Query 007328
Match_columns 608
No_of_seqs 362 out of 2298
Neff 8.9
Searched_HMMs 46136
Date Thu Mar 28 22:05:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007328.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007328hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04852 Peptidases_S8_3 Peptid 100.0 9.8E-53 2.1E-57 430.8 30.9 307 105-601 1-307 (307)
2 cd07479 Peptidases_S8_SKI-1_li 100.0 4.3E-51 9.3E-56 405.7 24.6 244 136-604 1-254 (255)
3 cd07497 Peptidases_S8_14 Pepti 100.0 2.2E-50 4.8E-55 409.1 24.4 288 142-600 1-311 (311)
4 PTZ00262 subtilisin-like prote 100.0 1.6E-50 3.4E-55 429.6 24.2 273 132-605 303-595 (639)
5 cd07478 Peptidases_S8_CspA-lik 100.0 2.8E-50 6.1E-55 428.8 25.1 409 140-604 1-443 (455)
6 cd07476 Peptidases_S8_thiazoli 100.0 1.9E-48 4.2E-53 388.4 24.5 248 135-604 2-253 (267)
7 cd07483 Peptidases_S8_Subtilis 100.0 2.5E-47 5.4E-52 386.5 25.1 267 143-601 1-291 (291)
8 cd05562 Peptidases_S53_like Pe 100.0 2.8E-47 6E-52 381.0 24.1 251 139-604 1-254 (275)
9 KOG1153 Subtilisin-related pro 100.0 1E-47 2.2E-52 379.9 20.1 339 19-600 76-460 (501)
10 cd07493 Peptidases_S8_9 Peptid 100.0 1.2E-46 2.7E-51 376.9 26.1 246 144-601 1-261 (261)
11 cd07481 Peptidases_S8_Bacillop 100.0 1.3E-46 2.8E-51 377.3 25.7 247 142-601 1-264 (264)
12 cd04857 Peptidases_S8_Tripepti 100.0 3.3E-46 7.1E-51 385.1 27.5 223 219-603 182-412 (412)
13 cd07475 Peptidases_S8_C5a_Pept 100.0 7E-46 1.5E-50 387.3 28.0 285 135-602 2-318 (346)
14 cd07487 Peptidases_S8_1 Peptid 100.0 5.5E-46 1.2E-50 373.7 25.7 258 142-601 1-264 (264)
15 cd07489 Peptidases_S8_5 Peptid 100.0 1.3E-45 2.9E-50 379.1 27.8 264 133-606 3-271 (312)
16 cd05561 Peptidases_S8_4 Peptid 100.0 6.1E-46 1.3E-50 365.4 24.0 228 145-605 1-229 (239)
17 cd07485 Peptidases_S8_Fervidol 100.0 3.6E-45 7.9E-50 368.6 25.2 264 134-599 1-273 (273)
18 cd04077 Peptidases_S8_PCSK9_Pr 100.0 6.1E-45 1.3E-49 363.7 25.1 233 135-602 17-255 (255)
19 cd04847 Peptidases_S8_Subtilis 100.0 2.1E-45 4.6E-50 373.8 21.1 268 146-601 2-291 (291)
20 cd07484 Peptidases_S8_Thermita 100.0 1.6E-44 3.4E-49 361.9 26.2 241 133-603 19-259 (260)
21 cd07474 Peptidases_S8_subtilis 100.0 4.8E-44 1E-48 365.4 28.4 269 142-605 1-274 (295)
22 cd07490 Peptidases_S8_6 Peptid 100.0 3.7E-44 8.1E-49 358.1 25.4 253 144-601 1-254 (254)
23 cd07496 Peptidases_S8_13 Pepti 100.0 8.5E-44 1.8E-48 361.0 25.4 208 216-599 65-285 (285)
24 cd07494 Peptidases_S8_10 Pepti 100.0 7.4E-44 1.6E-48 360.8 24.8 251 132-605 10-287 (298)
25 cd07498 Peptidases_S8_15 Pepti 100.0 5.5E-44 1.2E-48 354.2 23.3 241 145-599 1-242 (242)
26 cd04842 Peptidases_S8_Kp43_pro 100.0 2E-43 4.3E-48 360.6 24.0 279 138-601 2-293 (293)
27 cd04843 Peptidases_S8_11 Pepti 100.0 1.7E-43 3.6E-48 354.1 22.8 250 132-601 4-277 (277)
28 cd07473 Peptidases_S8_Subtilis 100.0 1.6E-42 3.5E-47 347.4 25.7 247 143-601 2-259 (259)
29 cd07477 Peptidases_S8_Subtilis 100.0 1.8E-42 3.8E-47 340.6 24.1 227 144-599 1-229 (229)
30 cd07480 Peptidases_S8_12 Pepti 100.0 7E-42 1.5E-46 348.6 23.5 239 137-598 2-269 (297)
31 cd07491 Peptidases_S8_7 Peptid 100.0 4E-42 8.6E-47 338.7 20.4 164 142-359 2-170 (247)
32 cd07482 Peptidases_S8_Lantibio 100.0 7.4E-42 1.6E-46 349.2 23.3 255 144-599 1-294 (294)
33 cd07492 Peptidases_S8_8 Peptid 100.0 1.7E-41 3.7E-46 331.6 23.1 221 144-601 1-222 (222)
34 cd04059 Peptidases_S8_Protein_ 100.0 1.8E-41 3.9E-46 346.7 19.9 250 131-601 27-297 (297)
35 cd04848 Peptidases_S8_Autotran 100.0 4.2E-40 9E-45 331.5 22.0 245 141-601 1-267 (267)
36 PF00082 Peptidase_S8: Subtila 100.0 1.8E-39 4E-44 329.6 19.7 252 146-604 1-259 (282)
37 KOG4266 Subtilisin kexin isozy 100.0 2.5E-37 5.4E-42 314.5 17.2 348 23-606 49-448 (1033)
38 cd07488 Peptidases_S8_2 Peptid 100.0 3E-35 6.6E-40 288.6 16.5 194 217-599 32-246 (247)
39 cd00306 Peptidases_S8_S53 Pept 100.0 2.3E-32 5E-37 270.1 24.3 197 217-599 39-241 (241)
40 KOG1114 Tripeptidyl peptidase 100.0 2E-30 4.3E-35 275.4 14.6 225 222-607 310-541 (1304)
41 COG1404 AprE Subtilisin-like s 99.9 6.2E-25 1.4E-29 241.0 20.7 249 133-601 130-397 (508)
42 KOG3526 Subtilisin-like propro 99.9 5.7E-23 1.2E-27 199.3 11.3 157 131-341 149-316 (629)
43 cd04056 Peptidases_S53 Peptida 99.7 2.7E-17 5.8E-22 171.6 15.6 100 251-362 83-198 (361)
44 cd02133 PA_C5a_like PA_C5a_lik 99.1 9.9E-10 2.2E-14 99.0 12.1 117 387-521 25-142 (143)
45 cd02120 PA_subtilisin_like PA_ 99.1 3E-09 6.5E-14 93.9 13.8 123 368-495 2-125 (126)
46 PF05922 Inhibitor_I9: Peptida 98.8 1.9E-08 4.1E-13 81.5 7.1 77 25-107 1-81 (82)
47 cd02122 PA_GRAIL_like PA _GRAI 98.7 1.5E-07 3.2E-12 83.6 10.7 89 407-495 43-137 (138)
48 cd02129 PA_hSPPL_like PA_hSPPL 98.6 2E-07 4.2E-12 80.0 9.7 83 407-489 29-115 (120)
49 cd04816 PA_SaNapH_like PA_SaNa 98.6 2.1E-07 4.5E-12 81.5 10.0 88 408-495 29-121 (122)
50 cd02127 PA_hPAP21_like PA_hPAP 98.6 3.3E-07 7.1E-12 79.2 11.0 88 408-496 21-116 (118)
51 COG4934 Predicted protease [Po 98.5 5.6E-07 1.2E-11 102.3 12.7 95 251-357 288-395 (1174)
52 cd04818 PA_subtilisin_1 PA_sub 98.5 1E-06 2.2E-11 76.7 10.4 89 406-495 25-117 (118)
53 cd02126 PA_EDEM3_like PA_EDEM3 98.5 1.1E-06 2.5E-11 77.0 10.3 86 408-494 27-124 (126)
54 cd02130 PA_ScAPY_like PA_ScAPY 98.5 1.2E-06 2.5E-11 76.7 10.1 87 408-495 31-121 (122)
55 cd02125 PA_VSR PA_VSR: Proteas 98.5 1.2E-06 2.6E-11 76.7 9.9 89 407-495 21-126 (127)
56 cd02132 PA_GO-like PA_GO-like: 98.4 1.6E-06 3.6E-11 77.4 10.3 84 408-494 48-137 (139)
57 PF02225 PA: PA domain; Inter 98.4 4.7E-07 1E-11 76.4 6.4 78 409-486 20-101 (101)
58 KOG3525 Subtilisin-like propro 98.4 1.3E-06 2.7E-11 92.4 10.9 158 132-342 22-188 (431)
59 cd02124 PA_PoS1_like PA_PoS1_l 98.4 2.9E-06 6.2E-11 74.6 10.4 89 406-495 39-128 (129)
60 cd04813 PA_1 PA_1: Protease-as 98.4 2.6E-06 5.6E-11 73.5 9.5 82 406-489 25-112 (117)
61 cd00538 PA PA: Protease-associ 98.3 2.7E-06 5.9E-11 74.9 9.5 88 407-494 29-124 (126)
62 cd04817 PA_VapT_like PA_VapT_l 98.3 4.7E-06 1E-10 73.7 9.3 74 416-489 50-134 (139)
63 cd02123 PA_C_RZF_like PA_C-RZF 98.2 8.3E-06 1.8E-10 74.1 10.2 84 408-491 50-142 (153)
64 cd04819 PA_2 PA_2: Protease-as 97.9 0.00029 6.4E-09 62.0 12.8 76 416-491 38-122 (127)
65 cd04815 PA_M28_2 PA_M28_2: Pro 97.0 0.004 8.8E-08 55.2 8.5 78 417-494 34-132 (134)
66 KOG2442 Uncharacterized conser 96.0 0.03 6.5E-07 58.3 9.0 83 418-500 91-179 (541)
67 cd02128 PA_TfR PA_TfR: Proteas 94.7 0.049 1.1E-06 50.6 4.9 39 418-456 51-89 (183)
68 cd04814 PA_M28_1 PA_M28_1: Pro 94.5 0.079 1.7E-06 47.2 5.7 49 409-457 34-100 (142)
69 cd04820 PA_M28_1_1 PA_M28_1_1: 94.2 0.1 2.3E-06 46.1 5.7 49 409-457 36-96 (137)
70 cd04822 PA_M28_1_3 PA_M28_1_3: 93.7 0.16 3.4E-06 45.8 5.8 51 408-458 33-101 (151)
71 KOG3920 Uncharacterized conser 92.9 0.17 3.6E-06 44.6 4.6 91 406-497 72-172 (193)
72 cd02131 PA_hNAALADL2_like PA_h 92.7 0.18 3.9E-06 44.9 4.6 39 419-457 37-75 (153)
73 KOG4628 Predicted E3 ubiquitin 92.3 0.36 7.9E-06 49.2 6.8 82 408-489 62-150 (348)
74 cd02121 PA_GCPII_like PA_GCPII 92.1 0.27 5.9E-06 47.2 5.5 40 418-457 67-106 (220)
75 KOG1114 Tripeptidyl peptidase 82.7 0.88 1.9E-05 51.5 2.7 24 139-162 77-100 (1304)
76 cd04821 PA_M28_1_2 PA_M28_1_2: 65.3 13 0.00029 33.7 5.3 43 415-457 42-103 (157)
77 PF02402 Lysis_col: Lysis prot 55.0 4.6 0.0001 27.5 0.3 21 1-21 1-21 (46)
78 PF08139 LPAM_1: Prokaryotic m 52.3 9.4 0.0002 22.9 1.3 17 1-17 7-23 (25)
79 PRK15019 CsdA-binding activato 50.4 16 0.00035 32.7 3.1 33 561-594 77-109 (147)
80 TIGR03391 FeS_syn_CsdE cystein 50.0 15 0.00032 32.6 2.8 34 561-595 72-105 (138)
81 PF13940 Ldr_toxin: Toxin Ldr, 48.0 18 0.00039 23.1 2.1 13 568-580 14-26 (35)
82 COG2166 sufE Cysteine desulfur 47.3 19 0.00041 32.0 3.0 33 561-594 72-104 (144)
83 PRK09296 cysteine desufuration 46.4 18 0.0004 32.1 2.8 33 561-594 67-99 (138)
84 PF02845 CUE: CUE domain; Int 45.2 24 0.00053 23.9 2.7 25 577-601 5-29 (42)
85 PF03032 Brevenin: Brevenin/es 43.8 13 0.00027 26.1 1.0 20 1-20 3-22 (46)
86 PF02657 SufE: Fe-S metabolism 41.8 28 0.0006 30.4 3.2 32 562-594 59-90 (125)
87 PF07172 GRP: Glycine rich pro 37.7 19 0.00042 29.6 1.4 9 3-11 4-12 (95)
88 COG5567 Predicted small peripl 37.5 30 0.00066 25.0 2.2 25 1-25 1-25 (58)
89 smart00546 CUE Domain that may 37.5 54 0.0012 22.3 3.5 25 576-600 5-29 (43)
90 PF08260 Kinin: Insect kinin p 36.8 16 0.00035 15.5 0.4 6 513-518 3-8 (8)
91 PRK13883 conjugal transfer pro 35.2 69 0.0015 28.8 4.6 26 1-27 1-26 (151)
92 PF08194 DIM: DIM protein; In 32.6 69 0.0015 21.1 3.0 28 1-28 1-28 (36)
93 PF04255 DUF433: Protein of un 32.4 44 0.00096 24.4 2.5 39 559-597 10-54 (56)
94 PF11948 DUF3465: Protein of u 30.5 65 0.0014 28.1 3.5 16 1-16 1-16 (131)
95 PF13956 Ibs_toxin: Toxin Ibs, 28.9 36 0.00077 18.6 1.1 11 1-11 1-11 (19)
96 PF14673 DUF4459: Domain of un 28.5 18 0.00039 29.9 -0.1 19 1-19 1-19 (159)
97 PF11777 DUF3316: Protein of u 28.1 40 0.00086 28.8 1.9 15 1-15 1-15 (114)
98 PF13955 Fst_toxin: Toxin Fst, 27.3 1E+02 0.0022 17.7 2.7 18 566-583 2-19 (21)
99 PF06291 Lambda_Bor: Bor prote 27.2 44 0.00095 27.6 1.9 19 1-19 1-19 (97)
100 PF11920 DUF3438: Protein of u 27.0 57 0.0012 32.7 3.0 35 1-35 1-50 (288)
101 PRK10053 hypothetical protein; 27.0 40 0.00087 29.5 1.7 16 1-16 1-16 (130)
102 TIGR02052 MerP mercuric transp 26.8 52 0.0011 25.7 2.3 20 1-20 1-20 (92)
103 PF09403 FadA: Adhesion protei 22.9 28 0.00061 30.3 0.0 19 1-19 1-19 (126)
104 PRK09810 entericidin A; Provis 22.6 66 0.0014 21.9 1.7 10 1-10 2-11 (41)
105 TIGR00156 conserved hypothetic 21.1 58 0.0013 28.3 1.6 13 1-13 1-13 (126)
106 PRK10884 SH3 domain-containing 20.7 72 0.0016 30.5 2.3 8 28-35 34-41 (206)
107 COG0065 LeuC 3-isopropylmalate 20.3 1E+02 0.0022 32.3 3.3 59 508-580 354-413 (423)
108 PF08821 CGGC: CGGC domain; I 20.0 3.8E+02 0.0083 22.6 6.3 67 256-333 36-104 (107)
No 1
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=9.8e-53 Score=430.78 Aligned_cols=307 Identities=56% Similarity=0.918 Sum_probs=253.3
Q ss_pred cccccCCCCcccccchhhccccCccccchhhhccccCCCceEEEEeeccccCCCCCCCCCCCCCCCCCCcceeecccccC
Q 007328 105 YSLQTTRSWEFVGLDEVAKQNWNHFNMGQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFN 184 (608)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~gV~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~ 184 (608)
+++++.+++.+++++.. +. ..+|..+++|+||+|||||||||++||+|.++...+++..|.+.|..+..++
T Consensus 1 ~~~~~~~~~~~~~~~~~----~~-----~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~ 71 (307)
T cd04852 1 YQLHTTRSPDFLGLPGA----WG-----GSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFN 71 (307)
T ss_pred CCccccCCHHHcCCCCC----CC-----cccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcC
Confidence 36778888899988843 11 1256779999999999999999999999999988999999999999888887
Q ss_pred CcCCCceeeeeEecccccccccCCCCCCCCCCCCCCCCCCcccchhhhccCCCCCCCCCCCcCCccceeccCcceEEEEe
Q 007328 185 SSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYK 264 (608)
Q Consensus 185 ~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~gg~~~g~~~GvAP~A~l~~~k 264 (608)
...+++|+++.++|..++..... .........+.|..||||||||||||+...+.... +...+.+.||||+|+|+.+|
T Consensus 72 ~~~~~~ki~g~~~~~~~~~~~~~-~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~-~~~~~~~~GvAP~a~l~~~k 149 (307)
T cd04852 72 PFSCNNKLIGARYFSDGYDAYGG-FNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVG-GFAFGTASGVAPRARIAVYK 149 (307)
T ss_pred ccCcCCeEEEEEEcccchhhccC-cccccCCCCCccCCCCchhhhhhhcCCCccccccc-ccccccEEEECCCCeEEEEE
Confidence 77899999999999876554322 11233456678899999999999999865543333 44556678999999999999
Q ss_pred eecCCCccCccCCCCCCHHHHHHHHHHHHHCCCcEEEeccCCCCCCCCcccHHHHHHHHHHhCCcEEEEecCCCCCCCCC
Q 007328 265 ACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSS 344 (608)
Q Consensus 265 v~~~~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~SlG~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~ 344 (608)
+++..+ .+..++++++++||++++++|||||||.... ....+.+..++..+.++|++||+||||+|+....
T Consensus 150 v~~~~~--------~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~~-~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~ 220 (307)
T cd04852 150 VCWPDG--------GCFGSDILAAIDQAIADGVDVISYSIGGGSP-DPYEDPIAIAFLHAVEAGIFVAASAGNSGPGAST 220 (307)
T ss_pred EecCCC--------CccHHHHHHHHHHHHHcCCCEEEeCCCCCCC-CcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCc
Confidence 998855 5888999999999999999999999999632 4556778888888999999999999999987777
Q ss_pred CCCCCCceEEeeecccCcceeeeEEeCCCeEEeeeeeccCCCCcceeEEEcccCccCCcCCCCCCCCCCCCCCCCcccce
Q 007328 345 LSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGK 424 (608)
Q Consensus 345 ~~~~~~~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ 424 (608)
.++..|++++|||++
T Consensus 221 ~~~~~~~vi~Vga~~----------------------------------------------------------------- 235 (307)
T cd04852 221 VPNVAPWVTTVAAST----------------------------------------------------------------- 235 (307)
T ss_pred ccCCCCCeEEEEecc-----------------------------------------------------------------
Confidence 778889999998620
Q ss_pred EEEEecCCCchhhHHHHHHHcCceEEEEEeCCCCCCccccCCCcccEEEEeHhhHHHHHHHHhcCCCCeEEEEeCeEEec
Q 007328 425 IVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLH 504 (608)
Q Consensus 425 i~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 504 (608)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCcccccccCCCCCCCCCCCCCccccCCCcEeecccCCCCCCccccCccccceeeccchhhHHHHHHHHHHHHHHhC
Q 007328 505 TQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIH 584 (608)
Q Consensus 505 ~~~~~~~~~fSs~Gp~~~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~ 584 (608)
+||||+|||++|+++++... ..........|..++|||||||+|||++|||+|++
T Consensus 236 ----------------------~~~di~apG~~i~~~~~~~~---~~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~ 290 (307)
T cd04852 236 ----------------------LKPDIAAPGVDILAAWTPEG---ADPGDARGEDFAFISGTSMASPHVAGVAALLKSAH 290 (307)
T ss_pred ----------------------CccceeeccCceeecccCcc---ccccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHC
Confidence 56799999999999987431 11122234789999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCc
Q 007328 585 PDWSSAAIRSALMTTGN 601 (608)
Q Consensus 585 p~lt~~~ik~~L~~tA~ 601 (608)
|+++|.|||++|++||+
T Consensus 291 p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 291 PDWSPAAIKSALMTTAY 307 (307)
T ss_pred CCCCHHHHHHHHHHhcC
Confidence 99999999999999995
No 2
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=100.00 E-value=4.3e-51 Score=405.71 Aligned_cols=244 Identities=26% Similarity=0.330 Sum_probs=200.2
Q ss_pred hccccCCCceEEEEeeccccCCCCCCCCCCCCCCCCCCcceeecccccCCcCCCceeeeeEecccccccccCCCCCCCCC
Q 007328 136 LSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDD 215 (608)
Q Consensus 136 ~~~~~tG~gV~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~ 215 (608)
|..+++|+||+|||||||||.+||+|.+.. ...+|.. .
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~~----------------------------~~~~~~~--------------~ 38 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNVK----------------------------ERTNWTN--------------E 38 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhccc----------------------------cccccCC--------------C
Confidence 788999999999999999999999997320 0011111 1
Q ss_pred CCCCCCCCCcccchhhhccCCCCCCCCCCCcCCccceeccCcceEEEEeeecCCCccCccCCCCCCHHHHHHHHHHHHHC
Q 007328 216 RSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRD 295 (608)
Q Consensus 216 ~~~~d~~gHGThVAgiiag~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~~~ 295 (608)
....|..||||||||||+|.. . .+.||||+|+|+.+|++++.+ ....+.++++++|++++
T Consensus 39 ~~~~d~~gHGT~VAGiIa~~~---------~---~~~GvAp~a~l~~~~v~~~~~--------~~~~~~~~~a~~~a~~~ 98 (255)
T cd07479 39 KTLDDGLGHGTFVAGVIASSR---------E---QCLGFAPDAEIYIFRVFTNNQ--------VSYTSWFLDAFNYAILT 98 (255)
T ss_pred CCCCCCCCcHHHHHHHHHccC---------C---CceeECCCCEEEEEEeecCCC--------CchHHHHHHHHHhhhhc
Confidence 234577899999999999872 1 236999999999999998776 46778899999999999
Q ss_pred CCcEEEeccCCCCCCCCcccHHHHHHHHHHhCCcEEEEecCCCCCCCCCC--CCCCCceEEeeecccCcceeeeEEeCCC
Q 007328 296 GVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSL--SNLAPWLITVGAGSLDRDFVGPVVLGTG 373 (608)
Q Consensus 296 g~~VIn~SlG~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~--~~~~~~vitVga~~~~~~~~~~~~~~~~ 373 (608)
+++|||||||... ....++..++.++.++|++||+||||+|+...+. +...+++|+|||++.
T Consensus 99 ~~~Vin~S~G~~~---~~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~------------- 162 (255)
T cd07479 99 KIDVLNLSIGGPD---FMDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDF------------- 162 (255)
T ss_pred CCCEEEeeccCCC---CCCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeecc-------------
Confidence 9999999999852 3345666677888899999999999999765443 345678999997532
Q ss_pred eEEeeeeeccCCCCcceeEEEcccCccCCcCCCCCCCCCCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEE
Q 007328 374 MEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILG 453 (608)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~~~~~~ 453 (608)
T Consensus 163 -------------------------------------------------------------------------------- 162 (255)
T cd07479 163 -------------------------------------------------------------------------------- 162 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eCCCCCCccccCCCcccEEEEeHhhHHHHHHHHhcCCCCeEEEEeCeEEeccCCCCcccccccCCCCCC----CCCCCCC
Q 007328 454 NSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNAL----DPYILKP 529 (608)
Q Consensus 454 ~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fSs~Gp~~~----~d~~~KP 529 (608)
.+.++.|||+|++.. .++++||
T Consensus 163 ------------------------------------------------------~~~~~~~S~~g~~~~~~p~~~g~~~~ 188 (255)
T cd07479 163 ------------------------------------------------------DDNIARFSSRGMTTWELPGGYGRVKP 188 (255)
T ss_pred ------------------------------------------------------CCccccccCCCCCcccccCCCCCcCc
Confidence 257789999996531 2588999
Q ss_pred ccccCCCcEeecccCCCCCCccccCccccceeeccchhhHHHHHHHHHHHHHHhCC----CCCHHHHHHHHHhcCcCCc
Q 007328 530 DITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHP----DWSSAAIRSALMTTGNNNC 604 (608)
Q Consensus 530 DI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p----~lt~~~ik~~L~~tA~~~~ 604 (608)
||+|||.+|+++... +.|..++|||||||||||++|||+|++| .++|.+||++|++||++++
T Consensus 189 di~apG~~i~~~~~~-------------~~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~~ 254 (255)
T cd07479 189 DIVTYGSGVYGSKLK-------------GGCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRLP 254 (255)
T ss_pred cEEecCCCeeccccC-------------CCeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccCC
Confidence 999999999988765 6788999999999999999999999998 7999999999999999987
No 3
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.2e-50 Score=409.14 Aligned_cols=288 Identities=25% Similarity=0.247 Sum_probs=189.9
Q ss_pred CCceEEEEeeccccCCCCCCCCCCCCCCCCCCcceeecccccCCcCCCceeeeeEecccccccccCCCCCCCCCCCCCCC
Q 007328 142 GQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDM 221 (608)
Q Consensus 142 G~gV~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~d~ 221 (608)
|+||+|||||||||.+||||.++... .|. ..|+ ...++....++..+ ....+.|.
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~~----~~~------~~~d---~~~~~~~g~d~~~~------------~~~~~~D~ 55 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGNF----SWK------LKFD---YKAYLLPGMDKWGG------------FYVIMYDF 55 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccCC----Ccc------cccC---cCCCccCCcCCCCC------------ccCCCCCc
Confidence 89999999999999999999754210 000 0000 00011111111110 12346789
Q ss_pred CCCcccchhhhccCCCCCCCCCCCc-CCccceeccCcceEEEEeeecCCCccCccCCCCCCHHHHHH-------HHHHHH
Q 007328 222 DGHGTHTASTVAGRRVPNASAFGGF-AEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLA-------AIDDAI 293 (608)
Q Consensus 222 ~gHGThVAgiiag~~~~~~~~~gg~-~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~-------ai~~a~ 293 (608)
+||||||||||||....+.+.+ ++ ....+.||||+|+|+.+|++...+ ......+.. +++|..
T Consensus 56 ~gHGThvAGiiag~~~~~~~~~-~~~~~~g~~GVAP~A~l~~vkvl~~~~--------~~~~~~~~~g~~~~~~~~~~~~ 126 (311)
T cd07497 56 FSHGTSCASVAAGRGKMEYNLY-GYTGKFLIRGIAPDAKIAAVKALWFGD--------VIYAWLWTAGFDPVDRKLSWIY 126 (311)
T ss_pred cccchhHHHHHhccCccccccc-ccccccceeeeCCCCEEEEEEEEecCC--------cchhhhhhhccchhhhhhhhhh
Confidence 9999999999999843221111 10 123467999999999999997543 232222332 344443
Q ss_pred --HCCCcEEEeccCCCCCCC----CcccHHHHHHHHH-HhCCcEEEEecCCCCCCCCCC--CCCCCceEEeeecccCcce
Q 007328 294 --RDGVHVLSISIGTNQPFA----FNRDGIAIGALNA-VKHNILVACSAGNSGPAPSSL--SNLAPWLITVGAGSLDRDF 364 (608)
Q Consensus 294 --~~g~~VIn~SlG~~~~~~----~~~~~~~~~~~~a-~~~Gi~vV~AAGN~g~~~~~~--~~~~~~vitVga~~~~~~~ 364 (608)
+++++|||||||...... ...+..+..++.+ .++|+++|+||||+|+...+. +..++++|+|||++.....
T Consensus 127 ~~~~~~~VIN~S~G~~~~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~ 206 (311)
T cd07497 127 TGGPRVDVISNSWGISNFAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYR 206 (311)
T ss_pred ccCCCceEEEecCCcCCCCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCccc
Confidence 579999999999853211 1123344444443 489999999999999765443 3457899999997532210
Q ss_pred eeeEEeCCCeEEeeeeeccCCCCcceeEEEcccCccCCcCCCCCCCCCCCCCCCCcccceEEEEecCCCchhhHHHHHHH
Q 007328 365 VGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKR 444 (608)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~ 444 (608)
+...
T Consensus 207 ~~~~---------------------------------------------------------------------------- 210 (311)
T cd07497 207 PFYL---------------------------------------------------------------------------- 210 (311)
T ss_pred chhh----------------------------------------------------------------------------
Confidence 0000
Q ss_pred cCceEEEEEeCCCCCCccccCCCcccEEEEeHhhHHHHHHHHhcCCCCeEEEEeCeEEeccCCCCcccccccCCCCCCCC
Q 007328 445 AGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDP 524 (608)
Q Consensus 445 ~g~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fSs~Gp~~~~d 524 (608)
........+.++.||||||+. |
T Consensus 211 --------------------------------------------------------~~~~~~~~~~~~~fSs~Gp~~--~ 232 (311)
T cd07497 211 --------------------------------------------------------FGYLPGGSGDVVSWSSRGPSI--A 232 (311)
T ss_pred --------------------------------------------------------hccccCCCCCccccccCCCCc--c
Confidence 000011236789999999998 6
Q ss_pred CCCCCccccCCCcEeecccCCCCCCccccCccccceeeccchhhHHHHHHHHHHHHHHhCC------CCCHHHHHHHHHh
Q 007328 525 YILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHP------DWSSAAIRSALMT 598 (608)
Q Consensus 525 ~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p------~lt~~~ik~~L~~ 598 (608)
+++||||+|||++|+++.+...... .......|..++|||||||||||++|||+|++| .++|.+||++|++
T Consensus 233 g~~kPdv~ApG~~i~s~~~~~~~~~---~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~ 309 (311)
T cd07497 233 GDPKPDLAAIGAFAWAPGRVLDSGG---ALDGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMS 309 (311)
T ss_pred cCCCCceeccCcceEeecccCCCCc---ccCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHh
Confidence 9999999999999999876532100 011125799999999999999999999999886 6899999999999
Q ss_pred cC
Q 007328 599 TG 600 (608)
Q Consensus 599 tA 600 (608)
||
T Consensus 310 tA 311 (311)
T cd07497 310 TA 311 (311)
T ss_pred cC
Confidence 97
No 4
>PTZ00262 subtilisin-like protease; Provisional
Probab=100.00 E-value=1.6e-50 Score=429.58 Aligned_cols=273 Identities=21% Similarity=0.197 Sum_probs=197.5
Q ss_pred chhhhc--cccCCCceEEEEeeccccCCCCCCCCCCCCCCCCCCcceeecccccCCcCCCceeeeeEecccccccccCCC
Q 007328 132 GQDLLS--KARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPL 209 (608)
Q Consensus 132 ~~~~~~--~~~tG~gV~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~ 209 (608)
++++|. .+.+|+||+|||||||||++||||.++-.... ....|.. +.+-+....... +.+++|++
T Consensus 303 ~~~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~n~-~el~Grd--giDdD~nG~vdd-~~G~nfVd--------- 369 (639)
T PTZ00262 303 LDETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDVNV-KELHGRK--GIDDDNNGNVDD-EYGANFVN--------- 369 (639)
T ss_pred chHHHHHhhccCCCCcEEEEEccCCCCCChhhhhhccccc-ccccCcc--ccccccCCcccc-cccccccC---------
Confidence 346665 46789999999999999999999986521000 0000000 000000000000 11222322
Q ss_pred CCCCCCCCCCCCCCCcccchhhhccCCCCCCCCCCCcCCccceeccCcceEEEEeeecCCCccCccCCCCCCHHHHHHHH
Q 007328 210 NATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAI 289 (608)
Q Consensus 210 ~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai 289 (608)
....+.|.+||||||||||||.. .....+.||||+|+|+++|+++..+ .+..+++++||
T Consensus 370 ----~~~~P~D~~GHGTHVAGIIAA~g---------nN~~Gi~GVAP~AkLi~vKVld~~G--------~G~~sdI~~AI 428 (639)
T PTZ00262 370 ----NDGGPMDDNYHGTHVSGIISAIG---------NNNIGIVGVDKRSKLIICKALDSHK--------LGRLGDMFKCF 428 (639)
T ss_pred ----CCCCCCCCCCcchHHHHHHhccc---------cCCCceeeeecccccceEEEecCCC--------CccHHHHHHHH
Confidence 13456889999999999999983 2222346999999999999999877 58889999999
Q ss_pred HHHHHCCCcEEEeccCCCCCCCCcccHHHHHHHHHHhCCcEEEEecCCCCCCCCC--------------CCC----CCCc
Q 007328 290 DDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSS--------------LSN----LAPW 351 (608)
Q Consensus 290 ~~a~~~g~~VIn~SlG~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~--------------~~~----~~~~ 351 (608)
+||+++|++|||||||+.. ....+..++.+|.++|++||+||||+|..... +++ ..++
T Consensus 429 ~yA~~~GA~VINmSlG~~~----~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~n 504 (639)
T PTZ00262 429 DYCISREAHMINGSFSFDE----YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRN 504 (639)
T ss_pred HHHHHCCCCEEEeccccCC----ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCCC
Confidence 9999999999999999842 33567788899999999999999999854211 111 2366
Q ss_pred eEEeeecccCcceeeeEEeCCCeEEeeeeeccCCCCcceeEEEcccCccCCcCCCCCCCCCCCCCCCCcccceEEEEecC
Q 007328 352 LITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRG 431 (608)
Q Consensus 352 vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g 431 (608)
||+|||+..+..
T Consensus 505 VIaVGAv~~d~~-------------------------------------------------------------------- 516 (639)
T PTZ00262 505 VITVSNLIKDKN-------------------------------------------------------------------- 516 (639)
T ss_pred EEEEeeccCCCC--------------------------------------------------------------------
Confidence 777776432100
Q ss_pred CCchhhHHHHHHHcCceEEEEEeCCCCCCccccCCCcccEEEEeHhhHHHHHHHHhcCCCCeEEEEeCeEEeccCCCCcc
Q 007328 432 SGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFM 511 (608)
Q Consensus 432 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (608)
....+
T Consensus 517 ---------------------------------------------------------------------------~~~s~ 521 (639)
T PTZ00262 517 ---------------------------------------------------------------------------NQYSL 521 (639)
T ss_pred ---------------------------------------------------------------------------Ccccc
Confidence 00123
Q ss_pred cccccCCCCCCCCCCCCCccccCCCcEeecccCCCCCCccccCccccceeeccchhhHHHHHHHHHHHHHHhCCCCCHHH
Q 007328 512 ANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAA 591 (608)
Q Consensus 512 ~~fSs~Gp~~~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ 591 (608)
+.||++|.. ++||+|||++|+|+++. +.|..++|||||||||||++|||++++|++++.|
T Consensus 522 s~~Snyg~~-------~VDIaAPG~dI~St~p~-------------g~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~q 581 (639)
T PTZ00262 522 SPNSFYSAK-------YCQLAAPGTNIYSTFPK-------------NSYRKLNGTSMAAPHVAAIASLILSINPSLSYEE 581 (639)
T ss_pred cccccCCCC-------cceEEeCCCCeeeccCC-------------CceeecCCCchhHHHHHHHHHHHHhhCCCCCHHH
Confidence 456777632 23999999999999987 7899999999999999999999999999999999
Q ss_pred HHHHHHhcCcCCcc
Q 007328 592 IRSALMTTGNNNCC 605 (608)
Q Consensus 592 ik~~L~~tA~~~~~ 605 (608)
|+++|++||.+++-
T Consensus 582 V~~iL~~TA~~l~~ 595 (639)
T PTZ00262 582 VIRILKESIVQLPS 595 (639)
T ss_pred HHHHHHHhCccCCC
Confidence 99999999988753
No 5
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=100.00 E-value=2.8e-50 Score=428.79 Aligned_cols=409 Identities=23% Similarity=0.222 Sum_probs=240.0
Q ss_pred cCCCceEEEEeeccccCCCCCCCCC-CCCCCCCCCcceeecccccCCcCCCceeeeeEecccccccccCCCCCCCCCCCC
Q 007328 140 RYGQDVIVGLVDNGVWPESKSFSDE-GMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSP 218 (608)
Q Consensus 140 ~tG~gV~VaViDtGid~~Hp~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~ 218 (608)
++|+||+|||||||||+.||+|++. +.+++...|++....+..- ....+...+.............+.+....
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~~------~~~~~~~~~~~~~i~~~~~~~~p~~~~~~ 74 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPP------GGYYGGGEYTEEIINAALASDNPYDIVPS 74 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCCC------ccccCceEEeHHHHHHHHhcCCccccCcC
Confidence 4899999999999999999999854 6678888998766543211 11111111111000000000011233456
Q ss_pred CCCCCCcccchhhhccCCCCCCCCCCCcCCccceeccCcceEEEEeeecCCCccCc--cCCCCCCHHHHHHHHHHHHHC-
Q 007328 219 RDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASK--AAGNTCFEADMLAAIDDAIRD- 295 (608)
Q Consensus 219 ~d~~gHGThVAgiiag~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~~~~--~~~~~~~~~~i~~ai~~a~~~- 295 (608)
.|..||||||||||||+. .....+.||||+|+|+++|++...+.... .....+..++++.||+|+++.
T Consensus 75 ~D~~GHGThvAGIiag~~---------~~~~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a 145 (455)
T cd07478 75 RDENGHGTHVAGIAAGNG---------DNNPDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKA 145 (455)
T ss_pred CCCCCchHHHHHHHhcCC---------CCCCCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHHH
Confidence 789999999999999983 33344579999999999999987751000 000015688999999999874
Q ss_pred ----CCcEEEeccCCCCCCCCcccHHHHHHHHHHhC-CcEEEEecCCCCCCCCCCCCC-CCceEEeeecccCcceeeeEE
Q 007328 296 ----GVHVLSISIGTNQPFAFNRDGIAIGALNAVKH-NILVACSAGNSGPAPSSLSNL-APWLITVGAGSLDRDFVGPVV 369 (608)
Q Consensus 296 ----g~~VIn~SlG~~~~~~~~~~~~~~~~~~a~~~-Gi~vV~AAGN~g~~~~~~~~~-~~~vitVga~~~~~~~~~~~~ 369 (608)
.+.|||||||.+...+...++++++++.+..+ |++||+||||+|....+.... .+. ...-...+.
T Consensus 146 ~~~~~p~VInlSlG~~~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~~~---------~~~~~ie~~ 216 (455)
T cd07478 146 LELNKPLVINISLGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIVPN---------GETKTVELN 216 (455)
T ss_pred HHhCCCeEEEEccCcCCCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeeccC---------CceEEEEEE
Confidence 57899999999877888899999999988776 999999999999754443321 000 000011111
Q ss_pred eCCCeEEeeeeeccCCC-CcceeEEEcccCccCCcCCCC------------CCCCCCCCCCCCcccceEEEEecCCCchh
Q 007328 370 LGTGMEIIGKTVTPYNL-KKMHPLVYAADVVVPGVHQNE------------TNQCLPGSLTPEKVKGKIVLCMRGSGFKL 436 (608)
Q Consensus 370 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------------~~~c~~~~~~~~~~~g~i~~~~~g~~~~~ 436 (608)
++.+.......++.... .-...++.+............ ...|.. ...+...++.-.+.-+
T Consensus 217 v~~~~~~~~~eiW~~~~d~~~v~i~sP~Ge~~~~i~~~~~~~~~~~~~~~~t~i~v~-y~~~~~~~g~~~i~i~------ 289 (455)
T cd07478 217 VGEGEKGFNLEIWGDFPDRFSVSIISPSGESSGRINPGIGGSESYKFVFEGTTVYVY-YYLPEPYTGDQLIFIR------ 289 (455)
T ss_pred ECCCCcceEEEEecCCCCEEEEEEECCCCCccCccCcCCCcceeEEEEECCeEEEEE-EcCCCCCCCCeEEEEE------
Confidence 22221111111111111 001111111110000000000 000000 0001111111111111
Q ss_pred hHHHHHHHcCceEEEEEeCCCCCCccccCCCcccEEEEeHhhHHHHHHHHhcCCCCeEEEE----eCeEEeccC-CCCcc
Q 007328 437 SKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIK----QARTVLHTQ-PAPFM 511 (608)
Q Consensus 437 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~ 511 (608)
. .....|.+.+.++..... ......|+|...+..++..++ ......+.+.. ...++.... ..+.+
T Consensus 290 --~-~~~~~GiW~i~~~~~~~~---~g~~~~Wlp~~~~~~~~t~f~----~~~~~~tit~Pa~~~~vitVga~~~~~~~~ 359 (455)
T cd07478 290 --F-KNIKPGIWKIRLTGVSIT---DGRFDAWLPSRGLLSENTRFL----EPDPYTTLTIPGTARSVITVGAYNQNNNSI 359 (455)
T ss_pred --c-cCCCccceEEEEEeccCC---CceEEEEecCcCcCCCCCEee----cCCCCceEecCCCCCCcEEEEEEeCCCCcc
Confidence 1 123345555555554321 111234555443333332222 12222222222 112233333 34569
Q ss_pred cccccCCCCCCCCCCCCCccccCCCcEeecccCCCCCCccccCccccceeeccchhhHHHHHHHHHHHHHHhC------C
Q 007328 512 ANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIH------P 585 (608)
Q Consensus 512 ~~fSs~Gp~~~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~------p 585 (608)
+.||||||+. ++++||||+|||++|+++++. +.|..++|||||||||||++|||+|++ |
T Consensus 360 ~~~Ss~G~~~--~~~~kpdi~APG~~i~s~~~~-------------~~~~~~sGTS~Aap~vaG~aALl~~~~~~~~~~p 424 (455)
T cd07478 360 AIFSGRGPTR--DGRIKPDIAAPGVNILTASPG-------------GGYTTRSGTSVAAAIVAGACALLLQWGIVRGNDP 424 (455)
T ss_pred cCccCCCcCC--CCCcCceEEecCCCEEEeecC-------------CcEEeeCcHHHHHHHHHHHHHHHHHhchhccCCC
Confidence 9999999998 699999999999999999987 789999999999999999999999975 5
Q ss_pred CCCHHHHHHHHHhcCcCCc
Q 007328 586 DWSSAAIRSALMTTGNNNC 604 (608)
Q Consensus 586 ~lt~~~ik~~L~~tA~~~~ 604 (608)
.+++++||++|++||++++
T Consensus 425 ~~~~~~ik~~L~~tA~~~~ 443 (455)
T cd07478 425 YLYGEKIKTYLIRGARRRP 443 (455)
T ss_pred CCCHHHHHHHHHHhCccCC
Confidence 6799999999999999886
No 6
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=100.00 E-value=1.9e-48 Score=388.40 Aligned_cols=248 Identities=27% Similarity=0.303 Sum_probs=203.8
Q ss_pred hhccccCCCceEEEEeeccccCCCCCCCCCCCCCCCCCCcceeecccccCCcCCCceeeeeEecccccccccCCCCCCCC
Q 007328 135 LLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATED 214 (608)
Q Consensus 135 ~~~~~~tG~gV~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~ 214 (608)
+|..+++|+||+|||||+|||.+||+|.+....+. ..+.. .
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~~--------------------------~~~~~-------------~ 42 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTPL--------------------------FTYAA-------------A 42 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCccccc--------------------------cCccc-------------c
Confidence 68999999999999999999999999986421110 00000 1
Q ss_pred CCCCCCCCCCcccchhhhccCCCCCCCCCCCcCCccceeccCcceEEEEeeecCCCccCccCCCCCCHHHHHHHHHHHHH
Q 007328 215 DRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIR 294 (608)
Q Consensus 215 ~~~~~d~~gHGThVAgiiag~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~~ 294 (608)
.....|..+|||||||||+|... ..+.||||+|+|+.++++...+. .....++++|++|+++
T Consensus 43 ~~~~~~~~gHGT~VAgii~g~~~-----------~~~~GvAp~a~i~~~~v~~~~~~-------~~~~~~i~~ai~~a~~ 104 (267)
T cd07476 43 ACQDGGASAHGTHVASLIFGQPC-----------SSVEGIAPLCRGLNIPIFAEDRR-------GCSQLDLARAINLALE 104 (267)
T ss_pred CCCCCCCCCcHHHHHHHHhcCCC-----------CCceeECcCCeEEEEEEEeCCCC-------CCCHHHHHHHHHHHHH
Confidence 23345678999999999998731 12469999999999999876651 2346789999999999
Q ss_pred CCCcEEEeccCCCCCCCCcccHHHHHHHHHHhCCcEEEEecCCCCCCCCCCCCCCCceEEeeecccCcceeeeEEeCCCe
Q 007328 295 DGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGM 374 (608)
Q Consensus 295 ~g~~VIn~SlG~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~vitVga~~~~~~~~~~~~~~~~~ 374 (608)
++++|||||||...........+.++++++.++|++||+||||+|......+...+++|+|||++.
T Consensus 105 ~g~~VIN~S~G~~~~~~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~-------------- 170 (267)
T cd07476 105 QGAHIINISGGRLTQTGEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDD-------------- 170 (267)
T ss_pred CCCCEEEecCCcCCCCCCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecC--------------
Confidence 999999999998644444556788888999999999999999999776666777899999998532
Q ss_pred EEeeeeeccCCCCcceeEEEcccCccCCcCCCCCCCCCCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEEe
Q 007328 375 EIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGN 454 (608)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~~~~~~~ 454 (608)
T Consensus 171 -------------------------------------------------------------------------------- 170 (267)
T cd07476 171 -------------------------------------------------------------------------------- 170 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccccCCCcccEEEEeHhhHHHHHHHHhcCCCCeEEEEeCeEEeccCCCCcccccccCCCCCCCCCCCCCccccC
Q 007328 455 SPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAP 534 (608)
Q Consensus 455 ~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fSs~Gp~~~~d~~~KPDI~AP 534 (608)
.+.++.||++|+.. .||||+||
T Consensus 171 -----------------------------------------------------~~~~~~~s~~g~~~-----~~~~l~Ap 192 (267)
T cd07476 171 -----------------------------------------------------DGLPLKFSNWGADY-----RKKGILAP 192 (267)
T ss_pred -----------------------------------------------------CCCeeeecCCCCCC-----CCceEEec
Confidence 13556899999854 37899999
Q ss_pred CCcEeecccCCCCCCccccCccccceeeccchhhHHHHHHHHHHHHHHhCCC----CCHHHHHHHHHhcCcCCc
Q 007328 535 GLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPD----WSSAAIRSALMTTGNNNC 604 (608)
Q Consensus 535 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~----lt~~~ik~~L~~tA~~~~ 604 (608)
|++|+++.+. +.|..++|||||||+|||++|||+|++|. ++|++||++|++||+++.
T Consensus 193 G~~i~~~~~~-------------~~~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~ 253 (267)
T cd07476 193 GENILGAALG-------------GEVVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCD 253 (267)
T ss_pred CCCceeecCC-------------CCeEEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCC
Confidence 9999999887 78999999999999999999999999987 899999999999999985
No 7
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=100.00 E-value=2.5e-47 Score=386.49 Aligned_cols=267 Identities=25% Similarity=0.365 Sum_probs=188.6
Q ss_pred CceEEEEeeccccCCCCCCCCCCCCCCCCCCcceeec---ccccCCcCCCceeeeeEecccccccc----cCCCC-----
Q 007328 143 QDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQT---GVAFNSSLCNKKIIGARYYLKGFEQL----YGPLN----- 210 (608)
Q Consensus 143 ~gV~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~g~~~~~~~~~~~----~~~~~----- 210 (608)
++|+|||||||||++||+|++. .|....+. +.+-+.....++ +.+++|...+... ..+..
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~-------~~~n~~e~~~~~~d~d~ng~~dd-~~g~~f~~~~~~~~~~~~~~~~~~~~~ 72 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGK-------LWINKKEIPGNGIDDDNNGYIDD-VNGWNFLGQYDPRRIVGDDPYDLTEKG 72 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhh-------hhcCCcccCCCCccCCCCCcccc-ccCeeccCCcccccccccCcccccccc
Confidence 5899999999999999999865 23221110 111110011111 1223333211100 00000
Q ss_pred -CCCCCCCCCCCCCCcccchhhhccCCCCCCCCCCCcCCccceeccCcceEEEEeeecCCCccCccCCCCCCHHHHHHHH
Q 007328 211 -ATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAI 289 (608)
Q Consensus 211 -~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai 289 (608)
...+...+.+..+|||||||||+|...+ ..+ +.||||+|+|+.+|++... .....++++||
T Consensus 73 ~g~~~~~~~~~~~gHGT~VAGiIaa~~~n--------~~g-~~GvAp~a~i~~~k~~~~g---------~~~~~~i~~Ai 134 (291)
T cd07483 73 YGNNDVNGPISDADHGTHVAGIIAAVRDN--------GIG-IDGVADNVKIMPLRIVPNG---------DERDKDIANAI 134 (291)
T ss_pred ccccccCCCCCCCCcHHHHHHHHhCcCCC--------CCc-eEEECCCCEEEEEEEecCC---------CcCHHHHHHHH
Confidence 0112334557899999999999998321 122 5799999999999998643 36678899999
Q ss_pred HHHHHCCCcEEEeccCCCCCCCCcccHHHHHHHHHHhCCcEEEEecCCCCCCCCC---CC--------CCCCceEEeeec
Q 007328 290 DDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSS---LS--------NLAPWLITVGAG 358 (608)
Q Consensus 290 ~~a~~~g~~VIn~SlG~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~---~~--------~~~~~vitVga~ 358 (608)
+|++++|++|||||||... ......+..+++++.++|++||+||||+|..... ++ ...+++|+|||+
T Consensus 135 ~~a~~~g~~IiN~S~G~~~--~~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~ 212 (291)
T cd07483 135 RYAVDNGAKVINMSFGKSF--SPNKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGAS 212 (291)
T ss_pred HHHHHCCCcEEEeCCCCCC--CCccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeec
Confidence 9999999999999999742 2233456777888999999999999999854211 11 123567777764
Q ss_pred ccCcceeeeEEeCCCeEEeeeeeccCCCCcceeEEEcccCccCCcCCCCCCCCCCCCCCCCcccceEEEEecCCCchhhH
Q 007328 359 SLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSK 438 (608)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~ 438 (608)
....
T Consensus 213 ~~~~---------------------------------------------------------------------------- 216 (291)
T cd07483 213 SKKY---------------------------------------------------------------------------- 216 (291)
T ss_pred cccC----------------------------------------------------------------------------
Confidence 3211
Q ss_pred HHHHHHcCceEEEEEeCCCCCCccccCCCcccEEEEeHhhHHHHHHHHhcCCCCeEEEEeCeEEeccCCCCcccccccCC
Q 007328 439 GMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRG 518 (608)
Q Consensus 439 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fSs~G 518 (608)
....++.||++|
T Consensus 217 --------------------------------------------------------------------~~~~~~~~Sn~G 228 (291)
T cd07483 217 --------------------------------------------------------------------ENNLVANFSNYG 228 (291)
T ss_pred --------------------------------------------------------------------CcccccccCCCC
Confidence 012467899999
Q ss_pred CCCCCCCCCCCccccCCCcEeecccCCCCCCccccCccccceeeccchhhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHh
Q 007328 519 PNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMT 598 (608)
Q Consensus 519 p~~~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~ 598 (608)
+.. |||+|||+.|+++.+. +.|..++|||||||+|||++|||+|++|+|++.|||++|++
T Consensus 229 ~~~-------vdi~APG~~i~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ 288 (291)
T cd07483 229 KKN-------VDVFAPGERIYSTTPD-------------NEYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILE 288 (291)
T ss_pred CCc-------eEEEeCCCCeEeccCc-------------CCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 843 3999999999999876 78999999999999999999999999999999999999999
Q ss_pred cCc
Q 007328 599 TGN 601 (608)
Q Consensus 599 tA~ 601 (608)
||+
T Consensus 289 ta~ 291 (291)
T cd07483 289 SGV 291 (291)
T ss_pred hCC
Confidence 985
No 8
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=100.00 E-value=2.8e-47 Score=380.96 Aligned_cols=251 Identities=26% Similarity=0.220 Sum_probs=188.1
Q ss_pred ccCCCceEEEEeeccccCCCCCCCCCCCCCCCCCCcceeecccccCCcCCCceeeeeEecccccccccCCCCCCCCCCCC
Q 007328 139 ARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSP 218 (608)
Q Consensus 139 ~~tG~gV~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~ 218 (608)
|+||+||+|||||||||..||++.+...+.++.. ..+... ....
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~~l~~~-----------------------~~~~~~-------------~~~~ 44 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASGDLPGN-----------------------VNVLGD-------------LDGG 44 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCCCCCcc-----------------------eeeccc-------------cCCC
Confidence 5799999999999999999986543211111111 111110 1235
Q ss_pred CCCCCCcccchhhhccCCCCCCCCCCCcCCccceeccCcceEEEEeeecCCCccCccCCCCCCHHHHHHHHHHHHHCCCc
Q 007328 219 RDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVH 298 (608)
Q Consensus 219 ~d~~gHGThVAgiiag~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~ 298 (608)
.|..+|||||||||+ ||||+|+|+.+|+. ...+++++||+|++++|++
T Consensus 45 ~d~~gHGT~vAgii~-------------------GvAP~a~l~~~~~~-------------~~~~~i~~ai~~a~~~g~~ 92 (275)
T cd05562 45 SGGGDEGRAMLEIIH-------------------DIAPGAELAFHTAG-------------GGELDFAAAIRALAAAGAD 92 (275)
T ss_pred CCCCchHHHHHHHHh-------------------ccCCCCEEEEEecC-------------CCHHHHHHHHHHHHHcCCC
Confidence 678899999999993 89999999998862 4478899999999999999
Q ss_pred EEEeccCCCCCCCCcccHHHHHHHHHHhC-CcEEEEecCCCCCCCC-CCCCCCCceEEeeecccCcceeeeEEeCCCeEE
Q 007328 299 VLSISIGTNQPFAFNRDGIAIGALNAVKH-NILVACSAGNSGPAPS-SLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEI 376 (608)
Q Consensus 299 VIn~SlG~~~~~~~~~~~~~~~~~~a~~~-Gi~vV~AAGN~g~~~~-~~~~~~~~vitVga~~~~~~~~~~~~~~~~~~~ 376 (608)
|||||||......+.+..+..+++++.++ |++||+||||+|.... ..++..+++|+|||++...........+
T Consensus 93 Vin~S~g~~~~~~~~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s~~~----- 167 (275)
T cd05562 93 IIVDDIGYLNEPFFQDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGSDPA----- 167 (275)
T ss_pred EEEecccccCCCcccCCHHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCcccccccc-----
Confidence 99999998533333445678888888887 9999999999997543 3345689999999976432110000000
Q ss_pred eeeeeccCCCCcceeEEEcccCccCCcCCCCCCCCCCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEEeCC
Q 007328 377 IGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSP 456 (608)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~ 456 (608)
T Consensus 168 -------------------------------------------------------------------------------- 167 (275)
T cd05562 168 -------------------------------------------------------------------------------- 167 (275)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccCCCcccEEEEeHhhHHHHHHHHhcCCCCeEEEEeCeEEeccCCCCcccccccCCCCCCCCCCCCCccccCCC
Q 007328 457 ANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGL 536 (608)
Q Consensus 457 ~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fSs~Gp~~~~d~~~KPDI~APG~ 536 (608)
........+.|+++||+. ++++||||+|||+
T Consensus 168 -----------------------------------------------~~~~~s~~~~~~~~~p~~--~~~~~~di~Apgg 198 (275)
T cd05562 168 -----------------------------------------------PGGTPSSFDPVGIRLPTP--EVRQKPDVTAPDG 198 (275)
T ss_pred -----------------------------------------------cCCCcccccCCcccCcCC--CCCcCCeEEcCCc
Confidence 000012345678899987 5899999999975
Q ss_pred -cEeecccCCCCCCccccCccccceeeccchhhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCc
Q 007328 537 -NILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTGNNNC 604 (608)
Q Consensus 537 -~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~tA~~~~ 604 (608)
++.+++.. +.|..++|||||||||||++|||+|++|++++.|||++|++||+++.
T Consensus 199 ~~~~~~~~~-------------~~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~ 254 (275)
T cd05562 199 VNGTVDGDG-------------DGPPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMG 254 (275)
T ss_pred ccccCCCcC-------------CceeecccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccC
Confidence 44555444 78999999999999999999999999999999999999999999874
No 9
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-47 Score=379.92 Aligned_cols=339 Identities=22% Similarity=0.312 Sum_probs=263.0
Q ss_pred cccCCceEEEEeCCCCCCCccchhhhHhHHHHHHHhhcChhhhhc------------------ceEEEec---ceeeeEE
Q 007328 19 AQKQKQVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARA------------------SHLYSYK---HSINGFS 77 (608)
Q Consensus 19 ~~~~~~~yiV~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~------------------~~~~~~~---~~~~~~~ 77 (608)
....+.+|||.|++... +.....|.++++........... .+.+.|. ..++++.
T Consensus 76 ~~~~~~~YiV~f~~~~~-----q~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~y~ 150 (501)
T KOG1153|consen 76 EEALPSRYIVVFKPDAS-----QQKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRGYT 150 (501)
T ss_pred hcccccceEEEeCCCcc-----HHHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhccc
Confidence 34567899999997776 66667777777766542221000 1222333 2678888
Q ss_pred EEcCHHHHHHhhCCCCeEEEEeCCCCcccccc-----CCCCcccccchhhccccC-ccccchhhhccccCCCceEEEEee
Q 007328 78 AVLTPDEAARLSELEEVVSVYPSHPEKYSLQT-----TRSWEFVGLDEVAKQNWN-HFNMGQDLLSKARYGQDVIVGLVD 151 (608)
Q Consensus 78 ~~~~~~~~~~l~~~p~V~~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~tG~gV~VaViD 151 (608)
-.++.+.+..++++|-+..++++. .+.... .+....|++.+++..... +......+++ -..|+||..+|+|
T Consensus 151 ~~ft~~~v~~i~~~p~~~~ve~~~--~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~-~~aG~gvtaYv~D 227 (501)
T KOG1153|consen 151 GYFTGESVCSIRSDPLIKAVEKDS--VVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYE-IDAGKGVTAYVLD 227 (501)
T ss_pred cccccceeeeeccCcceeeccccc--ccccccccceecccCCchhhhhhcccccccccchheEEee-cccCCCeEEEEec
Confidence 889999999999999999999998 665443 334455677776555532 1111122222 3489999999999
Q ss_pred ccccCCCCCCCCCCCCCCCCCCcceeecccccCCcCCCceeeeeEecccccccccCCCCCCCCCCCCCCCCCCcccchhh
Q 007328 152 NGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTAST 231 (608)
Q Consensus 152 tGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAgi 231 (608)
|||+..||||.++ ++| |..+ . +.....|++||||||||+
T Consensus 228 TGVni~H~dFegR------a~w------Ga~i--------------~---------------~~~~~~D~nGHGTH~AG~ 266 (501)
T KOG1153|consen 228 TGVNIEHPDFEGR------AIW------GATI--------------P---------------PKDGDEDCNGHGTHVAGL 266 (501)
T ss_pred ccccccccccccc------eec------cccc--------------C---------------CCCcccccCCCcceeeee
Confidence 9999999999876 233 1111 0 123456899999999999
Q ss_pred hccCCCCCCCCCCCcCCccceeccCcceEEEEeeecCCCccCccCCCCCCHHHHHHHHHHHHHC---------CCcEEEe
Q 007328 232 VAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRD---------GVHVLSI 302 (608)
Q Consensus 232 iag~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~~~---------g~~VIn~ 302 (608)
|+++ . -|||.+++|+++||++++| ++..+++++++||+++. +..|.||
T Consensus 267 I~sK---------t------~GvAK~s~lvaVKVl~~dG--------sGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~Nl 323 (501)
T KOG1153|consen 267 IGSK---------T------FGVAKNSNLVAVKVLRSDG--------SGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANL 323 (501)
T ss_pred eecc---------c------cccccccceEEEEEeccCC--------cEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEE
Confidence 9998 2 2999999999999999999 89999999999999986 5689999
Q ss_pred ccCCCCCCCCcccHHHHHHHHHHhCCcEEEEecCCCCCCCCCC-CCCCCceEEeeecccCcceeeeEEeCCCeEEeeeee
Q 007328 303 SIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSL-SNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTV 381 (608)
Q Consensus 303 SlG~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~-~~~~~~vitVga~~~~~~~~~~~~~~~~~~~~~~~~ 381 (608)
|+|+. ..-+++.|+++|.+.|+.+++||||+..+.|.. ++.++.+|+|||++..
T Consensus 324 SlGg~-----~S~aLn~AV~~A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~~-------------------- 378 (501)
T KOG1153|consen 324 SLGGF-----RSAALNMAVNAASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTKN-------------------- 378 (501)
T ss_pred ecCCc-----ccHHHHHHHHHHhhcCeEEEEcCCCcchhhhccCcccccccEEecccccc--------------------
Confidence 99995 345678888999999999999999999877654 4578999999997532
Q ss_pred ccCCCCcceeEEEcccCccCCcCCCCCCCCCCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCCCCCc
Q 007328 382 TPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNE 461 (608)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 461 (608)
T Consensus 379 -------------------------------------------------------------------------------- 378 (501)
T KOG1153|consen 379 -------------------------------------------------------------------------------- 378 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCcccEEEEeHhhHHHHHHHHhcCCCCeEEEEeCeEEeccCCCCcccccccCCCCCCCCCCCCCccccCCCcEeec
Q 007328 462 YSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAA 541 (608)
Q Consensus 462 ~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fSs~Gp~~~~d~~~KPDI~APG~~I~sa 541 (608)
+.++.|||||+|+ ||.|||.+|+|+
T Consensus 379 -----------------------------------------------D~iA~FSN~G~CV--------diFAPGv~IlSs 403 (501)
T KOG1153|consen 379 -----------------------------------------------DTIAFFSNWGKCV--------DIFAPGVNILSS 403 (501)
T ss_pred -----------------------------------------------cchhhhcCcccee--------eeecCchhhhhh
Confidence 6889999999999 999999999999
Q ss_pred ccCCCCCCccccCccccceeeccchhhHHHHHHHHHHHHHHhCCC---------CCHHHHHHHHHhcC
Q 007328 542 WSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPD---------WSSAAIRSALMTTG 600 (608)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~---------lt~~~ik~~L~~tA 600 (608)
|.++. ......||||||+|||||++|.++.++|. .+|.++|..++.-.
T Consensus 404 ~iGs~-----------~at~ilSGTSMasPhvaG~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~ 460 (501)
T KOG1153|consen 404 WIGSN-----------NATAILSGTSMASPHVAGLAAYFLSLGPLPDSSFANDAGSPSELKKRLLKFK 460 (501)
T ss_pred hhcCc-----------cchheeecccccCcchhhhHHHhhhcCCCChHHhhhccCChHHhhhhhhccc
Confidence 99843 56778999999999999999999999883 38999988876543
No 10
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.2e-46 Score=376.94 Aligned_cols=246 Identities=28% Similarity=0.359 Sum_probs=196.2
Q ss_pred ceEEEEeeccccCCCCCCCCCCCCCCCCCCcceeecccccCCcCCCceeeeeEecccccccccCCCCCCCCCCC-CCCCC
Q 007328 144 DVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRS-PRDMD 222 (608)
Q Consensus 144 gV~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~-~~d~~ 222 (608)
||+||||||||+.+||+|..... ..+.++.+.++|..+ ... ..|..
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~~--------------------~~~~~i~~~~~~~~~-------------~~~~~~~~~ 47 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKHL--------------------FKNLRILGEYDFVDN-------------SNNTNYTDD 47 (261)
T ss_pred CCEEEEEccCCCccCcchhhhcc--------------------ccCCceeeeecCccC-------------CCCCCCCCC
Confidence 79999999999999999942210 123456666666543 122 36788
Q ss_pred CCcccchhhhccCCCCCCCCCCCcCCccceeccCcceEEEEeeecCCCccCccCCCCCCHHHHHHHHHHHHHCCCcEEEe
Q 007328 223 GHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSI 302 (608)
Q Consensus 223 gHGThVAgiiag~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~ 302 (608)
+|||||||||+|.. .+.+.||||+|+|+.+|+.+...+. ......++.+++|+.+++++||||
T Consensus 48 ~HGT~vagiia~~~-----------~~~~~GvAp~a~l~~~~~~~~~~~~------~~~~~~~~~ai~~a~~~~v~VIn~ 110 (261)
T cd07493 48 DHGTAVLSTMAGYT-----------PGVMVGTAPNASYYLARTEDVASET------PVEEDNWVAAAEWADSLGVDIISS 110 (261)
T ss_pred CchhhhheeeeeCC-----------CCCEEEeCCCCEEEEEEecccCCcc------cccHHHHHHHHHHHHHcCCCEEEe
Confidence 99999999999872 1235799999999999987643311 245567899999999999999999
Q ss_pred ccCCCCCCCC-----------cccHHHHHHHHHHhCCcEEEEecCCCCCCC---CCCCCCCCceEEeeecccCcceeeeE
Q 007328 303 SIGTNQPFAF-----------NRDGIAIGALNAVKHNILVACSAGNSGPAP---SSLSNLAPWLITVGAGSLDRDFVGPV 368 (608)
Q Consensus 303 SlG~~~~~~~-----------~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~---~~~~~~~~~vitVga~~~~~~~~~~~ 368 (608)
|||....... ....+.++++.+.++|++||+||||+|... ...+...+++|+|||.+.
T Consensus 111 S~G~~~~~~~~~~~~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~-------- 182 (261)
T cd07493 111 SLGYTTFDNPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDA-------- 182 (261)
T ss_pred CCCcCCCCCcccccccccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEecc--------
Confidence 9998633211 124577788899999999999999999763 344556789999997531
Q ss_pred EeCCCeEEeeeeeccCCCCcceeEEEcccCccCCcCCCCCCCCCCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCce
Q 007328 369 VLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGV 448 (608)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~ 448 (608)
T Consensus 183 -------------------------------------------------------------------------------- 182 (261)
T cd07493 183 -------------------------------------------------------------------------------- 182 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEEeCCCCCCccccCCCcccEEEEeHhhHHHHHHHHhcCCCCeEEEEeCeEEeccCCCCcccccccCCCCCCCCCCCC
Q 007328 449 GLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILK 528 (608)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fSs~Gp~~~~d~~~K 528 (608)
.+.++.||++||+. |+++|
T Consensus 183 -----------------------------------------------------------~~~~~~~S~~G~~~--~~~~~ 201 (261)
T cd07493 183 -----------------------------------------------------------NGNKASFSSIGPTA--DGRLK 201 (261)
T ss_pred -----------------------------------------------------------CCCCCccCCcCCCC--CCCcC
Confidence 14677899999997 69999
Q ss_pred CccccCCCcEeecccCCCCCCccccCccccceeeccchhhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCc
Q 007328 529 PDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTGN 601 (608)
Q Consensus 529 PDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~tA~ 601 (608)
|||+|||.++++.... +.|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 202 pdi~a~G~~~~~~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 202 PDVMALGTGIYVINGD-------------GNITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred CceEecCCCeEEEcCC-------------CcEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 9999999999985544 67999999999999999999999999999999999999999985
No 11
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=100.00 E-value=1.3e-46 Score=377.30 Aligned_cols=247 Identities=30% Similarity=0.365 Sum_probs=194.5
Q ss_pred CCceEEEEeeccccCCCCCCCCCCCCCCCCCCcceeecccccCCcCCCceeeeeEecccccccccCCCCCCCCCCCCCCC
Q 007328 142 GQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDM 221 (608)
Q Consensus 142 G~gV~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~d~ 221 (608)
|+||+|||||+|||++||+|.+.-.. |.. ..+.....+.+. ......+.|.
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~~~~-----~~~--------------~~~~~~~~~~d~----------~~~~~~~~d~ 51 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNKYRG-----WGG--------------GSADHDYNWFDP----------VGNTPLPYDD 51 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhcccc-----cCC--------------CCcccccccccC----------CCCCCCCCCC
Confidence 89999999999999999999864100 000 000000001000 0113445678
Q ss_pred CCCcccchhhhccCCCCCCCCCCCcCCccceeccCcceEEEEeeecCCCccCccCCCCCCHHHHHHHHHHHHH-------
Q 007328 222 DGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIR------- 294 (608)
Q Consensus 222 ~gHGThVAgiiag~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~~------- 294 (608)
.+|||||||||+|... ... ..||||+|+|+.+|+++... +...+++++++|+++
T Consensus 52 ~~HGT~vagii~g~~~---------~~~-~~GvAp~a~i~~~~~~~~~~---------~~~~~~~~a~~~~~~~~~~~~~ 112 (264)
T cd07481 52 NGHGTHTMGTMVGNDG---------DGQ-QIGVAPGARWIACRALDRNG---------GNDADYLRCAQWMLAPTDSAGN 112 (264)
T ss_pred CCchhhhhhheeecCC---------CCC-ceEECCCCeEEEEEeecCCC---------CcHHHHHHHHHHHHhccccccc
Confidence 8999999999998732 111 26999999999999998764 778899999999975
Q ss_pred -----CCCcEEEeccCCCCCCCCcccHHHHHHHHHHhCCcEEEEecCCCCCCCCC---CCCCCCceEEeeecccCcceee
Q 007328 295 -----DGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSS---LSNLAPWLITVGAGSLDRDFVG 366 (608)
Q Consensus 295 -----~g~~VIn~SlG~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~---~~~~~~~vitVga~~~~~~~~~ 366 (608)
.+++|||||||.... ....+..+++.+.++|++||+||||++..... .+...+++|+||+++.
T Consensus 113 ~~~~~~~~~Iin~S~G~~~~---~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~------ 183 (264)
T cd07481 113 PADPDLAPDVINNSWGGPSG---DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDR------ 183 (264)
T ss_pred ccccccCCeEEEeCCCcCCC---CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCC------
Confidence 789999999998632 34556667788889999999999999865432 3455789999997532
Q ss_pred eEEeCCCeEEeeeeeccCCCCcceeEEEcccCccCCcCCCCCCCCCCCCCCCCcccceEEEEecCCCchhhHHHHHHHcC
Q 007328 367 PVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAG 446 (608)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g 446 (608)
T Consensus 184 -------------------------------------------------------------------------------- 183 (264)
T cd07481 184 -------------------------------------------------------------------------------- 183 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEEeCCCCCCccccCCCcccEEEEeHhhHHHHHHHHhcCCCCeEEEEeCeEEeccCCCCcccccccCCCCCCCCCC
Q 007328 447 GVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYI 526 (608)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fSs~Gp~~~~d~~ 526 (608)
.+.++.||++||.. +++
T Consensus 184 -------------------------------------------------------------~~~~~~~S~~g~~~--~~~ 200 (264)
T cd07481 184 -------------------------------------------------------------NDVLADFSSRGPST--YGR 200 (264)
T ss_pred -------------------------------------------------------------CCCCccccCCCCCC--CCC
Confidence 24678999999998 499
Q ss_pred CCCccccCCCcEeecccCCCCCCccccCccccceeeccchhhHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHhcCc
Q 007328 527 LKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPD--WSSAAIRSALMTTGN 601 (608)
Q Consensus 527 ~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~--lt~~~ik~~L~~tA~ 601 (608)
+||||+|||++|.++.+. +.|..++|||||||+|||++|||+|++|+ ++++|||++|++||+
T Consensus 201 ~~~dv~ApG~~i~s~~~~-------------~~~~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 201 IKPDISAPGVNIRSAVPG-------------GGYGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred cCceEEECCCCeEEecCC-------------CceEeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 999999999999999887 78999999999999999999999999999 999999999999995
No 12
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=100.00 E-value=3.3e-46 Score=385.12 Aligned_cols=223 Identities=26% Similarity=0.280 Sum_probs=166.7
Q ss_pred CCCCCCcccchhhhccCCCCCCCCCCCcCCccceeccCcceEEEEeeecCCCccCccCCCCCCHHHHHHHHHHHHHCCCc
Q 007328 219 RDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVH 298 (608)
Q Consensus 219 ~d~~gHGThVAgiiag~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~ 298 (608)
.|+.+|||||||||||+.. ....+.||||+|+|+.+|+++..... ......+++|++++++.+++
T Consensus 182 ~d~~gHGThVAGIIAg~~~---------~~~~~~GVAP~A~I~svkv~d~~~gs------~~t~~~l~~ai~~ai~~gad 246 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFP---------EEPERNGVAPGAQIVSIKIGDTRLGS------METGTALVRAMIAAIETKCD 246 (412)
T ss_pred CCCCCCHHHHHHHHhCCCC---------CCCceEEecCCCeEEEEEeccCCCCC------ccchHHHHHHHHHHHHcCCC
Confidence 4778999999999999832 22345799999999999998754300 12335699999999999999
Q ss_pred EEEeccCCCCCCCCcccHHHHHHHH-HHhCCcEEEEecCCCCCCCCCCCC---CCCceEEeeecccCcceeeeEEeCCCe
Q 007328 299 VLSISIGTNQPFAFNRDGIAIGALN-AVKHNILVACSAGNSGPAPSSLSN---LAPWLITVGAGSLDRDFVGPVVLGTGM 374 (608)
Q Consensus 299 VIn~SlG~~~~~~~~~~~~~~~~~~-a~~~Gi~vV~AAGN~g~~~~~~~~---~~~~vitVga~~~~~~~~~~~~~~~~~ 374 (608)
|||||||....... ...+..++.+ +.++|++||+||||+|+..++... ..++||+|||............+
T Consensus 247 VIN~SlG~~~~~~~-~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~y~~---- 321 (412)
T cd04857 247 LINMSYGEATHWPN-SGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAEYSL---- 321 (412)
T ss_pred EEEecCCcCCCCcc-chHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCcccccccc----
Confidence 99999998632221 2234344444 457899999999999987766543 35799999985422110000000
Q ss_pred EEeeeeeccCCCCcceeEEEcccCccCCcCCCCCCCCCCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEEe
Q 007328 375 EIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGN 454 (608)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~~~~~~~ 454 (608)
T Consensus 322 -------------------------------------------------------------------------------- 321 (412)
T cd04857 322 -------------------------------------------------------------------------------- 321 (412)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccccCCCcccEEEEeHhhHHHHHHHHhcCCCCeEEEEeCeEEeccCCCCcccccccCCCCCCCCCCCCCccccC
Q 007328 455 SPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAP 534 (608)
Q Consensus 455 ~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fSs~Gp~~~~d~~~KPDI~AP 534 (608)
.....+.++.||||||+. ||++||||+||
T Consensus 322 -------------------------------------------------~~~~~~~~~~fSSrGP~~--dG~~~pdI~AP 350 (412)
T cd04857 322 -------------------------------------------------REKLPGNQYTWSSRGPTA--DGALGVSISAP 350 (412)
T ss_pred -------------------------------------------------ccccCCccccccccCCcc--cCCcCceEEeC
Confidence 001135688999999998 79999999999
Q ss_pred CCcEeecccCCCCCCccccCccccceeeccchhhHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHhcCcCC
Q 007328 535 GLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKA----IHPDWSSAAIRSALMTTGNNN 603 (608)
Q Consensus 535 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~lt~~~ik~~L~~tA~~~ 603 (608)
|+.|.|.-... ...|..|+|||||||||||++|||++ .+|.++|.+||++|++||+++
T Consensus 351 G~~I~s~p~~~-----------~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 351 GGAIASVPNWT-----------LQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred CCcEEEcccCC-----------CCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 99998752211 15789999999999999999999985 468999999999999999975
No 13
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=100.00 E-value=7e-46 Score=387.31 Aligned_cols=285 Identities=29% Similarity=0.387 Sum_probs=214.4
Q ss_pred hhcccc-CCCceEEEEeeccccCCCCCCCCCCCCCCCC-----CCcceeecccccCCcCCCceeeeeEecccccccccCC
Q 007328 135 LLSKAR-YGQDVIVGLVDNGVWPESKSFSDEGMGPVPK-----SWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGP 208 (608)
Q Consensus 135 ~~~~~~-tG~gV~VaViDtGid~~Hp~f~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~ 208 (608)
+|.++. +|+||+|+|||||||++||+|.+....+... .+...+..+. ....+.+++..++|.++...
T Consensus 2 ~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~---- 74 (346)
T cd07475 2 LWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIGY---GKYYNEKVPFAYNYADNNDD---- 74 (346)
T ss_pred hhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccCCC---CcccccCCCeeEcCCCCCCc----
Confidence 677777 9999999999999999999998764332111 1111111111 12456677777777754221
Q ss_pred CCCCCCCCCCCCCCCCcccchhhhccCCCCCCCCCCCcCCccceeccCcceEEEEeeecC--CCccCccCCCCCCHHHHH
Q 007328 209 LNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWA--TPKASKAAGNTCFEADML 286 (608)
Q Consensus 209 ~~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~--~~~~~~~~~~~~~~~~i~ 286 (608)
.....|..+|||||||||+|...+.. ....+.||||+|+|+.+|+++. .. ......++
T Consensus 75 ------~~~~~~~~~HGT~vagiiag~~~~~~------~~~~~~GiAp~a~l~~~~v~~~~~~~--------~~~~~~~~ 134 (346)
T cd07475 75 ------ILDEDDGSSHGMHVAGIVAGNGDEED------NGEGIKGVAPEAQLLAMKVFSNPEGG--------STYDDAYA 134 (346)
T ss_pred ------cCCCCCCCCcHHHHHHHHhcCCCccc------cCCceEEeCCCCeEEEEEeecCCCCC--------CCCHHHHH
Confidence 12245788999999999999842210 0234579999999999999974 33 47788899
Q ss_pred HHHHHHHHCCCcEEEeccCCCCCCCCcccHHHHHHHHHHhCCcEEEEecCCCCCCCCCC----------------CCCCC
Q 007328 287 AAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSL----------------SNLAP 350 (608)
Q Consensus 287 ~ai~~a~~~g~~VIn~SlG~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~----------------~~~~~ 350 (608)
++++++++.+++|||||||...........+..+++++.++|++||+||||+|...... +...+
T Consensus 135 ~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~ 214 (346)
T cd07475 135 KAIEDAVKLGADVINMSLGSTAGFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATAD 214 (346)
T ss_pred HHHHHHHHcCCCEEEECCCcCCCCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCC
Confidence 99999999999999999999755445667888888999999999999999998543221 12245
Q ss_pred ceEEeeecccCcceeeeEEeCCCeEEeeeeeccCCCCcceeEEEcccCccCCcCCCCCCCCCCCCCCCCcccceEEEEec
Q 007328 351 WLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMR 430 (608)
Q Consensus 351 ~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~ 430 (608)
++|+|+++...
T Consensus 215 ~~i~Vga~~~~--------------------------------------------------------------------- 225 (346)
T cd07475 215 DVLTVASANKK--------------------------------------------------------------------- 225 (346)
T ss_pred CceEEeecccc---------------------------------------------------------------------
Confidence 66666654200
Q ss_pred CCCchhhHHHHHHHcCceEEEEEeCCCCCCccccCCCcccEEEEeHhhHHHHHHHHhcCCCCeEEEEeCeEEeccCCCCc
Q 007328 431 GSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPF 510 (608)
Q Consensus 431 g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (608)
......+.
T Consensus 226 ------------------------------------------------------------------------~~~~~~~~ 233 (346)
T cd07475 226 ------------------------------------------------------------------------VPNPNGGQ 233 (346)
T ss_pred ------------------------------------------------------------------------cCCCCCCc
Confidence 00112367
Q ss_pred ccccccCCCCCCCCCCCCCccccCCCcEeecccCCCCCCccccCccccceeeccchhhHHHHHHHHHHHHHHh----CCC
Q 007328 511 MANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAI----HPD 586 (608)
Q Consensus 511 ~~~fSs~Gp~~~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~p~ 586 (608)
++.||+|||+. ++++||||+|||++|+++... +.|..++|||||||+|||++|||+|+ +|+
T Consensus 234 ~~~~S~~G~~~--~~~~~pdi~apG~~i~s~~~~-------------~~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~ 298 (346)
T cd07475 234 MSGFSSWGPTP--DLDLKPDITAPGGNIYSTVND-------------NTYGYMSGTSMASPHVAGASALVKQRLKEKYPK 298 (346)
T ss_pred cCCCcCCCCCc--ccCcCCeEEeCCCCeEEecCC-------------CceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 88999999998 699999999999999998876 78999999999999999999999998 789
Q ss_pred CCHHH----HHHHHHhcCcC
Q 007328 587 WSSAA----IRSALMTTGNN 602 (608)
Q Consensus 587 lt~~~----ik~~L~~tA~~ 602 (608)
+++.+ ||++|++||.+
T Consensus 299 l~~~~~~~~ik~~l~~ta~~ 318 (346)
T cd07475 299 LSGEELVDLVKNLLMNTATP 318 (346)
T ss_pred CCHHHHHHHHHHHHHhcCCc
Confidence 99887 78888899984
No 14
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.5e-46 Score=373.74 Aligned_cols=258 Identities=29% Similarity=0.428 Sum_probs=206.0
Q ss_pred CCceEEEEeeccccCCCCCCCCCCCCCCCCCCcceeecccccCCcCCCceeeeeEecccccccccCCCCCCCCCCCCCCC
Q 007328 142 GQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDM 221 (608)
Q Consensus 142 G~gV~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~d~ 221 (608)
|+||+|+|||+||+++||+|.+.... ...+.... .......|.
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~---------------------------~~~~~~~~----------~~~~~~~d~ 43 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIR---------------------------FADFVNTV----------NGRTTPYDD 43 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccc---------------------------cccccccc----------cCCCCCCCC
Confidence 89999999999999999999864210 00111000 123456678
Q ss_pred CCCcccchhhhccCCCCCCCCCCCcCCccceeccCcceEEEEeeecCCCccCccCCCCCCHHHHHHHHHHHHHC----CC
Q 007328 222 DGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRD----GV 297 (608)
Q Consensus 222 ~gHGThVAgiiag~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~~~----g~ 297 (608)
.+|||||||||+|...+ ..+.+.||||+|+|+.+|+++..+ .....+++++++|+++. ++
T Consensus 44 ~~HGT~vAgiiag~~~~--------~~~~~~Giap~a~i~~~~v~~~~~--------~~~~~~~~~ai~~~~~~~~~~~~ 107 (264)
T cd07487 44 NGHGTHVAGIIAGSGRA--------SNGKYKGVAPGANLVGVKVLDDSG--------SGSESDIIAGIDWVVENNEKYNI 107 (264)
T ss_pred CCchHHHHHHHhcCCcc--------cCCceEEECCCCeEEEEEeecCCC--------CccHHHHHHHHHHHHhhccccCc
Confidence 89999999999998421 123457999999999999999876 57788999999999998 99
Q ss_pred cEEEeccCCCCCCCCcccHHHHHHHHHHhCCcEEEEecCCCCCCCC--CCCCCCCceEEeeecccCcceeeeEEeCCCeE
Q 007328 298 HVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPS--SLSNLAPWLITVGAGSLDRDFVGPVVLGTGME 375 (608)
Q Consensus 298 ~VIn~SlG~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~--~~~~~~~~vitVga~~~~~~~~~~~~~~~~~~ 375 (608)
+|||||||.........+.+..+++++.++|++||+||||++.... ..+...+++|+|||+..+..
T Consensus 108 ~Iin~S~g~~~~~~~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~------------ 175 (264)
T cd07487 108 RVVNLSLGAPPDPSYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP------------ 175 (264)
T ss_pred eEEEeccCCCCCCCCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC------------
Confidence 9999999997554667788999999999999999999999997765 34456789999998643210
Q ss_pred EeeeeeccCCCCcceeEEEcccCccCCcCCCCCCCCCCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEEeC
Q 007328 376 IIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNS 455 (608)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~ 455 (608)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccccCCCcccEEEEeHhhHHHHHHHHhcCCCCeEEEEeCeEEeccCCCCcccccccCCCCCCCCCCCCCccccCC
Q 007328 456 PANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPG 535 (608)
Q Consensus 456 ~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fSs~Gp~~~~d~~~KPDI~APG 535 (608)
....++.||++||+. ++++||||+|||
T Consensus 176 ---------------------------------------------------~~~~~~~~s~~G~~~--~~~~~~di~apG 202 (264)
T cd07487 176 ---------------------------------------------------HDDGISYFSSRGPTG--DGRIKPDVVAPG 202 (264)
T ss_pred ---------------------------------------------------CCccccccccCCCCC--CCCcCCCEEccc
Confidence 012478899999998 699999999999
Q ss_pred CcEeecccCCCCCCccccCccccceeeccchhhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCc
Q 007328 536 LNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTGN 601 (608)
Q Consensus 536 ~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~tA~ 601 (608)
++|.++.+.... ......+.|..++|||||||+|||++|||+|++|.+++.+||++|++||+
T Consensus 203 ~~i~~~~~~~~~----~~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 203 ENIVSCRSPGGN----PGAGVGSGYFEMSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred cceEeccccccc----cCCCCCCceEeccccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 999998654211 11122367899999999999999999999999999999999999999985
No 15
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.3e-45 Score=379.14 Aligned_cols=264 Identities=31% Similarity=0.405 Sum_probs=210.7
Q ss_pred hhhhccccCCCceEEEEeeccccCCCCCCCCCCCCCCCCCCcceeecccccCCcCCCceeeeeEecccc-cccccCCCCC
Q 007328 133 QDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKG-FEQLYGPLNA 211 (608)
Q Consensus 133 ~~~~~~~~tG~gV~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~-~~~~~~~~~~ 211 (608)
+++|..+++|+||+|||||+|||++||+|.++-.. ..++.+.++|..+ +. ..+.
T Consensus 3 ~~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~~---------------------~~~~~~~~d~~~~~~~----~~~~ 57 (312)
T cd07489 3 DKLHAEGITGKGVKVAVVDTGIDYTHPALGGCFGP---------------------GCKVAGGYDFVGDDYD----GTNP 57 (312)
T ss_pred hhHHhCCCCCCCCEEEEEECCCCCCChhhhcCCCC---------------------CceeccccccCCcccc----cccC
Confidence 58999999999999999999999999999864111 1122223333211 11 0111
Q ss_pred CCCCCCCCCCCCCcccchhhhccCCCCCCCCCCCcCCccceeccCcceEEEEeeecCCCccCccCCCCCCHHHHHHHHHH
Q 007328 212 TEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDD 291 (608)
Q Consensus 212 ~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~ 291 (608)
..+...+.|..+|||||||||+|... . ..+.||||+|+|+.+|+++..+ ......++++++|
T Consensus 58 ~~~~~~~~d~~gHGT~vAgiia~~~~---------~-~~~~GiAp~a~i~~~~v~~~~~--------~~~~~~~~~ai~~ 119 (312)
T cd07489 58 PVPDDDPMDCQGHGTHVAGIIAANPN---------A-YGFTGVAPEATLGAYRVFGCSG--------STTEDTIIAAFLR 119 (312)
T ss_pred CCCCCCCCCCCCcHHHHHHHHhcCCC---------C-CceEEECCCCEEEEEEeecCCC--------CCCHHHHHHHHHH
Confidence 22344567789999999999999832 1 2357999999999999998766 5778889999999
Q ss_pred HHHCCCcEEEeccCCCCCCCCcccHHHHHHHHHHhCCcEEEEecCCCCCCCC---CCCCCCCceEEeeecccCcceeeeE
Q 007328 292 AIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPS---SLSNLAPWLITVGAGSLDRDFVGPV 368 (608)
Q Consensus 292 a~~~g~~VIn~SlG~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~---~~~~~~~~vitVga~~~~~~~~~~~ 368 (608)
+++++++|||||||... .+....+...++++.++|+++|+||||+|.... ..+...+++|+||+++
T Consensus 120 a~~~~~~iIn~S~g~~~--~~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~--------- 188 (312)
T cd07489 120 AYEDGADVITASLGGPS--GWSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD--------- 188 (312)
T ss_pred HHhcCCCEEEeCCCcCC--CCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec---------
Confidence 99999999999999852 334477888888999999999999999986532 2234567888888631
Q ss_pred EeCCCeEEeeeeeccCCCCcceeEEEcccCccCCcCCCCCCCCCCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCce
Q 007328 369 VLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGV 448 (608)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~ 448 (608)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEEeCCCCCCccccCCCcccEEEEeHhhHHHHHHHHhcCCCCeEEEEeCeEEeccCCCCcccccccCCCCCCCCCCCC
Q 007328 449 GLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILK 528 (608)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fSs~Gp~~~~d~~~K 528 (608)
+.||++||+. +.+.|
T Consensus 189 ---------------------------------------------------------------~~~s~~g~~~--~~~~k 203 (312)
T cd07489 189 ---------------------------------------------------------------SYFSSWGPTN--ELYLK 203 (312)
T ss_pred ---------------------------------------------------------------CCccCCCCCC--CCCcC
Confidence 4689999998 58999
Q ss_pred CccccCCCcEeecccCCCCCCccccCccccceeeccchhhHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHhcCcCCccc
Q 007328 529 PDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIH-PDWSSAAIRSALMTTGNNNCCV 606 (608)
Q Consensus 529 PDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-p~lt~~~ik~~L~~tA~~~~~~ 606 (608)
|||+|||++++++++... +.|..++|||||||+|||++|||+|++ |.+++.+||++|++||+++.+.
T Consensus 204 pdv~ApG~~i~~~~~~~~-----------~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~ 271 (312)
T cd07489 204 PDVAAPGGNILSTYPLAG-----------GGYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWS 271 (312)
T ss_pred ccEEcCCCCEEEeeeCCC-----------CceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcccccc
Confidence 999999999999987632 459999999999999999999999999 9999999999999999998764
No 16
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=6.1e-46 Score=365.44 Aligned_cols=228 Identities=26% Similarity=0.316 Sum_probs=186.5
Q ss_pred eEEEEeeccccCCCCCCCCCCCCCCCCCCcceeecccccCCcCCCceeeeeEecccccccccCCCCCCCCCCCCCCCCCC
Q 007328 145 VIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGH 224 (608)
Q Consensus 145 V~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~gH 224 (608)
|+|||||||||.+||+|.++. +...++. .....|..+|
T Consensus 1 V~VavIDsGvd~~hp~l~~~~---------------------------~~~~~~~---------------~~~~~~~~~H 38 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVV---------------------------IARLFFA---------------GPGAPAPSAH 38 (239)
T ss_pred CEEEEEeCCCCCCCcccccCc---------------------------cccccCC---------------CCCCCCCCCC
Confidence 789999999999999997541 1111111 1135567899
Q ss_pred cccchhhhccCCCCCCCCCCCcCCccceeccCcceEEEEeeecCCCccCccCCCCCCHHHHHHHHHHHHHCCCcEEEecc
Q 007328 225 GTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISI 304 (608)
Q Consensus 225 GThVAgiiag~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~Sl 304 (608)
||||||||+|... .. .||||+|+|+.+|++...+... .++..++++||+|+++++++||||||
T Consensus 39 GT~vAgiia~~~~---------~~---~Gvap~a~i~~~~v~~~~~~~~-----~~~~~~i~~ai~~a~~~g~~VIn~S~ 101 (239)
T cd05561 39 GTAVASLLAGAGA---------QR---PGLLPGADLYGADVFGRAGGGE-----GASALALARALDWLAEQGVRVVNISL 101 (239)
T ss_pred HHHHHHHHhCCCC---------CC---cccCCCCEEEEEEEecCCCCCC-----CcCHHHHHHHHHHHHHCCCCEEEeCC
Confidence 9999999999831 11 5999999999999988653111 36778899999999999999999999
Q ss_pred CCCCCCCCcccHHHHHHHHHHhCCcEEEEecCCCCCCC-CCCCCCCCceEEeeecccCcceeeeEEeCCCeEEeeeeecc
Q 007328 305 GTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAP-SSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTP 383 (608)
Q Consensus 305 G~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~~~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (608)
|.. ....+..+++++.++|++||+||||+|... ..+++..+++|+|++++.
T Consensus 102 g~~-----~~~~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~----------------------- 153 (239)
T cd05561 102 AGP-----PNALLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDA----------------------- 153 (239)
T ss_pred CCC-----CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecC-----------------------
Confidence 974 235677888999999999999999999753 345556789999987532
Q ss_pred CCCCcceeEEEcccCccCCcCCCCCCCCCCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCCCCCccc
Q 007328 384 YNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYS 463 (608)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 463 (608)
T Consensus 154 -------------------------------------------------------------------------------- 153 (239)
T cd05561 154 -------------------------------------------------------------------------------- 153 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCcccEEEEeHhhHHHHHHHHhcCCCCeEEEEeCeEEeccCCCCcccccccCCCCCCCCCCCCCccccCCCcEeeccc
Q 007328 464 YDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWS 543 (608)
Q Consensus 464 ~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fSs~Gp~~~~d~~~KPDI~APG~~I~sa~~ 543 (608)
.+.++.||++|+.. ||+|||++|+++.+
T Consensus 154 --------------------------------------------~~~~~~~s~~g~~~--------di~ApG~~i~~~~~ 181 (239)
T cd05561 154 --------------------------------------------RGRLYREANRGAHV--------DFAAPGVDVWVAAP 181 (239)
T ss_pred --------------------------------------------CCCccccCCCCCcc--------eEEccccceecccC
Confidence 24677899999987 99999999999876
Q ss_pred CCCCCCccccCccccceeeccchhhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCcc
Q 007328 544 EASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTGNNNCC 605 (608)
Q Consensus 544 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~tA~~~~~ 605 (608)
. +.|..++|||||||+|||++|||+|++| +++.|||++|++||+++.-
T Consensus 182 ~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta~~~g~ 229 (239)
T cd05561 182 G-------------GGYRYVSGTSFAAPFVTAALALLLQASP-LAPDDARARLAATAKDLGP 229 (239)
T ss_pred C-------------CCEEEeCCHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhccCC
Confidence 6 7899999999999999999999999999 9999999999999998753
No 17
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=100.00 E-value=3.6e-45 Score=368.62 Aligned_cols=264 Identities=27% Similarity=0.308 Sum_probs=199.9
Q ss_pred hhhccccCCCceEEEEeeccccCCCCCCCCCCCCCCCCCCcceeecccccCCcCCCceeeeeEecccccccccCCCCCCC
Q 007328 134 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 213 (608)
Q Consensus 134 ~~~~~~~tG~gV~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~ 213 (608)
++|..+++|+||+|+|||||||++||+|.+..... +...+...+..... ...
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~~-------------------------~~~~~~~~~~~~~~---~~~ 52 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDGD-------------------------GYDPAVNGYNFVPN---VGD 52 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccCCCCC-------------------------CcccccCCcccccc---cCC
Confidence 37999999999999999999999999998651100 00000011000000 001
Q ss_pred CCCCCCCCCCCcccchhhhccCCCCCCCCCCCcCCccceeccCcceEEEEeeecCCCccCccCCCCCCHHHHHHHHHHHH
Q 007328 214 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 293 (608)
Q Consensus 214 ~~~~~~d~~gHGThVAgiiag~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~ 293 (608)
......|..||||||||||+|...... ..|+.. .+.|+||+|+|+.+|+++... ......++++|+|++
T Consensus 53 ~~~~~~~~~gHGT~VAgiia~~~~~~~-~~g~i~--~~~gvap~a~l~~~~v~~~~~--------~~~~~~~~~ai~~a~ 121 (273)
T cd07485 53 IDNDVSVGGGHGTHVAGTIAAVNNNGG-GVGGIA--GAGGVAPGVKIMSIQIFAGRY--------YVGDDAVAAAIVYAA 121 (273)
T ss_pred cCCCCCCCCCCHHHHHHHHHcccCCCc-ceeccc--cccccCCCCEEEEEEEECCCC--------CccHHHHHHHHHHHH
Confidence 123455678999999999999742211 110111 234699999999999999765 577888999999999
Q ss_pred HCCCcEEEeccCCCCCCCCcccHHHHHHHHHHhC-------CcEEEEecCCCCCCCCCCCCCCCceEEeeecccCcceee
Q 007328 294 RDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKH-------NILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVG 366 (608)
Q Consensus 294 ~~g~~VIn~SlG~~~~~~~~~~~~~~~~~~a~~~-------Gi~vV~AAGN~g~~~~~~~~~~~~vitVga~~~~~~~~~ 366 (608)
+.+++|||||||... ...+...+..+++.+.++ |++||+||||++......++..+++|+|++++.
T Consensus 122 ~~g~~Vin~S~g~~~-~~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~------ 194 (273)
T cd07485 122 DNGAVILQNSWGGTG-GGIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDT------ 194 (273)
T ss_pred HcCCcEEEecCCCCC-ccccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccC------
Confidence 999999999999852 233445667777888777 999999999999877666777889999997532
Q ss_pred eEEeCCCeEEeeeeeccCCCCcceeEEEcccCccCCcCCCCCCCCCCCCCCCCcccceEEEEecCCCchhhHHHHHHHcC
Q 007328 367 PVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAG 446 (608)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g 446 (608)
T Consensus 195 -------------------------------------------------------------------------------- 194 (273)
T cd07485 195 -------------------------------------------------------------------------------- 194 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEEeCCCCCCccccCCCcccEEEEeHhhHHHHHHHHhcCCCCeEEEEeCeEEeccCCCCcccccccCCCCCCCCCC
Q 007328 447 GVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYI 526 (608)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fSs~Gp~~~~d~~ 526 (608)
.+.++.||++|+..
T Consensus 195 -------------------------------------------------------------~~~~~~~S~~g~~~----- 208 (273)
T cd07485 195 -------------------------------------------------------------NDNKASFSNYGRWV----- 208 (273)
T ss_pred -------------------------------------------------------------CCCcCccccCCCce-----
Confidence 24667899999987
Q ss_pred CCCccccCCC-cEeecccCCCCCCccccCccccceeeccchhhHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHhc
Q 007328 527 LKPDITAPGL-NILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPD-WSSAAIRSALMTT 599 (608)
Q Consensus 527 ~KPDI~APG~-~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~-lt~~~ik~~L~~t 599 (608)
||+|||+ .|+++.+.... .....|..++|||||||+|||++|||+|++|+ +++.|||++|++|
T Consensus 209 ---~i~apG~~~i~~~~~~~~~-------~~~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 209 ---DIAAPGVGTILSTVPKLDG-------DGGGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred ---EEEeCCCCccccccccccC-------CCCCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 9999999 89888765321 11267899999999999999999999999999 9999999999986
No 18
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=100.00 E-value=6.1e-45 Score=363.70 Aligned_cols=233 Identities=31% Similarity=0.434 Sum_probs=196.1
Q ss_pred hhccccCCCceEEEEeeccccCCCCCCCCCCCCCCCCCCcceeecccccCCcCCCceeeeeEecccccccccCCCCCCCC
Q 007328 135 LLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATED 214 (608)
Q Consensus 135 ~~~~~~tG~gV~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~ 214 (608)
+|..+++|+||+|||||+||+++||+|.++ +...+.+...
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~---------------------------~~~~~~~~~~------------- 56 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGR---------------------------AIWGADFVGG------------- 56 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCC---------------------------eeeeeecCCC-------------
Confidence 777889999999999999999999999754 1122222211
Q ss_pred CCCCCCCCCCcccchhhhccCCCCCCCCCCCcCCccceeccCcceEEEEeeecCCCccCccCCCCCCHHHHHHHHHHHHH
Q 007328 215 DRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIR 294 (608)
Q Consensus 215 ~~~~~d~~gHGThVAgiiag~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~~ 294 (608)
....|..+|||||||||++.. .||||+|+|+.+|+++..+ ....+.++.+++|+++
T Consensus 57 -~~~~d~~~HGT~vAgiia~~~---------------~GvAp~a~i~~~~i~~~~~--------~~~~~~~~~ai~~~~~ 112 (255)
T cd04077 57 -DPDSDCNGHGTHVAGTVGGKT---------------YGVAKKANLVAVKVLDCNG--------SGTLSGIIAGLEWVAN 112 (255)
T ss_pred -CCCCCCCccHHHHHHHHHccc---------------cCcCCCCeEEEEEEeCCCC--------CcCHHHHHHHHHHHHh
Confidence 225678899999999999861 4999999999999999876 5788999999999998
Q ss_pred C-----CCcEEEeccCCCCCCCCcccHHHHHHHHHHhCCcEEEEecCCCCCCC-CCCCCCCCceEEeeecccCcceeeeE
Q 007328 295 D-----GVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAP-SSLSNLAPWLITVGAGSLDRDFVGPV 368 (608)
Q Consensus 295 ~-----g~~VIn~SlG~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~~~vitVga~~~~~~~~~~~ 368 (608)
. +++|||||||... ...+..+++++.++|+++|+||||+|... ...+...+++|+||+++.+
T Consensus 113 ~~~~~~~~~iin~S~g~~~-----~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~~------- 180 (255)
T cd04077 113 DATKRGKPAVANMSLGGGA-----STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDSD------- 180 (255)
T ss_pred cccccCCCeEEEeCCCCCC-----CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCCC-------
Confidence 7 4899999999852 56677788999999999999999999765 3445567899999985421
Q ss_pred EeCCCeEEeeeeeccCCCCcceeEEEcccCccCCcCCCCCCCCCCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCce
Q 007328 369 VLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGV 448 (608)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~ 448 (608)
T Consensus 181 -------------------------------------------------------------------------------- 180 (255)
T cd04077 181 -------------------------------------------------------------------------------- 180 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEEeCCCCCCccccCCCcccEEEEeHhhHHHHHHHHhcCCCCeEEEEeCeEEeccCCCCcccccccCCCCCCCCCCCC
Q 007328 449 GLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILK 528 (608)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fSs~Gp~~~~d~~~K 528 (608)
+.++.||++||..
T Consensus 181 ------------------------------------------------------------~~~~~~S~~g~~~------- 193 (255)
T cd04077 181 ------------------------------------------------------------DARASFSNYGSCV------- 193 (255)
T ss_pred ------------------------------------------------------------CCccCcccCCCCC-------
Confidence 4577899999988
Q ss_pred CccccCCCcEeecccCCCCCCccccCccccceeeccchhhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCcC
Q 007328 529 PDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTGNN 602 (608)
Q Consensus 529 PDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~tA~~ 602 (608)
||+|||.+|.++..... +.|..++|||||||+|||++|||+|++|+++++|||++|++||++
T Consensus 194 -~i~apG~~i~~~~~~~~-----------~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 194 -DIFAPGVDILSAWIGSD-----------TATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred -cEEeCCCCeEecccCCC-----------CcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 99999999999877421 689999999999999999999999999999999999999999975
No 19
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.1e-45 Score=373.83 Aligned_cols=268 Identities=24% Similarity=0.204 Sum_probs=189.1
Q ss_pred EEEEeeccccCCCCCCCCCCCCCCCCCCcceeecccccCCcCCCceeeeeEecccccccccCCCCCCCCCCCCCCCCCCc
Q 007328 146 IVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHG 225 (608)
Q Consensus 146 ~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHG 225 (608)
+|||||||||.+||+|.+.- .....+... .....|..|||
T Consensus 2 ~VaviDtGi~~~hp~l~~~~---------------------------~~~~~~~~~-------------~~~~~d~~gHG 41 (291)
T cd04847 2 IVCVLDSGINRGHPLLAPAL---------------------------AEDDLDSDE-------------PGWTADDLGHG 41 (291)
T ss_pred EEEEecCCCCCCChhhhhhh---------------------------ccccccccC-------------CCCcCCCCCCh
Confidence 79999999999999997541 111111100 11156889999
Q ss_pred ccchhhhccCCCCCCCCCCCcCCccceeccCcceEEEEeeecCCCccCccCCCCCCHHHHHHHHHHHHHCC---CcEEEe
Q 007328 226 THTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDG---VHVLSI 302 (608)
Q Consensus 226 ThVAgiiag~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~~~g---~~VIn~ 302 (608)
|||||||++.... .....|+||+++|+.+|+++..+... ......+++++|+|+++.+ ++||||
T Consensus 42 T~vAgiia~~~~~---------~~~~~gvap~~~l~~~kv~~~~g~~~----~~~~~~~~~~ai~~a~~~~~~~~~ViN~ 108 (291)
T cd04847 42 TAVAGLALYGDLT---------LPGNGLPRPGCRLESVRVLPPNGEND----PELYGDITLRAIRRAVIQNPDIVRVFNL 108 (291)
T ss_pred HHHHHHHHcCccc---------CCCCCCcccceEEEEEEEcCCCCCCC----ccChHHHHHHHHHHHHHhCCCceeEEEE
Confidence 9999999976321 22346999999999999998864100 0356778999999999853 499999
Q ss_pred ccCCCCCCCCcc-cHHHHHHHH-HHhCCcEEEEecCCCCCCCCCC------------CCCCCceEEeeecccCcceeeeE
Q 007328 303 SIGTNQPFAFNR-DGIAIGALN-AVKHNILVACSAGNSGPAPSSL------------SNLAPWLITVGAGSLDRDFVGPV 368 (608)
Q Consensus 303 SlG~~~~~~~~~-~~~~~~~~~-a~~~Gi~vV~AAGN~g~~~~~~------------~~~~~~vitVga~~~~~~~~~~~ 368 (608)
|||......... ..+..++++ +.++|++||+||||++...... ++..+++|+|||++.+.......
T Consensus 109 SlG~~~~~~~~~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~s 188 (291)
T cd04847 109 SLGSPLPIDDGRPSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDRA 188 (291)
T ss_pred ecCCCCCccCCCCCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCcc
Confidence 999964332222 356666654 5689999999999999765432 23467999999976543210000
Q ss_pred EeCCCeEEeeeeeccCCCCcceeEEEcccCccCCcCCCCCCCCCCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCce
Q 007328 369 VLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGV 448 (608)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~ 448 (608)
..
T Consensus 189 ~~------------------------------------------------------------------------------ 190 (291)
T cd04847 189 RY------------------------------------------------------------------------------ 190 (291)
T ss_pred cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred EEEEEeCCCCCCccccCCCcccEEEEeHhhHHHHHHHHhcCCCCeEEEEeCeEEeccCCCCcccccccCCCCCCCCCCCC
Q 007328 449 GLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILK 528 (608)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fSs~Gp~~~~d~~~K 528 (608)
+.......+.||++||.. ++++|
T Consensus 191 -------------------------------------------------------~~~~~~~~~~fs~~Gp~~--~~~~K 213 (291)
T cd04847 191 -------------------------------------------------------SAVGPAPAGATTSSGPGS--PGPIK 213 (291)
T ss_pred -------------------------------------------------------cccccccCCCccccCCCC--CCCcC
Confidence 000012234499999998 69999
Q ss_pred CccccCCCcEeecccCCCCC-----CccccCccccceeeccchhhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCc
Q 007328 529 PDITAPGLNILAAWSEASSP-----SKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTGN 601 (608)
Q Consensus 529 PDI~APG~~I~sa~~~~~~~-----~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~tA~ 601 (608)
|||+|||++|.+..+..... ...........|..++|||||||+|||++|||+|++|+++|.+||++|++||+
T Consensus 214 PDl~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 214 PDVVAFGGNLAYDPSGNAADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred CcEEeeCCceeecCCCCCccCcceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 99999999998865421100 00001122378999999999999999999999999999999999999999985
No 20
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=100.00 E-value=1.6e-44 Score=361.93 Aligned_cols=241 Identities=30% Similarity=0.381 Sum_probs=202.8
Q ss_pred hhhhccccCCCceEEEEeeccccCCCCCCCCCCCCCCCCCCcceeecccccCCcCCCceeeeeEecccccccccCCCCCC
Q 007328 133 QDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNAT 212 (608)
Q Consensus 133 ~~~~~~~~tG~gV~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~ 212 (608)
..+|..+ +|+||+|+|||+||+++||+|... ++...+++..+
T Consensus 19 ~~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~--------------------------~~~~~~~~~~~----------- 60 (260)
T cd07484 19 PKAWDIT-GGSGVTVAVVDTGVDPTHPDLLKV--------------------------KFVLGYDFVDN----------- 60 (260)
T ss_pred HHHHhhc-CCCCCEEEEEeCCCCCCCcccccC--------------------------CcccceeccCC-----------
Confidence 4889888 999999999999999999998432 12222233221
Q ss_pred CCCCCCCCCCCCcccchhhhccCCCCCCCCCCCcCCccceeccCcceEEEEeeecCCCccCccCCCCCCHHHHHHHHHHH
Q 007328 213 EDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDA 292 (608)
Q Consensus 213 ~~~~~~~d~~gHGThVAgiiag~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a 292 (608)
...+.|..+|||||||||++... ....+.|+||+|+|+.+|+++..+ .+...+++++++++
T Consensus 61 --~~~~~d~~~HGT~vagii~~~~~---------~~~~~~Giap~a~l~~~~v~~~~~--------~~~~~~~~~ai~~a 121 (260)
T cd07484 61 --DSDAMDDNGHGTHVAGIIAAATN---------NGTGVAGVAPKAKIMPVKVLDANG--------SGSLADIANGIRYA 121 (260)
T ss_pred --CCCCCCCCCcHHHHHHHHhCccC---------CCCceEeECCCCEEEEEEEECCCC--------CcCHHHHHHHHHHH
Confidence 23366788999999999998732 222357999999999999998766 57888999999999
Q ss_pred HHCCCcEEEeccCCCCCCCCcccHHHHHHHHHHhCCcEEEEecCCCCCCCCCCCCCCCceEEeeecccCcceeeeEEeCC
Q 007328 293 IRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGT 372 (608)
Q Consensus 293 ~~~g~~VIn~SlG~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~vitVga~~~~~~~~~~~~~~~ 372 (608)
++.+++|||||||... ....+..+++.+.++|++||+||||+|......++..+++|+||+.+.
T Consensus 122 ~~~~~~iin~S~g~~~----~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~------------ 185 (260)
T cd07484 122 ADKGAKVINLSLGGGL----GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQ------------ 185 (260)
T ss_pred HHCCCeEEEecCCCCC----CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCC------------
Confidence 9999999999999853 445677777888999999999999999887788888899999997532
Q ss_pred CeEEeeeeeccCCCCcceeEEEcccCccCCcCCCCCCCCCCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEE
Q 007328 373 GMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLIL 452 (608)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~~~~~ 452 (608)
T Consensus 186 -------------------------------------------------------------------------------- 185 (260)
T cd07484 186 -------------------------------------------------------------------------------- 185 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeCCCCCCccccCCCcccEEEEeHhhHHHHHHHHhcCCCCeEEEEeCeEEeccCCCCcccccccCCCCCCCCCCCCCccc
Q 007328 453 GNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDIT 532 (608)
Q Consensus 453 ~~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fSs~Gp~~~~d~~~KPDI~ 532 (608)
.+.++.||++|+.. |++
T Consensus 186 -------------------------------------------------------~~~~~~~s~~g~~~--------~~~ 202 (260)
T cd07484 186 -------------------------------------------------------DDKRASFSNYGKWV--------DVS 202 (260)
T ss_pred -------------------------------------------------------CCCcCCcCCCCCCc--------eEE
Confidence 14667899999887 999
Q ss_pred cCCCcEeecccCCCCCCccccCccccceeeccchhhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCC
Q 007328 533 APGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTGNNN 603 (608)
Q Consensus 533 APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~tA~~~ 603 (608)
|||++|.++.+. +.|..++|||||||+|||++||++|++| +++.+||++|++||+++
T Consensus 203 apG~~i~~~~~~-------------~~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 203 APGGGILSTTPD-------------GDYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred eCCCCcEeecCC-------------CCEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 999999998776 6899999999999999999999999999 99999999999999986
No 21
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.8e-44 Score=365.42 Aligned_cols=269 Identities=38% Similarity=0.531 Sum_probs=202.8
Q ss_pred CCceEEEEeeccccCCCCCCCCCCCCCCCCCCcceeecccccCCcCCCceeeeeEecccccccccCCC--CCCCCCCCCC
Q 007328 142 GQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPL--NATEDDRSPR 219 (608)
Q Consensus 142 G~gV~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~--~~~~~~~~~~ 219 (608)
|+||+|||||+|||++||+|.+.. ..+.++....+|........... ..........
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPG---------------------FPNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAG 59 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCC---------------------CCCCceeeeeECccCCCCcccccccccccccCCCC
Confidence 899999999999999999998542 12233444444442211100000 0000112345
Q ss_pred CCCCCcccchhhhccCCCCCCCCCCCcCCccceeccCcceEEEEeeecCCCccCccCCCCCCHHHHHHHHHHHHHCCCcE
Q 007328 220 DMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHV 299 (608)
Q Consensus 220 d~~gHGThVAgiiag~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~V 299 (608)
|..+|||||||+|+|... ....+.||||+|+|+.+|+++..+ .....+++++++|+++.+++|
T Consensus 60 ~~~~HGT~vAgiiag~~~---------n~~~~~Giap~a~i~~~~~~~~~~--------~~~~~~~~~ai~~a~~~~~~I 122 (295)
T cd07474 60 DATGHGTHVAGIIAGNGV---------NVGTIKGVAPKADLYAYKVLGPGG--------SGTTDVIIAAIEQAVDDGMDV 122 (295)
T ss_pred CCCCcHHHHHHHHhcCCC---------ccCceEeECCCCeEEEEEeecCCC--------CCCHHHHHHHHHHHHHcCCCE
Confidence 689999999999999832 233457999999999999998655 578889999999999999999
Q ss_pred EEeccCCCCCCCCcccHHHHHHHHHHhCCcEEEEecCCCCCCCCCC--CCCCCceEEeeecccCcceeeeEEeCCCeEEe
Q 007328 300 LSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSL--SNLAPWLITVGAGSLDRDFVGPVVLGTGMEII 377 (608)
Q Consensus 300 In~SlG~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~--~~~~~~vitVga~~~~~~~~~~~~~~~~~~~~ 377 (608)
||||||... ....+.+..+++++.++|+++|+||||+|...... +...+++|+||++....
T Consensus 123 in~S~g~~~--~~~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~--------------- 185 (295)
T cd07474 123 INLSLGSSV--NGPDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVAD--------------- 185 (295)
T ss_pred EEeCCCCCC--CCCCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccC---------------
Confidence 999999852 22456778888999999999999999998765544 44578999999854110
Q ss_pred eeeeccCCCCcceeEEEcccCccCCcCCCCCCCCCCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCC
Q 007328 378 GKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPA 457 (608)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~ 457 (608)
T Consensus 186 -------------------------------------------------------------------------------- 185 (295)
T cd07474 186 -------------------------------------------------------------------------------- 185 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccCCCcccEEEEeHhhHHHHHHHHhcCCCCeEEEEeCeEEeccCCCCcccccccC-CCCCCCCCCCCCccccCCC
Q 007328 458 NGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSR-GPNALDPYILKPDITAPGL 536 (608)
Q Consensus 458 ~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fSs~-Gp~~~~d~~~KPDI~APG~ 536 (608)
.........|+++ |++. +.++||||+|||+
T Consensus 186 -----------------------------------------------~~~~~~~~~~~s~~~~~~--~~~~kpdv~apG~ 216 (295)
T cd07474 186 -----------------------------------------------VAEADTVGPSSSRGPPTS--DSAIKPDIVAPGV 216 (295)
T ss_pred -----------------------------------------------cCCCCceeccCCCCCCCC--CCCcCCCEECCcC
Confidence 0001233344554 5554 6899999999999
Q ss_pred cEeecccCCCCCCccccCccccceeeccchhhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCcc
Q 007328 537 NILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTGNNNCC 605 (608)
Q Consensus 537 ~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~tA~~~~~ 605 (608)
+|.+++.... ..|..++|||||||+|||++|||+|++|+|++++||++|++||+++..
T Consensus 217 ~i~~~~~~~~-----------~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~ 274 (295)
T cd07474 217 DIMSTAPGSG-----------TGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYD 274 (295)
T ss_pred ceEeeccCCC-----------CceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCccccc
Confidence 9999987631 678999999999999999999999999999999999999999998764
No 22
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.7e-44 Score=358.12 Aligned_cols=253 Identities=29% Similarity=0.305 Sum_probs=188.9
Q ss_pred ceEEEEeeccccCCCCCCCCCCCCCCCCCCcceeecccccCCcCCCceeeeeEecccccccccCCCCCCCCCCCCCCCCC
Q 007328 144 DVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDG 223 (608)
Q Consensus 144 gV~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 223 (608)
||+|||||+|||++||+|.+.- .....|..+. ........|..+
T Consensus 1 GV~VaviDsGv~~~hp~l~~~~---------------------------~~~~~~~~~~---------~~~~~~~~d~~~ 44 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGRV---------------------------AQWADFDENR---------RISATEVFDAGG 44 (254)
T ss_pred CCEEEEEeCCCCCCCcchhccc---------------------------CCceeccCCC---------CCCCCCCCCCCC
Confidence 7999999999999999997541 1112222110 012344567889
Q ss_pred CcccchhhhccCCCCCCCCCCCcCCccceeccCcceEEEEeeecCCCccCccCCCCCCHHHHHHHHHHHHHCCCcEEEec
Q 007328 224 HGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSIS 303 (608)
Q Consensus 224 HGThVAgiiag~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S 303 (608)
|||||||||+|... ++...||||+++|+.+|+++..+ ....+++++++|+++.+++|||||
T Consensus 45 HGT~vAgiia~~~~----------~~~~~GvAp~a~i~~~~v~~~~~---------~~~~~~~~ai~~a~~~~~~Vin~S 105 (254)
T cd07490 45 HGTHVSGTIGGGGA----------KGVYIGVAPEADLLHGKVLDDGG---------GSLSQIIAGMEWAVEKDADVVSMS 105 (254)
T ss_pred cHHHHHHHHhcCCC----------CCCEEEECCCCEEEEEEEecCCC---------CcHHHHHHHHHHHHhCCCCEEEEC
Confidence 99999999999832 23346999999999999998764 778899999999999999999999
Q ss_pred cCCCCCCCCcccHHHHHHHHHHh-CCcEEEEecCCCCCCCCCCCCCCCceEEeeecccCcceeeeEEeCCCeEEeeeeec
Q 007328 304 IGTNQPFAFNRDGIAIGALNAVK-HNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVT 382 (608)
Q Consensus 304 lG~~~~~~~~~~~~~~~~~~a~~-~Gi~vV~AAGN~g~~~~~~~~~~~~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (608)
||..... .+.+..+++.+.+ +|++||+||||+|......+...+++|+|||++.+........
T Consensus 106 ~g~~~~~---~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s~------------- 169 (254)
T cd07490 106 LGGTYYS---EDPLEEAVEALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWFSS------------- 169 (254)
T ss_pred CCcCCCC---CcHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCccC-------------
Confidence 9986322 5666666676665 6999999999999876666677899999998754321000000
Q ss_pred cCCCCcceeEEEcccCccCCcCCCCCCCCCCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCCCCCcc
Q 007328 383 PYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEY 462 (608)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 462 (608)
T Consensus 170 -------------------------------------------------------------------------------- 169 (254)
T cd07490 170 -------------------------------------------------------------------------------- 169 (254)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCcccEEEEeHhhHHHHHHHHhcCCCCeEEEEeCeEEeccCCCCcccccccCCCCCCCCCCCCCccccCCCcEeecc
Q 007328 463 SYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAW 542 (608)
Q Consensus 463 ~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fSs~Gp~~~~d~~~KPDI~APG~~I~sa~ 542 (608)
.........+.+|... +...||||+|||.+|+++.
T Consensus 170 --------------------------------------------~g~~~~~~~~~~~~~~-~~~~~~d~~apG~~i~~~~ 204 (254)
T cd07490 170 --------------------------------------------FGSSGASLVSAPDSPP-DEYTKPDVAAPGVDVYSAR 204 (254)
T ss_pred --------------------------------------------CcccccccccCCCCCc-cCCcCceEEeccCCeEccc
Confidence 0001222233344432 4679999999999999865
Q ss_pred cCCCCCCccccCccccceeeccchhhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCc
Q 007328 543 SEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTGN 601 (608)
Q Consensus 543 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~tA~ 601 (608)
... ...+.|..++|||||||+|||++|||+|++|++++.|||++|++||+
T Consensus 205 ~~~---------~~~~~~~~~~GTS~AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 205 QGA---------NGDGQYTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred cCC---------CCCCCeeecccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 221 11277999999999999999999999999999999999999999985
No 23
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=8.5e-44 Score=360.95 Aligned_cols=208 Identities=26% Similarity=0.320 Sum_probs=167.4
Q ss_pred CCCCCCCCCcccchhhhccCCCCCCCCCCCcCCccceeccCcceEEEEeeecCCCccCccCCCCCCHHHHHHHHHHHH--
Q 007328 216 RSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI-- 293 (608)
Q Consensus 216 ~~~~d~~gHGThVAgiiag~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~-- 293 (608)
....+..+|||||||||+|... ....+.||||+|+|+.+|+++..+ ...+++++|++|+.
T Consensus 65 ~~~~~~~~HGT~vAgiiaa~~~---------~~~~~~GvAp~a~i~~~~v~~~~~---------~~~~~i~~a~~~a~~~ 126 (285)
T cd07496 65 SGVSPSSWHGTHVAGTIAAVTN---------NGVGVAGVAWGARILPVRVLGKCG---------GTLSDIVDGMRWAAGL 126 (285)
T ss_pred CCCCCCCCCHHHHHHHHhCcCC---------CCCCceeecCCCeEEEEEEecCCC---------CcHHHHHHHHHHHhcc
Confidence 3455678999999999999842 122346999999999999998776 58889999999998
Q ss_pred --------HCCCcEEEeccCCCCCCCCcccHHHHHHHHHHhCCcEEEEecCCCCCCC-CCCCCCCCceEEeeecccCcce
Q 007328 294 --------RDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAP-SSLSNLAPWLITVGAGSLDRDF 364 (608)
Q Consensus 294 --------~~g~~VIn~SlG~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~~~vitVga~~~~~~~ 364 (608)
.++++|||||||..... ...+..+++.+.++|++||+||||++... ...+...+++|+|||++.
T Consensus 127 ~~~~~~~~~~~~~Iin~S~G~~~~~---~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~---- 199 (285)
T cd07496 127 PVPGVPVNPNPAKVINLSLGGDGAC---SATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDL---- 199 (285)
T ss_pred CcCCCcccCCCCeEEEeCCCCCCCC---CHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCC----
Confidence 45789999999985221 56677888999999999999999999765 455566789999997532
Q ss_pred eeeEEeCCCeEEeeeeeccCCCCcceeEEEcccCccCCcCCCCCCCCCCCCCCCCcccceEEEEecCCCchhhHHHHHHH
Q 007328 365 VGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKR 444 (608)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~ 444 (608)
T Consensus 200 -------------------------------------------------------------------------------- 199 (285)
T cd07496 200 -------------------------------------------------------------------------------- 199 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCceEEEEEeCCCCCCccccCCCcccEEEEeHhhHHHHHHHHhcCCCCeEEEEeCeEEeccCCCCcccccccCCCCCCCC
Q 007328 445 AGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDP 524 (608)
Q Consensus 445 ~g~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fSs~Gp~~~~d 524 (608)
.+.++.||++|+..
T Consensus 200 ---------------------------------------------------------------~~~~~~~S~~g~~v--- 213 (285)
T cd07496 200 ---------------------------------------------------------------RGQRASYSNYGPAV--- 213 (285)
T ss_pred ---------------------------------------------------------------CCCcccccCCCCCC---
Confidence 24678899999987
Q ss_pred CCCCCccccCCCcEeecccCCCCCC--ccccCccccceeeccchhhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 007328 525 YILKPDITAPGLNILAAWSEASSPS--KLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTT 599 (608)
Q Consensus 525 ~~~KPDI~APG~~I~sa~~~~~~~~--~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~t 599 (608)
||+|||++|.++........ ..........|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 214 -----di~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 214 -----DVSAPGGDCASDVNGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred -----CEEeCCCCccccCCCCccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 99999999998876532110 00111223678999999999999999999999999999999999999976
No 24
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7.4e-44 Score=360.81 Aligned_cols=251 Identities=25% Similarity=0.264 Sum_probs=185.1
Q ss_pred chhhhccccCCCceEEEEeeccccCCCCCCCCCCCCCCCCCCcceeecccccCCcCCCceeeeeEecccccccccCCCCC
Q 007328 132 GQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNA 211 (608)
Q Consensus 132 ~~~~~~~~~tG~gV~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~ 211 (608)
+.++|..+++|+||+||||||||+..|| |..+.+. + ++ .+..+
T Consensus 10 ~~~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~~-------~---------------~~----~~~~~---------- 52 (298)
T cd07494 10 ATRVHQRGITGRGVRVAMVDTGFYAHPF-FESRGYQ-------V---------------RV----VLAPG---------- 52 (298)
T ss_pred hhHHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCcc-------c---------------ee----ecCCC----------
Confidence 3589999999999999999999999888 7643210 0 00 01000
Q ss_pred CCCCCCCCCCCCCcccchhhhccCCCCCCCCCCCcCCccceeccCcceEEEEeeecCCCccCccCCCCCCHHHHHHHHHH
Q 007328 212 TEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDD 291 (608)
Q Consensus 212 ~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~ 291 (608)
......|+.||||||||++ .||||+|+|+.+|+++. ..++++++|+|
T Consensus 53 --~~~~~~D~~gHGT~vag~i-------------------~GvAP~a~i~~vkv~~~------------~~~~~~~ai~~ 99 (298)
T cd07494 53 --ATDPACDENGHGTGESANL-------------------FAIAPGAQFIGVKLGGP------------DLVNSVGAFKK 99 (298)
T ss_pred --CCCCCCCCCCcchheeece-------------------eEeCCCCeEEEEEccCC------------CcHHHHHHHHH
Confidence 1234567889999999876 39999999999999763 34578999999
Q ss_pred HHHCCCcEEEeccCCCCCCC---------CcccHHHHHHHHHHhCCcEEEEecCCCCCCCCCCCCCCCceEEeeecccCc
Q 007328 292 AIRDGVHVLSISIGTNQPFA---------FNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDR 362 (608)
Q Consensus 292 a~~~g~~VIn~SlG~~~~~~---------~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~vitVga~~~~~ 362 (608)
+++++++|||||||...... .....+..+++++.++|++||+||||++. .+++..|+||+|||++.+.
T Consensus 100 a~~~g~dVIn~SlG~~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~~ 176 (298)
T cd07494 100 AISLSPDIISNSWGYDLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVDE 176 (298)
T ss_pred HHhcCCCEEEeecccCCCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEeccC
Confidence 99999999999999853221 12345788888999999999999999974 4577889999999864321
Q ss_pred ceeeeEEeCCCeEEeeeeeccCCCCcceeEEEcccCccCCcCCCCCCCCCCCCCCCCcccceEEEEecCCCchhhHHHHH
Q 007328 363 DFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEV 442 (608)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~ 442 (608)
.-
T Consensus 177 ~g------------------------------------------------------------------------------ 178 (298)
T cd07494 177 DG------------------------------------------------------------------------------ 178 (298)
T ss_pred CC------------------------------------------------------------------------------
Confidence 00
Q ss_pred HHcCceEEEEEeCCCCCCccccCCCcccEEEEeHhhHHHHHHHHhcCCCCeEEEEeCeEEeccCCCCcccccc--cCCCC
Q 007328 443 KRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFT--SRGPN 520 (608)
Q Consensus 443 ~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fS--s~Gp~ 520 (608)
.....++ ++...
T Consensus 179 ------------------------------------------------------------------~~~~~~~~~~~~s~ 192 (298)
T cd07494 179 ------------------------------------------------------------------ARRASSYASGFRSK 192 (298)
T ss_pred ------------------------------------------------------------------cccccccccCcccc
Confidence 0001111 12111
Q ss_pred CCCCCCCCCcc----------------ccCCCcEeecccCCCCCCccccCccccceeeccchhhHHHHHHHHHHHHHHhC
Q 007328 521 ALDPYILKPDI----------------TAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIH 584 (608)
Q Consensus 521 ~~~d~~~KPDI----------------~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~ 584 (608)
. .+++.|||+ +|||..|.++...... .....+.|..++|||||||||||++|||+|++
T Consensus 193 ~-~~g~~~pd~~~~~g~~~~~~~~~~~~APG~~i~~~~~~~~~-----~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~ 266 (298)
T cd07494 193 I-YPGRQVPDVCGLVGMLPHAAYLMLPVPPGSQLDRSCAAFPD-----GTPPNDGWGVFSGTSAAAPQVAGVCALMLQAN 266 (298)
T ss_pred c-CCCCccCccccccCcCCcccccccccCCCcceeccccCCCC-----CCCCCCCeEeeccchHHHHHHHHHHHHHHHhC
Confidence 1 257888887 3799988765532100 01122679999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCcCCcc
Q 007328 585 PDWSSAAIRSALMTTGNNNCC 605 (608)
Q Consensus 585 p~lt~~~ik~~L~~tA~~~~~ 605 (608)
|.++++|||++|++||+++..
T Consensus 267 p~~~~~~v~~~l~~ta~~~~~ 287 (298)
T cd07494 267 PGLSPERARSLLNKTARDVTK 287 (298)
T ss_pred CCCCHHHHHHHHHHhCcccCC
Confidence 999999999999999998754
No 25
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.5e-44 Score=354.17 Aligned_cols=241 Identities=28% Similarity=0.330 Sum_probs=191.8
Q ss_pred eEEEEeeccccCCCCCCCCCCCCCCCCCCcceeecccccCCcCCCceeeeeEecccccccccCCCCCCCCCCCCCCCCCC
Q 007328 145 VIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGH 224 (608)
Q Consensus 145 V~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~gH 224 (608)
|+|||||+||+++||+|.+.. ++.....+.. +.....|..+|
T Consensus 1 V~VaviDsGi~~~hp~l~~~~-------------------------~~~~~~~~~~-------------~~~~~~~~~~H 42 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKP-------------------------KLVPGWNFVS-------------NNDPTSDIDGH 42 (242)
T ss_pred CEEEEecCCCCCCChhhccCc-------------------------CccCCccccC-------------CCCCCCCCCCC
Confidence 689999999999999998530 0111111111 12245678999
Q ss_pred cccchhhhccCCCCCCCCCCCcCCccceeccCcceEEEEeeecCCCccCccCCCCCCHHHHHHHHHHHHHCCCcEEEecc
Q 007328 225 GTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISI 304 (608)
Q Consensus 225 GThVAgiiag~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~Sl 304 (608)
||||||||+|+.. ....+.||||+|+|+.+|+++..+ .....++.++++|+++.+++||||||
T Consensus 43 GT~vAgiiag~~~---------~~~~~~Gvap~a~i~~~~~~~~~~--------~~~~~~~~~ai~~a~~~~~~Vin~S~ 105 (242)
T cd07498 43 GTACAGVAAAVGN---------NGLGVAGVAPGAKLMPVRIADSLG--------YAYWSDIAQAITWAADNGADVISNSW 105 (242)
T ss_pred HHHHHHHHHhccC---------CCceeEeECCCCEEEEEEEECCCC--------CccHHHHHHHHHHHHHCCCeEEEecc
Confidence 9999999999832 123357999999999999998775 47788999999999999999999999
Q ss_pred CCCCCCCCcccHHHHHHHHHHh-CCcEEEEecCCCCCCCCCCCCCCCceEEeeecccCcceeeeEEeCCCeEEeeeeecc
Q 007328 305 GTNQPFAFNRDGIAIGALNAVK-HNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTP 383 (608)
Q Consensus 305 G~~~~~~~~~~~~~~~~~~a~~-~Gi~vV~AAGN~g~~~~~~~~~~~~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (608)
|...........+..++.++.. +|++||+||||+|......+...+++|+|||++.
T Consensus 106 g~~~~~~~~~~~~~~~~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~----------------------- 162 (242)
T cd07498 106 GGSDSTESISSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDS----------------------- 162 (242)
T ss_pred CCCCCCchHHHHHHHHHHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCC-----------------------
Confidence 9865444556778888888888 9999999999999876666777899999998542
Q ss_pred CCCCcceeEEEcccCccCCcCCCCCCCCCCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCCCCCccc
Q 007328 384 YNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYS 463 (608)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 463 (608)
T Consensus 163 -------------------------------------------------------------------------------- 162 (242)
T cd07498 163 -------------------------------------------------------------------------------- 162 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCcccEEEEeHhhHHHHHHHHhcCCCCeEEEEeCeEEeccCCCCcccccccCCCCCCCCCCCCCccccCCCcEeeccc
Q 007328 464 YDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWS 543 (608)
Q Consensus 464 ~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fSs~Gp~~~~d~~~KPDI~APG~~I~sa~~ 543 (608)
.+.++.||++||.. |++|||+++.+...
T Consensus 163 --------------------------------------------~~~~~~~s~~g~~~--------~~~apG~~~~~~~~ 190 (242)
T cd07498 163 --------------------------------------------NDARASYSNYGNYV--------DLVAPGVGIWTTGT 190 (242)
T ss_pred --------------------------------------------CCCccCcCCCCCCe--------EEEeCcCCcccCCc
Confidence 14678999999988 99999999988754
Q ss_pred CCCCCCccccCccccceeeccchhhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 007328 544 EASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTT 599 (608)
Q Consensus 544 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~t 599 (608)
.... ......+.|..++|||||||+|||++|||+|++|+|+++|||++|++|
T Consensus 191 ~~~~----~~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 191 GRGS----AGDYPGGGYGSFSGTSFASPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred cccc----cccCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 3211 011123678899999999999999999999999999999999999976
No 26
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=100.00 E-value=2e-43 Score=360.59 Aligned_cols=279 Identities=30% Similarity=0.339 Sum_probs=199.5
Q ss_pred cccCCCceEEEEeeccccCCCCCCCCCCCCCCCCCCcceeecccccCCcCCCceeeeeEecccccccccCCCCCCCCCCC
Q 007328 138 KARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRS 217 (608)
Q Consensus 138 ~~~tG~gV~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~ 217 (608)
++++|+||+|||||+|||++||+|.+... .+.. ...+++.....+. ..
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~------------~~~~----~~~~~~~~~~~~~----------------~~ 49 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNF------------NKTN----LFHRKIVRYDSLS----------------DT 49 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCc------------CcCc----cCcccEEEeeccC----------------CC
Confidence 57899999999999999999999976421 0000 1223333332222 11
Q ss_pred CCCCCCCcccchhhhccCCCCCCCCCCCcCCccceeccCcceEEEEeeecCCCccCccCCCCCCHHHHHHHHHHHHHCCC
Q 007328 218 PRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGV 297 (608)
Q Consensus 218 ~~d~~gHGThVAgiiag~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~~~g~ 297 (608)
..|..+|||||||||+|....... ...+.||||+|+|+.+|+++..+. .....++..+++++.+.++
T Consensus 50 ~~d~~~HGT~vAgiia~~~~~~~~------~~~~~GvAp~a~i~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 116 (293)
T cd04842 50 KDDVDGHGTHVAGIIAGKGNDSSS------ISLYKGVAPKAKLYFQDIGDTSGN-------LSSPPDLNKLFSPMYDAGA 116 (293)
T ss_pred CCCCCCCcchhheeeccCCcCCCc------ccccccccccCeEEEEEeeccCcc-------ccCCccHHHHHHHHHHhCC
Confidence 227899999999999998432110 013579999999999999887641 2456678899999999999
Q ss_pred cEEEeccCCCCCCCCcccHHHHHHHHHH-h-CCcEEEEecCCCCCCCC---CCCCCCCceEEeeecccCcceeeeEEeCC
Q 007328 298 HVLSISIGTNQPFAFNRDGIAIGALNAV-K-HNILVACSAGNSGPAPS---SLSNLAPWLITVGAGSLDRDFVGPVVLGT 372 (608)
Q Consensus 298 ~VIn~SlG~~~~~~~~~~~~~~~~~~a~-~-~Gi~vV~AAGN~g~~~~---~~~~~~~~vitVga~~~~~~~~~~~~~~~ 372 (608)
+|||||||..... .......+++++. + +|++||+||||++.... ..+...+++|+|||++.......
T Consensus 117 ~Vin~S~G~~~~~--~~~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~------ 188 (293)
T cd04842 117 RISSNSWGSPVNN--GYTLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNG------ 188 (293)
T ss_pred EEEeccCCCCCcc--ccchHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCcccc------
Confidence 9999999996332 1233444444433 3 79999999999997665 45566799999999764421100
Q ss_pred CeEEeeeeeccCCCCcceeEEEcccCccCCcCCCCCCCCCCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEE
Q 007328 373 GMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLIL 452 (608)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~~~~~ 452 (608)
..|..
T Consensus 189 ------------------------------------~~~~~--------------------------------------- 193 (293)
T cd04842 189 ------------------------------------EGGLG--------------------------------------- 193 (293)
T ss_pred ------------------------------------ccccc---------------------------------------
Confidence 00000
Q ss_pred EeCCCCCCccccCCCcccEEEEeHhhHHHHHHHHhcCCCCeEEEEeCeEEeccCCCCcccccccCCCCCCCCCCCCCccc
Q 007328 453 GNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDIT 532 (608)
Q Consensus 453 ~~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fSs~Gp~~~~d~~~KPDI~ 532 (608)
.....+.++.||++||+. ++++||||+
T Consensus 194 ---------------------------------------------------~~~~~~~~~~~S~~G~~~--~~~~~pdv~ 220 (293)
T cd04842 194 ---------------------------------------------------QSDNSDTVASFSSRGPTY--DGRIKPDLV 220 (293)
T ss_pred ---------------------------------------------------ccCCCCccccccCcCCCC--CCCcCCCEE
Confidence 011235788999999998 699999999
Q ss_pred cCCCcEeecccCCCCCCccccCccccceeeccchhhHHHHHHHHHHHHHHhC-----C---CCCHHHHHHHHHhcCc
Q 007328 533 APGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIH-----P---DWSSAAIRSALMTTGN 601 (608)
Q Consensus 533 APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-----p---~lt~~~ik~~L~~tA~ 601 (608)
|||++|+++.+... .........|..++|||||||+|||++|||+|++ | .+++.++|++|++||+
T Consensus 221 ApG~~i~~~~~~~~----~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 221 APGTGILSARSGGG----GIGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred CCCCCeEeccCCCC----CCCCCChhheeecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 99999999975420 0011122678999999999999999999999985 4 6677799999999985
No 27
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.7e-43 Score=354.09 Aligned_cols=250 Identities=21% Similarity=0.180 Sum_probs=178.0
Q ss_pred chhhhccc-cCCCceEEEEeeccccCCCCCCCCCCCCCCCCCCcceeecccccCCcCCCceeeeeEecccccccccCCCC
Q 007328 132 GQDLLSKA-RYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLN 210 (608)
Q Consensus 132 ~~~~~~~~-~tG~gV~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~ 210 (608)
+.++|... .+|+||+|+|||+|||.+||||.++... ...
T Consensus 4 ~~~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~------------------------------~~~---------- 43 (277)
T cd04843 4 ARYAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGIT------------------------------LIS---------- 43 (277)
T ss_pred hHHHHHhcCCCCCcEEEEEecCCCCCCChhhcccccc------------------------------ccC----------
Confidence 35889874 4599999999999999999999864110 000
Q ss_pred CCCCCCCCCCCCCCcccchhhhccCCCCCCCCCCCcCCccceeccCcceEEEEeeecCCCccCccCCCCCCHHHHHHHHH
Q 007328 211 ATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAID 290 (608)
Q Consensus 211 ~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~ 290 (608)
...+.|+++|||||||||+|. ++..| +.||||+|+|+.+|+++ . +...+.|..|++
T Consensus 44 ----~~~~~d~~gHGT~VAGiIaa~---------~n~~G-~~GvAp~a~l~~i~v~~--~--------~~~~~ai~~A~~ 99 (277)
T cd04843 44 ----GLTDQADSDHGTAVLGIIVAK---------DNGIG-VTGIAHGAQAAVVSSTR--V--------SNTADAILDAAD 99 (277)
T ss_pred ----CCCCCCCCCCcchhheeeeee---------cCCCc-eeeeccCCEEEEEEecC--C--------CCHHHHHHHHHh
Confidence 111567889999999999997 22223 36999999999999975 1 233334444444
Q ss_pred HHHHCCCcEEEeccCCCCCCC-----CcccHHHHHHHHHHhCCcEEEEecCCCCCCCCCCC-------------CCCCce
Q 007328 291 DAIRDGVHVLSISIGTNQPFA-----FNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLS-------------NLAPWL 352 (608)
Q Consensus 291 ~a~~~g~~VIn~SlG~~~~~~-----~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~~-------------~~~~~v 352 (608)
|+...++.+||||||...... .....+..++.++.++|+++|+||||++....... ...+++
T Consensus 100 ~~~~~~v~~in~s~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~v 179 (277)
T cd04843 100 YLSPGDVILLEMQTGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGA 179 (277)
T ss_pred ccCCCCEEEEEccccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCe
Confidence 443346678999999863211 12344566778899999999999999986421111 112568
Q ss_pred EEeeecccCcceeeeEEeCCCeEEeeeeeccCCCCcceeEEEcccCccCCcCCCCCCCCCCCCCCCCcccceEEEEecCC
Q 007328 353 ITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGS 432 (608)
Q Consensus 353 itVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~ 432 (608)
|+|||++.+.
T Consensus 180 I~VgA~~~~~---------------------------------------------------------------------- 189 (277)
T cd04843 180 IMVGAGSSTT---------------------------------------------------------------------- 189 (277)
T ss_pred EEEEeccCCC----------------------------------------------------------------------
Confidence 8888753210
Q ss_pred CchhhHHHHHHHcCceEEEEEeCCCCCCccccCCCcccEEEEeHhhHHHHHHHHhcCCCCeEEEEeCeEEeccCCCCccc
Q 007328 433 GFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMA 512 (608)
Q Consensus 433 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (608)
...++
T Consensus 190 ---------------------------------------------------------------------------~~~~~ 194 (277)
T cd04843 190 ---------------------------------------------------------------------------GHTRL 194 (277)
T ss_pred ---------------------------------------------------------------------------CCccc
Confidence 02378
Q ss_pred ccccCCCCCCCCCCCCCccccCCCcEeecccCCCCCCccccCccccceeeccchhhHHHHHHHHHHHHHH----h-CCCC
Q 007328 513 NFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKA----I-HPDW 587 (608)
Q Consensus 513 ~fSs~Gp~~~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~-~p~l 587 (608)
.||++|+.. ||+|||++|+++.+..... ......+.|..++|||||||+|||++|||++ + +|+|
T Consensus 195 ~fSn~G~~v--------di~APG~~i~s~~~~~~~~---~~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~l 263 (277)
T cd04843 195 AFSNYGSRV--------DVYGWGENVTTTGYGDLQD---LGGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPL 263 (277)
T ss_pred cccCCCCcc--------ceEcCCCCeEecCCCCccc---ccCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCC
Confidence 999999987 9999999999998763211 0011113457899999999999999999975 3 4999
Q ss_pred CHHHHHHHHHhcCc
Q 007328 588 SSAAIRSALMTTGN 601 (608)
Q Consensus 588 t~~~ik~~L~~tA~ 601 (608)
+++|||++|++|++
T Consensus 264 t~~~v~~~L~~t~~ 277 (277)
T cd04843 264 TPIEMRELLTATGT 277 (277)
T ss_pred CHHHHHHHHHhcCC
Confidence 99999999999974
No 28
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.6e-42 Score=347.36 Aligned_cols=247 Identities=29% Similarity=0.433 Sum_probs=190.8
Q ss_pred CceEEEEeeccccCCCCCCCCCCCCCCCCCCcce---eecccccCCcCCCceeeeeEeccc---ccccccCCCCCCCCCC
Q 007328 143 QDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGI---CQTGVAFNSSLCNKKIIGARYYLK---GFEQLYGPLNATEDDR 216 (608)
Q Consensus 143 ~gV~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~g~~~~~~---~~~~~~~~~~~~~~~~ 216 (608)
+||+|+|||||||++||+|.++ .|... +..+...+ ...|.+ +|+. .....
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~-------~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~-------~~~~~ 57 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDN-------MWVNPGEIPGNGIDDD----------GNGYVDDIYGWNF-------VNNDN 57 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccc-------cccCcccccccCcccC----------CCCcccCCCcccc-------cCCCC
Confidence 6899999999999999999865 22211 11111000 000110 1111 11245
Q ss_pred CCCCCCCCcccchhhhccCCCCCCCCCCCcCCccceeccCcceEEEEeeecCCCccCccCCCCCCHHHHHHHHHHHHHCC
Q 007328 217 SPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDG 296 (608)
Q Consensus 217 ~~~d~~gHGThVAgiiag~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~~~g 296 (608)
++.|..+|||||||||+|.. .....+.||||+|+|+.+|+++..+ .++..+++++++|+++.+
T Consensus 58 ~~~d~~~HGT~va~ii~~~~---------~~~~~~~GvAp~a~l~~~~~~~~~~--------~~~~~~~~~a~~~a~~~~ 120 (259)
T cd07473 58 DPMDDNGHGTHVAGIIGAVG---------NNGIGIAGVAWNVKIMPLKFLGADG--------SGTTSDAIKAIDYAVDMG 120 (259)
T ss_pred CCCCCCCcHHHHHHHHHCcC---------CCCCceEEeCCCCEEEEEEEeCCCC--------CcCHHHHHHHHHHHHHCC
Confidence 56788999999999999983 2223357999999999999998776 588899999999999999
Q ss_pred CcEEEeccCCCCCCCCcccHHHHHHHHHHhCCcEEEEecCCCCCCC---CCCCC--CCCceEEeeecccCcceeeeEEeC
Q 007328 297 VHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAP---SSLSN--LAPWLITVGAGSLDRDFVGPVVLG 371 (608)
Q Consensus 297 ~~VIn~SlG~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~---~~~~~--~~~~vitVga~~~~~~~~~~~~~~ 371 (608)
++|||+|||.... ...+..++.++.++|++||+||||+|... ..++. ..+++|+||+.+.
T Consensus 121 ~~vin~S~G~~~~----~~~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~----------- 185 (259)
T cd07473 121 AKIINNSWGGGGP----SQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDS----------- 185 (259)
T ss_pred CeEEEeCCCCCCC----CHHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCC-----------
Confidence 9999999998533 56677777889999999999999998652 22332 2478888887432
Q ss_pred CCeEEeeeeeccCCCCcceeEEEcccCccCCcCCCCCCCCCCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEE
Q 007328 372 TGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLI 451 (608)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~~~~ 451 (608)
T Consensus 186 -------------------------------------------------------------------------------- 185 (259)
T cd07473 186 -------------------------------------------------------------------------------- 185 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeCCCCCCccccCCCcccEEEEeHhhHHHHHHHHhcCCCCeEEEEeCeEEeccCCCCcccccccCCCCCCCCCCCCCcc
Q 007328 452 LGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDI 531 (608)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fSs~Gp~~~~d~~~KPDI 531 (608)
.+.++.||++||.. ||+
T Consensus 186 --------------------------------------------------------~~~~~~~s~~g~~~-------~~~ 202 (259)
T cd07473 186 --------------------------------------------------------NDALASFSNYGKKT-------VDL 202 (259)
T ss_pred --------------------------------------------------------CCCcCcccCCCCCC-------cEE
Confidence 24566799999864 499
Q ss_pred ccCCCcEeecccCCCCCCccccCccccceeeccchhhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCc
Q 007328 532 TAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTGN 601 (608)
Q Consensus 532 ~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~tA~ 601 (608)
+|||.++++..+. +.|..++|||||||+|||++|||+|++|.+++++||++|++||+
T Consensus 203 ~apG~~~~~~~~~-------------~~~~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 203 AAPGVDILSTSPG-------------GGYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred EeccCCeEeccCC-------------CcEEEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 9999999997765 78999999999999999999999999999999999999999985
No 29
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=100.00 E-value=1.8e-42 Score=340.62 Aligned_cols=227 Identities=33% Similarity=0.484 Sum_probs=187.7
Q ss_pred ceEEEEeeccccCCCCCCCCCCCCCCCCCCcceeecccccCCcCCCceeeeeEecccccccccCCCCCCCCCCCCCCCCC
Q 007328 144 DVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDG 223 (608)
Q Consensus 144 gV~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 223 (608)
||+|||||+||+.+||+|.+. +....+|... ......|..+
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~---------------------------~~~~~~~~~~------------~~~~~~~~~~ 41 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLN---------------------------IVGGANFTGD------------DNNDYQDGNG 41 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcc---------------------------ccCcccccCC------------CCCCCCCCCC
Confidence 799999999999999999754 1112222211 0134567889
Q ss_pred CcccchhhhccCCCCCCCCCCCcCCccceeccCcceEEEEeeecCCCccCccCCCCCCHHHHHHHHHHHHHCCCcEEEec
Q 007328 224 HGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSIS 303 (608)
Q Consensus 224 HGThVAgiiag~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S 303 (608)
|||||||||++... .. .+.|+||+|+|+.+|+++..+ .....+++++++|+++.+++|||||
T Consensus 42 HGT~vA~ii~~~~~---------~~-~~~giap~a~i~~~~~~~~~~--------~~~~~~l~~ai~~a~~~~~~Vin~S 103 (229)
T cd07477 42 HGTHVAGIIAALDN---------GV-GVVGVAPEADLYAVKVLNDDG--------SGTYSDIIAGIEWAIENGMDIINMS 103 (229)
T ss_pred CHHHHHHHHhcccC---------CC-ccEeeCCCCEEEEEEEECCCC--------CcCHHHHHHHHHHHHHCCCCEEEEC
Confidence 99999999999732 11 347999999999999998876 5677899999999999999999999
Q ss_pred cCCCCCCCCcccHHHHHHHHHHhCCcEEEEecCCCCCCCCCC--CCCCCceEEeeecccCcceeeeEEeCCCeEEeeeee
Q 007328 304 IGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSL--SNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTV 381 (608)
Q Consensus 304 lG~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~--~~~~~~vitVga~~~~~~~~~~~~~~~~~~~~~~~~ 381 (608)
||... ....+..+++.+.++|+++|+||||++...... ++..+++|+||+++.+
T Consensus 104 ~g~~~----~~~~~~~~~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~-------------------- 159 (229)
T cd07477 104 LGGPS----DSPALREAIKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSN-------------------- 159 (229)
T ss_pred CccCC----CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecCC--------------------
Confidence 99852 234566677888999999999999999776554 6678899999985421
Q ss_pred ccCCCCcceeEEEcccCccCCcCCCCCCCCCCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCCCCCc
Q 007328 382 TPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNE 461 (608)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 461 (608)
T Consensus 160 -------------------------------------------------------------------------------- 159 (229)
T cd07477 160 -------------------------------------------------------------------------------- 159 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCcccEEEEeHhhHHHHHHHHhcCCCCeEEEEeCeEEeccCCCCcccccccCCCCCCCCCCCCCccccCCCcEeec
Q 007328 462 YSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAA 541 (608)
Q Consensus 462 ~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fSs~Gp~~~~d~~~KPDI~APG~~I~sa 541 (608)
+.++.||++|+.. |++|||++|+++
T Consensus 160 -----------------------------------------------~~~~~~s~~g~~~--------~~~apg~~i~~~ 184 (229)
T cd07477 160 -----------------------------------------------NNRASFSSTGPEV--------ELAAPGVDILST 184 (229)
T ss_pred -----------------------------------------------CCcCCccCCCCCc--------eEEeCCCCeEEe
Confidence 4567899999987 999999999999
Q ss_pred ccCCCCCCccccCccccceeeccchhhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 007328 542 WSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTT 599 (608)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~t 599 (608)
++. +.|..++|||||||+|||++|||+|++|++++.+||++|++|
T Consensus 185 ~~~-------------~~~~~~~GTS~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 185 YPN-------------NDYAYLSGTSMATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred cCC-------------CCEEEEccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 877 788999999999999999999999999999999999999986
No 30
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7e-42 Score=348.63 Aligned_cols=239 Identities=28% Similarity=0.371 Sum_probs=173.8
Q ss_pred ccccCCCceEEEEeeccccCCCCCCCCCCCCCCCCCCcceeecccccCCcCCCceeeeeEecccccccccCCCCCCCCCC
Q 007328 137 SKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDR 216 (608)
Q Consensus 137 ~~~~tG~gV~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~ 216 (608)
..+++|+||+|||||+|||.+||+|.+... ...+|.. ..
T Consensus 2 ~~~~tG~gv~VaVlDsGv~~~hp~l~~~~~---------------------------~~~~~~~--------------~~ 40 (297)
T cd07480 2 TSPFTGAGVRVAVLDTGIDLTHPAFAGRDI---------------------------TTKSFVG--------------GE 40 (297)
T ss_pred CCCCCCCCCEEEEEcCCCCCCChhhcCCcc---------------------------cCcccCC--------------CC
Confidence 357899999999999999999999985411 1112221 12
Q ss_pred CCCCCCCCcccchhhhccCCCCCCCCCCCcCCccceeccCcceEEEEeeecCCCccCccCCCCCCHHHHHHHHHHHHHCC
Q 007328 217 SPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDG 296 (608)
Q Consensus 217 ~~~d~~gHGThVAgiiag~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~~~g 296 (608)
...|..||||||||||+|+... +...||||+|+|+.+|++.... ......++++|+|+++.+
T Consensus 41 ~~~d~~gHGT~VAgiiag~~~~----------~~~~GvAp~a~i~~~~~~~~~~--------~~~~~~i~~ai~~a~~~g 102 (297)
T cd07480 41 DVQDGHGHGTHCAGTIFGRDVP----------GPRYGVARGAEIALIGKVLGDG--------GGGDGGILAGIQWAVANG 102 (297)
T ss_pred CCCCCCCcHHHHHHHHhcccCC----------CcccccCCCCEEEEEEEEeCCC--------CCcHHHHHHHHHHHHHcC
Confidence 2567899999999999987321 2336999999999999998765 577778999999999999
Q ss_pred CcEEEeccCCCCC---------CCCcccHHHHHHHHH---------------HhCCcEEEEecCCCCCCCCCCCC-----
Q 007328 297 VHVLSISIGTNQP---------FAFNRDGIAIGALNA---------------VKHNILVACSAGNSGPAPSSLSN----- 347 (608)
Q Consensus 297 ~~VIn~SlG~~~~---------~~~~~~~~~~~~~~a---------------~~~Gi~vV~AAGN~g~~~~~~~~----- 347 (608)
++|||||||.... .......++...+.+ .++|++||+||||++........
T Consensus 103 ~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~ 182 (297)
T cd07480 103 ADVISMSLGADFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPA 182 (297)
T ss_pred CCEEEeccCCCCcccccccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCcc
Confidence 9999999998531 111122233333333 68899999999999854332211
Q ss_pred CCCceEEeeecccCcceeeeEEeCCCeEEeeeeeccCCCCcceeEEEcccCccCCcCCCCCCCCCCCCCCCCcccceEEE
Q 007328 348 LAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVL 427 (608)
Q Consensus 348 ~~~~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~ 427 (608)
..+.++.|+++...
T Consensus 183 ~~~~~~~V~~V~~~------------------------------------------------------------------ 196 (297)
T cd07480 183 ACPSAMGVAAVGAL------------------------------------------------------------------ 196 (297)
T ss_pred ccccccEEEEECCC------------------------------------------------------------------
Confidence 12233444332111
Q ss_pred EecCCCchhhHHHHHHHcCceEEEEEeCCCCCCccccCCCcccEEEEeHhhHHHHHHHHhcCCCCeEEEEeCeEEeccCC
Q 007328 428 CMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQP 507 (608)
Q Consensus 428 ~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (608)
T Consensus 197 -------------------------------------------------------------------------------- 196 (297)
T cd07480 197 -------------------------------------------------------------------------------- 196 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccccCCCCCCCCCCCCCccccCCCcEeecccCCCCCCccccCccccceeeccchhhHHHHHHHHHHHHHHhCCCC
Q 007328 508 APFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDW 587 (608)
Q Consensus 508 ~~~~~~fSs~Gp~~~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~l 587 (608)
+....|+++.+. ...||||+|||++|.++.+. +.|..++|||||||+|||++|||+|++|++
T Consensus 197 -~~~~~~~~~~~~----~~~~~dv~ApG~~i~s~~~~-------------~~~~~~sGTS~AaP~VaG~aAll~~~~p~~ 258 (297)
T cd07480 197 -GRTGNFSAVANF----SNGEVDIAAPGVDIVSAAPG-------------GGYRSMSGTSMATPHVAGVAALWAEALPKA 258 (297)
T ss_pred -CCCCCccccCCC----CCCceEEEeCCCCeEeecCC-------------CcEEEeCcHHHHHHHHHHHHHHHHHhCccc
Confidence 122233333332 34578999999999999876 789999999999999999999999999999
Q ss_pred CHHHHHHHHHh
Q 007328 588 SSAAIRSALMT 598 (608)
Q Consensus 588 t~~~ik~~L~~ 598 (608)
++.+++++|++
T Consensus 259 ~~~~~~~~l~~ 269 (297)
T cd07480 259 GGRALAALLQA 269 (297)
T ss_pred CHHHHHHHHHH
Confidence 99998888883
No 31
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4e-42 Score=338.68 Aligned_cols=164 Identities=21% Similarity=0.263 Sum_probs=119.8
Q ss_pred CCceEEEEeeccccCCCCCCCCCCCCCCCCCCcceeecccccCCcCCCceeeeeEecccccccccCCCCCCCCCCCCCCC
Q 007328 142 GQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDM 221 (608)
Q Consensus 142 G~gV~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~d~ 221 (608)
+++|+|||||||||++||+|.++ +...+.|....... ........|.
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~---------------------------i~~~~~~~~~~~~~------~~~~~~~~d~ 48 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGK---------------------------IIGGKSFSPYEGDG------NKVSPYYVSA 48 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccc---------------------------cccCCCCCCCCCCc------ccCCCCCCCC
Confidence 78999999999999999999854 11122222110000 0011223578
Q ss_pred CCCcccchhhhccCCCCCCCCCCCcCCccceeccCcceEEEEeeecCCCccCccCCCCCCHHHHHHHHHHHHHCCCcEEE
Q 007328 222 DGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLS 301 (608)
Q Consensus 222 ~gHGThVAgiiag~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn 301 (608)
.||||||||||+ |+||+|+|+.+|+++..+.... ...+....+++||+||+++|++|||
T Consensus 49 ~gHGT~vAgiI~-------------------gvap~a~i~~~kv~~~~~~~~~--~~~~~~~~i~~Ai~~Ai~~gadIIn 107 (247)
T cd07491 49 DGHGTAMARMIC-------------------RICPSAKLYVIKLEDRPSPDSN--KRSITPQSAAKAIEAAVEKKVDIIS 107 (247)
T ss_pred CCcHHHHHHHHH-------------------HHCCCCeEEEEEecccCCCCCc--ccccCHHHHHHHHHHHHHCCCcEEE
Confidence 899999999994 7899999999999987542100 0025677899999999999999999
Q ss_pred eccCCCCCC--CCcccHHHHHHHHHHhCCcEEEEecCCCCCCCC-CC--CCCCCceEEeeecc
Q 007328 302 ISIGTNQPF--AFNRDGIAIGALNAVKHNILVACSAGNSGPAPS-SL--SNLAPWLITVGAGS 359 (608)
Q Consensus 302 ~SlG~~~~~--~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~-~~--~~~~~~vitVga~~ 359 (608)
||||..... ......+..++.+|.++|++||+||||+|.... .+ +...++||+|||++
T Consensus 108 ~S~g~~~~~~~~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~ 170 (247)
T cd07491 108 MSWTIKKPEDNDNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAAD 170 (247)
T ss_pred eeeecccccccccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeC
Confidence 999985321 123567888889999999999999999997654 33 34568999999864
No 32
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=100.00 E-value=7.4e-42 Score=349.22 Aligned_cols=255 Identities=23% Similarity=0.249 Sum_probs=177.6
Q ss_pred ceEEEEeeccccCCCCCCCCCCCCCCCCCCcceeecccccCCcCCCceeeeeEecccccccccCCCCCCCCCCCCCCCCC
Q 007328 144 DVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDG 223 (608)
Q Consensus 144 gV~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 223 (608)
.|+|||||||||++||+|.++-.. ..+.+...............+.....|..|
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 54 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSISS--------------------------YSKNLVPKGGYDGKEAGETGDINDIVDKLG 54 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhcccc--------------------------cccccccCCCcCCccccccCCCCcCCCCCC
Confidence 389999999999999999853100 000010000000000000111344567899
Q ss_pred CcccchhhhccCCCCCCCCCCCcCCccceeccCcceEEEEeeecCCCccCccCCCCCCHHHHHHHHHHHHHCCCcEEEec
Q 007328 224 HGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSIS 303 (608)
Q Consensus 224 HGThVAgiiag~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S 303 (608)
|||||||+|+|.. . ..||||+|+|+.+|+++..+ .....+++++|+|+++++++|||||
T Consensus 55 HGT~vAgiia~~~---------~----~~GvAp~a~i~~~~v~~~~~--------~~~~~~~~~ai~~a~~~~~~vin~S 113 (294)
T cd07482 55 HGTAVAGQIAANG---------N----IKGVAPGIGIVSYRVFGSCG--------SAESSWIIKAIIDAADDGVDVINLS 113 (294)
T ss_pred cHhHHHHHHhcCC---------C----CceeCCCCEEEEEEeecCCC--------CcCHHHHHHHHHHHHHCCCCEEEeC
Confidence 9999999999872 1 14999999999999998876 4578899999999999999999999
Q ss_pred cCCCCCCCC-------cccHHHHHHHHHHhCCcEEEEecCCCCCCCCC----------------------CCCCCCceEE
Q 007328 304 IGTNQPFAF-------NRDGIAIGALNAVKHNILVACSAGNSGPAPSS----------------------LSNLAPWLIT 354 (608)
Q Consensus 304 lG~~~~~~~-------~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~----------------------~~~~~~~vit 354 (608)
||....... ....+..+++.+.++|++||+||||+|..... .+...+++|+
T Consensus 114 ~G~~~~~~~~~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~vi~ 193 (294)
T cd07482 114 LGGYLIIGGEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDGLDVSNKQELLDFLSSGDDFSVNGEVYDVPASLPNVIT 193 (294)
T ss_pred CccCCCCCcccccchhhhHHHHHHHHHHHHCCCEEEEeCCCCCcccccccccccccccccccccCCcceecccccCceEE
Confidence 998532211 12456777788889999999999999964311 1122344444
Q ss_pred eeecccCcceeeeEEeCCCeEEeeeeeccCCCCcceeEEEcccCccCCcCCCCCCCCCCCCCCCCcccceEEEEecCCCc
Q 007328 355 VGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGF 434 (608)
Q Consensus 355 Vga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~ 434 (608)
|||+
T Consensus 194 Vga~---------------------------------------------------------------------------- 197 (294)
T cd07482 194 VSAT---------------------------------------------------------------------------- 197 (294)
T ss_pred EEee----------------------------------------------------------------------------
Confidence 4443
Q ss_pred hhhHHHHHHHcCceEEEEEeCCCCCCccccCCCcccEEEEeHhhHHHHHHHHhcCCCCeEEEEeCeEEeccCCCCccccc
Q 007328 435 KLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANF 514 (608)
Q Consensus 435 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 514 (608)
...+.++.|
T Consensus 198 -----------------------------------------------------------------------~~~~~~~~~ 206 (294)
T cd07482 198 -----------------------------------------------------------------------DNNGNLSSF 206 (294)
T ss_pred -----------------------------------------------------------------------CCCCCcCcc
Confidence 223577789
Q ss_pred ccCCCCCCCCCCCCCccccCCCcEeecccCCCC---CCc------cccCccccceeeccchhhHHHHHHHHHHHHHHhCC
Q 007328 515 TSRGPNALDPYILKPDITAPGLNILAAWSEASS---PSK------LAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHP 585 (608)
Q Consensus 515 Ss~Gp~~~~d~~~KPDI~APG~~I~sa~~~~~~---~~~------~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p 585 (608)
|++|+... |++|||+++......... ... .......+.|..++|||||||+|||++|||+|++|
T Consensus 207 S~~g~~~~-------~~~apG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~p 279 (294)
T cd07482 207 SNYGNSRI-------DLAAPGGDFLLLDQYGKEKWVNNGLMTKEQILTTAPEGGYAYMYGTSLAAPKVSGALALIIDKNP 279 (294)
T ss_pred ccCCCCcc-------eEECCCCCcccccccCccccccccccccceeeecccCCceEeecchhhhhHHHHHHHHHHHHHCC
Confidence 99987654 999999998533221100 000 00112346789999999999999999999999999
Q ss_pred CCCH-HHHHHHHHhc
Q 007328 586 DWSS-AAIRSALMTT 599 (608)
Q Consensus 586 ~lt~-~~ik~~L~~t 599 (608)
.+++ .|||++|++|
T Consensus 280 ~~~~~~~v~~~L~~T 294 (294)
T cd07482 280 LKKPPDEAIRILYNT 294 (294)
T ss_pred CCCcHHHHHHHHhhC
Confidence 9999 9999999986
No 33
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.7e-41 Score=331.61 Aligned_cols=221 Identities=20% Similarity=0.252 Sum_probs=175.2
Q ss_pred ceEEEEeeccccCCCCCCCCCCCCCCCCCCcceeecccccCCcCCCceeeeeEeccc-ccccccCCCCCCCCCCCCCCCC
Q 007328 144 DVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLK-GFEQLYGPLNATEDDRSPRDMD 222 (608)
Q Consensus 144 gV~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~-~~~~~~~~~~~~~~~~~~~d~~ 222 (608)
||+|||||||||++||+|.++... .+.+.. .+ ........|..
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~~---------------------------~~~~~~~~~---------~~~~~~~~d~~ 44 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLALD---------------------------GEVTIDLEI---------IVVSAEGGDKD 44 (222)
T ss_pred CCEEEEEeCCCCCCChhhhccccc---------------------------ccccccccc---------ccCCCCCCCCC
Confidence 799999999999999999864110 011100 00 01134456788
Q ss_pred CCcccchhhhccCCCCCCCCCCCcCCccceeccCcceEEEEeeecCCCccCccCCCCCCHHHHHHHHHHHHHCCCcEEEe
Q 007328 223 GHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSI 302 (608)
Q Consensus 223 gHGThVAgiiag~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~ 302 (608)
||||||||||++. +|+++|+.+|+++..+ .+....++++++|+++++++||||
T Consensus 45 gHGT~vAgiia~~-------------------~p~~~i~~~~v~~~~~--------~~~~~~~~~ai~~a~~~~v~Vin~ 97 (222)
T cd07492 45 GHGTACAGIIKKY-------------------APEAEIGSIKILGEDG--------RCNSFVLEKALRACVENDIRIVNL 97 (222)
T ss_pred CcHHHHHHHHHcc-------------------CCCCeEEEEEEeCCCC--------CcCHHHHHHHHHHHHHCCCCEEEe
Confidence 9999999999754 5999999999998876 578889999999999999999999
Q ss_pred ccCCCCCCCCcccHHHHHHHHHHhCCcEEEEecCCCCCCCCCCCCCCCceEEeeecccCcceeeeEEeCCCeEEeeeeec
Q 007328 303 SIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVT 382 (608)
Q Consensus 303 SlG~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (608)
|||... ......+..+++++.++|+++|+||||++..... ++..++||+|++...+.
T Consensus 98 S~G~~~--~~~~~~~~~~~~~a~~~g~l~V~aagN~~~~~~~-Pa~~~~vi~V~~~~~~~-------------------- 154 (222)
T cd07492 98 SLGGPG--DRDFPLLKELLEYAYKAGGIIVAAAPNNNDIGTP-PASFPNVIGVKSDTADD-------------------- 154 (222)
T ss_pred CCCCCC--CCcCHHHHHHHHHHHHCCCEEEEECCCCCCCCCC-CccCCceEEEEecCCCC--------------------
Confidence 999852 2234567778888999999999999999865433 56678999998743211
Q ss_pred cCCCCcceeEEEcccCccCCcCCCCCCCCCCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCCCCCcc
Q 007328 383 PYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEY 462 (608)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 462 (608)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCcccEEEEeHhhHHHHHHHHhcCCCCeEEEEeCeEEeccCCCCcccccccCCCCCCCCCCCCCccccCCCcEeecc
Q 007328 463 SYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAW 542 (608)
Q Consensus 463 ~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fSs~Gp~~~~d~~~KPDI~APG~~I~sa~ 542 (608)
.. +.+++.. |++|||++|.++.
T Consensus 155 -----------------------------------------------~~---~~~~~~~--------~~~apg~~i~~~~ 176 (222)
T cd07492 155 -----------------------------------------------PK---SFWYIYV--------EFSADGVDIIAPA 176 (222)
T ss_pred -----------------------------------------------Cc---ccccCCc--------eEEeCCCCeEeec
Confidence 11 1124433 9999999999998
Q ss_pred cCCCCCCccccCccccceeeccchhhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCc
Q 007328 543 SEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTGN 601 (608)
Q Consensus 543 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~tA~ 601 (608)
+. +.|..++|||||||+|||++|||+|++|+|+++|||++|++||+
T Consensus 177 ~~-------------~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 177 PH-------------GRYLTVSGNSFAAPHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred CC-------------CCEEEeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 76 78999999999999999999999999999999999999999986
No 34
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=100.00 E-value=1.8e-41 Score=346.68 Aligned_cols=250 Identities=19% Similarity=0.150 Sum_probs=180.0
Q ss_pred cchhhhccccCCCceEEEEeeccccCCCCCCCCCCCCCCCCCCcceeecccccCCcCCCceeeeeEecccccccccCCCC
Q 007328 131 MGQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLN 210 (608)
Q Consensus 131 ~~~~~~~~~~tG~gV~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~ 210 (608)
++.++|..+++|+||+|+|||||||++||+|.++... ...++|..+.
T Consensus 27 ~~~~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~-------------------------~~~~~~~~~~-------- 73 (297)
T cd04059 27 NVTPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDP-------------------------EASYDFNDND-------- 73 (297)
T ss_pred ccHHHHhCCCCCcceEEEEEeCCcccCCHhHhhcccc-------------------------cccccccCCC--------
Confidence 3468999999999999999999999999999854110 0111122110
Q ss_pred CCCCCCCC--CCCCCCcccchhhhccCCCCCCCCCCCcCCccceeccCcceEEEEeeecCCCccCccCCCCCCHHHHHHH
Q 007328 211 ATEDDRSP--RDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAA 288 (608)
Q Consensus 211 ~~~~~~~~--~d~~gHGThVAgiiag~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~a 288 (608)
....+ .|..||||||||||+|... ......||||+|+|+.+|+++.. .....+..+
T Consensus 74 ---~~~~~~~~~~~gHGT~vAgiiag~~~---------~~~~~~GvAp~a~l~~~~~~~~~----------~~~~~~~~~ 131 (297)
T cd04059 74 ---PDPTPRYDDDNSHGTRCAGEIAAVGN---------NGICGVGVAPGAKLGGIRMLDGD----------VTDVVEAES 131 (297)
T ss_pred ---CCCCCccccccccCcceeeEEEeecC---------CCcccccccccceEeEEEecCCc----------cccHHHHHH
Confidence 01112 3788999999999999832 11123699999999999998754 223345555
Q ss_pred HHHHHHCCCcEEEeccCCCCCCC---CcccHHHHHHHHHHh-----CCcEEEEecCCCCCCCCC--C--CCCCCceEEee
Q 007328 289 IDDAIRDGVHVLSISIGTNQPFA---FNRDGIAIGALNAVK-----HNILVACSAGNSGPAPSS--L--SNLAPWLITVG 356 (608)
Q Consensus 289 i~~a~~~g~~VIn~SlG~~~~~~---~~~~~~~~~~~~a~~-----~Gi~vV~AAGN~g~~~~~--~--~~~~~~vitVg 356 (608)
+.++.+ .++|||||||...... .....+..+++++.. +|++||+||||+|..... . ....+++|+||
T Consensus 132 ~~~~~~-~~~Vin~S~g~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vg 210 (297)
T cd04059 132 LGLNPD-YIDIYSNSWGPDDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVS 210 (297)
T ss_pred HhcccC-CceEEECCCCCCCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEE
Confidence 555544 4699999999863322 112233444444443 699999999999973221 1 13457899998
Q ss_pred ecccCcceeeeEEeCCCeEEeeeeeccCCCCcceeEEEcccCccCCcCCCCCCCCCCCCCCCCcccceEEEEecCCCchh
Q 007328 357 AGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKL 436 (608)
Q Consensus 357 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~ 436 (608)
|++.
T Consensus 211 a~~~---------------------------------------------------------------------------- 214 (297)
T cd04059 211 AVTA---------------------------------------------------------------------------- 214 (297)
T ss_pred eeCC----------------------------------------------------------------------------
Confidence 7542
Q ss_pred hHHHHHHHcCceEEEEEeCCCCCCccccCCCcccEEEEeHhhHHHHHHHHhcCCCCeEEEEeCeEEeccCCCCccccccc
Q 007328 437 SKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTS 516 (608)
Q Consensus 437 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fSs 516 (608)
.+.++.||+
T Consensus 215 -----------------------------------------------------------------------~g~~~~~s~ 223 (297)
T cd04059 215 -----------------------------------------------------------------------NGVRASYSE 223 (297)
T ss_pred -----------------------------------------------------------------------CCCCcCCCC
Confidence 256778999
Q ss_pred CCCCCCCCCCCCCccccCCCc-------EeecccCCCCCCccccCccccceeeccchhhHHHHHHHHHHHHHHhCCCCCH
Q 007328 517 RGPNALDPYILKPDITAPGLN-------ILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSS 589 (608)
Q Consensus 517 ~Gp~~~~d~~~KPDI~APG~~-------I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~ 589 (608)
+|+.. +++|||.. |+++.... ....|..++|||||||+|||++|||+|++|++++
T Consensus 224 ~g~~~--------~~~a~g~~~~~~~~~i~~~~~~~----------~~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~ 285 (297)
T cd04059 224 VGSSV--------LASAPSGGSGNPEASIVTTDLGG----------NCNCTSSHNGTSAAAPLAAGVIALMLEANPNLTW 285 (297)
T ss_pred CCCcE--------EEEecCCCCCCCCCceEeCCCCC----------CCCcccccCCcchhhhhhHhHHHHhhccCCCCCH
Confidence 99988 89999988 66555431 0156788999999999999999999999999999
Q ss_pred HHHHHHHHhcCc
Q 007328 590 AAIRSALMTTGN 601 (608)
Q Consensus 590 ~~ik~~L~~tA~ 601 (608)
.|||++|++||+
T Consensus 286 ~~v~~~L~~TA~ 297 (297)
T cd04059 286 RDVQHILALTAR 297 (297)
T ss_pred HHHHHHHHHhcC
Confidence 999999999995
No 35
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=100.00 E-value=4.2e-40 Score=331.53 Aligned_cols=245 Identities=31% Similarity=0.358 Sum_probs=186.8
Q ss_pred CCCceEEEEeeccccCCCCCCCCCCCCCCCCCCcceeecccccCCcCCCceeeeeEecccccccccCCCCCCCCCCCCCC
Q 007328 141 YGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRD 220 (608)
Q Consensus 141 tG~gV~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~d 220 (608)
||+||+|+|||+||+.+||+|.+..... ..+..... .......|
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~---------------------------~~~~~~~~---------~~~~~~~~ 44 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEA---------------------------SYYVAVND---------AGYASNGD 44 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCccccc---------------------------cccccccc---------ccCCCCCC
Confidence 6999999999999999999998652110 00000000 00234557
Q ss_pred CCCCcccchhhhccCCCCCCCCCCCcCCccceeccCcceEEEEeeecCCCccCccCCCCCCHHHHHHHHHHHHHCCCcEE
Q 007328 221 MDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVL 300 (608)
Q Consensus 221 ~~gHGThVAgiiag~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~VI 300 (608)
..+|||||||||+|... . ..+.|+||+|+|+.+|+++..+. ......+.++++++.+.+++||
T Consensus 45 ~~~HGT~vagiiag~~~---------~-~~~~GiAp~a~i~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~Vi 107 (267)
T cd04848 45 GDSHGTHVAGVIAAARD---------G-GGMHGVAPDATLYSARASASAGS-------TFSDADIAAAYDFLAASGVRII 107 (267)
T ss_pred CCChHHHHHHHHhcCcC---------C-CCcccCCcCCEEEEEeccCCCCc-------ccchHHHHHHHHHHHhCCCeEE
Confidence 88999999999999832 1 33579999999999999986530 2566788999999999999999
Q ss_pred EeccCCCCCCC-----------CcccHHHHHHHHHHhCCcEEEEecCCCCCCCCCCC---------CCCCceEEeeeccc
Q 007328 301 SISIGTNQPFA-----------FNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLS---------NLAPWLITVGAGSL 360 (608)
Q Consensus 301 n~SlG~~~~~~-----------~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~~---------~~~~~vitVga~~~ 360 (608)
|||||...... .....+...++.+.++|++||+||||++....... ...+++|+||+++.
T Consensus 108 n~S~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~ 187 (267)
T cd04848 108 NNSWGGNPAIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDP 187 (267)
T ss_pred EccCCCCCcccccccchhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecC
Confidence 99999974322 24566777788899999999999999986543322 23578899988643
Q ss_pred CcceeeeEEeCCCeEEeeeeeccCCCCcceeEEEcccCccCCcCCCCCCCCCCCCCCCCcccceEEEEecCCCchhhHHH
Q 007328 361 DRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGM 440 (608)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~ 440 (608)
+
T Consensus 188 ~------------------------------------------------------------------------------- 188 (267)
T cd04848 188 N------------------------------------------------------------------------------- 188 (267)
T ss_pred C-------------------------------------------------------------------------------
Confidence 2
Q ss_pred HHHHcCceEEEEEeCCCCCCccccCCCcccEEEEeHhhHHHHHHHHhcCCCCeEEEEeCeEEeccCCCCcccc--cccCC
Q 007328 441 EVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMAN--FTSRG 518 (608)
Q Consensus 441 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--fSs~G 518 (608)
+.... ||++|
T Consensus 189 --------------------------------------------------------------------~~~~~~~~s~~~ 200 (267)
T cd04848 189 --------------------------------------------------------------------GTIASYSYSNRC 200 (267)
T ss_pred --------------------------------------------------------------------CCcccccccccc
Confidence 22333 48888
Q ss_pred CCCCCCCCCCCccccCCCcEeecccCCCCCCccccCccccceeeccchhhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHh
Q 007328 519 PNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMT 598 (608)
Q Consensus 519 p~~~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~ 598 (608)
+.. ..++++|||.+|.++.+.. ...|..++|||||||+|||++|||+|++|.++++|||++|++
T Consensus 201 ~~~-----~~~~~~apG~~i~~~~~~~-----------~~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~ 264 (267)
T cd04848 201 GVA-----ANWCLAAPGENIYSTDPDG-----------GNGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLT 264 (267)
T ss_pred hhh-----hhheeecCcCceeecccCC-----------CCcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHh
Confidence 643 2347999999999988731 167889999999999999999999999999999999999999
Q ss_pred cCc
Q 007328 599 TGN 601 (608)
Q Consensus 599 tA~ 601 (608)
||+
T Consensus 265 tA~ 267 (267)
T cd04848 265 TAT 267 (267)
T ss_pred hcC
Confidence 995
No 36
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=100.00 E-value=1.8e-39 Score=329.60 Aligned_cols=252 Identities=34% Similarity=0.458 Sum_probs=193.7
Q ss_pred EEEEeeccccCCCCCCC-CCCCCCCCCCCcceeecccccCCcCCCceeeeeEecccccccccCCCCCCCCCCCCCCCCCC
Q 007328 146 IVGLVDNGVWPESKSFS-DEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGH 224 (608)
Q Consensus 146 ~VaViDtGid~~Hp~f~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~gH 224 (608)
+|||||||||++||+|. ++- ...++.+.+.|..+. .......|..+|
T Consensus 1 ~V~viDtGid~~h~~~~~~~~----------------------~~~~~~~~~~~~~~~----------~~~~~~~~~~~H 48 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGNF----------------------IWSKVPGGYNFVDGN----------PNPSPSDDDNGH 48 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTTE----------------------EEEEEEEEEETTTTB----------STTTSSSTSSSH
T ss_pred CEEEEcCCcCCCChhHccCCc----------------------ccccccceeeccCCC----------CCcCccccCCCc
Confidence 69999999999999998 330 112233344444331 113456678899
Q ss_pred cccchhhhccCCCCCCCCCCCcCCccceeccCcceEEEEeeecCCCccCccCCCCCCHHHHHHHHHHHH-HCCCcEEEec
Q 007328 225 GTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI-RDGVHVLSIS 303 (608)
Q Consensus 225 GThVAgiiag~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~-~~g~~VIn~S 303 (608)
||||||||+|.. . . ......|+||+|+|+.+|+++..+ .....+++++++++ +.+++|||||
T Consensus 49 GT~va~ii~~~~-~-~------~~~~~~Gva~~a~l~~~~i~~~~~---------~~~~~~~~ai~~~~~~~~~~Vin~S 111 (282)
T PF00082_consen 49 GTHVAGIIAGNG-G-N------NGPGINGVAPNAKLYSYKIFDNSG---------GTSSDLIEAIEYAVKNDGVDVINLS 111 (282)
T ss_dssp HHHHHHHHHHTT-S-S------SSSSETCSSTTSEEEEEECSSTTS---------EEHHHHHHHHHHHHHHTTSSEEEEC
T ss_pred cchhhhhccccc-c-c------cccccccccccccccccccccccc---------cccccccchhhhhhhccCCcccccc
Confidence 999999999984 1 1 112246999999999999977653 67788999999999 8999999999
Q ss_pred cCCCC--CCCCcccHHHHHHHHHHhCCcEEEEecCCCCCCCCC---CCCCCCceEEeeecccCcceeeeEEeCCCeEEee
Q 007328 304 IGTNQ--PFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSS---LSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIG 378 (608)
Q Consensus 304 lG~~~--~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~---~~~~~~~vitVga~~~~~~~~~~~~~~~~~~~~~ 378 (608)
||... ........+..+++.+.++|+++|+||||+|..... .+...+++|+||++..
T Consensus 112 ~G~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~------------------ 173 (282)
T PF00082_consen 112 FGSNSGPPDPSYSDILEEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDN------------------ 173 (282)
T ss_dssp EEBEESSSHSHHHHHHHHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEET------------------
T ss_pred ccccccccccccccccccccccccccCcceeecccccccccccccccccccccccccccccc------------------
Confidence 98831 222334456667778999999999999999876543 3444688899987531
Q ss_pred eeeccCCCCcceeEEEcccCccCCcCCCCCCCCCCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCCC
Q 007328 379 KTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPAN 458 (608)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~ 458 (608)
T Consensus 174 -------------------------------------------------------------------------------- 173 (282)
T PF00082_consen 174 -------------------------------------------------------------------------------- 173 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccCCCcccEEEEeHhhHHHHHHHHhcCCCCeEEEEeCeEEeccCCCCcccccccCCCCCCCCCCCCCccccCCCcE
Q 007328 459 GNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNI 538 (608)
Q Consensus 459 ~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fSs~Gp~~~~d~~~KPDI~APG~~I 538 (608)
.+.++.||++|+... ++++||||+|||.+|
T Consensus 174 -------------------------------------------------~~~~~~~s~~g~~~~-~~~~~~di~a~G~~i 203 (282)
T PF00082_consen 174 -------------------------------------------------NGQPASYSNYGGPSD-DGRIKPDIAAPGGNI 203 (282)
T ss_dssp -------------------------------------------------TSSBSTTSSBSTTET-TCTTCEEEEEECSSE
T ss_pred -------------------------------------------------ccccccccccccccc-ccccccccccccccc
Confidence 136689999976653 699999999999999
Q ss_pred eecccCCCCCCccccCccccceeeccchhhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCc
Q 007328 539 LAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTGNNNC 604 (608)
Q Consensus 539 ~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~tA~~~~ 604 (608)
.+.++.... ..|..++|||||||+|||++|||+|++|++++.+||++|++||+++.
T Consensus 204 ~~~~~~~~~----------~~~~~~~GTS~Aap~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~ 259 (282)
T PF00082_consen 204 LSAVPGSDR----------GSYTSFSGTSFAAPVVAGAAALLLSKYPNLTPAEIKALLINTADDLG 259 (282)
T ss_dssp EEEETTTES----------EEEEEEESHHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESS
T ss_pred ccccccccc----------ccccccCcCCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccC
Confidence 888876210 35788999999999999999999999999999999999999999886
No 37
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-37 Score=314.45 Aligned_cols=348 Identities=24% Similarity=0.313 Sum_probs=254.4
Q ss_pred CceEEEEeCCCCCCCccchhhhHhHHHHHHHhhcChhhhh------cceEEEecceeeeEEEEcCH-----HHHHHhhCC
Q 007328 23 KQVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEAR------ASHLYSYKHSINGFSAVLTP-----DEAARLSEL 91 (608)
Q Consensus 23 ~~~yiV~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~ 91 (608)
+.+|||.|++.-.. ..++..+.+.+....... ...-.+|...|..+-++-.. -.+++|..+
T Consensus 49 e~EyIv~F~~y~~A--------k~r~syi~skl~gS~VtnWriipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ierLe~h 120 (1033)
T KOG4266|consen 49 ESEYIVRFKQYKPA--------KDRRSYIESKLRGSGVTNWRIIPRINPATKYPSDFGVLWIEESGKEAVVGEIERLEMH 120 (1033)
T ss_pred cceeEEEecccccc--------hHHHHHHHHHhhcCCCCceeEeeccCccccCCCccceEEEeccCccchhheeeehhcC
Confidence 67899999988763 445556666554222111 11234555556666655432 247899999
Q ss_pred CCeEEEEeCCCCccccccC------------CCCccc-ccchhhcc-------ccCc---------cc--cchhhhcccc
Q 007328 92 EEVVSVYPSHPEKYSLQTT------------RSWEFV-GLDEVAKQ-------NWNH---------FN--MGQDLLSKAR 140 (608)
Q Consensus 92 p~V~~v~~~~~~~~~~~~~------------~~~~~~-~~~~~~~~-------~~~~---------~~--~~~~~~~~~~ 140 (608)
|.|+.+.|.+ .+..... ....++ +....... ++.. .+ .++.+|..|+
T Consensus 121 p~vk~v~pqr--~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad~LWk~Gy 198 (1033)
T KOG4266|consen 121 PDVKVVFPQR--RVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGADHLWKKGY 198 (1033)
T ss_pred CCceeecchh--hhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchhhHHhccc
Confidence 9999999888 4422100 000000 00000000 0000 01 5678999999
Q ss_pred CCCceEEEEeeccccCCCCCCCCCCCCCCCCCCcceeecccccCCcCCCceeeeeEecccccccccCCCCCCCCCCCCCC
Q 007328 141 YGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRD 220 (608)
Q Consensus 141 tG~gV~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~d 220 (608)
||++|+|||.|||+.-+||.|+.- .--.++++ ...-.|
T Consensus 199 TGa~VkvAiFDTGl~~~HPHFrnv----------------------------KERTNWTN--------------E~tLdD 236 (1033)
T KOG4266|consen 199 TGAKVKVAIFDTGLRADHPHFRNV----------------------------KERTNWTN--------------EDTLDD 236 (1033)
T ss_pred cCCceEEEEeecccccCCccccch----------------------------hhhcCCcC--------------cccccc
Confidence 999999999999999999999732 00111111 123456
Q ss_pred CCCCcccchhhhccCCCCCCCCCCCcCCccceeccCcceEEEEeeecCCCccCccCCCCCCHHHHHHHHHHHHHCCCcEE
Q 007328 221 MDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVL 300 (608)
Q Consensus 221 ~~gHGThVAgiiag~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~VI 300 (608)
.-||||.|||+|||.. . ..|.||+++|+++|||.+.- -.+++++++|+.||+...++|+
T Consensus 237 ~lgHGTFVAGvia~~~-----e--------c~gfa~d~e~~~frvft~~q--------VSYTSWFLDAFNYAI~~kidvL 295 (1033)
T KOG4266|consen 237 NLGHGTFVAGVIAGRN-----E--------CLGFASDTEIYAFRVFTDAQ--------VSYTSWFLDAFNYAIATKIDVL 295 (1033)
T ss_pred CcccceeEeeeeccch-----h--------hcccCCccceeEEEeeccce--------eehhhHHHHHHHHHHhhhcceE
Confidence 7899999999999872 1 26999999999999998876 5888999999999999999999
Q ss_pred EeccCCCCCCCCcccHHHHHHHHHHhCCcEEEEecCCCCCCCCCCCCCCC--ceEEeeecccCcceeeeEEeCCCeEEee
Q 007328 301 SISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAP--WLITVGAGSLDRDFVGPVVLGTGMEIIG 378 (608)
Q Consensus 301 n~SlG~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~--~vitVga~~~~~~~~~~~~~~~~~~~~~ 378 (608)
|+|.|++ .+.+.++-.-+-++...++++|.|+||+|+-.++..++++ .||-||.
T Consensus 296 NLSIGGP---DfmD~PFVeKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGG--------------------- 351 (1033)
T KOG4266|consen 296 NLSIGGP---DFMDLPFVEKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGG--------------------- 351 (1033)
T ss_pred eeccCCc---ccccchHHHHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeecc---------------------
Confidence 9999997 6778888777778889999999999999999888888764 4555553
Q ss_pred eeeccCCCCcceeEEEcccCccCCcCCCCCCCCCCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCCC
Q 007328 379 KTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPAN 458 (608)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~ 458 (608)
T Consensus 352 -------------------------------------------------------------------------------- 351 (1033)
T KOG4266|consen 352 -------------------------------------------------------------------------------- 351 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccCCCcccEEEEeHhhHHHHHHHHhcCCCCeEEEEeCeEEeccCCCCcccccccCCCCCC----CCCCCCCccccC
Q 007328 459 GNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNAL----DPYILKPDITAP 534 (608)
Q Consensus 459 ~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fSs~Gp~~~----~d~~~KPDI~AP 534 (608)
.+..+.++.|||||-+.. .=||+||||++-
T Consensus 352 ----------------------------------------------IdfdD~IA~FSSRGMtTWELP~GYGRmkpDiVtY 385 (1033)
T KOG4266|consen 352 ----------------------------------------------IDFDDHIASFSSRGMTTWELPHGYGRMKPDIVTY 385 (1033)
T ss_pred ----------------------------------------------ccccchhhhhccCCcceeecCCcccccCCceEee
Confidence 222478999999995431 128999999999
Q ss_pred CCcEeecccCCCCCCccccCccccceeeccchhhHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHhcCcCCccc
Q 007328 535 GLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKA----IHPDWSSAAIRSALMTTGNNNCCV 606 (608)
Q Consensus 535 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~lt~~~ik~~L~~tA~~~~~~ 606 (608)
|..|...... .+...+||||.|+|+|||+++||.+ +.--+.|+.+|++|+.+|.+||-+
T Consensus 386 G~~v~GS~v~-------------~GCr~LSGTSVaSPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg~ 448 (1033)
T KOG4266|consen 386 GRDVMGSKVS-------------TGCRSLSGTSVASPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPGP 448 (1033)
T ss_pred ccccccCccc-------------ccchhccCCcccchhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCCC
Confidence 9999876655 6778899999999999999999976 335579999999999999999854
No 38
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3e-35 Score=288.63 Aligned_cols=194 Identities=25% Similarity=0.245 Sum_probs=143.4
Q ss_pred CCCCCCCCcccchhhhccCCCCCCCCCCCcCCccceeccCcceEEEEeeecCCCccCccCCCCCCHHHHHHHHHHH--HH
Q 007328 217 SPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDA--IR 294 (608)
Q Consensus 217 ~~~d~~gHGThVAgiiag~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a--~~ 294 (608)
...|.++|||||||||||. .|++|+++|+..++... ..+.+..+++|+ .+
T Consensus 32 ~~~~~~~HGThVAgiiag~----------------~~~~p~a~~~~~~~~~~------------~~~~~~~~i~~~~~~~ 83 (247)
T cd07488 32 RNNTFDDHATLVASIMGGR----------------DGGLPAVNLYSSAFGIK------------SNNGQWQECLEAQQNG 83 (247)
T ss_pred CCCCCCCHHHHHHHHHHhc----------------cCCCCccceehhhhCCC------------CCCccHHHHHHHHHhc
Confidence 3557899999999999987 36679999987655221 223355677777 56
Q ss_pred CCCcEEEeccCCCCCCC-----CcccHHHHHHHHHHhC-CcEEEEecCCCCCCCC-----CCCCCCCceEEeeecccCcc
Q 007328 295 DGVHVLSISIGTNQPFA-----FNRDGIAIGALNAVKH-NILVACSAGNSGPAPS-----SLSNLAPWLITVGAGSLDRD 363 (608)
Q Consensus 295 ~g~~VIn~SlG~~~~~~-----~~~~~~~~~~~~a~~~-Gi~vV~AAGN~g~~~~-----~~~~~~~~vitVga~~~~~~ 363 (608)
.+++|||||||...... ...+.+..+++.+.++ |+++|+||||+|.... ..+..++++|+|||++....
T Consensus 84 ~gv~VINmS~G~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~ 163 (247)
T cd07488 84 NNVKIINHSYGEGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGD 163 (247)
T ss_pred CCceEEEeCCccCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCC
Confidence 89999999999864332 2334677778887766 9999999999997532 22334678999998653211
Q ss_pred eeeeEEeCCCeEEeeeeeccCCCCcceeEEEcccCccCCcCCCCCCCCCCCCCCCCcccceEEEEecCCCchhhHHHHHH
Q 007328 364 FVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVK 443 (608)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~ 443 (608)
T Consensus 164 -------------------------------------------------------------------------------- 163 (247)
T cd07488 164 -------------------------------------------------------------------------------- 163 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HcCceEEEEEeCCCCCCccccCCCcccEEEEeHhhHHHHHHHHhcCCCCeEEEEeCeEEeccCCCCcccccccC--CCCC
Q 007328 444 RAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSR--GPNA 521 (608)
Q Consensus 444 ~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fSs~--Gp~~ 521 (608)
....+.||++ +|+.
T Consensus 164 ----------------------------------------------------------------~~~~s~~sn~~~~~~~ 179 (247)
T cd07488 164 ----------------------------------------------------------------RFFASDVSNAGSEINS 179 (247)
T ss_pred ----------------------------------------------------------------cceecccccccCCCCC
Confidence 0123455665 4544
Q ss_pred CCCCCCCCccccCCCcEeecccCCCCCCccccCccccceeeccchhhHHHHHHHHHHHHHHhCCCCCHH------HHHHH
Q 007328 522 LDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSA------AIRSA 595 (608)
Q Consensus 522 ~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~------~ik~~ 595 (608)
+++.||||+|||++|++ +. +.|..++|||||||||||++|||+|++|++.+. .+|.+
T Consensus 180 --~~~~~~di~APG~~i~s--~~-------------~~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~ 242 (247)
T cd07488 180 --YGRRKVLIVAPGSNYNL--PD-------------GKDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRAL 242 (247)
T ss_pred --CCCceeEEEEeeeeEEC--CC-------------CceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHH
Confidence 68999999999999998 33 678899999999999999999999999888744 45666
Q ss_pred HHhc
Q 007328 596 LMTT 599 (608)
Q Consensus 596 L~~t 599 (608)
|.+|
T Consensus 243 ~~~~ 246 (247)
T cd07488 243 VSSS 246 (247)
T ss_pred Hhcc
Confidence 6554
No 39
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=100.00 E-value=2.3e-32 Score=270.07 Aligned_cols=197 Identities=35% Similarity=0.450 Sum_probs=158.4
Q ss_pred CCCCCCCCcccchhhhccCCCCCCCCCCCcCCccceeccCcceEEEEeeecCCCccCccCCCCCCHHHHHHHHHHHH-HC
Q 007328 217 SPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI-RD 295 (608)
Q Consensus 217 ~~~d~~gHGThVAgiiag~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~-~~ 295 (608)
...+..+||||||++|++.... ....|+||+++|+.+|+..... ......+++++++++ +.
T Consensus 39 ~~~~~~~HGt~va~~i~~~~~~----------~~~~g~a~~a~i~~~~~~~~~~--------~~~~~~~~~ai~~~~~~~ 100 (241)
T cd00306 39 DPDDGNGHGTHVAGIIAASANN----------GGGVGVAPGAKLIPVKVLDGDG--------SGSSSDIAAAIDYAAADQ 100 (241)
T ss_pred CCCCCCCcHHHHHHHHhcCCCC----------CCCEEeCCCCEEEEEEEecCCC--------CcCHHHHHHHHHHHHhcc
Confidence 4556789999999999988321 1116999999999999988765 467888999999999 89
Q ss_pred CCcEEEeccCCCCCCCCcccHHHHHHHHHHhC-CcEEEEecCCCCCCCC---CCCCCCCceEEeeecccCcceeeeEEeC
Q 007328 296 GVHVLSISIGTNQPFAFNRDGIAIGALNAVKH-NILVACSAGNSGPAPS---SLSNLAPWLITVGAGSLDRDFVGPVVLG 371 (608)
Q Consensus 296 g~~VIn~SlG~~~~~~~~~~~~~~~~~~a~~~-Gi~vV~AAGN~g~~~~---~~~~~~~~vitVga~~~~~~~~~~~~~~ 371 (608)
+++|||||||..... ....+...++++.++ |+++|+|+||.+.... ..+...+++|+||+++...
T Consensus 101 ~~~iin~S~g~~~~~--~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~--------- 169 (241)
T cd00306 101 GADVINLSLGGPGSP--PSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDG--------- 169 (241)
T ss_pred CCCEEEeCCCCCCCC--CCHHHHHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCC---------
Confidence 999999999996322 456677777888888 9999999999997765 4666789999999864321
Q ss_pred CCeEEeeeeeccCCCCcceeEEEcccCccCCcCCCCCCCCCCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEE
Q 007328 372 TGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLI 451 (608)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~~~~ 451 (608)
T Consensus 170 -------------------------------------------------------------------------------- 169 (241)
T cd00306 170 -------------------------------------------------------------------------------- 169 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeCCCCCCccccCCCcccEEEEeHhhHHHHHHHHhcCCCCeEEEEeCeEEeccCCCCccc-ccccCCCCCCCCCCCCCc
Q 007328 452 LGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMA-NFTSRGPNALDPYILKPD 530 (608)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~fSs~Gp~~~~d~~~KPD 530 (608)
... .++++|+ |||
T Consensus 170 ----------------------------------------------------------~~~~~~~~~~~--------~~~ 183 (241)
T cd00306 170 ----------------------------------------------------------TPASPSSNGGA--------GVD 183 (241)
T ss_pred ----------------------------------------------------------CccCCcCCCCC--------Cce
Confidence 111 3444444 559
Q ss_pred cccCCCcEeecccCCCCCCccccCccccceeeccchhhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 007328 531 ITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTT 599 (608)
Q Consensus 531 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~t 599 (608)
+.|||.++.+.... ....+..++|||||||+|||++||++|++|++++.++|++|+.|
T Consensus 184 ~~apg~~~~~~~~~-----------~~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 184 IAAPGGDILSSPTT-----------GGGGYATLSGTSMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred EEeCcCCccCcccC-----------CCCCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 99999999875111 12789999999999999999999999999999999999999875
No 40
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2e-30 Score=275.41 Aligned_cols=225 Identities=24% Similarity=0.246 Sum_probs=170.8
Q ss_pred CCCcccchhhhccCCCCCCCCCCCcCCccceeccCcceEEEEeeecCCCccCccCCCCCCHHHHHHHHHHHHHCCCcEEE
Q 007328 222 DGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLS 301 (608)
Q Consensus 222 ~gHGThVAgiiag~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn 301 (608)
.-||||||||++|+..+.. ...||||+|+|+++++.+..-. .--+...+.+|+..++++++||||
T Consensus 310 g~HGTHVAgIa~anhpe~p---------~~NGvAPgaqIvSl~IGD~RLg------sMETgtaltRA~~~v~e~~vDiIN 374 (1304)
T KOG1114|consen 310 GPHGTHVAGIAAANHPETP---------ELNGVAPGAQIVSLKIGDGRLG------SMETGTALTRAMIEVIEHNVDIIN 374 (1304)
T ss_pred CCCcceehhhhccCCCCCc---------cccCCCCCCEEEEEEecCcccc------ccccchHHHHHHHHHHHhcCCEEE
Confidence 4599999999999965432 2359999999999999775430 012234589999999999999999
Q ss_pred eccCCCCCCCCcccHHHHHHHHHHhCCcEEEEecCCCCCCCCCCCCC---CCceEEeeecccCcceeeeEEeCCCeEEee
Q 007328 302 ISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNL---APWLITVGAGSLDRDFVGPVVLGTGMEIIG 378 (608)
Q Consensus 302 ~SlG~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~~~~---~~~vitVga~~~~~~~~~~~~~~~~~~~~~ 378 (608)
||+|-....+.....++.+-+.+.+.|+++|+||||.|+...+++++ ...||.|||..........
T Consensus 375 mSyGE~a~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm~a~----------- 443 (1304)
T KOG1114|consen 375 MSYGEDAHLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMMQAE----------- 443 (1304)
T ss_pred eccCccCCCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHHHhh-----------
Confidence 99998755555666666665666688999999999999998888764 3589999984322111000
Q ss_pred eeeccCCCCcceeEEEcccCccCCcCCCCCCCCCCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCCC
Q 007328 379 KTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPAN 458 (608)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~ 458 (608)
|.+
T Consensus 444 -----------y~~------------------------------------------------------------------ 446 (1304)
T KOG1114|consen 444 -----------YSV------------------------------------------------------------------ 446 (1304)
T ss_pred -----------hhh------------------------------------------------------------------
Confidence 000
Q ss_pred CCccccCCCcccEEEEeHhhHHHHHHHHhcCCCCeEEEEeCeEEeccCCCCcccccccCCCCCCCCCCCCCccccCCCcE
Q 007328 459 GNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNI 538 (608)
Q Consensus 459 ~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fSs~Gp~~~~d~~~KPDI~APG~~I 538 (608)
...-......+|||||+. ||.+--.|.|||+.|
T Consensus 447 ---------------------------------------------~e~vp~~~YtWsSRgP~~--DG~lGVsi~APggAi 479 (1304)
T KOG1114|consen 447 ---------------------------------------------REPVPSNPYTWSSRGPCL--DGDLGVSISAPGGAI 479 (1304)
T ss_pred ---------------------------------------------hccCCCCccccccCCCCc--CCCcceEEecCCccc
Confidence 001124577899999999 799999999999999
Q ss_pred eecccCCCCCCccccCccccceeeccchhhHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHhcCcCCcccc
Q 007328 539 LAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKA----IHPDWSSAAIRSALMTTGNNNCCVS 607 (608)
Q Consensus 539 ~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~lt~~~ik~~L~~tA~~~~~~~ 607 (608)
.|.-.-.- ..-..|+|||||+|+++|.+|||++ .+-.+||.-||.+|++||++++.++
T Consensus 480 AsVP~~tl-----------q~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~id 541 (1304)
T KOG1114|consen 480 ASVPQYTL-----------QNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGDID 541 (1304)
T ss_pred cCCchhhh-----------hhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCccc
Confidence 76421110 4567899999999999999999965 5678999999999999999998764
No 41
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=6.2e-25 Score=240.96 Aligned_cols=249 Identities=29% Similarity=0.431 Sum_probs=187.5
Q ss_pred hhhhcc--ccCCCceEEEEeeccccCCCCCCCCCCCCCCCCCCcceeecccccCCcCCCceeeeeEecccccccccCCCC
Q 007328 133 QDLLSK--ARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLN 210 (608)
Q Consensus 133 ~~~~~~--~~tG~gV~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~ 210 (608)
...|.. +.+|+||+|+|||+||+..||+|.++.. ...+|...
T Consensus 130 ~~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~---------------------------~~~~~~~~--------- 173 (508)
T COG1404 130 GALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAV---------------------------AGGDFVDG--------- 173 (508)
T ss_pred ccccccccCCCCCCeEEEEeccCCCCCChhhhcccc---------------------------cccccccC---------
Confidence 366776 8999999999999999999999986521 00122211
Q ss_pred CCCCCC-CCCCCCCCcccchhhhccCCCCCCCCCCCcCCccceeccCcceEEEEeeecCC-CccCccCCCCCCHHHHHHH
Q 007328 211 ATEDDR-SPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWAT-PKASKAAGNTCFEADMLAA 288 (608)
Q Consensus 211 ~~~~~~-~~~d~~gHGThVAgiiag~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~-~~~~~~~~~~~~~~~i~~a 288 (608)
... ...|..+|||||+|++++.... ......|+||+++++.++++... + .....+++.+
T Consensus 174 ---~~~~~~~d~~~hGt~vag~ia~~~~~--------~~~~~~g~a~~~~~~~~~~~~~~~g--------~~~~~~~~~~ 234 (508)
T COG1404 174 ---DPEPPFLDDNGHGTHVAGTIAAVIFD--------NGAGVAGVAPGAKLLLVKVLGSGGG--------SGELSDVAEG 234 (508)
T ss_pred ---CCCCCCCCCCCCcceeeeeeeeeccc--------CCCccccccCCCcEEEEEeccCCCC--------cccHHHHHHH
Confidence 011 2578899999999999984211 11124699999999999999876 5 6788888999
Q ss_pred HHHHHHCC--CcEEEeccCCCCCCCCcccHHHHHHHHHHhCC-cEEEEecCCCCCCCCC----CCCCC--CceEEeeecc
Q 007328 289 IDDAIRDG--VHVLSISIGTNQPFAFNRDGIAIGALNAVKHN-ILVACSAGNSGPAPSS----LSNLA--PWLITVGAGS 359 (608)
Q Consensus 289 i~~a~~~g--~~VIn~SlG~~~~~~~~~~~~~~~~~~a~~~G-i~vV~AAGN~g~~~~~----~~~~~--~~vitVga~~ 359 (608)
++++.+.+ +++||||+|.. ........+..++..+...| +++|+++||.+..... .+... +.+++|++..
T Consensus 235 i~~~~~~~~~~~~in~s~g~~-~~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~ 313 (508)
T COG1404 235 IEGAANLGGPADVINLSLGGS-LSDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALD 313 (508)
T ss_pred HHHHHhcCCCCcEEEecCCCC-ccccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCC
Confidence 99999999 99999999985 23344455666777777777 9999999999966421 11212 3566666532
Q ss_pred cCcceeeeEEeCCCeEEeeeeeccCCCCcceeEEEcccCccCCcCCCCCCCCCCCCCCCCcccceEEEEecCCCchhhHH
Q 007328 360 LDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKG 439 (608)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~ 439 (608)
.
T Consensus 314 ~------------------------------------------------------------------------------- 314 (508)
T COG1404 314 L------------------------------------------------------------------------------- 314 (508)
T ss_pred C-------------------------------------------------------------------------------
Confidence 1
Q ss_pred HHHHHcCceEEEEEeCCCCCCccccCCCcccEEEEeHhhHHHHHHHHhcCCCCeEEEEeCeEEeccCCCCcccccccCCC
Q 007328 440 MEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGP 519 (608)
Q Consensus 440 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fSs~Gp 519 (608)
.+.+..||++|+
T Consensus 315 --------------------------------------------------------------------~~~~~~~s~~g~ 326 (508)
T COG1404 315 --------------------------------------------------------------------SDTVASFSNDGS 326 (508)
T ss_pred --------------------------------------------------------------------CCccccccccCC
Confidence 256778999997
Q ss_pred CCCCCCCCCCccccCCCcEee-----cccCCCCCCccccCccccceeeccchhhHHHHHHHHHHHHHHhCC-CCCHHHHH
Q 007328 520 NALDPYILKPDITAPGLNILA-----AWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHP-DWSSAAIR 593 (608)
Q Consensus 520 ~~~~d~~~KPDI~APG~~I~s-----a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p-~lt~~~ik 593 (608)
.. ..+++|||.+|.+ .+++.. ..|..++||||++|+|+|++||+++.+| .+++.+++
T Consensus 327 ~~------~~~~~apg~~i~~~~~~~~~~~~~-----------~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~ 389 (508)
T COG1404 327 PT------GVDIAAPGVNILSLSAVNTLPGDG-----------ADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVR 389 (508)
T ss_pred CC------CcceeCCCccccccccceeeeCCc-----------cceEeeccccccccHHHHHHHHHHccCcccCCHHHHH
Confidence 41 1199999999988 444410 2499999999999999999999999999 89999999
Q ss_pred HHHHhcCc
Q 007328 594 SALMTTGN 601 (608)
Q Consensus 594 ~~L~~tA~ 601 (608)
..+..++.
T Consensus 390 ~~~~~~~~ 397 (508)
T COG1404 390 NLIVTTAG 397 (508)
T ss_pred HHHhhccc
Confidence 99988886
No 42
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=5.7e-23 Score=199.28 Aligned_cols=157 Identities=16% Similarity=0.161 Sum_probs=108.0
Q ss_pred cchhhhccccCCCceEEEEeeccccCCCCCCCCCCCCCCCCCCcceeecccccCCcCCCceeeeeEecccccccccCCCC
Q 007328 131 MGQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLN 210 (608)
Q Consensus 131 ~~~~~~~~~~tG~gV~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~ 210 (608)
++.++|..|+|||+|+++|+|.||||.|||++.+ | .--.+++|...
T Consensus 149 nv~~awa~g~tgknvttaimddgvdymhpdlk~n------------------y-------naeasydfssn--------- 194 (629)
T KOG3526|consen 149 NVAEAWALGYTGKNVTTAIMDDGVDYMHPDLKSN------------------Y-------NAEASYDFSSN--------- 194 (629)
T ss_pred cHHHHHhhcccCCCceEEeecCCchhcCcchhcc------------------c-------CceeecccccC---------
Confidence 5679999999999999999999999999999743 1 11122334322
Q ss_pred CCCCCCCCCC--CCCCcccchhhhccCCCCCCCCCCCcCCccceeccCcceEEEEeeecCCCccCccCCCCCCHHHHHHH
Q 007328 211 ATEDDRSPRD--MDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAA 288 (608)
Q Consensus 211 ~~~~~~~~~d--~~gHGThVAgiiag~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~a 288 (608)
.+.+++...| .+.|||.|||-+++...++. . | .|||++.++..+|+++. -+..++++|
T Consensus 195 dpfpyprytddwfnshgtrcagev~aardngi--c-g------vgvaydskvagirmldq-----------pymtdliea 254 (629)
T KOG3526|consen 195 DPFPYPRYTDDWFNSHGTRCAGEVVAARDNGI--C-G------VGVAYDSKVAGIRMLDQ-----------PYMTDLIEA 254 (629)
T ss_pred CCCCCCcccchhhhccCccccceeeeeccCCc--e-e------eeeeeccccceeeecCC-----------chhhhhhhh
Confidence 1123333444 57899999999988754332 2 2 39999999999999984 556666665
Q ss_pred HHHHHH-CCCcEEEeccCCCCCCCCcccHHHH---HHHHHHh-----CCcEEEEecCCCCCC
Q 007328 289 IDDAIR-DGVHVLSISIGTNQPFAFNRDGIAI---GALNAVK-----HNILVACSAGNSGPA 341 (608)
Q Consensus 289 i~~a~~-~g~~VIn~SlG~~~~~~~~~~~~~~---~~~~a~~-----~Gi~vV~AAGN~g~~ 341 (608)
-...-+ ..++|.+-|||.++.....+.+-.. ++-.-++ .|-++|.|.|..|.+
T Consensus 255 nsmghep~kihiysaswgptddgktvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ 316 (629)
T KOG3526|consen 255 NSMGHEPSKIHIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGED 316 (629)
T ss_pred cccCCCCceEEEEecccCcCCCCcccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCc
Confidence 322221 3568999999998666666655433 3333332 477999999998853
No 43
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=99.74 E-value=2.7e-17 Score=171.64 Aligned_cols=100 Identities=26% Similarity=0.265 Sum_probs=77.9
Q ss_pred ceeccCcceEEEEeeecCCCccCccCCCCCCHHHHHHHHHHHHHC---CCcEEEeccCCCCCC--CCcccHHHHHHHHHH
Q 007328 251 ASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRD---GVHVLSISIGTNQPF--AFNRDGIAIGALNAV 325 (608)
Q Consensus 251 ~~GvAP~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~~~---g~~VIn~SlG~~~~~--~~~~~~~~~~~~~a~ 325 (608)
..||||+|+|+.+++.+.. ...++.++.+++.+ +++|||+|||..... ..+...++.++.++.
T Consensus 83 ~~gvAP~a~i~~~~~~~~~------------~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~ 150 (361)
T cd04056 83 AGAIAPGANITLYFAPGTV------------TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAA 150 (361)
T ss_pred HHhccCCCeEEEEEECCcC------------ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHH
Confidence 5799999999999997642 34567778888876 999999999996322 123356777888899
Q ss_pred hCCcEEEEecCCCCCCCC-----------CCCCCCCceEEeeecccCc
Q 007328 326 KHNILVACSAGNSGPAPS-----------SLSNLAPWLITVGAGSLDR 362 (608)
Q Consensus 326 ~~Gi~vV~AAGN~g~~~~-----------~~~~~~~~vitVga~~~~~ 362 (608)
.+||+||+|+||+|.... ..++..|+|++||+++...
T Consensus 151 ~~GitvvaAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~ 198 (361)
T cd04056 151 AQGITVLAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYT 198 (361)
T ss_pred hCCeEEEEeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccC
Confidence 999999999999997653 2346689999999987554
No 44
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.10 E-value=9.9e-10 Score=99.05 Aligned_cols=117 Identities=27% Similarity=0.309 Sum_probs=87.7
Q ss_pred CcceeEEEcccCccCCcCCCCCCCCCCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCCCCCccccC-
Q 007328 387 KKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYD- 465 (608)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~- 465 (608)
....++++.+. |....+...+++|||+||+|+.|.+.++..+++.+||.++|++++..........
T Consensus 25 ~~~~~lv~~g~-------------g~~~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~ 91 (143)
T cd02133 25 GKTYELVDAGL-------------GTPEDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGE 91 (143)
T ss_pred CcEEEEEEccC-------------CchhccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCC
Confidence 45667776543 4445555668999999999999999999999999999999999988643222221
Q ss_pred CCcccEEEEeHhhHHHHHHHHhcCCCCeEEEEeCeEEeccCCCCcccccccCCCCC
Q 007328 466 AHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNA 521 (608)
Q Consensus 466 ~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fSs~Gp~~ 521 (608)
...+|.++|+..+|+.|..++.+ . +++....+.. ......++.||||||..
T Consensus 92 ~~~iP~v~Is~~dG~~L~~~l~~--~--~~i~~~~~~~-~~~~p~va~fSsrgp~g 142 (143)
T cd02133 92 AVFIPVVFISKEDGEALKAALES--S--KKLTFNTKKE-KATNPDLADFSSRGPWG 142 (143)
T ss_pred CCeEeEEEecHHHHHHHHHHHhC--C--CeEEEEeccc-cccCCccccccCcCCCC
Confidence 34689999999999999999988 3 3444333333 34556799999999963
No 45
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=99.07 E-value=3e-09 Score=93.93 Aligned_cols=123 Identities=51% Similarity=0.825 Sum_probs=98.4
Q ss_pred EEeCCCeEEeeeeeccCCCCcceeEEEcccCccCCcCCCCCCCCCCCCCCCCcccceEEEEecCCC-chhhHHHHHHHcC
Q 007328 368 VVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSG-FKLSKGMEVKRAG 446 (608)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~-~~~~~~~~~~~~g 446 (608)
++++|++++.|++++.... ..+++++.... ........|....+...+++|||++|+++.| .+.++..+++++|
T Consensus 2 i~LGng~~i~G~sl~~~~~-~~~~~~~~~~~----~~~~~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~~~G 76 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL-KTYPLVYKSAN----SGDVDASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGDAVKAAG 76 (126)
T ss_pred EEeCCCCEEEEEEccCCCC-CccceEeccCc----CCCCccccCCCCCCChhhccccEEEEeCCCCccHHHHHHHHHHcC
Confidence 5789999999999997664 46677663321 1234457899888888899999999999999 8899999999999
Q ss_pred ceEEEEEeCCCCCCccccCCCcccEEEEeHhhHHHHHHHHhcCCCCeEE
Q 007328 447 GVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAI 495 (608)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~ 495 (608)
|.++|++++.............+|.+.|..++++.|+.|++++.+++++
T Consensus 77 A~gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 77 GAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred CcEEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 9999999987654433333567999999999999999999987765543
No 46
>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....
Probab=98.77 E-value=1.9e-08 Score=81.48 Aligned_cols=77 Identities=34% Similarity=0.463 Sum_probs=56.8
Q ss_pred eEEEEeCCCCCCCccchhhhHhHHHHHHHhhcCh----hhhhcceEEEecceeeeEEEEcCHHHHHHhhCCCCeEEEEeC
Q 007328 25 VYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNE----EEARASHLYSYKHSINGFSAVLTPDEAARLSELEEVVSVYPS 100 (608)
Q Consensus 25 ~yiV~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~V~~v~~~ 100 (608)
+|||+|+++... ......+.+++.+++.+. .....++.+.|...++||+++++++++++|+++|+|++|+|+
T Consensus 1 ~YIV~~k~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D 76 (82)
T PF05922_consen 1 RYIVVFKDDASA----ASSFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPD 76 (82)
T ss_dssp EEEEEE-TTSTH----HCHHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEE
T ss_pred CEEEEECCCCCc----chhHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeC
Confidence 699999999763 333566666666544322 234578999999899999999999999999999999999999
Q ss_pred CCCcccc
Q 007328 101 HPEKYSL 107 (608)
Q Consensus 101 ~~~~~~~ 107 (608)
. .+++
T Consensus 77 ~--~v~l 81 (82)
T PF05922_consen 77 Q--VVSL 81 (82)
T ss_dssp C--EEEE
T ss_pred c--eEec
Confidence 9 7765
No 47
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=98.69 E-value=1.5e-07 Score=83.65 Aligned_cols=89 Identities=19% Similarity=0.207 Sum_probs=73.9
Q ss_pred CCCCCCCCCC--CCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCCCCCccc----cCCCcccEEEEeHhhHH
Q 007328 407 ETNQCLPGSL--TPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYS----YDAHYLPATAVLYDDAI 480 (608)
Q Consensus 407 ~~~~c~~~~~--~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----~~~~~~p~~~i~~~~~~ 480 (608)
..+.|.+... +..++.++|+|++||.|.|.+|..+++.+||.++|+||+........ .....+|.++|+..+|+
T Consensus 43 ~~~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G~ 122 (138)
T cd02122 43 DHYGCDPDTRFPIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKGM 122 (138)
T ss_pred CcCCCCCCccccCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHHH
Confidence 4578998876 56789999999999999999999999999999999999987322121 12347899999999999
Q ss_pred HHHHHHhcCCCCeEE
Q 007328 481 KIHEYIKSTNNPTAI 495 (608)
Q Consensus 481 ~l~~~~~~~~~~~~~ 495 (608)
.|+..+..+.+.+++
T Consensus 123 ~l~~~l~~G~~Vtv~ 137 (138)
T cd02122 123 EILELLERGISVTMV 137 (138)
T ss_pred HHHHHHHcCCcEEEe
Confidence 999999988776654
No 48
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.64 E-value=2e-07 Score=80.03 Aligned_cols=83 Identities=22% Similarity=0.361 Sum_probs=69.0
Q ss_pred CCCCCCCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCCCCCc--cc--cCCCcccEEEEeHhhHHHH
Q 007328 407 ETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNE--YS--YDAHYLPATAVLYDDAIKI 482 (608)
Q Consensus 407 ~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~--~~~~~~p~~~i~~~~~~~l 482 (608)
....|....+...+++|+|+|++||.|.|.+|..+++.+||.++++||+...... .. .....+|+++|+..+|+.|
T Consensus 29 ~~~gC~~~~~~~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP~v~Is~~dG~~i 108 (120)
T cd02129 29 SSVLCSASDVPPGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIPVALLSYKDMLDI 108 (120)
T ss_pred CcCCCCccccCccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCcccEEEEeHHHHHHH
Confidence 3577998888888899999999999999999999999999999999998763111 11 1345789999999999999
Q ss_pred HHHHhcC
Q 007328 483 HEYIKST 489 (608)
Q Consensus 483 ~~~~~~~ 489 (608)
...+...
T Consensus 109 ~~~l~~~ 115 (120)
T cd02129 109 QQTFGDS 115 (120)
T ss_pred HHHhccC
Confidence 8877643
No 49
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.63 E-value=2.1e-07 Score=81.49 Aligned_cols=88 Identities=18% Similarity=0.180 Sum_probs=73.0
Q ss_pred CCCCCCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCCCCCc---cc--cCCCcccEEEEeHhhHHHH
Q 007328 408 TNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNE---YS--YDAHYLPATAVLYDDAIKI 482 (608)
Q Consensus 408 ~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~--~~~~~~p~~~i~~~~~~~l 482 (608)
.+.|.+..+...+++|||++++|+.|.|.+|..+++++|+.++|++|+...... .. .....+|.++|+..+|+.|
T Consensus 29 ~~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~Is~~~G~~l 108 (122)
T cd04816 29 PAGCDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVITKAAGAAL 108 (122)
T ss_pred ccCCCccccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEEcHHHHHHH
Confidence 477998888878899999999999999999999999999999999998763211 11 1345689999999999999
Q ss_pred HHHHhcCCCCeEE
Q 007328 483 HEYIKSTNNPTAI 495 (608)
Q Consensus 483 ~~~~~~~~~~~~~ 495 (608)
+.++..+.+.+++
T Consensus 109 ~~~l~~g~~v~~~ 121 (122)
T cd04816 109 RRRLGAGETLELD 121 (122)
T ss_pred HHHHcCCCEEEEe
Confidence 9999888765543
No 50
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.63 E-value=3.3e-07 Score=79.17 Aligned_cols=88 Identities=23% Similarity=0.340 Sum_probs=71.9
Q ss_pred CCCCCCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCCCC-Cccc-------cCCCcccEEEEeHhhH
Q 007328 408 TNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANG-NEYS-------YDAHYLPATAVLYDDA 479 (608)
Q Consensus 408 ~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~-------~~~~~~p~~~i~~~~~ 479 (608)
.+.|.+... ..+++++|+|++||.|.|.+|..+++++||.++|+||+.... .... ....++|+++|+..+|
T Consensus 21 ~~gC~~~~~-~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~dG 99 (118)
T cd02127 21 LEACEELRN-IHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKNG 99 (118)
T ss_pred cccCCCCCC-ccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHHH
Confidence 467986443 567899999999999999999999999999999999987642 2111 1235789999999999
Q ss_pred HHHHHHHhcCCCCeEEE
Q 007328 480 IKIHEYIKSTNNPTAII 496 (608)
Q Consensus 480 ~~l~~~~~~~~~~~~~~ 496 (608)
+.|+..+..+..+++.|
T Consensus 100 ~~L~~~l~~g~~~~~~~ 116 (118)
T cd02127 100 YMIRKTLERLGLPYAII 116 (118)
T ss_pred HHHHHHHHcCCceEEee
Confidence 99999999988776654
No 51
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=5.6e-07 Score=102.28 Aligned_cols=95 Identities=19% Similarity=0.188 Sum_probs=59.6
Q ss_pred ceeccCcceEEEEeeecCCCccCccCCCCCCHHHHHHHHHHHHHCCC-cEEEeccCCCCC--CCC--cccHHHHHHHHHH
Q 007328 251 ASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGV-HVLSISIGTNQP--FAF--NRDGIAIGALNAV 325 (608)
Q Consensus 251 ~~GvAP~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~~~g~-~VIn~SlG~~~~--~~~--~~~~~~~~~~~a~ 325 (608)
.+-+||+|+|..+-.-. .....+..++.+...+-+ -++-.||+.... ... .-+.++.....+.
T Consensus 288 s~A~AP~A~I~lvvap~------------~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qas 355 (1174)
T COG4934 288 SHAMAPKANIDLVVAPN------------PLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQAS 355 (1174)
T ss_pred hhccCccCceEEEEcCC------------CceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhh
Confidence 36889999999988721 333334444444333211 334456665311 112 3344555566788
Q ss_pred hCCcEEEEecCCCCCCCCC--------CCCCCCceEEeee
Q 007328 326 KHNILVACSAGNSGPAPSS--------LSNLAPWLITVGA 357 (608)
Q Consensus 326 ~~Gi~vV~AAGN~g~~~~~--------~~~~~~~vitVga 357 (608)
.+|+.+++|+|.+|....+ .++.+|+|.+||.
T Consensus 356 aeGITi~AASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 356 AEGITIFAASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred ccceEEEEecccccccCCCcccceeecccCCCccEEeecC
Confidence 9999999999999876543 2346899999996
No 52
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=98.49 E-value=1e-06 Score=76.74 Aligned_cols=89 Identities=21% Similarity=0.275 Sum_probs=71.9
Q ss_pred CCCCCCCCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCCCCCccc----cCCCcccEEEEeHhhHHH
Q 007328 406 NETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYS----YDAHYLPATAVLYDDAIK 481 (608)
Q Consensus 406 ~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----~~~~~~p~~~i~~~~~~~ 481 (608)
.....|.+.... .+++|||++|+|+.|.|..+..++..+|+.++|++++........ .....+|.++++.++++.
T Consensus 25 ~~~~~C~~~~~~-~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~ 103 (118)
T cd04818 25 SNTDGCTAFTNA-AAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDA 103 (118)
T ss_pred CcccccCCCCcC-CCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHH
Confidence 345779887763 469999999999999999999999999999999999877522211 123468999999999999
Q ss_pred HHHHHhcCCCCeEE
Q 007328 482 IHEYIKSTNNPTAI 495 (608)
Q Consensus 482 l~~~~~~~~~~~~~ 495 (608)
|+.|+..+...+++
T Consensus 104 l~~~l~~g~~v~v~ 117 (118)
T cd04818 104 LKAALAAGGTVTVT 117 (118)
T ss_pred HHHHHhcCCcEEEe
Confidence 99999987765543
No 53
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=98.48 E-value=1.1e-06 Score=77.03 Aligned_cols=86 Identities=26% Similarity=0.339 Sum_probs=69.1
Q ss_pred CCCCCCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCCCC----Ccc---cc-----CCCcccEEEEe
Q 007328 408 TNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANG----NEY---SY-----DAHYLPATAVL 475 (608)
Q Consensus 408 ~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~---~~-----~~~~~p~~~i~ 475 (608)
...|.+... ..+++|+|++++||.|.|.+|..+++++|+.++|++|+.... ... .. +...+|+++|+
T Consensus 27 ~~gC~~~~~-~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I~ 105 (126)
T cd02126 27 YRACSEITN-AEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFLF 105 (126)
T ss_pred hhcccCCCC-ccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEEE
Confidence 467986554 556899999999999999999999999999999999876542 111 11 24578999999
Q ss_pred HhhHHHHHHHHhcCCCCeE
Q 007328 476 YDDAIKIHEYIKSTNNPTA 494 (608)
Q Consensus 476 ~~~~~~l~~~~~~~~~~~~ 494 (608)
..+|+.|+..+..+...++
T Consensus 106 ~~dG~~L~~~l~~~~~~~~ 124 (126)
T cd02126 106 SKEGSKLLAAIKEHQNVEV 124 (126)
T ss_pred HHHHHHHHHHHHhCCceEE
Confidence 9999999999988776554
No 54
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=98.46 E-value=1.2e-06 Score=76.74 Aligned_cols=87 Identities=21% Similarity=0.235 Sum_probs=70.3
Q ss_pred CCCCCCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCCCC-Cc-cc--cCCCcccEEEEeHhhHHHHH
Q 007328 408 TNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANG-NE-YS--YDAHYLPATAVLYDDAIKIH 483 (608)
Q Consensus 408 ~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~-~~--~~~~~~p~~~i~~~~~~~l~ 483 (608)
...|.+..+ +.+++|||++++|+.|.|.+|.+++.++||.++|+||+...+ .. .. .+...+|.++|+.++|+.|+
T Consensus 31 ~~gC~~~~~-~~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~~~G~~L~ 109 (122)
T cd02130 31 NLGCDAADY-PASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQEDGKALV 109 (122)
T ss_pred CCCCCcccC-CcCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecHHHHHHHH
Confidence 346886555 357999999999999999999999999999999999987322 11 11 12457899999999999999
Q ss_pred HHHhcCCCCeEE
Q 007328 484 EYIKSTNNPTAI 495 (608)
Q Consensus 484 ~~~~~~~~~~~~ 495 (608)
..+..+.+.+++
T Consensus 110 ~~l~~g~~v~~~ 121 (122)
T cd02130 110 AALANGGEVSAN 121 (122)
T ss_pred HHHhcCCcEEEe
Confidence 999988876654
No 55
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=98.46 E-value=1.2e-06 Score=76.70 Aligned_cols=89 Identities=13% Similarity=0.122 Sum_probs=69.8
Q ss_pred CCCCCCCCCCCC--C----cccceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCCCCCcc-----------ccCCCcc
Q 007328 407 ETNQCLPGSLTP--E----KVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEY-----------SYDAHYL 469 (608)
Q Consensus 407 ~~~~c~~~~~~~--~----~~~g~i~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-----------~~~~~~~ 469 (608)
..+.|.+..... . ...++|+|++||.|.|.+|..+++++||.++|+||+....... .....++
T Consensus 21 ~~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~I 100 (127)
T cd02125 21 NRTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITI 100 (127)
T ss_pred ccccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCceE
Confidence 456788765432 2 3678999999999999999999999999999999987642110 1123468
Q ss_pred cEEEEeHhhHHHHHHHHhcCCCCeEE
Q 007328 470 PATAVLYDDAIKIHEYIKSTNNPTAI 495 (608)
Q Consensus 470 p~~~i~~~~~~~l~~~~~~~~~~~~~ 495 (608)
|+++|+..+|+.|+..+..+...+++
T Consensus 101 P~v~Is~~~G~~L~~~l~~g~~V~v~ 126 (127)
T cd02125 101 PSALITKAFGEKLKKAISNGEMVVIK 126 (127)
T ss_pred eEEEECHHHHHHHHHHHhcCCeEEEe
Confidence 99999999999999999988776553
No 56
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.43 E-value=1.6e-06 Score=77.42 Aligned_cols=84 Identities=15% Similarity=0.203 Sum_probs=68.6
Q ss_pred CCCCCCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCCCCCccc------cCCCcccEEEEeHhhHHH
Q 007328 408 TNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYS------YDAHYLPATAVLYDDAIK 481 (608)
Q Consensus 408 ~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~------~~~~~~p~~~i~~~~~~~ 481 (608)
.+.|.+.. .+++|+|+|++||.|.|.+|..+++++||.++|+||+........ .....+|+++|+..+|+.
T Consensus 48 ~~gC~~~~---~~~~g~IvLV~RG~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G~~ 124 (139)
T cd02132 48 LDCCSPST---SKLSGSIALVERGECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAGDA 124 (139)
T ss_pred ccccCCCC---cccCCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHHHH
Confidence 46798764 378999999999999999999999999999999999775322111 113578999999999999
Q ss_pred HHHHHhcCCCCeE
Q 007328 482 IHEYIKSTNNPTA 494 (608)
Q Consensus 482 l~~~~~~~~~~~~ 494 (608)
|+..+..+...++
T Consensus 125 L~~~l~~g~~Vtv 137 (139)
T cd02132 125 LNKSLDQGKKVEV 137 (139)
T ss_pred HHHHHHcCCcEEE
Confidence 9999988876554
No 57
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=98.43 E-value=4.7e-07 Score=76.38 Aligned_cols=78 Identities=33% Similarity=0.482 Sum_probs=62.8
Q ss_pred CCCCCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCCC----CCccccCCCcccEEEEeHhhHHHHHH
Q 007328 409 NQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPAN----GNEYSYDAHYLPATAVLYDDAIKIHE 484 (608)
Q Consensus 409 ~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~~~p~~~i~~~~~~~l~~ 484 (608)
..|.+......+++|||++|+||.|.|.+|..+++++||.++|+++.... ..........+|+++|+..+|+.|++
T Consensus 20 ~~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~L~~ 99 (101)
T PF02225_consen 20 GDCCPSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYEDGEALLA 99 (101)
T ss_dssp CHHHHHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHHHHH
T ss_pred ccccccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHHHhhhhc
Confidence 44667777788999999999999999999999999999999999992211 12233446799999999999999998
Q ss_pred HH
Q 007328 485 YI 486 (608)
Q Consensus 485 ~~ 486 (608)
|+
T Consensus 100 ~i 101 (101)
T PF02225_consen 100 YI 101 (101)
T ss_dssp HH
T ss_pred cC
Confidence 75
No 58
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=1.3e-06 Score=92.44 Aligned_cols=158 Identities=17% Similarity=0.122 Sum_probs=98.5
Q ss_pred chhhhccccCCCceEEEEeeccccCCCCCCCCCCCCCCCCCCcceeecccccCCcCCCceeeeeEecccccccccCCCCC
Q 007328 132 GQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNA 211 (608)
Q Consensus 132 ~~~~~~~~~tG~gV~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~ 211 (608)
+...|..+++|+++.|+|.|.|+...||+.... + ...+..++...-. .
T Consensus 22 v~~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~-~------------------------~~~~s~d~~~~~~-------~ 69 (431)
T KOG3525|consen 22 VQNAWCKGYTGTRVSVTILDDGLECSHPDLRNN-Y------------------------DPLGSYDVNRHDN-------D 69 (431)
T ss_pred eeeccccCCCCCceEEEEeeccccccCcccccc-c------------------------CcceeEeeecCCC-------C
Confidence 458899999999999999999999999998743 1 1122222221100 0
Q ss_pred CCCCCCCCCCCCCcccchhhhccCCCCCCCCCCCcCCccceeccCcceEEEEeeecCCCccCccCCCCCCHHHHHHHHHH
Q 007328 212 TEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDD 291 (608)
Q Consensus 212 ~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~ 291 (608)
..+-.+......|||-|++-.+.... ...-..|++|++++..++++...- ++...+...
T Consensus 70 p~~~~~~~~~~~~g~~Ca~~~a~~~~---------~~~C~vg~~~~~~~~g~~~l~~~v------------~~~~~~~~~ 128 (431)
T KOG3525|consen 70 PEPRCDGTNENKHGTRCAGCVAARAN---------NLTCGVGVAYNATIGGIRMLAGCV------------SDAVEAPSL 128 (431)
T ss_pred cccccCCCCccccCCCCCcccccccC---------CCcCCCCcccCccccceeeeeeec------------ccceecccc
Confidence 11112222358899999999998841 111235999999999999986432 122222222
Q ss_pred HHH-CCCcEEEeccCCCCCCCCcccH---HHHHHHH-----HHhCCcEEEEecCCCCCCC
Q 007328 292 AIR-DGVHVLSISIGTNQPFAFNRDG---IAIGALN-----AVKHNILVACSAGNSGPAP 342 (608)
Q Consensus 292 a~~-~g~~VIn~SlG~~~~~~~~~~~---~~~~~~~-----a~~~Gi~vV~AAGN~g~~~ 342 (608)
... .-+++-..|||-.........+ ...+... ...+|-++|+|.||.|...
T Consensus 129 ~~~~~~~di~scsw~pddd~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~ 188 (431)
T KOG3525|consen 129 GFGPCHIDIYSCSWGPDDDGKTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCG 188 (431)
T ss_pred cCCCCCceeecCcCCcccCCCcCCCCcchhhhhhhccccccccCCCCeeEEEecCccccc
Confidence 222 3568899999986443333322 2222222 2356889999999988543
No 59
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.38 E-value=2.9e-06 Score=74.58 Aligned_cols=89 Identities=19% Similarity=0.199 Sum_probs=68.9
Q ss_pred CCCCCCCCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCCCCCcc-ccCCCcccEEEEeHhhHHHHHH
Q 007328 406 NETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEY-SYDAHYLPATAVLYDDAIKIHE 484 (608)
Q Consensus 406 ~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~p~~~i~~~~~~~l~~ 484 (608)
...+.|.+.+.+..+++++|+|++||.|.|.+|..+++++|+.++|+||+....... ..+...++.+.+ ..+|+.|+.
T Consensus 39 ~~~~gC~~~~~~~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~~-~~~G~~l~~ 117 (129)
T cd02124 39 VADDACQPLPDDTPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAVT-PEDGEAWID 117 (129)
T ss_pred CCcccCcCCCcccccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEEe-HHHHHHHHH
Confidence 345789977666668999999999999999999999999999999999987643211 122334455555 999999999
Q ss_pred HHhcCCCCeEE
Q 007328 485 YIKSTNNPTAI 495 (608)
Q Consensus 485 ~~~~~~~~~~~ 495 (608)
.+..+...+++
T Consensus 118 ~l~~G~~vtv~ 128 (129)
T cd02124 118 ALAAGSNVTVD 128 (129)
T ss_pred HHhcCCeEEEe
Confidence 99877665543
No 60
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=98.36 E-value=2.6e-06 Score=73.46 Aligned_cols=82 Identities=21% Similarity=0.274 Sum_probs=66.0
Q ss_pred CCCCCCCCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCCCCCc------cccCCCcccEEEEeHhhH
Q 007328 406 NETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNE------YSYDAHYLPATAVLYDDA 479 (608)
Q Consensus 406 ~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~------~~~~~~~~p~~~i~~~~~ 479 (608)
...+.|.+. +..+++++|+|++||.|.|.+|..+++++||.++++||+...... .......+|+++++.+++
T Consensus 25 ~p~~gC~~~--~~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g 102 (117)
T cd04813 25 SPTDACSLQ--EHAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSY 102 (117)
T ss_pred CCCCCCCCC--CcCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHH
Confidence 345789766 557899999999999999999999999999999999997764211 112245789999999999
Q ss_pred HHHHHHHhcC
Q 007328 480 IKIHEYIKST 489 (608)
Q Consensus 480 ~~l~~~~~~~ 489 (608)
+.|..+....
T Consensus 103 ~~L~~l~~~~ 112 (117)
T cd04813 103 HLLSSLLPKS 112 (117)
T ss_pred HHHHHhcccc
Confidence 9998876543
No 61
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=98.34 E-value=2.7e-06 Score=74.87 Aligned_cols=88 Identities=24% Similarity=0.289 Sum_probs=71.6
Q ss_pred CCCCCCCCC--CCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCCCCCcc--c----cCCCcccEEEEeHhh
Q 007328 407 ETNQCLPGS--LTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEY--S----YDAHYLPATAVLYDD 478 (608)
Q Consensus 407 ~~~~c~~~~--~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~----~~~~~~p~~~i~~~~ 478 (608)
....|.+.. +...+++|||++|+++.|.+..+..+++++|+.++|++++....... . .....+|.++|+..+
T Consensus 29 ~~~~C~~~~~~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~~ 108 (126)
T cd00538 29 PLVGCGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYAD 108 (126)
T ss_pred ceEEEecCcccccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHHH
Confidence 445688776 66788999999999999999999999999999999999988632111 1 134579999999999
Q ss_pred HHHHHHHHhcCCCCeE
Q 007328 479 AIKIHEYIKSTNNPTA 494 (608)
Q Consensus 479 ~~~l~~~~~~~~~~~~ 494 (608)
++.|+.++..+.+.++
T Consensus 109 g~~l~~~~~~~~~v~~ 124 (126)
T cd00538 109 GEALLSLLEAGKTVTV 124 (126)
T ss_pred HHHHHHHHhcCCceEE
Confidence 9999999988665443
No 62
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.27 E-value=4.7e-06 Score=73.72 Aligned_cols=74 Identities=20% Similarity=0.262 Sum_probs=60.7
Q ss_pred CCCCcccceEEEEecCCCc-----hhhHHHHHHHcCceEEEEEeCC--CCCC-ccccC---CCcccEEEEeHhhHHHHHH
Q 007328 416 LTPEKVKGKIVLCMRGSGF-----KLSKGMEVKRAGGVGLILGNSP--ANGN-EYSYD---AHYLPATAVLYDDAIKIHE 484 (608)
Q Consensus 416 ~~~~~~~g~i~~~~~g~~~-----~~~~~~~~~~~g~~~~~~~~~~--~~~~-~~~~~---~~~~p~~~i~~~~~~~l~~ 484 (608)
+...+++|||+|++||.|. |.+|.++++++||.++|+||+. .... ....+ ..++|+++++..+|+.|+.
T Consensus 50 ~~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~~ 129 (139)
T cd04817 50 YICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALLA 129 (139)
T ss_pred ccCCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHHH
Confidence 4455789999999999999 9999999999999999999998 3211 12222 4689999999999999998
Q ss_pred HHhcC
Q 007328 485 YIKST 489 (608)
Q Consensus 485 ~~~~~ 489 (608)
.+...
T Consensus 130 ~l~~~ 134 (139)
T cd04817 130 ALGQS 134 (139)
T ss_pred HhcCC
Confidence 87544
No 63
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=98.23 E-value=8.3e-06 Score=74.10 Aligned_cols=84 Identities=24% Similarity=0.199 Sum_probs=69.2
Q ss_pred CCCCCCCCCCC---CcccceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCCCCC-cccc-----CCCcccEEEEeHhh
Q 007328 408 TNQCLPGSLTP---EKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGN-EYSY-----DAHYLPATAVLYDD 478 (608)
Q Consensus 408 ~~~c~~~~~~~---~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~-----~~~~~p~~~i~~~~ 478 (608)
.++|.+....+ ....++|++++||.|.|.+|..+++++|+.++|++|+..... .... ....+|+++|+..+
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~d 129 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKST 129 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHHH
Confidence 56798776643 789999999999999999999999999999999999876421 1111 14589999999999
Q ss_pred HHHHHHHHhcCCC
Q 007328 479 AIKIHEYIKSTNN 491 (608)
Q Consensus 479 ~~~l~~~~~~~~~ 491 (608)
|+.|..++.....
T Consensus 130 g~~L~~~l~~~~~ 142 (153)
T cd02123 130 GEILKKYASYEKG 142 (153)
T ss_pred HHHHHHHHhcCCc
Confidence 9999999887655
No 64
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=97.87 E-value=0.00029 Score=61.95 Aligned_cols=76 Identities=16% Similarity=0.201 Sum_probs=61.9
Q ss_pred CCCCcccceEEEEecCCC--chhhHHHHHHHcCceEEEEEeCCCCCCccc-------cCCCcccEEEEeHhhHHHHHHHH
Q 007328 416 LTPEKVKGKIVLCMRGSG--FKLSKGMEVKRAGGVGLILGNSPANGNEYS-------YDAHYLPATAVLYDDAIKIHEYI 486 (608)
Q Consensus 416 ~~~~~~~g~i~~~~~g~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-------~~~~~~p~~~i~~~~~~~l~~~~ 486 (608)
+...+++|||++++++.| .+..+..++.+.||.++|+++......... .....+|.+.|+.+++..|...+
T Consensus 38 ~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~~~~~~~IP~v~Is~edg~~L~~~l 117 (127)
T cd04819 38 FDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTEDGPPSPIPAASVSGEDGLRLARVA 117 (127)
T ss_pred cCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccccccCCCCCCCCEEEEeHHHHHHHHHHH
Confidence 335579999999999999 889999999999999999998766532211 22457999999999999999998
Q ss_pred hcCCC
Q 007328 487 KSTNN 491 (608)
Q Consensus 487 ~~~~~ 491 (608)
+.+..
T Consensus 118 ~~g~~ 122 (127)
T cd04819 118 ERNDT 122 (127)
T ss_pred hcCCc
Confidence 87543
No 65
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=96.97 E-value=0.004 Score=55.23 Aligned_cols=78 Identities=19% Similarity=0.185 Sum_probs=61.2
Q ss_pred CCCcccceEEEEecCCC------chhhH-------HHHHHHcCceEEEEEeCCCC-------CCccc-cCCCcccEEEEe
Q 007328 417 TPEKVKGKIVLCMRGSG------FKLSK-------GMEVKRAGGVGLILGNSPAN-------GNEYS-YDAHYLPATAVL 475 (608)
Q Consensus 417 ~~~~~~g~i~~~~~g~~------~~~~~-------~~~~~~~g~~~~~~~~~~~~-------~~~~~-~~~~~~p~~~i~ 475 (608)
...+++|||+++.++.| .|..+ .+.+.++||.++|+++.... +.... .....+|++.|+
T Consensus 34 ~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~is 113 (134)
T cd04815 34 PAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAIS 113 (134)
T ss_pred chhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEec
Confidence 35689999999999999 88887 68999999999999996432 11111 223569999999
Q ss_pred HhhHHHHHHHHhcCCCCeE
Q 007328 476 YDDAIKIHEYIKSTNNPTA 494 (608)
Q Consensus 476 ~~~~~~l~~~~~~~~~~~~ 494 (608)
.+++..|...+..+..+.+
T Consensus 114 ~ed~~~L~r~l~~g~~v~~ 132 (134)
T cd04815 114 VEDADMLERLAARGKPIRV 132 (134)
T ss_pred hhcHHHHHHHHhCCCCeEE
Confidence 9999999999888765443
No 66
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=96.04 E-value=0.03 Score=58.25 Aligned_cols=83 Identities=20% Similarity=0.296 Sum_probs=67.4
Q ss_pred CCcccceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCCCC------CccccCCCcccEEEEeHhhHHHHHHHHhcCCC
Q 007328 418 PEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANG------NEYSYDAHYLPATAVLYDDAIKIHEYIKSTNN 491 (608)
Q Consensus 418 ~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~------~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~ 491 (608)
...+++++++..||+|.|.+|.+.++++||.++++.|+..+- +.....+..+|..++...+++.+..-...+.+
T Consensus 91 ~~kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~ 170 (541)
T KOG2442|consen 91 QSKLSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDN 170 (541)
T ss_pred CccccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCCe
Confidence 346889999999999999999999999999999999995532 22333477999999999999999887777776
Q ss_pred CeEEEEeCe
Q 007328 492 PTAIIKQAR 500 (608)
Q Consensus 492 ~~~~~~~~~ 500 (608)
.++.+....
T Consensus 171 V~~~lYaPk 179 (541)
T KOG2442|consen 171 VELALYAPK 179 (541)
T ss_pred EEEEEECCC
Confidence 666665443
No 67
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=94.68 E-value=0.049 Score=50.55 Aligned_cols=39 Identities=26% Similarity=0.355 Sum_probs=36.4
Q ss_pred CCcccceEEEEecCCCchhhHHHHHHHcCceEEEEEeCC
Q 007328 418 PEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSP 456 (608)
Q Consensus 418 ~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~ 456 (608)
..+++|||+|++++.|.+.+|..+++++||.++|+|++.
T Consensus 51 gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp 89 (183)
T cd02128 51 GVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDP 89 (183)
T ss_pred CCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCH
Confidence 457899999999999999999999999999999999984
No 68
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=94.53 E-value=0.079 Score=47.15 Aligned_cols=49 Identities=24% Similarity=0.239 Sum_probs=42.8
Q ss_pred CCCCCCCCCCCcccceEEEEecCCC------------------chhhHHHHHHHcCceEEEEEeCCC
Q 007328 409 NQCLPGSLTPEKVKGKIVLCMRGSG------------------FKLSKGMEVKRAGGVGLILGNSPA 457 (608)
Q Consensus 409 ~~c~~~~~~~~~~~g~i~~~~~g~~------------------~~~~~~~~~~~~g~~~~~~~~~~~ 457 (608)
..|....+...+++|||+++.++.| .+..|.+.+.++||.++|++++..
T Consensus 34 ~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii~~~~ 100 (142)
T cd04814 34 PELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIVHELA 100 (142)
T ss_pred CCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEEeCCC
Confidence 4577778888899999999999877 366799999999999999999876
No 69
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=94.20 E-value=0.1 Score=46.07 Aligned_cols=49 Identities=27% Similarity=0.346 Sum_probs=42.2
Q ss_pred CCCCCCCCCCCcccceEEEEecCCCc------------hhhHHHHHHHcCceEEEEEeCCC
Q 007328 409 NQCLPGSLTPEKVKGKIVLCMRGSGF------------KLSKGMEVKRAGGVGLILGNSPA 457 (608)
Q Consensus 409 ~~c~~~~~~~~~~~g~i~~~~~g~~~------------~~~~~~~~~~~g~~~~~~~~~~~ 457 (608)
..|....+...+++|||+++.++.|. +..|.+.+...||.++|++++..
T Consensus 36 ~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~ 96 (137)
T cd04820 36 PELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPR 96 (137)
T ss_pred cCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCc
Confidence 45777777778999999999998873 66799999999999999999865
No 70
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=93.65 E-value=0.16 Score=45.84 Aligned_cols=51 Identities=27% Similarity=0.315 Sum_probs=41.9
Q ss_pred CCCCCCCCCCCCcccceEEEEecCC------------------CchhhHHHHHHHcCceEEEEEeCCCC
Q 007328 408 TNQCLPGSLTPEKVKGKIVLCMRGS------------------GFKLSKGMEVKRAGGVGLILGNSPAN 458 (608)
Q Consensus 408 ~~~c~~~~~~~~~~~g~i~~~~~g~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~ 458 (608)
...|....+...+++|||+++.++. |.+..|..++...|+.++|+|++...
T Consensus 33 ~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d~~~ 101 (151)
T cd04822 33 APELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNGPNS 101 (151)
T ss_pred ccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeCCcc
Confidence 3457666777789999999998763 55778999999999999999998753
No 71
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=92.90 E-value=0.17 Score=44.64 Aligned_cols=91 Identities=20% Similarity=0.194 Sum_probs=65.9
Q ss_pred CCCCCCCCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCCCCCcc------c----cCCCcccEEEEe
Q 007328 406 NETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEY------S----YDAHYLPATAVL 475 (608)
Q Consensus 406 ~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~------~----~~~~~~p~~~i~ 475 (608)
....+|.... +.....+.+.+.+||.|+|..|..++.++|+.++|+..+.+...+. + .+...+|..++.
T Consensus 72 dPp~aC~elr-N~~f~~d~vaL~eRGeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~sq~~AniPa~fll 150 (193)
T KOG3920|consen 72 DPPHACEELR-NEIFAPDSVALMERGECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDESQDRANIPAVFLL 150 (193)
T ss_pred CChhHHHHHh-hcccCCCcEEEEecCCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCcccccccCCceEEEe
Confidence 3455676433 2335678999999999999999999999999999999988765432 1 235678999998
Q ss_pred HhhHHHHHHHHhcCCCCeEEEE
Q 007328 476 YDDAIKIHEYIKSTNNPTAIIK 497 (608)
Q Consensus 476 ~~~~~~l~~~~~~~~~~~~~~~ 497 (608)
..+|..+..-+..-...-+.++
T Consensus 151 g~~Gy~ir~sL~r~~r~ha~i~ 172 (193)
T KOG3920|consen 151 GVTGYYIRVSLKRYFRDHAKID 172 (193)
T ss_pred ccceEEEehhHHHhCCccEEEe
Confidence 8888766666555554444443
No 72
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=92.68 E-value=0.18 Score=44.95 Aligned_cols=39 Identities=28% Similarity=0.231 Sum_probs=36.5
Q ss_pred CcccceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCC
Q 007328 419 EKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPA 457 (608)
Q Consensus 419 ~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~ 457 (608)
-+++|||++++.|...+-.|+++++..|+.++|+|.+..
T Consensus 37 V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~ 75 (153)
T cd02131 37 MNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPC 75 (153)
T ss_pred CCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChh
Confidence 479999999999999999999999999999999999864
No 73
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.29 E-value=0.36 Score=49.19 Aligned_cols=82 Identities=18% Similarity=0.109 Sum_probs=62.7
Q ss_pred CCCCCCCCC---CCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCCCCCccc----cCCCcccEEEEeHhhHH
Q 007328 408 TNQCLPGSL---TPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYS----YDAHYLPATAVLYDDAI 480 (608)
Q Consensus 408 ~~~c~~~~~---~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----~~~~~~p~~~i~~~~~~ 480 (608)
.++|.+..- ........+++..||+|.|.+|..+++++|..++|+||+........ .....++..+++...|+
T Consensus 62 ~~aC~~i~~~p~~~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ge 141 (348)
T KOG4628|consen 62 LNACNPITNFPEHSTRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSGE 141 (348)
T ss_pred ccccCccccCccCCCCCcceEEEEEccCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehHH
Confidence 356765433 13456678999999999999999999999999999999877653322 23567788999999999
Q ss_pred HHHHHHhcC
Q 007328 481 KIHEYIKST 489 (608)
Q Consensus 481 ~l~~~~~~~ 489 (608)
.|..|....
T Consensus 142 ~l~~~~~~~ 150 (348)
T KOG4628|consen 142 LLSSYAGRT 150 (348)
T ss_pred HHHHhhccc
Confidence 888875443
No 74
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=92.12 E-value=0.27 Score=47.24 Aligned_cols=40 Identities=40% Similarity=0.499 Sum_probs=36.7
Q ss_pred CCcccceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCC
Q 007328 418 PEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPA 457 (608)
Q Consensus 418 ~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~ 457 (608)
..+++|||+|++++.+....|..+++..||.++|+|++..
T Consensus 67 gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~ 106 (220)
T cd02121 67 GIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPA 106 (220)
T ss_pred CCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCch
Confidence 4579999999999999888999999999999999999764
No 75
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=82.68 E-value=0.88 Score=51.51 Aligned_cols=24 Identities=25% Similarity=0.494 Sum_probs=22.2
Q ss_pred ccCCCceEEEEeeccccCCCCCCC
Q 007328 139 ARYGQDVIVGLVDNGVWPESKSFS 162 (608)
Q Consensus 139 ~~tG~gV~VaViDtGid~~Hp~f~ 162 (608)
.+.|+||+|||+|||||+.-|-+.
T Consensus 77 eYDGRgV~IaIlDtGvDP~apGl~ 100 (1304)
T KOG1114|consen 77 EYDGRGVTIAILDTGVDPSAPGLQ 100 (1304)
T ss_pred CCCCCceEEEEeecCCCCCCCCce
Confidence 689999999999999999988875
No 76
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=65.35 E-value=13 Score=33.70 Aligned_cols=43 Identities=23% Similarity=0.205 Sum_probs=33.3
Q ss_pred CCCCCcccceEEEEecCCCc-------------------hhhHHHHHHHcCceEEEEEeCCC
Q 007328 415 SLTPEKVKGKIVLCMRGSGF-------------------KLSKGMEVKRAGGVGLILGNSPA 457 (608)
Q Consensus 415 ~~~~~~~~g~i~~~~~g~~~-------------------~~~~~~~~~~~g~~~~~~~~~~~ 457 (608)
.+...+++|||+++..+.-. ...|.+.+...||.++|++....
T Consensus 42 Dy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~~ 103 (157)
T cd04821 42 DYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHETE 103 (157)
T ss_pred cccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCCC
Confidence 44567899999998865432 22388999999999999998754
No 77
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=54.96 E-value=4.6 Score=27.51 Aligned_cols=21 Identities=43% Similarity=0.640 Sum_probs=13.7
Q ss_pred CchhHHHHHHHHHHhhccccc
Q 007328 1 MTKIFIFFLFLLTLLASSAQK 21 (608)
Q Consensus 1 m~~~~~~~l~~~~~~~~~~~~ 21 (608)
|||+++++++++.++..+++.
T Consensus 1 MkKi~~~~i~~~~~~L~aCQa 21 (46)
T PF02402_consen 1 MKKIIFIGIFLLTMLLAACQA 21 (46)
T ss_pred CcEEEEeHHHHHHHHHHHhhh
Confidence 899877766666655555543
No 78
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=52.30 E-value=9.4 Score=22.91 Aligned_cols=17 Identities=35% Similarity=0.458 Sum_probs=10.0
Q ss_pred CchhHHHHHHHHHHhhc
Q 007328 1 MTKIFIFFLFLLTLLAS 17 (608)
Q Consensus 1 m~~~~~~~l~~~~~~~~ 17 (608)
|||+++.++.++.+..+
T Consensus 7 mKkil~~l~a~~~LagC 23 (25)
T PF08139_consen 7 MKKILFPLLALFMLAGC 23 (25)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 37777666655555443
No 79
>PRK15019 CsdA-binding activator; Provisional
Probab=50.44 E-value=16 Score=32.72 Aligned_cols=33 Identities=21% Similarity=0.170 Sum_probs=27.8
Q ss_pred eeccchhhHHHHHHHHHHHHHHhCCCCCHHHHHH
Q 007328 561 TIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRS 594 (608)
Q Consensus 561 ~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~ 594 (608)
..+.|.| =|++|-|.+|||.+.+-+.+|++|.+
T Consensus 77 ~~f~~dS-DA~IvkGl~alL~~~~~g~tp~eIl~ 109 (147)
T PRK15019 77 MHFFGDS-EGRIVRGLLAVLLTAVEGKTAAELQA 109 (147)
T ss_pred EEEEeeC-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 3444555 57999999999999999999999876
No 80
>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE. Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=49.96 E-value=15 Score=32.62 Aligned_cols=34 Identities=18% Similarity=0.096 Sum_probs=28.3
Q ss_pred eeccchhhHHHHHHHHHHHHHHhCCCCCHHHHHHH
Q 007328 561 TIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSA 595 (608)
Q Consensus 561 ~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~ 595 (608)
..+.|.| =|++|-|++|||++.+-+.+|++|.+.
T Consensus 72 ~~f~~dS-Da~IvkGl~alL~~~~~g~tp~eI~~~ 105 (138)
T TIGR03391 72 LHFYGDS-EGRIVRGLLAVLLTAVEGKTPEQLLAQ 105 (138)
T ss_pred EEEEecC-ccHHHHHHHHHHHHHHcCCCHHHHHHC
Confidence 3455666 489999999999999999999998743
No 81
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=48.00 E-value=18 Score=23.12 Aligned_cols=13 Identities=31% Similarity=0.475 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHH
Q 007328 568 MSCPHVAAAAALL 580 (608)
Q Consensus 568 mAaP~VAG~aALl 580 (608)
.|||.+||+++-+
T Consensus 14 LAAP~iagIi~s~ 26 (35)
T PF13940_consen 14 LAAPIIAGIIASL 26 (35)
T ss_pred hHhHHHHHHHHHH
Confidence 5899999998855
No 82
>COG2166 sufE Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]
Probab=47.30 E-value=19 Score=31.97 Aligned_cols=33 Identities=27% Similarity=0.166 Sum_probs=26.3
Q ss_pred eeccchhhHHHHHHHHHHHHHHhCCCCCHHHHHH
Q 007328 561 TIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRS 594 (608)
Q Consensus 561 ~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~ 594 (608)
..+.|=|= |++|.|.+|++++.+...||++|..
T Consensus 72 ~~F~gdSd-A~ivrGL~aill~~~~G~t~~eI~~ 104 (144)
T COG2166 72 LHFFGDSD-ARIVRGLLAILLAAYSGKTAAEILA 104 (144)
T ss_pred EEEeccch-hHHHHHHHHHHHHHHcCCCHHHHHc
Confidence 33444443 6899999999999999999999853
No 83
>PRK09296 cysteine desufuration protein SufE; Provisional
Probab=46.38 E-value=18 Score=32.05 Aligned_cols=33 Identities=15% Similarity=0.152 Sum_probs=27.8
Q ss_pred eeccchhhHHHHHHHHHHHHHHhCCCCCHHHHHH
Q 007328 561 TIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRS 594 (608)
Q Consensus 561 ~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~ 594 (608)
..+.|.| =|++|-|.+||+.+.+-+.||++|.+
T Consensus 67 ~~f~~dS-Da~ivkGl~alL~~~~~g~tp~eIl~ 99 (138)
T PRK09296 67 IELQGDS-DAAIVKGLIAVVFILYQQMTPQDIVN 99 (138)
T ss_pred EEEEEec-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 3444666 58999999999999999999999865
No 84
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=45.22 E-value=24 Score=23.94 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=19.5
Q ss_pred HHHHHHhCCCCCHHHHHHHHHhcCc
Q 007328 577 AALLKAIHPDWSSAAIRSALMTTGN 601 (608)
Q Consensus 577 aALl~q~~p~lt~~~ik~~L~~tA~ 601 (608)
+--|++.||++++..|+..|...-.
T Consensus 5 v~~L~~mFP~~~~~~I~~~L~~~~~ 29 (42)
T PF02845_consen 5 VQQLQEMFPDLDREVIEAVLQANNG 29 (42)
T ss_dssp HHHHHHHSSSS-HHHHHHHHHHTTT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHcCC
Confidence 3467889999999999999976543
No 85
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=43.84 E-value=13 Score=26.12 Aligned_cols=20 Identities=25% Similarity=0.434 Sum_probs=12.0
Q ss_pred CchhHHHHHHHHHHhhcccc
Q 007328 1 MTKIFIFFLFLLTLLASSAQ 20 (608)
Q Consensus 1 m~~~~~~~l~~~~~~~~~~~ 20 (608)
|||.+++++++-++..+.+.
T Consensus 3 lKKsllLlfflG~ISlSlCe 22 (46)
T PF03032_consen 3 LKKSLLLLFFLGTISLSLCE 22 (46)
T ss_pred chHHHHHHHHHHHcccchHH
Confidence 67877766555455545443
No 86
>PF02657 SufE: Fe-S metabolism associated domain; InterPro: IPR003808 This entry represents the core domain of SufE and related proteins. This domain of SufE shows strong structural similarity to IscU, and the sulfur-acceptor site in SufE coincides with the location of the cysteine residues mediating Fe-S cluster assembly in IscU. Thus, a conserved core structure is implicated in mediating the interactions of both SufE and IscU with the mutually homologous cysteine desulfurase enzymes present in their respective operons [].; PDB: 1MZG_B 1WLO_A 3G0M_A 1NI7_A.
Probab=41.78 E-value=28 Score=30.37 Aligned_cols=32 Identities=22% Similarity=0.144 Sum_probs=25.9
Q ss_pred eccchhhHHHHHHHHHHHHHHhCCCCCHHHHHH
Q 007328 562 IFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRS 594 (608)
Q Consensus 562 ~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~ 594 (608)
.+.|.|= |++|-|++||+.+.+-+.+|++|.+
T Consensus 59 ~f~adSd-a~ivkGl~all~~~~~g~t~~eI~~ 90 (125)
T PF02657_consen 59 HFRADSD-ARIVKGLLALLLEVLNGQTPEEILA 90 (125)
T ss_dssp EEEEEES-SHHHHHHHHHHHHHTTT-BHHHHHH
T ss_pred EEEecCc-cHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 4455655 6799999999999999999999865
No 87
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=37.72 E-value=19 Score=29.64 Aligned_cols=9 Identities=33% Similarity=0.659 Sum_probs=4.2
Q ss_pred hhHHHHHHH
Q 007328 3 KIFIFFLFL 11 (608)
Q Consensus 3 ~~~~~~l~~ 11 (608)
|.||||.|+
T Consensus 4 K~~llL~l~ 12 (95)
T PF07172_consen 4 KAFLLLGLL 12 (95)
T ss_pred hHHHHHHHH
Confidence 555444443
No 88
>COG5567 Predicted small periplasmic lipoprotein [Cell motility and secretion]
Probab=37.53 E-value=30 Score=24.97 Aligned_cols=25 Identities=28% Similarity=0.285 Sum_probs=19.1
Q ss_pred CchhHHHHHHHHHHhhcccccCCce
Q 007328 1 MTKIFIFFLFLLTLLASSAQKQKQV 25 (608)
Q Consensus 1 m~~~~~~~l~~~~~~~~~~~~~~~~ 25 (608)
||+.|..+++++++++.++...++-
T Consensus 1 mk~~~~s~~ala~l~sLA~CG~KGP 25 (58)
T COG5567 1 MKNVFKSLLALATLFSLAGCGLKGP 25 (58)
T ss_pred ChhHHHHHHHHHHHHHHHhcccCCC
Confidence 8888888787777778777766654
No 89
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=37.53 E-value=54 Score=22.30 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=21.2
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHhcC
Q 007328 576 AAALLKAIHPDWSSAAIRSALMTTG 600 (608)
Q Consensus 576 ~aALl~q~~p~lt~~~ik~~L~~tA 600 (608)
.+..|++.||+++...|+..|...-
T Consensus 5 ~v~~L~~mFP~l~~~~I~~~L~~~~ 29 (43)
T smart00546 5 ALHDLKDMFPNLDEEVIKAVLEANN 29 (43)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHcC
Confidence 4567889999999999999998543
No 90
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=36.76 E-value=16 Score=15.50 Aligned_cols=6 Identities=50% Similarity=0.800 Sum_probs=4.0
Q ss_pred ccccCC
Q 007328 513 NFTSRG 518 (608)
Q Consensus 513 ~fSs~G 518 (608)
.|+|||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 577776
No 91
>PRK13883 conjugal transfer protein TrbH; Provisional
Probab=35.16 E-value=69 Score=28.85 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=18.2
Q ss_pred CchhHHHHHHHHHHhhcccccCCceEE
Q 007328 1 MTKIFIFFLFLLTLLASSAQKQKQVYI 27 (608)
Q Consensus 1 m~~~~~~~l~~~~~~~~~~~~~~~~yi 27 (608)
|||+++++++++++..++. ...+.|.
T Consensus 1 Mrk~l~~~~l~l~LaGCAt-~~~gnf~ 26 (151)
T PRK13883 1 MRKIVLLALLALALGGCAT-SQYGNFV 26 (151)
T ss_pred ChhHHHHHHHHHHHhcccC-CCCCccc
Confidence 8999988887777766663 4444555
No 92
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=32.55 E-value=69 Score=21.14 Aligned_cols=28 Identities=25% Similarity=0.307 Sum_probs=11.0
Q ss_pred CchhHHHHHHHHHHhhcccccCCceEEE
Q 007328 1 MTKIFIFFLFLLTLLASSAQKQKQVYIV 28 (608)
Q Consensus 1 m~~~~~~~l~~~~~~~~~~~~~~~~yiV 28 (608)
||-+.+.+++.++.+..+....++..|+
T Consensus 1 Mk~l~~a~~l~lLal~~a~~~~pG~ViI 28 (36)
T PF08194_consen 1 MKCLSLAFALLLLALAAAVPATPGNVII 28 (36)
T ss_pred CceeHHHHHHHHHHHHhcccCCCCeEEE
Confidence 5554342222222233333333555554
No 93
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=32.37 E-value=44 Score=24.39 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=23.3
Q ss_pred ceeeccchhhHHHHHHHHHH------HHHHhCCCCCHHHHHHHHH
Q 007328 559 KYTIFSGTSMSCPHVAAAAA------LLKAIHPDWSSAAIRSALM 597 (608)
Q Consensus 559 ~y~~~sGTSmAaP~VAG~aA------Ll~q~~p~lt~~~ik~~L~ 597 (608)
+--.+.||=+..=.|....+ -+.+.||.|+.++|+++|.
T Consensus 10 G~P~i~GTRI~v~~i~~~~~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 10 GQPVIRGTRIPVRDILDLLAAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp G--EETTSS-BHHHHHHHHHTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred CcceEcCceecHHHHHHHHHcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 34455566666555555432 3566799999999999885
No 94
>PF11948 DUF3465: Protein of unknown function (DUF3465); InterPro: IPR021856 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 131 to 151 amino acids in length. This protein has a conserved HWTH sequence motif.
Probab=30.53 E-value=65 Score=28.12 Aligned_cols=16 Identities=25% Similarity=0.598 Sum_probs=11.4
Q ss_pred CchhHHHHHHHHHHhh
Q 007328 1 MTKIFIFFLFLLTLLA 16 (608)
Q Consensus 1 m~~~~~~~l~~~~~~~ 16 (608)
||+++.+++++++.++
T Consensus 1 m~~~~~~~~~~~~~~~ 16 (131)
T PF11948_consen 1 MKRFLALFLSVLSAFS 16 (131)
T ss_pred CcchHHHHHHHHHHhc
Confidence 8998877766666554
No 95
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=28.95 E-value=36 Score=18.58 Aligned_cols=11 Identities=36% Similarity=0.688 Sum_probs=4.5
Q ss_pred CchhHHHHHHH
Q 007328 1 MTKIFIFFLFL 11 (608)
Q Consensus 1 m~~~~~~~l~~ 11 (608)
|-|++++++++
T Consensus 1 MMk~vIIlvvL 11 (19)
T PF13956_consen 1 MMKLVIILVVL 11 (19)
T ss_pred CceehHHHHHH
Confidence 33444443333
No 96
>PF14673 DUF4459: Domain of unknown function (DUF4459)
Probab=28.47 E-value=18 Score=29.91 Aligned_cols=19 Identities=26% Similarity=0.607 Sum_probs=15.7
Q ss_pred CchhHHHHHHHHHHhhccc
Q 007328 1 MTKIFIFFLFLLTLLASSA 19 (608)
Q Consensus 1 m~~~~~~~l~~~~~~~~~~ 19 (608)
||++++|+++|+.+++..+
T Consensus 1 mk~~flfifvclfifsana 19 (159)
T PF14673_consen 1 MKNCFLFIFVCLFIFSANA 19 (159)
T ss_pred CceEEeehhhhhhhhcCCc
Confidence 8999999988888877654
No 97
>PF11777 DUF3316: Protein of unknown function (DUF3316); InterPro: IPR016879 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=28.13 E-value=40 Score=28.79 Aligned_cols=15 Identities=33% Similarity=0.390 Sum_probs=9.7
Q ss_pred CchhHHHHHHHHHHh
Q 007328 1 MTKIFIFFLFLLTLL 15 (608)
Q Consensus 1 m~~~~~~~l~~~~~~ 15 (608)
|||++++++++++.+
T Consensus 1 MKk~~ll~~~ll~s~ 15 (114)
T PF11777_consen 1 MKKIILLASLLLLSS 15 (114)
T ss_pred CchHHHHHHHHHHHH
Confidence 899988774444333
No 98
>PF13955 Fst_toxin: Toxin Fst, type I toxin-antitoxin system; PDB: 2KV5_A.
Probab=27.31 E-value=1e+02 Score=17.71 Aligned_cols=18 Identities=22% Similarity=0.196 Sum_probs=14.3
Q ss_pred hhhHHHHHHHHHHHHHHh
Q 007328 566 TSMSCPHVAAAAALLKAI 583 (608)
Q Consensus 566 TSmAaP~VAG~aALl~q~ 583 (608)
+..-+|++.|++-.+.++
T Consensus 2 ~~iIaPi~VGvvl~l~~~ 19 (21)
T PF13955_consen 2 TTIIAPIVVGVVLTLFDH 19 (21)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred ceehhhHHHHHHHHHHHh
Confidence 456799999999877664
No 99
>PF06291 Lambda_Bor: Bor protein; InterPro: IPR010438 This family consists of several Bacteriophage lambda Bor and Escherichia coli Iss proteins. Expression of bor significantly increases the survival of the E. coli host cell in animal serum. This property is a well known bacterial virulence determinant indeed, bor and its adjacent sequences are highly homologous to the iss serum resistance locus of the plasmid ColV2-K94, which confers virulence in animals. It has been suggested that lysogeny may generally have a role in bacterial survival in animal hosts, and perhaps in pathogenesis [].
Probab=27.16 E-value=44 Score=27.65 Aligned_cols=19 Identities=21% Similarity=0.315 Sum_probs=14.1
Q ss_pred CchhHHHHHHHHHHhhccc
Q 007328 1 MTKIFIFFLFLLTLLASSA 19 (608)
Q Consensus 1 m~~~~~~~l~~~~~~~~~~ 19 (608)
|||+++...+++++..++.
T Consensus 1 mKk~ll~~~lallLtgCat 19 (97)
T PF06291_consen 1 MKKLLLAAALALLLTGCAT 19 (97)
T ss_pred CcHHHHHHHHHHHHcccce
Confidence 9999988877776655554
No 100
>PF11920 DUF3438: Protein of unknown function (DUF3438); InterPro: IPR021844 Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=27.01 E-value=57 Score=32.73 Aligned_cols=35 Identities=29% Similarity=0.449 Sum_probs=23.4
Q ss_pred CchhHHHHHHHHHHhhcccccC---------------CceEEEEeCCCCC
Q 007328 1 MTKIFIFFLFLLTLLASSAQKQ---------------KQVYIVHFGGSDN 35 (608)
Q Consensus 1 m~~~~~~~l~~~~~~~~~~~~~---------------~~~yiV~~~~~~~ 35 (608)
|||+++++++++++...+.+.+ .++=||.|+++..
T Consensus 1 mk~~~~~~~l~~~~~~~a~a~E~~~Wer~Pl~V~L~VgqERiV~~~~nVr 50 (288)
T PF11920_consen 1 MKKLLLLLLLLLLLASAAQAVELMKWERIPLAVPLPVGQERIVFFDKNVR 50 (288)
T ss_pred ChhhHHHHHHHHHhcccccchHhhhccCCceeeecCCCcEEEEEcCcCeE
Confidence 8999988887777766655433 4555666665554
No 101
>PRK10053 hypothetical protein; Provisional
Probab=27.00 E-value=40 Score=29.52 Aligned_cols=16 Identities=19% Similarity=0.046 Sum_probs=10.8
Q ss_pred CchhHHHHHHHHHHhh
Q 007328 1 MTKIFIFFLFLLTLLA 16 (608)
Q Consensus 1 m~~~~~~~l~~~~~~~ 16 (608)
|||+++++++++++.+
T Consensus 1 MKK~~~~~~~~~~s~~ 16 (130)
T PRK10053 1 MKLQAIALASFLVMPY 16 (130)
T ss_pred CcHHHHHHHHHHHHHH
Confidence 9998877666555443
No 102
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=26.79 E-value=52 Score=25.67 Aligned_cols=20 Identities=10% Similarity=0.134 Sum_probs=13.7
Q ss_pred CchhHHHHHHHHHHhhcccc
Q 007328 1 MTKIFIFFLFLLTLLASSAQ 20 (608)
Q Consensus 1 m~~~~~~~l~~~~~~~~~~~ 20 (608)
|||++.+++|+++++..+-+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (92)
T TIGR02052 1 MKKLATLLALFVLTSLPAWA 20 (92)
T ss_pred ChhHHHHHHHHHHhcchhhh
Confidence 89998777777666654433
No 103
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=22.89 E-value=28 Score=30.31 Aligned_cols=19 Identities=32% Similarity=0.527 Sum_probs=0.0
Q ss_pred CchhHHHHHHHHHHhhccc
Q 007328 1 MTKIFIFFLFLLTLLASSA 19 (608)
Q Consensus 1 m~~~~~~~l~~~~~~~~~~ 19 (608)
|||++++.+|+++.+++++
T Consensus 1 MKK~ll~~~lllss~sfaA 19 (126)
T PF09403_consen 1 MKKILLLGMLLLSSISFAA 19 (126)
T ss_dssp -------------------
T ss_pred ChHHHHHHHHHHHHHHHHc
Confidence 8998766555555555555
No 104
>PRK09810 entericidin A; Provisional
Probab=22.60 E-value=66 Score=21.95 Aligned_cols=10 Identities=20% Similarity=0.736 Sum_probs=5.8
Q ss_pred CchhHHHHHH
Q 007328 1 MTKIFIFFLF 10 (608)
Q Consensus 1 m~~~~~~~l~ 10 (608)
|||++.++++
T Consensus 2 Mkk~~~l~~~ 11 (41)
T PRK09810 2 MKRLIVLVLL 11 (41)
T ss_pred hHHHHHHHHH
Confidence 6676665543
No 105
>TIGR00156 conserved hypothetical protein TIGR00156. As of the last revision, this family consists only of two proteins from Escherichia coli and one from the related species Haemophilus influenzae.
Probab=21.11 E-value=58 Score=28.34 Aligned_cols=13 Identities=23% Similarity=0.048 Sum_probs=9.4
Q ss_pred CchhHHHHHHHHH
Q 007328 1 MTKIFIFFLFLLT 13 (608)
Q Consensus 1 m~~~~~~~l~~~~ 13 (608)
|||++++++++|+
T Consensus 1 MKK~~~~~~~~l~ 13 (126)
T TIGR00156 1 MKFQAIVLASALV 13 (126)
T ss_pred CchHHHHHHHHHH
Confidence 9998877666444
No 106
>PRK10884 SH3 domain-containing protein; Provisional
Probab=20.68 E-value=72 Score=30.47 Aligned_cols=8 Identities=0% Similarity=-0.105 Sum_probs=4.4
Q ss_pred EEeCCCCC
Q 007328 28 VHFGGSDN 35 (608)
Q Consensus 28 V~~~~~~~ 35 (608)
|.++..+.
T Consensus 34 v~lRsGPg 41 (206)
T PRK10884 34 TYVRSGPG 41 (206)
T ss_pred EEEEcCCC
Confidence 44666555
No 107
>COG0065 LeuC 3-isopropylmalate dehydratase large subunit [Amino acid transport and metabolism]
Probab=20.29 E-value=1e+02 Score=32.31 Aligned_cols=59 Identities=24% Similarity=0.206 Sum_probs=41.4
Q ss_pred CCcccccccCCCCCCCCCCCCCccccCCCcEeecccCCCCCCccccCcccccee-eccchhhHHHHHHHHHHHH
Q 007328 508 APFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYT-IFSGTSMSCPHVAAAAALL 580 (608)
Q Consensus 508 ~~~~~~fSs~Gp~~~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~-~~sGTSmAaP~VAG~aALl 580 (608)
.+-......-||+. -..||+.+||+...|+...+.. ++-+ .-+=|=.++|.+|.++|+.
T Consensus 354 AG~~~~~pgCg~CL----g~~~gvL~~gE~c~STSNRNF~----------GRqG~~~a~~~L~SPA~AAAaAv~ 413 (423)
T COG0065 354 AGFEWREPGCGPCL----GMHPGVLGPGERCASTSNRNFE----------GRQGSPGARTYLASPAMAAAAAVE 413 (423)
T ss_pred cCcEEcCCCCcccc----ccCCCcCCCCCEEeeccCCCCC----------ccCCCCCCeEEecCHHHHHHHHhh
Confidence 35666777888885 5778999999999999766331 1111 2223557889999998874
No 108
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=20.03 E-value=3.8e+02 Score=22.56 Aligned_cols=67 Identities=13% Similarity=0.036 Sum_probs=41.3
Q ss_pred CcceEEEEeeecCCCccCccCCCCCCHHHHHHHHHHHHHCCCcEEEeccCCCCCCCCcc-cHHHHHHHHHHhC-CcEEEE
Q 007328 256 PLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNR-DGIAIGALNAVKH-NILVAC 333 (608)
Q Consensus 256 P~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~SlG~~~~~~~~~-~~~~~~~~~a~~~-Gi~vV~ 333 (608)
++++|+.+- .+.| +....++.-++++.+.|+++|-+|--.....+... --++.......++ |+-||.
T Consensus 36 ~~~elvgf~--~CgG---------Cpg~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~~CP~~~~~~~~I~~~~gi~VV~ 104 (107)
T PF08821_consen 36 EDVELVGFF--TCGG---------CPGRKLVRRIKKLKKNGADVIHLSSCMVKGNPHGPCPHIDEIKKIIEEKFGIEVVE 104 (107)
T ss_pred CCeEEEEEe--eCCC---------CChhHHHHHHHHHHHCCCCEEEEcCCEecCCCCCCCCCHHHHHHHHHHHhCCCEee
Confidence 457777653 4443 88888999999999999999999876543221001 0022222333344 887774
Done!