BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 007329
         (608 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
           (Trigonal Crystal Form)
 pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
           (Orthorombic Crystal Form)
          Length = 136

 Score = 28.9 bits (63), Expect = 8.9,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 49/119 (41%), Gaps = 11/119 (9%)

Query: 74  GSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSV---VSKTMSHLSV 130
           G  ++A++Y     EL+    E A  NL      +  YDE +  +     +    +    
Sbjct: 15  GDYDEAIEYYQKALELDPRSAE-AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWY 73

Query: 131 RLGNAFLSMFVKFGDLGHAWYVFGKMCDRDLFS---WNVLIGGYAKAGFFDEALSLYQR 186
            LGNA+     K GD   A   + K  + D  S   W  L   Y K G +DEA+  YQ+
Sbjct: 74  NLGNAYY----KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 128


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.138    0.422 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,953,061
Number of Sequences: 62578
Number of extensions: 747502
Number of successful extensions: 2266
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2262
Number of HSP's gapped (non-prelim): 7
length of query: 608
length of database: 14,973,337
effective HSP length: 104
effective length of query: 504
effective length of database: 8,465,225
effective search space: 4266473400
effective search space used: 4266473400
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)