+|+++.++...+..+. +.+++.|+-+......-. . ..++...+.-+.+ .+.++|++... ..
T Consensus 136 --~~~~~~~~v~~v~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~-~--~~d~~~~v~~l~~-~~~d~i~~~~~--~~ 207 (345)
T cd06338 136 --ALDPRPKKVAILYADDPFSQDVAEGAREKAEAAGLEVVYDETYPP-G--TADLSPLISKAKA-AGPDAVVVAGH--FP 207 (345)
T ss_pred --hcCCCCceEEEEecCCcccHHHHHHHHHHHHHcCCEEEEEeccCC-C--ccchHHHHHHHHh-cCCCEEEECCc--ch
Confidence 112 468999999987665553 445556665554333321 1 3567777777754 44567776654 34
Q ss_pred cHHHHHHHHHhCCCCCCEEEEEeC
Q 007327 236 DEYSLVEALKQGKVNKPVVAWVSG 259 (608)
Q Consensus 236 ~~~~f~~~~r~a~~~KPVvvlk~G 259 (608)
+-..|++.+++...+.|++..-.+
T Consensus 208 ~~~~~~~~~~~~g~~~~~~~~~~~ 231 (345)
T cd06338 208 DAVLLVRQMKELGYNPKALYMTVG 231 (345)
T ss_pred hHHHHHHHHHHcCCCCCEEEEecC
Confidence 678899998887666777765443
No 413
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=24.86 E-value=1.6e+02 Score=30.07 Aligned_cols=54 Identities=20% Similarity=0.399 Sum_probs=31.1
Q ss_pred HHHHHHHhhcCCCccEEEEEEecCCc---c--------------HHHHH----HHHHhC-CCCCCEEEEEeCCCccC
Q 007327 210 LSDHILRFNNIPQVKMMVVLGELGGR---D--------------EYSLV----EALKQG-KVNKPVVAWVSGTCARL 264 (608)
Q Consensus 210 ~~d~l~~l~~Dp~T~~I~ly~E~g~~---~--------------~~~f~----~~~r~a-~~~KPVvvlk~Grs~~g 264 (608)
+.+.++.+.+||++|+|++..+ |-+ . .+.|. +..++. ...||||+..-|-.-.|
T Consensus 39 l~~~l~~~~~d~~vr~vVltg~-g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg 114 (256)
T PRK06143 39 LTQALRWLAADPDVRVLVLRGA-GEKAFIGGADIKEMATLDQASAEAFISRLRDLCDAVRHFPVPVIARIPGWCLGG 114 (256)
T ss_pred HHHHHHHHhcCCCcEEEEEEeC-CCCcccCCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEeeh
Confidence 3456666667777777777776 411 1 11122 222332 36899999987766543
No 414
>PRK05869 enoyl-CoA hydratase; Validated
Probab=24.69 E-value=1.1e+02 Score=30.70 Aligned_cols=16 Identities=31% Similarity=0.451 Sum_probs=13.0
Q ss_pred CCCCEEEEEeCCCccC
Q 007327 249 VNKPVVAWVSGTCARL 264 (608)
Q Consensus 249 ~~KPVvvlk~Grs~~g 264 (608)
..||||+..-|..-.|
T Consensus 98 ~~kPvIAav~G~a~Gg 113 (222)
T PRK05869 98 IPKPTVAAITGYALGA 113 (222)
T ss_pred CCCCEEEEEcCEeecH
Confidence 6899999998877654
No 415
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=24.64 E-value=1.1e+02 Score=31.75 Aligned_cols=16 Identities=31% Similarity=0.474 Sum_probs=12.8
Q ss_pred CCCCEEEEEeCCCccC
Q 007327 249 VNKPVVAWVSGTCARL 264 (608)
Q Consensus 249 ~~KPVvvlk~Grs~~g 264 (608)
..||||+..-|..-.|
T Consensus 108 ~~kPvIaav~G~a~Gg 123 (276)
T PRK05864 108 LHQPVIAAVNGPAIGG 123 (276)
T ss_pred CCCCEEEEECCEeehh
Confidence 6899999988776654
No 416
>PLN02306 hydroxypyruvate reductase
Probab=24.61 E-value=3.3e+02 Score=29.93 Aligned_cols=61 Identities=21% Similarity=0.203 Sum_probs=37.1
Q ss_pred cCCHHHHhhcCCCccEEEEeccChhcHH-----HHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCe
Q 007327 66 HSTVEAACAAHPMADVFINFSSFRSAAA-----SSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKV 132 (608)
Q Consensus 66 y~sv~~i~~~~p~vDlavi~vp~~~~~~-----~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~r 132 (608)
+.+++|+.. +.|++++.+|-..... ..++.+. -.+++|-++-=+-.+++.|.+..++..+.
T Consensus 227 ~~~L~ell~---~sDiV~lh~Plt~~T~~lin~~~l~~MK---~ga~lIN~aRG~lVDe~AL~~AL~sg~i~ 292 (386)
T PLN02306 227 ASSMEEVLR---EADVISLHPVLDKTTYHLINKERLALMK---KEAVLVNASRGPVIDEVALVEHLKANPMF 292 (386)
T ss_pred cCCHHHHHh---hCCEEEEeCCCChhhhhhcCHHHHHhCC---CCeEEEECCCccccCHHHHHHHHHhCCee
Confidence 468999876 4799999998653332 2334443 23444444422333788888887775443
No 417
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=24.48 E-value=5.6e+02 Score=27.50 Aligned_cols=250 Identities=15% Similarity=0.138 Sum_probs=125.8
Q ss_pred CcEEEEEcCC--ch-HHHHHhhCcccCCCCCCcEEEEeCCCCCCcc-------ccccCceeecccccCCHHHHhhcCCCc
Q 007327 10 TTQALFYNYK--QL-PIQRMLDFDFLCGRETPSVAGIINPGAEGFQ-------KLFFGQEEIAIPVHSTVEAACAAHPMA 79 (608)
Q Consensus 10 ~s~avv~g~~--~~-~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~-------~~~~g~ev~G~~~y~sv~~i~~~~p~v 79 (608)
++|-|.||++ |+ .++.|++.||. +| .+++-..+... +++.| .+.=...+.++..+. ++
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~~------vv-V~DNL~~g~~~~v~~~~~~f~~g----Di~D~~~L~~vf~~~-~i 68 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGHE------VV-VLDNLSNGHKIALLKLQFKFYEG----DLLDRALLTAVFEEN-KI 68 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCCCe------EE-EEecCCCCCHHHhhhccCceEEe----ccccHHHHHHHHHhc-CC
Confidence 4677788754 55 88899998875 23 34434333210 11222 233333456666665 58
Q ss_pred cEEEEeccChhc-----------------HHHHHHHhcCCCCCEEEEecC----CCCHH---------------------
Q 007327 80 DVFINFSSFRSA-----------------AASSMAALKQPTIRVVAIIAE----GVPEA--------------------- 117 (608)
Q Consensus 80 Dlavi~vp~~~~-----------------~~~~le~~~~~gv~~~viis~----Gf~e~--------------------- 117 (608)
|.++=+.....+ ...++++|.+.||+.+|--|+ |-++.
T Consensus 69 daViHFAa~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vFSStAavYG~p~~~PI~E~~~~~p~NPYG~sKlm 148 (329)
T COG1087 69 DAVVHFAASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSSTAAVYGEPTTSPISETSPLAPINPYGRSKLM 148 (329)
T ss_pred CEEEECccccccchhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEEEecchhhcCCCCCcccCCCCCCCCCCcchhHHHH
Confidence 887644322211 245789999999998876544 44332
Q ss_pred HHHHHHHHHHhCCCeEEcCCcccccccCcccccccCCcccccccccCCCCCcEEEEecChhHHHHHHHHHHhcCCceeEE
Q 007327 118 DTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEG 197 (608)
Q Consensus 118 ~~~~l~~~a~~~g~rvlGPNc~Gi~~~~~~~l~~~~~~~~~~~p~~~~~~G~valvSQSG~l~~~~~~~~~~~g~G~s~~ 197 (608)
.|+-|.+.++.++++++ ++=.+|+.- + .+.|.+|=-..- .+.++-.+.+.-+|..-.
T Consensus 149 ~E~iL~d~~~a~~~~~v---~LRYFN~aG-------A----------~~~G~iGe~~~~---~thLip~~~q~A~G~r~~ 205 (329)
T COG1087 149 SEEILRDAAKANPFKVV---ILRYFNVAG-------A----------CPDGTLGQRYPG---ATLLIPVAAEAALGKRDK 205 (329)
T ss_pred HHHHHHHHHHhCCCcEE---EEEeccccc-------C----------CCCCccCCCCCC---cchHHHHHHHHHhcCCce
Confidence 35667778888887643 222222211 0 011111111100 022222222223333332
Q ss_pred eec-CCCC----------CC-CCCHHH----HHHHhhcCCCccEEEEEEecCCc---cHHHHHHHHHhCCCCCCEEEEEe
Q 007327 198 IAI-GGDV----------FP-GSTLSD----HILRFNNIPQVKMMVVLGELGGR---DEYSLVEALKQGKVNKPVVAWVS 258 (608)
Q Consensus 198 vs~-Gn~~----------~~-dv~~~d----~l~~l~~Dp~T~~I~ly~E~g~~---~~~~f~~~~r~a~~~KPVvvlk~ 258 (608)
+++ |++= ++ -+|++| .++||.+ ....-+.=. |-. .-++.++++++.+ ++|+-+-..
T Consensus 206 l~ifG~DY~T~DGT~iRDYIHV~DLA~aH~~Al~~L~~-~g~~~~~NL---G~G~G~SV~evi~a~~~vt-g~~ip~~~~ 280 (329)
T COG1087 206 LFIFGDDYDTKDGTCIRDYIHVDDLADAHVLALKYLKE-GGSNNIFNL---GSGNGFSVLEVIEAAKKVT-GRDIPVEIA 280 (329)
T ss_pred eEEeCCCCCCCCCCeeeeeeehhHHHHHHHHHHHHHHh-CCceeEEEc---cCCCceeHHHHHHHHHHHh-CCcCceeeC
Confidence 222 3321 00 122332 4678887 444322111 222 2367778888876 344444333
Q ss_pred CCCccCcccccccCCCCCcCCCCcchHHHHHHHHHHcCCcccC-CHHHHHHHHHHHHH
Q 007327 259 GTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPT-SYEAFESAIKETFE 315 (608)
Q Consensus 259 Grs~~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaGvi~v~-~~~el~~~~~~~~~ 315 (608)
.|-+ +...++..+. +.+-++.|.-.-. |+++++..+....+
T Consensus 281 ~RR~---------GDpa~l~Ad~-------~kA~~~Lgw~p~~~~L~~ii~~aw~W~~ 322 (329)
T COG1087 281 PRRA---------GDPAILVADS-------SKARQILGWQPTYDDLEDIIKDAWDWHQ 322 (329)
T ss_pred CCCC---------CCCceeEeCH-------HHHHHHhCCCcccCCHHHHHHHHHHHhh
Confidence 3333 2333444333 2566888998777 99999998876665
No 418
>PRK08960 hypothetical protein; Provisional
Probab=24.42 E-value=4.5e+02 Score=28.19 Aligned_cols=69 Identities=7% Similarity=-0.068 Sum_probs=36.8
Q ss_pred cccCCHHHHhhcCCCccEEEEeccCh----hcHHHHHHHhcCCCCCEEEEecC----CC--CHHHHHHHHHHHHhCCCeE
Q 007327 64 PVHSTVEAACAAHPMADVFINFSSFR----SAAASSMAALKQPTIRVVAIIAE----GV--PEADTKQLIAYARSNNKVV 133 (608)
Q Consensus 64 ~~y~sv~~i~~~~p~vDlavi~vp~~----~~~~~~le~~~~~gv~~~viis~----Gf--~e~~~~~l~~~a~~~g~rv 133 (608)
|+|+......... ...+..+.+... -.++.+.+.+. .+.+.+++.+- |. +....++|.++|+++|+.+
T Consensus 124 p~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~~~-~~~~~i~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~l 201 (387)
T PRK08960 124 PGYPCNRHFLRLV-EGAAQLVPVGPDSRYQLTPALVERHWN-ADTVGALVASPANPTGTLLSRDELAALSQALRARGGHL 201 (387)
T ss_pred CCCcchHHHHHhc-CCeEEEEecCcccCCCCCHHHHHHHhC-ccceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEE
Confidence 5666554443322 134444444322 12344444444 56666665443 32 3346788999999999876
Q ss_pred E
Q 007327 134 I 134 (608)
Q Consensus 134 l 134 (608)
+
T Consensus 202 i 202 (387)
T PRK08960 202 V 202 (387)
T ss_pred E
Confidence 5
No 419
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=24.19 E-value=6.8e+02 Score=24.42 Aligned_cols=73 Identities=5% Similarity=0.007 Sum_probs=40.6
Q ss_pred ccccCCHHHHhhcCCCccEEEEeccC-hhcHHHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCeEEcCCc
Q 007327 63 IPVHSTVEAACAAHPMADVFINFSSF-RSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPAT 138 (608)
Q Consensus 63 ~~~y~sv~~i~~~~p~vDlavi~vp~-~~~~~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~rvlGPNc 138 (608)
...+..+++...+.+ .++.+..... .......++.+.+.++.++++.+... ....+.++.+++.++.++-.++
T Consensus 15 ~~~~~~i~~~~~~~g-~~v~~~~~~~~~~~~~~~~~~~~~~~~dgii~~~~~~--~~~~~~l~~l~~~~ipvv~~~~ 88 (268)
T cd06323 15 VTLKDGAQKEAKELG-YELTVLDAQNDAAKQLNDIEDLITRGVDAIIINPTDS--DAVVPAVKAANEAGIPVFTIDR 88 (268)
T ss_pred HHHHHHHHHHHHHcC-ceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCh--HHHHHHHHHHHHCCCcEEEEcc
Confidence 345556667666553 6775543221 11123566666667898888764322 2223445556778888765543
No 420
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=24.18 E-value=2.4e+02 Score=28.45 Aligned_cols=100 Identities=6% Similarity=0.048 Sum_probs=58.9
Q ss_pred CcEEEEEcCCch----HHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEe
Q 007327 10 TTQALFYNYKQL----PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINF 85 (608)
Q Consensus 10 ~s~avv~g~~~~----~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDlavi~ 85 (608)
.-|+|+-+.+-. +.+.|.+.|+. .|- +.|- .. -.+.+|.++..+.| ++. |
T Consensus 14 ~vI~Vlr~~~~e~a~~~a~Ali~gGi~------~IE-ITl~-sp--------------~a~e~I~~l~~~~p--~~l-I- 67 (211)
T COG0800 14 PVVPVIRGDDVEEALPLAKALIEGGIP------AIE-ITLR-TP--------------AALEAIRALAKEFP--EAL-I- 67 (211)
T ss_pred CeeEEEEeCCHHHHHHHHHHHHHcCCC------eEE-EecC-CC--------------CHHHHHHHHHHhCc--ccE-E-
Confidence 456666554433 77888888764 221 1111 11 24556776655543 443 2
Q ss_pred ccChhcH-HHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCeEEcCCcccccccCc
Q 007327 86 SSFRSAA-ASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVGGIQAGA 146 (608)
Q Consensus 86 vp~~~~~-~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~rvlGPNc~Gi~~~~~ 146 (608)
-+..++ +.-++++.++|.+.+ +|-||.+ ++.+.|+++|+.+ |.|+++|..
T Consensus 68 -GAGTVL~~~q~~~a~~aGa~fi--VsP~~~~----ev~~~a~~~~ip~----~PG~~TptE 118 (211)
T COG0800 68 -GAGTVLNPEQARQAIAAGAQFI--VSPGLNP----EVAKAANRYGIPY----IPGVATPTE 118 (211)
T ss_pred -ccccccCHHHHHHHHHcCCCEE--ECCCCCH----HHHHHHHhCCCcc----cCCCCCHHH
Confidence 222211 234455666888764 4888865 7899999999954 577888765
No 421
>PLN02368 alanine transaminase
Probab=24.14 E-value=4.6e+02 Score=28.81 Aligned_cols=75 Identities=16% Similarity=0.259 Sum_probs=43.0
Q ss_pred ccccCCHHHHhhcCCCccEEEEeccCh------hcHHHHHHHhcC---C--CCCEEEEecC----C--CCHHHHHHHHHH
Q 007327 63 IPVHSTVEAACAAHPMADVFINFSSFR------SAAASSMAALKQ---P--TIRVVAIIAE----G--VPEADTKQLIAY 125 (608)
Q Consensus 63 ~~~y~sv~~i~~~~p~vDlavi~vp~~------~~~~~~le~~~~---~--gv~~~viis~----G--f~e~~~~~l~~~ 125 (608)
-|+|+....+....+ .. ++.+|-. -.++.+.+.+.. + ++|.+++.+- | +++...++|.++
T Consensus 162 ~P~Y~~y~~~~~~~g-~~--~v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~ 238 (407)
T PLN02368 162 VPQYPLYSATISLLG-GT--LVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKF 238 (407)
T ss_pred CCCCccHHHHHHHcC-CE--EEEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHH
Confidence 467777766554331 33 3444321 123334344431 2 5777776653 3 455678899999
Q ss_pred HHhCCCeEEcCCccc
Q 007327 126 ARSNNKVVIGPATVG 140 (608)
Q Consensus 126 a~~~g~rvlGPNc~G 140 (608)
|+++++.||==++.+
T Consensus 239 a~~~~~~II~DE~Y~ 253 (407)
T PLN02368 239 CYQERLVLLGDEVYQ 253 (407)
T ss_pred HHHcCCEEEEEcccc
Confidence 999999887554433
No 422
>PRK11096 ansB L-asparaginase II; Provisional
Probab=24.08 E-value=4.1e+02 Score=28.77 Aligned_cols=102 Identities=12% Similarity=0.105 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHhhcCCCccEEEEEEecCCccHHHHHHHHHhCC-CCCCEEE---EEeCCCccCcccccccCCCCCcCCC
Q 007327 205 FPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGK-VNKPVVA---WVSGTCARLFKSEVQFGHAGAKSGG 280 (608)
Q Consensus 205 ~~dv~~~d~l~~l~~Dp~T~~I~ly~E~g~~~~~~f~~~~r~a~-~~KPVvv---lk~Grs~~g~~~~aa~sHtgalag~ 280 (608)
+++.+ .++++++.+.+ .+.|++..=-...-+.++.++++++. +++|||+ .--|+...+ ..+...-.|.+.+.
T Consensus 241 ~pG~~-~~~l~~~l~~~-~~GiVl~g~G~Gn~~~~~~~~l~~a~~~GipVV~~Sqc~~G~v~~~--~~~~l~~~G~I~~g 316 (347)
T PRK11096 241 YANAS-DLPAKALVDAG-YDGIVSAGVGNGNLYKTVFDTLATAAKNGVAVVRSSRVPTGATTQD--AEVDDAKYGFVASG 316 (347)
T ss_pred CCCCC-HHHHHHHHhcc-CCEEEEEeECCCCCCHHHHHHHHHHHHCCCEEEEeCCCCCCCcCcc--cccchhhCCEEECC
Q ss_pred CcchHHHHHHHHHHcCCcccCCHHHHHHHHHH
Q 007327 281 EMESAQAKNQALRDAGAVVPTSYEAFESAIKE 312 (608)
Q Consensus 281 ~~~~a~~~~a~~~qaGvi~v~~~~el~~~~~~ 312 (608)
+....++.-.+.=-.|. ..+.+|+-+....
T Consensus 317 ~lt~ekArikL~l~L~~--~~~~~~i~~~f~~ 346 (347)
T PRK11096 317 TLNPQKARVLLQLALTQ--TKDPQQIQQMFNQ 346 (347)
T ss_pred CCCHHHHHHHHHHHHcC--CCCHHHHHHHHhh
No 423
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=24.07 E-value=5.7e+02 Score=23.55 Aligned_cols=145 Identities=10% Similarity=-0.046 Sum_probs=65.2
Q ss_pred HHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHH-HHhCCCeEEcCCcccccccCcccccccCCcccccccccCCCCCcEE
Q 007327 93 ASSMAALKQPTIRVVAIIAEGVPEADTKQLIAY-ARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVG 171 (608)
Q Consensus 93 ~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~-a~~~g~rvlGPNc~Gi~~~~~~~l~~~~~~~~~~~p~~~~~~G~va 171 (608)
+.+.+.+.+.||+.+.-+.++..-..-+.+.+. .++.+++++.+..=+- +.+...-. .. ..+++.
T Consensus 3 e~i~~~L~~~gv~~vfg~PG~~~~~~~~~l~~~~~~~~~i~~i~~~~E~~------------A~~~A~g~-~r-~~~~v~ 68 (160)
T cd07034 3 EAVARGALAAGVDVVAAYPITPSTEIAETLAKAVLGELGGVVVQAESEHA------------AAEAAIGA-SA-AGARAM 68 (160)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCHHHHHHHHHHHhccCCCcEEEEeCCHHH------------HHHHHHHH-Hh-hCCcEE
Confidence 456677777888888877765433233333211 0135677665532110 11100000 00 123377
Q ss_pred EEecChhHHHHHHHHHHhcCCceeEEeecCCCCCCCC-----CHHHHHHHhhcCCCccEEEEEEecCCccHHHHHHHHHh
Q 007327 172 FVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGS-----TLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQ 246 (608)
Q Consensus 172 lvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv-----~~~d~l~~l~~Dp~T~~I~ly~E~g~~~~~~f~~~~r~ 246 (608)
++++..++...+-..+....-+.--++=+|....... ...|+-......| ||.. . ...+++++.+.+++
T Consensus 69 ~~~~gpG~~n~~~~l~~a~~~~~P~v~i~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~-~~~~~~~~~~~~~~ 142 (160)
T cd07034 69 TATSGPGLNLMAEALYLAAGAELPLVIVVAQRPGPSTGLPKPDQSDLMAARYGGH-PWPV----L-APSSVQEAFDLALE 142 (160)
T ss_pred EeeCcchHHHHHHHHHHHHhCCCCEEEEEeeCCCCCCCCCCcCcHHHHHHHhCCC-CEEE----E-eCCCHHHHHHHHHH
Confidence 7777777766554433333333333333344332222 2344333333445 5532 2 34455544443333
Q ss_pred ----CC-CCCCEEEEE
Q 007327 247 ----GK-VNKPVVAWV 257 (608)
Q Consensus 247 ----a~-~~KPVvvlk 257 (608)
+. .++||+++-
T Consensus 143 A~~~a~~~~~Pv~l~~ 158 (160)
T cd07034 143 AFELAEKYRLPVIVLS 158 (160)
T ss_pred HHHHHHHhCCCEEEEc
Confidence 22 237998764
No 424
>PRK05568 flavodoxin; Provisional
Probab=24.00 E-value=2.9e+02 Score=24.97 Aligned_cols=58 Identities=10% Similarity=0.016 Sum_probs=38.5
Q ss_pred ccEEEEeccChh-------cHHHHHHHhcC--CCCCEEEEecCCCC-HHHHHHHHHHHHhCCCeEEcC
Q 007327 79 ADVFINFSSFRS-------AAASSMAALKQ--PTIRVVAIIAEGVP-EADTKQLIAYARSNNKVVIGP 136 (608)
Q Consensus 79 vDlavi~vp~~~-------~~~~~le~~~~--~gv~~~viis~Gf~-e~~~~~l~~~a~~~g~rvlGP 136 (608)
.|..++..|... .+...++.+.. +|-+.+++-|.|.+ ....+.+.+..++.|.+++|+
T Consensus 49 ~d~iilgsp~y~~~~~~~~~~~~f~~~~~~~~~~k~~~~f~t~G~~~~~~~~~~~~~l~~~g~~~~~~ 116 (142)
T PRK05568 49 ADVVALGSPAMGDEVLEEGEMEPFVESISSLVKGKKLVLFGSYGWGDGEWMRDWVERMEGYGANLVNE 116 (142)
T ss_pred CCEEEEECCccCcccccchhHHHHHHHhhhhhCCCEEEEEEccCCCCChHHHHHHHHHHHCCCEEeCC
Confidence 688888888532 23455555532 45556666666775 335566777788899999998
No 425
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=23.87 E-value=1.3e+02 Score=30.72 Aligned_cols=54 Identities=20% Similarity=0.312 Sum_probs=31.5
Q ss_pred HHHHHHHhhcCCCccEEEEEEecCCc-----c-------------HHHHHHHHHhC-CCCCCEEEEEeCCCccC
Q 007327 210 LSDHILRFNNIPQVKMMVVLGELGGR-----D-------------EYSLVEALKQG-KVNKPVVAWVSGTCARL 264 (608)
Q Consensus 210 ~~d~l~~l~~Dp~T~~I~ly~E~g~~-----~-------------~~~f~~~~r~a-~~~KPVvvlk~Grs~~g 264 (608)
+.+.++.+.+||++|+|++..+ |-. | ...|.+..++. ...||||+..-|..-.|
T Consensus 36 l~~~l~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~Gg 108 (257)
T PRK05862 36 LGAALAAFDADEGIGAIVITGS-EKAFAAGADIKEMADLSFMDVYKGDYITNWEKVARIRKPVIAAVAGYALGG 108 (257)
T ss_pred HHHHHHHHhhCCCeeEEEEECC-CCceECCcChHhHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEccEEeHH
Confidence 3455555666777777777766 410 0 01233333333 36899999988776544
No 426
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge
Probab=23.80 E-value=9.2e+02 Score=25.83 Aligned_cols=128 Identities=12% Similarity=0.096 Sum_probs=78.9
Q ss_pred CCCCHHHHHHHHHHHHhCCCeEEcCCccc--ccccCcccccccCCcccccccc---------cCCCCCcEEEEecChh--
Q 007327 112 EGVPEADTKQLIAYARSNNKVVIGPATVG--GIQAGAFKIGDTAGTIDNIIHC---------KLYRPGSVGFVSKSGG-- 178 (608)
Q Consensus 112 ~Gf~e~~~~~l~~~a~~~g~rvlGPNc~G--i~~~~~~~l~~~~~~~~~~~p~---------~~~~~G~valvSQSG~-- 178 (608)
+.........+..++.+.++.+|.|.|-. +-+... .-+|....|. ..+..-+|++|..+..
T Consensus 72 Gp~~S~~~~a~a~va~~~~iP~Is~~a~~~~lt~~~~------y~~f~r~~~~~~~~~~~~~~~~~w~~vaii~~~~~~~ 145 (382)
T cd06371 72 GPVNPGYCEAAALLAKEWDKALFSWGCVNYELDDVRS------YPTFARTLPSPSRVLFTVLRYFRWAHVAIVSSPQDIW 145 (382)
T ss_pred CCCCchHHHHHHHHHHhcCceEEecccCchhhcCccc------CCCceecCCCcHHHHHHHHHHCCCeEEEEEEecccch
Confidence 33433455667888999999999877642 221000 0011111110 1235678999987665
Q ss_pred --HHHHHHHHHHhcCCceeEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCC----ccHHHHHHHHHhCCC
Q 007327 179 --MSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGG----RDEYSLVEALKQGKV 249 (608)
Q Consensus 179 --l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~T~~I~ly~E~g~----~~~~~f~~~~r~a~~ 249 (608)
....+.+.+++.|+-+......-.. +.++.+.|.-+.+....++|++... .. .+.+.|++.+++...
T Consensus 146 ~~~~~~l~~~l~~~gi~v~~~~~~~~~---~~d~~~~L~~lk~~~~~~viv~~~~-~~~~~~~~~~~i~~qa~~~Gm 218 (382)
T cd06371 146 VETAQKLASALRAHGLPVGLVTSMGPD---EKGAREALKKVRSADRVRVVIMCMH-SVLIGGEEQRLLLETALEMGM 218 (382)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEEecCC---HHHHHHHHHHHhcCCCcEEEEEEee-ccccCcHHHHHHHHHHHHcCC
Confidence 3566777777788777665555322 4578888888887777788887665 21 455788888888653
No 427
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=23.79 E-value=6.4e+02 Score=25.88 Aligned_cols=113 Identities=15% Similarity=0.146 Sum_probs=58.9
Q ss_pred CCCCHHHHHHHHHHHHhCCCeEEcCCcccccccCcccccccCCcccccccccCCCCCcEEEEecC--hh----HHHHHHH
Q 007327 112 EGVPEADTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKS--GG----MSNELYN 185 (608)
Q Consensus 112 ~Gf~e~~~~~l~~~a~~~g~rvlGPNc~Gi~~~~~~~l~~~~~~~~~~~p~~~~~~G~valvSQS--G~----l~~~~~~ 185 (608)
.++++...+++.+.|++.|=+ ||... . .|. .-+.+.|+++..+ .. +...+-+
T Consensus 26 ~~vs~~tr~rV~~~a~~lgY~---pn~~a-----~-~l~-------------~~~~~~Igvv~~~~~~~f~~~l~~~i~~ 83 (329)
T TIGR01481 26 PNVKPATRKKVLEVIKRLDYR---PNAVA-----R-GLA-------------SKRTTTVGVIIPDISNIYYAELARGIED 83 (329)
T ss_pred CCCCHHHHHHHHHHHHHHCCC---CCHHH-----H-HHh-------------hCCCCEEEEEeCCCCchhHHHHHHHHHH
Confidence 367888899999999997753 44211 0 010 0022345555432 22 2333444
Q ss_pred HHHhcCCceeEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCccHHHHHHHHHhCCCCCCEEEE
Q 007327 186 TIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAW 256 (608)
Q Consensus 186 ~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~T~~I~ly~E~g~~~~~~f~~~~r~a~~~KPVvvl 256 (608)
.+.++|..+ .+...... .-...++++.+.+ ..+..|++.-. .. .....+.+++ .+.|||.+
T Consensus 84 ~~~~~g~~~--~i~~~~~~--~~~~~~~~~~l~~-~~vdGiIi~~~-~~--~~~~~~~l~~--~~iPvV~~ 144 (329)
T TIGR01481 84 IATMYKYNI--ILSNSDED--PEKEVQVLNTLLS-KQVDGIIFMGG-TI--TEKLREEFSR--SPVPVVLA 144 (329)
T ss_pred HHHHcCCEE--EEEeCCCC--HHHHHHHHHHHHh-CCCCEEEEeCC-CC--ChHHHHHHHh--cCCCEEEE
Confidence 555565544 44332221 1234456666654 56888887632 22 2334444444 57899987
No 428
>PRK04296 thymidine kinase; Provisional
Probab=23.62 E-value=2.4e+02 Score=27.36 Aligned_cols=49 Identities=8% Similarity=0.075 Sum_probs=29.2
Q ss_pred EEEEEEecCCccHHHHHHHHHhCC-CCCCEEEEEeCCC-ccCcccccccCCCC
Q 007327 225 MMVVLGELGGRDEYSLVEALKQGK-VNKPVVAWVSGTC-ARLFKSEVQFGHAG 275 (608)
Q Consensus 225 ~I~ly~E~g~~~~~~f~~~~r~a~-~~KPVvvlk~Grs-~~g~~~~aa~sHtg 275 (608)
.+++++++|-.---.++..+.++. .++.|+++|++-. ..+ .....+|-|
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~--~~~i~~~lg 54 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYG--EGKVVSRIG 54 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEecccccccc--CCcEecCCC
Confidence 456676745444445666666653 7889999997522 223 334566665
No 429
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=23.62 E-value=1.2e+02 Score=30.94 Aligned_cols=16 Identities=25% Similarity=0.343 Sum_probs=12.7
Q ss_pred CCCCEEEEEeCCCccC
Q 007327 249 VNKPVVAWVSGTCARL 264 (608)
Q Consensus 249 ~~KPVvvlk~Grs~~g 264 (608)
..||||+..-|..-.|
T Consensus 94 ~~kPvIaav~G~a~Gg 109 (249)
T PRK05870 94 CPLPTIAAVNGAAVGA 109 (249)
T ss_pred CCCCEEEEECCEeEch
Confidence 6899999987776543
No 430
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=23.47 E-value=1.4e+02 Score=30.64 Aligned_cols=54 Identities=19% Similarity=0.352 Sum_probs=31.3
Q ss_pred HHHHHHHhhcCCCccEEEEEEecCCc---c------------H---HHHH----HHHHhC-CCCCCEEEEEeCCCccC
Q 007327 210 LSDHILRFNNIPQVKMMVVLGELGGR---D------------E---YSLV----EALKQG-KVNKPVVAWVSGTCARL 264 (608)
Q Consensus 210 ~~d~l~~l~~Dp~T~~I~ly~E~g~~---~------------~---~~f~----~~~r~a-~~~KPVvvlk~Grs~~g 264 (608)
+.+.++.+.+||++++|++-.+ |-+ . + ..|. +..++. ...||||+..-|..-.|
T Consensus 40 l~~~l~~~~~d~~v~~vVltg~-g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg 116 (262)
T PRK06144 40 LAEICEAIAADPSIRAVVLRGA-GDKAFVAGTDIAQFRAFSTAEDAVAYERRIDRVLGALEQLRVPTIAAIAGACVGG 116 (262)
T ss_pred HHHHHHHHhcCCCceEEEEecC-CCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeeh
Confidence 4456666667777777777765 411 0 1 1122 222222 36899999998876544
No 431
>PRK08912 hypothetical protein; Provisional
Probab=23.21 E-value=6e+02 Score=27.13 Aligned_cols=69 Identities=16% Similarity=0.169 Sum_probs=38.2
Q ss_pred cccCCHHHHhhcCCCccEEEEeccC-h--hcHHHHHHHhcCCCCCEEEEecC----C--CCHHHHHHHHHHHHhCCCeEE
Q 007327 64 PVHSTVEAACAAHPMADVFINFSSF-R--SAAASSMAALKQPTIRVVAIIAE----G--VPEADTKQLIAYARSNNKVVI 134 (608)
Q Consensus 64 ~~y~sv~~i~~~~p~vDlavi~vp~-~--~~~~~~le~~~~~gv~~~viis~----G--f~e~~~~~l~~~a~~~g~rvl 134 (608)
|+|+....+....+ ..+..+.+.. . ...+++.+.+. .++|.+++.+- | ++....++|.++|+++++.|+
T Consensus 119 p~y~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii 196 (387)
T PRK08912 119 PLYDAYLPLIRRAG-GVPRLVRLEPPHWRLPRAALAAAFS-PRTKAVLLNNPLNPAGKVFPREELALLAEFCQRHDAVAI 196 (387)
T ss_pred CCchhhHHHHHHcC-CEEEEEecCcccCcCCHHHHHHHhC-ccceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCeEEE
Confidence 56666555544332 4444444432 1 11233434443 57776665532 2 344467889999999998776
No 432
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=23.14 E-value=1.2e+02 Score=27.45 Aligned_cols=42 Identities=17% Similarity=0.160 Sum_probs=36.3
Q ss_pred CCCHHHHHHHhhcCCCccEEEEEEecCCccHHHHHHHHHhCC
Q 007327 207 GSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGK 248 (608)
Q Consensus 207 dv~~~d~l~~l~~Dp~T~~I~ly~E~g~~~~~~f~~~~r~a~ 248 (608)
-++..++.+-+.+|-+-.-|+.+.|..-++|.+|++.+++.+
T Consensus 5 kl~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA 46 (120)
T cd03074 5 KLKPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVA 46 (120)
T ss_pred hccHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHH
Confidence 356788999999999999999999978889999999988854
No 433
>PRK08068 transaminase; Reviewed
Probab=23.09 E-value=4.9e+02 Score=27.88 Aligned_cols=70 Identities=13% Similarity=0.012 Sum_probs=39.1
Q ss_pred ccccCCHHHHhhcCCCccEEEEeccCh--h--cHHHHHHHhcCCCCCEEEEecC----C--CCHHHHHHHHHHHHhCCCe
Q 007327 63 IPVHSTVEAACAAHPMADVFINFSSFR--S--AAASSMAALKQPTIRVVAIIAE----G--VPEADTKQLIAYARSNNKV 132 (608)
Q Consensus 63 ~~~y~sv~~i~~~~p~vDlavi~vp~~--~--~~~~~le~~~~~gv~~~viis~----G--f~e~~~~~l~~~a~~~g~r 132 (608)
-|+|+......... .+.+.-+.+... . .++++.+.+. .++|.+++.+- | ++.+..++|.++|+++++.
T Consensus 125 ~P~y~~~~~~~~~~-g~~~~~i~~~~~~~~~~d~~~l~~~~~-~~~~~v~l~~P~NPTG~~~s~~~~~~l~~la~~~~~~ 202 (389)
T PRK08068 125 DPGYPDYLSGVALA-RAQFETMPLIAENNFLPDYTKIPEEVA-EKAKLMYLNYPNNPTGAVATKAFFEETVAFAKKHNIG 202 (389)
T ss_pred CCCCcchHHHHHhc-CCEEEEeecccccCCCCCHHHHHHhcc-ccceEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCeE
Confidence 35666655543322 134433333211 1 1345555554 57887776633 3 2344678899999999987
Q ss_pred EE
Q 007327 133 VI 134 (608)
Q Consensus 133 vl 134 (608)
|+
T Consensus 203 ii 204 (389)
T PRK08068 203 VV 204 (389)
T ss_pred EE
Confidence 76
No 434
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=23.01 E-value=1.4e+02 Score=31.75 Aligned_cols=48 Identities=6% Similarity=0.086 Sum_probs=35.0
Q ss_pred HHHHHHHhcCCCCCEEEEecCCCCH----H---HHHHHHHHHHhCCCe-EEcCCcc
Q 007327 92 AASSMAALKQPTIRVVAIIAEGVPE----A---DTKQLIAYARSNNKV-VIGPATV 139 (608)
Q Consensus 92 ~~~~le~~~~~gv~~~viis~Gf~e----~---~~~~l~~~a~~~g~r-vlGPNc~ 139 (608)
+.+.++++.+.|+|.++|+.=||-- + ...+.++.+++.|.. +.=.-|+
T Consensus 248 ~~~~l~~l~~~G~k~V~vvP~gFv~D~lETl~ei~~e~~~~~~~~G~~~~~~vp~l 303 (322)
T TIGR00109 248 TEELLEKLGEQGVQHIVVVPIGFTADHLETLYEIDEEYREVAEDAGGDKYQRCPAL 303 (322)
T ss_pred HHHHHHHHHHcCCceEEEECCcccccchhHHHhhhHHHHHHHHHcCCCeEEECCCC
Confidence 5678888888899999999999853 2 234556788888876 5545453
No 435
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=22.95 E-value=8.8e+02 Score=25.31 Aligned_cols=152 Identities=11% Similarity=0.163 Sum_probs=77.5
Q ss_pred HHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCeEEcCCccc--cccc-----CcccccccCCcc-ccccc---
Q 007327 93 ASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVG--GIQA-----GAFKIGDTAGTI-DNIIH--- 161 (608)
Q Consensus 93 ~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~rvlGPNc~G--i~~~-----~~~~l~~~~~~~-~~~~p--- 161 (608)
..+.+.+.+.+|.. +.+++.-.....+..+++++++.++.|-+-+ +..+ ..++++. +-.. .....
T Consensus 57 ~~a~~Li~~~~V~a---iiG~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~l~~~~~~~~~~Fr~~~-~~~~~~~~~a~~~ 132 (347)
T cd06335 57 QNAQELAADEKVVA---VLGGLHTPVALANLEFIQQNKIPLIGPWAAGTPITRNGAPPNYIFRVSA-DDSIQAPFLVDEA 132 (347)
T ss_pred HHHHHHhccCCeEE---EEcCCCCHHHHhhhHHHHhcCCcEEecCCCCcccccCCCCCCCEEEecc-ChHHHHHHHHHHH
Confidence 34444444335532 2344444456677889999999999875432 1111 1112110 0000 00000
Q ss_pred ccCCCCCcEEEEecChhHHHHHH----HHHHhcCCceeEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCccH
Q 007327 162 CKLYRPGSVGFVSKSGGMSNELY----NTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDE 237 (608)
Q Consensus 162 ~~~~~~G~valvSQSG~l~~~~~----~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~T~~I~ly~E~g~~~~ 237 (608)
.....--+|+++.+....+.... ..+.+.|+-+......-.. ..++...++-+.+. ..++|++..- ..+.
T Consensus 133 ~~~~~~~~v~ii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~---~~d~s~~i~~i~~~-~~d~v~~~~~--~~~~ 206 (347)
T cd06335 133 VKRGGFKKVALLLDNTGWGRSNRKDLTAALAARGLKPVAVEWFNWG---DKDMTAQLLRAKAA-GADAIIIVGN--GPEG 206 (347)
T ss_pred HHhcCCCeEEEEeccCchhhhHHHHHHHHHHHcCCeeEEEeeecCC---CccHHHHHHHHHhC-CCCEEEEEec--ChHH
Confidence 00112348999998886665544 4455556555443333211 34566666666543 3455555532 4556
Q ss_pred HHHHHHHHhCCCCCCEE
Q 007327 238 YSLVEALKQGKVNKPVV 254 (608)
Q Consensus 238 ~~f~~~~r~a~~~KPVv 254 (608)
..|++.+++...+.|++
T Consensus 207 ~~~~~~~~~~g~~~~~~ 223 (347)
T cd06335 207 AQIANGMAKLGWKVPII 223 (347)
T ss_pred HHHHHHHHHcCCCCcEe
Confidence 67888888865555554
No 436
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=22.81 E-value=1.3e+02 Score=34.25 Aligned_cols=99 Identities=15% Similarity=-0.053 Sum_probs=52.4
Q ss_pred CCCCCcEEEEE-cCCch-HHHHHhhCcccCCCCCCcEEEEeCCCCCCcccc-------------ccCc--------eeec
Q 007327 6 LFSKTTQALFY-NYKQL-PIQRMLDFDFLCGRETPSVAGIINPGAEGFQKL-------------FFGQ--------EEIA 62 (608)
Q Consensus 6 l~~p~s~avv~-g~~~~-~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~-------------~~g~--------ev~G 62 (608)
|.+.++|+||| |..|. +.+++.+.||. |..++ ..... ... -.|. -..-
T Consensus 2 ~~~~~kV~VIGaG~MG~gIA~~la~aG~~-------V~l~d-~~~e~-l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~ 72 (503)
T TIGR02279 2 LINVVTVAVIGAGAMGAGIAQVAASAGHQ-------VLLYD-IRAEA-LARAIAGIEARLNSLVTKGKLTAEECERTLKR 72 (503)
T ss_pred CCCccEEEEECcCHHHHHHHHHHHhCCCe-------EEEEe-CCHHH-HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhc
Confidence 56778899996 33344 88888888875 33333 21110 000 0110 0111
Q ss_pred ccccCCHHHHhhcCCCccEEEEeccChhcHH-HHHHHhcCCCCCEEEE--ecCCCCHH
Q 007327 63 IPVHSTVEAACAAHPMADVFINFSSFRSAAA-SSMAALKQPTIRVVAI--IAEGVPEA 117 (608)
Q Consensus 63 ~~~y~sv~~i~~~~p~vDlavi~vp~~~~~~-~~le~~~~~gv~~~vi--is~Gf~e~ 117 (608)
+..-.+++++ . +.|++|-+||....+. .++.++.+.--+.+|+ -||.++.+
T Consensus 73 i~~~~~~~~l-~---~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~ 126 (503)
T TIGR02279 73 LIPVTDLHAL-A---DAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSIT 126 (503)
T ss_pred cEEeCCHHHh-C---CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHH
Confidence 3345666664 3 4899999999754333 3344444322233444 36777764
No 437
>PRK05443 polyphosphate kinase; Provisional
Probab=22.72 E-value=1.9e+02 Score=34.28 Aligned_cols=80 Identities=16% Similarity=0.091 Sum_probs=56.2
Q ss_pred HHHHHHHhhcCCCccEEEEEEecCCccHHHHHHHHHhCC-CCCCEEEEEeCCCccCcccccccCCCCCcCCCCcchHHHH
Q 007327 210 LSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGK-VNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAK 288 (608)
Q Consensus 210 ~~d~l~~l~~Dp~T~~I~ly~E~g~~~~~~f~~~~r~a~-~~KPVvvlk~Grs~~g~~~~aa~sHtgalag~~~~~a~~~ 288 (608)
+.++++-.+.||++..|=+.+= -+.....+++++.+|+ ++|-|-++...+..-. ++....|
T Consensus 353 ~~~~i~~Aa~DP~V~~Ik~tlY-r~~~~s~iv~aL~~Aa~~Gk~V~vlve~karfd-----------------e~~n~~~ 414 (691)
T PRK05443 353 VVEFLRQAAADPDVLAIKQTLY-RTSKDSPIVDALIEAAENGKQVTVLVELKARFD-----------------EEANIRW 414 (691)
T ss_pred HHHHHHHhccCCCeeEEEEEEE-EecCCHHHHHHHHHHHHcCCEEEEEEccCcccc-----------------HHHHHHH
Confidence 4577888888999999855443 3444467777776655 8999999987775221 1223678
Q ss_pred HHHHHHcCCcccCCHHHHH
Q 007327 289 NQALRDAGAVVPTSYEAFE 307 (608)
Q Consensus 289 ~a~~~qaGvi~v~~~~el~ 307 (608)
-..|+++|+-++-.+..+.
T Consensus 415 ~~~L~~aGv~V~y~~~~~k 433 (691)
T PRK05443 415 ARRLEEAGVHVVYGVVGLK 433 (691)
T ss_pred HHHHHHcCCEEEEccCCcc
Confidence 8999999999876655543
No 438
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=22.62 E-value=6e+02 Score=28.78 Aligned_cols=49 Identities=18% Similarity=0.306 Sum_probs=35.9
Q ss_pred ecCCCCCCCCCHHHHHHH-hhcCCCccEEEEEEecCCccHHHHHHHHHhCCCCCCEE
Q 007327 199 AIGGDVFPGSTLSDHILR-FNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVV 254 (608)
Q Consensus 199 s~Gn~~~~dv~~~d~l~~-l~~Dp~T~~I~ly~E~g~~~~~~f~~~~r~a~~~KPVv 254 (608)
.+..+. +.++++.+.. |.+||+ |++..| ++|++.+..+++.+..+..|+
T Consensus 291 ~v~~~~--g~~f~~~lr~~LR~dPD---vI~vGE--iRd~eta~~a~~aa~tGHlvl 340 (486)
T TIGR02533 291 QVNPKI--GLTFAAGLRAILRQDPD---IIMVGE--IRDLETAQIAIQASLTGHLVL 340 (486)
T ss_pred EEcccc--CccHHHHHHHHHhcCCC---EEEEeC--CCCHHHHHHHHHHHHhCCcEE
Confidence 345566 7889888876 567999 788899 899987777777654555544
No 439
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=22.53 E-value=1.4e+02 Score=30.46 Aligned_cols=16 Identities=44% Similarity=0.619 Sum_probs=13.0
Q ss_pred CCCCEEEEEeCCCccC
Q 007327 249 VNKPVVAWVSGTCARL 264 (608)
Q Consensus 249 ~~KPVvvlk~Grs~~g 264 (608)
..||||+..-|..-.|
T Consensus 95 ~~kp~Iaav~G~a~Gg 110 (259)
T PRK06688 95 LPKPVVAAVNGPAVGV 110 (259)
T ss_pred CCCCEEEEECCeeecH
Confidence 6899999998877654
No 440
>PF07152 YaeQ: YaeQ protein; InterPro: IPR009822 This family consists of several hypothetical bacterial proteins of around 180 residues in length, which are often known as YaeQ. YaeQ is homologous to RfaH, a specialised transcription elongation protein. YaeQ is known to compensate for loss of RfaH function [].; PDB: 3C0U_B 2OT9_A 2G3W_B.
Probab=22.45 E-value=63 Score=31.50 Aligned_cols=58 Identities=16% Similarity=0.184 Sum_probs=36.6
Q ss_pred hcCCceeEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCccHHHHHHHHHhCCCCCCEEEEEeCC
Q 007327 189 RVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGT 260 (608)
Q Consensus 189 ~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~T~~I~ly~E~g~~~~~~f~~~~r~a~~~KPVvvlk~Gr 260 (608)
..++.|++-+|.+.+. | -+..|+. .-|-+.+|+|..++++..++++++ +-|++|-=|+
T Consensus 52 ~e~L~FtkGls~~deP--d--------Lw~k~~~-g~i~lWIevG~Pd~kRi~kA~~~A---~~V~vy~y~~ 109 (174)
T PF07152_consen 52 HERLEFTKGLSTDDEP--D--------LWQKDLT-GRIELWIEVGQPDEKRIKKASGRA---DQVVVYTYGR 109 (174)
T ss_dssp -TTEEE--CCC-TTS---S--------EEEE-TT-S-EEEEEEES---HHHHHHHHHHE---EEEEEEE-CH
T ss_pred CcCceecCCCCCCCCc--c--------eeeeCCC-CCEEEEEEcCCCCHHHHHHHhccC---CeEEEEEcCc
Confidence 4589999999999998 4 3455554 789999999999999999999985 3477775433
No 441
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=22.41 E-value=8.6e+02 Score=24.98 Aligned_cols=115 Identities=14% Similarity=0.154 Sum_probs=65.6
Q ss_pred cEEEEecChhHHHHHHHHHHh-cCCceeEEeec-CCCCCCCCCHHHH-------------HHHhhcCCCccEEEEEEecC
Q 007327 169 SVGFVSKSGGMSNELYNTIAR-VTDGIYEGIAI-GGDVFPGSTLSDH-------------ILRFNNIPQVKMMVVLGELG 233 (608)
Q Consensus 169 ~valvSQSG~l~~~~~~~~~~-~g~G~s~~vs~-Gn~~~~dv~~~d~-------------l~~l~~Dp~T~~I~ly~E~g 233 (608)
+|+++.-+|.||..++..+.+ .++-+..++.. ..+.. +-+..++ ++-+..+ ..+++ +
T Consensus 3 kV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~-~~~~~~~~~~~~~gv~~~~d~~~l~~~--~DvVI---d-- 74 (266)
T TIGR00036 3 KVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQ-GTDAGELAGIGKVGVPVTDDLEAVETD--PDVLI---D-- 74 (266)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccc-CCCHHHhcCcCcCCceeeCCHHHhcCC--CCEEE---E--
Confidence 478888889999998887764 46766666662 11110 1111111 1222223 34443 3
Q ss_pred CccHHHHHHHHHhCC-CCCCEEEEEeCCCccCcccccccCCCCCcCCCCcchHHHHHHHHHHcC--CcccCCHHHHHHHH
Q 007327 234 GRDEYSLVEALKQGK-VNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAG--AVVPTSYEAFESAI 310 (608)
Q Consensus 234 ~~~~~~f~~~~r~a~-~~KPVvvlk~Grs~~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaG--vi~v~~~~el~~~~ 310 (608)
+..+....+.++.+. .+||||+-|+|-++. ..+...++.++.| ++...++.==..+.
T Consensus 75 fT~p~~~~~~~~~al~~g~~vVigttg~~~e--------------------~~~~l~~aA~~~g~~v~~a~NfSlGv~ll 134 (266)
T TIGR00036 75 FTTPEGVLNHLKFALEHGVRLVVGTTGFSEE--------------------DKQELADLAEKAGIAAVIAPNFSIGVNLM 134 (266)
T ss_pred CCChHHHHHHHHHHHHCCCCEEEECCCCCHH--------------------HHHHHHHHHhcCCccEEEECcccHHHHHH
Confidence 345666666666653 789999999875542 1255666778855 66655654433333
Q ss_pred H
Q 007327 311 K 311 (608)
Q Consensus 311 ~ 311 (608)
.
T Consensus 135 ~ 135 (266)
T TIGR00036 135 F 135 (266)
T ss_pred H
Confidence 3
No 442
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=22.30 E-value=4e+02 Score=26.53 Aligned_cols=25 Identities=12% Similarity=0.089 Sum_probs=15.8
Q ss_pred CCCCcEEEEEcCCch----HHHHHhhCccc
Q 007327 7 FSKTTQALFYNYKQL----PIQRMLDFDFL 32 (608)
Q Consensus 7 ~~p~s~avv~g~~~~----~~~~l~~~~~~ 32 (608)
..++++.|+ |++|. +++.|++.||.
T Consensus 15 ~~~~~ilIt-GasG~iG~~l~~~L~~~g~~ 43 (251)
T PLN00141 15 VKTKTVFVA-GATGRTGKRIVEQLLAKGFA 43 (251)
T ss_pred ccCCeEEEE-CCCcHHHHHHHHHHHhCCCE
Confidence 345667777 44443 77888887653
No 443
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=22.28 E-value=1.7e+02 Score=27.08 Aligned_cols=44 Identities=18% Similarity=0.144 Sum_probs=29.9
Q ss_pred cHHHHHHHhcCCCCCEEEEec---------CCCCHH----HHHHHHHHHHhCCCeEE
Q 007327 91 AAASSMAALKQPTIRVVAIIA---------EGVPEA----DTKQLIAYARSNNKVVI 134 (608)
Q Consensus 91 ~~~~~le~~~~~gv~~~viis---------~Gf~e~----~~~~l~~~a~~~g~rvl 134 (608)
....+|+.|.+.|++..+|+. .|++.. -.++|.+.++++|.+++
T Consensus 37 Dl~l~L~~~k~~g~~~lfVi~PvNg~wydytG~~~~~r~~~y~kI~~~~~~~gf~v~ 93 (130)
T PF04914_consen 37 DLQLLLDVCKELGIDVLFVIQPVNGKWYDYTGLSKEMRQEYYKKIKYQLKSQGFNVA 93 (130)
T ss_dssp HHHHHHHHHHHTT-EEEEEE----HHHHHHTT--HHHHHHHHHHHHHHHHTTT--EE
T ss_pred HHHHHHHHHHHcCCceEEEecCCcHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEE
Confidence 456788999999999988886 477765 34678999999998764
No 444
>PF06230 DUF1009: Protein of unknown function (DUF1009); InterPro: IPR010415 This is a family of uncharacterised bacterial proteins.
Probab=22.21 E-value=94 Score=31.35 Aligned_cols=43 Identities=16% Similarity=0.230 Sum_probs=32.3
Q ss_pred HHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCeEEc
Q 007327 93 ASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIG 135 (608)
Q Consensus 93 ~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~rvlG 135 (608)
+..++.|.+.|.+.+.+-+.+.=-.+.+++++.|.++|+-|+|
T Consensus 172 ~~Tv~~~~~ag~~~laveAg~tl~ld~~~~i~~Ad~~gi~i~G 214 (214)
T PF06230_consen 172 PDTVENAAEAGLAGLAVEAGKTLILDREEVIALADKAGIFIVG 214 (214)
T ss_pred HHHHHHHHHcCCeEEEEecCcEEEecHHHHHHHHHHcCCEEeC
Confidence 4567777778888777755543223688999999999999987
No 445
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=22.14 E-value=1.4e+02 Score=30.38 Aligned_cols=16 Identities=44% Similarity=0.559 Sum_probs=12.8
Q ss_pred CCCCEEEEEeCCCccC
Q 007327 249 VNKPVVAWVSGTCARL 264 (608)
Q Consensus 249 ~~KPVvvlk~Grs~~g 264 (608)
..||||+..-|..-.|
T Consensus 97 ~~kpvIAav~G~a~Gg 112 (260)
T PRK07511 97 FPKPVIAAVEGAAAGA 112 (260)
T ss_pred CCCCEEEEECCeeehH
Confidence 6899999988876654
No 446
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=22.14 E-value=3.4e+02 Score=29.17 Aligned_cols=86 Identities=19% Similarity=0.187 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHhhcCCCccEEEEEEecCCcc-HHHHHHHHHhCC-CCCCEEEEEeCCCccCcccccccCCCCCcC----
Q 007327 205 FPGSTLSDHILRFNNIPQVKMMVVLGELGGRD-EYSLVEALKQGK-VNKPVVAWVSGTCARLFKSEVQFGHAGAKS---- 278 (608)
Q Consensus 205 ~~dv~~~d~l~~l~~Dp~T~~I~ly~E~g~~~-~~~f~~~~r~a~-~~KPVvvlk~Grs~~g~~~~aa~sHtgala---- 278 (608)
+++.+ .++++++.+++ .|.|++-.= |..+ +..++++++++. +++|||+. +..+.|...
T Consensus 220 ~pG~~-~~~l~~~~~~~-~~GiVl~~~-G~Gn~p~~~~~~l~~a~~~Gi~VV~~-------------Sq~~~G~v~~~~Y 283 (336)
T TIGR00519 220 YPGIS-PDIIRNYLSKG-YKGIVIEGT-GLGHAPQNKLQELQEASDRGVVVVMT-------------TQCLNGRVNMNVY 283 (336)
T ss_pred cCCCC-HHHHHHHHhCC-CCEEEEeeE-CCCCCCHHHHHHHHHHHHCCCEEEEe-------------CCCCCCccCcccc
Q ss_pred CCCcchHHHHHHHHHHcCCcccCCHHHHHHHHHHHH
Q 007327 279 GGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETF 314 (608)
Q Consensus 279 g~~~~~a~~~~a~~~qaGvi~v~~~~el~~~~~~~~ 314 (608)
+.. ..++++|+|-..++.---..+|..+
T Consensus 284 ~~g--------~~l~~~G~i~~g~lt~e~A~~kL~~ 311 (336)
T TIGR00519 284 STG--------RRLLQAGVIGGEDMLPEVALVKLMW 311 (336)
T ss_pred cch--------hhHHhCCEEECCCCCHHHHHHHHHH
No 447
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=22.11 E-value=2.8e+02 Score=29.79 Aligned_cols=75 Identities=23% Similarity=0.338 Sum_probs=44.9
Q ss_pred HHHHHHhhcCCCccEEEEEEecCCcc-H--HHHHHHHHhCC-CCCCEEEEEeCCCccCcccccccCCCCCcC-CCCcchH
Q 007327 211 SDHILRFNNIPQVKMMVVLGELGGRD-E--YSLVEALKQGK-VNKPVVAWVSGTCARLFKSEVQFGHAGAKS-GGEMESA 285 (608)
Q Consensus 211 ~d~l~~l~~Dp~T~~I~ly~E~g~~~-~--~~f~~~~r~a~-~~KPVvvlk~Grs~~g~~~~aa~sHtgala-g~~~~~a 285 (608)
.++++++.++ ..+.|++-.= |..+ + +.|.++++++. +++|||+. -|+.. |... +.+
T Consensus 223 ~~~l~~~~~~-~~~GiVl~~~-G~Gn~p~~~~~~~~l~~~~~~Gi~VV~~--Sr~~~-----------G~v~~~~Y---- 283 (335)
T PRK09461 223 AEVVRNFLRQ-PVKALILRSY-GVGNAPQNPALLQELKEASERGIVVVNL--TQCMS-----------GKVNMGGY---- 283 (335)
T ss_pred HHHHHHHHhC-CCCEEEEccC-CCCCCCCCHHHHHHHHHHHHCCCEEEEe--CCCCC-----------CcCCccch----
Confidence 5788888765 3565554322 3222 3 67999988876 77888775 23332 2221 222
Q ss_pred HHHHHHHHHcCCcccCCHHH
Q 007327 286 QAKNQALRDAGAVVPTSYEA 305 (608)
Q Consensus 286 ~~~~a~~~qaGvi~v~~~~e 305 (608)
+.- ..++++|+|-..++.-
T Consensus 284 ~~g-~~l~~~G~i~~g~lt~ 302 (335)
T PRK09461 284 ATG-NALAHAGVISGADMTV 302 (335)
T ss_pred hhh-HHHHhCCEEECCCCCH
Confidence 211 3478899999988654
No 448
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=22.05 E-value=1e+02 Score=30.61 Aligned_cols=47 Identities=15% Similarity=0.232 Sum_probs=37.6
Q ss_pred HHHHHHhcCCCCCEEEEecCCCCHH--HHHHHHHHHHhCC---------CeEEcCCcc
Q 007327 93 ASSMAALKQPTIRVVAIIAEGVPEA--DTKQLIAYARSNN---------KVVIGPATV 139 (608)
Q Consensus 93 ~~~le~~~~~gv~~~viis~Gf~e~--~~~~l~~~a~~~g---------~rvlGPNc~ 139 (608)
..++|.+.+.||+..++-.-.|+.. .+++|.+..++++ |||+||..+
T Consensus 40 A~~lerA~~~gIpt~~~~~k~~~~r~~~d~~l~~~l~~~~~dlvvLAGyMrIL~~~fl 97 (200)
T COG0299 40 AYALERAAKAGIPTVVLDRKEFPSREAFDRALVEALDEYGPDLVVLAGYMRILGPEFL 97 (200)
T ss_pred CHHHHHHHHcCCCEEEeccccCCCHHHHHHHHHHHHHhcCCCEEEEcchHHHcCHHHH
Confidence 3577888889999999988889643 6788888888876 678888754
No 449
>PLN00016 RNA-binding protein; Provisional
Probab=21.97 E-value=2.8e+02 Score=29.80 Aligned_cols=24 Identities=4% Similarity=0.041 Sum_probs=16.1
Q ss_pred CCcEEEE----Ec--CCch-HHHHHhhCccc
Q 007327 9 KTTQALF----YN--YKQL-PIQRMLDFDFL 32 (608)
Q Consensus 9 p~s~avv----~g--~~~~-~~~~l~~~~~~ 32 (608)
+++|.|+ || +-|+ +++.|++.||.
T Consensus 52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~ 82 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIGFYLAKELVKAGHE 82 (378)
T ss_pred cceEEEEeccCCCceeEhHHHHHHHHHCCCE
Confidence 4567777 64 2344 88899988764
No 450
>PRK08361 aspartate aminotransferase; Provisional
Probab=21.88 E-value=5.6e+02 Score=27.44 Aligned_cols=69 Identities=12% Similarity=0.074 Sum_probs=38.4
Q ss_pred cccCCHHHHhhcCCCccEEEEeccCh----hcHHHHHHHhcCCCCCEEEEecC----C--CCHHHHHHHHHHHHhCCCeE
Q 007327 64 PVHSTVEAACAAHPMADVFINFSSFR----SAAASSMAALKQPTIRVVAIIAE----G--VPEADTKQLIAYARSNNKVV 133 (608)
Q Consensus 64 ~~y~sv~~i~~~~p~vDlavi~vp~~----~~~~~~le~~~~~gv~~~viis~----G--f~e~~~~~l~~~a~~~g~rv 133 (608)
|+|.....+.... ..++..+.+... -.++++.+.+. .+++.+++.+. | ++.+..++|.++|+++++.+
T Consensus 125 p~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~i~-~~~~~v~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~i 202 (391)
T PRK08361 125 PAFVCYVEDAKIA-EAKPIRIPLREENEFQPDPDELLELIT-KRTRMIVINYPNNPTGATLDKEVAKAIADIAEDYNIYI 202 (391)
T ss_pred CCCcccHHHHHHc-CCEEEEEecCCccCCCCCHHHHHHhcc-cccEEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCeEE
Confidence 4555555443322 245554444322 12344444444 67877766532 3 23345788999999999876
Q ss_pred E
Q 007327 134 I 134 (608)
Q Consensus 134 l 134 (608)
+
T Consensus 203 i 203 (391)
T PRK08361 203 L 203 (391)
T ss_pred E
Confidence 5
No 451
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=21.88 E-value=5.5e+02 Score=27.88 Aligned_cols=71 Identities=17% Similarity=0.135 Sum_probs=39.5
Q ss_pred ccccCCHHHHhhcCCCccEEEEec-cChh---cHHHHHHHhcCCCCCEEEEecC----C--CCHHHHHHHHHHHHhCCCe
Q 007327 63 IPVHSTVEAACAAHPMADVFINFS-SFRS---AAASSMAALKQPTIRVVAIIAE----G--VPEADTKQLIAYARSNNKV 132 (608)
Q Consensus 63 ~~~y~sv~~i~~~~p~vDlavi~v-p~~~---~~~~~le~~~~~gv~~~viis~----G--f~e~~~~~l~~~a~~~g~r 132 (608)
-|+|+......... ..++.-+.+ +... ..++ ++++.+.+.+.+++.+- | +++...++|.++|+++++.
T Consensus 128 ~P~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~-l~~~~~~~~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ 205 (409)
T PLN00143 128 RPGFPDVETYAIFH-HLEIRHFDLLPEKGWEVDLDA-VEAIADENTIAMVIINPGNPCGSVYSYEHLNKIAETARKLGIL 205 (409)
T ss_pred CCCCcCHHHHHHHc-CCEEEEEeccCCCCCcCCHHH-HHHhcccCCEEEEEECCCCCCCCccCHHHHHHHHHHHHHcCCe
Confidence 36666665544332 144433322 1111 2334 44444456777776653 3 3444678899999999988
Q ss_pred EEc
Q 007327 133 VIG 135 (608)
Q Consensus 133 vlG 135 (608)
|+=
T Consensus 206 ii~ 208 (409)
T PLN00143 206 VIA 208 (409)
T ss_pred EEE
Confidence 773
No 452
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=21.85 E-value=1.8e+02 Score=29.73 Aligned_cols=16 Identities=38% Similarity=0.370 Sum_probs=12.8
Q ss_pred CCCCEEEEEeCCCccC
Q 007327 249 VNKPVVAWVSGTCARL 264 (608)
Q Consensus 249 ~~KPVvvlk~Grs~~g 264 (608)
..||||+..-|..-.|
T Consensus 99 ~~kPvIaav~G~a~Gg 114 (260)
T PRK05980 99 FPKPVIAAVNGLAFGG 114 (260)
T ss_pred CCCCEEEEEcCEEEhh
Confidence 6899999988776654
No 453
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=21.76 E-value=8.6e+02 Score=25.00 Aligned_cols=113 Identities=9% Similarity=0.038 Sum_probs=60.1
Q ss_pred CCCCHHHHHHHHHHHHhCCCeEEcCCcccccccCcccccccCCcccccccccCCCCCcEEEEec--C----hhHHHHHHH
Q 007327 112 EGVPEADTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSK--S----GGMSNELYN 185 (608)
Q Consensus 112 ~Gf~e~~~~~l~~~a~~~g~rvlGPNc~Gi~~~~~~~l~~~~~~~~~~~p~~~~~~G~valvSQ--S----G~l~~~~~~ 185 (608)
.+++|...+++.+.|++.|-+ ||...- .+. .-+...|+++.- + ..+...+.+
T Consensus 30 ~~vs~~tr~rV~~~a~elgY~---pn~~a~------~l~-------------~~~~~~Igvi~~~~~~~~~~~~~~gi~~ 87 (331)
T PRK14987 30 EQVSVALRGKIAAALDELGYI---PNRAPD------ILS-------------NATSRAIGVLLPSLTNQVFAEVLRGIES 87 (331)
T ss_pred CCCCHHHHHHHHHHHHHhCCC---ccHHHH------HHh-------------hCCCCEEEEEeCCCcchhHHHHHHHHHH
Confidence 357888899999999997754 664310 010 001223444432 1 233444555
Q ss_pred HHHhcCCceeEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCccHHHHHHHHHhCCCCCCEEEE
Q 007327 186 TIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAW 256 (608)
Q Consensus 186 ~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~T~~I~ly~E~g~~~~~~f~~~~r~a~~~KPVvvl 256 (608)
.+.++|+-+... .++++. + ...+.++.+. +-.+.+|++.-. ..+ .+.++.+++ .+.|||.+
T Consensus 88 ~~~~~g~~~~~~-~~~~~~--~-~~~~~~~~~~-~~~vdgiI~~~~--~~~-~~~~~~l~~--~~iPvV~~ 148 (331)
T PRK14987 88 VTDAHGYQTMLA-HYGYKP--E-MEQERLESML-SWNIDGLILTER--THT-PRTLKMIEV--AGIPVVEL 148 (331)
T ss_pred HHHHCCCEEEEe-cCCCCH--H-HHHHHHHHHH-hcCCCEEEEcCC--CCC-HHHHHHHHh--CCCCEEEE
Confidence 666666544322 333333 2 2346666654 457888887522 222 334444444 57899986
No 454
>PRK05957 aspartate aminotransferase; Provisional
Probab=21.75 E-value=3.2e+02 Score=29.40 Aligned_cols=69 Identities=19% Similarity=0.167 Sum_probs=40.1
Q ss_pred cccCCHHHHhhcCCCccEEEEeccCh--hcHHHHHHHhcCCCCCEEEEec----CCC--CHHHHHHHHHHHHhCCCeEE
Q 007327 64 PVHSTVEAACAAHPMADVFINFSSFR--SAAASSMAALKQPTIRVVAIIA----EGV--PEADTKQLIAYARSNNKVVI 134 (608)
Q Consensus 64 ~~y~sv~~i~~~~p~vDlavi~vp~~--~~~~~~le~~~~~gv~~~viis----~Gf--~e~~~~~l~~~a~~~g~rvl 134 (608)
|+|.......... .+....+.+... ..++++.+.+ ..++|.+++.+ .|. ++...++|.++|+++|+.++
T Consensus 121 P~y~~~~~~~~~~-g~~~~~v~~~~~~~~d~~~l~~~i-~~~~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li 197 (389)
T PRK05957 121 PYYFNHEMAITMA-GCQPILVPTDDNYQLQPEAIEQAI-TPKTRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHI 197 (389)
T ss_pred CCCcCHHHHHHhc-CCEEEEeecCCCCCcCHHHHHHhc-CcCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEE
Confidence 6776655443322 244443333221 1234444444 35788777654 242 45578899999999999987
No 455
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=21.68 E-value=1.6e+02 Score=31.30 Aligned_cols=106 Identities=11% Similarity=0.122 Sum_probs=0.0
Q ss_pred cccccCCHHHHhhcCCCccEEEEeccChhcHHHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHh-CCCeEEc----C
Q 007327 62 AIPVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARS-NNKVVIG----P 136 (608)
Q Consensus 62 G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~-~g~rvlG----P 136 (608)
|+++..+++++++. ..+.++++.+.+++.+.+.++|++ +|=-|.-|=...++.+.++.++ +.+-++| |
T Consensus 53 GV~~v~~~~~v~~~------~~ViirAHGv~~~~~~~~~~~g~~-viDaTCP~V~k~~~~v~~~~~~Gy~vvi~G~~~Hp 125 (298)
T PRK01045 53 GAIFVEELDEVPDG------AIVIFSAHGVSPAVREEAKERGLT-VIDATCPLVTKVHKEVARMSREGYEIILIGHKGHP 125 (298)
T ss_pred CCEEecCcccCCCC------CEEEEeCCCCCHHHHHHHHHCCCe-EEeCCCccchHHHHHHHHHHhCCCEEEEEeCCCCC
Q ss_pred CcccccccCcccccccCCcccccccccCCCCCcEEEEec
Q 007327 137 ATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSK 175 (608)
Q Consensus 137 Nc~Gi~~~~~~~l~~~~~~~~~~~p~~~~~~G~valvSQ 175 (608)
.-.|+..... +-..+..+....-........+++++||
T Consensus 126 Ev~gi~g~~~-~~~~vv~~~~e~~~l~~~~~~~v~vvsQ 163 (298)
T PRK01045 126 EVEGTMGQAP-GGVYLVESPEDVAKLEVKDPDKLALVTQ 163 (298)
T ss_pred eeeeeccCcC-CCEEEEcCHHHHhhcccCCCCcEEEEEc
No 456
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=21.68 E-value=1.6e+02 Score=32.11 Aligned_cols=40 Identities=20% Similarity=0.115 Sum_probs=27.8
Q ss_pred HHHHHHHhcCCCCCEEEEecCCCCHH-HHHHHHHHHHhCCCe
Q 007327 92 AASSMAALKQPTIRVVAIIAEGVPEA-DTKQLIAYARSNNKV 132 (608)
Q Consensus 92 ~~~~le~~~~~gv~~~viis~Gf~e~-~~~~l~~~a~~~g~r 132 (608)
...++++|.++|||. |+-++|.... ..+.+.+++++.|+.
T Consensus 60 L~~~L~~~~~~gIkv-I~NaGg~np~~~a~~v~eia~e~Gl~ 100 (362)
T PF07287_consen 60 LRPLLPAAAEKGIKV-ITNAGGLNPAGCADIVREIARELGLS 100 (362)
T ss_pred HHHHHHHHHhCCCCE-EEeCCCCCHHHHHHHHHHHHHhcCCC
Confidence 556778888888884 4456666655 667778888877654
No 457
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=21.67 E-value=1.5e+02 Score=30.26 Aligned_cols=16 Identities=38% Similarity=0.488 Sum_probs=12.8
Q ss_pred CCCCEEEEEeCCCccC
Q 007327 249 VNKPVVAWVSGTCARL 264 (608)
Q Consensus 249 ~~KPVvvlk~Grs~~g 264 (608)
..||||+..-|..-.|
T Consensus 93 ~~kPvIAav~G~a~Gg 108 (249)
T PRK07938 93 CAVPVIAAVHGFCLGG 108 (249)
T ss_pred CCCCEEEEEcCEEeeh
Confidence 6899999998877544
No 458
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=21.52 E-value=2.6e+02 Score=23.73 Aligned_cols=44 Identities=14% Similarity=0.135 Sum_probs=32.3
Q ss_pred HHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCeEEcCC
Q 007327 93 ASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPA 137 (608)
Q Consensus 93 ~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~rvlGPN 137 (608)
..+++++.. |--..|++++-.++...+.+.++|+.+++.++=..
T Consensus 14 ~~vlkaIk~-gkakLViiA~Da~~~~~k~i~~~c~~~~Vpv~~~~ 57 (82)
T PRK13601 14 KQTLKAITN-CNVLQVYIAKDAEEHVTKKIKELCEEKSIKIVYID 57 (82)
T ss_pred HHHHHHHHc-CCeeEEEEeCCCCHHHHHHHHHHHHhCCCCEEEeC
Confidence 456677764 44446677888888888999999999999875433
No 459
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=21.52 E-value=1.7e+02 Score=24.34 Aligned_cols=38 Identities=18% Similarity=0.247 Sum_probs=31.5
Q ss_pred CCEEEEecCCCCHH--HHHHHHHHHHhCCCeEEcCCcccc
Q 007327 104 IRVVAIIAEGVPEA--DTKQLIAYARSNNKVVIGPATVGG 141 (608)
Q Consensus 104 v~~~viis~Gf~e~--~~~~l~~~a~~~g~rvlGPNc~Gi 141 (608)
+|++|++.-|+.|. .-+++.+...+.|..|++.+-.|.
T Consensus 15 ~k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~D~rGh 54 (79)
T PF12146_consen 15 PKAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAYDHRGH 54 (79)
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEECCCcC
Confidence 79999999999997 456677777889999999877664
No 460
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=21.49 E-value=2.7e+02 Score=26.27 Aligned_cols=50 Identities=14% Similarity=0.110 Sum_probs=22.1
Q ss_pred ccEEEEeccChhcHHHHHHHhcCCCCCEEEEecC--CCCHHHHHHHHHHHHhCCC
Q 007327 79 ADVFINFSSFRSAAASSMAALKQPTIRVVAIIAE--GVPEADTKQLIAYARSNNK 131 (608)
Q Consensus 79 vDlavi~vp~~~~~~~~le~~~~~gv~~~viis~--Gf~e~~~~~l~~~a~~~g~ 131 (608)
.|.+||=+|+.. -+....... ....+++++. .++-....++.+.+++.++
T Consensus 93 ~d~viiDtpp~~-~~~~~~~l~--~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~ 144 (179)
T cd03110 93 AELIIIDGPPGI-GCPVIASLT--GADAALLVTEPTPSGLHDLERAVELVRHFGI 144 (179)
T ss_pred CCEEEEECcCCC-cHHHHHHHH--cCCEEEEEecCCcccHHHHHHHHHHHHHcCC
Confidence 566666666543 222333222 2333444322 2233344555555555543
No 461
>cd07373 2A5CPDO_A The alpha subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO) catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the alpha subunit, which does not contain a potential metal binding site and may not possess catalytic activity.
Probab=21.46 E-value=9.1e+02 Score=24.91 Aligned_cols=132 Identities=10% Similarity=-0.061 Sum_probs=75.4
Q ss_pred cChhHHHHHHHHHHhcCCceeEEeecCCCCCCCCCHHHHHHHh-hcCCCccEEEEEEecCCccHH---HHHHHHHhC-C-
Q 007327 175 KSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRF-NNIPQVKMMVVLGELGGRDEY---SLVEALKQG-K- 248 (608)
Q Consensus 175 QSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l-~~Dp~T~~I~ly~E~g~~~~~---~f~~~~r~a-~- 248 (608)
-+..++..+...+.++|+....+-...-.. |=..-=-|.|+ -.+.+..+|.+.+- ...+.+ +|=++++++ +
T Consensus 88 g~~eLA~~i~~~~~~~gi~~~~~~~~~~~l--DHG~~vPL~~l~~~~~~iPvV~~s~~-~~~~~~~~~~lG~al~~~l~~ 164 (271)
T cd07373 88 SDTALAEACVTACPEHGVHARGVDYDGFPI--DTGTITACTLMGIGTEALPLVVASNN-LYHSGEITEKLGAIAADAAKD 164 (271)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEecCCCCCC--cchhHHHHHHHcccCCCCCEEEEEeC-CCCCHHHHHHHHHHHHHHHHH
Confidence 456788889998888888765422211134 55555566777 44678889988876 433444 344455542 2
Q ss_pred CCCCEEEEEeCCCccCccccc-ccCCCCCcCCCCcchHHHHHHHHHHcCCcccCCHHHHHHHHHHHHH
Q 007327 249 VNKPVVAWVSGTCARLFKSEV-QFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFE 315 (608)
Q Consensus 249 ~~KPVvvlk~Grs~~g~~~~a-a~sHtgalag~~~~~a~~~~a~~~qaGvi~v~~~~el~~~~~~~~~ 315 (608)
.++-|+++-+|-..--|.... ...+ .. + ..+.+..||..+.+. +...|+++|++.......
T Consensus 165 ~~~rV~iIgSG~lSH~L~~~~~~~~~-~~--~-~~p~~~~FD~~~~~~--l~~gd~~~ll~~~~~~~~ 226 (271)
T cd07373 165 QNKRVAVVGVGGLSGSLFREEIDPRE-DH--I-ANEEDDKWNRRVLKL--IEAGDLPALREAMPVYAK 226 (271)
T ss_pred cCCeEEEEEecccccCcCcCCCcCCC-CC--c-cCccHHHHHHHHHHH--HHcCCHHHHHhcCHHHHH
Confidence 347788887775543210110 0010 00 1 112346888888665 566688888865444333
No 462
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=21.45 E-value=1.2e+02 Score=27.29 Aligned_cols=43 Identities=12% Similarity=0.051 Sum_probs=36.0
Q ss_pred HHHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCeEE
Q 007327 92 AASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVI 134 (608)
Q Consensus 92 ~~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~rvl 134 (608)
....++.+.++|+-+++|-+..|-+..-+++++.|+++++.++
T Consensus 61 ~~~~i~~L~~~~~agL~i~~~~~~~~iP~~~i~~A~~~~lPli 103 (123)
T PF07905_consen 61 LREFIRELAEKGAAGLGIKTGRYLDEIPEEIIELADELGLPLI 103 (123)
T ss_pred HHHHHHHHHHCCCeEEEEeccCccccCCHHHHHHHHHcCCCEE
Confidence 5778899999999998887775655667899999999999864
No 463
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=21.44 E-value=2.9e+02 Score=29.26 Aligned_cols=80 Identities=25% Similarity=0.300 Sum_probs=44.5
Q ss_pred HHHHHhhcCCCccEEEEEEecC-CccHHHHHHHHHhCC-CCCCEEEEEeCCCccCcccccccCCCCCcCCCCcchHHHHH
Q 007327 212 DHILRFNNIPQVKMMVVLGELG-GRDEYSLVEALKQGK-VNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKN 289 (608)
Q Consensus 212 d~l~~l~~Dp~T~~I~ly~E~g-~~~~~~f~~~~r~a~-~~KPVvvlk~Grs~~g~~~~aa~sHtgalag~~~~~a~~~~ 289 (608)
++++.+. ++ .+.|++-.= | ...++.++++++++. +++|||+.. |+..| .- ..+.- +..
T Consensus 216 ~~l~~~~-~~-~~GlVl~~~-G~Gn~~~~~~~~l~~a~~~gipVV~~s--r~~~G--~v-~~~~y----~~~-------- 275 (313)
T PF00710_consen 216 ELLDAAL-AG-AKGLVLEGY-GAGNVPPALLEALARAVERGIPVVVTS--RCPSG--GV-DYGYY----GSG-------- 275 (313)
T ss_dssp HHHHHHH-TT--SEEEEEEB-TTTBSSHHHHHHHHHHHHTTSEEEEEE--SSSCS---B-BTTSS----CTS--------
T ss_pred HHHHHHh-cc-CCEEEEecc-CCCCCCHHHHHHHHHHHhcCceEEEec--ccccC--Cc-ccccc----cch--------
Confidence 7788777 44 787776544 3 235678888888776 778887763 33333 10 01111 111
Q ss_pred HHHHHcCCcccCCHHHHHHHHH
Q 007327 290 QALRDAGAVVPTSYEAFESAIK 311 (608)
Q Consensus 290 a~~~qaGvi~v~~~~el~~~~~ 311 (608)
..+.++|++-..++.---..++
T Consensus 276 ~~l~~~Gvi~~g~lt~ekA~~k 297 (313)
T PF00710_consen 276 RDLAEAGVISGGDLTPEKARIK 297 (313)
T ss_dssp SHHHHCTEEE-TT--HHHHHHH
T ss_pred hhhhhCCEEECCCCCHHHHHHH
Confidence 3467899999888775444443
No 464
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=21.17 E-value=7.5e+02 Score=27.06 Aligned_cols=150 Identities=13% Similarity=0.126 Sum_probs=81.6
Q ss_pred cHHH-HHHHhcCCCCCEEEEecCCCCHH---HHHHHHHHHH-hCCCeEEcCCcccccccCccccc-ccCCcccccccc--
Q 007327 91 AAAS-SMAALKQPTIRVVAIIAEGVPEA---DTKQLIAYAR-SNNKVVIGPATVGGIQAGAFKIG-DTAGTIDNIIHC-- 162 (608)
Q Consensus 91 ~~~~-~le~~~~~gv~~~viis~Gf~e~---~~~~l~~~a~-~~g~rvlGPNc~Gi~~~~~~~l~-~~~~~~~~~~p~-- 162 (608)
.+.. +.+.+.+...+.++|+|+..+|. |.+.+.+.++ +.+++|+--+|-|+......+.. .+.+.+....+.
T Consensus 73 ~L~~~i~~~~~~~~P~~i~v~~tC~~~~iGdDi~~v~~~~~~~~~~~vi~v~t~gf~g~~~~G~~~a~~~l~~~l~~~~~ 152 (410)
T cd01968 73 KLYKAILEIIERYHPKAVFVYSTCVVALIGDDIDAVCKTASEKFGIPVIPVHSPGFVGNKNLGNKLACEALLDHVIGTEE 152 (410)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCchhhhccCHHHHHHHHHHhhCCCEEEEECCCcccChhHHHHHHHHHHHHHhcCCCC
Confidence 3444 44445545788999999999997 5555555444 46899999999998643221110 000111111111
Q ss_pred -cCCCCCcEEEEec---ChhHHHHHHHHHHhcCCceeEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCccHH
Q 007327 163 -KLYRPGSVGFVSK---SGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEY 238 (608)
Q Consensus 163 -~~~~~G~valvSQ---SG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~T~~I~ly~E~g~~~~~ 238 (608)
....+..|-++.. .|. ..++...+.+.|+.+...++- +.++.|+.. =++-+.-++.. -..+.
T Consensus 153 ~~~~~~~~VNiig~~~~~~d-~~el~~lL~~~Gl~v~~~~~~------~~s~eei~~----~~~A~lniv~~---~~~~~ 218 (410)
T cd01968 153 PEPLTPYDINLIGEFNVAGE-LWGVKPLLEKLGIRVLASITG------DSRVDEIRR----AHRAKLNVVQC---SKSMI 218 (410)
T ss_pred cccCCCCcEEEECCCCCccc-HHHHHHHHHHcCCeEEEEeCC------CCCHHHHHh----hhhCcEEEEEc---hhHHH
Confidence 1113688998852 233 257777888778776665432 234555543 34434333321 12334
Q ss_pred HHHHHHHhCCCCCCEEE
Q 007327 239 SLVEALKQGKVNKPVVA 255 (608)
Q Consensus 239 ~f~~~~r~a~~~KPVvv 255 (608)
.+.+.+++ +.+.|.+.
T Consensus 219 ~~a~~L~~-~fGip~~~ 234 (410)
T cd01968 219 YLARKMEE-KYGIPYIE 234 (410)
T ss_pred HHHHHHHH-HhCCCeEe
Confidence 55666654 35788764
No 465
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=21.09 E-value=7.5e+02 Score=28.12 Aligned_cols=46 Identities=9% Similarity=-0.026 Sum_probs=25.9
Q ss_pred HhcCCCCCEEEEecCCCCHHHHHHHHHHHHh---CCCeEEcCCcccccc
Q 007327 98 ALKQPTIRVVAIIAEGVPEADTKQLIAYARS---NNKVVIGPATVGGIQ 143 (608)
Q Consensus 98 ~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~---~g~rvlGPNc~Gi~~ 143 (608)
.+.+...+.++|+++..+|...+.+...+++ .+++|+..+|-|+-.
T Consensus 80 ~~~~~~P~~I~V~sTC~selIGdDi~~~~~~~~~~~~pvi~v~t~gf~g 128 (511)
T TIGR01278 80 VDDRFKPDLIVVTPSCTSSLLQEDLGNLAAAAGLDKSKVIVADVNAYRR 128 (511)
T ss_pred HHHhcCCCEEEEeCCChHHHhccCHHHHHHHhccCCCcEEEecCCCccc
Confidence 3334456667777777777643333333332 256677777777653
No 466
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=20.98 E-value=2.7e+02 Score=24.30 Aligned_cols=40 Identities=20% Similarity=0.323 Sum_probs=31.2
Q ss_pred HHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCeE
Q 007327 93 ASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVV 133 (608)
Q Consensus 93 ~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~rv 133 (608)
..+++++....++ .|++++-.++...+.+..+|+++++.+
T Consensus 22 ~~v~kai~~gkak-lViiA~D~~~~~~~~i~~~c~~~~Ip~ 61 (99)
T PRK01018 22 KRTIKAIKLGKAK-LVIVASNCPKDIKEDIEYYAKLSGIPV 61 (99)
T ss_pred HHHHHHHHcCCce-EEEEeCCCCHHHHHHHHHHHHHcCCCE
Confidence 4567777744454 666688899988899999999999985
No 467
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=20.83 E-value=5.4e+02 Score=27.60 Aligned_cols=45 Identities=11% Similarity=0.148 Sum_probs=29.3
Q ss_pred HHHHHHhcCCCCCEEEEecC----C--CCHHHHHHHHHHHHhCCCeEEcCCc
Q 007327 93 ASSMAALKQPTIRVVAIIAE----G--VPEADTKQLIAYARSNNKVVIGPAT 138 (608)
Q Consensus 93 ~~~le~~~~~gv~~~viis~----G--f~e~~~~~l~~~a~~~g~rvlGPNc 138 (608)
+++.+++. .++|.+++.+- | ++....++|.++|+++++.|+==++
T Consensus 156 ~~l~~~~~-~~~k~i~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~ 206 (393)
T TIGR03538 156 DAVPESVW-RRCQLLFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDEC 206 (393)
T ss_pred HHHHHHHh-hcceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEECcc
Confidence 44444444 57887777543 3 2334678899999999988764443
No 468
>PRK00402 3-isopropylmalate dehydratase large subunit; Reviewed
Probab=20.79 E-value=3.5e+02 Score=30.17 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=26.7
Q ss_pred EEEecCCCCHH-------HHHHHHHHHHhCCCe-EEcCCccccc
Q 007327 107 VAIIAEGVPEA-------DTKQLIAYARSNNKV-VIGPATVGGI 142 (608)
Q Consensus 107 ~viis~Gf~e~-------~~~~l~~~a~~~g~r-vlGPNc~Gi~ 142 (608)
++++..++... +++++++.|+++|++ +..|+. ||+
T Consensus 59 ~~~~~DH~~p~~~~~~a~~~~~~r~fa~~~gi~~~~~~g~-GI~ 101 (418)
T PRK00402 59 IVIVFDHFVPAKDIKSAEQQKILREFAKEQGIPNFFDVGE-GIC 101 (418)
T ss_pred EEEECCCCCCCCChhhHHHHHHHHHHHHHcCCcceeCCCC-CEe
Confidence 55556665332 678999999999998 999886 775
No 469
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=20.73 E-value=8.1e+02 Score=24.17 Aligned_cols=83 Identities=11% Similarity=0.084 Sum_probs=48.7
Q ss_pred CHHHHHHHhhcCCCccEEEE-EEec--CCccHHHHHHHHHhCCCCCCEEEEEeCCCccCcccccccCCCCCcCCCCcchH
Q 007327 209 TLSDHILRFNNIPQVKMMVV-LGEL--GGRDEYSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESA 285 (608)
Q Consensus 209 ~~~d~l~~l~~Dp~T~~I~l-y~E~--g~~~~~~f~~~~r~a~~~KPVvvlk~Grs~~g~~~~aa~sHtgalag~~~~~a 285 (608)
+..++++.+...+ ..++++ ++.+ ...+|-++++.+++....-|||++- +..+ +
T Consensus 25 ~~~~~l~~~~~~~-pd~vl~dl~d~~mp~~~Gl~~~~~l~~~~p~~~iIvlt-~~~~------------------~---- 80 (207)
T PRK11475 25 SQSSFQDAMSRIS-FSAVIFSLSAMRSERREGLSCLTELAIKFPRMRRLVIA-DDDI------------------E---- 80 (207)
T ss_pred CHHHHHHHhccCC-CCEEEeeccccCCCCCCHHHHHHHHHHHCCCCCEEEEe-CCCC------------------H----
Confidence 3457777765543 244442 2232 2346888888888765677899882 2111 1
Q ss_pred HHHHHHHHHcCC---c-ccCCHHHHHHHHHHHHH
Q 007327 286 QAKNQALRDAGA---V-VPTSYEAFESAIKETFE 315 (608)
Q Consensus 286 ~~~~a~~~qaGv---i-~v~~~~el~~~~~~~~~ 315 (608)
.....++.++|+ + --.+++||.++++....
T Consensus 81 ~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v~~ 114 (207)
T PRK11475 81 ARLIGSLSPSPLDGVLSKASTLEILQQELFLSLN 114 (207)
T ss_pred HHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHC
Confidence 234444445554 2 34678888888877664
No 470
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=20.72 E-value=1.6e+02 Score=30.09 Aligned_cols=54 Identities=22% Similarity=0.290 Sum_probs=31.5
Q ss_pred HHHHHHHhhcCCCccEEEEEEecCC--c---c---------HHHH----HHHHHhC-CCCCCEEEEEeCCCccC
Q 007327 210 LSDHILRFNNIPQVKMMVVLGELGG--R---D---------EYSL----VEALKQG-KVNKPVVAWVSGTCARL 264 (608)
Q Consensus 210 ~~d~l~~l~~Dp~T~~I~ly~E~g~--~---~---------~~~f----~~~~r~a-~~~KPVvvlk~Grs~~g 264 (608)
+.+.++.+.+||++|+|++..+ |- . | .+.+ .+..++. ...||||+..-|..-.|
T Consensus 40 l~~al~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg 112 (261)
T PRK08138 40 LAEHFTELSEDPDIRAIVLTGG-EKVFAAGADIKEFATAGAIEMYLRHTERYWEAIAQCPKPVIAAVNGYALGG 112 (261)
T ss_pred HHHHHHHHhhCCCeeEEEEECC-CCCeeCCcCHHHHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEccEEEcH
Confidence 4456666667777777777766 31 0 1 1111 1222333 36899999988877644
No 471
>PF04422 FrhB_FdhB_N: Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term; InterPro: IPR007516 Coenzyme F420 hydrogenase (1.12.99.1 from EC) reduces the low-potential two-electron acceptor coenzyme F420. This entry contains the N termini of F420 hydrogenase and dehydrogenase beta subunits [, ]. The N terminus of Methanobacterium formicicum formate dehydrogenase beta chain (1.2.1.2 from EC, P06130 from SWISSPROT) is also represented in this entry []. This region is often found in association with the 4Fe-4S binding domain, fer4 (IPR001450 from INTERPRO), and the C terminus IPR007525 from INTERPRO.
Probab=20.61 E-value=78 Score=26.67 Aligned_cols=31 Identities=19% Similarity=0.254 Sum_probs=23.3
Q ss_pred EEEEecChhHHHHHHHHHHhcCCceeEEeecC
Q 007327 170 VGFVSKSGGMSNELYNTIARVTDGIYEGIAIG 201 (608)
Q Consensus 170 valvSQSG~l~~~~~~~~~~~g~G~s~~vs~G 201 (608)
|=.-+|||++.++++.++-+.|+ +-.+|.++
T Consensus 13 ir~~~~sGG~vTaLl~~lLe~g~-Vd~vv~~~ 43 (82)
T PF04422_consen 13 IREKSQSGGVVTALLAYLLESGL-VDGVVVVG 43 (82)
T ss_pred hcccCCcHHHHHHHHHHHHHcCC-ceEEEEEe
Confidence 44568999999999999988873 44455554
No 472
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=20.54 E-value=2e+02 Score=29.32 Aligned_cols=54 Identities=19% Similarity=0.218 Sum_probs=29.6
Q ss_pred HHHHHHHhhcCCCccEEEEEEecCC--c---c---------HH----HHHHHHHhC-CCCCCEEEEEeCCCccC
Q 007327 210 LSDHILRFNNIPQVKMMVVLGELGG--R---D---------EY----SLVEALKQG-KVNKPVVAWVSGTCARL 264 (608)
Q Consensus 210 ~~d~l~~l~~Dp~T~~I~ly~E~g~--~---~---------~~----~f~~~~r~a-~~~KPVvvlk~Grs~~g 264 (608)
+.+.++.+.+|+++|+|++-.+ |- . | .+ .+.+..++. ...||||+..-|..-.|
T Consensus 34 L~~~~~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg 106 (255)
T PRK09674 34 LVNELEAAATDTSIGVCVITGN-ARFFAAGADLNEMAEKDLAATLNDPRPQLWQRLQAFNKPLIAAVNGYALGA 106 (255)
T ss_pred HHHHHHHHhhCCCcEEEEEECC-CCceecccChHhHhccchhhhHHHHHHHHHHHHHhCCCCEEEEECCEeehH
Confidence 3455555566777777776655 31 0 0 00 111222332 36899999987776543
No 473
>PRK07324 transaminase; Validated
Probab=20.37 E-value=3.9e+02 Score=28.59 Aligned_cols=73 Identities=15% Similarity=0.131 Sum_probs=42.5
Q ss_pred cccccCCHHHHhhcCCCccEEEEeccCh----hcHHHHHHHhcCCCCCEEEEecC----C--CCHHHHHHHHHHHHhCCC
Q 007327 62 AIPVHSTVEAACAAHPMADVFINFSSFR----SAAASSMAALKQPTIRVVAIIAE----G--VPEADTKQLIAYARSNNK 131 (608)
Q Consensus 62 G~~~y~sv~~i~~~~p~vDlavi~vp~~----~~~~~~le~~~~~gv~~~viis~----G--f~e~~~~~l~~~a~~~g~ 131 (608)
-.|+|.+..++.... ..++..+.+... -.++++.+.+ ..++|.+++.+. | ++....++|.++|+++|+
T Consensus 110 ~~P~y~~~~~~~~~~-g~~v~~v~~~~~~~~~~d~~~l~~~~-~~~~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~ 187 (373)
T PRK07324 110 VYPTYQQLYDIPESL-GAEVDYWQLKEENGWLPDLDELRRLV-RPNTKLICINNANNPTGALMDRAYLEEIVEIARSVDA 187 (373)
T ss_pred cCCCchhHHHHHHHc-CCEEEEEecccccCCCCCHHHHHHhC-CCCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCC
Confidence 356777777665443 255554444321 1234443433 357886655432 3 344467899999999998
Q ss_pred eEEcC
Q 007327 132 VVIGP 136 (608)
Q Consensus 132 rvlGP 136 (608)
.++==
T Consensus 188 ~ii~D 192 (373)
T PRK07324 188 YVLSD 192 (373)
T ss_pred EEEEE
Confidence 77633
No 474
>cd06572 Histidinol_dh Histidinol dehydrogenase, HisD, E.C 1.1.1.23. Histidinol dehydrogenase catalyzes the last two steps in the L-histidine biosynthesis pathway, which is conserved in bacteria, archaea, fungi, and plants. These last two steps are (i) the NAD-dependent oxidation of L-histidinol to L-histidinaldehyde, and (ii) the NAD-dependent oxidation of L-histidinaldehyde to L-histidine. In most fungi and in the unicellular choanoflagellate Monosiga bevicollis, the HisD domain is fused with units that catalyze the second and third biosynthesis steps in this same pathway.
Probab=20.35 E-value=8.7e+02 Score=26.84 Aligned_cols=73 Identities=15% Similarity=0.123 Sum_probs=44.9
Q ss_pred HHHHHHHhhcCCCccEEEEEEecCCccHHHHHHHHHhCC-CCCCEEEEEeCCCccCcccccccCCCCCcCCCCcchHHHH
Q 007327 210 LSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGK-VNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAK 288 (608)
Q Consensus 210 ~~d~l~~l~~Dp~T~~I~ly~E~g~~~~~~f~~~~r~a~-~~KPVvvlk~Grs~~g~~~~aa~sHtgalag~~~~~a~~~ 288 (608)
..|+|.-.++||+..+|++--. +++++...+.- + +-...++ .+ .+-
T Consensus 223 AaDLLaQAEH~~~a~aiLvT~s------~~la~~V~~~v~~-----------------ql~~l~r------~~----~~~ 269 (390)
T cd06572 223 AADLLSQAEHDPDSQAILVTTS------EELAEAVEEEVER-----------------QLAELPR------RE----IAA 269 (390)
T ss_pred HHHHHhhhccCCCCeEEEEECC------HHHHHHHHHHHHH-----------------HHHhCCc------HH----HHH
Confidence 4689999999999999887633 45554443311 0 1111111 01 233
Q ss_pred HHHHHHcCCcccCCHHHHHHHHHHHHH
Q 007327 289 NQALRDAGAVVPTSYEAFESAIKETFE 315 (608)
Q Consensus 289 ~a~~~qaGvi~v~~~~el~~~~~~~~~ 315 (608)
.++.++..++.++|++|.++++..+..
T Consensus 270 ~~~~~~g~ii~~~~~~eai~~~N~~AP 296 (390)
T cd06572 270 KSLLDYGAIILVDDLEEAIELANEYAP 296 (390)
T ss_pred HHHHhCCEEEEECCHHHHHHHHHhhch
Confidence 344445668889999999998876654
No 475
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=20.35 E-value=1.1e+03 Score=25.55 Aligned_cols=209 Identities=16% Similarity=0.158 Sum_probs=111.2
Q ss_pred ccCCHHHHhhcCCCccEEEEeccChhcHHHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCC--CeEEcCCccccc
Q 007327 65 VHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNN--KVVIGPATVGGI 142 (608)
Q Consensus 65 ~y~sv~~i~~~~p~vDlavi~vp~~~~~~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g--~rvlGPNc~Gi~ 142 (608)
+|..+..+.++. +-.--||+..+.-.-..+-=+|...|+|+.|++..+-|....+.+ |.+| +.+.|-|.-=-.
T Consensus 60 A~n~i~~Ls~e~-~~~~gViaaSaGNHaQGvA~aa~~lGi~a~IvMP~~tp~~Kv~a~----r~~GaeVil~g~~~dda~ 134 (347)
T COG1171 60 AYNKLSSLSEEE-ERAAGVIAASAGNHAQGVAYAAKRLGIKATIVMPETTPKIKVDAT----RGYGAEVILHGDNFDDAY 134 (347)
T ss_pred HHHHHHhcChhh-hhcCceEEecCCcHHHHHHHHHHHhCCCEEEEecCCCcHHHHHHH----HhcCCEEEEECCCHHHHH
Confidence 666666643221 134446777765445677778888999999999888776432222 3333 344444431000
Q ss_pred ccCc---ccccccCCcccccccccCCCCCcEEEEecChhHHHHHHHHHHhcCCceeEEeecCCCCCCCCCHHHHHHHhhc
Q 007327 143 QAGA---FKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNN 219 (608)
Q Consensus 143 ~~~~---~~l~~~~~~~~~~~p~~~~~~G~valvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~ 219 (608)
.... ..- +.+|- .|. -+--++.-=|+++.++++.+.+. -=.-+|++|+.-. .+-+.-|+.+
T Consensus 135 ~~a~~~a~~~---G~~~i--~pf-----D~p~viAGQGTi~lEileq~~~~--~d~v~vpvGGGGL----isGia~~~k~ 198 (347)
T COG1171 135 AAAEELAEEE---GLTFV--PPF-----DDPDVIAGQGTIALEILEQLPDL--PDAVFVPVGGGGL----ISGIATALKA 198 (347)
T ss_pred HHHHHHHHHc---CCEEe--CCC-----CCcceeecccHHHHHHHHhcccc--CCEEEEecCccHH----HHHHHHHHHH
Confidence 0000 000 01111 110 02234555688999998866543 3456778887641 2333344433
Q ss_pred -CCCccEEEEEEecCCccHHHHHHHHHhCCCCCCEEEEE-eCCCccCcccccccCCCCCcCCCCcchHHHHHHHHHHcC-
Q 007327 220 -IPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWV-SGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAG- 296 (608)
Q Consensus 220 -Dp~T~~I~ly~E~g~~~~~~f~~~~r~a~~~KPVvvlk-~Grs~~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaG- 296 (608)
.|+||+|++--| +... +.+.++ .+++++.+. .+.-..| .+..+-|. ..|+-+-+-.-
T Consensus 199 ~~p~~~vIGVEp~-~a~~---~~~Sl~---~G~~~~~~~~~~tiaDG----~av~~~g~---------~tf~i~~~~vd~ 258 (347)
T COG1171 199 LSPEIKVIGVEPE-GAPS---MYASLK---AGKIVVVLPDVGTIADG----LAVKRPGD---------LTFEILRELVDD 258 (347)
T ss_pred hCCCCeEEEEeeC-CChH---HHHHHH---cCCceeecCCCCccccc----cccCCCCH---------HHHHHHHHcCCc
Confidence 677999998877 5432 333333 476666666 7877766 44444432 34533333233
Q ss_pred CcccCCHHHHHHHHHHHHH
Q 007327 297 AVVPTSYEAFESAIKETFE 315 (608)
Q Consensus 297 vi~v~~~~el~~~~~~~~~ 315 (608)
++.| |-+|+..+.+.++.
T Consensus 259 ~v~V-~e~ei~~am~~l~~ 276 (347)
T COG1171 259 IVLV-DEDEICAAMRDLFE 276 (347)
T ss_pred EEEE-CHHHHHHHHHHHHh
Confidence 4444 44566666665555
No 476
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=20.28 E-value=1.5e+02 Score=30.17 Aligned_cols=16 Identities=38% Similarity=0.499 Sum_probs=13.1
Q ss_pred CCCCEEEEEeCCCccC
Q 007327 249 VNKPVVAWVSGTCARL 264 (608)
Q Consensus 249 ~~KPVvvlk~Grs~~g 264 (608)
..||||+..-|..-.|
T Consensus 96 ~~kPvIAav~G~a~Gg 111 (257)
T PRK06495 96 CAKPVIAAVNGPALGA 111 (257)
T ss_pred CCCCEEEEECCeeehh
Confidence 6899999998877654
No 477
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=20.24 E-value=2.1e+02 Score=29.26 Aligned_cols=16 Identities=44% Similarity=0.484 Sum_probs=12.8
Q ss_pred CCCCEEEEEeCCCccC
Q 007327 249 VNKPVVAWVSGTCARL 264 (608)
Q Consensus 249 ~~KPVvvlk~Grs~~g 264 (608)
..||||+..-|..-.|
T Consensus 93 ~~kPvIaav~G~a~Gg 108 (256)
T TIGR03210 93 VPKPVIARVQGYAIGG 108 (256)
T ss_pred CCCCEEEEECCEEehh
Confidence 6899999988876654
No 478
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=20.21 E-value=6.2e+02 Score=25.22 Aligned_cols=36 Identities=11% Similarity=0.014 Sum_probs=20.9
Q ss_pred CCCEEEEecCCCCHHHHHHHHHHHHhCCCeEEcCCccc
Q 007327 103 TIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVG 140 (608)
Q Consensus 103 gv~~~viis~Gf~e~~~~~l~~~a~~~g~rvlGPNc~G 140 (608)
+... ||.+..-. .....+-+.|+++++.++--.+.|
T Consensus 111 ~~Dv-Vi~~~d~~-~~r~~l~~~~~~~~ip~i~~g~~g 146 (228)
T cd00757 111 GYDL-VLDCTDNF-ATRYLINDACVKLGKPLVSGAVLG 146 (228)
T ss_pred CCCE-EEEcCCCH-HHHHHHHHHHHHcCCCEEEEEecc
Confidence 4443 33343322 345567888888888866555544
No 479
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=20.12 E-value=8.2e+02 Score=23.87 Aligned_cols=169 Identities=8% Similarity=0.028 Sum_probs=79.2
Q ss_pred cCCHHHHhhcCCCccEEEEeccC-hhcHHHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCeEEcCCccc----
Q 007327 66 HSTVEAACAAHPMADVFINFSSF-RSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVG---- 140 (608)
Q Consensus 66 y~sv~~i~~~~p~vDlavi~vp~-~~~~~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~rvlGPNc~G---- 140 (608)
+..+.+...+. +.++.+..... ......+++.+.+.++.++|+.+....+ .+.+.+++.++.++--|...
T Consensus 18 ~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~----~~~~~l~~~~ipvV~~~~~~~~~~ 92 (268)
T cd06298 18 ARGIDDIATMY-KYNIILSNSDNDKEKELKVLNNLLAKQVDGIIFMGGKISE----EHREEFKRSPTPVVLAGSVDEDNE 92 (268)
T ss_pred HHHHHHHHHHc-CCeEEEEeCCCCHHHHHHHHHHHHHhcCCEEEEeCCCCcH----HHHHHHhcCCCCEEEEccccCCCC
Confidence 33444544444 36766554321 1112355666666899999887654443 34445566788766554321
Q ss_pred --ccccCcccccccCCcccccccccCCCCCcEEEEecChh-H------HHHHHHHHHhcCCceeE-EeecCCCCCCCCCH
Q 007327 141 --GIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGG-M------SNELYNTIARVTDGIYE-GIAIGGDVFPGSTL 210 (608)
Q Consensus 141 --i~~~~~~~l~~~~~~~~~~~p~~~~~~G~valvSQSG~-l------~~~~~~~~~~~g~G~s~-~vs~Gn~~~~dv~~ 210 (608)
.+.++....+ -......- ....++|++++.+-. . ...+.+.+.+.|+.+.. .+-.++.. .-..
T Consensus 93 ~~~v~~d~~~~~---~~~~~~l~--~~g~~~i~~l~~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~--~~~~ 165 (268)
T cd06298 93 LPSVNIDYKKAA---FEATELLI--KNGHKKIAFISGPLEDSINGDERLAGYKEALSEANIEFDESLIFEGDYT--YESG 165 (268)
T ss_pred CCEEEECcHHHH---HHHHHHHH--HcCCceEEEEeCCcccccchhHHHHHHHHHHHHcCCCCCHHHeEeCCCC--hhHH
Confidence 1111110000 00000000 124678999964322 1 12334556666655422 12222221 1122
Q ss_pred HHHHHH-hhcCCCccEEEEEEecCCccHHHHHHHHHhCCCC
Q 007327 211 SDHILR-FNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVN 250 (608)
Q Consensus 211 ~d~l~~-l~~Dp~T~~I~ly~E~g~~~~~~f~~~~r~a~~~ 250 (608)
.+.++. +...| .++|... +-.....+++++++....
T Consensus 166 ~~~~~~~l~~~~-~~ai~~~---~d~~a~~~~~~l~~~g~~ 202 (268)
T cd06298 166 YELAEELLEDGK-PTAAFVT---DDELAIGILNAAQDAGLK 202 (268)
T ss_pred HHHHHHHhcCCC-CCEEEEc---CcHHHHHHHHHHHHcCCC
Confidence 234444 44444 6666554 334456788888875444
No 480
>cd07362 HPCD_like Class III extradiol dioxygenases with similarity to homoprotocatechuate 2,3-dioxygenase, which catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate. This subfamily of class III extradiol dioxygenases consists of two types of proteins with known enzymatic activities; 3,4-dihydroxyphenylacetate (homoprotocatechuate) 2,3-dioxygenase (HPCD) and 2-amino-5-chlorophenol 1,6-dioxygenase. HPCD catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate (hpca), a central intermediate in the bacterial degradation of aromatic compounds. The enzyme incorporates both atoms of molecular oxygen into hpca, resulting in aromatic ring-opening to yield the product alpha-hydroxy-delta-carboxymethyl cis-muconic semialdehyde. 2-amino-5-chlorophenol 1,6-dioxygenase catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. The enzyme is probably a heterotetrame
Probab=20.10 E-value=9.7e+02 Score=24.74 Aligned_cols=140 Identities=9% Similarity=-0.062 Sum_probs=81.3
Q ss_pred ChhHHHHHHHHHHhcCCceeEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEecC-CccHHHH---HHHHHhCC--C
Q 007327 176 SGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELG-GRDEYSL---VEALKQGK--V 249 (608)
Q Consensus 176 SG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~T~~I~ly~E~g-~~~~~~f---~~~~r~a~--~ 249 (608)
+-.++..+.+.+.+.|+-.+..-...-.. |=..-=-|.++..+.+..+|-+++- . ..+.++. =++++++- .
T Consensus 91 ~~~LA~~i~~~l~~~Gi~~~~~~~~~~~l--DHG~~vPL~~l~p~~~iPVV~vs~~-~~~~~~~~~~~lG~ai~~al~~~ 167 (272)
T cd07362 91 DPELGRLLVEEGQEAGLRVKAVNDPTYIW--DYGTVVPLRYLNPNKDIPVVSISAC-WTAASLEESYTWGEVIGKALLES 167 (272)
T ss_pred CHHHHHHHHHHHHHcCCceeeccCCCCCC--CcchHHHHHHhCCCCCCcEEEEecc-CCCCCHHHHHHHHHHHHHHHHhh
Confidence 34588889888888888876432222334 5555556777877788999999876 4 3455543 33333431 3
Q ss_pred CCCEEEEEeCCCccCcccccccCCCCCcCCCCcchHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHHHH-hcCC
Q 007327 250 NKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEKLV-EEGK 322 (608)
Q Consensus 250 ~KPVvvlk~Grs~~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaGvi~v~~~~el~~~~~~~~~~~~-~~G~ 322 (608)
++-|+++-+|-..-.|.. .....-| ..+-....+..||..+.+. +...|+++|++....+..+-. +||.
T Consensus 168 ~~rv~ii~SG~lsH~l~~-~~~~~~g-~~~~~~~~~~~fD~~i~~~--l~~gd~~~l~~~~~~~~~~A~~e~g~ 237 (272)
T cd07362 168 DKRVVFLASGSLSHNLVR-GPEAEEG-MNHYPSLAEQQMDRRFIQL--LREGQFQEACNMLPQYARAAGVESGG 237 (272)
T ss_pred CCCEEEEEeCcccccCCC-CCCCccc-ccCCCChhHHHHHHHHHHH--HHcCCHHHHHHhCHHHHHHhcCCccc
Confidence 688999987765432100 0110001 0000001235666666542 455689999998877777655 6654
No 481
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=20.00 E-value=3.8e+02 Score=29.67 Aligned_cols=86 Identities=19% Similarity=0.187 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHhhcCCCccEEEEEEecCCcc-HHHHHHHHHhCC-CCCCEEEEEeCCCccCcccccccCCCCCcC----
Q 007327 205 FPGSTLSDHILRFNNIPQVKMMVVLGELGGRD-EYSLVEALKQGK-VNKPVVAWVSGTCARLFKSEVQFGHAGAKS---- 278 (608)
Q Consensus 205 ~~dv~~~d~l~~l~~Dp~T~~I~ly~E~g~~~-~~~f~~~~r~a~-~~KPVvvlk~Grs~~g~~~~aa~sHtgala---- 278 (608)
+++.+ .++++++.+.. .|.|++-.= |..+ +..|+++++++. +++|||+. +..+.|...
T Consensus 284 ~pG~d-~~~l~~~~~~g-~~GiVleg~-G~G~vp~~~~~~l~~a~~~GipVV~t-------------Sqc~~G~V~~~~Y 347 (404)
T TIGR02153 284 YPGIS-PEIIEFLVDKG-YKGIVIEGT-GLGHVSEDWIPSIKRATDDGVPVVMT-------------SQCLYGRVNLNVY 347 (404)
T ss_pred CCCCC-HHHHHHHHhCC-CCEEEEeeE-CCCCCCHHHHHHHHHHHHCCCEEEEe-------------CCCCCCccCcccc
Q ss_pred CCCcchHHHHHHHHHHcCCcccCCHHHHHHHHHHHH
Q 007327 279 GGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETF 314 (608)
Q Consensus 279 g~~~~~a~~~~a~~~qaGvi~v~~~~el~~~~~~~~ 314 (608)
+.. ..+.++|+|-..++.---..+|...
T Consensus 348 ~~g--------~~l~~~GvI~~gdmtpe~A~vkLm~ 375 (404)
T TIGR02153 348 STG--------RELLKAGVIPCEDMLPEVAYVKLMW 375 (404)
T ss_pred chh--------hhHhhCCEEECCCCCHHHHHHHHHH
Done!