Query 007329
Match_columns 608
No_of_seqs 723 out of 3354
Neff 11.4
Searched_HMMs 46136
Date Thu Mar 28 22:06:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007329.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007329hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 6.5E-85 1.4E-89 705.7 63.1 551 57-608 48-600 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 7.2E-82 1.6E-86 682.0 60.6 545 51-600 142-691 (857)
3 PLN03081 pentatricopeptide (PP 100.0 4.8E-72 1E-76 591.3 55.9 470 62-533 89-562 (697)
4 PLN03218 maturation of RBCL 1; 100.0 3.7E-70 8E-75 578.1 57.1 507 91-600 366-916 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 7.3E-68 1.6E-72 560.6 54.9 493 61-560 371-906 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 7E-67 1.5E-71 552.0 52.5 441 158-600 84-528 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 5.4E-33 1.2E-37 308.9 59.3 518 63-591 332-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2.5E-32 5.4E-37 303.6 59.5 522 63-594 298-867 (899)
9 PRK11447 cellulose synthase su 100.0 1.3E-24 2.8E-29 241.7 57.8 529 54-592 56-739 (1157)
10 PRK11447 cellulose synthase su 100.0 5E-23 1.1E-27 229.1 54.8 524 63-593 31-700 (1157)
11 PRK09782 bacteriophage N4 rece 99.9 1.7E-21 3.7E-26 206.9 54.6 229 363-600 476-711 (987)
12 PRK09782 bacteriophage N4 rece 99.9 4.2E-20 9E-25 196.4 51.8 525 54-600 72-745 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 1.9E-20 4.1E-25 176.8 29.8 450 48-575 36-501 (966)
14 KOG4626 O-linked N-acetylgluco 99.9 6.2E-20 1.3E-24 173.3 33.1 425 164-600 51-490 (966)
15 PRK11788 tetratricopeptide rep 99.9 1.6E-19 3.5E-24 179.6 31.0 296 272-600 44-354 (389)
16 KOG2002 TPR-containing nuclear 99.9 1.9E-17 4.1E-22 165.0 43.9 527 63-600 165-750 (1018)
17 PRK11788 tetratricopeptide rep 99.9 9.5E-20 2E-24 181.2 28.3 230 164-397 110-351 (389)
18 TIGR00990 3a0801s09 mitochondr 99.9 2.9E-18 6.3E-23 179.5 40.6 413 164-593 130-571 (615)
19 KOG2002 TPR-containing nuclear 99.9 6.6E-18 1.4E-22 168.2 39.8 512 76-598 146-714 (1018)
20 PRK10049 pgaA outer membrane p 99.9 3.1E-17 6.7E-22 174.8 44.9 388 205-600 23-461 (765)
21 TIGR00990 3a0801s09 mitochondr 99.9 1.8E-17 3.9E-22 173.5 40.8 417 134-560 131-568 (615)
22 KOG4422 Uncharacterized conser 99.8 8.1E-17 1.8E-21 146.0 38.6 436 67-560 122-587 (625)
23 PRK15174 Vi polysaccharide exp 99.8 7.4E-18 1.6E-22 175.6 37.1 316 239-560 49-378 (656)
24 PRK10049 pgaA outer membrane p 99.8 1E-16 2.2E-21 170.9 43.3 429 97-574 17-470 (765)
25 PRK14574 hmsH outer membrane p 99.8 5.4E-16 1.2E-20 161.9 43.9 448 65-570 39-523 (822)
26 PRK15174 Vi polysaccharide exp 99.8 3.8E-17 8.3E-22 170.3 35.5 352 172-531 16-384 (656)
27 PRK14574 hmsH outer membrane p 99.8 6.1E-16 1.3E-20 161.6 43.1 434 139-600 43-518 (822)
28 KOG4422 Uncharacterized conser 99.8 2.2E-15 4.7E-20 136.8 33.0 415 162-594 117-591 (625)
29 KOG2003 TPR repeat-containing 99.8 1.9E-16 4E-21 144.7 23.9 496 60-600 162-694 (840)
30 KOG0495 HAT repeat protein [RN 99.7 3.8E-12 8.2E-17 122.2 47.7 499 79-599 365-884 (913)
31 KOG2076 RNA polymerase III tra 99.7 2.3E-13 5E-18 135.5 38.6 526 70-600 149-774 (895)
32 KOG0495 HAT repeat protein [RN 99.7 3.4E-11 7.3E-16 115.8 50.1 419 168-594 413-847 (913)
33 KOG2076 RNA polymerase III tra 99.7 3.9E-12 8.4E-17 126.9 42.1 532 56-593 169-849 (895)
34 KOG4318 Bicoid mRNA stability 99.7 1.7E-13 3.7E-18 135.6 31.9 492 81-595 11-596 (1088)
35 KOG0547 Translocase of outer m 99.6 4.2E-12 9.1E-17 117.9 31.9 401 164-592 118-565 (606)
36 KOG2003 TPR repeat-containing 99.6 1E-12 2.2E-17 120.6 27.2 442 63-513 204-708 (840)
37 PRK10747 putative protoheme IX 99.6 5.6E-12 1.2E-16 124.1 31.1 215 373-592 162-389 (398)
38 PRK10747 putative protoheme IX 99.6 2.2E-12 4.7E-17 127.0 27.8 279 276-560 97-387 (398)
39 PF13429 TPR_15: Tetratricopep 99.6 1.9E-14 4E-19 135.4 11.2 250 338-592 13-276 (280)
40 TIGR00540 hemY_coli hemY prote 99.6 1E-11 2.2E-16 123.1 30.8 220 371-592 160-398 (409)
41 TIGR00540 hemY_coli hemY prote 99.6 3.4E-12 7.4E-17 126.4 27.3 282 275-560 96-396 (409)
42 KOG1915 Cell cycle control pro 99.5 7.1E-10 1.5E-14 102.9 38.6 411 72-492 85-534 (677)
43 PF13429 TPR_15: Tetratricopep 99.5 4.7E-14 1E-18 132.7 11.4 253 270-525 15-274 (280)
44 KOG1915 Cell cycle control pro 99.5 8.7E-10 1.9E-14 102.3 38.2 424 94-528 72-536 (677)
45 KOG4318 Bicoid mRNA stability 99.5 6.4E-11 1.4E-15 117.8 33.0 167 402-575 462-641 (1088)
46 KOG1155 Anaphase-promoting com 99.5 3.1E-10 6.8E-15 105.0 34.4 253 272-526 236-493 (559)
47 KOG1155 Anaphase-promoting com 99.5 1.9E-11 4.1E-16 112.9 26.1 370 227-607 159-550 (559)
48 KOG1126 DNA-binding cell divis 99.5 2.9E-12 6.2E-17 123.9 21.4 200 398-599 420-626 (638)
49 KOG1173 Anaphase-promoting com 99.5 1.6E-10 3.5E-15 109.7 30.5 266 331-600 242-523 (611)
50 COG3071 HemY Uncharacterized e 99.5 2.3E-10 5E-15 104.2 30.1 284 276-593 97-390 (400)
51 KOG1126 DNA-binding cell divis 99.5 1E-11 2.2E-16 120.2 21.3 277 110-396 334-623 (638)
52 KOG0547 Translocase of outer m 99.5 2.2E-10 4.8E-15 106.7 28.8 398 65-492 120-564 (606)
53 KOG2047 mRNA splicing factor [ 99.4 2.3E-08 5.1E-13 96.6 42.2 174 62-244 104-293 (835)
54 COG3071 HemY Uncharacterized e 99.4 4.1E-10 8.9E-15 102.7 27.4 276 244-526 96-388 (400)
55 KOG1173 Anaphase-promoting com 99.4 1.4E-08 3.1E-13 96.8 35.6 282 262-572 243-530 (611)
56 KOG3785 Uncharacterized conser 99.4 5.3E-09 1.2E-13 93.6 30.4 453 137-607 29-504 (557)
57 COG2956 Predicted N-acetylgluc 99.4 1.4E-09 3E-14 96.3 25.9 216 174-392 48-277 (389)
58 COG2956 Predicted N-acetylgluc 99.4 6.2E-10 1.3E-14 98.4 23.4 215 109-326 49-277 (389)
59 KOG2047 mRNA splicing factor [ 99.3 4.4E-08 9.6E-13 94.7 36.9 454 130-593 102-651 (835)
60 KOG2376 Signal recognition par 99.3 7E-08 1.5E-12 92.6 38.0 451 63-562 15-519 (652)
61 KOG2376 Signal recognition par 99.3 3.2E-08 6.9E-13 94.9 33.1 409 168-600 19-492 (652)
62 KOG3785 Uncharacterized conser 99.3 3.5E-08 7.6E-13 88.5 31.0 447 67-532 29-494 (557)
63 TIGR02521 type_IV_pilW type IV 99.3 1.1E-09 2.4E-14 100.5 22.7 189 402-592 34-231 (234)
64 KOG1174 Anaphase-promoting com 99.3 2.9E-08 6.2E-13 90.9 30.3 301 295-600 191-505 (564)
65 PF13041 PPR_2: PPR repeat fam 99.3 1.3E-11 2.8E-16 80.9 6.2 50 362-411 1-50 (50)
66 PF13041 PPR_2: PPR repeat fam 99.3 1.8E-11 4E-16 80.2 6.6 50 261-310 1-50 (50)
67 KOG4162 Predicted calmodulin-b 99.3 1.1E-07 2.4E-12 94.2 35.3 489 73-593 240-783 (799)
68 KOG1156 N-terminal acetyltrans 99.2 2.2E-07 4.7E-12 90.4 35.1 438 107-590 19-508 (700)
69 TIGR02521 type_IV_pilW type IV 99.2 3E-09 6.6E-14 97.6 22.1 193 365-560 32-229 (234)
70 KOG1840 Kinesin light chain [C 99.2 1.3E-08 2.9E-13 99.9 26.4 198 369-591 246-477 (508)
71 PRK12370 invasion protein regu 99.2 3.2E-09 7E-14 109.4 22.9 209 378-594 318-536 (553)
72 KOG1156 N-terminal acetyltrans 99.2 6.3E-07 1.4E-11 87.2 36.2 448 67-525 14-508 (700)
73 KOG1129 TPR repeat-containing 99.2 2.2E-09 4.8E-14 94.9 18.0 229 366-599 225-462 (478)
74 KOG0985 Vesicle coat protein c 99.2 3.5E-07 7.6E-12 93.0 35.4 347 196-587 983-1335(1666)
75 PRK12370 invasion protein regu 99.2 4.1E-09 9E-14 108.7 23.0 262 93-365 254-538 (553)
76 KOG3617 WD40 and TPR repeat-co 99.2 8.7E-07 1.9E-11 88.3 36.6 29 565-593 1331-1359(1416)
77 KOG1129 TPR repeat-containing 99.1 1.4E-09 3.1E-14 96.2 14.4 220 337-560 227-455 (478)
78 KOG0985 Vesicle coat protein c 99.1 4.2E-06 9E-11 85.5 39.8 119 465-590 1104-1246(1666)
79 PF12569 NARP1: NMDA receptor- 99.1 2.1E-07 4.7E-12 92.7 30.4 251 138-394 12-292 (517)
80 KOG3616 Selective LIM binding 99.1 8.7E-07 1.9E-11 87.2 32.8 459 68-589 452-962 (1636)
81 PF12569 NARP1: NMDA receptor- 99.1 1.2E-07 2.5E-12 94.6 27.7 124 468-592 197-333 (517)
82 COG3063 PilF Tfp pilus assembl 99.0 1.5E-07 3.3E-12 79.8 21.4 195 402-600 38-241 (250)
83 KOG1840 Kinesin light chain [C 99.0 7.8E-08 1.7E-12 94.6 22.5 229 198-426 200-477 (508)
84 KOG1174 Anaphase-promoting com 99.0 9.8E-06 2.1E-10 74.8 33.1 261 262-560 231-497 (564)
85 KOG4162 Predicted calmodulin-b 99.0 4.8E-06 1E-10 83.0 32.7 219 70-291 294-541 (799)
86 PRK11189 lipoprotein NlpI; Pro 99.0 2E-07 4.3E-12 87.9 22.6 185 402-592 67-264 (296)
87 KOG3616 Selective LIM binding 99.0 1.1E-05 2.4E-10 79.7 34.2 338 204-586 564-904 (1636)
88 COG3063 PilF Tfp pilus assembl 99.0 3E-07 6.5E-12 78.0 20.5 199 367-568 38-244 (250)
89 KOG4340 Uncharacterized conser 98.9 8E-07 1.7E-11 78.1 23.1 282 134-424 14-335 (459)
90 PRK11189 lipoprotein NlpI; Pro 98.9 6.4E-07 1.4E-11 84.5 23.6 122 301-425 67-191 (296)
91 KOG1127 TPR repeat-containing 98.9 7.4E-06 1.6E-10 83.8 30.3 506 76-592 474-1066(1238)
92 KOG3617 WD40 and TPR repeat-co 98.8 2.6E-05 5.6E-10 78.2 31.7 112 132-259 860-994 (1416)
93 PF04733 Coatomer_E: Coatomer 98.8 8.3E-08 1.8E-12 89.0 13.9 77 515-592 183-264 (290)
94 cd05804 StaR_like StaR_like; a 98.8 1.6E-05 3.4E-10 78.1 30.7 55 539-593 269-336 (355)
95 KOG4340 Uncharacterized conser 98.8 1E-05 2.3E-10 71.3 25.2 319 63-390 13-372 (459)
96 PF04733 Coatomer_E: Coatomer 98.8 2.1E-07 4.6E-12 86.3 15.5 246 307-560 10-262 (290)
97 KOG0548 Molecular co-chaperone 98.8 2.8E-05 6E-10 74.6 29.3 217 367-593 227-455 (539)
98 PRK04841 transcriptional regul 98.8 1.6E-05 3.4E-10 88.7 32.1 352 242-593 351-760 (903)
99 KOG1127 TPR repeat-containing 98.8 3.7E-05 7.9E-10 79.0 30.7 469 111-585 474-1028(1238)
100 KOG0548 Molecular co-chaperone 98.7 8.5E-06 1.8E-10 78.0 24.0 217 301-529 227-456 (539)
101 cd05804 StaR_like StaR_like; a 98.7 2.5E-05 5.5E-10 76.7 28.7 194 63-259 9-213 (355)
102 PF12854 PPR_1: PPR repeat 98.7 3.3E-08 7.1E-13 57.9 4.0 33 227-259 2-34 (34)
103 PRK04841 transcriptional regul 98.7 3.4E-05 7.4E-10 86.1 30.6 257 272-528 461-760 (903)
104 KOG1128 Uncharacterized conser 98.6 8.6E-06 1.9E-10 80.8 21.7 217 329-560 394-613 (777)
105 KOG2053 Mitochondrial inherita 98.6 0.0012 2.6E-08 67.7 40.6 155 402-560 439-605 (932)
106 KOG0624 dsRNA-activated protei 98.6 4.8E-05 1E-09 68.7 23.5 312 262-600 37-375 (504)
107 PRK10370 formate-dependent nit 98.6 5.6E-06 1.2E-10 72.5 17.0 115 478-593 52-173 (198)
108 TIGR03302 OM_YfiO outer membra 98.6 3.9E-06 8.4E-11 76.8 16.6 178 398-593 32-232 (235)
109 KOG0624 dsRNA-activated protei 98.5 0.00032 6.9E-09 63.5 27.2 323 130-531 38-373 (504)
110 PF12854 PPR_1: PPR repeat 98.5 1.3E-07 2.8E-12 55.4 3.8 32 429-460 2-33 (34)
111 KOG1070 rRNA processing protei 98.5 1E-05 2.2E-10 85.8 19.7 204 399-602 1458-1672(1710)
112 PRK15359 type III secretion sy 98.5 2.6E-06 5.7E-11 70.4 12.6 92 468-560 27-118 (144)
113 KOG1125 TPR repeat-containing 98.5 3.4E-06 7.3E-11 81.4 14.3 220 342-589 294-523 (579)
114 KOG1125 TPR repeat-containing 98.4 7.7E-06 1.7E-10 79.0 15.6 214 309-526 296-525 (579)
115 PLN02789 farnesyltranstransfer 98.4 0.00015 3.2E-09 68.5 24.1 218 370-591 43-300 (320)
116 COG5010 TadD Flp pilus assembl 98.4 2.8E-05 6.2E-10 67.8 17.5 150 440-590 72-228 (257)
117 COG4783 Putative Zn-dependent 98.4 0.00017 3.7E-09 68.8 23.0 198 348-567 252-462 (484)
118 KOG1914 mRNA cleavage and poly 98.4 0.0026 5.6E-08 61.5 35.3 145 415-560 347-498 (656)
119 PRK15359 type III secretion sy 98.4 6.3E-06 1.4E-10 68.2 12.1 109 486-600 14-126 (144)
120 KOG3081 Vesicle coat complex C 98.4 7.5E-05 1.6E-09 65.2 18.5 141 405-552 114-259 (299)
121 KOG1128 Uncharacterized conser 98.4 6.6E-06 1.4E-10 81.6 13.7 210 369-593 403-616 (777)
122 KOG1070 rRNA processing protei 98.4 8.3E-05 1.8E-09 79.2 21.5 194 332-560 1457-1660(1710)
123 PRK14720 transcript cleavage f 98.3 0.00026 5.6E-09 74.8 24.6 148 400-575 117-268 (906)
124 PRK10370 formate-dependent nit 98.3 4.5E-05 9.7E-10 66.9 16.3 113 447-560 52-170 (198)
125 COG5010 TadD Flp pilus assembl 98.3 5.1E-05 1.1E-09 66.3 15.7 156 403-560 70-228 (257)
126 TIGR02552 LcrH_SycD type III s 98.3 1.8E-05 3.9E-10 65.2 12.6 109 488-600 6-119 (135)
127 COG4783 Putative Zn-dependent 98.3 0.00014 3E-09 69.4 19.5 136 443-593 315-454 (484)
128 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 2.5E-05 5.5E-10 75.1 13.9 124 436-560 171-294 (395)
129 KOG2053 Mitochondrial inherita 98.2 0.0097 2.1E-07 61.4 45.6 219 69-293 18-256 (932)
130 TIGR03302 OM_YfiO outer membra 98.2 8.5E-05 1.8E-09 68.0 16.8 59 335-393 35-99 (235)
131 PLN02789 farnesyltranstransfer 98.2 0.00032 7E-09 66.2 20.3 187 405-593 43-250 (320)
132 PRK15179 Vi polysaccharide bio 98.2 0.00015 3.3E-09 75.7 19.6 140 430-570 82-228 (694)
133 PF09976 TPR_21: Tetratricopep 98.2 8.5E-05 1.8E-09 61.8 14.2 113 478-590 24-144 (145)
134 KOG3081 Vesicle coat complex C 98.1 0.00047 1E-08 60.4 18.3 150 238-393 114-271 (299)
135 PRK15179 Vi polysaccharide bio 98.1 0.00013 2.8E-09 76.2 17.7 197 373-577 58-268 (694)
136 KOG1914 mRNA cleavage and poly 98.1 0.0098 2.1E-07 57.7 34.2 180 380-560 347-536 (656)
137 TIGR00756 PPR pentatricopeptid 98.1 4.9E-06 1.1E-10 49.6 4.2 34 265-298 2-35 (35)
138 PRK14720 transcript cleavage f 98.1 0.00085 1.8E-08 71.0 23.1 80 199-291 118-197 (906)
139 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 8E-05 1.7E-09 71.7 13.8 123 134-259 173-295 (395)
140 TIGR00756 PPR pentatricopeptid 98.1 7.6E-06 1.6E-10 48.8 4.5 34 566-599 2-35 (35)
141 KOG3060 Uncharacterized conser 98.1 0.00064 1.4E-08 59.1 17.5 182 377-560 25-217 (289)
142 PF13812 PPR_3: Pentatricopept 98.0 1.1E-05 2.4E-10 47.6 4.2 33 264-296 2-34 (34)
143 PF13812 PPR_3: Pentatricopept 98.0 1.5E-05 3.3E-10 47.0 4.6 33 565-597 2-34 (34)
144 TIGR02552 LcrH_SycD type III s 97.9 0.00018 3.9E-09 59.2 11.8 92 468-560 20-111 (135)
145 KOG3060 Uncharacterized conser 97.9 0.0055 1.2E-07 53.5 20.3 183 345-530 24-222 (289)
146 PF09976 TPR_21: Tetratricopep 97.9 0.0008 1.7E-08 55.9 14.5 122 164-288 15-143 (145)
147 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00045 9.8E-09 55.2 12.0 98 501-600 4-110 (119)
148 KOG2041 WD40 repeat protein [G 97.8 0.018 4E-07 57.6 23.7 197 297-522 851-1080(1189)
149 PRK15363 pathogenicity island 97.8 0.0012 2.5E-08 53.9 13.1 98 462-560 32-129 (157)
150 PF01535 PPR: PPR repeat; Int 97.7 4.3E-05 9.3E-10 43.9 3.4 30 265-294 2-31 (31)
151 PF12895 Apc3: Anaphase-promot 97.7 0.00011 2.4E-09 54.4 6.2 77 513-589 3-83 (84)
152 PF01535 PPR: PPR repeat; Int 97.7 4.6E-05 9.9E-10 43.8 3.1 31 565-595 1-31 (31)
153 cd00189 TPR Tetratricopeptide 97.7 0.00046 9.9E-09 52.4 9.8 87 505-592 6-96 (100)
154 PF04840 Vps16_C: Vps16, C-ter 97.7 0.053 1.1E-06 51.3 27.3 119 438-572 181-299 (319)
155 KOG2280 Vacuolar assembly/sort 97.7 0.089 1.9E-06 53.5 27.0 76 443-523 693-768 (829)
156 cd00189 TPR Tetratricopeptide 97.7 0.00059 1.3E-08 51.7 10.1 92 468-560 3-94 (100)
157 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.0015 3.3E-08 52.1 12.7 94 467-560 4-102 (119)
158 PLN03088 SGT1, suppressor of 97.6 0.00074 1.6E-08 65.5 11.9 89 471-560 8-96 (356)
159 KOG1538 Uncharacterized conser 97.6 0.034 7.4E-07 55.2 22.6 264 162-492 557-844 (1081)
160 PRK15363 pathogenicity island 97.6 0.001 2.2E-08 54.3 10.5 100 499-599 35-139 (157)
161 PRK02603 photosystem I assembl 97.6 0.0019 4.1E-08 55.6 12.9 62 467-528 37-101 (172)
162 PF04840 Vps16_C: Vps16, C-ter 97.5 0.084 1.8E-06 50.0 24.9 109 335-459 179-287 (319)
163 KOG0553 TPR repeat-containing 97.5 0.00052 1.1E-08 61.4 8.8 126 473-599 89-221 (304)
164 PLN03088 SGT1, suppressor of 97.5 0.0018 3.9E-08 62.8 13.3 91 441-531 9-102 (356)
165 PF08579 RPM2: Mitochondrial r 97.5 0.0018 4E-08 48.8 10.0 79 368-446 29-116 (120)
166 PF12895 Apc3: Anaphase-promot 97.5 0.0002 4.2E-09 53.0 5.0 80 478-559 2-83 (84)
167 KOG0553 TPR repeat-containing 97.5 0.0011 2.4E-08 59.4 10.1 93 444-539 91-187 (304)
168 PF08579 RPM2: Mitochondrial r 97.5 0.0015 3.3E-08 49.2 9.1 80 266-345 28-116 (120)
169 PF05843 Suf: Suppressor of fo 97.5 0.0027 5.8E-08 59.3 13.2 126 467-593 3-136 (280)
170 KOG2280 Vacuolar assembly/sort 97.4 0.17 3.8E-06 51.5 26.4 136 89-225 426-574 (829)
171 PF13432 TPR_16: Tetratricopep 97.4 0.00057 1.2E-08 47.6 6.6 58 540-599 3-64 (65)
172 PF10037 MRP-S27: Mitochondria 97.4 0.0012 2.7E-08 63.9 10.6 116 231-346 65-186 (429)
173 PF14938 SNAP: Soluble NSF att 97.4 0.0081 1.7E-07 56.4 15.8 125 342-466 123-269 (282)
174 PF14938 SNAP: Soluble NSF att 97.4 0.12 2.7E-06 48.4 23.4 160 167-368 100-272 (282)
175 PF07079 DUF1347: Protein of u 97.4 0.15 3.2E-06 48.9 33.5 218 368-590 265-521 (549)
176 KOG0550 Molecular chaperone (D 97.4 0.063 1.4E-06 50.6 20.3 287 67-394 56-351 (486)
177 PRK02603 photosystem I assembl 97.3 0.005 1.1E-07 52.9 12.6 80 436-515 37-122 (172)
178 KOG0550 Molecular chaperone (D 97.3 0.016 3.4E-07 54.5 16.0 270 269-560 55-347 (486)
179 PF14559 TPR_19: Tetratricopep 97.3 0.0012 2.5E-08 46.4 7.0 58 511-569 3-63 (68)
180 PF10037 MRP-S27: Mitochondria 97.3 0.002 4.2E-08 62.6 10.4 111 337-447 70-186 (429)
181 PF05843 Suf: Suppressor of fo 97.3 0.0039 8.5E-08 58.2 12.1 129 162-292 2-136 (280)
182 CHL00033 ycf3 photosystem I as 97.2 0.0046 9.9E-08 52.9 11.2 62 467-528 37-101 (168)
183 PF06239 ECSIT: Evolutionarily 97.2 0.0034 7.4E-08 53.8 9.8 97 353-449 34-153 (228)
184 CHL00033 ycf3 photosystem I as 97.2 0.0074 1.6E-07 51.6 11.7 102 499-600 35-154 (168)
185 PF13414 TPR_11: TPR repeat; P 97.1 0.0015 3.3E-08 46.0 6.2 60 534-593 3-67 (69)
186 PRK10153 DNA-binding transcrip 97.1 0.02 4.3E-07 58.2 15.9 61 533-593 419-482 (517)
187 PF06239 ECSIT: Evolutionarily 97.1 0.0037 8E-08 53.6 8.9 89 260-348 44-153 (228)
188 PRK10866 outer membrane biogen 97.1 0.19 4.1E-06 45.8 20.3 58 167-227 38-99 (243)
189 PRK10803 tol-pal system protei 97.0 0.011 2.3E-07 54.3 12.1 97 502-600 146-251 (263)
190 COG4700 Uncharacterized protei 97.0 0.076 1.7E-06 44.2 15.5 127 128-256 87-217 (251)
191 PF12688 TPR_5: Tetratrico pep 97.0 0.026 5.7E-07 44.4 12.6 104 471-574 7-116 (120)
192 COG4235 Cytochrome c biogenesi 97.0 0.026 5.6E-07 51.2 13.7 99 494-593 151-256 (287)
193 PRK10866 outer membrane biogen 97.0 0.12 2.6E-06 47.0 18.0 75 65-139 37-113 (243)
194 KOG1538 Uncharacterized conser 96.9 0.18 4E-06 50.4 19.8 86 300-394 749-847 (1081)
195 COG4700 Uncharacterized protei 96.9 0.076 1.6E-06 44.3 14.5 91 470-560 94-186 (251)
196 PF13432 TPR_16: Tetratricopep 96.9 0.0042 9.1E-08 43.1 6.7 57 472-528 4-60 (65)
197 PRK10153 DNA-binding transcrip 96.9 0.046 9.9E-07 55.7 16.2 61 498-560 419-479 (517)
198 PF13414 TPR_11: TPR repeat; P 96.9 0.0032 6.9E-08 44.3 5.9 61 467-527 5-66 (69)
199 PF14559 TPR_19: Tetratricopep 96.9 0.0018 3.9E-08 45.5 4.6 53 545-599 2-58 (68)
200 PF13424 TPR_12: Tetratricopep 96.8 0.003 6.6E-08 45.8 5.6 57 536-592 7-74 (78)
201 PF12688 TPR_5: Tetratrico pep 96.8 0.025 5.4E-07 44.6 10.8 106 66-171 7-116 (120)
202 COG4235 Cytochrome c biogenesi 96.8 0.017 3.7E-07 52.3 11.0 96 464-560 155-253 (287)
203 PF07079 DUF1347: Protein of u 96.8 0.55 1.2E-05 45.2 37.5 204 363-571 297-532 (549)
204 PF13371 TPR_9: Tetratricopept 96.8 0.0055 1.2E-07 43.7 6.5 57 542-600 3-63 (73)
205 KOG1130 Predicted G-alpha GTPa 96.7 0.0021 4.5E-08 60.0 4.7 130 467-596 197-347 (639)
206 KOG2796 Uncharacterized conser 96.7 0.072 1.6E-06 47.0 13.7 128 365-492 178-313 (366)
207 KOG2041 WD40 repeat protein [G 96.7 0.89 1.9E-05 46.2 27.1 41 145-187 678-718 (1189)
208 KOG2796 Uncharacterized conser 96.7 0.12 2.6E-06 45.7 14.6 138 264-403 178-323 (366)
209 KOG1130 Predicted G-alpha GTPa 96.7 0.011 2.3E-07 55.4 8.7 128 401-528 197-344 (639)
210 PF13371 TPR_9: Tetratricopept 96.5 0.015 3.1E-07 41.5 7.2 52 508-560 4-55 (73)
211 PF13525 YfiO: Outer membrane 96.5 0.2 4.3E-06 44.3 15.8 68 63-130 8-77 (203)
212 KOG2114 Vacuolar assembly/sort 96.5 0.95 2.1E-05 47.2 21.9 51 471-524 711-761 (933)
213 KOG1920 IkappaB kinase complex 96.5 1.3 2.9E-05 48.1 23.5 95 442-562 960-1054(1265)
214 PRK15331 chaperone protein Sic 96.4 0.092 2E-06 43.3 11.9 88 472-560 44-131 (165)
215 PF13281 DUF4071: Domain of un 96.4 0.29 6.4E-06 46.8 17.0 29 565-593 306-334 (374)
216 PRK15331 chaperone protein Sic 96.2 0.033 7.1E-07 45.9 8.3 88 504-592 42-133 (165)
217 PRK10803 tol-pal system protei 96.2 0.086 1.9E-06 48.4 11.8 93 468-560 146-243 (263)
218 COG3898 Uncharacterized membra 96.1 1.3 2.8E-05 41.9 26.1 255 297-560 117-389 (531)
219 PF13424 TPR_12: Tetratricopep 96.1 0.025 5.4E-07 40.9 6.4 60 467-526 7-73 (78)
220 PF13525 YfiO: Outer membrane 95.9 1.1 2.4E-05 39.6 18.2 58 169-226 13-71 (203)
221 KOG2114 Vacuolar assembly/sort 95.9 2.7 5.9E-05 44.0 24.9 117 134-259 338-458 (933)
222 PF04053 Coatomer_WDAD: Coatom 95.8 0.28 6.1E-06 48.8 14.5 161 169-360 269-429 (443)
223 COG3898 Uncharacterized membra 95.8 1.8 3.9E-05 41.0 26.9 22 306-327 271-292 (531)
224 PF03704 BTAD: Bacterial trans 95.8 0.06 1.3E-06 44.7 8.4 70 468-537 65-139 (146)
225 PF04053 Coatomer_WDAD: Coatom 95.7 0.41 8.9E-06 47.7 15.1 160 66-258 267-428 (443)
226 PLN03098 LPA1 LOW PSII ACCUMUL 95.7 0.085 1.8E-06 51.2 9.9 63 60-124 75-141 (453)
227 PLN03098 LPA1 LOW PSII ACCUMUL 95.7 0.13 2.9E-06 49.9 11.2 63 465-528 75-141 (453)
228 PF13281 DUF4071: Domain of un 95.7 0.67 1.5E-05 44.5 15.5 73 338-410 146-228 (374)
229 PF10300 DUF3808: Protein of u 95.6 2.9 6.4E-05 42.4 21.1 158 166-326 193-375 (468)
230 PF03704 BTAD: Bacterial trans 95.6 0.09 1.9E-06 43.7 8.6 69 164-234 65-138 (146)
231 PF12921 ATP13: Mitochondrial 95.5 0.13 2.9E-06 40.9 8.7 49 159-207 50-98 (126)
232 KOG1585 Protein required for f 95.4 0.6 1.3E-05 41.1 12.8 140 435-587 92-250 (308)
233 KOG0543 FKBP-type peptidyl-pro 95.4 0.11 2.4E-06 49.2 9.2 94 466-560 258-352 (397)
234 PF12921 ATP13: Mitochondrial 95.3 0.16 3.5E-06 40.5 8.6 51 193-243 48-99 (126)
235 PRK11906 transcriptional regul 95.3 0.45 9.8E-06 46.4 13.0 139 449-589 273-432 (458)
236 PF13512 TPR_18: Tetratricopep 95.0 1.3 2.8E-05 35.8 12.9 78 472-549 17-97 (142)
237 COG1729 Uncharacterized protei 94.9 0.42 9.1E-06 43.0 10.9 88 511-600 153-249 (262)
238 smart00299 CLH Clathrin heavy 94.8 1.5 3.3E-05 35.9 13.8 43 63-106 10-52 (140)
239 KOG3941 Intermediate in Toll s 94.8 0.25 5.3E-06 44.3 8.9 110 251-360 53-186 (406)
240 KOG3941 Intermediate in Toll s 94.7 0.28 6.1E-06 43.9 9.3 110 352-461 53-186 (406)
241 COG0457 NrfG FOG: TPR repeat [ 94.7 3.1 6.6E-05 37.4 22.9 195 365-592 60-264 (291)
242 KOG1585 Protein required for f 94.7 2.8 6.1E-05 37.1 14.9 89 294-390 23-117 (308)
243 PF08631 SPO22: Meiosis protei 94.7 3.8 8.3E-05 38.3 22.4 155 436-591 86-273 (278)
244 KOG4555 TPR repeat-containing 94.6 0.43 9.2E-06 37.4 8.8 87 474-560 52-141 (175)
245 KOG0543 FKBP-type peptidyl-pro 94.6 0.47 1E-05 45.1 10.9 94 499-593 257-355 (397)
246 PF09205 DUF1955: Domain of un 94.5 1.2 2.6E-05 35.1 10.9 137 274-431 13-152 (161)
247 KOG1941 Acetylcholine receptor 94.4 1.2 2.5E-05 41.7 12.7 23 501-523 164-186 (518)
248 COG3118 Thioredoxin domain-con 94.4 0.99 2.2E-05 41.1 12.1 132 444-578 144-286 (304)
249 PF13428 TPR_14: Tetratricopep 94.4 0.095 2.1E-06 32.7 4.3 33 566-600 3-35 (44)
250 PF09205 DUF1955: Domain of un 94.4 1.1 2.4E-05 35.3 10.5 139 376-531 14-152 (161)
251 KOG2066 Vacuolar assembly/sort 94.2 8.2 0.00018 40.3 21.7 45 235-279 395-439 (846)
252 PF09613 HrpB1_HrpK: Bacterial 94.0 1.5 3.3E-05 36.2 11.4 17 544-560 54-70 (160)
253 PF13428 TPR_14: Tetratricopep 94.0 0.17 3.6E-06 31.6 4.8 24 537-560 4-27 (44)
254 PF00637 Clathrin: Region in C 93.9 0.022 4.7E-07 47.2 0.8 86 100-188 12-97 (143)
255 smart00299 CLH Clathrin heavy 93.9 2.4 5.1E-05 34.8 12.9 84 470-560 12-95 (140)
256 PF10300 DUF3808: Protein of u 93.7 3.9 8.4E-05 41.5 16.4 158 368-527 192-375 (468)
257 KOG2610 Uncharacterized conser 93.7 6.1 0.00013 36.8 15.5 111 347-459 117-234 (491)
258 PF07035 Mic1: Colon cancer-as 93.6 2.7 5.8E-05 35.3 12.4 135 80-225 14-148 (167)
259 KOG4555 TPR repeat-containing 93.6 0.78 1.7E-05 35.9 8.4 88 507-595 51-146 (175)
260 KOG0991 Replication factor C, 93.4 1.6 3.4E-05 38.3 10.9 52 556-608 230-283 (333)
261 PF13176 TPR_7: Tetratricopept 93.3 0.097 2.1E-06 30.9 2.7 26 566-591 1-26 (36)
262 COG1747 Uncharacterized N-term 93.1 10 0.00022 37.7 18.2 179 56-242 62-249 (711)
263 COG3118 Thioredoxin domain-con 92.9 7.4 0.00016 35.7 17.3 141 408-551 143-289 (304)
264 COG1729 Uncharacterized protei 92.8 0.67 1.4E-05 41.8 8.2 94 132-226 144-244 (262)
265 COG4105 ComL DNA uptake lipopr 92.7 7.3 0.00016 35.0 17.6 179 130-326 35-232 (254)
266 PF07719 TPR_2: Tetratricopept 92.4 0.45 9.7E-06 27.4 4.8 32 565-598 2-33 (34)
267 TIGR02561 HrpB1_HrpK type III 92.4 3.1 6.7E-05 33.8 10.6 48 512-560 23-70 (153)
268 KOG2610 Uncharacterized conser 92.4 9.3 0.0002 35.6 15.0 111 175-287 117-233 (491)
269 KOG1941 Acetylcholine receptor 92.4 1.4 3.1E-05 41.1 9.9 89 503-591 126-233 (518)
270 PF13431 TPR_17: Tetratricopep 92.4 0.14 3.1E-06 29.7 2.4 21 533-553 12-32 (34)
271 PF13512 TPR_18: Tetratricopep 92.3 3.8 8.3E-05 33.2 11.1 81 63-143 13-95 (142)
272 PF00515 TPR_1: Tetratricopept 92.3 0.46 9.9E-06 27.4 4.6 32 565-598 2-33 (34)
273 COG4649 Uncharacterized protei 92.2 1.5 3.2E-05 36.5 8.7 49 141-189 69-122 (221)
274 PF13170 DUF4003: Protein of u 92.0 2.6 5.6E-05 39.6 11.5 76 482-557 160-240 (297)
275 PF04097 Nic96: Nup93/Nic96; 91.7 20 0.00044 37.9 23.3 50 160-211 110-159 (613)
276 PF04184 ST7: ST7 protein; In 91.6 16 0.00034 36.4 19.0 57 470-526 264-322 (539)
277 KOG1258 mRNA processing protei 91.6 17 0.00038 36.9 32.0 127 132-260 47-179 (577)
278 PF13170 DUF4003: Protein of u 91.3 9 0.0002 36.0 14.3 50 77-126 79-134 (297)
279 PRK11906 transcriptional regul 91.2 4.3 9.3E-05 39.9 12.3 145 414-560 273-433 (458)
280 PF04097 Nic96: Nup93/Nic96; 91.1 8 0.00017 40.9 15.3 86 339-427 264-355 (613)
281 COG5107 RNA14 Pre-mRNA 3'-end 90.9 17 0.00037 35.5 33.3 128 400-528 398-531 (660)
282 KOG2062 26S proteasome regulat 90.8 23 0.0005 37.0 20.8 26 200-225 213-238 (929)
283 KOG1258 mRNA processing protei 90.8 21 0.00045 36.4 30.3 98 70-168 89-189 (577)
284 PF13176 TPR_7: Tetratricopept 90.5 0.48 1E-05 27.9 3.4 25 536-560 1-25 (36)
285 PF04184 ST7: ST7 protein; In 90.4 16 0.00036 36.3 15.2 148 63-224 171-322 (539)
286 PF08631 SPO22: Meiosis protei 90.1 16 0.00036 34.1 22.0 159 400-559 85-271 (278)
287 KOG1920 IkappaB kinase complex 90.0 36 0.00077 37.9 23.0 114 438-560 912-1025(1265)
288 KOG0276 Vesicle coat complex C 89.9 2.8 6.1E-05 42.1 9.8 153 69-258 595-747 (794)
289 PF10602 RPN7: 26S proteasome 89.8 2.6 5.7E-05 36.1 8.7 92 469-560 40-139 (177)
290 KOG4570 Uncharacterized conser 89.8 3.9 8.4E-05 37.6 9.9 102 327-429 58-165 (418)
291 COG5107 RNA14 Pre-mRNA 3'-end 89.3 23 0.0005 34.7 31.2 126 434-560 397-528 (660)
292 PF04910 Tcf25: Transcriptiona 89.2 23 0.0005 34.5 17.1 55 506-560 110-165 (360)
293 PF09613 HrpB1_HrpK: Bacterial 89.1 4.8 0.0001 33.4 9.2 18 444-461 54-71 (160)
294 KOG1586 Protein required for f 88.9 16 0.00035 32.3 12.8 16 577-592 167-182 (288)
295 KOG4234 TPR repeat-containing 88.8 8.7 0.00019 33.0 10.6 87 473-560 103-194 (271)
296 COG3629 DnrI DNA-binding trans 88.7 2.8 6.1E-05 38.5 8.4 65 536-600 155-228 (280)
297 PRK09687 putative lyase; Provi 88.6 21 0.00045 33.4 25.9 36 370-408 241-276 (280)
298 PF00637 Clathrin: Region in C 88.6 1.4 2.9E-05 36.4 6.1 86 269-361 13-98 (143)
299 TIGR02508 type_III_yscG type I 88.4 5.2 0.00011 29.8 7.9 86 111-201 21-106 (115)
300 PF13374 TPR_10: Tetratricopep 88.4 1.3 2.9E-05 26.8 4.6 28 565-592 3-30 (42)
301 PF13174 TPR_6: Tetratricopept 88.4 0.95 2.1E-05 25.7 3.6 30 567-598 3-32 (33)
302 KOG0276 Vesicle coat complex C 88.3 11 0.00023 38.3 12.4 151 173-360 598-748 (794)
303 COG4649 Uncharacterized protei 88.2 14 0.00031 30.9 13.8 48 445-492 69-121 (221)
304 KOG2066 Vacuolar assembly/sort 88.2 38 0.00083 35.8 27.3 171 168-365 363-537 (846)
305 PRK11619 lytic murein transgly 88.1 40 0.00086 35.9 35.9 410 67-523 40-463 (644)
306 COG3629 DnrI DNA-binding trans 87.9 3.8 8.2E-05 37.7 8.7 73 471-543 159-236 (280)
307 KOG4648 Uncharacterized conser 87.7 1.1 2.3E-05 41.5 5.1 43 444-486 107-152 (536)
308 COG0457 NrfG FOG: TPR repeat [ 87.7 20 0.00043 31.9 27.3 94 333-427 59-158 (291)
309 COG4455 ImpE Protein of avirul 87.6 3.4 7.4E-05 35.9 7.7 77 467-543 3-81 (273)
310 KOG0403 Neoplastic transformat 87.4 30 0.00066 33.8 19.8 71 337-411 513-586 (645)
311 PF07035 Mic1: Colon cancer-as 87.4 16 0.00036 30.7 15.0 134 419-593 14-149 (167)
312 PRK09687 putative lyase; Provi 87.2 26 0.00056 32.8 25.4 57 533-593 205-263 (280)
313 PF13929 mRNA_stabil: mRNA sta 86.8 23 0.00049 32.7 12.8 60 228-287 198-262 (292)
314 PF10602 RPN7: 26S proteasome 86.8 7.8 0.00017 33.2 9.7 92 500-591 37-140 (177)
315 KOG4570 Uncharacterized conser 86.4 4.4 9.5E-05 37.3 8.1 99 226-328 58-165 (418)
316 KOG1464 COP9 signalosome, subu 86.3 25 0.00055 31.8 13.1 172 348-520 42-252 (440)
317 PF02259 FAT: FAT domain; Int 85.8 36 0.00078 33.1 21.0 53 305-361 5-57 (352)
318 PRK11619 lytic murein transgly 85.7 53 0.0012 35.0 36.1 114 377-492 254-373 (644)
319 PF13431 TPR_17: Tetratricopep 85.5 1.2 2.5E-05 25.8 2.8 25 561-585 10-34 (34)
320 PF06552 TOM20_plant: Plant sp 85.1 17 0.00037 30.8 10.3 72 516-594 52-137 (186)
321 cd00923 Cyt_c_Oxidase_Va Cytoc 85.1 11 0.00024 28.0 8.1 61 75-137 22-83 (103)
322 PF13181 TPR_8: Tetratricopept 84.5 2.2 4.8E-05 24.4 3.8 28 566-593 3-30 (34)
323 COG2909 MalT ATP-dependent tra 84.2 66 0.0014 34.8 26.0 54 375-428 469-526 (894)
324 PF00515 TPR_1: Tetratricopept 84.0 3.2 7E-05 23.7 4.4 26 502-527 4-29 (34)
325 PF07719 TPR_2: Tetratricopept 83.4 1.9 4.2E-05 24.6 3.2 24 537-560 4-27 (34)
326 COG1747 Uncharacterized N-term 83.4 52 0.0011 33.0 18.3 167 330-501 63-241 (711)
327 PF07163 Pex26: Pex26 protein; 83.2 8.5 0.00018 35.0 8.3 117 68-184 43-181 (309)
328 PF10345 Cohesin_load: Cohesin 83.1 69 0.0015 34.1 34.8 52 540-592 541-605 (608)
329 COG2976 Uncharacterized protei 83.0 30 0.00064 29.9 13.3 89 506-594 96-189 (207)
330 TIGR02508 type_III_yscG type I 82.9 13 0.00028 27.9 7.6 51 542-594 47-98 (115)
331 PF02284 COX5A: Cytochrome c o 82.8 8 0.00017 29.1 6.7 63 75-138 25-87 (108)
332 KOG4234 TPR repeat-containing 82.6 13 0.00029 31.9 8.8 91 507-599 103-201 (271)
333 PF11663 Toxin_YhaV: Toxin wit 82.2 0.99 2.1E-05 35.6 2.0 36 573-608 104-139 (140)
334 TIGR03504 FimV_Cterm FimV C-te 82.2 3.1 6.6E-05 25.8 3.8 26 569-594 4-29 (44)
335 PF02259 FAT: FAT domain; Int 82.1 51 0.0011 32.0 19.5 65 363-427 145-212 (352)
336 COG4105 ComL DNA uptake lipopr 82.0 39 0.00085 30.6 22.9 182 373-593 43-233 (254)
337 cd00923 Cyt_c_Oxidase_Va Cytoc 81.6 13 0.00027 27.7 7.2 59 382-441 25-83 (103)
338 PF02284 COX5A: Cytochrome c o 80.7 13 0.00028 28.0 7.1 60 382-442 28-87 (108)
339 PF07721 TPR_4: Tetratricopept 80.6 3.1 6.7E-05 22.2 3.1 18 540-557 7-24 (26)
340 COG3947 Response regulator con 80.3 49 0.0011 30.6 12.3 58 234-291 281-341 (361)
341 PF13374 TPR_10: Tetratricopep 80.0 2.8 6.1E-05 25.2 3.3 26 535-560 3-28 (42)
342 KOG4648 Uncharacterized conser 79.8 6.2 0.00014 36.8 6.5 77 472-557 104-181 (536)
343 COG4785 NlpI Lipoprotein NlpI, 79.3 44 0.00094 29.4 15.4 59 434-492 99-160 (297)
344 PF11207 DUF2989: Protein of u 78.9 13 0.00028 32.2 7.7 78 172-252 118-198 (203)
345 PF10345 Cohesin_load: Cohesin 77.9 1E+02 0.0022 32.9 35.2 191 128-325 28-252 (608)
346 PF11207 DUF2989: Protein of u 76.2 24 0.00051 30.7 8.5 72 482-554 123-198 (203)
347 TIGR02561 HrpB1_HrpK type III 75.7 43 0.00094 27.5 11.5 63 412-476 23-87 (153)
348 PF13181 TPR_8: Tetratricopept 75.0 4.7 0.0001 22.9 3.1 24 537-560 4-27 (34)
349 KOG1550 Extracellular protein 74.7 1.2E+02 0.0025 31.9 20.4 148 177-328 228-394 (552)
350 PF07163 Pex26: Pex26 protein; 74.5 25 0.00055 32.1 8.5 86 168-255 90-181 (309)
351 PF09477 Type_III_YscG: Bacter 74.0 27 0.00059 26.6 7.2 77 514-593 21-98 (116)
352 KOG2063 Vacuolar assembly/sort 73.9 1.5E+02 0.0032 32.7 16.0 59 63-123 310-374 (877)
353 COG4455 ImpE Protein of avirul 73.6 24 0.00052 30.9 7.9 60 164-225 4-63 (273)
354 KOG1550 Extracellular protein 72.8 1.3E+02 0.0028 31.6 18.9 271 314-593 228-538 (552)
355 smart00028 TPR Tetratricopepti 71.6 7.8 0.00017 20.9 3.5 27 566-592 3-29 (34)
356 PF09477 Type_III_YscG: Bacter 71.4 37 0.0008 25.9 7.4 79 110-191 21-99 (116)
357 PF13762 MNE1: Mitochondrial s 69.8 57 0.0012 26.8 8.9 77 133-210 42-128 (145)
358 KOG1464 COP9 signalosome, subu 69.4 91 0.002 28.4 14.8 152 268-420 70-252 (440)
359 KOG4507 Uncharacterized conser 69.4 19 0.00042 36.5 7.3 122 450-573 589-719 (886)
360 PHA02875 ankyrin repeat protei 69.2 1.1E+02 0.0025 30.5 13.4 79 170-257 8-90 (413)
361 PF07064 RIC1: RIC1; InterPro 68.6 98 0.0021 28.5 14.4 159 59-226 81-249 (258)
362 PF07575 Nucleopor_Nup85: Nup8 68.6 1.4E+02 0.003 31.6 14.1 75 384-460 390-464 (566)
363 KOG0890 Protein kinase of the 68.5 3E+02 0.0064 34.0 23.8 59 400-461 1671-1729(2382)
364 PHA02875 ankyrin repeat protei 68.2 1E+02 0.0022 30.9 12.8 24 67-94 6-29 (413)
365 KOG2422 Uncharacterized conser 68.1 1.5E+02 0.0033 30.5 14.6 52 509-560 352-404 (665)
366 PF13929 mRNA_stabil: mRNA sta 67.8 1.1E+02 0.0023 28.6 19.1 111 246-356 142-261 (292)
367 PRK15180 Vi polysaccharide bio 67.7 39 0.00084 33.4 8.8 128 445-573 300-434 (831)
368 PRK15180 Vi polysaccharide bio 67.6 1.4E+02 0.003 29.9 26.4 122 204-328 296-421 (831)
369 PF13762 MNE1: Mitochondrial s 67.0 70 0.0015 26.2 11.4 80 235-314 42-131 (145)
370 KOG0890 Protein kinase of the 67.0 3.2E+02 0.0069 33.8 29.9 82 236-322 1424-1507(2382)
371 cd08819 CARD_MDA5_2 Caspase ac 65.4 39 0.00085 24.7 6.4 65 217-283 22-86 (88)
372 PF08424 NRDE-2: NRDE-2, neces 65.3 1.3E+02 0.0029 28.8 14.3 116 484-600 50-191 (321)
373 TIGR03504 FimV_Cterm FimV C-te 64.6 14 0.00029 23.0 3.5 25 66-90 5-29 (44)
374 PF09986 DUF2225: Uncharacteri 64.3 88 0.0019 27.9 10.0 60 501-560 120-191 (214)
375 PF14689 SPOB_a: Sensor_kinase 64.1 18 0.00039 24.5 4.4 27 566-592 25-51 (62)
376 PF11848 DUF3368: Domain of un 64.0 27 0.00058 22.2 4.9 37 67-103 9-45 (48)
377 KOG2297 Predicted translation 63.8 1.3E+02 0.0028 28.2 13.0 72 312-384 269-341 (412)
378 cd08819 CARD_MDA5_2 Caspase ac 63.6 49 0.0011 24.2 6.5 64 420-485 23-86 (88)
379 PF14853 Fis1_TPR_C: Fis1 C-te 62.8 25 0.00053 22.9 4.6 29 570-600 7-35 (53)
380 COG2909 MalT ATP-dependent tra 61.7 2.5E+02 0.0054 30.7 25.0 220 243-462 426-687 (894)
381 KOG4077 Cytochrome c oxidase, 61.6 39 0.00085 26.6 6.1 50 75-124 64-113 (149)
382 PF06552 TOM20_plant: Plant sp 61.2 53 0.0011 28.0 7.4 48 551-600 52-114 (186)
383 PRK10941 hypothetical protein; 60.5 86 0.0019 29.1 9.5 56 503-559 185-240 (269)
384 COG3947 Response regulator con 59.8 1.5E+02 0.0032 27.6 14.7 69 469-537 283-356 (361)
385 PRK10941 hypothetical protein; 58.5 70 0.0015 29.6 8.6 61 538-600 185-249 (269)
386 PF13934 ELYS: Nuclear pore co 58.2 1.3E+02 0.0028 27.0 10.1 52 135-187 113-166 (226)
387 PF00244 14-3-3: 14-3-3 protei 57.5 1.2E+02 0.0026 27.6 9.8 57 370-426 7-64 (236)
388 PF14669 Asp_Glu_race_2: Putat 57.5 1.3E+02 0.0028 26.1 12.8 22 367-388 184-205 (233)
389 PF12862 Apc5: Anaphase-promot 57.1 55 0.0012 24.4 6.5 17 510-526 9-25 (94)
390 PF10366 Vps39_1: Vacuolar sor 56.7 54 0.0012 25.3 6.4 27 366-392 41-67 (108)
391 PF06957 COPI_C: Coatomer (COP 55.2 48 0.001 32.8 7.2 42 566-607 302-346 (422)
392 KOG1586 Protein required for f 55.2 1.6E+02 0.0034 26.5 14.2 19 511-529 166-184 (288)
393 PF10366 Vps39_1: Vacuolar sor 54.5 99 0.0021 23.9 8.6 27 265-291 41-67 (108)
394 PF04190 DUF410: Protein of un 54.1 1.8E+02 0.004 26.8 16.4 158 345-528 2-170 (260)
395 PF13934 ELYS: Nuclear pore co 53.3 1.7E+02 0.0037 26.3 13.5 116 467-593 78-198 (226)
396 PF11846 DUF3366: Domain of un 53.2 57 0.0012 28.4 7.0 32 561-592 141-172 (193)
397 PF04190 DUF410: Protein of un 53.2 1.9E+02 0.0041 26.7 16.7 142 272-428 19-170 (260)
398 PF10579 Rapsyn_N: Rapsyn N-te 53.1 21 0.00045 25.5 3.2 45 477-521 18-65 (80)
399 PF12862 Apc5: Anaphase-promot 52.7 70 0.0015 23.8 6.4 53 475-527 8-69 (94)
400 cd00280 TRFH Telomeric Repeat 52.0 70 0.0015 27.3 6.6 48 76-123 85-139 (200)
401 COG4785 NlpI Lipoprotein NlpI, 52.0 1.7E+02 0.0037 25.9 17.1 157 130-292 99-266 (297)
402 KOG4077 Cytochrome c oxidase, 51.7 1.1E+02 0.0024 24.3 7.1 45 383-427 68-112 (149)
403 PRK13800 putative oxidoreducta 51.4 4.1E+02 0.0088 30.1 24.7 256 251-527 623-880 (897)
404 KOG4642 Chaperone-dependent E3 50.8 1.9E+02 0.0042 26.1 9.4 116 444-560 20-143 (284)
405 PLN03025 replication factor C 50.7 1.2E+02 0.0027 29.0 9.4 97 482-600 161-260 (319)
406 PRK10564 maltose regulon perip 50.5 30 0.00064 32.2 4.7 37 63-99 260-296 (303)
407 COG5159 RPN6 26S proteasome re 50.0 2.2E+02 0.0047 26.5 10.8 118 473-590 11-151 (421)
408 KOG2659 LisH motif-containing 49.4 1.9E+02 0.0042 25.8 9.9 20 506-525 71-90 (228)
409 KOG1308 Hsp70-interacting prot 49.4 26 0.00056 33.1 4.2 86 446-532 126-215 (377)
410 PF11848 DUF3368: Domain of un 49.3 66 0.0014 20.4 5.1 33 274-306 13-45 (48)
411 PF10579 Rapsyn_N: Rapsyn N-te 49.0 43 0.00093 24.0 4.2 41 546-586 18-65 (80)
412 PF11846 DUF3366: Domain of un 48.7 51 0.0011 28.8 5.9 54 173-226 120-173 (193)
413 PRK13342 recombination factor 48.6 2.9E+02 0.0064 27.6 14.6 100 396-513 173-279 (413)
414 PF11838 ERAP1_C: ERAP1-like C 48.2 1.4E+02 0.0031 28.5 9.6 77 481-560 146-227 (324)
415 PF10255 Paf67: RNA polymerase 48.0 81 0.0017 31.2 7.5 91 470-560 80-190 (404)
416 KOG4507 Uncharacterized conser 47.9 1.9E+02 0.0041 29.9 9.9 148 295-445 568-721 (886)
417 KOG4567 GTPase-activating prot 47.6 2.3E+02 0.0049 26.7 9.6 42 284-325 264-305 (370)
418 PF12554 MOZART1: Mitotic-spin 47.2 30 0.00066 21.9 3.0 35 571-605 11-45 (48)
419 PRK08691 DNA polymerase III su 47.1 2.5E+02 0.0053 30.3 11.2 99 482-600 181-281 (709)
420 COG0735 Fur Fe2+/Zn2+ uptake r 46.9 1E+02 0.0023 25.3 7.1 63 82-145 8-70 (145)
421 PRK14963 DNA polymerase III su 46.7 2.7E+02 0.0058 28.8 11.4 33 567-600 245-277 (504)
422 PF09670 Cas_Cas02710: CRISPR- 46.4 3E+02 0.0066 27.2 11.6 59 65-124 136-198 (379)
423 PF09670 Cas_Cas02710: CRISPR- 46.4 3E+02 0.0066 27.2 11.7 53 475-527 141-197 (379)
424 PRK13342 recombination factor 45.9 3.3E+02 0.0071 27.3 15.3 101 295-413 173-279 (413)
425 KOG4567 GTPase-activating prot 44.9 2.1E+02 0.0045 26.9 8.9 80 384-468 263-352 (370)
426 COG5159 RPN6 26S proteasome re 44.7 2.6E+02 0.0057 26.0 17.3 52 269-320 9-67 (421)
427 PF14689 SPOB_a: Sensor_kinase 44.7 26 0.00056 23.7 2.7 22 370-391 29-50 (62)
428 PF12968 DUF3856: Domain of Un 44.7 1.4E+02 0.003 23.6 6.6 56 535-590 56-126 (144)
429 PRK14956 DNA polymerase III su 44.6 3.7E+02 0.0079 27.6 11.8 97 485-600 186-284 (484)
430 PF08311 Mad3_BUB1_I: Mad3/BUB 44.3 1.6E+02 0.0035 23.5 9.7 43 517-559 81-124 (126)
431 KOG2063 Vacuolar assembly/sort 44.1 4.9E+02 0.011 28.9 19.3 28 265-292 506-533 (877)
432 KOG2300 Uncharacterized conser 44.0 3.6E+02 0.0078 27.3 33.3 154 373-526 332-512 (629)
433 KOG0686 COP9 signalosome, subu 43.8 3.3E+02 0.0071 26.8 12.4 59 233-291 151-215 (466)
434 TIGR02270 conserved hypothetic 43.5 3.5E+02 0.0076 27.1 24.5 44 231-274 99-142 (410)
435 PF11663 Toxin_YhaV: Toxin wit 43.3 31 0.00067 27.6 3.2 34 474-509 104-138 (140)
436 KOG4642 Chaperone-dependent E3 42.0 2.7E+02 0.0058 25.3 9.1 115 409-525 20-143 (284)
437 KOG0687 26S proteasome regulat 41.6 2.3E+02 0.0051 26.9 8.8 156 211-375 36-233 (393)
438 PF11817 Foie-gras_1: Foie gra 41.6 95 0.0021 28.4 6.8 53 539-591 183-245 (247)
439 PRK10564 maltose regulon perip 41.5 54 0.0012 30.6 4.9 39 265-303 259-297 (303)
440 TIGR01503 MthylAspMut_E methyl 41.4 1.2E+02 0.0026 30.3 7.4 49 175-227 68-116 (480)
441 PF07575 Nucleopor_Nup85: Nup8 41.1 4.6E+02 0.0099 27.7 22.5 25 61-85 149-173 (566)
442 KOG0376 Serine-threonine phosp 41.1 43 0.00094 33.2 4.5 53 476-529 15-68 (476)
443 cd00280 TRFH Telomeric Repeat 41.1 1.5E+02 0.0032 25.5 6.9 20 541-560 118-137 (200)
444 KOG1114 Tripeptidyl peptidase 41.0 5.5E+02 0.012 28.6 12.4 48 501-548 1233-1281(1304)
445 cd08326 CARD_CASP9 Caspase act 40.4 1.2E+02 0.0025 22.2 5.7 37 244-280 42-78 (84)
446 PF14853 Fis1_TPR_C: Fis1 C-te 40.4 1E+02 0.0023 20.1 5.0 20 541-560 8-27 (53)
447 PRK06645 DNA polymerase III su 40.2 4.3E+02 0.0092 27.4 11.6 43 484-528 192-236 (507)
448 KOG0376 Serine-threonine phosp 39.8 51 0.0011 32.8 4.7 99 506-607 11-115 (476)
449 PF07064 RIC1: RIC1; InterPro 39.7 3.1E+02 0.0067 25.3 15.8 85 440-529 159-250 (258)
450 PF10255 Paf67: RNA polymerase 39.6 1E+02 0.0022 30.5 6.8 95 433-527 74-192 (404)
451 KOG2659 LisH motif-containing 39.5 1.9E+02 0.004 25.9 7.6 94 430-523 22-127 (228)
452 PF08311 Mad3_BUB1_I: Mad3/BUB 39.5 2E+02 0.0043 23.0 9.1 43 382-424 81-124 (126)
453 cd08326 CARD_CASP9 Caspase act 39.2 1E+02 0.0022 22.5 5.2 39 142-180 42-80 (84)
454 KOG3364 Membrane protein invol 38.5 2.2E+02 0.0047 23.2 8.7 65 496-560 29-97 (149)
455 smart00804 TAP_C C-terminal do 37.7 32 0.0007 23.4 2.2 25 174-198 38-62 (63)
456 PF11768 DUF3312: Protein of u 37.5 2.9E+02 0.0064 28.4 9.6 58 235-292 411-473 (545)
457 KOG1924 RhoA GTPase effector D 37.1 41 0.0009 35.4 3.8 7 294-300 797-803 (1102)
458 PRK14958 DNA polymerase III su 37.0 5E+02 0.011 27.0 11.9 88 493-600 194-281 (509)
459 PRK12798 chemotaxis protein; R 36.6 4.4E+02 0.0095 26.2 18.3 146 447-593 125-286 (421)
460 PF12926 MOZART2: Mitotic-spin 36.2 1.7E+02 0.0037 21.4 6.9 42 420-461 29-70 (88)
461 PRK09857 putative transposase; 36.2 1.9E+02 0.0041 27.3 7.9 63 539-601 211-277 (292)
462 PF11838 ERAP1_C: ERAP1-like C 35.5 4E+02 0.0086 25.4 15.6 80 213-292 146-230 (324)
463 PRK14951 DNA polymerase III su 35.1 5.2E+02 0.011 27.6 11.5 44 483-528 187-232 (618)
464 PF10963 DUF2765: Protein of u 34.3 88 0.0019 22.7 4.1 64 529-598 11-76 (83)
465 KOG4279 Serine/threonine prote 34.1 5.6E+02 0.012 27.7 11.0 57 368-427 205-271 (1226)
466 KOG0292 Vesicle coat complex C 34.0 4.5E+02 0.0098 28.9 10.5 177 174-393 606-782 (1202)
467 PRK06645 DNA polymerase III su 33.9 3.8E+02 0.0083 27.7 10.1 102 178-298 190-292 (507)
468 KOG3364 Membrane protein invol 33.9 2.6E+02 0.0056 22.7 8.3 68 531-600 29-105 (149)
469 PRK07764 DNA polymerase III su 33.8 5.8E+02 0.013 28.4 12.0 32 493-526 195-226 (824)
470 smart00101 14_3_3 14-3-3 homol 33.8 3.7E+02 0.0081 24.5 15.1 53 373-425 10-65 (244)
471 PF11817 Foie-gras_1: Foie gra 33.5 1.6E+02 0.0035 26.9 7.0 51 471-521 184-240 (247)
472 KOG0292 Vesicle coat complex C 33.0 1.4E+02 0.003 32.5 6.7 131 444-594 653-783 (1202)
473 TIGR02270 conserved hypothetic 32.9 5.2E+02 0.011 25.9 23.3 58 230-288 159-216 (410)
474 COG5108 RPO41 Mitochondrial DN 32.8 2.9E+02 0.0062 29.2 8.7 47 303-349 33-81 (1117)
475 COG0735 Fur Fe2+/Zn2+ uptake r 32.7 2.3E+02 0.005 23.3 7.0 32 269-300 26-57 (145)
476 COG5108 RPO41 Mitochondrial DN 32.6 2.4E+02 0.0053 29.6 8.2 71 470-543 33-112 (1117)
477 PRK14958 DNA polymerase III su 32.6 5.9E+02 0.013 26.5 11.6 98 180-298 183-280 (509)
478 PRK11639 zinc uptake transcrip 32.4 1.9E+02 0.0042 24.5 6.7 37 312-348 39-75 (169)
479 KOG1114 Tripeptidyl peptidase 31.9 7.7E+02 0.017 27.6 14.0 52 261-312 1229-1281(1304)
480 PF11768 DUF3312: Protein of u 31.8 2.2E+02 0.0048 29.3 7.7 56 134-189 412-472 (545)
481 PF02847 MA3: MA3 domain; Int 31.6 1E+02 0.0023 23.8 4.7 21 471-491 8-28 (113)
482 KOG2396 HAT (Half-A-TPR) repea 31.6 5.8E+02 0.013 26.1 32.0 96 495-592 455-558 (568)
483 PF14669 Asp_Glu_race_2: Putat 31.4 3.5E+02 0.0077 23.5 15.1 98 454-560 96-207 (233)
484 PRK08691 DNA polymerase III su 30.8 6.5E+02 0.014 27.3 11.3 100 177-297 180-279 (709)
485 PRK07914 hypothetical protein; 30.4 3.3E+02 0.0071 26.1 8.8 25 576-600 207-231 (320)
486 COG2976 Uncharacterized protei 29.9 3.8E+02 0.0083 23.4 17.9 57 237-293 131-189 (207)
487 PF03943 TAP_C: TAP C-terminal 29.6 29 0.00062 22.4 0.9 24 174-197 26-49 (51)
488 COG1466 HolA DNA polymerase II 29.5 4.3E+02 0.0093 25.5 9.4 75 523-600 151-244 (334)
489 KOG2908 26S proteasome regulat 29.4 4.4E+02 0.0096 25.3 8.6 51 477-527 87-143 (380)
490 cd07153 Fur_like Ferric uptake 29.3 1.2E+02 0.0026 23.6 4.7 46 66-111 6-51 (116)
491 PF04090 RNA_pol_I_TF: RNA pol 29.1 1.3E+02 0.0027 26.4 5.0 27 63-89 44-70 (199)
492 PF00244 14-3-3: 14-3-3 protei 29.0 4.4E+02 0.0096 23.9 9.2 59 268-326 6-65 (236)
493 PF12926 MOZART2: Mitotic-spin 28.9 2.4E+02 0.0051 20.7 7.4 41 520-560 29-69 (88)
494 smart00638 LPD_N Lipoprotein N 28.8 7.2E+02 0.016 26.3 21.6 60 231-292 309-369 (574)
495 PF02847 MA3: MA3 domain; Int 28.2 2.8E+02 0.006 21.3 7.3 60 236-295 6-69 (113)
496 KOG4521 Nuclear pore complex, 28.0 9.8E+02 0.021 27.6 14.0 59 402-460 986-1047(1480)
497 KOG1839 Uncharacterized protei 27.6 7.8E+02 0.017 28.6 11.6 151 408-558 941-1123(1236)
498 KOG2391 Vacuolar sorting prote 27.4 5.5E+02 0.012 24.5 12.3 29 163-191 301-329 (365)
499 PRK06585 holA DNA polymerase I 27.3 3.3E+02 0.007 26.4 8.3 24 577-600 224-247 (343)
500 smart00544 MA3 Domain in DAP-5 27.1 2.9E+02 0.0063 21.2 9.1 23 470-492 7-29 (113)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6.5e-85 Score=705.74 Aligned_cols=551 Identities=71% Similarity=1.215 Sum_probs=540.6
Q ss_pred CCCCcchHHHHHHHHhCCChHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHH
Q 007329 57 SIATKNPNSRLNELCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAF 136 (608)
Q Consensus 57 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 136 (608)
+.+...+|.++.+|++.|++++|+.+|+.|.+.|+.|+..+|..++.+|.+.+.++.|.+++..+.+.++.++..++|++
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 33445599999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCChhhHHHHHcccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhH
Q 007329 137 LSMFVKFGDLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRG 216 (608)
Q Consensus 137 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 216 (608)
+.+|++.|+++.|+++|++|++||..+||.+|.+|++.|++++|+++|++|.+.| +.||..||+.++++|+..++++.+
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g-~~Pd~~t~~~ll~~~~~~~~~~~~ 206 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAG-VRPDVYTFPCVLRTCGGIPDLARG 206 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCChhHHHHHHHHhCCccchhhH
Confidence 9999999999999999999999999999999999999999999999999999887 999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 007329 217 KEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDP 296 (608)
Q Consensus 217 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 296 (608)
.+++..|.+.|+.||..+++.|+.+|++.|++++|.++|++|..+|..+||++|.+|++.|++++|+++|++|...|+.|
T Consensus 207 ~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~P 286 (857)
T PLN03077 207 REVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDP 286 (857)
T ss_pred HHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHc
Q 007329 297 DFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVVSWTTMISCYEG 376 (608)
Q Consensus 297 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 376 (608)
|..||+.++.+|++.|+.+.+.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|..+|..+||.+|.+|++
T Consensus 287 d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~ 366 (857)
T PLN03077 287 DLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEK 366 (857)
T ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHH
Q 007329 377 SVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEV 456 (608)
Q Consensus 377 ~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 456 (608)
.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.++..+|+.|+++|+++|++++|.++
T Consensus 367 ~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~v 446 (857)
T PLN03077 367 NGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEV 446 (857)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccH
Q 007329 457 FHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFL 536 (608)
Q Consensus 457 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 536 (608)
|++|.++|+.+|+++|.+|++.|+.++|+++|++|..++.||..||+.++.+|++.|+++.+.+++..+.+.|+.+|..+
T Consensus 447 f~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~ 526 (857)
T PLN03077 447 FHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFL 526 (857)
T ss_pred HHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCcccee
Confidence 99999999999999999999999999999999999988999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHhcCCHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch--hhhhcccC
Q 007329 537 PNALLDMYVRCGRMKPAWNQFNSNERDVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL--MGLFRKCQ 608 (608)
Q Consensus 537 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~~ac~ 608 (608)
+++|+++|+++|++++|.++|+.+.+|.++|+++|.+|.+.|+.++|.++|++|.+.|+.||.+ ..++.+|.
T Consensus 527 ~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~ 600 (857)
T PLN03077 527 PNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACS 600 (857)
T ss_pred chHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999 77888874
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=7.2e-82 Score=682.02 Aligned_cols=545 Identities=29% Similarity=0.445 Sum_probs=527.0
Q ss_pred hhhhcCCCCCcc-hHHHHHHHHhCCChHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcc
Q 007329 51 NTQNTSSIATKN-PNSRLNELCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLS 129 (608)
Q Consensus 51 ~~~~~~~~~~~~-~~~ll~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 129 (608)
..++.++.++.. ||.+|.+|++.|++++|+++|++|...|+.||..+|+.++++|+..+++..+.+++..+.+.|..||
T Consensus 142 ~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~ 221 (857)
T PLN03077 142 YVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELD 221 (857)
T ss_pred HHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcc
Confidence 445667767666 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhHHHHHhhhcCChhhHHHHHcccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcC
Q 007329 130 VRLGNAFLSMFVKFGDLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGG 209 (608)
Q Consensus 130 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~ 209 (608)
..++|.|+.+|+++|++++|.++|++|+++|..+||++|.+|++.|++++|+++|++|.+.| +.||..||+.++.+|++
T Consensus 222 ~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g-~~Pd~~ty~~ll~a~~~ 300 (857)
T PLN03077 222 VDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELS-VDPDLMTITSVISACEL 300 (857)
T ss_pred cchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCChhHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999887 99999999999999999
Q ss_pred CCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHH
Q 007329 210 VPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMM 289 (608)
Q Consensus 210 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 289 (608)
.|+++.|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|..+|..+||.+|.+|++.|++++|+++|++|
T Consensus 301 ~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M 380 (857)
T PLN03077 301 LGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALM 380 (857)
T ss_pred cCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCCCChhhHHH
Q 007329 290 REVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVVSWTT 369 (608)
Q Consensus 290 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 369 (608)
.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.++..+|+.|+++|++.|++++|.++|++|.++|.++|+.
T Consensus 381 ~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~ 460 (857)
T PLN03077 381 EQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTS 460 (857)
T ss_pred HHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCC
Q 007329 370 MISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKC 449 (608)
Q Consensus 370 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 449 (608)
+|.+|++.|+.++|+.+|++|.. ++.||..||..++.+|++.|+++.+.+++..+.+.|+.++..++++|+++|+++|+
T Consensus 461 mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~ 539 (857)
T PLN03077 461 IIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGR 539 (857)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCC
Confidence 99999999999999999999986 59999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhH-hCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH-H
Q 007329 450 IDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMM-LNLKPNSVTLVSILSACARIGALMCGKEIHAHAL-R 527 (608)
Q Consensus 450 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~-~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~ 527 (608)
+++|.++|+.+ .+|+.+||++|.+|+++|+.++|+++|++|. .|+.||..||+.++.+|.+.|++++|.++|+.|. +
T Consensus 540 ~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~ 618 (857)
T PLN03077 540 MNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEK 618 (857)
T ss_pred HHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHH
Confidence 99999999999 8999999999999999999999999999999 8999999999999999999999999999999999 7
Q ss_pred hCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 528 IGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN--ERDVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 528 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
.|+.|+..+|++++++|++.|++++|.+++++| +||..+|++|+.+|..+|+.+.+....+++.+ +.|++.
T Consensus 619 ~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~ 691 (857)
T PLN03077 619 YSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFE--LDPNSV 691 (857)
T ss_pred hCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCc
Confidence 899999999999999999999999999999999 99999999999998877777777777777765 366654
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.8e-72 Score=591.28 Aligned_cols=470 Identities=27% Similarity=0.430 Sum_probs=455.7
Q ss_pred chHHHHHHHHhCCChHHHHHHHHHHhhcC-CCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHh
Q 007329 62 NPNSRLNELCLNGSLEQALKYLDSMQELN-ICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMF 140 (608)
Q Consensus 62 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~g-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (608)
.|+.+|..|.+.|++++|+++|+.|...+ ..||..+|+.++.+|.+.++++.|.+++..|.+.|+.||..+||.++.+|
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y 168 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMH 168 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 59999999999999999999999998764 78999999999999999999999999999999999999999999999999
Q ss_pred hhcCChhhHHHHHcccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHH
Q 007329 141 VKFGDLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVH 220 (608)
Q Consensus 141 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 220 (608)
++.|++++|.++|++|++||..+||.+|.+|++.|++++|+++|++|.+.| +.||..||+.++.+|+..|..+.+.+++
T Consensus 169 ~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g-~~p~~~t~~~ll~a~~~~~~~~~~~~l~ 247 (697)
T PLN03081 169 VKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDG-SDAEPRTFVVMLRASAGLGSARAGQQLH 247 (697)
T ss_pred hcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCChhhHHHHHHHHhcCCcHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999887 9999999999999999999999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhH
Q 007329 221 VHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMT 300 (608)
Q Consensus 221 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 300 (608)
..+.+.|+.+|..+|+.|+++|+++|++++|.++|++|.++|+++||.+|.+|++.|++++|.++|++|.+.|+.||..|
T Consensus 248 ~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t 327 (697)
T PLN03081 248 CCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFT 327 (697)
T ss_pred HHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHcCCCc
Q 007329 301 LSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVVSWTTMISCYEGSVLP 380 (608)
Q Consensus 301 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~ 380 (608)
|+.++.+|++.|+++.|.+++..|.+.|+.||..+|+.|+++|+++|++++|.++|++|.++|..+||+||.+|++.|+.
T Consensus 328 ~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~ 407 (697)
T PLN03081 328 FSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRG 407 (697)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH-hCCCCchhHHHHHHHHhHhcCCHHHHHHHHcc
Q 007329 381 DKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMR-TGLISYIIIANTLIDMYSKCKCIDKALEVFHQ 459 (608)
Q Consensus 381 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 459 (608)
++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++
T Consensus 408 ~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~ 487 (697)
T PLN03081 408 TKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRR 487 (697)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999986 69999999999999999999999999999999
Q ss_pred CC-CCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCC
Q 007329 460 IP-DKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKP-NSVTLVSILSACARIGALMCGKEIHAHALRIGVAFD 533 (608)
Q Consensus 460 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~ 533 (608)
|. .|+..+|++++.+|..+|+.+.|..+++++. +..| +..+|..++..|++.|++++|.+++++|.+.|+...
T Consensus 488 ~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~-~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~ 562 (697)
T PLN03081 488 APFKPTVNMWAALLTACRIHKNLELGRLAAEKLY-GMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMH 562 (697)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh-CCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccC
Confidence 97 6899999999999999999999999999987 5555 567999999999999999999999999999998643
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.7e-70 Score=578.13 Aligned_cols=507 Identities=17% Similarity=0.180 Sum_probs=432.6
Q ss_pred CCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcC-CcchhHHhHHHHHhhhcCChhhHHHHHcccCCCCcchHHHHHH
Q 007329 91 ICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMS-HLSVRLGNAFLSMFVKFGDLGHAWYVFGKMCDRDLFSWNVLIG 169 (608)
Q Consensus 91 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 169 (608)
..++...|..++..|.+.|++++|.++|++|.+.++ .++..+++.++..|.+.|.+++|..+|+.|..||..+|+.+|.
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 345667778888888888888888888888888775 4566777788888888888888888888888888888888888
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 007329 170 GYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLV 249 (608)
Q Consensus 170 ~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 249 (608)
+|++.|+++.|.++|++|.+.| +.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|+++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~G-l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAG-LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH
Confidence 8888888888888888888777 888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHccCCC----CCHhHHHHHHHHHHhcCChhHHHHHHHHHHH--CCCCCChhHHHHHHHHHhhcCChhhHHHHHHH
Q 007329 250 RARLVFDGMPK----RDRISWNAMISGYFENGEYMKGLMLFIMMRE--VLVDPDFMTLSSVISASELVGDEKLGREVHGY 323 (608)
Q Consensus 250 ~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 323 (608)
+|.++|++|.+ ||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.+|.+|++.|++++|.++|+.
T Consensus 525 eAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888888853 5888888888888888888888888888875 57888888888888888888888888888888
Q ss_pred HHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCC----CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCH
Q 007329 324 VIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMES----KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDE 399 (608)
Q Consensus 324 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 399 (608)
|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|.+++++|.+.|+.||.
T Consensus 605 M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~ 684 (1060)
T PLN03218 605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684 (1060)
T ss_pred HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 88888888888888888888888888888888888875 78888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCC----CCCcccHHHHHHHH
Q 007329 400 ITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIP----DKNVISWTSIILGL 475 (608)
Q Consensus 400 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~ 475 (608)
.+|+.+|.+|++.|++++|.++|++|.+.|+.|+..+|+.||.+|++.|++++|.++|++|. .||..+|++++.+|
T Consensus 685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~ 764 (1060)
T PLN03218 685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS 764 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888876 47888888888888
Q ss_pred HhCCCchHHHHHHHHhH-hCCCCCHHHHHHHHHHHhc-----------------------cCcHHHHHHHHHHHHHhCCC
Q 007329 476 RLNNRSFEALIFFRKMM-LNLKPNSVTLVSILSACAR-----------------------IGALMCGKEIHAHALRIGVA 531 (608)
Q Consensus 476 ~~~~~~~~A~~~~~~m~-~~~~p~~~~~~~ll~~~~~-----------------------~~~~~~a~~~~~~~~~~~~~ 531 (608)
++.|+.++|.+++.+|. .|+.||..+|+.++..|.+ .+..++|..+|++|++.|+.
T Consensus 765 ~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~ 844 (1060)
T PLN03218 765 ERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTL 844 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCC
Confidence 88888888888888888 7888888888888765432 12346799999999999999
Q ss_pred CCccHHHHHHHHhHhcCCHHHHHHHHHhc-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 532 FDGFLPNALLDMYVRCGRMKPAWNQFNSN-----ERDVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 532 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
||..+|+.++.++++.+..+.+..+++.+ .|+..+|++|+.++.+. .++|..++++|.+.|+.|+-.
T Consensus 845 Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 845 PTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred CCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 99999999999999999999999999988 56789999999998432 478999999999999999875
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7.3e-68 Score=560.65 Aligned_cols=493 Identities=17% Similarity=0.193 Sum_probs=452.7
Q ss_pred cchHHHHHHHHhCCChHHHHHHHHHHhhcCC-CCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHH
Q 007329 61 KNPNSRLNELCLNGSLEQALKYLDSMQELNI-CVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSM 139 (608)
Q Consensus 61 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~g~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (608)
..+..++..+++.|++++|+++|++|.+.|+ .++...++.++..|.+.|.+++|..++..|.. |+..+|+.++.+
T Consensus 371 ~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a 446 (1060)
T PLN03218 371 PEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSV 446 (1060)
T ss_pred hHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHH
Confidence 3388999999999999999999999999886 45777788889999999999999999888754 899999999999
Q ss_pred hhhcCChhhHHHHHcccC----CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhh
Q 007329 140 FVKFGDLGHAWYVFGKMC----DRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKR 215 (608)
Q Consensus 140 ~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 215 (608)
|++.|+++.|.++|++|. .||..+|+.||.+|++.|++++|.++|++|.+.| +.||..+|+.+|.+|++.|++++
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G-v~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG-VEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHCcCHHH
Confidence 999999999999999994 4899999999999999999999999999999887 99999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCC------CCCHhHHHHHHHHHHhcCChhHHHHHHHHH
Q 007329 216 GKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMP------KRDRISWNAMISGYFENGEYMKGLMLFIMM 289 (608)
Q Consensus 216 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 289 (608)
|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|. .+|..+|+.+|.+|++.|++++|.++|++|
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999985 368999999999999999999999999999
Q ss_pred HHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCC----CChh
Q 007329 290 REVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMES----KDVV 365 (608)
Q Consensus 290 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~ 365 (608)
.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+ ||..
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ 685 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV 685 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999975 7899
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhH
Q 007329 366 SWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYS 445 (608)
Q Consensus 366 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 445 (608)
+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|+
T Consensus 686 tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~ 765 (1060)
T PLN03218 686 SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASE 765 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHccCC----CCCcccHHHHHHHHHh-----------------------CCCchHHHHHHHHhH-hCCCC
Q 007329 446 KCKCIDKALEVFHQIP----DKNVISWTSIILGLRL-----------------------NNRSFEALIFFRKMM-LNLKP 497 (608)
Q Consensus 446 ~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~-----------------------~~~~~~A~~~~~~m~-~~~~p 497 (608)
+.|++++|.++|++|. .||..+|++++..|.+ .+..++|+.+|++|. .|+.|
T Consensus 766 k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~P 845 (1060)
T PLN03218 766 RKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLP 845 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCC
Confidence 9999999999999987 4788999998865432 122467999999999 89999
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 498 NSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 498 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
|..||+.++.++...+..+.+..+++.+...+..|+..+|++||+++++. .++|..++++|
T Consensus 846 d~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em 906 (1060)
T PLN03218 846 TMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEA 906 (1060)
T ss_pred CHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHH
Confidence 99999999988888899999999999998888899999999999998432 46899999999
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=7e-67 Score=552.00 Aligned_cols=441 Identities=28% Similarity=0.419 Sum_probs=427.9
Q ss_pred CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHH
Q 007329 158 DRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNA 237 (608)
Q Consensus 158 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 237 (608)
..+..+|+.+|.++.+.|++++|+++|+.|...+++.||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 35677899999999999999999999999998766889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhH
Q 007329 238 LITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLG 317 (608)
Q Consensus 238 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 317 (608)
++++|++.|++++|.++|++|.++|..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCC
Q 007329 318 REVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMP 397 (608)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 397 (608)
.+++..+.+.|+.+|..+|+.|+++|+++|++++|.++|++|.++|+++||.+|.+|++.|++++|+++|++|.+.|+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHh
Q 007329 398 DEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRL 477 (608)
Q Consensus 398 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 477 (608)
|..||+.++.+|++.|+++.|.++++.|.+.|+.|+..+|++|+++|+++|++++|.++|++|.++|+.+||+||.+|++
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN 403 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHhH-hCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH-hCCCCCccHHHHHHHHhHhcCCHHHHHH
Q 007329 478 NNRSFEALIFFRKMM-LNLKPNSVTLVSILSACARIGALMCGKEIHAHALR-IGVAFDGFLPNALLDMYVRCGRMKPAWN 555 (608)
Q Consensus 478 ~~~~~~A~~~~~~m~-~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 555 (608)
+|+.++|+++|++|. .|+.||..||+.++.+|.+.|.+++|.++|+.|.+ .|+.|+..+|++++++|++.|++++|.+
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence 999999999999999 89999999999999999999999999999999985 6999999999999999999999999999
Q ss_pred HHHhc--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 556 QFNSN--ERDVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 556 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
+++++ .|+..+|++|+.+|..+|+++.|..+++++.+ +.|+.+
T Consensus 484 ~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~ 528 (697)
T PLN03081 484 MIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKL 528 (697)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCC
Confidence 99999 89999999999999999999999988888864 466644
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=5.4e-33 Score=308.89 Aligned_cols=518 Identities=13% Similarity=0.058 Sum_probs=245.4
Q ss_pred hHHHHHHHHhCCChHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhh
Q 007329 63 PNSRLNELCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVK 142 (608)
Q Consensus 63 ~~~ll~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (608)
+..+...+.+.|++++|+..++.+..... .+...+..+...+...|++++|.++++.+.+..+. +...+..+...+..
T Consensus 332 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 409 (899)
T TIGR02917 332 RRLLASIQLRLGRVDEAIATLSPALGLDP-DDPAALSLLGEAYLALGDFEKAAEYLAKATELDPE-NAAARTQLGISKLS 409 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHh
Confidence 44444555555555555555555544321 23444444555555555555555555555444322 23344444444555
Q ss_pred cCChhhHHHHHcccCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHH
Q 007329 143 FGDLGHAWYVFGKMCD---RDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEV 219 (608)
Q Consensus 143 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 219 (608)
.|++++|.+.|+.+.+ .+...+..++..+.+.|++++|+++++.+.... +.+..++..+...+...|++++|.+.
T Consensus 410 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~ 487 (899)
T TIGR02917 410 QGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ--PDNASLHNLLGAIYLGKGDLAKAREA 487 (899)
T ss_pred CCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHHhCCCHHHHHHH
Confidence 5555555555554422 112233334444444555555555555444322 33344444444444444555555555
Q ss_pred HHHHHHhCC---------------------------------CCchhHHHHHHHHHHhcCCHHHHHHHHccCCC---CCH
Q 007329 220 HVHVIRFGY---------------------------------EADVDVVNALITMYVKCGDLVRARLVFDGMPK---RDR 263 (608)
Q Consensus 220 ~~~~~~~g~---------------------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~ 263 (608)
|+++.+... +.+..++..+...+.+.|+.++|...++++.. .+.
T Consensus 488 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 567 (899)
T TIGR02917 488 FEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEI 567 (899)
T ss_pred HHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence 544444321 22344444444444444455554444444322 133
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHH
Q 007329 264 ISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMY 343 (608)
Q Consensus 264 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 343 (608)
..+..++..+.+.|++++|..+++++.+.. +.+...|..+...+...|++++|...++.+.+.. +.+...+..+...+
T Consensus 568 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 645 (899)
T TIGR02917 568 EPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAY 645 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 344444445555555555555555444321 2233444444455555555555555555544432 22333444445555
Q ss_pred HhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHH
Q 007329 344 LSFGNREEGEKVFSRMES---KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIK 420 (608)
Q Consensus 344 ~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 420 (608)
.+.|++++|..+|+++.+ .+...+..+...+...|++++|..+++.+.+.+ ..+...+..+...+...|++++|.+
T Consensus 646 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~ 724 (899)
T TIGR02917 646 AVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQ 724 (899)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHH
Confidence 555555555555544433 233444445555555555555555555554443 2233444444445555555555555
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCC
Q 007329 421 LHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPD---KNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKP 497 (608)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p 497 (608)
.++.+...+ |+..++..+..++.+.|++++|.+.++++.+ .++..++.+...|...|++++|.+.|+++....++
T Consensus 725 ~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 802 (899)
T TIGR02917 725 AYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD 802 (899)
T ss_pred HHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC
Confidence 555544433 2223344444555555555555555544431 23344444455555555555555555555533344
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHH
Q 007329 498 NSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTG 573 (608)
Q Consensus 498 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~ 573 (608)
+..++..+...+...|+ .+|+..++++.+..+. ++..+..++.+|...|++++|.+.++++ +.+..++..++.+
T Consensus 803 ~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 880 (899)
T TIGR02917 803 NAVVLNNLAWLYLELKD-PRALEYAEKALKLAPN-IPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALA 880 (899)
T ss_pred CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Confidence 44455555555555555 4455555555444332 3344444555555555555555555555 2244555555555
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 007329 574 YAERGQGALAEEFFRKMI 591 (608)
Q Consensus 574 ~~~~g~~~~A~~~~~~m~ 591 (608)
+.+.|++++|.+++++|+
T Consensus 881 ~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 881 LLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHcCCHHHHHHHHHHHh
Confidence 555555555555555543
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.5e-32 Score=303.60 Aligned_cols=522 Identities=12% Similarity=0.056 Sum_probs=357.2
Q ss_pred hHHHHHHHHhCCChHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhh
Q 007329 63 PNSRLNELCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVK 142 (608)
Q Consensus 63 ~~~ll~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (608)
+..+...+...|++++|...|+.+.+... .+...+..+...+...|++++|...++.+.+..+. +...+..+...+.+
T Consensus 298 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 375 (899)
T TIGR02917 298 LLLAGASEYQLGNLEQAYQYLNQILKYAP-NSHQARRLLASIQLRLGRVDEAIATLSPALGLDPD-DPAALSLLGEAYLA 375 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHH
Confidence 44555678889999999999999987542 35566777778899999999999999999877643 56778889999999
Q ss_pred cCChhhHHHHHcccCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHH
Q 007329 143 FGDLGHAWYVFGKMCD---RDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEV 219 (608)
Q Consensus 143 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 219 (608)
.|++++|.+.|+++.+ .+...|..+...+...|++++|++.++.+.+.. +.+......++..+.+.|++++|.++
T Consensus 376 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~ 453 (899)
T TIGR02917 376 LGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLD--PELGRADLLLILSYLRSGQFDKALAA 453 (899)
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC--CcchhhHHHHHHHHHhcCCHHHHHHH
Confidence 9999999999998844 355678888889999999999999999998754 33445566778889999999999999
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCC---CCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 007329 220 HVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPK---RDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDP 296 (608)
Q Consensus 220 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 296 (608)
++.+.+.. +.+..++..+...|...|++++|.+.|+++.+ .+...+..+...+...|++++|.+.++++.+.+ +.
T Consensus 454 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~ 531 (899)
T TIGR02917 454 AKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PK 531 (899)
T ss_pred HHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cC
Confidence 99998764 56778899999999999999999999987653 355667777777778888888888888776643 22
Q ss_pred ChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHH
Q 007329 297 DFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMES---KDVVSWTTMISC 373 (608)
Q Consensus 297 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~ 373 (608)
+..++..+...+...|+.++|..+++.+.+.+ +.+...+..++..|...|++++|..+++.+.+ .+...|..+..+
T Consensus 532 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 610 (899)
T TIGR02917 532 NLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRA 610 (899)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 45556666666666666666666666665543 33444455555555566666666655555543 234455555555
Q ss_pred HHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCC-----------------------
Q 007329 374 YEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGL----------------------- 430 (608)
Q Consensus 374 ~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------------------- 430 (608)
|...|++++|...|+++.+.. +.+...+..+...+...|++++|..+++.+.+...
T Consensus 611 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 689 (899)
T TIGR02917 611 QLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAK 689 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 555555555555555555432 12333444444555555555555555554443320
Q ss_pred ----------CCchhHHHHHHHHhHhcCCHHHHHHHHccCC--CCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCC
Q 007329 431 ----------ISYIIIANTLIDMYSKCKCIDKALEVFHQIP--DKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPN 498 (608)
Q Consensus 431 ----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~ 498 (608)
+.+...+..+...+.+.|++++|.+.|+.+. .|+..++..++.++.+.|++++|.+.++++....+.+
T Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 769 (899)
T TIGR02917 690 KIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPND 769 (899)
T ss_pred HHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 2334444455555555555555555555543 2333445555566666666666666666666445555
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHH
Q 007329 499 SVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGY 574 (608)
Q Consensus 499 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~ 574 (608)
...+..+...|...|++++|.+.++++.+..+. ++.++..++..+...|+ ++|.+.++++ +.++..+..+...+
T Consensus 770 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 847 (899)
T TIGR02917 770 AVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD-NAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLL 847 (899)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 666666666666677777777777776665543 55666666777777777 6677777666 33556666777777
Q ss_pred HhcCCHHHHHHHHHHHHHcC
Q 007329 575 AERGQGALAEEFFRKMIDSK 594 (608)
Q Consensus 575 ~~~g~~~~A~~~~~~m~~~g 594 (608)
...|++++|.++++++++.+
T Consensus 848 ~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 848 VEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHcCCHHHHHHHHHHHHhhC
Confidence 77888888888888887753
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=1.3e-24 Score=241.67 Aligned_cols=529 Identities=12% Similarity=0.024 Sum_probs=351.4
Q ss_pred hcCCCCCcchHHHHHHHHhCCChHHHHHHHHHHhhcCCCCChhhH-----------------HHHHHHhhccCCchhhhH
Q 007329 54 NTSSIATKNPNSRLNELCLNGSLEQALKYLDSMQELNICVDEDAL-----------------VNLVRLCEWKRGYDEGLY 116 (608)
Q Consensus 54 ~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~-----------------~~ll~~~~~~~~~~~a~~ 116 (608)
...|..+..+..+...+.+.|+.++|...++++.+.. |+...+ ..+.+.+...|++++|.+
T Consensus 56 ~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~ 133 (1157)
T PRK11447 56 LIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALA 133 (1157)
T ss_pred ccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHH
Confidence 3345555557778888899999999999999998855 433222 233446788899999999
Q ss_pred HHHHHHHhcCCcchhHHhHHHHHhhhcCChhhHHHHHcccCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCC-
Q 007329 117 LHSVVSKTMSHLSVRLGNAFLSMFVKFGDLGHAWYVFGKMCD--R-DLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGG- 192 (608)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~- 192 (608)
.++.+.+..+.........+.......|+.++|++.|+++.+ | +...+..+...+...|++++|++.++++.+...
T Consensus 134 ~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~ 213 (1157)
T PRK11447 134 SYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAG 213 (1157)
T ss_pred HHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCc
Confidence 999988776543221111111222345899999999999854 3 455777888889999999999999998754320
Q ss_pred --------------C--C--------------CCcchH---------------------HHHHHHhcCCCChhhHHHHHH
Q 007329 193 --------------V--K--------------PDVYTF---------------------PCVLRTCGGVPDLKRGKEVHV 221 (608)
Q Consensus 193 --------------~--~--------------p~~~~~---------------------~~ll~~~~~~~~~~~a~~~~~ 221 (608)
. . |+...+ ......+...|++++|...|+
T Consensus 214 ~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~ 293 (1157)
T PRK11447 214 RDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQ 293 (1157)
T ss_pred hHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHH
Confidence 0 0 110000 011233556788888888888
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCC-----HhHHH------------HHHHHHHhcCChhHHHH
Q 007329 222 HVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKRD-----RISWN------------AMISGYFENGEYMKGLM 284 (608)
Q Consensus 222 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~------------~li~~~~~~~~~~~a~~ 284 (608)
+.++.. +.+..++..+..+|.+.|++++|+..|++..+.+ ...|. .....+.+.|++++|+.
T Consensus 294 ~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~ 372 (1157)
T PRK11447 294 QAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAER 372 (1157)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 887764 3466777788888888888888888887765421 11121 12345667888888888
Q ss_pred HHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCCCC-
Q 007329 285 LFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKD- 363 (608)
Q Consensus 285 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 363 (608)
.|++..+.. +.+...+..+...+...|++++|++.|+++.+.. +.+...+..+...|. .++.++|..+++.+....
T Consensus 373 ~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~ 449 (1157)
T PRK11447 373 LYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQR 449 (1157)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHH
Confidence 888887753 2244556667777888888888888888887663 333444445555543 345566666665544311
Q ss_pred -----------hhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCC
Q 007329 364 -----------VVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLIS 432 (608)
Q Consensus 364 -----------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 432 (608)
...+..+...+...|++++|++.|++..+.... +...+..+...+.+.|++++|...++.+.+.. +.
T Consensus 450 ~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~ 527 (1157)
T PRK11447 450 RSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PN 527 (1157)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CC
Confidence 112333445566677777777777777765311 34455666667777777777777777766543 22
Q ss_pred chhHHHH--------------------------------------------HHHHhHhcCCHHHHHHHHccCCCCCcccH
Q 007329 433 YIIIANT--------------------------------------------LIDMYSKCKCIDKALEVFHQIPDKNVISW 468 (608)
Q Consensus 433 ~~~~~~~--------------------------------------------li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 468 (608)
+...+.. +...+...|+.++|.++++. ...+...+
T Consensus 528 ~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-~p~~~~~~ 606 (1157)
T PRK11447 528 DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-QPPSTRID 606 (1157)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-CCCCchHH
Confidence 2222222 23334455566666666552 12344456
Q ss_pred HHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcC
Q 007329 469 TSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCG 548 (608)
Q Consensus 469 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 548 (608)
..+...+.+.|++++|++.|++.....+.+...+..++..+...|++++|++.++.+.+..+. +...+..+..++...|
T Consensus 607 ~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~-~~~~~~~la~~~~~~g 685 (1157)
T PRK11447 607 LTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATAND-SLNTQRRVALAWAALG 685 (1157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-ChHHHHHHHHHHHhCC
Confidence 677788888899999999999888555567788888888898999999999999887765433 4556667788888899
Q ss_pred CHHHHHHHHHhc---CC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007329 549 RMKPAWNQFNSN---ER-------DVSAWNILLTGYAERGQGALAEEFFRKMID 592 (608)
Q Consensus 549 ~~~~A~~~~~~~---~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 592 (608)
++++|.++++++ .| +...+..+...+...|++++|++.|++.+.
T Consensus 686 ~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 686 DTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred CHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999887 11 124666777888889999999999888864
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=5e-23 Score=229.10 Aligned_cols=524 Identities=12% Similarity=0.042 Sum_probs=377.0
Q ss_pred hHHHHHHHHhCCChHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchh-----------
Q 007329 63 PNSRLNELCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVR----------- 131 (608)
Q Consensus 63 ~~~ll~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------- 131 (608)
+....+.....++.+.|.+.++++..... .+...+..++..+.+.|+.++|.+.++.+.+..+.....
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p-~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~ 109 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDP-NNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLST 109 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcC
Confidence 34455667789999999999999987432 267778888889999999999999999999988643221
Q ss_pred ----HHhHHHHHhhhcCChhhHHHHHcccCCCCcchHH----HHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHH
Q 007329 132 ----LGNAFLSMFVKFGDLGHAWYVFGKMCDRDLFSWN----VLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCV 203 (608)
Q Consensus 132 ----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 203 (608)
....+...+.+.|++++|...|++..+.+..... .+.......|+.++|++.++++.+.. +-+...+..+
T Consensus 110 ~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~--P~~~~~~~~L 187 (1157)
T PRK11447 110 PEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY--PGNTGLRNTL 187 (1157)
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 1133345678899999999999998553222211 11122234699999999999999764 4456667788
Q ss_pred HHHhcCCCChhhHHHHHHHHHHhCC------------------C--------------CchhHH----------------
Q 007329 204 LRTCGGVPDLKRGKEVHVHVIRFGY------------------E--------------ADVDVV---------------- 235 (608)
Q Consensus 204 l~~~~~~~~~~~a~~~~~~~~~~g~------------------~--------------~~~~~~---------------- 235 (608)
...+...|+.++|.+.++++.+... . |+....
T Consensus 188 A~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~d 267 (1157)
T PRK11447 188 ALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLAD 267 (1157)
T ss_pred HHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccC
Confidence 8889999999999999998764321 0 110000
Q ss_pred -----HHHHHHHHhcCCHHHHHHHHccCCC---CCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-ChhHHH----
Q 007329 236 -----NALITMYVKCGDLVRARLVFDGMPK---RDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDP-DFMTLS---- 302 (608)
Q Consensus 236 -----~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~---- 302 (608)
......+...|++++|+..|++..+ .+...+..+...+.+.|++++|+..|++..+..... +...+.
T Consensus 268 p~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~ 347 (1157)
T PRK11447 268 PAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLK 347 (1157)
T ss_pred cchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHH
Confidence 0113445667888999988887754 267788888889999999999999998887653221 111111
Q ss_pred --------HHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCC--C-ChhhHHHHH
Q 007329 303 --------SVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMES--K-DVVSWTTMI 371 (608)
Q Consensus 303 --------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li 371 (608)
.....+.+.|++++|...++++++.. +.+...+..+...+...|++++|++.|++..+ | +...+..+.
T Consensus 348 ~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~ 426 (1157)
T PRK11447 348 VNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLA 426 (1157)
T ss_pred hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 12335667889999999999888774 44566677788889999999999999988775 3 344566666
Q ss_pred HHHHcCCCchHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 007329 372 SCYEGSVLPDKAVETYQMMEAEGSM--------PDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDM 443 (608)
Q Consensus 372 ~~~~~~~~~~~a~~~~~~m~~~g~~--------p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 443 (608)
..|. .++.++|+..++.+...... .....+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 427 ~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~ 504 (1157)
T PRK11447 427 NLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQD 504 (1157)
T ss_pred HHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 6664 45678888887765432100 011234456677888999999999999998876 4466777889999
Q ss_pred hHhcCCHHHHHHHHccCCC--C-CcccHHHHHHHHHhCCCchHHHHHHHHhH----------------------------
Q 007329 444 YSKCKCIDKALEVFHQIPD--K-NVISWTSIILGLRLNNRSFEALIFFRKMM---------------------------- 492 (608)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~---------------------------- 492 (608)
|.+.|++++|...++++.+ | +...+..+...+.+.++.++|+..++.+.
T Consensus 505 ~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~ 584 (1157)
T PRK11447 505 LRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLR 584 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHH
Confidence 9999999999999998753 3 33333333333444555555555444321
Q ss_pred ------------hCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 493 ------------LNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 493 ------------~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
+..+.+...+..+...+.+.|++++|+..++++.+..+. +...+..++.+|...|++++|.+.++.+
T Consensus 585 ~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 585 DSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred HCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 123445566777888889999999999999999987655 6778888999999999999999999987
Q ss_pred ---C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 561 ---E-RDVSAWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 561 ---~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
. .+...+..+..++...|++++|.++++++++.
T Consensus 664 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 664 PATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred hccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 3 45677788888899999999999999999875
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=1.7e-21 Score=206.90 Aligned_cols=229 Identities=13% Similarity=0.056 Sum_probs=180.7
Q ss_pred ChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 007329 363 DVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLID 442 (608)
Q Consensus 363 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 442 (608)
+...|..+..++.. ++.++|+..+.+.... .|+......+...+...|++++|...++.+... +|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 44556666666665 7888899988777765 466655445555567899999999999987544 344445566777
Q ss_pred HhHhcCCHHHHHHHHccCCCCCcccHHHH---HHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHH
Q 007329 443 MYSKCKCIDKALEVFHQIPDKNVISWTSI---ILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGK 519 (608)
Q Consensus 443 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 519 (608)
++.+.|++++|...+++..+.++..++.. ...+...|++++|+..+++.. ...|+...+..+..++.+.|++++|.
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL-~l~P~~~a~~~LA~~l~~lG~~deA~ 629 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSL-NIAPSANAYVARATIYRQRHNVPAAV 629 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 88899999999999988775444333333 333445599999999999998 55567888999999999999999999
Q ss_pred HHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 007329 520 EIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKMIDSKG 595 (608)
Q Consensus 520 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 595 (608)
..++++.+..+. +...+..+..++...|++++|++.++++ +.+...+..+..++...|++++|...+++..+.
T Consensus 630 ~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l-- 706 (987)
T PRK09782 630 SDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD-- 706 (987)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--
Confidence 999999988766 6778888999999999999999999988 446788999999999999999999999999885
Q ss_pred CCCch
Q 007329 596 NWRKL 600 (608)
Q Consensus 596 ~p~~~ 600 (608)
.|+..
T Consensus 707 ~P~~a 711 (987)
T PRK09782 707 IDNQA 711 (987)
T ss_pred CCCCc
Confidence 67654
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.92 E-value=4.2e-20 Score=196.41 Aligned_cols=525 Identities=11% Similarity=-0.064 Sum_probs=362.9
Q ss_pred hcCCCCCcchHHHHHHHHhCCChHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHH
Q 007329 54 NTSSIATKNPNSRLNELCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLG 133 (608)
Q Consensus 54 ~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 133 (608)
...|.....+..+...|.+.|+.++|+..+++..+.. |+...|..++..+ +++++|..+++++.+..+.. ..++
T Consensus 72 ~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i---~~~~kA~~~ye~l~~~~P~n-~~~~ 145 (987)
T PRK09782 72 QQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI---PVEVKSVTTVEELLAQQKAC-DAVP 145 (987)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh---ccChhHHHHHHHHHHhCCCC-hhHH
Confidence 3445555557888888999999999999999888743 4444444444333 88889999999998887653 3333
Q ss_pred hHHHHH--------hhhcCChhhHHHHHcccCCC--CcchHHHH-HHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHH
Q 007329 134 NAFLSM--------FVKFGDLGHAWYVFGKMCDR--DLFSWNVL-IGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPC 202 (608)
Q Consensus 134 ~~l~~~--------~~~~g~~~~A~~~~~~~~~~--~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 202 (608)
..+... |.+.+...++++ .+...+ +..+.... ...|.+.|++++|++++.++.+.+ +.+..-...
T Consensus 146 ~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~--pl~~~~~~~ 221 (987)
T PRK09782 146 TLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN--TLSAAERRQ 221 (987)
T ss_pred HHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC--CCCHHHHHH
Confidence 334443 666666666666 333333 34444444 888999999999999999999875 334444555
Q ss_pred HHHHhcC-CCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCC-----CHhH-----------
Q 007329 203 VLRTCGG-VPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKR-----DRIS----------- 265 (608)
Q Consensus 203 ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~----------- 265 (608)
+..+|.. .++ +.+..+++. .+..+...+..+...|.+.|+.++|.++++++... +..+
T Consensus 222 L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~ 296 (987)
T PRK09782 222 WFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSAN 296 (987)
T ss_pred HHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCc
Confidence 6666666 355 666666442 33467888889999999999999999998887521 0000
Q ss_pred -------------------HHHHHHH------------------------------------------------------
Q 007329 266 -------------------WNAMISG------------------------------------------------------ 272 (608)
Q Consensus 266 -------------------~~~li~~------------------------------------------------------ 272 (608)
.-.++..
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~ 376 (987)
T PRK09782 297 PVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANL 376 (987)
T ss_pred hhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCH
Confidence 0001122
Q ss_pred ---------HHhcCChhHHHHHHHHHHHC--CCCCChhHHHHHHHHHhhcCC---hhhHHHH------------------
Q 007329 273 ---------YFENGEYMKGLMLFIMMREV--LVDPDFMTLSSVISASELVGD---EKLGREV------------------ 320 (608)
Q Consensus 273 ---------~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~---~~~a~~~------------------ 320 (608)
..+.|+.++|.++|+..... ...++......++..+.+.+. ...+..+
T Consensus 377 ~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 456 (987)
T PRK09782 377 TRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPG 456 (987)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhh
Confidence 22344555555555554431 112223333355555555544 2222111
Q ss_pred ----HHHHHHh-CC-CC--CcccchHHHHHHHhcCChHHHHHHHhhCCC--CChhhHHHHHHHHHcCCCchHHHHHHHHH
Q 007329 321 ----HGYVIKM-GF-SD--DVSVCNPLIKMYLSFGNREEGEKVFSRMES--KDVVSWTTMISCYEGSVLPDKAVETYQMM 390 (608)
Q Consensus 321 ----~~~~~~~-~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m 390 (608)
....... +. ++ +...+..+..++.. ++.++|...+.+... |+......+...+...|++++|...|+++
T Consensus 457 ~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka 535 (987)
T PRK09782 457 IADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKI 535 (987)
T ss_pred hhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 1111111 11 23 45566777777776 788889997777654 55433333344556899999999999998
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCC--CCCcccH
Q 007329 391 EAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIP--DKNVISW 468 (608)
Q Consensus 391 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~ 468 (608)
... .|+...+..+...+.+.|+.+.|...++...+.. +.....+..+.....+.|++++|...+++.. .|+...|
T Consensus 536 ~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~ 612 (987)
T PRK09782 536 SLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAY 612 (987)
T ss_pred hcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHH
Confidence 664 4555566677788899999999999999998765 3333344444444556699999999999887 4677788
Q ss_pred HHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcC
Q 007329 469 TSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCG 548 (608)
Q Consensus 469 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 548 (608)
..+...+.+.|++++|+..+++.....+.+...+..+..++...|++++|+..++++.+..+. ++..+..+..+|...|
T Consensus 613 ~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~-~~~a~~nLA~al~~lG 691 (987)
T PRK09782 613 VARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPD-DPALIRQLAYVNQRLD 691 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCC
Confidence 899999999999999999999999556667778888999999999999999999999998765 6788899999999999
Q ss_pred CHHHHHHHHHhc---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 549 RMKPAWNQFNSN---ERD-VSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 549 ~~~~A~~~~~~~---~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
++++|...++++ .|+ ..+.........+..+++.|.+-+++... +.|+.+
T Consensus 692 d~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~--~~~~~~ 745 (987)
T PRK09782 692 DMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWT--FSFDSS 745 (987)
T ss_pred CHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh--cCccch
Confidence 999999999998 554 35566677777788888888888887765 466655
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=1.9e-20 Score=176.77 Aligned_cols=450 Identities=14% Similarity=0.167 Sum_probs=253.3
Q ss_pred hhhhhhhcCCCCCcchHHHHHHHHhCCChHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCC
Q 007329 48 QVLNTQNTSSIATKNPNSRLNELCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSH 127 (608)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 127 (608)
.+...++..+..+.....+.+...+.|++.+|.+.-...-+... .+......+-..+.+..+.+....--...++..+.
T Consensus 36 ~v~qq~~~t~~~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~-t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q 114 (966)
T KOG4626|consen 36 SVLQQFNKTHEGSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDP-TNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQ 114 (966)
T ss_pred HHHHHhccCCccchhHHHHHHHHHhccCHHHHHHHHhHhhccCC-Ccccceeeehhhhhcccchhhhhhhhhhhhhccch
Confidence 33444555555555566777777788888888876665543221 12222222222333333444333322222222211
Q ss_pred cchhHHhHHHHHhhhcCChhhHHHHHcccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHh
Q 007329 128 LSVRLGNAFLSMFVKFGDLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTC 207 (608)
Q Consensus 128 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~ 207 (608)
-..+|..+.+.+-..|++++|+. +++.+.+.. +-....|..+..++
T Consensus 115 -~ae~ysn~aN~~kerg~~~~al~-------------------------------~y~~aiel~--p~fida~inla~al 160 (966)
T KOG4626|consen 115 -GAEAYSNLANILKERGQLQDALA-------------------------------LYRAAIELK--PKFIDAYINLAAAL 160 (966)
T ss_pred -HHHHHHHHHHHHHHhchHHHHHH-------------------------------HHHHHHhcC--chhhHHHhhHHHHH
Confidence 22334444444444444554444 444444422 22333444444444
Q ss_pred cCCCChhhHHHHHHHHHHhCCCCchhHH-HHHHHHHHhcCCHHHHHHHHccCCCC---CHhHHHHHHHHHHhcCChhHHH
Q 007329 208 GGVPDLKRGKEVHVHVIRFGYEADVDVV-NALITMYVKCGDLVRARLVFDGMPKR---DRISWNAMISGYFENGEYMKGL 283 (608)
Q Consensus 208 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~ 283 (608)
...|+.+.|.+.|.+.++. .|+.... +.+...+-..|++++|...+.+..+- =.+.|+.|...+..+|+...|+
T Consensus 161 ~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~ai 238 (966)
T KOG4626|consen 161 VTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAI 238 (966)
T ss_pred HhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHH
Confidence 4444444444444444332 2222211 12222233345555555544443322 2335555666666666666666
Q ss_pred HHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCC--
Q 007329 284 MLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMES-- 361 (608)
Q Consensus 284 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-- 361 (608)
.-|++.... .|+- ...|-.|...|...+.+++|...|.+...
T Consensus 239 q~y~eAvkl--dP~f----------------------------------~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr 282 (966)
T KOG4626|consen 239 QHYEEAVKL--DPNF----------------------------------LDAYINLGNVYKEARIFDRAVSCYLRALNLR 282 (966)
T ss_pred HHHHHhhcC--CCcc----------------------------------hHHHhhHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 666655542 2321 12333344444444444444444444332
Q ss_pred C-ChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHH
Q 007329 362 K-DVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPD-EITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANT 439 (608)
Q Consensus 362 ~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 439 (608)
| ..+.+..+...|-.+|+.+-|+..+++..+. .|+ ...|+.|..++-..|++.+|.+.+....... +.-....+-
T Consensus 283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~N 359 (966)
T KOG4626|consen 283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNN 359 (966)
T ss_pred CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHH
Confidence 2 2334444555555666666666666666654 343 4566667777777777777777776666554 333445566
Q ss_pred HHHHhHhcCCHHHHHHHHccCCCCC---cccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCC-HHHHHHHHHHHhccCcH
Q 007329 440 LIDMYSKCKCIDKALEVFHQIPDKN---VISWTSIILGLRLNNRSFEALIFFRKMMLNLKPN-SVTLVSILSACARIGAL 515 (608)
Q Consensus 440 li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~-~~~~~~ll~~~~~~~~~ 515 (608)
|...|...|.+++|..+|....+-. ....+.|...|-++|+.++|+..|++.+ .+.|+ ...|+.+...|-..|+.
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal-rI~P~fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL-RIKPTFADALSNMGNTYKEMGDV 438 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH-hcCchHHHHHHhcchHHHHhhhH
Confidence 7777777777777777777665422 2457778888888888888888888887 66665 45788888888889999
Q ss_pred HHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc---CCC-HHHHHHHHHHHH
Q 007329 516 MCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN---ERD-VSAWNILLTGYA 575 (608)
Q Consensus 516 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~-~~~~~~l~~~~~ 575 (608)
+.|.+.+.+++..++. -...++.|...|-..|++.+|++-++.+ +|| +..|-.++.++.
T Consensus 439 ~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 439 SAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred HHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHH
Confidence 9999999888876554 3456778888999999999999999887 665 456666665543
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=6.2e-20 Score=173.34 Aligned_cols=425 Identities=13% Similarity=0.071 Sum_probs=339.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 007329 164 WNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYV 243 (608)
Q Consensus 164 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 243 (608)
...|..-..+.|++++|++.-...-+.+ +-+....-.+-..+.+..+.+...+--...++.. +.-..+|..+.+.+-
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILK 127 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHH
Confidence 3455566678899999988877665443 2333333333444555556665544443333332 445778999999999
Q ss_pred hcCCHHHHHHHHccCCCC---CHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHH-HHhhcCChhhHHH
Q 007329 244 KCGDLVRARLVFDGMPKR---DRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVIS-ASELVGDEKLGRE 319 (608)
Q Consensus 244 ~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~-~~~~~~~~~~a~~ 319 (608)
..|++++|+.+++.+.+. .+..|..+..++...|+.+.|.+.|.+..+ +.|+.....+-+. .+...|+.++|..
T Consensus 128 erg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred HhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHH
Confidence 999999999999988764 567899999999999999999999998887 4566655444333 3345789999999
Q ss_pred HHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCCCC---hhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCC
Q 007329 320 VHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKD---VVSWTTMISCYEGSVLPDKAVETYQMMEAEGSM 396 (608)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 396 (608)
.|.+.++.. +.-...|+.|...+-..|+...|+..|++..+-| ...|-.|...|...+.+++|+..+.+.... .
T Consensus 206 cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--r 282 (966)
T KOG4626|consen 206 CYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--R 282 (966)
T ss_pred HHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--C
Confidence 999888774 4456788999999999999999999999998733 346788888999999999999999988775 4
Q ss_pred CC-HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC---CCcccHHHHH
Q 007329 397 PD-EITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPD---KNVISWTSII 472 (608)
Q Consensus 397 p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~ 472 (608)
|+ ...+..+...|...|.+|.|+.-++..++.. +.=...|+-|..++...|++.+|.+.+.+... ....+.+.|.
T Consensus 283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLg 361 (966)
T KOG4626|consen 283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLG 361 (966)
T ss_pred CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHH
Confidence 55 5677888888999999999999999988754 33357899999999999999999999998774 3456889999
Q ss_pred HHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHH
Q 007329 473 LGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKP 552 (608)
Q Consensus 473 ~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 552 (608)
..+...|.+++|..+|....+-.+-=....+.|...|-++|++++|...++++++..+. -...|+.++..|-..|+.+.
T Consensus 362 ni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~-fAda~~NmGnt~ke~g~v~~ 440 (966)
T KOG4626|consen 362 NIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT-FADALSNMGNTYKEMGDVSA 440 (966)
T ss_pred HHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch-HHHHHHhcchHHHHhhhHHH
Confidence 99999999999999999998333334567899999999999999999999999874432 25678889999999999999
Q ss_pred HHHHHHhc---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 553 AWNQFNSN---ER-DVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 553 A~~~~~~~---~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
|.+.+.++ .| -....+.|...|...|+..+|++-+++.+. ++||..
T Consensus 441 A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfp 490 (966)
T KOG4626|consen 441 AIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFP 490 (966)
T ss_pred HHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCc
Confidence 99999988 44 356889999999999999999999999987 477765
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=1.6e-19 Score=179.60 Aligned_cols=296 Identities=14% Similarity=0.054 Sum_probs=196.5
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHH
Q 007329 272 GYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREE 351 (608)
Q Consensus 272 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 351 (608)
.+...|++++|+..|.++.+.+. .+..++..+...+...|++++|..+++.+.+.+..++.
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~------------------ 104 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTRE------------------ 104 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHH------------------
Confidence 34455666666666666665421 12334555555555555555555555555443211100
Q ss_pred HHHHHhhCCCCChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC
Q 007329 352 GEKVFSRMESKDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLI 431 (608)
Q Consensus 352 a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 431 (608)
.....+..+...|.+.|++++|..+|+++.+.. .++..++..++..+.+.|++++|.+.++.+.+.+..
T Consensus 105 ----------~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 173 (389)
T PRK11788 105 ----------QRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD 173 (389)
T ss_pred ----------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC
Confidence 001234455555666666666666666665532 234455666666666666666666666666554322
Q ss_pred Cc----hhHHHHHHHHhHhcCCHHHHHHHHccCCC--C-CcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCC--HHHH
Q 007329 432 SY----IIIANTLIDMYSKCKCIDKALEVFHQIPD--K-NVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPN--SVTL 502 (608)
Q Consensus 432 ~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~--~~~~ 502 (608)
+. ...+..+...+.+.|++++|...|+++.+ | +...+..+...+.+.|++++|.++|+++... .|+ ..++
T Consensus 174 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~ 252 (389)
T PRK11788 174 SLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVL 252 (389)
T ss_pred cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHH
Confidence 21 12334556666777777777777777653 2 2346667778888888999999999988832 333 4567
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc---CCCHHHHHHHHHHHHh---
Q 007329 503 VSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN---ERDVSAWNILLTGYAE--- 576 (608)
Q Consensus 503 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~l~~~~~~--- 576 (608)
..++.++...|++++|.+.++++.+.. |+...+..++..+.+.|++++|..+++++ .|+...+..++..+..
T Consensus 253 ~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~ 330 (389)
T PRK11788 253 PKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAE 330 (389)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccC
Confidence 888999999999999999999998875 45566788999999999999999999987 7899999988887765
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCch
Q 007329 577 RGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 577 ~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
.|+.+++..++++|.+.++.|+..
T Consensus 331 ~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 331 EGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CccchhHHHHHHHHHHHHHhCCCC
Confidence 568999999999999887766554
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.87 E-value=1.9e-17 Score=164.98 Aligned_cols=527 Identities=15% Similarity=0.055 Sum_probs=371.7
Q ss_pred hHHHHHHH--HhCCChHHHHHHHHHHhhcC--CCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHH
Q 007329 63 PNSRLNEL--CLNGSLEQALKYLDSMQELN--ICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLS 138 (608)
Q Consensus 63 ~~~ll~~~--~~~~~~~~A~~~~~~~~~~g--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (608)
+..+..+. ...|++..|+.+|..+.... ..||... .+-.++.+.++.+.|+..|...++.++ .++.++..|.-
T Consensus 165 l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~ 241 (1018)
T KOG2002|consen 165 LALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGE 241 (1018)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHH
Confidence 34444443 45789999999999976543 3334322 223466788999999999999888876 34444443332
Q ss_pred Hhhhc---CChhhHHHHHccc---CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-CCcchHHHHHHHhcCCC
Q 007329 139 MFVKF---GDLGHAWYVFGKM---CDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVK-PDVYTFPCVLRTCGGVP 211 (608)
Q Consensus 139 ~~~~~---g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-p~~~~~~~ll~~~~~~~ 211 (608)
.-... ..+..+..++... ...|++..+.|.+.|.-.|++..++.+...+....-.. .-...|-.+.+++-..|
T Consensus 242 ~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~G 321 (1018)
T KOG2002|consen 242 VDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQG 321 (1018)
T ss_pred HHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhc
Confidence 22222 3455666666655 33678889999999999999999999999887643011 12345778889999999
Q ss_pred ChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCC---CHhHHHHHHHHHHhcC----ChhHHHH
Q 007329 212 DLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKR---DRISWNAMISGYFENG----EYMKGLM 284 (608)
Q Consensus 212 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~----~~~~a~~ 284 (608)
++++|.+.|.+..+......+..+-.+...|.+.|+++.+...|+.+.+. +..+...|...|...+ ..++|..
T Consensus 322 d~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~ 401 (1018)
T KOG2002|consen 322 DFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASN 401 (1018)
T ss_pred cHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHH
Confidence 99999999988877643333455667888999999999999999988653 5556666666676664 4566666
Q ss_pred HHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHH----HHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCC
Q 007329 285 LFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGY----VIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRME 360 (608)
Q Consensus 285 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 360 (608)
++.+..+.- ..|...|..+...+....- ......|.. +...+-.+.+...|.+...+...|++++|...|+...
T Consensus 402 ~l~K~~~~~-~~d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~ 479 (1018)
T KOG2002|consen 402 VLGKVLEQT-PVDSEAWLELAQLLEQTDP-WASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSAL 479 (1018)
T ss_pred HHHHHHhcc-cccHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHh
Confidence 666665542 3355566666555554433 333555544 3455656778889999999999999999999888765
Q ss_pred C-------CCh------hhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHH
Q 007329 361 S-------KDV------VSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEI-TIASVLSACACLGNLDLGIKLHQLAM 426 (608)
Q Consensus 361 ~-------~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~ 426 (608)
. +|. .+--.+...+-..++.+.|.+.|..+... -|.-. .|..++...-..++..+|...+....
T Consensus 480 ~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l 557 (1018)
T KOG2002|consen 480 GKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDAL 557 (1018)
T ss_pred hhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHH
Confidence 4 222 12223455666778899999999999886 34433 34444433344577888888888877
Q ss_pred HhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCC-----CCCcccHHHHHHHHH------------hCCCchHHHHHHH
Q 007329 427 RTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIP-----DKNVISWTSIILGLR------------LNNRSFEALIFFR 489 (608)
Q Consensus 427 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~------------~~~~~~~A~~~~~ 489 (608)
..+ ..++..+..+...+.+...+.-|.+-|..+. .+|..+.-+|.+.|. ..+..++|+++|.
T Consensus 558 ~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~ 636 (1018)
T KOG2002|consen 558 NID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYG 636 (1018)
T ss_pred hcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHH
Confidence 654 5566666777778888888877777555443 234444444444443 2345678999999
Q ss_pred HhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc------CCC
Q 007329 490 KMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN------ERD 563 (608)
Q Consensus 490 ~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~------~~~ 563 (608)
+.+...+-|...-+.+.-.++..|++.+|..+|.++++...+ +..+|-.+..+|..+|+|..|+++|+.+ ..+
T Consensus 637 kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~ 715 (1018)
T KOG2002|consen 637 KVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNR 715 (1018)
T ss_pred HHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 988666778888888888999999999999999999987653 5566778999999999999999999887 447
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 564 VSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 564 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
......|..++...|++.+|.+.+...... .|.+.
T Consensus 716 ~~vl~~Lara~y~~~~~~eak~~ll~a~~~--~p~~~ 750 (1018)
T KOG2002|consen 716 SEVLHYLARAWYEAGKLQEAKEALLKARHL--APSNT 750 (1018)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CCccc
Confidence 788899999999999999999998888774 66654
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=9.5e-20 Score=181.25 Aligned_cols=230 Identities=13% Similarity=0.101 Sum_probs=108.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCc----hhHHHHHH
Q 007329 164 WNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEAD----VDVVNALI 239 (608)
Q Consensus 164 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li 239 (608)
+..+...|.+.|++++|..+|+++.+.. +.+..++..++..+...|++++|.+.++.+.+.+..+. ...+..+.
T Consensus 110 ~~~La~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la 187 (389)
T PRK11788 110 LQELGQDYLKAGLLDRAEELFLQLVDEG--DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELA 187 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCC--cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 4444445555555555555555554322 23344444555555555555555555555544432211 11233444
Q ss_pred HHHHhcCCHHHHHHHHccCCCC---CHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhh
Q 007329 240 TMYVKCGDLVRARLVFDGMPKR---DRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKL 316 (608)
Q Consensus 240 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 316 (608)
..+.+.|++++|.+.|+++.+. +...+..+...+.+.|++++|.++++++.+.+......++..+..++...|+.++
T Consensus 188 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~ 267 (389)
T PRK11788 188 QQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAE 267 (389)
T ss_pred HHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHH
Confidence 4555555555555555554321 3344555556666666666666666666543222122344555555555555555
Q ss_pred HHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCC--CChhhHHHHHHHHHc---CCCchHHHHHHHHHH
Q 007329 317 GREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMES--KDVVSWTTMISCYEG---SVLPDKAVETYQMME 391 (608)
Q Consensus 317 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~ 391 (608)
|...++.+.+. .|+...+..++..+.+.|++++|.++++++.+ |+...++.++..+.. .|+.++++.++++|.
T Consensus 268 A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~ 345 (389)
T PRK11788 268 GLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLV 345 (389)
T ss_pred HHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHH
Confidence 55555555444 23333334444444444555444444444332 344444444433332 224444444444444
Q ss_pred HCCCCC
Q 007329 392 AEGSMP 397 (608)
Q Consensus 392 ~~g~~p 397 (608)
+.++.|
T Consensus 346 ~~~~~~ 351 (389)
T PRK11788 346 GEQLKR 351 (389)
T ss_pred HHHHhC
Confidence 444333
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=2.9e-18 Score=179.49 Aligned_cols=413 Identities=11% Similarity=-0.025 Sum_probs=218.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 007329 164 WNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYV 243 (608)
Q Consensus 164 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 243 (608)
+......+.+.|++++|++.|++..+ +.|+...|..+..++...|++++|.+.++..++.. +.+...+..+..+|.
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~---~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE---CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 33445555666666666666666554 34555556666666666666666666666666543 234455666666666
Q ss_pred hcCCHHHHHHHHccCCCC---CHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHH
Q 007329 244 KCGDLVRARLVFDGMPKR---DRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREV 320 (608)
Q Consensus 244 ~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 320 (608)
..|++++|...|...... +......++..+.. ..+........+.. .++...+..+. .+...........-
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~ 279 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVG-NYLQSFRPKPRPAG 279 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHH-HHHHHccCCcchhh
Confidence 666666666555433211 11111111111111 11111111111110 11111111111 11111111111111
Q ss_pred HHHHHHhCCCCCcccchHHHHHH------HhcCChHHHHHHHhhCCC-----C-ChhhHHHHHHHHHcCCCchHHHHHHH
Q 007329 321 HGYVIKMGFSDDVSVCNPLIKMY------LSFGNREEGEKVFSRMES-----K-DVVSWTTMISCYEGSVLPDKAVETYQ 388 (608)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~~a~~~~~~~~~-----~-~~~~~~~li~~~~~~~~~~~a~~~~~ 388 (608)
+.... ..+...-..++... ...+++++|.+.|+...+ | ....|+.+...+...|++++|+..++
T Consensus 280 ~~~~~----~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ 355 (615)
T TIGR00990 280 LEDSN----ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLS 355 (615)
T ss_pred hhccc----ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 11000 00111111111111 123556667766666543 1 23445666666667777777777777
Q ss_pred HHHHCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC--C-C
Q 007329 389 MMEAEGSMPD-EITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPD--K-N 464 (608)
Q Consensus 389 ~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~ 464 (608)
+..+. .|+ ...|..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...|++..+ | +
T Consensus 356 kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~ 432 (615)
T TIGR00990 356 KSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF 432 (615)
T ss_pred HHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC
Confidence 76664 233 4456666666677777777777777766654 34456666677777777777777777776653 2 3
Q ss_pred cccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHH------H
Q 007329 465 VISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLP------N 538 (608)
Q Consensus 465 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~------~ 538 (608)
...|..+...+.+.|++++|+..|++.+...+.+...++.+...+...|++++|.+.++++.+..+..+.... +
T Consensus 433 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~ 512 (615)
T TIGR00990 433 IFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLIN 512 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHH
Confidence 3455566667777777777777777776444445666777777777777777777777777765443222111 1
Q ss_pred HHHHHhHhcCCHHHHHHHHHhc---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 539 ALLDMYVRCGRMKPAWNQFNSN---ER-DVSAWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 539 ~l~~~~~~~g~~~~A~~~~~~~---~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
.....|...|++++|.++++++ .| +...+..+...+...|++++|.++|++..+.
T Consensus 513 ~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 513 KALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 1122233457777777777765 33 4456777777777777777777777777654
No 19
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.87 E-value=6.6e-18 Score=168.19 Aligned_cols=512 Identities=14% Similarity=0.082 Sum_probs=376.9
Q ss_pred hHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcC--CcchhHHhHHHHHhhhcCChhhHHHHH
Q 007329 76 LEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMS--HLSVRLGNAFLSMFVKFGDLGHAWYVF 153 (608)
Q Consensus 76 ~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~ 153 (608)
.+.|...|....+..+ ++.-.+.--.......+++..|..+|..++...+ .+|+. -.+..++++.|+.+.|...|
T Consensus 146 ~~~A~a~F~~Vl~~sp-~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSP-DNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhCC-cchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHH
Confidence 5899999998877432 2322222222334568899999999999777665 44544 34557788999999999999
Q ss_pred cccCCCCcchHHHHHHHH------HhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhC
Q 007329 154 GKMCDRDLFSWNVLIGGY------AKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFG 227 (608)
Q Consensus 154 ~~~~~~~~~~~~~li~~~------~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 227 (608)
....+-|+...++++... -....+..++.++......+ +-|+...+.|..-+.-.|++..+..+...++...
T Consensus 223 ~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n--~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t 300 (1018)
T KOG2002|consen 223 ERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN--NENPVALNHLANHFYFKKDYERVWHLAEHAIKNT 300 (1018)
T ss_pred HHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc--CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh
Confidence 999776665555554322 12344667888888877665 5677788889999999999999999999998764
Q ss_pred CCC--chhHHHHHHHHHHhcCCHHHHHHHHccCCCC---C-HhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-hhH
Q 007329 228 YEA--DVDVVNALITMYVKCGDLVRARLVFDGMPKR---D-RISWNAMISGYFENGEYMKGLMLFIMMREVLVDPD-FMT 300 (608)
Q Consensus 228 ~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~ 300 (608)
..- -...|--+.++|-..|++++|...|.+..+. + +..+--+.+.|.+.|+.+.+...|+...+. .|| ..|
T Consensus 301 ~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~et 378 (1018)
T KOG2002|consen 301 ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYET 378 (1018)
T ss_pred hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--CcchHHH
Confidence 221 2335777899999999999999999877654 2 445666889999999999999999999875 344 456
Q ss_pred HHHHHHHHhhcC----ChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCC--------CCChhhHH
Q 007329 301 LSSVISASELVG----DEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRME--------SKDVVSWT 368 (608)
Q Consensus 301 ~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~ 368 (608)
...+-..|...+ ..+.|..++....+.- +.|...|-.+...+...+-+.. +.+|.... ...+...|
T Consensus 379 m~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LN 456 (1018)
T KOG2002|consen 379 MKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLN 456 (1018)
T ss_pred HHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHH
Confidence 666666666554 4566666666666553 5566677777776666544333 44443332 25677889
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHC---CCCCCH-----H-HHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHH
Q 007329 369 TMISCYEGSVLPDKAVETYQMMEAE---GSMPDE-----I-TIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANT 439 (608)
Q Consensus 369 ~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~-----~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 439 (608)
.+...+...|++++|...|...... -..+|. . +--.+.......++.+.|.+.|..+.+.. +.-+..|-.
T Consensus 457 Nvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylR 535 (1018)
T KOG2002|consen 457 NVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLR 535 (1018)
T ss_pred hHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHH
Confidence 9999999999999999999988765 223333 2 22334455566789999999999999765 333444555
Q ss_pred HHHHhHhcCCHHHHHHHHccCC---CCCcccHHHHHHHHHhCCCchHHHHHHHHhH--hCCCCCHHHHHHHHHHHhc---
Q 007329 440 LIDMYSKCKCIDKALEVFHQIP---DKNVISWTSIILGLRLNNRSFEALIFFRKMM--LNLKPNSVTLVSILSACAR--- 511 (608)
Q Consensus 440 li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~--~~~~p~~~~~~~ll~~~~~--- 511 (608)
+..+....+...+|...+.... +.++..|..+...+.+...+..|.+-|..+. ....+|..+..+|...|..
T Consensus 536 l~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~ 615 (1018)
T KOG2002|consen 536 LGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALH 615 (1018)
T ss_pred hhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhc
Confidence 5434444578889999998776 4567778888889999999999999888877 2234777777777776543
Q ss_pred ---------cCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcC
Q 007329 512 ---------IGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERG 578 (608)
Q Consensus 512 ---------~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g 578 (608)
.+..++|+++|.++++..+. +...-|-++-+++..|++++|.++|.++ ..+..+|-.+.+.|...|
T Consensus 616 ~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~ 694 (1018)
T KOG2002|consen 616 NPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQG 694 (1018)
T ss_pred ccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHH
Confidence 23567899999999988776 7788888999999999999999999998 446789999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCC
Q 007329 579 QGALAEEFFRKMIDSKGNWR 598 (608)
Q Consensus 579 ~~~~A~~~~~~m~~~g~~p~ 598 (608)
++-.|+++|+...+.-.+-+
T Consensus 695 qy~~AIqmYe~~lkkf~~~~ 714 (1018)
T KOG2002|consen 695 QYRLAIQMYENCLKKFYKKN 714 (1018)
T ss_pred HHHHHHHHHHHHHHHhcccC
Confidence 99999999999987744333
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.86 E-value=3.1e-17 Score=174.85 Aligned_cols=388 Identities=10% Similarity=-0.038 Sum_probs=218.4
Q ss_pred HHhcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCC---CCCHhHHHHHHHHHHhcCChhH
Q 007329 205 RTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMP---KRDRISWNAMISGYFENGEYMK 281 (608)
Q Consensus 205 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~ 281 (608)
......|+.++|++++....... +.+...+..+...+.+.|++++|.++|++.. ..+...+..++..+...|++++
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~e 101 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDE 101 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 33334444444444444443311 2223334444444444455555555444422 1233344444445555555555
Q ss_pred HHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCC
Q 007329 282 GLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMES 361 (608)
Q Consensus 282 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 361 (608)
|...+++..+.. +.+.. +..+...+...|+.++|...++++.+.. +.+...+..+...+...+..+.|++.++....
T Consensus 102 A~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~ 178 (765)
T PRK10049 102 ALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL 178 (765)
T ss_pred HHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC
Confidence 555555554431 11222 4444444455555555555555555442 22333334445555555555556555555444
Q ss_pred -CCh------hhHHHHHHHHH-----cCCCc---hHHHHHHHHHHHC-CCCCCHH-HHH----HHHHHHHccCChHHHHH
Q 007329 362 -KDV------VSWTTMISCYE-----GSVLP---DKAVETYQMMEAE-GSMPDEI-TIA----SVLSACACLGNLDLGIK 420 (608)
Q Consensus 362 -~~~------~~~~~li~~~~-----~~~~~---~~a~~~~~~m~~~-g~~p~~~-t~~----~ll~~~~~~~~~~~a~~ 420 (608)
|+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+. ..+..+...|++++|+.
T Consensus 179 ~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~ 258 (765)
T PRK10049 179 TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVIS 258 (765)
T ss_pred CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 110 01111122111 11223 5677777777653 2223221 111 11334456677888888
Q ss_pred HHHHHHHhCCC-CchhHHHHHHHHhHhcCCHHHHHHHHccCCCCCc-------ccHHHHHHHHHhCCCchHHHHHHHHhH
Q 007329 421 LHQLAMRTGLI-SYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNV-------ISWTSIILGLRLNNRSFEALIFFRKMM 492 (608)
Q Consensus 421 ~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~m~ 492 (608)
.|+.+.+.+.+ |+. ....+...|...|++++|+..|+++.+.+. ..+..+..++.+.|++++|.+.++++.
T Consensus 259 ~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~ 337 (765)
T PRK10049 259 EYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTI 337 (765)
T ss_pred HHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHh
Confidence 88877766522 221 222246677778888888888777653221 234445567778888888888888777
Q ss_pred hCCC------------CCH---HHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHH
Q 007329 493 LNLK------------PNS---VTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQF 557 (608)
Q Consensus 493 ~~~~------------p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 557 (608)
...+ |+. ..+..+...+...|++++|+++++++....+. +...+..++..+...|++++|++.+
T Consensus 338 ~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~~~lA~l~~~~g~~~~A~~~l 416 (765)
T PRK10049 338 NNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-NQGLRIDYASVLQARGWPRAAENEL 416 (765)
T ss_pred hcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 3322 231 24456667778889999999999988877655 5677888888888999999999999
Q ss_pred Hhc---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 558 NSN---ER-DVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 558 ~~~---~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
+++ .| +...+..++..+...|++++|..+++++++. .|++.
T Consensus 417 ~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~ 461 (765)
T PRK10049 417 KKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDP 461 (765)
T ss_pred HHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCH
Confidence 887 44 4667777777888889999999999999885 77766
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.85 E-value=1.8e-17 Score=173.54 Aligned_cols=417 Identities=12% Similarity=-0.009 Sum_probs=254.6
Q ss_pred hHHHHHhhhcCChhhHHHHHcccC--CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCC
Q 007329 134 NAFLSMFVKFGDLGHAWYVFGKMC--DRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVP 211 (608)
Q Consensus 134 ~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~ 211 (608)
......+.+.|++++|+..|++.. .|+...|..+..+|.+.|++++|++.++...+.. +.+...+..+..++...|
T Consensus 131 k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 131 KEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcC
Confidence 344555666677777777776652 2555566666666777777777777777766543 334445666666677777
Q ss_pred ChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 007329 212 DLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMRE 291 (608)
Q Consensus 212 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 291 (608)
++++|..-+......+...+... ..++..+........+...++.-.. +...+..+.. |...........-+..-.+
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~a~~~~~~~l~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNEQS-AQAVERLLKKFAESKAKEILETKPE-NLPSVTFVGN-YLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccHHH-HHHHHHHHHHHHHHHHHHHHhcCCC-CCCCHHHHHH-HHHHccCCcchhhhhcccc
Confidence 77777666655544332212111 1111111111112333333333222 1112221211 1111111111111111110
Q ss_pred CCCCCCh-hHHHHHHH---HHhhcCChhhHHHHHHHHHHhC-C-CCCcccchHHHHHHHhcCChHHHHHHHhhCCC--CC
Q 007329 292 VLVDPDF-MTLSSVIS---ASELVGDEKLGREVHGYVIKMG-F-SDDVSVCNPLIKMYLSFGNREEGEKVFSRMES--KD 363 (608)
Q Consensus 292 ~~~~p~~-~~~~~ll~---~~~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~ 363 (608)
..+.. ..+..+.. .....+++++|.+.|+...+.+ . +.....++.+...+...|++++|...|++..+ |+
T Consensus 286 --~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~ 363 (615)
T TIGR00990 286 --LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR 363 (615)
T ss_pred --cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 11110 00111110 0123467778888888877654 1 22345667777778888888888888888765 33
Q ss_pred -hhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 007329 364 -VVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLID 442 (608)
Q Consensus 364 -~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 442 (608)
...|..+...+...|++++|+..|++..+.. .-+...+..+...+...|++++|...|+...+.. +.+...+..+..
T Consensus 364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~ 441 (615)
T TIGR00990 364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGV 441 (615)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHH
Confidence 4567777778888888889998888887763 2346777788888888899999999888888765 445666777888
Q ss_pred HhHhcCCHHHHHHHHccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHH-------HHHHHHHHHhcc
Q 007329 443 MYSKCKCIDKALEVFHQIPD---KNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSV-------TLVSILSACARI 512 (608)
Q Consensus 443 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~-------~~~~ll~~~~~~ 512 (608)
++.+.|++++|+..|++..+ .+...|+.+...+...|++++|++.|++...-.+.+.. .++..+..+...
T Consensus 442 ~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~ 521 (615)
T TIGR00990 442 TQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWK 521 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHh
Confidence 88888999999998887653 34567888888889999999999999988722111111 111122233346
Q ss_pred CcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 513 GALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 513 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
|++++|.++++++.+..+. +...+..++.+|...|++++|.+.|+++
T Consensus 522 ~~~~eA~~~~~kAl~l~p~-~~~a~~~la~~~~~~g~~~eAi~~~e~A 568 (615)
T TIGR00990 522 QDFIEAENLCEKALIIDPE-CDIAVATMAQLLLQQGDVDEALKLFERA 568 (615)
T ss_pred hhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 8999999999998876543 3456788899999999999999999887
No 22
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.85 E-value=8.1e-17 Score=145.97 Aligned_cols=436 Identities=15% Similarity=0.081 Sum_probs=288.8
Q ss_pred HHHHHhCCChHHHHHHHHHHhhcCCCCChhhHHHHHH--HhhccCCchhhh-HHHHHHHHhcCCcchhHHhHHHHHhhhc
Q 007329 67 LNELCLNGSLEQALKYLDSMQELNICVDEDALVNLVR--LCEWKRGYDEGL-YLHSVVSKTMSHLSVRLGNAFLSMFVKF 143 (608)
Q Consensus 67 l~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll~--~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 143 (608)
+.....+|.+.++--+|+.|.+.|+..+...-..+++ .|.+..+..-+. +-|-.|.+.|.. +..+ .+.
T Consensus 122 L~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~s--------WK~ 192 (625)
T KOG4422|consen 122 LLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSS--------WKS 192 (625)
T ss_pred HHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-cccc--------ccc
Confidence 3345678889999999999999999888888777776 333444444221 222223333322 1222 345
Q ss_pred CChhhHHHHHcccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHH
Q 007329 144 GDLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHV 223 (608)
Q Consensus 144 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 223 (608)
|++.+ ++-+.......+|..||.++|+--..+.|.+++++..... .+.+..+||.+|.+-.-. ..++++.+|
T Consensus 193 G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k-~kv~~~aFN~lI~~~S~~----~~K~Lv~EM 264 (625)
T KOG4422|consen 193 GAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAK-GKVYREAFNGLIGASSYS----VGKKLVAEM 264 (625)
T ss_pred ccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhh-heeeHHhhhhhhhHHHhh----ccHHHHHHH
Confidence 65544 4444445566789999999999999999999999988776 689999999999875432 238899999
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHH
Q 007329 224 IRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSS 303 (608)
Q Consensus 224 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 303 (608)
+...+.||..|+|+++.+..+.|+++.|.+. |.+++.+|++-|+.|...+|..
T Consensus 265 isqkm~Pnl~TfNalL~c~akfg~F~~ar~a---------------------------alqil~EmKeiGVePsLsSyh~ 317 (625)
T KOG4422|consen 265 ISQKMTPNLFTFNALLSCAAKFGKFEDARKA---------------------------ALQILGEMKEIGVEPSLSSYHL 317 (625)
T ss_pred HHhhcCCchHhHHHHHHHHHHhcchHHHHHH---------------------------HHHHHHHHHHhCCCcchhhHHH
Confidence 9999999999999999999999999887653 5677889999999999999999
Q ss_pred HHHHHhhcCChhh-HHHHHHHHHHh----CCCC----CcccchHHHHHHHhcCChHHHHHHHhhCCC--------C---C
Q 007329 304 VISASELVGDEKL-GREVHGYVIKM----GFSD----DVSVCNPLIKMYLSFGNREEGEKVFSRMES--------K---D 363 (608)
Q Consensus 304 ll~~~~~~~~~~~-a~~~~~~~~~~----~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~---~ 363 (608)
+|..+++.++..+ +..++.++... .+.| |...|...|..|....+.+-|..+-.-+.. + .
T Consensus 318 iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~ 397 (625)
T KOG4422|consen 318 IIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHR 397 (625)
T ss_pred HHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHH
Confidence 9998888887644 44444444432 2222 444566777888888888888777665543 1 2
Q ss_pred hhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 007329 364 VVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDM 443 (608)
Q Consensus 364 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 443 (608)
..-|..+....|+....+.-...|+.|.-.-+-|+..+...++++..-.|.++-..+++.+++..|.........-+...
T Consensus 398 ~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~ 477 (625)
T KOG4422|consen 398 NFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILML 477 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 23466677788888889999999999999888999999999999999999999999999999988865555444444444
Q ss_pred hHhcC-CH-HHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHH-HHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 007329 444 YSKCK-CI-DKALEVFHQIPDKNVISWTSIILGLRLNNRSFEAL-IFFRKMMLNLKPNSVTLVSILSACARIGALMCGKE 520 (608)
Q Consensus 444 ~~~~g-~~-~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 520 (608)
+++.. +. .-+.+- +.....-++ -++.++. ..-.+|. .........+..+..+.+.|..++|.+
T Consensus 478 L~~~k~hp~tp~r~Q-----------l~~~~ak~a--ad~~e~~e~~~~R~r-~~~~~~t~l~~ia~Ll~R~G~~qkA~e 543 (625)
T KOG4422|consen 478 LARDKLHPLTPEREQ-----------LQVAFAKCA--ADIKEAYESQPIRQR-AQDWPATSLNCIAILLLRAGRTQKAWE 543 (625)
T ss_pred HhcCCCCCCChHHHH-----------HHHHHHHHH--HHHHHHHHhhHHHHH-hccCChhHHHHHHHHHHHcchHHHHHH
Confidence 44332 11 000000 011110000 0111111 1111222 233334445555555666666666666
Q ss_pred HHHHHHHhCC-CCCccHHH---HHHHHhHhcCCHHHHHHHHHhc
Q 007329 521 IHAHALRIGV-AFDGFLPN---ALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 521 ~~~~~~~~~~-~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
++..+.+.+- .|-....+ -|++.-.+.++...|..+++-+
T Consensus 544 ~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 544 MLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 6666643322 22233333 3444445556666666666665
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.85 E-value=7.4e-18 Score=175.64 Aligned_cols=316 Identities=8% Similarity=-0.022 Sum_probs=130.2
Q ss_pred HHHHHhcCCHHHHHHHHccCCC---CCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhhcCCh
Q 007329 239 ITMYVKCGDLVRARLVFDGMPK---RDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPD-FMTLSSVISASELVGDE 314 (608)
Q Consensus 239 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~ 314 (608)
+..+.+.|++++|..+++.... .+...+..++.+....|++++|...++++... .|+ ...+..+...+...|++
T Consensus 49 ~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~~~~a~~~la~~l~~~g~~ 126 (656)
T PRK15174 49 AIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAV--NVCQPEDVLLVASVLLKSKQY 126 (656)
T ss_pred HHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCH
Confidence 3334444555555554444432 13333333444444455555555555554442 222 22333334444444555
Q ss_pred hhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCC--CCh-hhHHHHHHHHHcCCCchHHHHHHHHHH
Q 007329 315 KLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMES--KDV-VSWTTMISCYEGSVLPDKAVETYQMME 391 (608)
Q Consensus 315 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~ 391 (608)
++|...++.+.+.. +.+...+..+...+...|++++|...++.+.. |+. ..+..+ ..+...|++++|...++.+.
T Consensus 127 ~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l 204 (656)
T PRK15174 127 ATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARALL 204 (656)
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHH
Confidence 55555555444432 22333444444444445555554444443321 111 111111 22444444455544444444
Q ss_pred HCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHH----HHHHHccCCC--C-C
Q 007329 392 AEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDK----ALEVFHQIPD--K-N 464 (608)
Q Consensus 392 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~--~-~ 464 (608)
.....++...+..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++ |...|++..+ | +
T Consensus 205 ~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~ 283 (656)
T PRK15174 205 PFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDN 283 (656)
T ss_pred hcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCC
Confidence 33222222233333344444444444444444444333 2233334444444444444443 3444443331 1 2
Q ss_pred cccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHh
Q 007329 465 VISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMY 544 (608)
Q Consensus 465 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 544 (608)
...+..+...+.+.|++++|+..+++.....+.+...+..+..++...|++++|...++.+.+.++. +...+..+..++
T Consensus 284 ~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~~~~a~al 362 (656)
T PRK15174 284 VRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TSKWNRYAAAAL 362 (656)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHH
Confidence 2334444444444444444444444444222223333444444444444444444444444433222 111122233344
Q ss_pred HhcCCHHHHHHHHHhc
Q 007329 545 VRCGRMKPAWNQFNSN 560 (608)
Q Consensus 545 ~~~g~~~~A~~~~~~~ 560 (608)
...|+.++|.+.|++.
T Consensus 363 ~~~G~~deA~~~l~~a 378 (656)
T PRK15174 363 LQAGKTSEAESVFEHY 378 (656)
T ss_pred HHCCCHHHHHHHHHHH
Confidence 4444444444444443
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=1e-16 Score=170.89 Aligned_cols=429 Identities=10% Similarity=-0.014 Sum_probs=226.3
Q ss_pred hHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhhcCChhhHHHHHcccC---CCCcchHHHHHHHHHh
Q 007329 97 ALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFGDLGHAWYVFGKMC---DRDLFSWNVLIGGYAK 173 (608)
Q Consensus 97 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~ 173 (608)
...-.+.+....|+.++|++++....... +.+...+..+...+.+.|++++|..++++.. ..+...+..+...+..
T Consensus 17 ~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 17 QIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 33344444455555555555555544422 1223334555555555566666666665541 1233445555556666
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 007329 174 AGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARL 253 (608)
Q Consensus 174 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 253 (608)
.|++++|+..+++..+.. +.+.. +..+..++...|+.++|...++++.+.. +.+...+..+..++...|..++|++
T Consensus 96 ~g~~~eA~~~l~~~l~~~--P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGA--PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred CCCHHHHHHHHHHHHHhC--CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHH
Confidence 666666666666666543 23333 5555556666666666666666666653 2244444556666667777777777
Q ss_pred HHccCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCCh---hhHHHHHHHHHHh-CC
Q 007329 254 VFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDE---KLGREVHGYVIKM-GF 329 (608)
Q Consensus 254 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~-~~ 329 (608)
.++.... ++.....+ ....+...++-. +.......+++ ++|.+.++.+.+. ..
T Consensus 172 ~l~~~~~-~p~~~~~l--------~~~~~~~~~r~~--------------~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~ 228 (765)
T PRK10049 172 AIDDANL-TPAEKRDL--------EADAAAELVRLS--------------FMPTRSEKERYAIADRALAQYDALEALWHD 228 (765)
T ss_pred HHHhCCC-CHHHHHHH--------HHHHHHHHHHhh--------------cccccChhHHHHHHHHHHHHHHHHHhhccc
Confidence 7776654 22100000 000000000000 00000111122 4455555555543 11
Q ss_pred CCCccc-ch----HHHHHHHhcCChHHHHHHHhhCCCCC---hh-hHHHHHHHHHcCCCchHHHHHHHHHHHCCCCC---
Q 007329 330 SDDVSV-CN----PLIKMYLSFGNREEGEKVFSRMESKD---VV-SWTTMISCYEGSVLPDKAVETYQMMEAEGSMP--- 397 (608)
Q Consensus 330 ~~~~~~-~~----~l~~~~~~~~~~~~a~~~~~~~~~~~---~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p--- 397 (608)
.|+... +. ..+..+...|++++|+..|+.+.+.+ +. .-..+...|...|++++|+..|+++.......
T Consensus 229 ~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~ 308 (765)
T PRK10049 229 NPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADL 308 (765)
T ss_pred CCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCC
Confidence 222111 10 01223345566677777666665421 11 11113446666666777777666665432110
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCC---cccHHHHHHH
Q 007329 398 DEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKN---VISWTSIILG 474 (608)
Q Consensus 398 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~ 474 (608)
.......+..++...|++++|.++++.+.+.. ++....+.. ....|+ ...+..+...
T Consensus 309 ~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~-P~~~~~~~~-------------------~~~~p~~~~~~a~~~~a~~ 368 (765)
T PRK10049 309 SDEELADLFYSLLESENYPGALTVTAHTINNS-PPFLRLYGS-------------------PTSIPNDDWLQGQSLLSQV 368 (765)
T ss_pred ChHHHHHHHHHHHhcccHHHHHHHHHHHhhcC-CceEeecCC-------------------CCCCCCchHHHHHHHHHHH
Confidence 12334444555566666666666666655432 111100000 000122 1234456667
Q ss_pred HHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHH
Q 007329 475 LRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAW 554 (608)
Q Consensus 475 ~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 554 (608)
+...|+.++|++.++++....+.+...+..+...+...|++++|++.++++.+..+. +...+..++..+.+.|++++|.
T Consensus 369 l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd-~~~l~~~~a~~al~~~~~~~A~ 447 (765)
T PRK10049 369 AKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPR-NINLEVEQAWTALDLQEWRQMD 447 (765)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCCHHHHH
Confidence 778888888888888888556667777888888888888888888888888876543 4556666777788888888888
Q ss_pred HHHHhc---CCCHHHHHHHHHHH
Q 007329 555 NQFNSN---ERDVSAWNILLTGY 574 (608)
Q Consensus 555 ~~~~~~---~~~~~~~~~l~~~~ 574 (608)
.+++++ .|+......+-..+
T Consensus 448 ~~~~~ll~~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 448 VLTDDVVAREPQDPGVQRLARAR 470 (765)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHH
Confidence 888887 55544444443333
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.83 E-value=5.4e-16 Score=161.93 Aligned_cols=448 Identities=10% Similarity=-0.005 Sum_probs=262.0
Q ss_pred HHHHHHHhCCChHHHHHHHHHHhhcCCCCCh--hhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhh
Q 007329 65 SRLNELCLNGSLEQALKYLDSMQELNICVDE--DALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVK 142 (608)
Q Consensus 65 ~ll~~~~~~~~~~~A~~~~~~~~~~g~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (608)
..+....++|+++.|+..|++..+.. |+. ..+ .++..+...|+.++|+..++...... .........+...+..
T Consensus 39 ~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~ 114 (822)
T PRK14574 39 DSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRN 114 (822)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHH
Confidence 34446678888899999998887744 432 233 77777777788888888888777211 1122333333556777
Q ss_pred cCChhhHHHHHcccCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHH
Q 007329 143 FGDLGHAWYVFGKMCD--R-DLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEV 219 (608)
Q Consensus 143 ~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 219 (608)
.|++++|+++|+++.+ | +...+..++..+...++.++|++.++++.+. .|+...+..++..+...++..+|.+.
T Consensus 115 ~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~---dp~~~~~l~layL~~~~~~~~~AL~~ 191 (822)
T PRK14574 115 EKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER---DPTVQNYMTLSYLNRATDRNYDALQA 191 (822)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc---CcchHHHHHHHHHHHhcchHHHHHHH
Confidence 7888888888888743 2 3455666677777888888888888887653 45555554444444445555557778
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh
Q 007329 220 HVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKR-DRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDF 298 (608)
Q Consensus 220 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 298 (608)
++++.+.. +.+...+..+..++.+.|-...|.++..+-+.- +...+.-+ . .+.|.+ ++..+..++.
T Consensus 192 ~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l-~-------~~~~a~----~vr~a~~~~~ 258 (822)
T PRK14574 192 SSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL-E-------RDAAAE----QVRMAVLPTR 258 (822)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH-H-------HHHHHH----HHhhcccccc
Confidence 88777774 445666667777777777777777766654421 11111110 0 011111 1111111100
Q ss_pred hHHHHHHHHHhhcCCh---hhHHHHHHHHHHh-CCCCCc-ccchHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHH
Q 007329 299 MTLSSVISASELVGDE---KLGREVHGYVIKM-GFSDDV-SVCNPLIKMYLSFGNREEGEKVFSRMESKDVVSWTTMISC 373 (608)
Q Consensus 299 ~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~-~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~ 373 (608)
. ...++ +.|..-++.+... +-.|.. ..|. ...--.+.+
T Consensus 259 ~----------~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~---------------------------~~~~Drl~a 301 (822)
T PRK14574 259 S----------ETERFDIADKALADYQNLLTRWGKDPEAQADYQ---------------------------RARIDRLGA 301 (822)
T ss_pred c----------chhhHHHHHHHHHHHHHHHhhccCCCccchHHH---------------------------HHHHHHHHH
Confidence 0 00111 2222222222221 101110 0000 011122345
Q ss_pred HHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhC-----CCCchhHHHHHHHHhHhcC
Q 007329 374 YEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTG-----LISYIIIANTLIDMYSKCK 448 (608)
Q Consensus 374 ~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g 448 (608)
+...|++.++++.|+.|...|.+....+-..+..+|...+++++|+.+++.+.... ..++......|..+|...+
T Consensus 302 L~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e 381 (822)
T PRK14574 302 LLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESE 381 (822)
T ss_pred HHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcc
Confidence 56666777777777777766655445566667777777777777777777665432 1223333456666777777
Q ss_pred CHHHHHHHHccCCCCCc------------------ccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHh
Q 007329 449 CIDKALEVFHQIPDKNV------------------ISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACA 510 (608)
Q Consensus 449 ~~~~A~~~~~~~~~~~~------------------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~ 510 (608)
++++|..+++++.+..+ ..+..++..+...|+..+|++.++++...-|-|......+...+.
T Consensus 382 ~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~ 461 (822)
T PRK14574 382 QLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYL 461 (822)
T ss_pred cHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 77777777776653111 122334566777788888888888887556667777777778888
Q ss_pred ccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc---CCCHHHHHHH
Q 007329 511 RIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN---ERDVSAWNIL 570 (608)
Q Consensus 511 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~l 570 (608)
..|.+.+|++.++.+....+. +..+....+.++...|++++|..+.++. .|+......|
T Consensus 462 ~Rg~p~~A~~~~k~a~~l~P~-~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~l 523 (822)
T PRK14574 462 ARDLPRKAEQELKAVESLAPR-SLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQEL 523 (822)
T ss_pred hcCCHHHHHHHHHHHhhhCCc-cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHHHH
Confidence 888888888888766665443 4555566777777778888887777666 4444433333
No 26
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.83 E-value=3.8e-17 Score=170.31 Aligned_cols=352 Identities=10% Similarity=-0.045 Sum_probs=261.1
Q ss_pred HhcCChhHHHHHHHHHHhcCC-CCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 007329 172 AKAGFFDEALSLYQRMFWVGG-VKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVR 250 (608)
Q Consensus 172 ~~~g~~~~a~~~~~~m~~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 250 (608)
.+..+++...-+|....++-. -.-+..-...++..+.+.|++++|..+++..+.....+ ...+..++.++...|++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHH
Confidence 344455554444444332210 12233445567778889999999999999988876443 4445555566777999999
Q ss_pred HHHHHccCCCC---CHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-ChhHHHHHHHHHhhcCChhhHHHHHHHHHH
Q 007329 251 ARLVFDGMPKR---DRISWNAMISGYFENGEYMKGLMLFIMMREVLVDP-DFMTLSSVISASELVGDEKLGREVHGYVIK 326 (608)
Q Consensus 251 A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 326 (608)
|...++++... +...+..+...+.+.|++++|.+.+++.... .| +...+..+...+...|++++|...++.+..
T Consensus 95 A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 95 VLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 99999988652 6678888888999999999999999998875 34 455677788888999999999999988776
Q ss_pred hCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCCC----ChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHH
Q 007329 327 MGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESK----DVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITI 402 (608)
Q Consensus 327 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~ 402 (608)
.. +.+...+..+ ..+...|++++|...++.+.+. +...+..+...+...|++++|+..+++..+.. ..+...+
T Consensus 173 ~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~ 249 (656)
T PRK15174 173 EV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALR 249 (656)
T ss_pred hC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence 64 2233333333 3478889999999999887652 23344555678889999999999999988764 2356677
Q ss_pred HHHHHHHHccCChHH----HHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC--C-CcccHHHHHHHH
Q 007329 403 ASVLSACACLGNLDL----GIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPD--K-NVISWTSIILGL 475 (608)
Q Consensus 403 ~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~ 475 (608)
..+...+...|++++ |...++.+.+.. +.+...+..+...+.+.|++++|...+++..+ | +...+..+..++
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l 328 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARAL 328 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 778888899999885 788888888765 45677888899999999999999999988763 3 345677788889
Q ss_pred HhCCCchHHHHHHHHhHhCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHhCCC
Q 007329 476 RLNNRSFEALIFFRKMMLNLKPNS-VTLVSILSACARIGALMCGKEIHAHALRIGVA 531 (608)
Q Consensus 476 ~~~~~~~~A~~~~~~m~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 531 (608)
.+.|++++|+..|+++... .|+. ..+..+..++...|+.++|...++++.+..+.
T Consensus 329 ~~~G~~~eA~~~l~~al~~-~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 329 RQVGQYTAASDEFVQLARE-KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHCCCHHHHHHHHHHHHHh-CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 9999999999999988833 3443 34444567788899999999999998876554
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.82 E-value=6.1e-16 Score=161.56 Aligned_cols=434 Identities=11% Similarity=0.048 Sum_probs=300.3
Q ss_pred HhhhcCChhhHHHHHcccCCCCcc---hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhh
Q 007329 139 MFVKFGDLGHAWYVFGKMCDRDLF---SWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKR 215 (608)
Q Consensus 139 ~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 215 (608)
...+.|+++.|+..|++..+.++. ....++..+...|+.++|+.++++.... .+........+...+...|++++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p--~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS--MNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC--CCCCHHHHHHHHHHHHHcCCHHH
Confidence 356889999999999888553222 2337788888889999999988887511 12222223333456777888888
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHH--hcCChhHHHHHHHHHHHCC
Q 007329 216 GKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYF--ENGEYMKGLMLFIMMREVL 293 (608)
Q Consensus 216 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~--~~~~~~~a~~~~~~m~~~~ 293 (608)
|.++++++.+.. +.+...+..++..|...++.++|++.++++.+.++.....+..++. ..++..+|++.++++.+..
T Consensus 121 Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 121 ALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 888888888875 3345666677888888888888888888887654432222333333 3455555888888887753
Q ss_pred CCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCCCCh---hhHHHH
Q 007329 294 VDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDV---VSWTTM 370 (608)
Q Consensus 294 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l 370 (608)
+-+...+..+..++.+.|-...|.++..+ .|+..+-..... . +.+.|.+..+....+.. ..|.
T Consensus 200 -P~n~e~~~~~~~~l~~~~~~~~a~~l~~~------~p~~f~~~~~~~--l---~~~~~a~~vr~a~~~~~~~~~r~~-- 265 (822)
T PRK14574 200 -PTSEEVLKNHLEILQRNRIVEPALRLAKE------NPNLVSAEHYRQ--L---ERDAAAEQVRMAVLPTRSETERFD-- 265 (822)
T ss_pred -CCCHHHHHHHHHHHHHcCCcHHHHHHHHh------CccccCHHHHHH--H---HHHHHHHHHhhcccccccchhhHH--
Confidence 22455556666777777777777766554 232222111111 0 11222222222111100 0011
Q ss_pred HHHHHcCCCchHHHHHHHHHHHC-CCCCCHH-----HHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHh
Q 007329 371 ISCYEGSVLPDKAVETYQMMEAE-GSMPDEI-----TIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMY 444 (608)
Q Consensus 371 i~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~-----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 444 (608)
-.+.|+.-++.+... +-.|... ...-.+.++...|+..++++.++.+...+.+....+-..+.++|
T Consensus 266 --------~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~aday 337 (822)
T PRK14574 266 --------IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAY 337 (822)
T ss_pred --------HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHH
Confidence 125566666665542 2224322 22234567788999999999999999988776777889999999
Q ss_pred HhcCCHHHHHHHHccCCCCC---------cccHHHHHHHHHhCCCchHHHHHHHHhHhCCC------------C--CHH-
Q 007329 445 SKCKCIDKALEVFHQIPDKN---------VISWTSIILGLRLNNRSFEALIFFRKMMLNLK------------P--NSV- 500 (608)
Q Consensus 445 ~~~g~~~~A~~~~~~~~~~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~------------p--~~~- 500 (608)
...+++++|..+++.+..++ ......|..+|...+++++|..+++++....+ | |-.
T Consensus 338 l~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~ 417 (822)
T PRK14574 338 IDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIE 417 (822)
T ss_pred HhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHH
Confidence 99999999999999875321 22246788999999999999999999983222 2 222
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHh
Q 007329 501 TLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAE 576 (608)
Q Consensus 501 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~ 576 (608)
.+..++..+...|++.+|++.++++....+. |......+.+++...|...+|.+.++.+ +.+..+....+.++..
T Consensus 418 ~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~ 496 (822)
T PRK14574 418 GQTLLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMA 496 (822)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHh
Confidence 2344567788999999999999999888776 8899999999999999999999999887 4466777888999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCch
Q 007329 577 RGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 577 ~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
.|++.+|..+.+.+.+. .|++.
T Consensus 497 l~e~~~A~~~~~~l~~~--~Pe~~ 518 (822)
T PRK14574 497 LQEWHQMELLTDDVISR--SPEDI 518 (822)
T ss_pred hhhHHHHHHHHHHHHhh--CCCch
Confidence 99999999999999885 77765
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=2.2e-15 Score=136.83 Aligned_cols=415 Identities=17% Similarity=0.175 Sum_probs=288.4
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhc--CCCChhh-HHHHHHHHHHhCCCCchhHHHHH
Q 007329 162 FSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCG--GVPDLKR-GKEVHVHVIRFGYEADVDVVNAL 238 (608)
Q Consensus 162 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~--~~~~~~~-a~~~~~~~~~~g~~~~~~~~~~l 238 (608)
.+-|.|+. ....|...++.-+|+.|...| ++.+...-..+++..+ ...++-- -.+.|-.|.+.| +.+..+|
T Consensus 117 ~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~-~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 117 ETENNLLK-MISSREVKDSCILYERMRSEN-VDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred cchhHHHH-HHhhcccchhHHHHHHHHhcC-CCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 34555554 356788888999999998887 6666665555554433 2222221 223344444444 2223332
Q ss_pred HHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHH
Q 007329 239 ITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGR 318 (608)
Q Consensus 239 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 318 (608)
+.|++.+ ++-+...++..+|..||.++|+-...+.|.+++++-.....+.+..+||.+|.+..-. ...
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K 258 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGK 258 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccH
Confidence 4455544 5555666677899999999999999999999999999888899999999999875433 237
Q ss_pred HHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHH----HHhhCCC----CChhhHHHHHHHHHcCCCchH-HHHHHHH
Q 007329 319 EVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEK----VFSRMES----KDVVSWTTMISCYEGSVLPDK-AVETYQM 389 (608)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~~~~----~~~~~~~~li~~~~~~~~~~~-a~~~~~~ 389 (608)
+++.+|....+.||..|+|+++.+..+.|+++.|.+ ++.+|++ |...+|..+|..+++.++..+ |..++.+
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~d 338 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIND 338 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHH
Confidence 888999999999999999999999999998877654 4555554 888899999999999888754 4445555
Q ss_pred HHH----CCCC---C-CHHHHHHHHHHHHccCChHHHHHHHHHHHHh----CCCCc---hhHHHHHHHHhHhcCCHHHHH
Q 007329 390 MEA----EGSM---P-DEITIASVLSACACLGNLDLGIKLHQLAMRT----GLISY---IIIANTLIDMYSKCKCIDKAL 454 (608)
Q Consensus 390 m~~----~g~~---p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~---~~~~~~li~~~~~~g~~~~A~ 454 (608)
++. +.++ | |..-|...+..|.+..+.+.|.++....... -+.|+ ..-|..+..+.++....+.-.
T Consensus 339 I~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~ 418 (625)
T KOG4422|consen 339 IQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTL 418 (625)
T ss_pred HHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 543 2233 3 3456778888999999999999988766531 12232 234566778888889999999
Q ss_pred HHHccCCC----CCcccHHHHHHHHHhCCCchHHHHHHHHhH-hCCCCCHHHHHHHHHHHhccC-c---H-----HH---
Q 007329 455 EVFHQIPD----KNVISWTSIILGLRLNNRSFEALIFFRKMM-LNLKPNSVTLVSILSACARIG-A---L-----MC--- 517 (608)
Q Consensus 455 ~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~-~~~~p~~~~~~~ll~~~~~~~-~---~-----~~--- 517 (608)
..++.|.. |+..+...++.+..-.|+++-.-++|..+. .|..-+.....-++.-+++.. . . ..
T Consensus 419 ~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~a 498 (625)
T KOG4422|consen 419 KWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFA 498 (625)
T ss_pred HHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHH
Confidence 99998873 566677778888888899998999999988 665555555555555555443 1 1 11
Q ss_pred --HHHHHHHH-----HHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc---------CCCHHHHHHHHHHHHhcCCHH
Q 007329 518 --GKEIHAHA-----LRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN---------ERDVSAWNILLTGYAERGQGA 581 (608)
Q Consensus 518 --a~~~~~~~-----~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~ 581 (608)
|..+++.. +....+..+...+...-.+.|.|..++|.+++.-. .|.......++..-.+.++..
T Consensus 499 k~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~sps 578 (625)
T KOG4422|consen 499 KCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPS 578 (625)
T ss_pred HHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHH
Confidence 11111111 11123345566777888899999999999999776 223334456777788889999
Q ss_pred HHHHHHHHHHHcC
Q 007329 582 LAEEFFRKMIDSK 594 (608)
Q Consensus 582 ~A~~~~~~m~~~g 594 (608)
.|.++++-|.+.+
T Consensus 579 qA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 579 QAIEVLQLASAFN 591 (625)
T ss_pred HHHHHHHHHHHcC
Confidence 9999999987654
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.77 E-value=1.9e-16 Score=144.66 Aligned_cols=496 Identities=15% Similarity=0.115 Sum_probs=280.4
Q ss_pred CcchHHHHHHHHhCCChHHHHHHHHHHhhc----CCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhH-Hh
Q 007329 60 TKNPNSRLNELCLNGSLEQALKYLDSMQEL----NICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRL-GN 134 (608)
Q Consensus 60 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~----g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~ 134 (608)
...+...+.---..|+-+.|+---++-... ++.....++..|..-|.......+|+..++.+.+...-|+.-. -.
T Consensus 162 ~~~~k~aldkakdagrker~lvk~req~~~~e~inldltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkm 241 (840)
T KOG2003|consen 162 CGDFKEALDKAKDAGRKERALVKHREQQGLPEMINLDLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKM 241 (840)
T ss_pred hhhHHHHHHHHHhcchhHHHHHHHHHhccchhhccccchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeee
Confidence 344666666666677777766544432111 2333444455555666667778888888888877766555432 23
Q ss_pred HHHHHhhhcCChhhHHHHHcccCC--C------CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHH
Q 007329 135 AFLSMFVKFGDLGHAWYVFGKMCD--R------DLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRT 206 (608)
Q Consensus 135 ~l~~~~~~~g~~~~A~~~~~~~~~--~------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~ 206 (608)
.+.+.+.+...+.+|++.++.... | .....+.+.-.+.+.|+++.|+..|+...+. .|+..+-..++-+
T Consensus 242 nigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~---~pn~~a~~nl~i~ 318 (840)
T KOG2003|consen 242 NIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE---APNFIAALNLIIC 318 (840)
T ss_pred eecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh---CccHHhhhhhhhh
Confidence 345677788888888888765422 2 1234555556678889999999999888764 5887776677777
Q ss_pred hcCCCChhhHHHHHHHHHHhCCCCchhHH--------HHHHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcC-
Q 007329 207 CGGVPDLKRGKEVHVHVIRFGYEADVDVV--------NALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENG- 277 (608)
Q Consensus 207 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~--------~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~- 277 (608)
+...|+-++..+.|..|+.....+|..-| ..|++--.+.. .+.-.-+..
T Consensus 319 ~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd----------------------~lk~~ek~~k 376 (840)
T KOG2003|consen 319 AFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKND----------------------HLKNMEKENK 376 (840)
T ss_pred heecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhH----------------------HHHHHHHhhh
Confidence 77788999999999998876554443322 11111111111 111111111
Q ss_pred -ChhHHHHHHHHHHHCCCCCChhH-HHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHH
Q 007329 278 -EYMKGLMLFIMMREVLVDPDFMT-LSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKV 355 (608)
Q Consensus 278 -~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 355 (608)
+.++++-.-.++..--+.|+... +.-.+...-.+...+.|.++ --.-...|.+.|+++.|.++
T Consensus 377 a~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dl---------------ei~ka~~~lk~~d~~~aiei 441 (840)
T KOG2003|consen 377 ADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDL---------------EINKAGELLKNGDIEGAIEI 441 (840)
T ss_pred hhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhh---------------hhhHHHHHHhccCHHHHHHH
Confidence 11122211112222112222110 11111111111111111110 00112345566777777776
Q ss_pred HhhCCCCChhhHHHHHH-----HHHc-CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhC
Q 007329 356 FSRMESKDVVSWTTMIS-----CYEG-SVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTG 429 (608)
Q Consensus 356 ~~~~~~~~~~~~~~li~-----~~~~-~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 429 (608)
++-+.+.|..+-++... -|.+ ..++..|...-+...... +-+......-.+.....|++++|.+.+++.....
T Consensus 442 lkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nd 520 (840)
T KOG2003|consen 442 LKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNND 520 (840)
T ss_pred HHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCc
Confidence 66666544433222211 1222 224455555444443321 1122222222223344677777777777776554
Q ss_pred CCCchhHHHHHHHHhHhcCCHHHHHHHHccCC---CCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHH
Q 007329 430 LISYIIIANTLIDMYSKCKCIDKALEVFHQIP---DKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSIL 506 (608)
Q Consensus 430 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll 506 (608)
-......||. .-.+.+.|++++|++.|-++. ..++.....+...|-...+...|++++.....-++.|+..+.-|.
T Consensus 521 asc~ealfni-glt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~ 599 (840)
T KOG2003|consen 521 ASCTEALFNI-GLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLA 599 (840)
T ss_pred hHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHH
Confidence 3333333332 223556777788777776654 345555556666777777777888887777655666777777788
Q ss_pred HHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc---CCCHHHHHHHHHHHH-hcCCHHH
Q 007329 507 SACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN---ERDVSAWNILLTGYA-ERGQGAL 582 (608)
Q Consensus 507 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~l~~~~~-~~g~~~~ 582 (608)
..|-+.|+-.+|.+.+-.--+. +.-+..+...|..-|....-+++|+.+|++. +|+.+-|..++..|. +.|+++.
T Consensus 600 dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqk 678 (840)
T KOG2003|consen 600 DLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQK 678 (840)
T ss_pred HHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHH
Confidence 8888888888777776544333 2235666677777777777888888888776 788888887776554 5688888
Q ss_pred HHHHHHHHHHcCCCCCch
Q 007329 583 AEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 583 A~~~~~~m~~~g~~p~~~ 600 (608)
|.++++...+. .|.++
T Consensus 679 a~d~yk~~hrk--fpedl 694 (840)
T KOG2003|consen 679 AFDLYKDIHRK--FPEDL 694 (840)
T ss_pred HHHHHHHHHHh--Cccch
Confidence 88888888775 66666
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.73 E-value=3.8e-12 Score=122.17 Aligned_cols=499 Identities=12% Similarity=0.055 Sum_probs=374.9
Q ss_pred HHHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhhcCChhhHHHHHcccCC
Q 007329 79 ALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFGDLGHAWYVFGKMCD 158 (608)
Q Consensus 79 A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 158 (608)
=.+++++.++ .++.++..|...+. ..+.+.|+.++....+.-+. +. -|.-+|++..-++.|..++++..+
T Consensus 365 K~RVlRKALe-~iP~sv~LWKaAVe----lE~~~darilL~rAveccp~-s~----dLwlAlarLetYenAkkvLNkaRe 434 (913)
T KOG0495|consen 365 KKRVLRKALE-HIPRSVRLWKAAVE----LEEPEDARILLERAVECCPQ-SM----DLWLALARLETYENAKKVLNKARE 434 (913)
T ss_pred HHHHHHHHHH-hCCchHHHHHHHHh----ccChHHHHHHHHHHHHhccc-hH----HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445666555 22223334433332 33455577777666655432 22 344456777888889888887744
Q ss_pred ---CCcchHHHHHHHHHhcCChhHHHHHHHHHHh---cCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCc-
Q 007329 159 ---RDLFSWNVLIGGYAKAGFFDEALSLYQRMFW---VGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEAD- 231 (608)
Q Consensus 159 ---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~- 231 (608)
.+...|-+-...=-.+|+.+...+++.+-.. .+|+..+...|..=...|-..|.+-.+..+....+..|++..
T Consensus 435 ~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed 514 (913)
T KOG0495|consen 435 IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEED 514 (913)
T ss_pred hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccch
Confidence 5667777666666678888888888776432 234888888888888889889999999999999998887543
Q ss_pred -hhHHHHHHHHHHhcCCHHHHHHHHccCCCC---CHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHH
Q 007329 232 -VDVVNALITMYVKCGDLVRARLVFDGMPKR---DRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISA 307 (608)
Q Consensus 232 -~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 307 (608)
..+|+.-...|.+.+.++-|..+|....+- +...|...+..--..|..+.-..+|++.... ++-....|......
T Consensus 515 ~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake 593 (913)
T KOG0495|consen 515 RKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKE 593 (913)
T ss_pred hHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHH
Confidence 568888888999999999999998877653 5667777777777788899999999988875 22334444444556
Q ss_pred HhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCC--CChhhHHHHHHHHHcCCCchHHHH
Q 007329 308 SELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMES--KDVVSWTTMISCYEGSVLPDKAVE 385 (608)
Q Consensus 308 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~ 385 (608)
.-..|+...|..++.++.+.. +.+..+|-.-+.......+++.|..+|.+... +....|.--+...--.+..++|++
T Consensus 594 ~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 594 KWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred HHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHH
Confidence 667799999999999988775 44777888888999999999999999988765 666677666666667788899999
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC--
Q 007329 386 TYQMMEAEGSMPDE-ITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPD-- 462 (608)
Q Consensus 386 ~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-- 462 (608)
++++..+. -|+- ..|..+.+.+.+.++++.|...|..-.+. ++..+..|-.|...-.+.|.+-.|+.+|++..-
T Consensus 673 llEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN 749 (913)
T KOG0495|consen 673 LLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN 749 (913)
T ss_pred HHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC
Confidence 99888875 4554 45677777888888999888887654432 355677888888888899999999999998763
Q ss_pred -CCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHH
Q 007329 463 -KNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALL 541 (608)
Q Consensus 463 -~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 541 (608)
.|...|-..|..-.+.|+.+.|..+..+.++..+.+...|.--|....+.++-......++ + .+-|+.+.-.+.
T Consensus 750 Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALk---k--ce~dphVllaia 824 (913)
T KOG0495|consen 750 PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALK---K--CEHDPHVLLAIA 824 (913)
T ss_pred CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHH---h--ccCCchhHHHHH
Confidence 3567899999999999999999999999887788888888777777766665443333333 2 234777778888
Q ss_pred HHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc
Q 007329 542 DMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRK 599 (608)
Q Consensus 542 ~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 599 (608)
..|....++++|.+.|.+. +.+..+|.-+...+..+|.-++-.+++.+.... +|.+
T Consensus 825 ~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~h 884 (913)
T KOG0495|consen 825 KLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTH 884 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCC
Confidence 8999999999999999988 445678999999999999988889999988775 5543
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.72 E-value=2.3e-13 Score=135.47 Aligned_cols=526 Identities=15% Similarity=0.091 Sum_probs=352.5
Q ss_pred HHhCCChHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhhcCChhhH
Q 007329 70 LCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFGDLGHA 149 (608)
Q Consensus 70 ~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 149 (608)
+...|+.++|.+++.+.++... .+...|.+|...+-.+|+.+++...+-.+....+. |...|..+.....+.|.++.|
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcccHHHH
Confidence 3445999999999999987543 46788999999999999999998876655555443 558899999999999999999
Q ss_pred HHHHcccCCCCcchHH---HHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcc----hHHHHHHHhcCCCChhhHHHHHHH
Q 007329 150 WYVFGKMCDRDLFSWN---VLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVY----TFPCVLRTCGGVPDLKRGKEVHVH 222 (608)
Q Consensus 150 ~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~ 222 (608)
.-.|.+..+.++.-|- --+..|-+.|+...|.+.|.++.+..+ +.|.. .-..+++.+...++-+.|.+.++.
T Consensus 227 ~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p-~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 227 RYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP-PVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC-chhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999998664444443 335678889999999999999987641 22222 233345667777777889988888
Q ss_pred HHHh-CCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCC----CC----------------------HhHHH----HHHH
Q 007329 223 VIRF-GYEADVDVVNALITMYVKCGDLVRARLVFDGMPK----RD----------------------RISWN----AMIS 271 (608)
Q Consensus 223 ~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~----------------------~~~~~----~li~ 271 (608)
.... +-..+...++.++..|.+...++.|......+.. +| ...|+ -+.-
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~i 385 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMI 385 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhh
Confidence 7763 2345567788899999999999999887765543 11 11111 1223
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCC--CChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCh
Q 007329 272 GYFENGEYMKGLMLFIMMREVLVD--PDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNR 349 (608)
Q Consensus 272 ~~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 349 (608)
++......+....+.....+..+. -+...|.-+..++...|++..|..++..+......-+..+|-.+..+|...|..
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 344444455555555555665533 345678889999999999999999999998876666778999999999999999
Q ss_pred HHHHHHHhhCCC--C-ChhhHHHHHHHHHcCCCchHHHHHHHHHHH--------CCCCCCHHHHHHHHHHHHccCChHHH
Q 007329 350 EEGEKVFSRMES--K-DVVSWTTMISCYEGSVLPDKAVETYQMMEA--------EGSMPDEITIASVLSACACLGNLDLG 418 (608)
Q Consensus 350 ~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--------~g~~p~~~t~~~ll~~~~~~~~~~~a 418 (608)
+.|...|+.+.. | +...--.|...+.+.|+.++|.+.++.+.. .+..|+..........+...|+.++-
T Consensus 466 e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~f 545 (895)
T KOG2076|consen 466 EEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEF 545 (895)
T ss_pred HHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHH
Confidence 999999999876 3 233344455678899999999999998642 33556666666677778888988876
Q ss_pred HHHHHHHHHhCC-----CC-----------------chhHHHHHHHHhHhcCCHHHHHHHHccCC--------CCCc---
Q 007329 419 IKLHQLAMRTGL-----IS-----------------YIIIANTLIDMYSKCKCIDKALEVFHQIP--------DKNV--- 465 (608)
Q Consensus 419 ~~~~~~~~~~~~-----~~-----------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~--------~~~~--- 465 (608)
..+...|+.... -| .......++.+-.+.++......-...-. .-.+
T Consensus 546 i~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddw 625 (895)
T KOG2076|consen 546 INTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDW 625 (895)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHH
Confidence 666666654221 11 11111222223333333222222211110 0111
Q ss_pred -ccHHHHHHHHHhCCCchHHHHHHHHhH--hCCCCCHH----HHHHHHHHHhccCcHHHHHHHHHHHHHh-CCCCC---c
Q 007329 466 -ISWTSIILGLRLNNRSFEALIFFRKMM--LNLKPNSV----TLVSILSACARIGALMCGKEIHAHALRI-GVAFD---G 534 (608)
Q Consensus 466 -~~~~~l~~~~~~~~~~~~A~~~~~~m~--~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~p~---~ 534 (608)
..+.-++.++++.+++++|+.+...+. .-+.-+.. .-...+.++...+++..|...++.+... +...+ .
T Consensus 626 fel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~ 705 (895)
T KOG2076|consen 626 FELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQL 705 (895)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 123456778999999999999999888 22222332 2345567778899999999999988743 22222 3
Q ss_pred cHHHHHHHHhHhcCCHHHHHHHHHhc---CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 535 FLPNALLDMYVRCGRMKPAWNQFNSN---ERD--VSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
..|+...+.+.+.|+-.-=...+... .++ +..+.....-....+.+.-|+..+-+.... .||..
T Consensus 706 ~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~--~pd~P 774 (895)
T KOG2076|consen 706 NLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQ--NPDSP 774 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHh--CCCCc
Confidence 45555555566666544444444444 222 233333333455677888888887777664 77744
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.71 E-value=3.4e-11 Score=115.82 Aligned_cols=419 Identities=10% Similarity=0.041 Sum_probs=342.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHH----HHhCCCCchhHHHHHHHHHH
Q 007329 168 IGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHV----IRFGYEADVDVVNALITMYV 243 (608)
Q Consensus 168 i~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~li~~~~ 243 (608)
.-++++..-++.|..+++..++. ++-+...|.+....--..|+.+...+++++- ...|+..+...|..=...+-
T Consensus 413 wlAlarLetYenAkkvLNkaRe~--iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e 490 (913)
T KOG0495|consen 413 WLALARLETYENAKKVLNKAREI--IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACE 490 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHh
Confidence 34566777788899999988864 6778888888777777888888888887654 35688888888887777787
Q ss_pred hcCCHHHHHHHHccCCCC------CHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhH
Q 007329 244 KCGDLVRARLVFDGMPKR------DRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLG 317 (608)
Q Consensus 244 ~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 317 (608)
+.|..-.+..+......- --.+|+.-...|.+.+.++-|..+|....+. .+-+...|......--..|..+..
T Consensus 491 ~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl 569 (913)
T KOG0495|consen 491 DAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESL 569 (913)
T ss_pred hcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHH
Confidence 888777777766655431 3458888899999999999999999988874 233455666666666677899999
Q ss_pred HHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCC
Q 007329 318 REVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMES---KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEG 394 (608)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 394 (608)
..+++.++..- +.....|-.....+...|++..|..++...-+ .+...|-.-+.....+.+++.|..+|.+....
T Consensus 570 ~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~- 647 (913)
T KOG0495|consen 570 EALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI- 647 (913)
T ss_pred HHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc-
Confidence 99999998773 44556666777888889999999999988765 35567888888899999999999999998875
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC--CC-cccHHHH
Q 007329 395 SMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPD--KN-VISWTSI 471 (608)
Q Consensus 395 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l 471 (608)
.|+...|.--+..---.++.++|.+++++..+.- +.-...|..+...+-+.++++.|.+.|..-.+ |+ +..|-.+
T Consensus 648 -sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllL 725 (913)
T KOG0495|consen 648 -SGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLL 725 (913)
T ss_pred -CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHH
Confidence 5666666666666666789999999999888753 44467888999999999999999999987764 43 4567777
Q ss_pred HHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHH
Q 007329 472 ILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMK 551 (608)
Q Consensus 472 ~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 551 (608)
...--+.|+.-.|..++++..-..+-|...|...++.-.+.|+.+.|..+..++++.-+. +...|..-|....+.++-.
T Consensus 726 akleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~-sg~LWaEaI~le~~~~rkT 804 (913)
T KOG0495|consen 726 AKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPS-SGLLWAEAIWLEPRPQRKT 804 (913)
T ss_pred HHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cchhHHHHHHhccCcccch
Confidence 777888899999999999998667778899999999999999999999999998876544 7788888999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 007329 552 PAWNQFNSNERDVSAWNILLTGYAERGQGALAEEFFRKMIDSK 594 (608)
Q Consensus 552 ~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 594 (608)
...+.+++.+.|+...-++...+....+++.|.++|++....+
T Consensus 805 ks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d 847 (913)
T KOG0495|consen 805 KSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD 847 (913)
T ss_pred HHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999998763
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.68 E-value=3.9e-12 Score=126.92 Aligned_cols=532 Identities=13% Similarity=0.060 Sum_probs=348.9
Q ss_pred CCCCCcchHHHHHHHHhCCChHHHHHHHHHHhhcCCCC-ChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHh
Q 007329 56 SSIATKNPNSRLNELCLNGSLEQALKYLDSMQELNICV-DEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGN 134 (608)
Q Consensus 56 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 134 (608)
.|.....|..|-..|-.+|+.++++..+--+- ...| |...|..+.......|+++.|.-+|..+++..+.. ....-
T Consensus 169 dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAA--HL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n-~~~~~ 245 (895)
T KOG2076|consen 169 DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAA--HLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSN-WELIY 245 (895)
T ss_pred CccchhhHHHHHHHHHHcccHHHHHHHHHHHH--hcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcc-hHHHH
Confidence 35556669999999999999999988665443 3434 56777777888889999999999999999998764 44444
Q ss_pred HHHHHhhhcCChhhHHHHHcccCCCCc----chH----HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHH
Q 007329 135 AFLSMFVKFGDLGHAWYVFGKMCDRDL----FSW----NVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRT 206 (608)
Q Consensus 135 ~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~----~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~ 206 (608)
.-...|-+.|+...|..-|.++.+-++ .-. -..+..+...++-+.|++.++.....++-..+...+++++..
T Consensus 246 ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael 325 (895)
T KOG2076|consen 246 ERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAEL 325 (895)
T ss_pred HHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHH
Confidence 456788899999999999988844222 112 234556777788899999999988755456778889999999
Q ss_pred hcCCCChhhHHHHHHHHHHhC---------------------------CCCchhHHHHHHHHHH--hcCCHHHHHHHHcc
Q 007329 207 CGGVPDLKRGKEVHVHVIRFG---------------------------YEADVDVVNALITMYV--KCGDLVRARLVFDG 257 (608)
Q Consensus 207 ~~~~~~~~~a~~~~~~~~~~g---------------------------~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~ 257 (608)
+.+...++.+......+.... +.++..+. .++-++. +.+...+++.-|-.
T Consensus 326 ~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~ 404 (895)
T KOG2076|consen 326 FLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLV 404 (895)
T ss_pred HHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHH
Confidence 999999999999888877622 22233331 1222223 33444444433322
Q ss_pred CC----CCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCc
Q 007329 258 MP----KRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDV 333 (608)
Q Consensus 258 ~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 333 (608)
.. ..++..|.-+..+|...|++.+|+++|..+......-+...|..+..++...|..+.|.+.|+.++... +.+.
T Consensus 405 ~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~ 483 (895)
T KOG2076|consen 405 EDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNL 483 (895)
T ss_pred HhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCch
Confidence 21 226678899999999999999999999999987666678889999999999999999999999998874 4556
Q ss_pred ccchHHHHHHHhcCChHHHHHHHhhCCCCChh------------hHHHHHHHHHcCCCchHHHHHHHHHHHCC-----CC
Q 007329 334 SVCNPLIKMYLSFGNREEGEKVFSRMESKDVV------------SWTTMISCYEGSVLPDKAVETYQMMEAEG-----SM 396 (608)
Q Consensus 334 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------------~~~~li~~~~~~~~~~~a~~~~~~m~~~g-----~~ 396 (608)
.+--.|...+.+.|+.++|.+.+..+..||.. ..-.....+.+.|+.++=+.+...|...+ +-
T Consensus 484 D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f 563 (895)
T KOG2076|consen 484 DARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIF 563 (895)
T ss_pred hhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 66677888999999999999999998776522 12223446778899888777777776642 11
Q ss_pred CC-----------------HHHHHHHHHHHHccCChHHHHHHHHH------HHHhCCCCch--hHHHHHHHHhHhcCCHH
Q 007329 397 PD-----------------EITIASVLSACACLGNLDLGIKLHQL------AMRTGLISYI--IIANTLIDMYSKCKCID 451 (608)
Q Consensus 397 p~-----------------~~t~~~ll~~~~~~~~~~~a~~~~~~------~~~~~~~~~~--~~~~~li~~~~~~g~~~ 451 (608)
|+ ..+...++.+-.+.++......-... ....|+..+. ..+.-++..+++.++.+
T Consensus 564 ~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~q 643 (895)
T KOG2076|consen 564 PRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQ 643 (895)
T ss_pred chHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHH
Confidence 21 11122233333333332222221111 1112222222 34566778889999999
Q ss_pred HHHHHHccCCCCCc---------ccHHHHHHHHHhCCCchHHHHHHHHhHhC--C--CCCH-HHHHHHHHHHhc------
Q 007329 452 KALEVFHQIPDKNV---------ISWTSIILGLRLNNRSFEALIFFRKMMLN--L--KPNS-VTLVSILSACAR------ 511 (608)
Q Consensus 452 ~A~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~--~--~p~~-~~~~~ll~~~~~------ 511 (608)
+|+.+...+...+. ..-...+.+.+..+++..|...++.|... . .|.. ..|+..++.+.+
T Consensus 644 eAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~ 723 (895)
T KOG2076|consen 644 EALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVC 723 (895)
T ss_pred HHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888774222 12344567778899999999999999822 1 2221 223322222222
Q ss_pred -----------------------------cCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHh----------cCCHHH
Q 007329 512 -----------------------------IGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVR----------CGRMKP 552 (608)
Q Consensus 512 -----------------------------~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----------~g~~~~ 552 (608)
.+.+..|++.+-++....+. ++.+--+|+-+|.. .-.+-.
T Consensus 724 ~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd-~Pl~nl~lglafih~a~qr~v~~Rh~~i~q 802 (895)
T KOG2076|consen 724 YLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPD-SPLINLCLGLAFIHLALQRRVSNRHAQIAQ 802 (895)
T ss_pred HHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCC-CcHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 23344455544444433322 12222222222211 011222
Q ss_pred HHHHHHhc----CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 553 AWNQFNSN----ER--DVSAWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 553 A~~~~~~~----~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
+..++++- .+ -..++..+.++|-..|-+.-|..++++.++.
T Consensus 803 G~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~ 849 (895)
T KOG2076|consen 803 GFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEV 849 (895)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCC
Confidence 33333222 22 3456778889999999999999999999864
No 34
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.68 E-value=1.7e-13 Score=135.58 Aligned_cols=492 Identities=11% Similarity=-0.011 Sum_probs=264.3
Q ss_pred HHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhhcCChhhHHHHHcccCCCC
Q 007329 81 KYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFGDLGHAWYVFGKMCDRD 160 (608)
Q Consensus 81 ~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 160 (608)
.++-.+...|+.|+..+|.++|.-|+..|+.+.|- +|.-|.-.....+...++.++.+....++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 34556667788888888888888888888888887 7887777777777777888888877777777665 677
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHH-HH---h----cC----------------CCCCCcchHHHHHHHhcCCCChhhH
Q 007329 161 LFSWNVLIGGYAKAGFFDEALSLYQR-MF---W----VG----------------GVKPDVYTFPCVLRTCGGVPDLKRG 216 (608)
Q Consensus 161 ~~~~~~li~~~~~~g~~~~a~~~~~~-m~---~----~~----------------~~~p~~~~~~~ll~~~~~~~~~~~a 216 (608)
..+|..|..+|.+.|+... ++..++ |. . .| +.-||..+ ++....-.|-++.+
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~eglwaql 158 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVLEGLWAQL 158 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHHHHHHHHH
Confidence 7788888888888887654 222222 21 1 11 11111111 11112222333333
Q ss_pred HHHHHHHHHhCC-CCchhHHHHHHHHHHhc-CCHHHHHHHHccCCC-CCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 007329 217 KEVHVHVIRFGY-EADVDVVNALITMYVKC-GDLVRARLVFDGMPK-RDRISWNAMISGYFENGEYMKGLMLFIMMREVL 293 (608)
Q Consensus 217 ~~~~~~~~~~g~-~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 293 (608)
.+++..+-.... .|..+ .++-.... ..+++-........+ +++.+|.+++.+-..+|+.+.|..++.+|++.|
T Consensus 159 lkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~g 234 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKG 234 (1088)
T ss_pred HHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcC
Confidence 333322211100 01111 12222222 234444444444444 689999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHH
Q 007329 294 VDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVVSWTTMISC 373 (608)
Q Consensus 294 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~ 373 (608)
++.+..-|..++-+ .++...+..++.-|.+.|+.|+..|+...+..+...|....+.+..+.-.--....+..+.++
T Consensus 235 fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg 311 (1088)
T KOG4318|consen 235 FPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRG 311 (1088)
T ss_pred CCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcc
Confidence 99999988888866 888889999999999999999999999888777775553222221111000111122222222
Q ss_pred HHcCCCc-----hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCC--C-CchhHHHHHHHHhH
Q 007329 374 YEGSVLP-----DKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGL--I-SYIIIANTLIDMYS 445 (608)
Q Consensus 374 ~~~~~~~-----~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~-~~~~~~~~li~~~~ 445 (608)
.....+. .-....+.+..-.|+.-....|.. ..-...+|.-+..+++...+..... . .++..|..++.-|.
T Consensus 312 ~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~-c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyF 390 (1088)
T KOG4318|consen 312 LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSM-CEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYF 390 (1088)
T ss_pred cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHH-HHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHH
Confidence 1111111 111122222222343333333322 2223335666666665554442111 1 12223333333332
Q ss_pred hc----------------------CCHHHHHHHHccCCCCCc-----------------cc-----------HHHHHHHH
Q 007329 446 KC----------------------KCIDKALEVFHQIPDKNV-----------------IS-----------WTSIILGL 475 (608)
Q Consensus 446 ~~----------------------g~~~~A~~~~~~~~~~~~-----------------~~-----------~~~l~~~~ 475 (608)
+. ....+..++..... ||. .. -+.++..+
T Consensus 391 rr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lr-kns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l 469 (1088)
T KOG4318|consen 391 RRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLR-KNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTL 469 (1088)
T ss_pred HHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhC-cchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHH
Confidence 21 11122222222221 111 01 11223333
Q ss_pred HhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH--hCCCCCccHHHHHHHHhHhcCCHHHH
Q 007329 476 RLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALR--IGVAFDGFLPNALLDMYVRCGRMKPA 553 (608)
Q Consensus 476 ~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~p~~~~~~~l~~~~~~~g~~~~A 553 (608)
+..-+..+++..-+......-+ ..|..|+.-+...+..+.|..+.++... ..+..|..-+..+.+.+.+.+...++
T Consensus 470 ~se~n~lK~l~~~ekye~~lf~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl 547 (1088)
T KOG4318|consen 470 NSEYNKLKILCDEEKYEDLLFA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDL 547 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHH
Confidence 3333333333322222211111 4566666666666666666666665542 23344555566666666666776667
Q ss_pred HHHHHhc------CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 007329 554 WNQFNSN------ERD-VSAWNILLTGYAERGQGALAEEFFRKMIDSKG 595 (608)
Q Consensus 554 ~~~~~~~------~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 595 (608)
..+++++ .|+ ..++-.+.++....|+.+...++++-+...|+
T Consensus 548 ~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl 596 (1088)
T KOG4318|consen 548 STILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGL 596 (1088)
T ss_pred HHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhh
Confidence 6666666 111 23444555566666666666666666666554
No 35
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=4.2e-12 Score=117.87 Aligned_cols=401 Identities=12% Similarity=0.004 Sum_probs=262.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC-cchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 007329 164 WNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPD-VYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMY 242 (608)
Q Consensus 164 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 242 (608)
+-...+-|.++|++++|+++|.+..+ +.|| +..|.....+|...|+|+++.+--...++.. +..+..+..-..++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~---l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIE---LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN-PDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHh---cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-cHHHHHHHHHHHHH
Confidence 44556678889999999999999886 4577 7778888888899999998888777776653 22345666777788
Q ss_pred HhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCChhHHHHHHHH---------HHHC--CCCCChhHHHHHHHHHhhc
Q 007329 243 VKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIM---------MREV--LVDPDFMTLSSVISASELV 311 (608)
Q Consensus 243 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~---------m~~~--~~~p~~~~~~~ll~~~~~~ 311 (608)
-..|++++|+.= ++-.++..++....-.--+.+++++ |.+. .+.|+.....+....+...
T Consensus 194 E~lg~~~eal~D---------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~ 264 (606)
T KOG0547|consen 194 EQLGKFDEALFD---------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD 264 (606)
T ss_pred HhhccHHHHHHh---------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc
Confidence 888888887642 2233333333333333333333332 1111 2334444444443332211
Q ss_pred CChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhc--C---ChHHHHHHHhhCC-------CC---Ch------hhHHHH
Q 007329 312 GDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSF--G---NREEGEKVFSRME-------SK---DV------VSWTTM 370 (608)
Q Consensus 312 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~---~~~~a~~~~~~~~-------~~---~~------~~~~~l 370 (608)
- ......+.......+..++... + .+..|...+.+-. .. |. .+....
T Consensus 265 ~------------~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~ 332 (606)
T KOG0547|consen 265 P------------KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLR 332 (606)
T ss_pred c------------cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHh
Confidence 0 0000000111111111111110 1 1222222222211 01 11 111111
Q ss_pred HHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCH
Q 007329 371 ISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCI 450 (608)
Q Consensus 371 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 450 (608)
..-+.-.|+.-.|...|+..+.....++.. |..+...|....+.++....|....+.+ +-++.+|..-..++.-.+++
T Consensus 333 gtF~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~ 410 (606)
T KOG0547|consen 333 GTFHFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQY 410 (606)
T ss_pred hhhhhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHH
Confidence 112445788899999999999876554432 7777788999999999999999998877 55667777777777788999
Q ss_pred HHHHHHHccCCCC---CcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 007329 451 DKALEVFHQIPDK---NVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALR 527 (608)
Q Consensus 451 ~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 527 (608)
++|..-|++..+- ++..|--+.-+..+.++++++...|++....++.-+..|+.....+...++++.|.+.|+.+++
T Consensus 411 e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 411 EEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 9999999988754 3455666666667888999999999999988888899999999999999999999999999987
Q ss_pred hCCCCC-------ccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007329 528 IGVAFD-------GFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKMID 592 (608)
Q Consensus 528 ~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 592 (608)
....-+ +.+.-.++-.-. .+++..|.+++.++ +.....|..|...-...|+.++|+++|++...
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 654422 222222332223 38999999999998 33456899999999999999999999998753
No 36
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.61 E-value=1e-12 Score=120.61 Aligned_cols=442 Identities=13% Similarity=0.136 Sum_probs=247.8
Q ss_pred hHHHHHHHHhCCChHHHHHHHHHHhhcCCCCChhhHHHHH-HHhhccCCchhhhHHHHHHHHhcCCcchh----HHhHHH
Q 007329 63 PNSRLNELCLNGSLEQALKYLDSMQELNICVDEDALVNLV-RLCEWKRGYDEGLYLHSVVSKTMSHLSVR----LGNAFL 137 (608)
Q Consensus 63 ~~~ll~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~ 137 (608)
+..+...|..+....+|+..|+-+.+....|+...+..-+ ..+.+.+.+.+|++.++..+..-+..+.. ..+.+.
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig 283 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence 4566778888999999999999999988889887765544 58889999999999999988877655433 445555
Q ss_pred HHhhhcCChhhHHHHHcccCC--CCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-----------CCCcchHHHHH
Q 007329 138 SMFVKFGDLGHAWYVFGKMCD--RDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGV-----------KPDVYTFPCVL 204 (608)
Q Consensus 138 ~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-----------~p~~~~~~~ll 204 (608)
-.+.+.|.++.|+.-|+...+ |+..+--.|+-++.--|+.++..+.|.+|..-.|. .|+....+..|
T Consensus 284 vtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai 363 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAI 363 (840)
T ss_pred eeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHH
Confidence 678899999999999998844 67655444444555578899999999998764321 12222222222
Q ss_pred H-----HhcCCC--ChhhHHHHHHHHHHhCCCCchhH-------------HH--------HHHHHHHhcCCHHHHHHHHc
Q 007329 205 R-----TCGGVP--DLKRGKEVHVHVIRFGYEADVDV-------------VN--------ALITMYVKCGDLVRARLVFD 256 (608)
Q Consensus 205 ~-----~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~-------------~~--------~li~~~~~~g~~~~A~~~~~ 256 (608)
. -.-+.+ +.+++.-.-..++.--+.|+-.. +. .-..-|.+.|+++.|.+++.
T Consensus 364 ~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilk 443 (840)
T KOG2003|consen 364 KNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILK 443 (840)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHH
Confidence 1 111111 11122211122222112222110 00 01123445566666666655
Q ss_pred cCCCCCHhHHHHHHH-----HHHh-cCChhHHHHHHHHHHHCCCCCChhHHHHHH-----HHHhhcCChhhHHHHHHHHH
Q 007329 257 GMPKRDRISWNAMIS-----GYFE-NGEYMKGLMLFIMMREVLVDPDFMTLSSVI-----SASELVGDEKLGREVHGYVI 325 (608)
Q Consensus 257 ~~~~~~~~~~~~li~-----~~~~-~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll-----~~~~~~~~~~~a~~~~~~~~ 325 (608)
-+.++|..+-.+... -|.+ ..++.+|...-+..+. ..-|+... ......|++++|.+.|++.+
T Consensus 444 v~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln------~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal 517 (840)
T KOG2003|consen 444 VFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALN------IDRYNAAALTNKGNIAFANGDLDKAAEFYKEAL 517 (840)
T ss_pred HHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhc------ccccCHHHhhcCCceeeecCcHHHHHHHHHHHH
Confidence 555443332222111 1111 1233334333332221 11122111 11223456666666666665
Q ss_pred HhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHH
Q 007329 326 KMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMES---KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITI 402 (608)
Q Consensus 326 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~ 402 (608)
..........|| +.-.+-..|++++|++.|-++.. .+......+...|-...+..+|++++.+.... ++.|+..+
T Consensus 518 ~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~il 595 (840)
T KOG2003|consen 518 NNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAIL 595 (840)
T ss_pred cCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHH
Confidence 443222222332 22234555666666666655543 44445555555666666666666666444332 33345556
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCC--CCCcccHHHHHHHH-HhCC
Q 007329 403 ASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIP--DKNVISWTSIILGL-RLNN 479 (608)
Q Consensus 403 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~-~~~~ 479 (608)
.-|...|-+.|+-..|.+.+-+-.+. ++.+..+...|...|....-+++++..|++.. +|+..-|..|+..| .+.|
T Consensus 596 skl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsg 674 (840)
T KOG2003|consen 596 SKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSG 674 (840)
T ss_pred HHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcc
Confidence 66666666666666666655433322 35556666666666666666666666666543 56666666665443 3456
Q ss_pred CchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccC
Q 007329 480 RSFEALIFFRKMMLNLKPNSVTLVSILSACARIG 513 (608)
Q Consensus 480 ~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~ 513 (608)
++.+|+++|+...+.++.|...+..|++.|...|
T Consensus 675 nyqka~d~yk~~hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 675 NYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred cHHHHHHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence 6666666666666666666666666666665554
No 37
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.58 E-value=5.6e-12 Score=124.11 Aligned_cols=215 Identities=8% Similarity=-0.062 Sum_probs=143.9
Q ss_pred HHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchh-------HHHHHHHHhH
Q 007329 373 CYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYII-------IANTLIDMYS 445 (608)
Q Consensus 373 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~li~~~~ 445 (608)
.+...|++++|...++++.+.. +-+...+..+...|.+.|+++.+.+++..+.+.+..++.. .|..++....
T Consensus 162 l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~ 240 (398)
T PRK10747 162 IQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAM 240 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555544443 1123344444455555555555555555555443322111 1222232233
Q ss_pred hcCCHHHHHHHHccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 007329 446 KCKCIDKALEVFHQIPD---KNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIH 522 (608)
Q Consensus 446 ~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 522 (608)
...+.+...++++...+ .++.....+...+...|+.++|.+.+++... .+|+... .++.+....++.+++.+..
T Consensus 241 ~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-~~~~~~l--~~l~~~l~~~~~~~al~~~ 317 (398)
T PRK10747 241 ADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK-RQYDERL--VLLIPRLKTNNPEQLEKVL 317 (398)
T ss_pred HhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCHHH--HHHHhhccCCChHHHHHHH
Confidence 34455666666666652 4666777788888889999999999988874 5566532 2344445668999999999
Q ss_pred HHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007329 523 AHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN---ERDVSAWNILLTGYAERGQGALAEEFFRKMID 592 (608)
Q Consensus 523 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 592 (608)
+...+..+. |+..+.++...+.+.|++++|.+.|+++ .|+...+..+...+.+.|+.++|.+++++-..
T Consensus 318 e~~lk~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 318 RQQIKQHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 988887665 7777888999999999999999999998 89999999999999999999999999998765
No 38
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.57 E-value=2.2e-12 Score=127.00 Aligned_cols=279 Identities=10% Similarity=0.040 Sum_probs=164.9
Q ss_pred cCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccch--HHHHHHHhcCChHHHH
Q 007329 276 NGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCN--PLIKMYLSFGNREEGE 353 (608)
Q Consensus 276 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~ 353 (608)
.|++++|.+.+....+..-.| ...|.....+..+.|+++.+.+.+.++.+. .|+...+. .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 455555555554433321111 111222233335566666666666665543 33333222 2245566666666666
Q ss_pred HHHhhCCC---CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHccCChHHHHHHHH
Q 007329 354 KVFSRMES---KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDE-------ITIASVLSACACLGNLDLGIKLHQ 423 (608)
Q Consensus 354 ~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-------~t~~~ll~~~~~~~~~~~a~~~~~ 423 (608)
..++++.+ .+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 66666654 24455566666677777777777777777766544222 122233333333344444455554
Q ss_pred HHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHH
Q 007329 424 LAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLV 503 (608)
Q Consensus 424 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~ 503 (608)
.+-+. .+.++.....+...+...|+.++|.+++++..+.....--.++.+.+..++.+++++..+...+..+-|...+.
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l 332 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWS 332 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHH
Confidence 44322 24456666777777777788888777777665433222233444555567778888888777755666666777
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 504 SILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 504 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
.+...|.+.+++++|.+.|+.+.+. .|+...+..|..++.+.|+.++|.+++++.
T Consensus 333 ~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 333 TLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888888888888888887764 466667777888888888888888877654
No 39
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.56 E-value=1.9e-14 Score=135.42 Aligned_cols=250 Identities=16% Similarity=0.141 Sum_probs=105.5
Q ss_pred HHHHHHHhcCChHHHHHHHhhC-CC----CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 007329 338 PLIKMYLSFGNREEGEKVFSRM-ES----KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACL 412 (608)
Q Consensus 338 ~l~~~~~~~~~~~~a~~~~~~~-~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 412 (608)
.+...+.+.|++++|.+++++. .. .|...|..+.......++++.|...++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 3456666777777777777432 22 23444555555566677777777777777765433 44455555555 577
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCC-----CCCcccHHHHHHHHHhCCCchHHHHH
Q 007329 413 GNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIP-----DKNVISWTSIILGLRLNNRSFEALIF 487 (608)
Q Consensus 413 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~ 487 (608)
+++++|.+++....+.. ++...+..++..+.+.++++++.++++.+. ..+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77888877776655432 345556667777778888888888777743 24556777788888899999999999
Q ss_pred HHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCC
Q 007329 488 FRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERD 563 (608)
Q Consensus 488 ~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~ 563 (608)
+++.++..+.|......++..+...|+.+++.++++...+.. ..|+..+..+..+|...|+.++|...+++. +.|
T Consensus 169 ~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 169 YRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp HHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 999985555568888899999999999999999999888765 447788889999999999999999999998 457
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007329 564 VSAWNILLTGYAERGQGALAEEFFRKMID 592 (608)
Q Consensus 564 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 592 (608)
+.....+..++...|+.++|.++.++..+
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 88889999999999999999999887754
No 40
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.56 E-value=1e-11 Score=123.09 Aligned_cols=220 Identities=11% Similarity=0.025 Sum_probs=136.1
Q ss_pred HHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHH-------HHHHHH
Q 007329 371 ISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIA-------NTLIDM 443 (608)
Q Consensus 371 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~li~~ 443 (608)
...+...|+++.|...++.+.+... -+...+..+...+...|+++.+.+++..+.+.+..+..... ..++..
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~P-~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~ 238 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMAP-RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDE 238 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555431 13334445555555555555555555555554432222111 111111
Q ss_pred hHhcCCHHHHHHHHccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHH--HHHHHHHhccCcHHHH
Q 007329 444 YSKCKCIDKALEVFHQIPD---KNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTL--VSILSACARIGALMCG 518 (608)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~--~~ll~~~~~~~~~~~a 518 (608)
-......+...+.++...+ .++..+..+...+...|+.++|.+.+++.....+.+.... ..........++.+.+
T Consensus 239 ~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~ 318 (409)
T TIGR00540 239 AMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKL 318 (409)
T ss_pred HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHH
Confidence 1112223444455555543 3667777788888888888888888888883333333211 1122222345777888
Q ss_pred HHHHHHHHHhCCCCCc--cHHHHHHHHhHhcCCHHHHHHHHHh--c---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007329 519 KEIHAHALRIGVAFDG--FLPNALLDMYVRCGRMKPAWNQFNS--N---ERDVSAWNILLTGYAERGQGALAEEFFRKMI 591 (608)
Q Consensus 519 ~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~--~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 591 (608)
.+.++...+..+. |+ ....+++..+.+.|++++|.+.|+. . .|+...+.++...+.+.|+.++|.+++++..
T Consensus 319 ~~~~e~~lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 319 EKLIEKQAKNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8888888776554 55 6777899999999999999999994 3 7888888899999999999999999999865
Q ss_pred H
Q 007329 592 D 592 (608)
Q Consensus 592 ~ 592 (608)
.
T Consensus 398 ~ 398 (409)
T TIGR00540 398 G 398 (409)
T ss_pred H
Confidence 4
No 41
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.55 E-value=3.4e-12 Score=126.39 Aligned_cols=282 Identities=12% Similarity=0.020 Sum_probs=195.7
Q ss_pred hcCChhHHHHHHHHHHHCCCCCChhH-HHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcc--cchHHHHHHHhcCChHH
Q 007329 275 ENGEYMKGLMLFIMMREVLVDPDFMT-LSSVISASELVGDEKLGREVHGYVIKMGFSDDVS--VCNPLIKMYLSFGNREE 351 (608)
Q Consensus 275 ~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~ 351 (608)
..|+++.|.+.+.+..+. .|+... +.....+....|+.+.+.+++....+.. |+.. +.-.....+...|+++.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHH
Confidence 467788888777766554 344333 3344456667788888888888876543 4433 33335777788888888
Q ss_pred HHHHHhhCCC--C-ChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HccCChHHHHHHHHHH
Q 007329 352 GEKVFSRMES--K-DVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSAC---ACLGNLDLGIKLHQLA 425 (608)
Q Consensus 352 a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~---~~~~~~~~a~~~~~~~ 425 (608)
|...++.+.+ | +...+..+...+.+.|++++|.+++..+.+.++.+.......-..++ ...+..+.+.+.+..+
T Consensus 172 Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 172 ARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 8888888776 3 55667778888889999999999999988886543322211111111 2222333333444444
Q ss_pred HHhCC---CCchhHHHHHHHHhHhcCCHHHHHHHHccCCC--CCccc---HHHHHHHHHhCCCchHHHHHHHHhHhCCCC
Q 007329 426 MRTGL---ISYIIIANTLIDMYSKCKCIDKALEVFHQIPD--KNVIS---WTSIILGLRLNNRSFEALIFFRKMMLNLKP 497 (608)
Q Consensus 426 ~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~---~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p 497 (608)
.+... +.+...+..+...+...|+.++|.+++++..+ ||... ...........++.+.+.+.+++..+..+-
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~ 331 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD 331 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC
Confidence 44322 24778888888999999999999999998875 33321 122222334457788888888888755555
Q ss_pred CH--HHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 498 NS--VTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 498 ~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
|. ....++.+.+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55 6777899999999999999999997666666788888889999999999999999999874
No 42
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=7.1e-10 Score=102.91 Aligned_cols=411 Identities=13% Similarity=0.087 Sum_probs=276.1
Q ss_pred hCCChHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhhcCChhhHHH
Q 007329 72 LNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFGDLGHAWY 151 (608)
Q Consensus 72 ~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 151 (608)
.++++..|..+|++.+... ..+...|...+.+-.+...+..|..+++..+..-+..|. .|-..+.+=-..|++..|.+
T Consensus 85 sq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHHHHHHhcccHHHHH
Confidence 3667778888888887644 346667777788888888899999999988887766543 33344444456689999999
Q ss_pred HHcccC--CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHh-CC
Q 007329 152 VFGKMC--DRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRF-GY 228 (608)
Q Consensus 152 ~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~ 228 (608)
+|+.-. +|+..+|++.|+.=.+-+..+.|..++++..- +.|+..+|.--.+.-.+.|.+..+.++++..++. |-
T Consensus 163 iferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~---~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 163 IFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL---VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe---ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence 998874 48999999999998899999999999998874 6799988888888888889999999999887764 21
Q ss_pred -CCchhHHHHHHHHHHhcCCHHHHHHHHccCC----CC-CHhHHHHHHHHHHhcCChhHHHHH--------HHHHHHCCC
Q 007329 229 -EADVDVVNALITMYVKCGDLVRARLVFDGMP----KR-DRISWNAMISGYFENGEYMKGLML--------FIMMREVLV 294 (608)
Q Consensus 229 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~~~~~~a~~~--------~~~m~~~~~ 294 (608)
..+...+.+....=.++..++.|.-+|.-.. +. ....|..+...=-+.|+.....+. ++.++.. -
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~-n 318 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK-N 318 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh-C
Confidence 1123344444444455667777777765433 32 233454444444445554433332 2333333 2
Q ss_pred CCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCc--ccchHHH--------HHHHhcCChHHHHHHHhhCCC--C
Q 007329 295 DPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDV--SVCNPLI--------KMYLSFGNREEGEKVFSRMES--K 362 (608)
Q Consensus 295 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~--------~~~~~~~~~~~a~~~~~~~~~--~ 362 (608)
+-|-.+|--.++.-...|+.+...++|+..+..- +|-. ..|.-.| -.-....+++.+.++|+...+ |
T Consensus 319 p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIP 397 (677)
T KOG1915|consen 319 PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIP 397 (677)
T ss_pred CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcC
Confidence 3456666666776677788888888888887653 4421 1111111 111344677777777766655 2
Q ss_pred -ChhhHHHH----HHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHH
Q 007329 363 -DVVSWTTM----ISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIA 437 (608)
Q Consensus 363 -~~~~~~~l----i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 437 (608)
...|+.-+ ..--.++.+...|.+++.... |.-|-..+|...|..=.+.+++|.+..+++..++.+ +.+..+|
T Consensus 398 HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W 474 (677)
T KOG1915|consen 398 HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAW 474 (677)
T ss_pred cccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHH
Confidence 23333332 333446677778887776655 446777788777777778888888888888877776 5566777
Q ss_pred HHHHHHhHhcCCHHHHHHHHccCCC-CC----cccHHHHHHHHHhCCCchHHHHHHHHhH
Q 007329 438 NTLIDMYSKCKCIDKALEVFHQIPD-KN----VISWTSIILGLRLNNRSFEALIFFRKMM 492 (608)
Q Consensus 438 ~~li~~~~~~g~~~~A~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 492 (608)
......-...|+.+.|..+|+-..+ |. ...|-+.|+--...|.++.|..+|++++
T Consensus 475 ~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL 534 (677)
T KOG1915|consen 475 SKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLL 534 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHH
Confidence 7766666777888888888876553 32 2456666666677788888888888877
No 43
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.53 E-value=4.7e-14 Score=132.69 Aligned_cols=253 Identities=16% Similarity=0.117 Sum_probs=81.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHH-HHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCC
Q 007329 270 ISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVI-SASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGN 348 (608)
Q Consensus 270 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 348 (608)
...+.+.|++++|++++++.......|+...|..++ ..+...++.+.|.+.++.+.+.+ +-+...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccccc
Confidence 334445555555555554333332223333333322 23334555666666666665544 2244455555555 56666
Q ss_pred hHHHHHHHhhCCC--CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 007329 349 REEGEKVFSRMES--KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEG-SMPDEITIASVLSACACLGNLDLGIKLHQLA 425 (608)
Q Consensus 349 ~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 425 (608)
+++|.+++...-+ ++...+..++..+.+.++++++.++++.+.... ...+...|..+...+.+.|+.++|.+.++..
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666666655432 444555566666667777777777777765432 2345556666666677777777777777777
Q ss_pred HHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCC---CCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHH
Q 007329 426 MRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIP---DKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTL 502 (608)
Q Consensus 426 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~ 502 (608)
.+.. +.+......++..+...|+.+++.++++... ..|+..|..+..++...|++++|+..|++.....+.|..+.
T Consensus 173 l~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~ 251 (280)
T PF13429_consen 173 LELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWL 251 (280)
T ss_dssp HHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHH
T ss_pred HHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccc
Confidence 7665 3455566667777777777776555555443 23455566666666666666666666666654444456666
Q ss_pred HHHHHHHhccCcHHHHHHHHHHH
Q 007329 503 VSILSACARIGALMCGKEIHAHA 525 (608)
Q Consensus 503 ~~ll~~~~~~~~~~~a~~~~~~~ 525 (608)
..+..++...|+.++|.++.+++
T Consensus 252 ~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 252 LAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHT---------------
T ss_pred ccccccccccccccccccccccc
Confidence 66666666666666666665544
No 44
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=8.7e-10 Score=102.34 Aligned_cols=424 Identities=12% Similarity=0.085 Sum_probs=238.7
Q ss_pred ChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhhcCChhhHHHHHcccCC--CCc-chHHHHHHH
Q 007329 94 DEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFGDLGHAWYVFGKMCD--RDL-FSWNVLIGG 170 (608)
Q Consensus 94 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~ 170 (608)
+...|.....--...+++..|..+|+..+.-. ..+...|-..+.+=.++..+..|..+++.... |-+ .-|--.+..
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ym 150 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYM 150 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 44444444444455667777888888777665 34566666667777777778888888877633 222 234444444
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 007329 171 YAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVR 250 (608)
Q Consensus 171 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 250 (608)
=-..|+...|.++|++..+ ..|+...|.+.|+.-.+-+.++.|..+++..+-. .|++..|......=.++|++..
T Consensus 151 EE~LgNi~gaRqiferW~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWME---WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHHhcccHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHH
Confidence 4456788888888877664 5688888888888777777888888888777654 4777777777777777788777
Q ss_pred HHHHHccCCCC------CHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--hhHHHHHHHHHhhcCChhhHHHHHH
Q 007329 251 ARLVFDGMPKR------DRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPD--FMTLSSVISASELVGDEKLGREVHG 322 (608)
Q Consensus 251 A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~ 322 (608)
|..+|+...+. +...+.++..-=.++..++.|.-+|+-..+. ++-+ ...|......=-+-|+.....+..-
T Consensus 226 aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 226 ARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 77777765532 2233444444444555666666666665554 1112 2234444433334455444443331
Q ss_pred ---HH-----HHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCC--CCh---hhHHHHHH--------HHHcCCCch
Q 007329 323 ---YV-----IKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMES--KDV---VSWTTMIS--------CYEGSVLPD 381 (608)
Q Consensus 323 ---~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~---~~~~~li~--------~~~~~~~~~ 381 (608)
.+ ++. -+-|-.+|--.+..-...|+.+...++|++... |.. ..|...|- .-....+.+
T Consensus 305 ~KRk~qYE~~v~~-np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~e 383 (677)
T KOG1915|consen 305 GKRKFQYEKEVSK-NPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVE 383 (677)
T ss_pred hhhhhHHHHHHHh-CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 11 111 133444455555555566666666666666543 111 11211111 112345566
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHH----HccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHH
Q 007329 382 KAVETYQMMEAEGSMPDEITIASVLSAC----ACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVF 457 (608)
Q Consensus 382 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 457 (608)
.+.++++...+. ++-...||.-+=-.| .+..++..|.+++...+ |..|...+|...|..-.+.+++|.+..++
T Consensus 384 rtr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLY 460 (677)
T KOG1915|consen 384 RTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLY 460 (677)
T ss_pred HHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHH
Confidence 666666666552 222334444332222 24556666666665544 44555666666666666666666666666
Q ss_pred ccCCCC---CcccHHHHHHHHHhCCCchHHHHHHHHhHh--CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 007329 458 HQIPDK---NVISWTSIILGLRLNNRSFEALIFFRKMML--NLKPNSVTLVSILSACARIGALMCGKEIHAHALRI 528 (608)
Q Consensus 458 ~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 528 (608)
++..+- |..+|.-....-...|+.+.|..+|.-.+. .+......+...|.--...|.++.|..+++++++.
T Consensus 461 Ekfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 461 EKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 665532 334555555555556666666666666651 12222333444444445556666666666666654
No 45
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.53 E-value=6.4e-11 Score=117.83 Aligned_cols=167 Identities=12% Similarity=-0.019 Sum_probs=120.2
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCCc------ccHHHHHHHH
Q 007329 402 IASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNV------ISWTSIILGL 475 (608)
Q Consensus 402 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~l~~~~ 475 (608)
-+.++..|++.-+..+++..-+.....-+. ..|..||+.+......+.|..+.++...++. .-+..+.+.+
T Consensus 462 ~~ql~l~l~se~n~lK~l~~~ekye~~lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL 538 (1088)
T KOG4318|consen 462 ANQLHLTLNSEYNKLKILCDEEKYEDLLFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLL 538 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHH
Confidence 345556666666666666544443333222 6789999999999999999999999987654 4577788899
Q ss_pred HhCCCchHHHHHHHHhHh--CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHH
Q 007329 476 RLNNRSFEALIFFRKMML--NLKP-NSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKP 552 (608)
Q Consensus 476 ~~~~~~~~A~~~~~~m~~--~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 552 (608)
.+.+....+..+++++.+ ...| ...++-.++......|+.+...++++-+...|+.-+ .-++....+.++...
T Consensus 539 ~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~ 614 (1088)
T KOG4318|consen 539 QRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSA 614 (1088)
T ss_pred HHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhh
Confidence 999999999999999982 2333 345666777888889999999999999888887642 235555677888888
Q ss_pred HHHHHHhc----CCCHHHHHHHHHHHH
Q 007329 553 AWNQFNSN----ERDVSAWNILLTGYA 575 (608)
Q Consensus 553 A~~~~~~~----~~~~~~~~~l~~~~~ 575 (608)
|.+.++.. ++.+..-..+.+.+.
T Consensus 615 a~ea~e~~~qkyk~~P~~~e~lcrlv~ 641 (1088)
T KOG4318|consen 615 AQEAPEPEEQKYKPYPKDLEGLCRLVY 641 (1088)
T ss_pred hhhcchHHHHHhcCChHHHHHHHHHHH
Confidence 88887665 555555444444443
No 46
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=3.1e-10 Score=105.02 Aligned_cols=253 Identities=13% Similarity=0.018 Sum_probs=121.9
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCC--CCCcccchHHHHHHHhcCCh
Q 007329 272 GYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGF--SDDVSVCNPLIKMYLSFGNR 349 (608)
Q Consensus 272 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 349 (608)
++-...+.+++..-.+.....|+.-+...-+....+.-...++++|+.+|+++.+... -.|..+|..++-.-....++
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL 315 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL 315 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH
Confidence 3333444455555555555554443333333333334445555566666655555420 11233343333222111111
Q ss_pred HHHHHHHhhCCCCChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhC
Q 007329 350 EEGEKVFSRMESKDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTG 429 (608)
Q Consensus 350 ~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 429 (608)
.---...-.+.+=-+.|..++.+-|.-.++.++|...|++..+.+.. ....|+.+.+-|....+...|.+-++.+++-+
T Consensus 316 s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~ 394 (559)
T KOG1155|consen 316 SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN 394 (559)
T ss_pred HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC
Confidence 11111111111122233334444455555556666666665554311 23344445555555566666666666555544
Q ss_pred CCCchhHHHHHHHHhHhcCCHHHHHHHHccCC---CCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHH
Q 007329 430 LISYIIIANTLIDMYSKCKCIDKALEVFHQIP---DKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSIL 506 (608)
Q Consensus 430 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll 506 (608)
+-|-..|-.|.++|.-.+...-|+-.|++.. ..|...|.+|..+|.+.++.++|+..|++....-..+...+..|.
T Consensus 395 -p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~La 473 (559)
T KOG1155|consen 395 -PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLA 473 (559)
T ss_pred -chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHH
Confidence 4455555556666666666666666665544 234556666666666666666666666665533333455555666
Q ss_pred HHHhccCcHHHHHHHHHHHH
Q 007329 507 SACARIGALMCGKEIHAHAL 526 (608)
Q Consensus 507 ~~~~~~~~~~~a~~~~~~~~ 526 (608)
..+-+.++.++|.+.++..+
T Consensus 474 kLye~l~d~~eAa~~yek~v 493 (559)
T KOG1155|consen 474 KLYEELKDLNEAAQYYEKYV 493 (559)
T ss_pred HHHHHHHhHHHHHHHHHHHH
Confidence 66666666666655555444
No 47
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1.9e-11 Score=112.92 Aligned_cols=370 Identities=13% Similarity=0.122 Sum_probs=257.3
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHH--HHH
Q 007329 227 GYEADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTL--SSV 304 (608)
Q Consensus 227 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~--~~l 304 (608)
+...|...+-...-.+.+.|....|+..|......-+..|.+.+...--..+.+.+..+.. |...|...+ --+
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~-----~l~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVV-----GLPSDMHWMKKFFL 233 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHh-----cCcccchHHHHHHH
Confidence 3344555444445556677888999988887776555566655544333333333222211 122121111 123
Q ss_pred HHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCCC------ChhhHHHHHHHHHcCC
Q 007329 305 ISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESK------DVVSWTTMISCYEGSV 378 (608)
Q Consensus 305 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~~ 378 (608)
..++......+++.+-.+.....|++.+...-+....+.-...++++|+.+|+++.+. |..+|+.++ |+++.
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~ 311 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhh
Confidence 3456666678888888888888887777766666777777888999999999999873 455666655 33333
Q ss_pred CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHc
Q 007329 379 LPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFH 458 (608)
Q Consensus 379 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 458 (608)
+ ..+..+.+-...--+--+.|...+.+.|+-.++.++|...|+...+.+ +-....|+.+..-|....+...|.+-++
T Consensus 312 ~--skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 312 K--SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred h--HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 2 122222221111112334577788888888999999999999999887 5566778888888999999999999999
Q ss_pred cCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcc
Q 007329 459 QIPD---KNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGF 535 (608)
Q Consensus 459 ~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 535 (608)
...+ .|-..|..+..+|.-.+...=|+-.|++...-.+.|+..|.+|..+|.+.++.++|.+.+..+...|-. +..
T Consensus 389 rAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~ 467 (559)
T KOG1155|consen 389 RAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGS 467 (559)
T ss_pred HHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chH
Confidence 8765 456788889999999999999999999998555568889999999999999999999999999887744 668
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHHhc--------CCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchhhhh
Q 007329 536 LPNALLDMYVRCGRMKPAWNQFNSN--------ERDVSAWN---ILLTGYAERGQGALAEEFFRKMIDSKGNWRKLMGLF 604 (608)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 604 (608)
.+..|.+.|.+.++.++|...+++. ..+..+.. -|...+.+.+++++|..+......-+..-..-.+++
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~Ll 547 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKALL 547 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHHHH
Confidence 8889999999999999999988775 12332222 255567788899998887777665322222235555
Q ss_pred ccc
Q 007329 605 RKC 607 (608)
Q Consensus 605 ~ac 607 (608)
|-|
T Consensus 548 Rei 550 (559)
T KOG1155|consen 548 REI 550 (559)
T ss_pred HHH
Confidence 544
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=2.9e-12 Score=123.87 Aligned_cols=200 Identities=15% Similarity=0.085 Sum_probs=147.2
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCCcccHHH---HHHH
Q 007329 398 DEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTS---IILG 474 (608)
Q Consensus 398 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---l~~~ 474 (608)
.+.||..+.+.|.-+++.+.|++.|+..+..+ +-....|+.+..-+.....+|.|...|+.....|+..||+ +...
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~v 498 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTV 498 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhh
Confidence 45677777777777777777777777666543 2245666666666666777788888888777666655544 5667
Q ss_pred HHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHH
Q 007329 475 LRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAW 554 (608)
Q Consensus 475 ~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 554 (608)
|.+.++++.|+-.|++..+--+-+.+....+...+-+.|+.++|+++++++...+++ |+..--.-+..+...+++++|+
T Consensus 499 y~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal 577 (638)
T KOG1126|consen 499 YLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEAL 577 (638)
T ss_pred eeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHH
Confidence 888888888888888887333446667777777888888999999999988887776 4444444567777889999999
Q ss_pred HHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc
Q 007329 555 NQFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRK 599 (608)
Q Consensus 555 ~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 599 (608)
..++++ +.+...+..++..|.+.|+.+.|+.-|--+.+...++.+
T Consensus 578 ~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 578 QELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 988887 456777888888999999999998888888776555444
No 49
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=1.6e-10 Score=109.69 Aligned_cols=266 Identities=11% Similarity=0.011 Sum_probs=158.7
Q ss_pred CCcccchHHHHHHHhcCChHHHHHHHhhCCCC---ChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007329 331 DDVSVCNPLIKMYLSFGNREEGEKVFSRMESK---DVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLS 407 (608)
Q Consensus 331 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 407 (608)
-+..+.....+-+...+++.+..++++.+.+. +...+..-|.++...|+..+-..+=.++.+.- +-...+|-.+.-
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~ 320 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC 320 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence 34444444555556666777777777666653 23344444556666666666666666666552 224556666666
Q ss_pred HHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC---CCcccHHHHHHHHHhCCCchHH
Q 007329 408 ACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPD---KNVISWTSIILGLRLNNRSFEA 484 (608)
Q Consensus 408 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A 484 (608)
-|...|+.++|++.|.+....+ +.=...|-.....|.-.|.-|.|+..+....+ ..-..+--+..-|.+.++.+.|
T Consensus 321 YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHH
Confidence 6666677777777776655433 11234455666666666666666665544332 1111222334456666777777
Q ss_pred HHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhC--CCC----CccHHHHHHHHhHhcCCHHHHHHHHH
Q 007329 485 LIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIG--VAF----DGFLPNALLDMYVRCGRMKPAWNQFN 558 (608)
Q Consensus 485 ~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~ 558 (608)
.++|.+...-.|-|+..++-+.-.....+.+.+|..+|+..+..- ..+ -..+++.|+.+|.+.+++++|+..++
T Consensus 400 e~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q 479 (611)
T KOG1173|consen 400 EKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ 479 (611)
T ss_pred HHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 777777763333455566666656666677777777776655211 111 12235667777777777777777777
Q ss_pred hc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 559 SN----ERDVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 559 ~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
+. +.|..++.++.-.|...|+++.|.+.|.+.+. +.|+.+
T Consensus 480 ~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~ 523 (611)
T KOG1173|consen 480 KALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNI 523 (611)
T ss_pred HHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccH
Confidence 76 55677777777777777777777777777765 467664
No 50
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.48 E-value=2.3e-10 Score=104.25 Aligned_cols=284 Identities=12% Similarity=0.050 Sum_probs=172.7
Q ss_pred cCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHH
Q 007329 276 NGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKV 355 (608)
Q Consensus 276 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 355 (608)
.|+|.+|+++..+-.+.+-.| ...|..-.++....|+.+.+..++.++-+..-.++..++-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 567777777766655544322 2334444455556666666666666655542233333344444444445555554444
Q ss_pred HhhCCC---CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCC
Q 007329 356 FSRMES---KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLIS 432 (608)
Q Consensus 356 ~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 432 (608)
++++.+ .+.........+|.+.|++.....++.+|.+.|.--|...-. .
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~----------------------------l 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR----------------------------L 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH----------------------------H
Confidence 443332 334444444445555555555555555554444332221000 0
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHccCC---CCCcccHHHHHHHHHhCCCchHHHHHHHHhH-hCCCCCHHHHHHHHHH
Q 007329 433 YIIIANTLIDMYSKCKCIDKALEVFHQIP---DKNVISWTSIILGLRLNNRSFEALIFFRKMM-LNLKPNSVTLVSILSA 508 (608)
Q Consensus 433 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~-~~~~p~~~~~~~ll~~ 508 (608)
...+|+.+++-....+..+.-...++..+ +.++..-.+++.-+.+.|+.++|.++.++.. .+..|+ ...+-.
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~ 303 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIP 303 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHh
Confidence 01223334443444444444445555555 3455566667777778888888888888777 445554 333445
Q ss_pred HhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc---CCCHHHHHHHHHHHHhcCCHHHHHH
Q 007329 509 CARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN---ERDVSAWNILLTGYAERGQGALAEE 585 (608)
Q Consensus 509 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~ 585 (608)
+.+-++.+.-.+..++..+..+. ++..+.+|+..|.+.+.|.+|.+.|+.. .|+..+|+.+..++.+.|++++|.+
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h~~-~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~ 382 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQHPE-DPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQ 382 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHH
Confidence 66777888777777766655433 5588889999999999999999999987 8899999999999999999999999
Q ss_pred HHHHHHHc
Q 007329 586 FFRKMIDS 593 (608)
Q Consensus 586 ~~~~m~~~ 593 (608)
+.++....
T Consensus 383 ~r~e~L~~ 390 (400)
T COG3071 383 VRREALLL 390 (400)
T ss_pred HHHHHHHH
Confidence 99988744
No 51
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.46 E-value=1e-11 Score=120.21 Aligned_cols=277 Identities=10% Similarity=0.038 Sum_probs=149.7
Q ss_pred CchhhhHHHHHHHHhcCCcchhHHhHHHHHhhhcCChhhHHHHHcccCC------CCcchHHHHHHHHHhcCChhHHHHH
Q 007329 110 GYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFGDLGHAWYVFGKMCD------RDLFSWNVLIGGYAKAGFFDEALSL 183 (608)
Q Consensus 110 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~ 183 (608)
+..+|..+|+.+..... .+..+...+..+|...+++++|+++|+.+.+ .+...|.+.+.-+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~h~~-nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHY-NTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 34555555555322222 2224444555555555666666666655522 2444555555433221 11222
Q ss_pred HH-HHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCC
Q 007329 184 YQ-RMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKRD 262 (608)
Q Consensus 184 ~~-~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 262 (608)
+- .+.... +-.+.+|.++..+|.-.++.+.|.+.|+..+... +....+|+.+..-+.....+|.|...|+.....|
T Consensus 409 Laq~Li~~~--~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 409 LAQDLIDTD--PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHhhC--CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 11 111111 3334555555555555555555555555555432 2245566666666666677777777777776666
Q ss_pred HhHHHH---HHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHH
Q 007329 263 RISWNA---MISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPL 339 (608)
Q Consensus 263 ~~~~~~---li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 339 (608)
+..||+ +.-.|.+.++++.|+-.|++..+.+.. +......+...+.+.|+.|+|+++++++.... +.|+..-...
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~ 563 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHR 563 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHH
Confidence 665554 445677777777777777776664321 33444445555566666777777776666554 2333333344
Q ss_pred HHHHHhcCChHHHHHHHhhCCC--C-ChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCC
Q 007329 340 IKMYLSFGNREEGEKVFSRMES--K-DVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSM 396 (608)
Q Consensus 340 ~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 396 (608)
+..+...+++++|+..++++++ | +...+-.+...|.+.|+.+.|+.-|..+.+...+
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 4555556666666666666654 3 3444555556666666666666666666655433
No 52
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=2.2e-10 Score=106.65 Aligned_cols=398 Identities=11% Similarity=0.034 Sum_probs=225.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHHhhcCCCCC-hhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhhc
Q 007329 65 SRLNELCLNGSLEQALKYLDSMQELNICVD-EDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKF 143 (608)
Q Consensus 65 ~ll~~~~~~~~~~~A~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 143 (608)
..-.-+.++|++++|++.|.+.++ ..|+ +.-|.....+|...|+|+++.+.....++..+.- +..+..-.+++-..
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y-~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDY-VKALLRRASAHEQL 196 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHH-HHHHHHHHHHHHhh
Confidence 334567889999999999999988 5578 5667777778889999999999887777765432 33445556666677
Q ss_pred CChhhHHHHHcccCCCCcchHHHHHHHHHhcCChhHHHHHH--------HHHHh--cCCCCCCcchHHHHHHHhcCCC--
Q 007329 144 GDLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLY--------QRMFW--VGGVKPDVYTFPCVLRTCGGVP-- 211 (608)
Q Consensus 144 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~--------~~m~~--~~~~~p~~~~~~~ll~~~~~~~-- 211 (608)
|++++|+.-.- -.++..++..+.-..-+.+++ ++-.+ ..++-|+.....+....+...-
T Consensus 197 g~~~eal~D~t---------v~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~ 267 (606)
T KOG0547|consen 197 GKFDEALFDVT---------VLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKP 267 (606)
T ss_pred ccHHHHHHhhh---------HHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccc
Confidence 78777654222 222222222222222222222 22111 1223455444444444332110
Q ss_pred ----ChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-CCHHHHHHHHccC-------CC-C--CH------hHHHHHH
Q 007329 212 ----DLKRGKEVHVHVIRFGYEADVDVVNALITMYVKC-GDLVRARLVFDGM-------PK-R--DR------ISWNAMI 270 (608)
Q Consensus 212 ----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~-------~~-~--~~------~~~~~li 270 (608)
..+++-..+....+ ..+... ..+..|...+.+- .. . |. .+...-.
T Consensus 268 ~~~~~~~ksDa~l~~~l~--------------~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~g 333 (606)
T KOG0547|consen 268 LFDNKSDKSDAALAEALE--------------ALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRG 333 (606)
T ss_pred cccCCCccchhhHHHHHH--------------HHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhh
Confidence 00111111111100 000000 0122222222111 11 0 11 1111222
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChH
Q 007329 271 SGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNRE 350 (608)
Q Consensus 271 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 350 (608)
..+.-.|+...|..-|+........++.. |-.+...|....+.++....|+...+.. +-++.+|..-...+.-.++++
T Consensus 334 tF~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 334 TFHFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred hhhhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHH
Confidence 23344677778888888777654333322 6666667778888888888888887765 557778888888888888888
Q ss_pred HHHHHHhhCCCC---ChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 007329 351 EGEKVFSRMESK---DVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMR 427 (608)
Q Consensus 351 ~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 427 (608)
+|..-|++..+- ++..|-.+-.+.-+.+++++++..|++...+ ++--+..|+.....+...++++.|.+.|+..++
T Consensus 412 ~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 412 EAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 888888887763 3444555555556677888888888887765 333456777777888888888888888887765
Q ss_pred hCCC-------CchhHHHHHHHHhHhcCCHHHHHHHHccCCCCCc---ccHHHHHHHHHhCCCchHHHHHHHHhH
Q 007329 428 TGLI-------SYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNV---ISWTSIILGLRLNNRSFEALIFFRKMM 492 (608)
Q Consensus 428 ~~~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~ 492 (608)
.... +.+.+...++..- -.+++..|..++.+..+-|+ ..|..|.....+.|+.++|+++|++..
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4322 1111122222222 23666666666666655443 345566666666666666666666554
No 53
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.45 E-value=2.3e-08 Score=96.57 Aligned_cols=174 Identities=9% Similarity=0.033 Sum_probs=109.3
Q ss_pred chHHHHHHHHhCCChHHHHHHHHHHhhc-CCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHh
Q 007329 62 NPNSRLNELCLNGSLEQALKYLDSMQEL-NICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMF 140 (608)
Q Consensus 62 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~-g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (608)
.|-.-++.+.++|+...-...|++.++. -+......|...+......+-++-+..+++..++..+. .-+-.|..+
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~----~~eeyie~L 179 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPE----AREEYIEYL 179 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHH----HHHHHHHHH
Confidence 3555566777888888888888877552 33335566777777777788888888888887776543 245667778
Q ss_pred hhcCChhhHHHHHcccCCC----------CcchHHHHHHHHHhcCChhH---HHHHHHHHHhcCCCCCCc--chHHHHHH
Q 007329 141 VKFGDLGHAWYVFGKMCDR----------DLFSWNVLIGGYAKAGFFDE---ALSLYQRMFWVGGVKPDV--YTFPCVLR 205 (608)
Q Consensus 141 ~~~g~~~~A~~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~~~~~p~~--~~~~~ll~ 205 (608)
++.+++++|-+.+..+... +-..|..+-+..++.-+.-. ...+++.+.. .-+|. ..|..|..
T Consensus 180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~---rftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR---RFTDQLGFLWCSLAD 256 (835)
T ss_pred HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc---cCcHHHHHHHHHHHH
Confidence 8888888888888877432 23345555555544433222 2233333322 23443 35667777
Q ss_pred HhcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 007329 206 TCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVK 244 (608)
Q Consensus 206 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 244 (608)
-|.+.|.++.|..++++.+.. ..++.-|..+.+.|+.
T Consensus 257 YYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~ 293 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQ 293 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHH
Confidence 788888888888888777665 2334444455555543
No 54
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.42 E-value=4.1e-10 Score=102.67 Aligned_cols=276 Identities=10% Similarity=0.063 Sum_probs=180.6
Q ss_pred hcCCHHHHHHHHccCCCC---CHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHH
Q 007329 244 KCGDLVRARLVFDGMPKR---DRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREV 320 (608)
Q Consensus 244 ~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 320 (608)
..|++.+|+++..+-.+. ....|-.-+.+--+.|+.+.+-.++.+.-+.--.++...+.+........|+.+.|..-
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 469999999999876543 44566666777888999999999999998864456666777777888999999999999
Q ss_pred HHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCCCCh-----------hhHHHHHHHHHcCCCchHHHHHHHH
Q 007329 321 HGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDV-----------VSWTTMISCYEGSVLPDKAVETYQM 389 (608)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~~li~~~~~~~~~~~a~~~~~~ 389 (608)
+.++.+.+ +-++.+......+|.+.|++.....++..+.+... .+|+.+++-....+..+.-...++.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 99999886 66788889999999999999999999999987322 2455555555555554554445554
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCC---CCCcc
Q 007329 390 MEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIP---DKNVI 466 (608)
Q Consensus 390 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~ 466 (608)
.... .+-++..-..++.-+.+.|+.++|.++..+..+.+..++... .-.+.+-++.+.-.+..+.-. ..++.
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~----~~~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR----LIPRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH----HHhhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 4332 344555666677777777777777777777777766655111 112223333333333222211 22334
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 007329 467 SWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHAL 526 (608)
Q Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 526 (608)
.+.+|...|.+++.+.+|.+.|+... ...|+..+|+.+..++.+.|+..+|.++.++..
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl-~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAAL-KLRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH-hcCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 45555555555555555555555444 445555555555555555555555555555444
No 55
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=1.4e-08 Score=96.77 Aligned_cols=282 Identities=14% Similarity=0.095 Sum_probs=149.9
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHH
Q 007329 262 DRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIK 341 (608)
Q Consensus 262 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 341 (608)
++........-+...+++.+..++++...+. .++....+..=|.++...|+..+-..+=..+++. .+..+.+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 3334444455555666666666666666554 2333444444444555666655555555555544 2445566666666
Q ss_pred HHHhcCChHHHHHHHhhCCCCC---hhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHH
Q 007329 342 MYLSFGNREEGEKVFSRMESKD---VVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLG 418 (608)
Q Consensus 342 ~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 418 (608)
.|.-.|+..+|.+.|.+...-| ...|-.+...|.-.|..++|+..+...-+.- +-...-+..+.--|.+.++.+.|
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHH
Confidence 6666666666666666654422 2346666666666666666666665544421 11111122233345555666666
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCC
Q 007329 419 IKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPN 498 (608)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~ 498 (608)
.++|.+..... +.|+.+.+-+.-.....+.+.+|..+|+.... ..+.......--
T Consensus 400 e~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~------------------------~ik~~~~e~~~w 454 (611)
T KOG1173|consen 400 EKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALE------------------------VIKSVLNEKIFW 454 (611)
T ss_pred HHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHH------------------------Hhhhccccccch
Confidence 66666555433 44455555555555555555555555554321 000000001112
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc---CCCHHHHHHHHH
Q 007329 499 SVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN---ERDVSAWNILLT 572 (608)
Q Consensus 499 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~l~~ 572 (608)
..+++.|..+|.+.+.+++|+..+++.+...++ +..++.+++-.|...|+++.|.+.|.+. .||..+-..++.
T Consensus 455 ~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 455 EPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred hHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 345566666666666666666666666665554 6666666666666666666666666665 555544444443
No 56
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.37 E-value=5.3e-09 Score=93.62 Aligned_cols=453 Identities=11% Similarity=0.076 Sum_probs=285.6
Q ss_pred HHHhhhcCChhhHHHHHcccCCCC---cchHH-HHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCC
Q 007329 137 LSMFVKFGDLGHAWYVFGKMCDRD---LFSWN-VLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPD 212 (608)
Q Consensus 137 ~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~-~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~ 212 (608)
+.-+....++..|+.+++--...+ ....+ .+..++.+.|++++|+..+..+.+.. .|+......+.-+..-.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHHH
Confidence 445667789999999987653211 11223 34556778999999999999987754 6777776666666667788
Q ss_pred hhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 007329 213 LKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREV 292 (608)
Q Consensus 213 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 292 (608)
+.+|+++-... +.+......|...-.+.|+-++-..+-+.+.+.. .---+|.......-.+++|++++.+....
T Consensus 107 Y~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 107 YIEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88888876543 2333444455566667788777777666665432 22223444444455789999999998875
Q ss_pred CCCCChhHHHHHH-HHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHH
Q 007329 293 LVDPDFMTLSSVI-SASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVVSWTTMI 371 (608)
Q Consensus 293 ~~~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li 371 (608)
.|+-...+.-+ -+|.+..-++.+.++++-..+. ++.++...|.......+.=+-..|+.-.+++...-...| ..+
T Consensus 181 --n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~-~f~ 256 (557)
T KOG3785|consen 181 --NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEY-PFI 256 (557)
T ss_pred --ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccc-hhH
Confidence 34444555443 4566888888888888877665 233344444444443333221222222222221111111 122
Q ss_pred HHHHcC-----CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH---
Q 007329 372 SCYEGS-----VLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDM--- 443 (608)
Q Consensus 372 ~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--- 443 (608)
.-.++. ..-+.|++++-.+.+. .|.. -..|+-.|.+.+++.+|..+.+++.- ..|-..+...++.+
T Consensus 257 ~~l~rHNLVvFrngEgALqVLP~L~~~--IPEA--RlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalG 330 (557)
T KOG3785|consen 257 EYLCRHNLVVFRNGEGALQVLPSLMKH--IPEA--RLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALG 330 (557)
T ss_pred HHHHHcCeEEEeCCccHHHhchHHHhh--ChHh--hhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhh
Confidence 233333 2447888887666653 3332 23455568899999999988765431 12222222222221
Q ss_pred --hHhcCCHHHHHHHHccCCC-----CCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHH
Q 007329 444 --YSKCKCIDKALEVFHQIPD-----KNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALM 516 (608)
Q Consensus 444 --~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~ 516 (608)
......+.-|...|+-.-+ ..+.--.++..++.-..++++.+..+..+..-+..|..--..+..+.+..|.+.
T Consensus 331 Qe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~ 410 (557)
T KOG3785|consen 331 QETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYV 410 (557)
T ss_pred hhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChH
Confidence 1122335556677765442 233345567777777788999998888887445555555556889999999999
Q ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc-CC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 517 CGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN-ER-DVS-AWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 517 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
+|+++|-++....++-+..-...|..+|.+.|+.+.|++++-++ .| +.. ....+.+-|.+.|++=-|...|+.+...
T Consensus 411 eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 411 EAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred HHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence 99999988877666633333445788999999999999999998 22 333 3445667799999999999999999888
Q ss_pred CCCCCchhhhhccc
Q 007329 594 KGNWRKLMGLFRKC 607 (608)
Q Consensus 594 g~~p~~~~~~~~ac 607 (608)
+..|+...+...||
T Consensus 491 DP~pEnWeGKRGAC 504 (557)
T KOG3785|consen 491 DPTPENWEGKRGAC 504 (557)
T ss_pred CCCccccCCccchH
Confidence 78888876666666
No 57
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.36 E-value=1.4e-09 Score=96.25 Aligned_cols=216 Identities=13% Similarity=0.113 Sum_probs=121.7
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhcCCHHH
Q 007329 174 AGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEAD---VDVVNALITMYVKCGDLVR 250 (608)
Q Consensus 174 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~ 250 (608)
.++.++|.++|-+|.+.. +-...+--++.+.|.+.|.++.|..+.+.+.+..--+. ....-.|..-|...|-+|.
T Consensus 48 s~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 356677777777776532 33334444566666677777777777776665421111 2234456677888888899
Q ss_pred HHHHHccCCCC---CHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh----HHHHHHHHHhhcCChhhHHHHHHH
Q 007329 251 ARLVFDGMPKR---DRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFM----TLSSVISASELVGDEKLGREVHGY 323 (608)
Q Consensus 251 A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~ 323 (608)
|+.+|..+.+. -......|+..|-...+|++|+++-+++.+.+-.+... .|.-+...+....+.+.|..++..
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 99988888774 34466778888888999999999888888765444332 233344444444555566665555
Q ss_pred HHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCCCChh----hHHHHHHHHHcCCCchHHHHHHHHHHH
Q 007329 324 VIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVV----SWTTMISCYEGSVLPDKAVETYQMMEA 392 (608)
Q Consensus 324 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~ 392 (608)
..+.. +..+..--.+.+.+...|+++.|.+.++.+.+.|.. +...|..+|.+.|+.++....+..+.+
T Consensus 206 Alqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 206 ALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 55443 222222233344444445555554444444442221 233333444444444444444444443
No 58
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.36 E-value=6.2e-10 Score=98.37 Aligned_cols=215 Identities=14% Similarity=0.139 Sum_probs=100.8
Q ss_pred CCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhhcCChhhHHHHHcccCC-CCcc------hHHHHHHHHHhcCChhHHH
Q 007329 109 RGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFGDLGHAWYVFGKMCD-RDLF------SWNVLIGGYAKAGFFDEAL 181 (608)
Q Consensus 109 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~------~~~~li~~~~~~g~~~~a~ 181 (608)
++.++|..+|-+|.+..++ +..+.-+|.+.|-+.|..+.|+++-+.+.+ ||.. +.-.|..-|...|-+|.|.
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 3455555555555553322 233444555555555555555555555432 3221 2233444555566666666
Q ss_pred HHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCch----hHHHHHHHHHHhcCCHHHHHHHHcc
Q 007329 182 SLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADV----DVVNALITMYVKCGDLVRARLVFDG 257 (608)
Q Consensus 182 ~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~ 257 (608)
++|..+...+ .--......++..|-...+|++|.++-+++.+.|..+.. ..|.-|...+....+++.|..++.+
T Consensus 128 ~~f~~L~de~--efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 128 DIFNQLVDEG--EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHhcch--hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 6666655433 222334445555555555565555555555555433321 2233344444444555555555544
Q ss_pred CCCCC---HhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHH
Q 007329 258 MPKRD---RISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIK 326 (608)
Q Consensus 258 ~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 326 (608)
..+.| +..--.+.+.....|++++|++.++...+.+..--..+...|..+|...|+.++....+..+.+
T Consensus 206 Alqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 206 ALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 43321 2222233344455555555555555555443222233334444444444444444444444433
No 59
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.34 E-value=4.4e-08 Score=94.73 Aligned_cols=454 Identities=14% Similarity=0.148 Sum_probs=260.0
Q ss_pred hhHHhHHHHHhhhcCChhhHHHHHcccCC-----CCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHH
Q 007329 130 VRLGNAFLSMFVKFGDLGHAWYVFGKMCD-----RDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVL 204 (608)
Q Consensus 130 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll 204 (608)
+..|-..+..+.++|++..-+..|+.... .....|...+...-..|-++-++.++++..+ +.|. .-.--|
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk---~~P~--~~eeyi 176 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK---VAPE--AREEYI 176 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh---cCHH--HHHHHH
Confidence 45566667777778888887777776522 3445677778777778888888888888764 2333 356667
Q ss_pred HHhcCCCChhhHHHHHHHHHHh------CCCCchhHHHHHHHHHHhcCCH---HHHHHHHccCCCC--C--HhHHHHHHH
Q 007329 205 RTCGGVPDLKRGKEVHVHVIRF------GYEADVDVVNALITMYVKCGDL---VRARLVFDGMPKR--D--RISWNAMIS 271 (608)
Q Consensus 205 ~~~~~~~~~~~a~~~~~~~~~~------g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~--~--~~~~~~li~ 271 (608)
..++..+++++|.+.+...+.. ..+.+...|..+.+...+.-+. -....+++.+..+ | ...|+.|.+
T Consensus 177 e~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 177 EYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLAD 256 (835)
T ss_pred HHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHH
Confidence 7778888888888887776632 1255566677776666655332 2344555655554 2 346888888
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCC----------------------hhhHHHHHHHHHHhCC
Q 007329 272 GYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGD----------------------EKLGREVHGYVIKMGF 329 (608)
Q Consensus 272 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~----------------------~~~a~~~~~~~~~~~~ 329 (608)
-|.+.|.+++|.++|++-... ..+..-|+.+..+|+.-.. ++....-|+.+...+.
T Consensus 257 YYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~ 334 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRP 334 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccc
Confidence 888888888888888877664 2233334444444332111 1122222333222210
Q ss_pred -----------CCCcccchHHHHHHHhcCChHHHHHHHhhCCC---C------ChhhHHHHHHHHHcCCCchHHHHHHHH
Q 007329 330 -----------SDDVSVCNPLIKMYLSFGNREEGEKVFSRMES---K------DVVSWTTMISCYEGSVLPDKAVETYQM 389 (608)
Q Consensus 330 -----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~------~~~~~~~li~~~~~~~~~~~a~~~~~~ 389 (608)
+.+...|..-+ -+..|+..+....|.+... | -...|..+.+.|-..|+.+.|..+|++
T Consensus 335 ~~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifek 412 (835)
T KOG2047|consen 335 LLLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEK 412 (835)
T ss_pred hHHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 11111111111 1122444444444444432 1 123577777888888888888888888
Q ss_pred HHHCCCCCC---HHHHHHHHHHHHccCChHHHHHHHHHHHHh-----------CCCC------chhHHHHHHHHhHhcCC
Q 007329 390 MEAEGSMPD---EITIASVLSACACLGNLDLGIKLHQLAMRT-----------GLIS------YIIIANTLIDMYSKCKC 449 (608)
Q Consensus 390 m~~~g~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----------~~~~------~~~~~~~li~~~~~~g~ 449 (608)
......+-- ..+|......=.+..+++.|..+++..... +.++ +..+|..+++.--..|-
T Consensus 413 a~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gt 492 (835)
T KOG2047|consen 413 ATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGT 492 (835)
T ss_pred hhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 776543321 233444444445667777787777655421 1111 23455556666666788
Q ss_pred HHHHHHHHccCCCCCcccHHHHH---HHHHhCCCchHHHHHHHHhHhCCC-CC-HHHHHHHHHHHhc---cCcHHHHHHH
Q 007329 450 IDKALEVFHQIPDKNVISWTSII---LGLRLNNRSFEALIFFRKMMLNLK-PN-SVTLVSILSACAR---IGALMCGKEI 521 (608)
Q Consensus 450 ~~~A~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~A~~~~~~m~~~~~-p~-~~~~~~ll~~~~~---~~~~~~a~~~ 521 (608)
++....+++++.+-.+.|=..++ .-+-.+.-++++.+.|++-+.-++ |+ ...|+..+.-+.+ ...+++|..+
T Consensus 493 festk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdL 572 (835)
T KOG2047|consen 493 FESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDL 572 (835)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 88888888887754443333333 233455567888888887763333 23 2355555555543 2467888888
Q ss_pred HHHHHHhCCCCCccH--HHHHHHHhHhcCCHHHHHHHHHhc----CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 522 HAHALRIGVAFDGFL--PNALLDMYVRCGRMKPAWNQFNSN----ER--DVSAWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 522 ~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~----~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
|+++++ |..|...- |-.....=.+-|-...|+.+++++ ++ -...|+..|.--...=-+..-.++|++.++.
T Consensus 573 FEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~ 651 (835)
T KOG2047|consen 573 FEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES 651 (835)
T ss_pred HHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh
Confidence 888888 44444322 212222223457778888888887 22 1345666665433322233345566666553
No 60
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=7e-08 Score=92.61 Aligned_cols=451 Identities=14% Similarity=0.062 Sum_probs=219.0
Q ss_pred hHHHHHHHHhCCChHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhH--HHHHh
Q 007329 63 PNSRLNELCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNA--FLSMF 140 (608)
Q Consensus 63 ~~~ll~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~ 140 (608)
..+-++.+.++|++++|.....++...+ +-+...+..-+-++.+.+.+++|+.+.+. .+. ..+++. +=.+|
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~---~~~~~~~~fEKAY 87 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NGA---LLVINSFFFEKAY 87 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cch---hhhcchhhHHHHH
Confidence 4555677778888888888888888744 34556677777778888888888755332 111 111122 23333
Q ss_pred --hhcCChhhHHHHHcccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcc--hHHHHHHHhcCCCChhhH
Q 007329 141 --VKFGDLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVY--TFPCVLRTCGGVPDLKRG 216 (608)
Q Consensus 141 --~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~--~~~~ll~~~~~~~~~~~a 216 (608)
.+.+..++|+..++...+.+..+...-...+.+.|++++|+.+|+.+.+.+ .+|.. .-..++.+-. +
T Consensus 88 c~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~--~dd~d~~~r~nl~a~~a-------~ 158 (652)
T KOG2376|consen 88 CEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNN--SDDQDEERRANLLAVAA-------A 158 (652)
T ss_pred HHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHH-------h
Confidence 366888888888885544454455555667778888888888888886654 22211 1111111110 0
Q ss_pred HHHHHHHHHhCCCCchhHHHHH---HHHHHhcCCHHHHHHHHccCC--------CCCH-----h-----HHHHHHHHHHh
Q 007329 217 KEVHVHVIRFGYEADVDVVNAL---ITMYVKCGDLVRARLVFDGMP--------KRDR-----I-----SWNAMISGYFE 275 (608)
Q Consensus 217 ~~~~~~~~~~g~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~~~--------~~~~-----~-----~~~~li~~~~~ 275 (608)
... +.+......| ..+|..+ ...+...|++.+|+++++... +.|. . .--.|..++..
T Consensus 159 l~~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~ 236 (652)
T KOG2376|consen 159 LQV-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL 236 (652)
T ss_pred hhH-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 000 0122222222 2222222 233455667777776666541 1110 0 11123334445
Q ss_pred cCChhHHHHHHHHHHHCCCCCChhHHHHHHH---HHhhcCChhh--HHHHHHHHHHhCCCCCcccchHHHHHHHhcCChH
Q 007329 276 NGEYMKGLMLFIMMREVLVDPDFMTLSSVIS---ASELVGDEKL--GREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNRE 350 (608)
Q Consensus 276 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~---~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 350 (608)
.|+.++|..++....+... +|........+ ++....++-. ++..++.. ...
T Consensus 237 ~Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~-----------------------~~~ 292 (652)
T KOG2376|consen 237 QGQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQ-----------------------VFK 292 (652)
T ss_pred hcchHHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHH-----------------------HHH
Confidence 5555555555555554422 22221111111 1111111100 00000000 000
Q ss_pred HHHHHHhhCCC---CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc--cCChHHHHHHHHHH
Q 007329 351 EGEKVFSRMES---KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACAC--LGNLDLGIKLHQLA 425 (608)
Q Consensus 351 ~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~~~~~~a~~~~~~~ 425 (608)
-+..+...+.. .....-+.++..|.. ..+.+.++...... ..|. ..+..++..+.+ ......+.+++...
T Consensus 293 l~~~~l~~Ls~~qk~~i~~N~~lL~l~tn--k~~q~r~~~a~lp~--~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~ 367 (652)
T KOG2376|consen 293 LAEFLLSKLSKKQKQAIYRNNALLALFTN--KMDQVRELSASLPG--MSPE-SLFPILLQEATKVREKKHKKAIELLLQF 367 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHhCCc--cCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 01111111111 111111222222222 12333333222211 1222 233334433322 12345555555554
Q ss_pred HHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHc--------cCCC--CCcccHHHHHHHHHhCCCchHHHHHHHHhH---
Q 007329 426 MRTGLISYIIIANTLIDMYSKCKCIDKALEVFH--------QIPD--KNVISWTSIILGLRLNNRSFEALIFFRKMM--- 492 (608)
Q Consensus 426 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~--------~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~--- 492 (608)
.+....-...+.-..+......|+++.|.+++. .+.+ ..+.+..++...+.+.++.+.|..++.+..
T Consensus 368 ~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~ 447 (652)
T KOG2376|consen 368 ADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWW 447 (652)
T ss_pred hccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHH
Confidence 443322234455556666677777777777777 3321 233455556666666666666666666665
Q ss_pred hCCCCCHHHHHHHHHH----HhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhcCC
Q 007329 493 LNLKPNSVTLVSILSA----CARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSNER 562 (608)
Q Consensus 493 ~~~~p~~~~~~~ll~~----~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 562 (608)
....+......++++- -.+.|+-++|..+++++.+.++. |..+...++.+|++. +.+.|..+-+.+.|
T Consensus 448 ~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~-d~~~l~~lV~a~~~~-d~eka~~l~k~L~p 519 (652)
T KOG2376|consen 448 RKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPN-DTDLLVQLVTAYARL-DPEKAESLSKKLPP 519 (652)
T ss_pred HHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCc-hHHHHHHHHHHHHhc-CHHHHHHHhhcCCC
Confidence 2233333434443332 24568888888888888876654 777777788877764 56777777777633
No 61
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=3.2e-08 Score=94.88 Aligned_cols=409 Identities=12% Similarity=0.079 Sum_probs=234.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHH--HHHHH--H
Q 007329 168 IGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNA--LITMY--V 243 (608)
Q Consensus 168 i~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~~--~ 243 (608)
++-+...|++++|.+...++...+ +-|...+..-+-++.+.+.+++|+.+.+.-.. ..+++. +=.+| .
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYCEY 90 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHHHH
Confidence 445566777888888888777543 45556667777777788888877754442111 111111 23344 4
Q ss_pred hcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhhcCChhhHHHHHH
Q 007329 244 KCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPD-FMTLSSVISASELVGDEKLGREVHG 322 (608)
Q Consensus 244 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~ 322 (608)
+.+..++|+..++...+.|..+...-...+.+.|++++|+++|+.+.+.+..-- ...-..++.+-.. -.+ +
T Consensus 91 rlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~----~ 162 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQV----Q 162 (652)
T ss_pred HcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhH----H
Confidence 678899999999866666766777777888899999999999999877643211 1111112111110 001 0
Q ss_pred HHHHhCCCCCcccchH---HHHHHHhcCChHHHHHHHhhCC--------CCC-----hh-----hHHHHHHHHHcCCCch
Q 007329 323 YVIKMGFSDDVSVCNP---LIKMYLSFGNREEGEKVFSRME--------SKD-----VV-----SWTTMISCYEGSVLPD 381 (608)
Q Consensus 323 ~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~--------~~~-----~~-----~~~~li~~~~~~~~~~ 381 (608)
.+......| ..+|.. ....+...|++.+|+++++... ..| .. .-..|...+...|+..
T Consensus 163 ~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 163 LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 111222222 223333 3445667789999999888772 111 11 1223444667789999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHH---HHHHHccCChHH--HHHHHHH-----------HHHhCCCCchhHHHHHHHHhH
Q 007329 382 KAVETYQMMEAEGSMPDEITIASV---LSACACLGNLDL--GIKLHQL-----------AMRTGLISYIIIANTLIDMYS 445 (608)
Q Consensus 382 ~a~~~~~~m~~~g~~p~~~t~~~l---l~~~~~~~~~~~--a~~~~~~-----------~~~~~~~~~~~~~~~li~~~~ 445 (608)
+|..++...+... .+|....... |.+.....++-. ++..++. +......-....-+.++.+|
T Consensus 242 ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~- 319 (652)
T KOG2376|consen 242 EASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF- 319 (652)
T ss_pred HHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 9999999988875 3344322222 222222222111 1111111 11111111122223444444
Q ss_pred hcCCHHHHHHHHccCCCCC-cccHHHHHHHH--HhCCCchHHHHHHHHhHhCCCCC-HHHHHHHHHHHhccCcHHHHHHH
Q 007329 446 KCKCIDKALEVFHQIPDKN-VISWTSIILGL--RLNNRSFEALIFFRKMMLNLKPN-SVTLVSILSACARIGALMCGKEI 521 (608)
Q Consensus 446 ~~g~~~~A~~~~~~~~~~~-~~~~~~l~~~~--~~~~~~~~A~~~~~~m~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~ 521 (608)
.+..+.+.++-....... ...+.+++..+ ++...+.+|.+++.....+.+-+ ..+....+......|+++.|.++
T Consensus 320 -tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~i 398 (652)
T KOG2376|consen 320 -TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEI 398 (652)
T ss_pred -hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 355567777766666432 23344444332 22335677777777776454444 44555666777888999999988
Q ss_pred HH--------HHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc-------CCC----HHHHHHHHHHHHhcCCHHH
Q 007329 522 HA--------HALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN-------ERD----VSAWNILLTGYAERGQGAL 582 (608)
Q Consensus 522 ~~--------~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~----~~~~~~l~~~~~~~g~~~~ 582 (608)
+. .+.+.+.. +.+...++..|.+.++.+.|.+++.+. .+. ..+|.-++..-.+.|+-++
T Consensus 399 l~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~e 476 (652)
T KOG2376|consen 399 LSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEE 476 (652)
T ss_pred HHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHH
Confidence 88 44444444 445566778888888877777777665 222 2345555555667799999
Q ss_pred HHHHHHHHHHcCCCCCch
Q 007329 583 AEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 583 A~~~~~~m~~~g~~p~~~ 600 (608)
|..+++++.+. .|++.
T Consensus 477 a~s~leel~k~--n~~d~ 492 (652)
T KOG2376|consen 477 ASSLLEELVKF--NPNDT 492 (652)
T ss_pred HHHHHHHHHHh--CCchH
Confidence 99999999874 55555
No 62
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.29 E-value=3.5e-08 Score=88.51 Aligned_cols=447 Identities=12% Similarity=0.011 Sum_probs=255.0
Q ss_pred HHHHHhCCChHHHHHHHHHHhhcCCCCChhhHHH-HHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhhcCC
Q 007329 67 LNELCLNGSLEQALKYLDSMQELNICVDEDALVN-LVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFGD 145 (608)
Q Consensus 67 l~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 145 (608)
+..+..+.++..|+.+++.-...+-.-. ..... +..++...|++++|...+..+.... .++...+..|.-++.-.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE-~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEE-DSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhh-HHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHH
Confidence 7788889999999999987664333222 23333 3345678899999999998877743 4566666666666667789
Q ss_pred hhhHHHHHcccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHH
Q 007329 146 LGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIR 225 (608)
Q Consensus 146 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 225 (608)
+.+|..+-.+.++ ++..-..|+...-+.|+-++-..+-+.+... . ..-.++.......-++++|.+++.....
T Consensus 107 Y~eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~---~---EdqLSLAsvhYmR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 107 YIEAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT---L---EDQLSLASVHYMRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHHHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh---H---HHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999988877644 2333445555566677776666665554321 1 1122333333344467788888887776
Q ss_pred hCCCCchhHHHHH-HHHHHhcCCHHHHHHHHccCCC---CCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHH
Q 007329 226 FGYEADVDVVNAL-ITMYVKCGDLVRARLVFDGMPK---RDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTL 301 (608)
Q Consensus 226 ~g~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 301 (608)
. .|.-...|.- .-+|.+.+-++-+.+++.-... .++..-|..+....+.=.-..|.+-..++.+.+-..-.. .
T Consensus 180 d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f-~ 256 (557)
T KOG3785|consen 180 D--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPF-I 256 (557)
T ss_pred c--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchh-H
Confidence 5 2333333433 3345666666666555543332 244455555544444333333444444444332111000 0
Q ss_pred HHHH-HHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHcCCC-
Q 007329 302 SSVI-SASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVVSWTTMISCYEGSVL- 379 (608)
Q Consensus 302 ~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~- 379 (608)
.-++ +-+.--.+-+.|.+++--+.+. .|.. --.|+-.|.+.+++++|..+.+++....+.-|-.-.-.++..|+
T Consensus 257 ~~l~rHNLVvFrngEgALqVLP~L~~~--IPEA--RlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe 332 (557)
T KOG3785|consen 257 EYLCRHNLVVFRNGEGALQVLPSLMKH--IPEA--RLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQE 332 (557)
T ss_pred HHHHHcCeEEEeCCccHHHhchHHHhh--ChHh--hhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhh
Confidence 1111 1112224556666666555443 2322 23355567888999999998888876444433322223333333
Q ss_pred ------chHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHH
Q 007329 380 ------PDKAVETYQMMEAEGSMPDEI-TIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDK 452 (608)
Q Consensus 380 ------~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 452 (608)
..-|.+.|+-.-+.+..-|.. --..+...+.-..++++++-.+..+...-...|...+| +..+++..|...+
T Consensus 333 ~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~e 411 (557)
T KOG3785|consen 333 TGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVE 411 (557)
T ss_pred cCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHH
Confidence 233444444433333322211 11223333444456777777777666554444444444 6778888888888
Q ss_pred HHHHHccCCCCC---cccHHHH-HHHHHhCCCchHHHHHHHHhHhCCCCCHHHHH-HHHHHHhccCcHHHHHHHHHHHHH
Q 007329 453 ALEVFHQIPDKN---VISWTSI-ILGLRLNNRSFEALIFFRKMMLNLKPNSVTLV-SILSACARIGALMCGKEIHAHALR 527 (608)
Q Consensus 453 A~~~~~~~~~~~---~~~~~~l-~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~ 527 (608)
|.++|-.+..|+ -.+|-++ ..+|...+.++.|++++-++. -+.+..+.. .+..-|.+.+.+=-|-+.|+++..
T Consensus 412 aEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~--t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~ 489 (557)
T KOG3785|consen 412 AEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN--TPSERFSLLQLIANDCYKANEFYYAAKAFDELEI 489 (557)
T ss_pred HHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC--CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc
Confidence 888888877543 4566554 567788888888887776663 333333333 344667777877777777777776
Q ss_pred hCCCC
Q 007329 528 IGVAF 532 (608)
Q Consensus 528 ~~~~p 532 (608)
.++.|
T Consensus 490 lDP~p 494 (557)
T KOG3785|consen 490 LDPTP 494 (557)
T ss_pred cCCCc
Confidence 55443
No 63
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.29 E-value=1.1e-09 Score=100.51 Aligned_cols=189 Identities=13% Similarity=0.055 Sum_probs=109.6
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC---CCcccHHHHHHHHHhC
Q 007329 402 IASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPD---KNVISWTSIILGLRLN 478 (608)
Q Consensus 402 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~ 478 (608)
+..+...+...|++++|.+.++.+.+.. +.+...+..+...|...|++++|.+.+++..+ .+...+..+...+...
T Consensus 34 ~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 112 (234)
T TIGR02521 34 RVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQ 112 (234)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Confidence 3334444444444444444444444332 22233444444444455555555554444331 1223444555555666
Q ss_pred CCchHHHHHHHHhHh--CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHH
Q 007329 479 NRSFEALIFFRKMML--NLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQ 556 (608)
Q Consensus 479 ~~~~~A~~~~~~m~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 556 (608)
|++++|.+.+++... ..+.....+..+..++...|++++|.+.+++..+..+. +...+..+...+...|++++|.+.
T Consensus 113 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~ 191 (234)
T TIGR02521 113 GKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKDARAY 191 (234)
T ss_pred ccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666666652 11223445556666777777777777777777765443 445666777777778888888877
Q ss_pred HHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007329 557 FNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKMID 592 (608)
Q Consensus 557 ~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 592 (608)
++++ +.+...+..++..+...|+.+.|..+.+.+..
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 192 LERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 7776 33556666777777778888888887777754
No 64
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=2.9e-08 Score=90.93 Aligned_cols=301 Identities=11% Similarity=-0.034 Sum_probs=219.0
Q ss_pred CCChhHHHHHHHHHh--hcCChhhHHHHHHHHHHh-CCCCCcccchHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHH-
Q 007329 295 DPDFMTLSSVISASE--LVGDEKLGREVHGYVIKM-GFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVVSWTTM- 370 (608)
Q Consensus 295 ~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l- 370 (608)
.|+..+...-+.+++ ..++...+...+-.+... -++.|......+.+.+...|+.++|+..|+....-|+.+...|
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD 270 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMD 270 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHH
Confidence 444444444444433 344444444444444333 3677888889999999999999999999999877555544333
Q ss_pred --HHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcC
Q 007329 371 --ISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCK 448 (608)
Q Consensus 371 --i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 448 (608)
...+.+.|+.+....+...+.... +-....|..-+.......+++.|+.+-++.++.+ +-+...+-.-..++...|
T Consensus 271 ~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~ 348 (564)
T KOG1174|consen 271 LYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALE 348 (564)
T ss_pred HHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhcc
Confidence 224567888898888888887653 1223334344445556778889998888877655 334444544456677889
Q ss_pred CHHHHHHHHccCC--C-CCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHH-HHHhc-cCcHHHHHHHHH
Q 007329 449 CIDKALEVFHQIP--D-KNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSIL-SACAR-IGALMCGKEIHA 523 (608)
Q Consensus 449 ~~~~A~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll-~~~~~-~~~~~~a~~~~~ 523 (608)
+.++|.-.|.... . -+...|.-|+.+|...|++.+|.-+-.+....++.+..++..+. ..|.. -..-++|.++++
T Consensus 349 R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~e 428 (564)
T KOG1174|consen 349 RHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAE 428 (564)
T ss_pred chHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHH
Confidence 9999999998765 3 36689999999999999999999998888766777777777663 44443 334577888888
Q ss_pred HHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 524 HALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN---ERDVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 524 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
...+..+. -....+.+...+.+.|+.++++.++++. .||....+.|...+...+.+++|.+.|...++. .|++-
T Consensus 429 k~L~~~P~-Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~--dP~~~ 505 (564)
T KOG1174|consen 429 KSLKINPI-YTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ--DPKSK 505 (564)
T ss_pred hhhccCCc-cHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--Cccch
Confidence 87765433 2334567788899999999999999988 899999999999999999999999999998875 66654
No 65
>PF13041 PPR_2: PPR repeat family
Probab=99.27 E-value=1.3e-11 Score=80.89 Aligned_cols=50 Identities=26% Similarity=0.383 Sum_probs=44.1
Q ss_pred CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 007329 362 KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACAC 411 (608)
Q Consensus 362 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 411 (608)
||+++||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68888999999999999999999999999999999999999999888874
No 66
>PF13041 PPR_2: PPR repeat family
Probab=99.26 E-value=1.8e-11 Score=80.18 Aligned_cols=50 Identities=30% Similarity=0.513 Sum_probs=45.8
Q ss_pred CCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhh
Q 007329 261 RDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASEL 310 (608)
Q Consensus 261 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 310 (608)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 57889999999999999999999999999999999999999999998874
No 67
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.26 E-value=1.1e-07 Score=94.20 Aligned_cols=489 Identities=13% Similarity=0.021 Sum_probs=248.2
Q ss_pred CCChHHHHHHHHHHhhcCCCCChhhHHHHHH---HhhccCCchhh-------------------hHHHH----HHHHhcC
Q 007329 73 NGSLEQALKYLDSMQELNICVDEDALVNLVR---LCEWKRGYDEG-------------------LYLHS----VVSKTMS 126 (608)
Q Consensus 73 ~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll~---~~~~~~~~~~a-------------------~~~~~----~~~~~~~ 126 (608)
.++.++++.-+......+...+..++..+-. .+...++.+++ ....- ++....+
T Consensus 240 ~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~~ 319 (799)
T KOG4162|consen 240 LSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRLKKF 319 (799)
T ss_pred CCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhhh
Confidence 4566777777766665555445544444433 22233444443 22211 1122223
Q ss_pred CcchhHHhHHHHHhhhcCChhhHHHHHcccCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHH
Q 007329 127 HLSVRLGNAFLSMFVKFGDLGHAWYVFGKMCD---RDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCV 203 (608)
Q Consensus 127 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 203 (608)
..|..+|..+.-++.++|+++.+-+.|++... .....|+.+-..|.-.|.-..|+.+++.-.....-++|...+-..
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 44556666666666666666666666666532 234456666666666666666666666544322112222222222
Q ss_pred HHHhc-CCCChhhHHHHHHHHHHhC--C--CCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCC
Q 007329 204 LRTCG-GVPDLKRGKEVHVHVIRFG--Y--EADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGE 278 (608)
Q Consensus 204 l~~~~-~~~~~~~a~~~~~~~~~~g--~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 278 (608)
-+.|. +.+.++++..+-.+.++.. . ......|..+.-+|...-.- .+.. --+...
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~------------a~~~--------seR~~~ 459 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQ------------ANLK--------SERDAL 459 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhc------------CCCh--------HHHHHH
Confidence 22232 3345555555544444411 0 01111222222222111000 0000 000111
Q ss_pred hhHHHHHHHHHHHCC-CCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHh
Q 007329 279 YMKGLMLFIMMREVL-VDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFS 357 (608)
Q Consensus 279 ~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 357 (608)
..++++.+++..+.+ -.|+...|..+ -++..++.+.|.+...+..+.+-..+...|..|.-.+...+++.+|+.+.+
T Consensus 460 h~kslqale~av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd 537 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVD 537 (799)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 334555555554432 22333333222 344556666666666666666545566666666666666666666666665
Q ss_pred hCCCC---ChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH--hCCCC
Q 007329 358 RMESK---DVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMR--TGLIS 432 (608)
Q Consensus 358 ~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~ 432 (608)
..... |......-+..-..-++.++++.....+...= -+...+...+. .| ...+....+.- .....
T Consensus 538 ~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~w--e~~~~~q~~~~----~g---~~~~lk~~l~la~~q~~~ 608 (799)
T KOG4162|consen 538 AALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALW--EAEYGVQQTLD----EG---KLLRLKAGLHLALSQPTD 608 (799)
T ss_pred HHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHH--HhhhhHhhhhh----hh---hhhhhhcccccCcccccc
Confidence 54431 11111111222223455566655555544310 00000000000 11 11111111110 01111
Q ss_pred chhHHHHHHHHh---HhcCCHHHHHHHHccCCCCC------cccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHH
Q 007329 433 YIIIANTLIDMY---SKCKCIDKALEVFHQIPDKN------VISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLV 503 (608)
Q Consensus 433 ~~~~~~~li~~~---~~~g~~~~A~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~ 503 (608)
...++..+.... .+.-..+..+..+.....|+ ...|......+.+.+..++|...+.+...-.+-....|.
T Consensus 609 a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~ 688 (799)
T KOG4162|consen 609 AISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYY 688 (799)
T ss_pred cchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHH
Confidence 112222221111 11111112211122222222 124556667788888999999888888744444666777
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHH--HHHhc----CCCHHHHHHHHHHHHhc
Q 007329 504 SILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWN--QFNSN----ERDVSAWNILLTGYAER 577 (608)
Q Consensus 504 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~--~~~~~----~~~~~~~~~l~~~~~~~ 577 (608)
.....+...|..++|.+.|..+...++. ++....++..++.+.|+..-|.. ++..+ +.+...|..+...+.+.
T Consensus 689 ~~G~~~~~~~~~~EA~~af~~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~ 767 (799)
T KOG4162|consen 689 LRGLLLEVKGQLEEAKEAFLVALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKL 767 (799)
T ss_pred HhhHHHHHHHhhHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Confidence 7777888889999999999988876665 56778889999999998777777 88777 55788999999999999
Q ss_pred CCHHHHHHHHHHHHHc
Q 007329 578 GQGALAEEFFRKMIDS 593 (608)
Q Consensus 578 g~~~~A~~~~~~m~~~ 593 (608)
|+.++|.+.|....+.
T Consensus 768 Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 768 GDSKQAAECFQAALQL 783 (799)
T ss_pred cchHHHHHHHHHHHhh
Confidence 9999999999988764
No 68
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.23 E-value=2.2e-07 Score=90.37 Aligned_cols=438 Identities=15% Similarity=0.122 Sum_probs=235.0
Q ss_pred ccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhhcCChhhHHHHHcccCC---CCcchHHHHHHHHHhcCChhHHHHH
Q 007329 107 WKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFGDLGHAWYVFGKMCD---RDLFSWNVLIGGYAKAGFFDEALSL 183 (608)
Q Consensus 107 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~ 183 (608)
..+++..+++..+.+++..++. ..+.....-.+...|+-++|......-.. .+.++|..+.-.+-...++++|++.
T Consensus 19 E~kQYkkgLK~~~~iL~k~~eH-geslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKKFPEH-GESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHHhHHHHHHHHHHhCCcc-chhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHH
Confidence 3556666666666666533321 12222222223445777777776665544 3456777777777777788888888
Q ss_pred HHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCC---
Q 007329 184 YQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPK--- 260 (608)
Q Consensus 184 ~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--- 260 (608)
|......+ +-|...+.-+ .-.-.+.|+++..........+
T Consensus 98 y~nAl~~~--~dN~qilrDl-----------------------------------slLQ~QmRd~~~~~~tr~~LLql~~ 140 (700)
T KOG1156|consen 98 YRNALKIE--KDNLQILRDL-----------------------------------SLLQIQMRDYEGYLETRNQLLQLRP 140 (700)
T ss_pred HHHHHhcC--CCcHHHHHHH-----------------------------------HHHHHHHHhhhhHHHHHHHHHHhhh
Confidence 88777543 2232333222 2222333333333322222221
Q ss_pred CCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCChhHHHHHHH------HHhhcCChhhHHHHHHHHHHhCCCCCc
Q 007329 261 RDRISWNAMISGYFENGEYMKGLMLFIMMREVL-VDPDFMTLSSVIS------ASELVGDEKLGREVHGYVIKMGFSDDV 333 (608)
Q Consensus 261 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~------~~~~~~~~~~a~~~~~~~~~~~~~~~~ 333 (608)
.....|..++.++.-.|+...|..++++..+.. -.|+...|..... .....|..+.|.+.+..-... +....
T Consensus 141 ~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkl 219 (700)
T KOG1156|consen 141 SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKL 219 (700)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHH
Confidence 233456666666666677777777777666543 2345444433322 234455666666555443322 11122
Q ss_pred ccchHHHHHHHhcCChHHHHHHHhhCCC--CChhhHHHHHH-HHHcCCCchHHH-HHHHHHHHCCCCCCHHHHHHH-HHH
Q 007329 334 SVCNPLIKMYLSFGNREEGEKVFSRMES--KDVVSWTTMIS-CYEGSVLPDKAV-ETYQMMEAEGSMPDEITIASV-LSA 408 (608)
Q Consensus 334 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~-~~~~~~~~~~a~-~~~~~m~~~g~~p~~~t~~~l-l~~ 408 (608)
..-..-...+.+.+++++|..++..+.. ||...|...+. ++.+-.+.-++. .+|....+.- |.......+ +..
T Consensus 220 a~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y--~r~e~p~Rlplsv 297 (700)
T KOG1156|consen 220 AFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY--PRHECPRRLPLSV 297 (700)
T ss_pred HHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC--cccccchhccHHH
Confidence 2223445666777888888888887766 55555554443 333333333333 5555544431 111110000 111
Q ss_pred HHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHH----HHHHHccCC--------------CCCcccHH-
Q 007329 409 CACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDK----ALEVFHQIP--------------DKNVISWT- 469 (608)
Q Consensus 409 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~--------------~~~~~~~~- 469 (608)
.....-.+..-.++....+.|+++- +..+...|-.-...+- +..+...+. .|....|+
T Consensus 298 l~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~ 374 (700)
T KOG1156|consen 298 LNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTL 374 (700)
T ss_pred hCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHH
Confidence 1111222333445555556665432 2223333322111110 111111111 23333343
Q ss_pred -HHHHHHHhCCCchHHHHHHHHhHhCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhc
Q 007329 470 -SIILGLRLNNRSFEALIFFRKMMLNLKPNSV-TLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRC 547 (608)
Q Consensus 470 -~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 547 (608)
.++..+-..|+++.|..+++... +..|+.+ -|..-.+.+...|++++|..+++++.+.+.. |..+-..-+.-..++
T Consensus 375 y~laqh~D~~g~~~~A~~yId~AI-dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~a-DR~INsKcAKYmLrA 452 (700)
T KOG1156|consen 375 YFLAQHYDKLGDYEVALEYIDLAI-DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTA-DRAINSKCAKYMLRA 452 (700)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHh-ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccch-hHHHHHHHHHHHHHc
Confidence 46777888999999999999988 5555544 5666678888999999999999999887644 666655667777889
Q ss_pred CCHHHHHHHHHhc-CC--CHH--------HHHHH--HHHHHhcCCHHHHHHHHHHH
Q 007329 548 GRMKPAWNQFNSN-ER--DVS--------AWNIL--LTGYAERGQGALAEEFFRKM 590 (608)
Q Consensus 548 g~~~~A~~~~~~~-~~--~~~--------~~~~l--~~~~~~~g~~~~A~~~~~~m 590 (608)
++.++|.++.... +. +.+ .|-.+ ..+|.+.|++.+|+.-|...
T Consensus 453 n~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 453 NEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred cccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 9999999998887 11 211 34333 44578888888777655544
No 69
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.22 E-value=3e-09 Score=97.55 Aligned_cols=193 Identities=10% Similarity=-0.060 Sum_probs=133.8
Q ss_pred hhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHh
Q 007329 365 VSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMY 444 (608)
Q Consensus 365 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 444 (608)
..+..+...+...|++++|...+++..+.. +.+...+..+...+...|+++.|.+.++...+.. +.+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 344555566666677777777776666543 2234555666666777777777777777666654 33445566666677
Q ss_pred HhcCCHHHHHHHHccCCC-----CCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHH
Q 007329 445 SKCKCIDKALEVFHQIPD-----KNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGK 519 (608)
Q Consensus 445 ~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 519 (608)
...|++++|.+.+++..+ .....+..+...+...|++++|...+++.....+.+...+..+...+...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 777777777777776653 123456667777888888888888888887444445667888888888889999999
Q ss_pred HHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 520 EIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 520 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
..++++.+.. ..+...+..++..+...|+.++|..+++.+
T Consensus 190 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 190 AYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9988888763 335566667778888889999988877664
No 70
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.21 E-value=1.3e-08 Score=99.88 Aligned_cols=198 Identities=17% Similarity=0.146 Sum_probs=114.8
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHC-----CC-CCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 007329 369 TMISCYEGSVLPDKAVETYQMMEAE-----GS-MPD-EITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLI 441 (608)
Q Consensus 369 ~li~~~~~~~~~~~a~~~~~~m~~~-----g~-~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 441 (608)
.+...|...+++++|..+|+++... |- .|. ..++..|...|.+.|++++|...++.+.+---+.
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~--------- 316 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL--------- 316 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh---------
Confidence 3555677777777777777776542 21 111 2356666667788888887777766544310000
Q ss_pred HHhHhcCCHHHHHHHHccCCCCCc-ccHHHHHHHHHhCCCchHHHHHHHHhH----hCCCCC----HHHHHHHHHHHhcc
Q 007329 442 DMYSKCKCIDKALEVFHQIPDKNV-ISWTSIILGLRLNNRSFEALIFFRKMM----LNLKPN----SVTLVSILSACARI 512 (608)
Q Consensus 442 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~----~~~~p~----~~~~~~ll~~~~~~ 512 (608)
+. ...+.+ ..++.++..+...+++++|..++++.. ....++ ..+++.|...|...
T Consensus 317 --~~--------------~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~ 380 (508)
T KOG1840|consen 317 --LG--------------ASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKM 380 (508)
T ss_pred --hc--------------cChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHh
Confidence 00 000111 112333444444555555555555443 112222 34677777777777
Q ss_pred CcHHHHHHHHHHHHHh----CCC--C-CccHHHHHHHHhHhcCCHHHHHHHHHhc-------CC---C-HHHHHHHHHHH
Q 007329 513 GALMCGKEIHAHALRI----GVA--F-DGFLPNALLDMYVRCGRMKPAWNQFNSN-------ER---D-VSAWNILLTGY 574 (608)
Q Consensus 513 ~~~~~a~~~~~~~~~~----~~~--p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~---~-~~~~~~l~~~~ 574 (608)
|++++|.++++.++.. +.. + ....++.|...|.+.+++++|.++|.+. .| + ..+|..|...|
T Consensus 381 gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y 460 (508)
T KOG1840|consen 381 GKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALY 460 (508)
T ss_pred cchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH
Confidence 7777777777766532 121 1 1344566777777777777777777654 22 2 34788888889
Q ss_pred HhcCCHHHHHHHHHHHH
Q 007329 575 AERGQGALAEEFFRKMI 591 (608)
Q Consensus 575 ~~~g~~~~A~~~~~~m~ 591 (608)
...|+++.|.++.+...
T Consensus 461 ~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 461 RAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHcccHHHHHHHHHHHH
Confidence 99999999988887765
No 71
>PRK12370 invasion protein regulator; Provisional
Probab=99.20 E-value=3.2e-09 Score=109.44 Aligned_cols=209 Identities=10% Similarity=-0.047 Sum_probs=143.2
Q ss_pred CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHH
Q 007329 378 VLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVF 457 (608)
Q Consensus 378 ~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 457 (608)
+++++|...+++..+.. +-+...+..+...+...|++++|...++.+.+.+ +.+...+..+...+...|++++|...+
T Consensus 318 ~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 318 NAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred hHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 44678888888888764 2255667777777788888888888888888776 455666777788888888888888888
Q ss_pred ccCCC--CCc-ccHHHHHHHHHhCCCchHHHHHHHHhHhCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCC
Q 007329 458 HQIPD--KNV-ISWTSIILGLRLNNRSFEALIFFRKMMLNLKP-NSVTLVSILSACARIGALMCGKEIHAHALRIGVAFD 533 (608)
Q Consensus 458 ~~~~~--~~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~ 533 (608)
++..+ |+. ..+..++..+...|++++|+..+++.....+| +...+..+..++...|++++|...++++....+. +
T Consensus 396 ~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~ 474 (553)
T PRK12370 396 NECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-G 474 (553)
T ss_pred HHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-h
Confidence 88764 332 22334444566678889999998888744445 4445667777888889999999998877554322 3
Q ss_pred ccHHHHHHHHhHhcCCHHHHHHHHHhc------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 007329 534 GFLPNALLDMYVRCGRMKPAWNQFNSN------ERDVSAWNILLTGYAERGQGALAEEFFRKMIDSK 594 (608)
Q Consensus 534 ~~~~~~l~~~~~~~g~~~~A~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 594 (608)
....+.+...|...| ++|...++.+ .+...-+ +-..|.-.|+.+.+..+ +++.+.|
T Consensus 475 ~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 475 LIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 344455666777777 4777766666 2222333 33445557777777666 8887764
No 72
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.19 E-value=6.3e-07 Score=87.24 Aligned_cols=448 Identities=11% Similarity=0.017 Sum_probs=273.7
Q ss_pred HHHHHhCCChHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhhcCCh
Q 007329 67 LNELCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFGDL 146 (608)
Q Consensus 67 l~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 146 (608)
+.-+...+++...+++.+.+.. +..-...+....--.+...|+-++|.......++.++. +.+-|..+.-.+....++
T Consensus 14 ~lk~yE~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y 91 (700)
T KOG1156|consen 14 ALKCYETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKY 91 (700)
T ss_pred HHHHHHHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhH
Confidence 3445567889999999998887 44334555554444556688999998887766664433 445567666666666899
Q ss_pred hhHHHHHcccC---CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHH
Q 007329 147 GHAWYVFGKMC---DRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHV 223 (608)
Q Consensus 147 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 223 (608)
++|++.|.... +.|...|..+--.-++.|+++..........+.. +-....|.....+..-.|+...|..++++.
T Consensus 92 ~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~--~~~ra~w~~~Avs~~L~g~y~~A~~il~ef 169 (700)
T KOG1156|consen 92 DEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR--PSQRASWIGFAVAQHLLGEYKMALEILEEF 169 (700)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998773 3566677776666678888888888888877653 445667778888888889999999999998
Q ss_pred HHhCC-CCchhHHHHHH------HHHHhcCCHHHHHHHHccCCCC--CHh-HHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 007329 224 IRFGY-EADVDVVNALI------TMYVKCGDLVRARLVFDGMPKR--DRI-SWNAMISGYFENGEYMKGLMLFIMMREVL 293 (608)
Q Consensus 224 ~~~g~-~~~~~~~~~li------~~~~~~g~~~~A~~~~~~~~~~--~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 293 (608)
.+... .|+...+.... ....+.|..++|.+.+...... |-. .-..-...+.+.++.++|..++..+...
T Consensus 170 ~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r- 248 (700)
T KOG1156|consen 170 EKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER- 248 (700)
T ss_pred HHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh-
Confidence 87652 45555444332 3345678888888888776554 222 3334566788899999999999999886
Q ss_pred CCCChhHHHHHHHHHh-hcCC-hhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCC-hHHHHHHHhhCCCC-ChhhHHH
Q 007329 294 VDPDFMTLSSVISASE-LVGD-EKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGN-REEGEKVFSRMESK-DVVSWTT 369 (608)
Q Consensus 294 ~~p~~~~~~~ll~~~~-~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~-~~~~~~~ 369 (608)
.||...|...+..+. +..+ .+....+|....+. .|....-..+--......+ .+...+++..+.+. -+.++..
T Consensus 249 -nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~d 325 (700)
T KOG1156|consen 249 -NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKD 325 (700)
T ss_pred -CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhh
Confidence 577777666555443 3333 33333566555433 1111111111001111111 22223333333322 1223333
Q ss_pred HHHHHHcCCCchHHHHHHHHHHH----CC----------CCCCH--HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCc
Q 007329 370 MISCYEGSVLPDKAVETYQMMEA----EG----------SMPDE--ITIASVLSACACLGNLDLGIKLHQLAMRTGLISY 433 (608)
Q Consensus 370 li~~~~~~~~~~~a~~~~~~m~~----~g----------~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 433 (608)
+...|-.....+-..++...+.. .| -.|.. .|+-.++..+-+.|+++.|..+++..+++- +.-
T Consensus 326 l~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHT-PTl 404 (700)
T KOG1156|consen 326 LRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHT-PTL 404 (700)
T ss_pred hHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC-chH
Confidence 33333322222211112211111 11 03333 355567788888999999999998887653 333
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHhH-hCCCCCHHHHHH-----
Q 007329 434 IIIANTLIDMYSKCKCIDKALEVFHQIPD---KNVISWTSIILGLRLNNRSFEALIFFRKMM-LNLKPNSVTLVS----- 504 (608)
Q Consensus 434 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~-~~~~p~~~~~~~----- 504 (608)
+..|..-.+++...|++++|...+++..+ +|...-.--.....+.++.++|.++..... +|. +......
T Consensus 405 iEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcm 482 (700)
T KOG1156|consen 405 IELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCM 482 (700)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhH
Confidence 45566666788888999999999988775 333333345666778888888888888777 443 2221111
Q ss_pred -----HHHHHhccCcHHHHHHHHHHH
Q 007329 505 -----ILSACARIGALMCGKEIHAHA 525 (608)
Q Consensus 505 -----ll~~~~~~~~~~~a~~~~~~~ 525 (608)
=..+|.+.|++..|++-+..+
T Consensus 483 Wf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 483 WFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 124566677776666544433
No 73
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.19 E-value=2.2e-09 Score=94.94 Aligned_cols=229 Identities=14% Similarity=0.052 Sum_probs=180.3
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhH
Q 007329 366 SWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYS 445 (608)
Q Consensus 366 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 445 (608)
.-+.+.++|.+.|.+.+|.+.|+.-... .|-..||..|-.+|.+..+...|+.++.+..+.- +.++....-....+.
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHH
Confidence 3466778888999999999888887776 5667788888888999999999988888777643 445555556677777
Q ss_pred hcCCHHHHHHHHccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 007329 446 KCKCIDKALEVFHQIPD---KNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIH 522 (608)
Q Consensus 446 ~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 522 (608)
..++.++|.++++...+ .++.....+...|.-.++++-|+.+|++++.--.-++..|+.+.-+|...++++-++.-|
T Consensus 302 am~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHH
Confidence 88889999999887764 345556666778888899999999999998444457778888999999999999999999
Q ss_pred HHHHHhCCCCC--ccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 007329 523 AHALRIGVAFD--GFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKMIDSKGN 596 (608)
Q Consensus 523 ~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 596 (608)
+++...--.|+ ..+|-.|.......||+..|.+.|+-+ ..+...++.|.-.-.+.|+.++|..+++..... .
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~--~ 459 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV--M 459 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh--C
Confidence 98887655554 345666777788889999999999887 335678898888888999999999999988764 5
Q ss_pred CCc
Q 007329 597 WRK 599 (608)
Q Consensus 597 p~~ 599 (608)
|+.
T Consensus 460 P~m 462 (478)
T KOG1129|consen 460 PDM 462 (478)
T ss_pred ccc
Confidence 554
No 74
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=3.5e-07 Score=92.97 Aligned_cols=347 Identities=13% Similarity=0.098 Sum_probs=217.3
Q ss_pred CcchHHHHHHHhcCCCChhhHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHH
Q 007329 196 DVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFG--YEADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGY 273 (608)
Q Consensus 196 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 273 (608)
|+...+..++++...+-..+-.+++++++-.. +.-+...-|.|+-...+. +.....+..+++..-|.. .+....
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa~---~ia~ia 1058 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDAP---DIAEIA 1058 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCch---hHHHHH
Confidence 44455566666666666666666666655321 122233334444433333 344455555555433221 133445
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHH
Q 007329 274 FENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGE 353 (608)
Q Consensus 274 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 353 (608)
..++-+++|..+|++.. .+......++. ..+..+.|.++-+.. ..+.+|..+..+-.+.|.+.+|.
T Consensus 1059 i~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v~dAi 1124 (1666)
T KOG0985|consen 1059 IENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLVKDAI 1124 (1666)
T ss_pred hhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCchHHHH
Confidence 55667778888877653 24445555554 234555555554432 24567788888888888888887
Q ss_pred HHHhhCCCCChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCc
Q 007329 354 KVFSRMESKDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISY 433 (608)
Q Consensus 354 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 433 (608)
+-|-+. .|+..|..++....+.|.|++-.+.+....++.-.|... +.|+-+|++.+++.+.++++. -|+
T Consensus 1125 eSyika--dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~-------gpN 1193 (1666)
T KOG0985|consen 1125 ESYIKA--DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA-------GPN 1193 (1666)
T ss_pred HHHHhc--CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-------CCC
Confidence 766544 455667778888888888888888777766665555544 356777888777766655542 566
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccC
Q 007329 434 IIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIG 513 (608)
Q Consensus 434 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~ 513 (608)
......+.+-|...|.++.|.-+|.. +..|.-|...+...|++..|...-++. .+..||..+-.+|...+
T Consensus 1194 ~A~i~~vGdrcf~~~~y~aAkl~y~~-----vSN~a~La~TLV~LgeyQ~AVD~aRKA-----ns~ktWK~VcfaCvd~~ 1263 (1666)
T KOG0985|consen 1194 VANIQQVGDRCFEEKMYEAAKLLYSN-----VSNFAKLASTLVYLGEYQGAVDAARKA-----NSTKTWKEVCFACVDKE 1263 (1666)
T ss_pred chhHHHHhHHHhhhhhhHHHHHHHHH-----hhhHHHHHHHHHHHHHHHHHHHHhhhc-----cchhHHHHHHHHHhchh
Confidence 66667777777778888888777754 446777888888888888888777665 36678888888898877
Q ss_pred cHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007329 514 ALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEEFF 587 (608)
Q Consensus 514 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~ 587 (608)
.+.-| ++.-.++.....-...|+..|...|-+++-..+++.. ....-.|+.|.-.|.+- ++++-.+-+
T Consensus 1264 EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl 1335 (1666)
T KOG0985|consen 1264 EFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHL 1335 (1666)
T ss_pred hhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHH
Confidence 66544 2333333344555667899999999999999988876 23344555555444443 344433333
No 75
>PRK12370 invasion protein regulator; Provisional
Probab=99.18 E-value=4.1e-09 Score=108.67 Aligned_cols=262 Identities=8% Similarity=-0.071 Sum_probs=169.6
Q ss_pred CChhhHHHHHHHhh-----ccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhh---------hcCChhhHHHHHcccCC
Q 007329 93 VDEDALVNLVRLCE-----WKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFV---------KFGDLGHAWYVFGKMCD 158 (608)
Q Consensus 93 ~~~~~~~~ll~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~ 158 (608)
.+...|...+++.. ..+++++|..+++..++..+. +...|..+..++. ..+++++|...+++..+
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 44455544444321 234678888888888877654 2344444444333 23457888888888744
Q ss_pred ---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCchhHH
Q 007329 159 ---RDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVV 235 (608)
Q Consensus 159 ---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 235 (608)
.+..+|..+...+...|++++|...|++..+.+ +.+...+..+...+...|++++|...++..++.... +...+
T Consensus 333 ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~ 409 (553)
T PRK12370 333 LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAG 409 (553)
T ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhH
Confidence 355677777778888899999999999888754 344556777778888889999999999988887533 22233
Q ss_pred HHHHHHHHhcCCHHHHHHHHccCCC---C-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhH-HHHHHHHHhh
Q 007329 236 NALITMYVKCGDLVRARLVFDGMPK---R-DRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMT-LSSVISASEL 310 (608)
Q Consensus 236 ~~li~~~~~~g~~~~A~~~~~~~~~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~ 310 (608)
..++..+...|++++|...+++... + ++..+..+...+...|+.++|...+.++... .|+..+ .+.+...+..
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhc
Confidence 3444456667888989888877642 2 4556777788888899999999998887553 344333 3334445566
Q ss_pred cCChhhHHHHHHHHHHhC-CCCCcccchHHHHHHHhcCChHHHHHHHhhCCCCChh
Q 007329 311 VGDEKLGREVHGYVIKMG-FSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVV 365 (608)
Q Consensus 311 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 365 (608)
.| +.+...++.+.+.. ..+... ..+-..|.-.|+-+.+..+ +++.+.+..
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~-~~~~~~~~~ 538 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNP--GLLPLVLVAHGEAIAEKMW-NKFKNEDNI 538 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCc--hHHHHHHHHHhhhHHHHHH-HHhhccchH
Confidence 66 46777666665432 112111 2244555666777777666 777664433
No 76
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.17 E-value=8.7e-07 Score=88.35 Aligned_cols=29 Identities=10% Similarity=0.111 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 565 SAWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 565 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
..|..||..+....++..|-+.+++|...
T Consensus 1331 ~~~a~lie~~v~~k~y~~AyRal~el~~k 1359 (1416)
T KOG3617|consen 1331 RLFALLIEDHVSRKNYKPAYRALTELQKK 1359 (1416)
T ss_pred HHHHHHHHHHHhhhhccHHHHHHHHHhhc
Confidence 47889999999999999999999999876
No 77
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.14 E-value=1.4e-09 Score=96.17 Aligned_cols=220 Identities=15% Similarity=0.135 Sum_probs=169.0
Q ss_pred hHHHHHHHhcCChHHHHHHHhhCCC--CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHccC
Q 007329 337 NPLIKMYLSFGNREEGEKVFSRMES--KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIA-SVLSACACLG 413 (608)
Q Consensus 337 ~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~~ 413 (608)
+.+..+|.+.|-+.+|.+.|+...+ |-+.||-.|-+.|.+..+++.|+.++.+-.+. .|-.+||. -..+.+...+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHH
Confidence 4577788888888888888877654 67778888888888888888888888887765 45556653 4556677778
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHH
Q 007329 414 NLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPD---KNVISWTSIILGLRLNNRSFEALIFFRK 490 (608)
Q Consensus 414 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 490 (608)
+.+.+.++++...+.. +.+++...++...|.-.++.+-|++.+.++.+ .++..|+.+.-+|.-.+++|-++..|++
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 8888888888887765 55666666677777778888888888887664 5667788888888888888888888888
Q ss_pred hH-hCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 491 MM-LNLKPN--SVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 491 m~-~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
.+ ..-.|+ ...|..+.......|++.-|.+.|+-....+.. +...++.|.-.-.+.|++++|..++..+
T Consensus 384 Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 384 ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 87 222233 346777777778889999999999888876655 5677888888888899999999988877
No 78
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=4.2e-06 Score=85.50 Aligned_cols=119 Identities=13% Similarity=0.054 Sum_probs=94.9
Q ss_pred cccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHh
Q 007329 465 VISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMY 544 (608)
Q Consensus 465 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 544 (608)
+..|..+..+-.+.|...+|++-|-+. .|+..|.-++..+.+.|.+++-.+++.++++..-.|... +.||-+|
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~Ay 1176 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAY 1176 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHH
Confidence 457999999999999999999888765 477789999999999999999999999999887776655 5799999
Q ss_pred HhcCCHHHHHHHHHhc------------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007329 545 VRCGRMKPAWNQFNSN------------------------ERDVSAWNILLTGYAERGQGALAEEFFRKM 590 (608)
Q Consensus 545 ~~~g~~~~A~~~~~~~------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 590 (608)
++.+++.+-.+.+..- -.+...|..|...+...|+++.|.+..++.
T Consensus 1177 Akt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999877765321 113445667777777888888877766654
No 79
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.12 E-value=2.1e-07 Score=92.71 Aligned_cols=251 Identities=14% Similarity=0.062 Sum_probs=119.0
Q ss_pred HHhhhcCChhhHHHHHcccCC--CCcc-hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhc------
Q 007329 138 SMFVKFGDLGHAWYVFGKMCD--RDLF-SWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCG------ 208 (608)
Q Consensus 138 ~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~------ 208 (608)
..+...|++++|++.++.-.. .|.. ........+.+.|+.++|..+|..+.+.+ |+...|...+..+.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN---Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN---PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHhhhccc
Confidence 445677888888888776533 3433 34555667777888888888888887754 55555544443333
Q ss_pred CCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH-HHHHHHccCCCCCH-hHHHHHHHHHHhcCChhHHHHHH
Q 007329 209 GVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLV-RARLVFDGMPKRDR-ISWNAMISGYFENGEYMKGLMLF 286 (608)
Q Consensus 209 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~ 286 (608)
...+.+...++++++.+.- |.......+.-.+.....+. .+...+..+..+.+ .+++.+-..|....+..-..+++
T Consensus 89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHH
Confidence 1224556666666665542 22222222211111111221 22233333333332 34444444444333333334444
Q ss_pred HHHHHC----C----------CCCCh--hHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChH
Q 007329 287 IMMREV----L----------VDPDF--MTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNRE 350 (608)
Q Consensus 287 ~~m~~~----~----------~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 350 (608)
...... + -.|+. .++..+...+...|+.++|.++++..++.. +..+..|..-...+-..|+++
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHH
Confidence 443321 0 01122 122333344445555555555555555442 222344444455555555555
Q ss_pred HHHHHHhhCCC---CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCC
Q 007329 351 EGEKVFSRMES---KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEG 394 (608)
Q Consensus 351 ~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 394 (608)
+|.+.++.... .|-..-+..+..+.+.|+.++|.+++......+
T Consensus 246 ~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 246 EAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 55555554443 233333334444555555555555555554443
No 80
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.10 E-value=8.7e-07 Score=87.24 Aligned_cols=459 Identities=15% Similarity=0.110 Sum_probs=209.3
Q ss_pred HHHHhCCChHHHHHHHHHHhhcCCCCChhh-HHHHHHHhhccCCchhhhHHHHHHHH--------------------hcC
Q 007329 68 NELCLNGSLEQALKYLDSMQELNICVDEDA-LVNLVRLCEWKRGYDEGLYLHSVVSK--------------------TMS 126 (608)
Q Consensus 68 ~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~--------------------~~~ 126 (608)
.+-...|+++.|..+++.+. ..|+..+ |..+...-...|++--|.+.|..+-+ .|-
T Consensus 452 gaaid~~df~ra~afles~~---~~~da~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~gg 528 (1636)
T KOG3616|consen 452 GAAIDDGDFDRATAFLESLE---MGPDAEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGG 528 (1636)
T ss_pred ccccccCchHHHHHHHHhhc---cCccHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCC
Confidence 34567899999999998864 2366554 44444444445554444444432211 111
Q ss_pred -CcchhHHhHHHHHhhhcCChhhHHHHHcccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHH
Q 007329 127 -HLSVRLGNAFLSMFVKFGDLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLR 205 (608)
Q Consensus 127 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~ 205 (608)
..+.+-..+++.. -..++.+|..+|-+- . .-..-|..|....++++++.+-+. .| .+.-...-.+-++
T Consensus 529 dgt~fykvra~lai--l~kkfk~ae~ifleq--n---~te~aigmy~~lhkwde~i~lae~---~~-~p~~eklk~sy~q 597 (1636)
T KOG3616|consen 529 DGTDFYKVRAMLAI--LEKKFKEAEMIFLEQ--N---ATEEAIGMYQELHKWDEAIALAEA---KG-HPALEKLKRSYLQ 597 (1636)
T ss_pred CCchHHHHHHHHHH--HHhhhhHHHHHHHhc--c---cHHHHHHHHHHHHhHHHHHHHHHh---cC-ChHHHHHHHHHHH
Confidence 1111111222222 223455565555321 1 112345556666667777665543 22 2222223334455
Q ss_pred HhcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcc--CCCCCHhHHHHHHHHHHhcCChhHHH
Q 007329 206 TCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDG--MPKRDRISWNAMISGYFENGEYMKGL 283 (608)
Q Consensus 206 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~ 283 (608)
++...|+-+.|-++-+ +..--.+.|..|.+.|....|.+.... ....|......+..++.+..-+++|-
T Consensus 598 ~l~dt~qd~ka~elk~---------sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkag 668 (1636)
T KOG3616|consen 598 ALMDTGQDEKAAELKE---------SDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAG 668 (1636)
T ss_pred HHHhcCchhhhhhhcc---------ccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhh
Confidence 6666666555544321 111123567788888888777765432 12235555666666666666677777
Q ss_pred HHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccc-hHHHHHHHhcCChHHHHHHHhhCCCC
Q 007329 284 MLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVC-NPLIKMYLSFGNREEGEKVFSRMESK 362 (608)
Q Consensus 284 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~ 362 (608)
++|+++.. +...+.++.+..-+-+|.++-+.. ++..+... ..-...+...|+++.|..-|-+..
T Consensus 669 dlfeki~d---------~dkale~fkkgdaf~kaielarfa----fp~evv~lee~wg~hl~~~~q~daainhfiea~-- 733 (1636)
T KOG3616|consen 669 DLFEKIHD---------FDKALECFKKGDAFGKAIELARFA----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN-- 733 (1636)
T ss_pred hHHHHhhC---------HHHHHHHHHcccHHHHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh--
Confidence 77776643 112222232222233333332211 01111100 111222333344444443332211
Q ss_pred ChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 007329 363 DVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLID 442 (608)
Q Consensus 363 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 442 (608)
..-..+.+-....+|.+|+.+++.++... .-..-|..+...|+..|+++.|+++|.+. ..++-.|.
T Consensus 734 ---~~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~ 799 (1636)
T KOG3616|consen 734 ---CLIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAID 799 (1636)
T ss_pred ---hHHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHH
Confidence 00111233444555666666666555542 12233455555666666666666655431 12344455
Q ss_pred HhHhcCCHHHHHHHHccCCCCCc--ccHHHHHHHHHhCCCchHHHHHHHHhH----------------------hCCCCC
Q 007329 443 MYSKCKCIDKALEVFHQIPDKNV--ISWTSIILGLRLNNRSFEALIFFRKMM----------------------LNLKPN 498 (608)
Q Consensus 443 ~~~~~g~~~~A~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~m~----------------------~~~~p~ 498 (608)
+|.+.|++++|.++-.+...|.. ..|-+-..-+-++|++.+|.++|-.+. ....|+
T Consensus 800 my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d 879 (1636)
T KOG3616|consen 800 MYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGD 879 (1636)
T ss_pred HHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChh
Confidence 56666666666666555554322 233333333444455444444433221 011111
Q ss_pred --HHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc-CCCHHHHHHHHHHHH
Q 007329 499 --SVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN-ERDVSAWNILLTGYA 575 (608)
Q Consensus 499 --~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~l~~~~~ 575 (608)
..|...+..-+...|++..|..-|-++- -|.+-+++|-..+-|++|..+-+.- ..|..-....+++-.
T Consensus 880 ~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaks 950 (1636)
T KOG3616|consen 880 HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKS 950 (1636)
T ss_pred hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHh
Confidence 2233444444555555555554443322 2334455555566666665555443 333333333333333
Q ss_pred hcCCHHHHHHHHHH
Q 007329 576 ERGQGALAEEFFRK 589 (608)
Q Consensus 576 ~~g~~~~A~~~~~~ 589 (608)
--| +.|..++++
T Consensus 951 igg--daavkllnk 962 (1636)
T KOG3616|consen 951 IGG--DAAVKLLNK 962 (1636)
T ss_pred hCc--HHHHHHHHh
Confidence 333 334555443
No 81
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.10 E-value=1.2e-07 Score=94.56 Aligned_cols=124 Identities=16% Similarity=0.173 Sum_probs=93.3
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhc
Q 007329 468 WTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRC 547 (608)
Q Consensus 468 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 547 (608)
+..+...|...|++++|++++++.+..-+-....|..-.+.+-+.|++++|.+.++.+++.+.. |..+-+-.+..+.|+
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa 275 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRA 275 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHC
Confidence 3445666778888888888888888333334667778888888899999999999988888776 777777788888899
Q ss_pred CCHHHHHHHHHhc-CCC----------HHHH--HHHHHHHHhcCCHHHHHHHHHHHHH
Q 007329 548 GRMKPAWNQFNSN-ERD----------VSAW--NILLTGYAERGQGALAEEFFRKMID 592 (608)
Q Consensus 548 g~~~~A~~~~~~~-~~~----------~~~~--~~l~~~~~~~g~~~~A~~~~~~m~~ 592 (608)
|++++|.+++... .++ ...| .....+|.+.|++..|+..|....+
T Consensus 276 ~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 276 GRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred CCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999998888877 322 1234 3566778888988888877665543
No 82
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.03 E-value=1.5e-07 Score=79.79 Aligned_cols=195 Identities=15% Similarity=0.031 Sum_probs=111.4
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCC---CCCcccHHHHHHHHHhC
Q 007329 402 IASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIP---DKNVISWTSIILGLRLN 478 (608)
Q Consensus 402 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~ 478 (608)
...|.-.|...|+...|..-+++.++.. +.+...+..+...|.+.|+.+.|.+.|++.. ..+-...|....-+|..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC
Confidence 3344445555556655655555555554 3344455555555556666666666555443 22334555555566666
Q ss_pred CCchHHHHHHHHhH--hCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHH
Q 007329 479 NRSFEALIFFRKMM--LNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQ 556 (608)
Q Consensus 479 ~~~~~A~~~~~~m~--~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 556 (608)
|++++|...|++.. -...--..||..+..+..+.|+.+.|...+++.++..+. .+.....+.....+.|++..|...
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHH
Confidence 66666666666665 112223445666666666666666666666666665554 334445566666666777777666
Q ss_pred HHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 557 FNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 557 ~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
+++. .+...+.-..|..-.+.|+.+.|-++=.++.+. .|...
T Consensus 196 ~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~ 241 (250)
T COG3063 196 LERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSE 241 (250)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcH
Confidence 6665 445555555556666667766666665555543 44443
No 83
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.02 E-value=7.8e-08 Score=94.57 Aligned_cols=229 Identities=16% Similarity=0.241 Sum_probs=135.4
Q ss_pred chHHHHHHHhcCCCChhhHHHHHHHHHHh-----C-CCCchh-HHHHHHHHHHhcCCHHHHHHHHccCCC-------C--
Q 007329 198 YTFPCVLRTCGGVPDLKRGKEVHVHVIRF-----G-YEADVD-VVNALITMYVKCGDLVRARLVFDGMPK-------R-- 261 (608)
Q Consensus 198 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~-------~-- 261 (608)
.+...+...|...|+++.|..+++..++. | ..|.+. ..+.+...|...+++++|..+|+++.. +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34555667777777777777777766654 2 122222 233455667777777777777766542 1
Q ss_pred --CHhHHHHHHHHHHhcCChhHHHHHHHHHHHC-----CCC-CChh-HHHHHHHHHhhcCChhhHHHHHHHHHHhC---C
Q 007329 262 --DRISWNAMISGYFENGEYMKGLMLFIMMREV-----LVD-PDFM-TLSSVISASELVGDEKLGREVHGYVIKMG---F 329 (608)
Q Consensus 262 --~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~~-p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~ 329 (608)
-..+++.|...|.+.|++++|...+++..+- |.. |... -++.+...++..+++++|..+++...+.- .
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 2335666777778888877777766654321 111 2222 24555566777777888877777654331 1
Q ss_pred CCC----cccchHHHHHHHhcCChHHHHHHHhhCCC-------C----ChhhHHHHHHHHHcCCCchHHHHHHHHHHH--
Q 007329 330 SDD----VSVCNPLIKMYLSFGNREEGEKVFSRMES-------K----DVVSWTTMISCYEGSVLPDKAVETYQMMEA-- 392 (608)
Q Consensus 330 ~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-- 392 (608)
.++ ..+++.|...|...|++++|.+++++... . ....++.|...|.+.+++++|.++|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 111 34566777777777777777777766543 0 123455566666777777767666655332
Q ss_pred --CCC-CCC-HHHHHHHHHHHHccCChHHHHHHHHHHH
Q 007329 393 --EGS-MPD-EITIASVLSACACLGNLDLGIKLHQLAM 426 (608)
Q Consensus 393 --~g~-~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 426 (608)
.|. .|+ ..+|..|...|...|+++.|.++.+.+.
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 221 122 3456667777777777777777666554
No 84
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=9.8e-06 Score=74.81 Aligned_cols=261 Identities=12% Similarity=0.021 Sum_probs=128.9
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhH-HHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHH
Q 007329 262 DRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMT-LSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLI 340 (608)
Q Consensus 262 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 340 (608)
++.....+.+.+...|+.++|+..|++.... .|+..+ ...-.-.+.+.|+.+....+...+.... .-....|..-.
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~ 307 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA 307 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence 5666667777777777777777777665542 222221 0111112234555555555554444321 11222233333
Q ss_pred HHHHhcCChHHHHHHHhhCCCCCh---hhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHH
Q 007329 341 KMYLSFGNREEGEKVFSRMESKDV---VSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDL 417 (608)
Q Consensus 341 ~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 417 (608)
......++++.|+.+-++....+. ..|-.-...+...|+.++|.-.|...+... +-+...|..|+..|...|.+.+
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHH
Confidence 334444555666555555444222 222222234555566666666665555431 1234556666666666666555
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHc-cCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCC
Q 007329 418 GIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFH-QIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLK 496 (608)
Q Consensus 418 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~ 496 (608)
|...-....+.- +.+..+ +.+|. ...-+|+ .--++|..++++.+ .+.
T Consensus 387 A~~~An~~~~~~-~~sA~~-----------------LtL~g~~V~~~dp-------------~~rEKAKkf~ek~L-~~~ 434 (564)
T KOG1174|consen 387 ANALANWTIRLF-QNSARS-----------------LTLFGTLVLFPDP-------------RMREKAKKFAEKSL-KIN 434 (564)
T ss_pred HHHHHHHHHHHh-hcchhh-----------------hhhhcceeeccCc-------------hhHHHHHHHHHhhh-ccC
Confidence 554443333211 111111 11111 1111111 11345556665555 344
Q ss_pred CCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 497 PNS-VTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 497 p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
|+. ...+.+...|...|..+++..+++.... ..||....+.|.+.+...+.+.+|++.|..+
T Consensus 435 P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~A 497 (564)
T KOG1174|consen 435 PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKA 497 (564)
T ss_pred CccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 442 3455556666667777777777766554 3456666677777777777777777766654
No 85
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.98 E-value=4.8e-06 Score=82.95 Aligned_cols=219 Identities=11% Similarity=-0.023 Sum_probs=143.5
Q ss_pred HHhCCChHHHHHH----HHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhhcCC
Q 007329 70 LCLNGSLEQALKY----LDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFGD 145 (608)
Q Consensus 70 ~~~~~~~~~A~~~----~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 145 (608)
+.-+.+.+++.-. +.++....++.|...|..+.-++...|+++.+.+.|++....-+. ....|+.+-..|...|.
T Consensus 294 ~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~ 372 (799)
T KOG4162|consen 294 LIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGS 372 (799)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhcc
Confidence 4445566665543 334444456678888988888999999999999999987765543 45678888889999999
Q ss_pred hhhHHHHHcccCC----CCcc-hHHHHHHHHH-hcCChhHHHHHHHHHHhcCC-C--CCCcchHHHHHHHhcC----CC-
Q 007329 146 LGHAWYVFGKMCD----RDLF-SWNVLIGGYA-KAGFFDEALSLYQRMFWVGG-V--KPDVYTFPCVLRTCGG----VP- 211 (608)
Q Consensus 146 ~~~A~~~~~~~~~----~~~~-~~~~li~~~~-~~g~~~~a~~~~~~m~~~~~-~--~p~~~~~~~ll~~~~~----~~- 211 (608)
-..|..++++-.. |+.. .+-..-..|. +-+..++++++-.+.....+ . ......|..+.-+|.. ..
T Consensus 373 ~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~ 452 (799)
T KOG4162|consen 373 DSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANL 452 (799)
T ss_pred chHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCC
Confidence 9999999997733 3222 2322223333 34677777777776665211 1 1222334334333321 11
Q ss_pred ------ChhhHHHHHHHHHHhCC-CCchhHHHHHHHHHHhcCCHHHHHHHHccCC----CCCHhHHHHHHHHHHhcCChh
Q 007329 212 ------DLKRGKEVHVHVIRFGY-EADVDVVNALITMYVKCGDLVRARLVFDGMP----KRDRISWNAMISGYFENGEYM 280 (608)
Q Consensus 212 ------~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~ 280 (608)
...++.+.+++.++.+. .|++..| +.--|+..++++.|.+..++.. ..+...|..+.-.+...+++.
T Consensus 453 ~seR~~~h~kslqale~av~~d~~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~ 530 (799)
T KOG4162|consen 453 KSERDALHKKSLQALEEAVQFDPTDPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLK 530 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhH
Confidence 23456777777777653 3333333 3445677788888888776654 347888999999999999999
Q ss_pred HHHHHHHHHHH
Q 007329 281 KGLMLFIMMRE 291 (608)
Q Consensus 281 ~a~~~~~~m~~ 291 (608)
+|+.+.+....
T Consensus 531 ~Al~vvd~al~ 541 (799)
T KOG4162|consen 531 EALDVVDAALE 541 (799)
T ss_pred HHHHHHHHHHH
Confidence 99998887654
No 86
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.97 E-value=2e-07 Score=87.91 Aligned_cols=185 Identities=14% Similarity=0.006 Sum_probs=82.5
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC--C-CcccHHHHHHHHHhC
Q 007329 402 IASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPD--K-NVISWTSIILGLRLN 478 (608)
Q Consensus 402 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~ 478 (608)
|..+...+...|+.+.|...|+...+.. +.+...|+.+...+...|++++|.+.|++..+ | +...|..+..++...
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~ 145 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYG 145 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 3444444455555555555555555443 23344555555555555555555555555432 2 223444555555555
Q ss_pred CCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHH--HHHH
Q 007329 479 NRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKP--AWNQ 556 (608)
Q Consensus 479 ~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~--A~~~ 556 (608)
|++++|++.|++... ..|+..........+...+++++|.+.+++..... .|+...+ .+ .+...|++++ +.+.
T Consensus 146 g~~~eA~~~~~~al~-~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~~--~~~~lg~~~~~~~~~~ 220 (296)
T PRK11189 146 GRYELAQDDLLAFYQ-DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-NI--VEFYLGKISEETLMER 220 (296)
T ss_pred CCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-HH--HHHHccCCCHHHHHHH
Confidence 555555555555552 22222111111112233445566666554433221 1121111 11 1222333322 2222
Q ss_pred HHhc--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007329 557 FNSN--------ERDVSAWNILLTGYAERGQGALAEEFFRKMID 592 (608)
Q Consensus 557 ~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 592 (608)
+.+. +.....|..+...+...|++++|...|++..+
T Consensus 221 ~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 221 LKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2211 11223556666666666666666666666655
No 87
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.96 E-value=1.1e-05 Score=79.74 Aligned_cols=338 Identities=11% Similarity=0.028 Sum_probs=193.4
Q ss_pred HHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCChhHHH
Q 007329 204 LRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGL 283 (608)
Q Consensus 204 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 283 (608)
|..|....+|+++..+-+ ..|.+.-...-.+.+.++...|+-++|-++-+. +-.+ -+.|+.|.+.|.+.+|.
T Consensus 564 igmy~~lhkwde~i~lae---~~~~p~~eklk~sy~q~l~dt~qd~ka~elk~s----dgd~-laaiqlyika~~p~~a~ 635 (1636)
T KOG3616|consen 564 IGMYQELHKWDEAIALAE---AKGHPALEKLKRSYLQALMDTGQDEKAAELKES----DGDG-LAAIQLYIKAGKPAKAA 635 (1636)
T ss_pred HHHHHHHHhHHHHHHHHH---hcCChHHHHHHHHHHHHHHhcCchhhhhhhccc----cCcc-HHHHHHHHHcCCchHHH
Confidence 344444455565555433 223333334445556666667777776654322 1111 23467777888777776
Q ss_pred HHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCCCC
Q 007329 284 MLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKD 363 (608)
Q Consensus 284 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 363 (608)
.....=. .+..|......+..++.+..-+++|-.+|+.+.. +...+.+|-+-+-+.+|.++-+-.-...
T Consensus 636 ~~a~n~~--~l~~de~il~~ia~alik~elydkagdlfeki~d---------~dkale~fkkgdaf~kaielarfafp~e 704 (1636)
T KOG3616|consen 636 RAALNDE--ELLADEEILEHIAAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDAFGKAIELARFAFPEE 704 (1636)
T ss_pred HhhcCHH--HhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccHHHHHHHHHHhhCcHH
Confidence 5442211 1233455555555555555555555555554421 1122223333333444444332222112
Q ss_pred hhhH-HHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 007329 364 VVSW-TTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLID 442 (608)
Q Consensus 364 ~~~~-~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 442 (608)
+++. ......+.+.|+++.|+..|-+... ..-.+.+......+.+|+.+++.+.+.+.. ...|..+.+
T Consensus 705 vv~lee~wg~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk~~--s~yy~~iad 773 (1636)
T KOG3616|consen 705 VVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIAD 773 (1636)
T ss_pred HhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHH
Confidence 2221 1122345566777777776654432 223455666778999999999988876532 345677888
Q ss_pred HhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 007329 443 MYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIH 522 (608)
Q Consensus 443 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 522 (608)
-|...|+++.|.++|-+.- .++-.|..|.+.|+++.|.++-.+.. +-......|..-..-+-..|++.+|.+++
T Consensus 774 hyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~~-~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 774 HYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEECH-GPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHhc-CchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 9999999999999997654 46677889999999999999988876 44445556666666677788888887765
Q ss_pred HHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhcCCCH--HHHHHHHHHHHhcCCHHHHHHH
Q 007329 523 AHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSNERDV--SAWNILLTGYAERGQGALAEEF 586 (608)
Q Consensus 523 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~ 586 (608)
-.+- .|+ .-|.+|-+.|..++.+.+.++-.+|. .|...+..-|...|+...|.+-
T Consensus 848 iti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~ 904 (1636)
T KOG3616|consen 848 ITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEH 904 (1636)
T ss_pred EEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHH
Confidence 4221 122 24566666677766666666653332 2344444444444554444443
No 88
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.96 E-value=3e-07 Score=78.01 Aligned_cols=199 Identities=10% Similarity=-0.069 Sum_probs=162.6
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHh
Q 007329 367 WTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSK 446 (608)
Q Consensus 367 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 446 (608)
...|.-+|.+.|+...|..-+++.++.. +-+..++..+...|.+.|+.+.|.+-|+...... +-+..+.|-....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 4456668999999999999999998874 2245688888889999999999999999988776 5566777888888999
Q ss_pred cCCHHHHHHHHccCC-CCC----cccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 007329 447 CKCIDKALEVFHQIP-DKN----VISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEI 521 (608)
Q Consensus 447 ~g~~~~A~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 521 (608)
.|++++|...|++.. .|+ ..+|..+..+..+.|+.+.|.+.|++.++-.+....+...+.....+.|++-.|..+
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 999999999999876 443 368999999999999999999999999966666677888899999999999999999
Q ss_pred HHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc---CCCHHHHH
Q 007329 522 HAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN---ERDVSAWN 568 (608)
Q Consensus 522 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~ 568 (608)
++.....+. ++....-..|..-.+.|+.+.|.+.=... -|...-|.
T Consensus 196 ~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q 244 (250)
T COG3063 196 LERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQ 244 (250)
T ss_pred HHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 999887776 68888777888888899998887755444 44444443
No 89
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.94 E-value=8e-07 Score=78.10 Aligned_cols=282 Identities=13% Similarity=0.106 Sum_probs=149.1
Q ss_pred hHHHHHhhhcCChhhHHHHHcccCCC---CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHH-HHHHhcC
Q 007329 134 NAFLSMFVKFGDLGHAWYVFGKMCDR---DLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPC-VLRTCGG 209 (608)
Q Consensus 134 ~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~-ll~~~~~ 209 (608)
++.+..+.+..++++|++++..-.++ +....+.|..+|....++..|-+.++++-. ..|...-|.. -...+.+
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q---l~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ---LHPELEQYRLYQAQSLYK 90 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hChHHHHHHHHHHHHHHH
Confidence 44444455556666666665544332 334455556666666666666666666543 2344444332 1233445
Q ss_pred CCChhhHHHHHHHHHHhCCCCchhHHHHHHH--HHHhcCCHHHHHHHHccCCC-CCHhHHHHHHHHHHhcCChhHHHHHH
Q 007329 210 VPDLKRGKEVHVHVIRFGYEADVDVVNALIT--MYVKCGDLVRARLVFDGMPK-RDRISWNAMISGYFENGEYMKGLMLF 286 (608)
Q Consensus 210 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~ 286 (608)
.+.+..|..+...|.+. ++...-..-+. ..-..+++..+..++++... .+..+.+...-...+.|+++.|.+-|
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHH
Confidence 55566666666555432 11111111111 12345777777777777763 45555555555666777788887777
Q ss_pred HHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcc----------------------------cchH
Q 007329 287 IMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVS----------------------------VCNP 338 (608)
Q Consensus 287 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------------------------~~~~ 338 (608)
+...+-+--.....|+..+.. .+.|+.+.|.+...++++.|+...+. .+|.
T Consensus 168 qaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNL 246 (459)
T KOG4340|consen 168 QAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNL 246 (459)
T ss_pred HHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhh
Confidence 777665433345556655533 35677777777777777776532211 1122
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC-----CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 007329 339 LIKMYLSFGNREEGEKVFSRMES-----KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLG 413 (608)
Q Consensus 339 l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 413 (608)
-...+.+.|+.+.|.+.+-.|.. -|++|...+.-. -..+++.+..+-+.-+.+.+. -...||..++-.||+..
T Consensus 247 KaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNe 324 (459)
T KOG4340|consen 247 KAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNE 324 (459)
T ss_pred hhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhH
Confidence 22233455666666666666654 244554433211 123334444444444444432 23456666666666666
Q ss_pred ChHHHHHHHHH
Q 007329 414 NLDLGIKLHQL 424 (608)
Q Consensus 414 ~~~~a~~~~~~ 424 (608)
-++.|-.++.+
T Consensus 325 yf~lAADvLAE 335 (459)
T KOG4340|consen 325 YFDLAADVLAE 335 (459)
T ss_pred HHhHHHHHHhh
Confidence 66666665543
No 90
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.91 E-value=6.4e-07 Score=84.50 Aligned_cols=122 Identities=11% Similarity=-0.044 Sum_probs=58.5
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCC--C-ChhhHHHHHHHHHcC
Q 007329 301 LSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMES--K-DVVSWTTMISCYEGS 377 (608)
Q Consensus 301 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~ 377 (608)
|......+...|+.+.|...|++..+.. +.+...|+.+...+...|++++|...|++..+ | +...|..+..++...
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~ 145 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYG 145 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 3333444455555555555555555443 33345555555555555555555555555533 2 234444455555555
Q ss_pred CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 007329 378 VLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLA 425 (608)
Q Consensus 378 ~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 425 (608)
|++++|++.|++..+.. |+..........+...++.++|...++..
T Consensus 146 g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 146 GRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 66666666665555542 22221111111223344555555555443
No 91
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.87 E-value=7.4e-06 Score=83.84 Aligned_cols=506 Identities=12% Similarity=-0.021 Sum_probs=228.2
Q ss_pred hHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhhcCChhhHHHHHcc
Q 007329 76 LEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFGDLGHAWYVFGK 155 (608)
Q Consensus 76 ~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 155 (608)
...|+..|-+..+..+ -=...|..+-..|....+...|.+.|....+.+.. +...+....+.|++..+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld~-~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLDV-SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 5555555555444221 12345666666666666777777777776665542 455566666677777777766666322
Q ss_pred cCCCCc-----chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCC
Q 007329 156 MCDRDL-----FSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEA 230 (608)
Q Consensus 156 ~~~~~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 230 (608)
..+.+. ..|....-.|.+.++..+|+.-|+...+.. +-|...|..+..+|...|.+..|.++|.+.......
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d--PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~- 628 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD--PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL- 628 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC--chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH-
Confidence 221111 112222223444555555555555554432 334445555555555555555555555544433211
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHccCCCC----------CHhHHHHHHHHHHhcCChhHHHHHHHHHH-------HCC
Q 007329 231 DVDVVNALITMYVKCGDLVRARLVFDGMPKR----------DRISWNAMISGYFENGEYMKGLMLFIMMR-------EVL 293 (608)
Q Consensus 231 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~-------~~~ 293 (608)
+...---..-..+..|.+.+|...+..+... -..++-.+...+.-.|-..+|.+++++-. .+.
T Consensus 629 s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~ 708 (1238)
T KOG1127|consen 629 SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS 708 (1238)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 1111111111233445555555444443311 11122222222222222222222222111 111
Q ss_pred --------------------CCCC---hhHHHHHHHHHhhcCCh---h---hHHHHHHHHHHhCCCCCcccchHHHHHHH
Q 007329 294 --------------------VDPD---FMTLSSVISASELVGDE---K---LGREVHGYVIKMGFSDDVSVCNPLIKMYL 344 (608)
Q Consensus 294 --------------------~~p~---~~~~~~ll~~~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 344 (608)
+.|+ .....++..-....+.. | .+.+.+-. ......+...|..|+..|.
T Consensus 709 ~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~--hlsl~~~~~~WyNLGinyl 786 (1238)
T KOG1127|consen 709 LQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIA--HLSLAIHMYPWYNLGINYL 786 (1238)
T ss_pred hhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhH--HHHHhhccchHHHHhHHHH
Confidence 1122 11111111111111111 1 00111100 0011222344444444443
Q ss_pred h----c----CChHHHHHHHhhCCC---CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 007329 345 S----F----GNREEGEKVFSRMES---KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLG 413 (608)
Q Consensus 345 ~----~----~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 413 (608)
+ . .+...|...+....+ .+..+||.|--. ...|.+.-+.-.|-+-.... +....+|..+.-.+....
T Consensus 787 r~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~ 864 (1238)
T KOG1127|consen 787 RYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQ 864 (1238)
T ss_pred HHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecc
Confidence 3 1 122345555555443 566667766444 44455555555554443332 224556666666667777
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCC-----C---CCcccHHHHHHHHHhCCCchHHH
Q 007329 414 NLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIP-----D---KNVISWTSIILGLRLNNRSFEAL 485 (608)
Q Consensus 414 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~---~~~~~~~~l~~~~~~~~~~~~A~ 485 (608)
+++.|...|...+... +.+...|-.........|+.-++..+|..-. + ++..-|-....-...+|+.++-+
T Consensus 865 d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I 943 (1238)
T KOG1127|consen 865 DFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESI 943 (1238)
T ss_pred cHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHH
Confidence 8888888877766544 3334444333333445566666666665411 1 33334444444445555555544
Q ss_pred HHHHHh----------HhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHh-CCCCCccHHH----HHHHHhHhcCCH
Q 007329 486 IFFRKM----------MLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRI-GVAFDGFLPN----ALLDMYVRCGRM 550 (608)
Q Consensus 486 ~~~~~m----------~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~----~l~~~~~~~g~~ 550 (608)
...+.+ ..+.+.+...|.......-+.+.+..|.+...+.+.. ..+.|...|+ .+.+.++..|.+
T Consensus 944 ~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgef 1023 (1238)
T KOG1127|consen 944 NTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEF 1023 (1238)
T ss_pred HHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcch
Confidence 333332 2445556677777777777777777777666654411 1112333333 234445556666
Q ss_pred HHHHHHHHhc--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007329 551 KPAWNQFNSN--ERDVSAWNILLTGYAERGQGALAEEFFRKMID 592 (608)
Q Consensus 551 ~~A~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 592 (608)
+.|..-+... .-|..+-..-+.. .-.|+++++.+.|++...
T Consensus 1024 e~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLs 1066 (1238)
T KOG1127|consen 1024 ESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALS 1066 (1238)
T ss_pred hhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhh
Confidence 6655544433 1122211111111 234556666666666543
No 92
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.83 E-value=2.6e-05 Score=78.25 Aligned_cols=112 Identities=19% Similarity=0.152 Sum_probs=69.8
Q ss_pred HHhHHHHHhhhcCChhhHHHHHcccCC-----------------------CCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 007329 132 LGNAFLSMFVKFGDLGHAWYVFGKMCD-----------------------RDLFSWNVLIGGYAKAGFFDEALSLYQRMF 188 (608)
Q Consensus 132 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------------------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 188 (608)
+|......+-..++.+.|++.|++... .|...|......+-..|+.+.|+.+|...+
T Consensus 860 Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~ 939 (1416)
T KOG3617|consen 860 TYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK 939 (1416)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 344444555556777777777776521 233344444444455677777777766554
Q ss_pred hcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCC
Q 007329 189 WVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMP 259 (608)
Q Consensus 189 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 259 (608)
-|..+++..|-.|+.++|-++-++ .-|....-.|.+.|-..|++.+|..+|.+..
T Consensus 940 ----------D~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 940 ----------DYFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ----------hhhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 244566667777777777776554 2355555667778888888888888776553
No 93
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.82 E-value=8.3e-08 Score=89.00 Aligned_cols=77 Identities=14% Similarity=0.071 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCH-HHHHHHHHH
Q 007329 515 LMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQG-ALAEEFFRK 589 (608)
Q Consensus 515 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~ 589 (608)
+++|..+|+++.+. +.+++.+.+.+..+....|++++|.+++++. +.|+.+...++......|+. +.+.+++.+
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 44444444443322 2233444444444444444444444444443 22334444444444444444 334444444
Q ss_pred HHH
Q 007329 590 MID 592 (608)
Q Consensus 590 m~~ 592 (608)
+..
T Consensus 262 L~~ 264 (290)
T PF04733_consen 262 LKQ 264 (290)
T ss_dssp CHH
T ss_pred HHH
Confidence 444
No 94
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.81 E-value=1.6e-05 Score=78.10 Aligned_cols=55 Identities=13% Similarity=-0.076 Sum_probs=32.5
Q ss_pred HHHHHhHhcCCHHHHHHHHHhc----CC---C------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 539 ALLDMYVRCGRMKPAWNQFNSN----ER---D------VSAWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 539 ~l~~~~~~~g~~~~A~~~~~~~----~~---~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
....++...|+.++|...++.+ .. . ....-....++...|++++|.+.+.+....
T Consensus 269 ~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 269 HAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455566677777777777665 11 1 111122233456778888888888777654
No 95
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.81 E-value=1e-05 Score=71.32 Aligned_cols=319 Identities=11% Similarity=-0.015 Sum_probs=169.3
Q ss_pred hHHHHHHHHhCCChHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhh
Q 007329 63 PNSRLNELCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVK 142 (608)
Q Consensus 63 ~~~ll~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (608)
+.+.+..+.+..++++|++++..-.++.. .+....+.+..+|....++..|-..++++-...++....-+- -...+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY-~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLY-QAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH-HHHHHHH
Confidence 55667777777788888887777665442 144555555566677777777777777766655432221111 1233445
Q ss_pred cCChhhHHHHHcccCC-CCcchHHHHHH--HHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHH
Q 007329 143 FGDLGHAWYVFGKMCD-RDLFSWNVLIG--GYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEV 219 (608)
Q Consensus 143 ~g~~~~A~~~~~~~~~-~~~~~~~~li~--~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 219 (608)
.+.+.+|+++...|.. ++...-..-+. .....+++..+..++++....+ +..+.+...-...+.|+++.|.+-
T Consensus 91 A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en----~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN----EADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred hcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC----ccchhccchheeeccccHHHHHHH
Confidence 6666777777666644 22211111111 1223455556665555543211 222222222333456666666666
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCC-----------------C---------------HhHHH
Q 007329 220 HVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKR-----------------D---------------RISWN 267 (608)
Q Consensus 220 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------------~---------------~~~~~ 267 (608)
|+...+.|--.....||..+..| +.|+.+.|++...++.++ | +..+|
T Consensus 167 FqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfN 245 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFN 245 (459)
T ss_pred HHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhh
Confidence 66666554333444555444333 445666666655544321 1 11344
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC-CCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhc
Q 007329 268 AMISGYFENGEYMKGLMLFIMMREV-LVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSF 346 (608)
Q Consensus 268 ~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 346 (608)
.-...+.+.|+++.|.+-+..|.-+ ....|+.|...+.-.- ..+++-...+-+..+.+.. +....||..++-.||+.
T Consensus 246 LKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKN 323 (459)
T KOG4340|consen 246 LKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKN 323 (459)
T ss_pred hhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhh
Confidence 4445566778888888877777433 2345666655443221 2234444444455555543 34556777888888888
Q ss_pred CChHHHHHHHhhCCCC-----ChhhHHHHHHHHHcCCCchHHHHHHHHH
Q 007329 347 GNREEGEKVFSRMESK-----DVVSWTTMISCYEGSVLPDKAVETYQMM 390 (608)
Q Consensus 347 ~~~~~a~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m 390 (608)
.-++-|-.++.+-... +...|+.+=..-...-..++|.+-++.+
T Consensus 324 eyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 324 EYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred HHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 8888888877665542 3333443322222333455555544433
No 96
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.79 E-value=2.1e-07 Score=86.35 Aligned_cols=246 Identities=10% Similarity=0.072 Sum_probs=162.4
Q ss_pred HHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHcCCCchHHHHH
Q 007329 307 ASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVVSWTTMISCYEGSVLPDKAVET 386 (608)
Q Consensus 307 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 386 (608)
-+.-.|++..+..-.+ .....-..+......+.+++...|+.+.++.-+..-..|.......+...+...++-+.++.-
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~ 88 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEE 88 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHH
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHH
Confidence 3445677777775554 211111112334556778899999988776666555556666665555544443555666666
Q ss_pred HHHHHHCCCCCCHHHHH-HHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCCc
Q 007329 387 YQMMEAEGSMPDEITIA-SVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNV 465 (608)
Q Consensus 387 ~~~m~~~g~~p~~~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 465 (608)
+++....+..++..++. .....+...|+++.|++++... .+.......+.+|.+.++++.|.+.++.|.+-+.
T Consensus 89 l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~e 162 (290)
T PF04733_consen 89 LKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDE 162 (290)
T ss_dssp HHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSC
T ss_pred HHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 65554444333333333 3335567789999999887642 4567777889999999999999999999986432
Q ss_pred -ccHHHHHHHH----HhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHH
Q 007329 466 -ISWTSIILGL----RLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNAL 540 (608)
Q Consensus 466 -~~~~~l~~~~----~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 540 (608)
.+...+..++ .-.+.+.+|..+|+++.....++..+.+.+..++...|++++|.+++.++.+.+.. ++.+...+
T Consensus 163 D~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNl 241 (290)
T PF04733_consen 163 DSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANL 241 (290)
T ss_dssp CHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHH
Confidence 2333343333 33446999999999998777889999999999999999999999999998876655 56676777
Q ss_pred HHHhHhcCCH-HHHHHHHHhc
Q 007329 541 LDMYVRCGRM-KPAWNQFNSN 560 (608)
Q Consensus 541 ~~~~~~~g~~-~~A~~~~~~~ 560 (608)
+.+....|+. +.+.+.+..+
T Consensus 242 iv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 242 IVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHhCCChhHHHHHHHHH
Confidence 8888888887 6677788777
No 97
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=2.8e-05 Score=74.59 Aligned_cols=217 Identities=12% Similarity=0.031 Sum_probs=112.7
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHH-------H
Q 007329 367 WTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIAN-------T 439 (608)
Q Consensus 367 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~ 439 (608)
...+.++..+..+++.|++.+....+.. -+..-++....+|...|.+...........+.|.. ...-|+ .
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 3445556666777788888887777654 34444555666777777777766666655554422 111122 2
Q ss_pred HHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHH-HHHHHHHHHhccCcHHHH
Q 007329 440 LIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSV-TLVSILSACARIGALMCG 518 (608)
Q Consensus 440 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~-~~~~ll~~~~~~~~~~~a 518 (608)
+..+|.+.++.+.++..|++...+... -....+....++++...+... -+.|... -...-...+.+.|++..|
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a-~~~pe~A~e~r~kGne~Fk~gdy~~A 377 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKA-YINPEKAEEEREKGNEAFKKGDYPEA 377 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHH-hhChhHHHHHHHHHHHHHhccCHHHH
Confidence 334666677788888877765421110 001111222223332222222 1222211 111124445556666666
Q ss_pred HHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 519 KEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN---ER-DVSAWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 519 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
...+.++++..+. |...|....-+|.+.|.+..|+.-.+.. .| ....|.-=..++....+++.|.+.|++.++.
T Consensus 378 v~~YteAIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 378 VKHYTEAIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6666666665544 5566666666666666666666655554 22 2333444444455555566666666665553
No 98
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.76 E-value=1.6e-05 Score=88.73 Aligned_cols=352 Identities=10% Similarity=-0.071 Sum_probs=211.2
Q ss_pred HHhcCCHHHHHHHHccCCCCCHh--HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHH
Q 007329 242 YVKCGDLVRARLVFDGMPKRDRI--SWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGRE 319 (608)
Q Consensus 242 ~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 319 (608)
+...|++.+|..........+.. ............|+++.+..++..+.......+..........+...|+++++..
T Consensus 351 ~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~ 430 (903)
T PRK04841 351 WLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNT 430 (903)
T ss_pred HHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHH
Confidence 34445555555544444333211 1111223344567777766666655221111122222333344557789999998
Q ss_pred HHHHHHHhCCC------CC--cccchHHHHHHHhcCChHHHHHHHhhCCC----CCh----hhHHHHHHHHHcCCCchHH
Q 007329 320 VHGYVIKMGFS------DD--VSVCNPLIKMYLSFGNREEGEKVFSRMES----KDV----VSWTTMISCYEGSVLPDKA 383 (608)
Q Consensus 320 ~~~~~~~~~~~------~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~----~~~~~li~~~~~~~~~~~a 383 (608)
++....+.--. +. ......+...+...|++++|...+++... .+. ...+.+...+...|++++|
T Consensus 431 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A 510 (903)
T PRK04841 431 LLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARA 510 (903)
T ss_pred HHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 88877543111 11 11122234455678999999988877543 221 2345556677889999999
Q ss_pred HHHHHHHHHCCC---CC--CHHHHHHHHHHHHccCChHHHHHHHHHHHHh----CCCC---chhHHHHHHHHhHhcCCHH
Q 007329 384 VETYQMMEAEGS---MP--DEITIASVLSACACLGNLDLGIKLHQLAMRT----GLIS---YIIIANTLIDMYSKCKCID 451 (608)
Q Consensus 384 ~~~~~~m~~~g~---~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~li~~~~~~g~~~ 451 (608)
...+++.....- .+ ...++..+...+...|+++.|...+++..+. +... ....+..+...+...|+++
T Consensus 511 ~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~ 590 (903)
T PRK04841 511 LAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLD 590 (903)
T ss_pred HHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHH
Confidence 999988764311 11 1234555666778899999999988876642 2111 1233445566677789999
Q ss_pred HHHHHHccCCC------C--CcccHHHHHHHHHhCCCchHHHHHHHHhH---hCCCCCHH--H-H-HHHHHHHhccCcHH
Q 007329 452 KALEVFHQIPD------K--NVISWTSIILGLRLNNRSFEALIFFRKMM---LNLKPNSV--T-L-VSILSACARIGALM 516 (608)
Q Consensus 452 ~A~~~~~~~~~------~--~~~~~~~l~~~~~~~~~~~~A~~~~~~m~---~~~~p~~~--~-~-~~ll~~~~~~~~~~ 516 (608)
+|...+++... + ....+..+...+...|++++|.+.+++.. ........ . . ...+..+...|+.+
T Consensus 591 ~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 670 (903)
T PRK04841 591 EAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKE 670 (903)
T ss_pred HHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHH
Confidence 99988887642 1 12234445667788999999999998886 11111111 1 0 11123344578899
Q ss_pred HHHHHHHHHHHhCCCCCc---cHHHHHHHHhHhcCCHHHHHHHHHhc-C-----CC----HHHHHHHHHHHHhcCCHHHH
Q 007329 517 CGKEIHAHALRIGVAFDG---FLPNALLDMYVRCGRMKPAWNQFNSN-E-----RD----VSAWNILLTGYAERGQGALA 583 (608)
Q Consensus 517 ~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~-----~~----~~~~~~l~~~~~~~g~~~~A 583 (608)
.|.+.+............ ..+..+..++...|++++|...++++ . .. ..+...+..++...|+.++|
T Consensus 671 ~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A 750 (903)
T PRK04841 671 AAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEA 750 (903)
T ss_pred HHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 988887765432211111 11345677888999999999999887 1 11 23566677788999999999
Q ss_pred HHHHHHHHHc
Q 007329 584 EEFFRKMIDS 593 (608)
Q Consensus 584 ~~~~~~m~~~ 593 (608)
.+.+++..+.
T Consensus 751 ~~~L~~Al~l 760 (903)
T PRK04841 751 QRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHH
Confidence 9999999875
No 99
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.75 E-value=3.7e-05 Score=78.99 Aligned_cols=469 Identities=13% Similarity=0.004 Sum_probs=266.6
Q ss_pred chhhhHHHHHHHHhcCCcchhHHhHHHHHhhhcCChhhHHHHHcccCC---CCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 007329 111 YDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFGDLGHAWYVFGKMCD---RDLFSWNVLIGGYAKAGFFDEALSLYQRM 187 (608)
Q Consensus 111 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m 187 (608)
...|...|-..++..+.. ...|..|...|....+...|.+.|++..+ .+..++....+.|++..+++.|..+.-..
T Consensus 474 ~~~al~ali~alrld~~~-apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSL-APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcccch-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 555555554444444322 34578889999988899999999998855 45678889999999999999999985544
Q ss_pred HhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCHhH-H
Q 007329 188 FWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRIS-W 266 (608)
Q Consensus 188 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~ 266 (608)
-+......-...|..+.-.+...++..++..-|+...+.. +.|...|..+..+|..+|++..|.++|.+...-++.. |
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y 631 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKY 631 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHH
Confidence 3332111112223334445778899999999999988875 5688899999999999999999999998876543332 2
Q ss_pred H--HHHHHHHhcCChhHHHHHHHHHHHC------CCCCChhHHHHHHHHHhhcCCh-------hhHHHHHHHHHHhCCCC
Q 007329 267 N--AMISGYFENGEYMKGLMLFIMMREV------LVDPDFMTLSSVISASELVGDE-------KLGREVHGYVIKMGFSD 331 (608)
Q Consensus 267 ~--~li~~~~~~~~~~~a~~~~~~m~~~------~~~p~~~~~~~ll~~~~~~~~~-------~~a~~~~~~~~~~~~~~ 331 (608)
. -....-+..|.+.+|++.+...... +..--..++..+...+...|-. +++.+.+..........
T Consensus 632 ~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~ 711 (1238)
T KOG1127|consen 632 GRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQS 711 (1238)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence 2 2233456688899988888776542 1111122333333333333322 22333332222222111
Q ss_pred CcccchHH-------------------HHHHHh----cCCh---H---HHHHHHhhCCC--CChhhHHHHHHHHHc----
Q 007329 332 DVSVCNPL-------------------IKMYLS----FGNR---E---EGEKVFSRMES--KDVVSWTTMISCYEG---- 376 (608)
Q Consensus 332 ~~~~~~~l-------------------~~~~~~----~~~~---~---~a~~~~~~~~~--~~~~~~~~li~~~~~---- 376 (608)
+...|-.+ +..+.+ .+.. + -+.+.+-.-.+ .+..+|..+...|.+
T Consensus 712 ~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~ 791 (1238)
T KOG1127|consen 712 DRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLL 791 (1238)
T ss_pred hHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHH
Confidence 22222111 111111 1111 0 00000000000 123344444443332
Q ss_pred C----CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHH
Q 007329 377 S----VLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDK 452 (608)
Q Consensus 377 ~----~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 452 (608)
. .+...|+..+.+..+.. .-+..+|+.| ......|++.-+..-|-.-.... +....+|.-+...+.+..+++-
T Consensus 792 l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaL-GVlsg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~ 868 (1238)
T KOG1127|consen 792 LGETMKDACTAIRCCKKAVSLC-ANNEGLWNAL-GVLSGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEH 868 (1238)
T ss_pred cCCcchhHHHHHHHHHHHHHHh-hccHHHHHHH-HHhhccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHH
Confidence 1 12235666666665542 1234444444 34455566666655554433333 3445566666777788888888
Q ss_pred HHHHHccCCCC---CcccHHHHHHHHHhCCCchHHHHHHHHh--H---hCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 007329 453 ALEVFHQIPDK---NVISWTSIILGLRLNNRSFEALIFFRKM--M---LNLKPNSVTLVSILSACARIGALMCGKEIHAH 524 (608)
Q Consensus 453 A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m--~---~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 524 (608)
|...|.....- |...|--........|+.-++..+|..- . +|-.++..-+.....-....|+.++-....+.
T Consensus 869 A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~k 948 (1238)
T KOG1127|consen 869 AEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARK 948 (1238)
T ss_pred hhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhh
Confidence 88888887743 4456666666666778888888887762 2 45555555555555555566665543333222
Q ss_pred H----------HHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc------CCCHHHHH----HHHHHHHhcCCHHHHH
Q 007329 525 A----------LRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN------ERDVSAWN----ILLTGYAERGQGALAE 584 (608)
Q Consensus 525 ~----------~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~------~~~~~~~~----~l~~~~~~~g~~~~A~ 584 (608)
+ .. +..-+...|...+....+.+.++.|.+...+. +-|...|+ .+.+.+...|.++.|.
T Consensus 949 i~sAs~al~~yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~ 1027 (1238)
T KOG1127|consen 949 ISSASLALSYYFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAK 1027 (1238)
T ss_pred hhhhHHHHHHHHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHh
Confidence 2 22 22224566667777777777777777776665 34555555 3344455666666554
Q ss_pred H
Q 007329 585 E 585 (608)
Q Consensus 585 ~ 585 (608)
.
T Consensus 1028 ~ 1028 (1238)
T KOG1127|consen 1028 K 1028 (1238)
T ss_pred h
Confidence 3
No 100
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=8.5e-06 Score=77.99 Aligned_cols=217 Identities=12% Similarity=0.014 Sum_probs=126.1
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCCCCh---hhHH-------HH
Q 007329 301 LSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDV---VSWT-------TM 370 (608)
Q Consensus 301 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~-------~l 370 (608)
...+.++..+..+++.+.+-+....+.. .+..-++....+|...|.+.++........+... .-|+ .+
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 3445556666667777777777766654 4555566677777777777666655554333111 1122 23
Q ss_pred HHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCH
Q 007329 371 ISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCI 450 (608)
Q Consensus 371 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 450 (608)
..+|.+.++++.++..|++.......||..+ +....+++....+...-.+... ..-...-...+.+.|++
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCH
Confidence 3356666778888888887666544444322 1122222222222211111111 11111224556677888
Q ss_pred HHHHHHHccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 007329 451 DKALEVFHQIPD---KNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALR 527 (608)
Q Consensus 451 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 527 (608)
..|.+.+.++.. .|...|.....+|.+.|.+..|+.-.+..++..++....|..-..++....+++.|++.|++.++
T Consensus 375 ~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 375 PEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888877663 24567777888888888888887777766644444455565556666666777788888777776
Q ss_pred hC
Q 007329 528 IG 529 (608)
Q Consensus 528 ~~ 529 (608)
.+
T Consensus 455 ~d 456 (539)
T KOG0548|consen 455 LD 456 (539)
T ss_pred cC
Confidence 65
No 101
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.72 E-value=2.5e-05 Score=76.67 Aligned_cols=194 Identities=14% Similarity=0.024 Sum_probs=114.9
Q ss_pred hHHHHHHHHhCCChHHHHHHHHHHhhcCC-CCChhhHHH-HHHHhhccCCchhhhHHHHHHHHhcCCcchhHHh---HHH
Q 007329 63 PNSRLNELCLNGSLEQALKYLDSMQELNI-CVDEDALVN-LVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGN---AFL 137 (608)
Q Consensus 63 ~~~ll~~~~~~~~~~~A~~~~~~~~~~g~-~~~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~l~ 137 (608)
+..+...+...|+.+++...+....+... .++...... ....+...|++++|..+++...+..+.. ...+. ...
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~-~~a~~~~~~~~ 87 (355)
T cd05804 9 HAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRD-LLALKLHLGAF 87 (355)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-HHHHHHhHHHH
Confidence 44455556667778887776666544322 122211111 1224566788899998888888776543 22322 111
Q ss_pred HHhhhcCChhhHHHHHcccCCCCc---chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChh
Q 007329 138 SMFVKFGDLGHAWYVFGKMCDRDL---FSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLK 214 (608)
Q Consensus 138 ~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~ 214 (608)
......|..+.+.+.++.....+. .....+...+...|++++|.+.+++..+.. +.+...+..+...+...|+++
T Consensus 88 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--p~~~~~~~~la~i~~~~g~~~ 165 (355)
T cd05804 88 GLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--PDDAWAVHAVAHVLEMQGRFK 165 (355)
T ss_pred HhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHH
Confidence 122234555666666654322222 233344556777888888888888887654 444556667777777888888
Q ss_pred hHHHHHHHHHHhCC-CCch--hHHHHHHHHHHhcCCHHHHHHHHccCC
Q 007329 215 RGKEVHVHVIRFGY-EADV--DVVNALITMYVKCGDLVRARLVFDGMP 259 (608)
Q Consensus 215 ~a~~~~~~~~~~g~-~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~ 259 (608)
+|...++...+... .++. ..|..+...+...|++++|..++++..
T Consensus 166 eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 166 EGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 88888877766432 1222 234456667777777777777777654
No 102
>PF12854 PPR_1: PPR repeat
Probab=98.67 E-value=3.3e-08 Score=57.88 Aligned_cols=33 Identities=42% Similarity=0.535 Sum_probs=24.7
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHccCC
Q 007329 227 GYEADVDVVNALITMYVKCGDLVRARLVFDGMP 259 (608)
Q Consensus 227 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 259 (608)
|+.||..+|++||++||+.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 667777777777777777777777777777763
No 103
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.65 E-value=3.4e-05 Score=86.05 Aligned_cols=257 Identities=11% Similarity=-0.020 Sum_probs=114.4
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCh----hHHHHHHHHHhhcCChhhHHHHHHHHHHhCCC---C--CcccchHHHHH
Q 007329 272 GYFENGEYMKGLMLFIMMREVLVDPDF----MTLSSVISASELVGDEKLGREVHGYVIKMGFS---D--DVSVCNPLIKM 342 (608)
Q Consensus 272 ~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~l~~~ 342 (608)
.+...|++++|...+++....-...+. ...+.+...+...|+++.|...+++.....-. + ....+..+...
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 344566666666666655442111111 12223333444566666666666555432110 0 01123334445
Q ss_pred HHhcCChHHHHHHHhhCCC-------CC----hhhHHHHHHHHHcCCCchHHHHHHHHHHHCC--CCCC--HHHHHHHHH
Q 007329 343 YLSFGNREEGEKVFSRMES-------KD----VVSWTTMISCYEGSVLPDKAVETYQMMEAEG--SMPD--EITIASVLS 407 (608)
Q Consensus 343 ~~~~~~~~~a~~~~~~~~~-------~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~p~--~~t~~~ll~ 407 (608)
+...|++++|...+++... ++ ...+..+...+...|++++|...+.+..... ..+. ...+..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 5556666666665544322 00 1122233334455566666666665544321 1111 222333344
Q ss_pred HHHccCChHHHHHHHHHHHHhCCCCc-hhHH-----HHHHHHhHhcCCHHHHHHHHccCCCCCcc-------cHHHHHHH
Q 007329 408 ACACLGNLDLGIKLHQLAMRTGLISY-IIIA-----NTLIDMYSKCKCIDKALEVFHQIPDKNVI-------SWTSIILG 474 (608)
Q Consensus 408 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~~l~~~ 474 (608)
.....|+.+.|.+.++.......... ...+ ...+..+...|+.+.|.+.+.....+... .+..+..+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 45556666666666655543210000 0000 01112333456666666665544432110 02234445
Q ss_pred HHhCCCchHHHHHHHHhH---h--CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 007329 475 LRLNNRSFEALIFFRKMM---L--NLKPN-SVTLVSILSACARIGALMCGKEIHAHALRI 528 (608)
Q Consensus 475 ~~~~~~~~~A~~~~~~m~---~--~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 528 (608)
+...|++++|...+++.. . +...+ ..+...+..++...|+.++|...+.++.+.
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 556666666666666655 1 11111 123444455555666666666666666544
No 104
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.63 E-value=8.6e-06 Score=80.77 Aligned_cols=217 Identities=14% Similarity=0.099 Sum_probs=178.1
Q ss_pred CCCCcccchHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007329 329 FSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSA 408 (608)
Q Consensus 329 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 408 (608)
++|-...-..+...+...|-...|..+|+++. .|...|.+|+..|+..+|..+..+-.++ +||+.-|..+.+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhh
Confidence 34445555678888999999999999998865 6777889999999999999999888874 7899999999988
Q ss_pred HHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCC---CcccHHHHHHHHHhCCCchHHH
Q 007329 409 CACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDK---NVISWTSIILGLRLNNRSFEAL 485 (608)
Q Consensus 409 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~ 485 (608)
.....-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+- -..+|-.+..+..+.+++..|.
T Consensus 467 ~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence 88888889999888765432 1112222233478999999999976543 3468888888899999999999
Q ss_pred HHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 486 IFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 486 ~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
+.|.....+-+-+...|+.+-.+|.+.++-.+|...+.++.+.+.+ +..+|...+-...+.|.+++|.+.+.++
T Consensus 540 ~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 540 KAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 9999999666667789999999999999999999999999999854 6777888888889999999999999887
No 105
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.60 E-value=0.0012 Score=67.70 Aligned_cols=155 Identities=16% Similarity=0.128 Sum_probs=83.5
Q ss_pred HHHHHHHHHccCChH---HHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCCc--ccHHH-HHHHH
Q 007329 402 IASVLSACACLGNLD---LGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNV--ISWTS-IILGL 475 (608)
Q Consensus 402 ~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~-l~~~~ 475 (608)
.+.|+..+-+.++.. +|+-+++...... +.+..+--.+|..|.-.|-+..|.++|+.+.-+++ .|... +...+
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~~~ 517 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIFRRA 517 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHHHHH
Confidence 445666777776654 3444444444333 44555556778888888888888888887764332 12222 23344
Q ss_pred HhCCCchHHHHHHHHhH---hCCCCCHHHHHHHHHHHhccCcHHHHHHH---HHHHHHhCCCCCccHHHHHHHHhHhcCC
Q 007329 476 RLNNRSFEALIFFRKMM---LNLKPNSVTLVSILSACARIGALMCGKEI---HAHALRIGVAFDGFLPNALLDMYVRCGR 549 (608)
Q Consensus 476 ~~~~~~~~A~~~~~~m~---~~~~p~~~~~~~ll~~~~~~~~~~~a~~~---~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 549 (608)
...|++..+...+.... ....-+..-|..+ || +.|.+....+. -+++......--..+-+..++..+..++
T Consensus 518 ~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~--AY-r~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~ 594 (932)
T KOG2053|consen 518 ETSGRSSFASNTFNEHLKFYDSSLKETPEYIAL--AY-RRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADR 594 (932)
T ss_pred HhcccchhHHHHHHHHHHHHhhhhhhhHHHHHH--HH-HcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 55667777777766655 1111222222222 22 33444443333 2233222111123344556777778888
Q ss_pred HHHHHHHHHhc
Q 007329 550 MKPAWNQFNSN 560 (608)
Q Consensus 550 ~~~A~~~~~~~ 560 (608)
.++-...++.+
T Consensus 595 ~~q~~~~~~~~ 605 (932)
T KOG2053|consen 595 GTQLLKLLESM 605 (932)
T ss_pred HHHHHHHHhcc
Confidence 88877777776
No 106
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.60 E-value=4.8e-05 Score=68.66 Aligned_cols=312 Identities=13% Similarity=0.059 Sum_probs=162.8
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHH---HHHhhcCChhhHHHHHHHHHHhCCCCCcccc-h
Q 007329 262 DRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVI---SASELVGDEKLGREVHGYVIKMGFSDDVSVC-N 337 (608)
Q Consensus 262 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~ 337 (608)
++.-.-.+...+...|++.+|+.-|....+. |+..|.++. ..|...|+...|..-+..+++. .||-..- -
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARi 110 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARI 110 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHH
Confidence 3444445666677777777777777766553 333343333 3455566666666666666554 3442211 1
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHH
Q 007329 338 PLIKMYLSFGNREEGEKVFSRMESKDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDL 417 (608)
Q Consensus 338 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 417 (608)
.-...+.+.|.++.|..-|+.+.+.+..- |...+|..-+..+. ........+..+...|+...
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~~s~-----------~~~~eaqskl~~~~------e~~~l~~ql~s~~~~GD~~~ 173 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHEPSN-----------GLVLEAQSKLALIQ------EHWVLVQQLKSASGSGDCQN 173 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcCCCc-----------chhHHHHHHHHhHH------HHHHHHHHHHHHhcCCchhh
Confidence 12234556666666666666655421100 00000000000000 00111122333444555666
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccC---CCCCcccHHHHHHHHHhCCCchHHHHHHHHhHhC
Q 007329 418 GIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQI---PDKNVISWTSIILGLRLNNRSFEALIFFRKMMLN 494 (608)
Q Consensus 418 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 494 (608)
|+.....+++-. +.+...|..-..+|...|++..|+.-+... ...+.....-+-..+...|+.+.++...++.+ .
T Consensus 174 ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL-K 251 (504)
T KOG0624|consen 174 AIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECL-K 251 (504)
T ss_pred HHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHH-c
Confidence 666555555543 445555555556666666666665444332 23344444444555555666666666655555 4
Q ss_pred CCCCHHH----HHHH---------HHHHhccCcHHHHHHHHHHHHHhCCCCCccH---HHHHHHHhHhcCCHHHHHHHHH
Q 007329 495 LKPNSVT----LVSI---------LSACARIGALMCGKEIHAHALRIGVAFDGFL---PNALLDMYVRCGRMKPAWNQFN 558 (608)
Q Consensus 495 ~~p~~~~----~~~l---------l~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~ 558 (608)
+.||... |..| +......+++.++++-.+...+..+...... +..+-.+|...|++.+|++...
T Consensus 252 ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ 331 (504)
T KOG0624|consen 252 LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCK 331 (504)
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHH
Confidence 4454332 1111 1223345666677777776666655533333 3344556667778888888877
Q ss_pred hc---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 559 SN---ER-DVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 559 ~~---~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
++ .| |..++---..+|.-..+++.|+.-|++..+. ++++.
T Consensus 332 evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~--n~sn~ 375 (504)
T KOG0624|consen 332 EVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL--NESNT 375 (504)
T ss_pred HHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CcccH
Confidence 76 33 3666666677777777888888888887764 44443
No 107
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.57 E-value=5.6e-06 Score=72.53 Aligned_cols=115 Identities=15% Similarity=0.081 Sum_probs=67.1
Q ss_pred CCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHh-HhcCC--HHHHH
Q 007329 478 NNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMY-VRCGR--MKPAW 554 (608)
Q Consensus 478 ~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A~ 554 (608)
.++.++++..++..+..-+.|...|..+...+...|++++|...++++.+..+. +...+..+..++ ...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 344455555555555444555666666666666666666666666666665544 555555555543 45555 36666
Q ss_pred HHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 555 NQFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 555 ~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
+++++. +.+...+..+...+...|++++|...|+++.+.
T Consensus 131 ~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 131 EMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 666665 334556666666666666666666666666554
No 108
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.56 E-value=3.9e-06 Score=76.84 Aligned_cols=178 Identities=14% Similarity=0.025 Sum_probs=115.0
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC-C-chhHHHHHHHHhHhcCCHHHHHHHHccCCC--CC-cc---cHH
Q 007329 398 DEITIASVLSACACLGNLDLGIKLHQLAMRTGLI-S-YIIIANTLIDMYSKCKCIDKALEVFHQIPD--KN-VI---SWT 469 (608)
Q Consensus 398 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~---~~~ 469 (608)
....+..+...+...|+++.|...++.+.+.... + ....+..+..++.+.|++++|...++++.+ |+ .. .+.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 4556667777788888888888888887765421 1 123556677778888888888888887753 21 11 344
Q ss_pred HHHHHHHhC--------CCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHH
Q 007329 470 SIILGLRLN--------NRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALL 541 (608)
Q Consensus 470 ~l~~~~~~~--------~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 541 (608)
.+..++.+. |++++|.+.|+++....+-+......+..... .. .... .....+.
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~----~~------~~~~--------~~~~~~a 173 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY----LR------NRLA--------GKELYVA 173 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH----HH------HHHH--------HHHHHHH
Confidence 444455443 56777777777777333323222222211100 00 0000 0112466
Q ss_pred HHhHhcCCHHHHHHHHHhc---CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 542 DMYVRCGRMKPAWNQFNSN---ERD----VSAWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 542 ~~~~~~g~~~~A~~~~~~~---~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
..|.+.|++++|...+++. .|+ ...|..++.++...|++++|..+++.+...
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7899999999999999988 332 468899999999999999999999998764
No 109
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.55 E-value=0.00032 Score=63.53 Aligned_cols=323 Identities=13% Similarity=0.075 Sum_probs=155.6
Q ss_pred hhHHhHHHHHhhhcCChhhHHHHHcccCCCCcchHHHHHH---HHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHH
Q 007329 130 VRLGNAFLSMFVKFGDLGHAWYVFGKMCDRDLFSWNVLIG---GYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRT 206 (608)
Q Consensus 130 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~ 206 (608)
+.-.-.+.+.+...|++.+|+.-|....+-|+..|.++.+ .|...|+...|+.=+.+..+ ++||-..-..
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle---lKpDF~~ARi---- 110 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE---LKPDFMAARI---- 110 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh---cCccHHHHHH----
Confidence 3333455566666677777777777776666666655543 45566666666666666654 3455322111
Q ss_pred hcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCChhHHHHHH
Q 007329 207 CGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLF 286 (608)
Q Consensus 207 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 286 (608)
.-...+.+.|.+++|..-|+.+.+.++.- +....++.+.-..++-+.
T Consensus 111 ------------------------------QRg~vllK~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~~~-- 157 (504)
T KOG0624|consen 111 ------------------------------QRGVVLLKQGELEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQEHWV-- 157 (504)
T ss_pred ------------------------------HhchhhhhcccHHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHHHH--
Confidence 01122344455555544444443321100 000000000000011111
Q ss_pred HHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCC---CC
Q 007329 287 IMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMES---KD 363 (608)
Q Consensus 287 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~ 363 (608)
....+..+...|+...|+.....+++.. +.|...+..-..+|...|++..|+.-++...+ .+
T Consensus 158 --------------l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~Dn 222 (504)
T KOG0624|consen 158 --------------LVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDN 222 (504)
T ss_pred --------------HHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccc
Confidence 1112222334445555555555554443 44555555556666666666666554444332 34
Q ss_pred hhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 007329 364 VVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDM 443 (608)
Q Consensus 364 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 443 (608)
...+--+-..+-..|+.+.++....+-.+. .||....-..- ..+.+....++.|.+
T Consensus 223 Te~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~Y------KklkKv~K~les~e~---------------- 278 (504)
T KOG0624|consen 223 TEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFY------KKLKKVVKSLESAEQ---------------- 278 (504)
T ss_pred hHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHH------HHHHHHHHHHHHHHH----------------
Confidence 444444444555566666666665555543 45543221111 111111222222111
Q ss_pred hHhcCCHHHHHHHHccCCC--CC--c---ccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHH
Q 007329 444 YSKCKCIDKALEVFHQIPD--KN--V---ISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALM 516 (608)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~~--~~--~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~ 516 (608)
....+++.++.+..+...+ |. . ..+..+-.++...+++.+|++.-.+.+.-.+.|..++.--..+|.-...++
T Consensus 279 ~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD 358 (504)
T KOG0624|consen 279 AIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYD 358 (504)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHH
Confidence 1223344444444443332 21 1 123334456666777888887777777333334677777777887777888
Q ss_pred HHHHHHHHHHHhCCC
Q 007329 517 CGKEIHAHALRIGVA 531 (608)
Q Consensus 517 ~a~~~~~~~~~~~~~ 531 (608)
.|+.-|+.+.+.+..
T Consensus 359 ~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 359 DAIHDYEKALELNES 373 (504)
T ss_pred HHHHHHHHHHhcCcc
Confidence 888888877776544
No 110
>PF12854 PPR_1: PPR repeat
Probab=98.53 E-value=1.3e-07 Score=55.36 Aligned_cols=32 Identities=38% Similarity=0.600 Sum_probs=17.9
Q ss_pred CCCCchhHHHHHHHHhHhcCCHHHHHHHHccC
Q 007329 429 GLISYIIIANTLIDMYSKCKCIDKALEVFHQI 460 (608)
Q Consensus 429 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 460 (608)
|+.||..+|++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
No 111
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.52 E-value=1e-05 Score=85.76 Aligned_cols=204 Identities=12% Similarity=0.124 Sum_probs=157.7
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHh-CCCC---chhHHHHHHHHhHhcCCHHHHHHHHccCCCC-C-cccHHHHH
Q 007329 399 EITIASVLSACACLGNLDLGIKLHQLAMRT-GLIS---YIIIANTLIDMYSKCKCIDKALEVFHQIPDK-N-VISWTSII 472 (608)
Q Consensus 399 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~l~ 472 (608)
...|...|......++.+.|+++.+++... ++.- -..+|.++++.-.--|.-+...++|++..+- | ...|..|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~ 1537 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLL 1537 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 456777777788888999999988877742 2222 2345667777766777788888888887752 2 35678888
Q ss_pred HHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCC-CccHHHHHHHHhHhcCCHH
Q 007329 473 LGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAF-DGFLPNALLDMYVRCGRMK 551 (608)
Q Consensus 473 ~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 551 (608)
..|.+.+.+++|.++++.|...+......|...+..+.+..+-+.|..++.++.+.-++- ......-.+..-.+.|+.+
T Consensus 1538 ~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDae 1617 (1710)
T KOG1070|consen 1538 GIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAE 1617 (1710)
T ss_pred HHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCch
Confidence 889999999999999999996666777788888899999999899999999888765442 2334445566667889999
Q ss_pred HHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchhh
Q 007329 552 PAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKLMG 602 (608)
Q Consensus 552 ~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 602 (608)
.++.+|+.. +.-...|+.++..-.++|+.+.++.+|++.+..++.|.....
T Consensus 1618 RGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKf 1672 (1710)
T KOG1070|consen 1618 RGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKF 1672 (1710)
T ss_pred hhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHH
Confidence 999999887 556778999999999999999999999999988887766533
No 112
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.51 E-value=2.6e-06 Score=70.44 Aligned_cols=92 Identities=10% Similarity=-0.042 Sum_probs=55.4
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhc
Q 007329 468 WTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRC 547 (608)
Q Consensus 468 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 547 (608)
+..+...+.+.|++++|...|+....--+.+...+..+..++...|++++|...++++.+.++. ++..+..++.++.+.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHc
Confidence 3444555556666666666666665333445556666666666666666666666666665443 555566666666666
Q ss_pred CCHHHHHHHHHhc
Q 007329 548 GRMKPAWNQFNSN 560 (608)
Q Consensus 548 g~~~~A~~~~~~~ 560 (608)
|++++|.+.|++.
T Consensus 106 g~~~eAi~~~~~A 118 (144)
T PRK15359 106 GEPGLAREAFQTA 118 (144)
T ss_pred CCHHHHHHHHHHH
Confidence 6666666666665
No 113
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.49 E-value=3.4e-06 Score=81.36 Aligned_cols=220 Identities=12% Similarity=0.072 Sum_probs=106.8
Q ss_pred HHHhcCChHHHHHHHhhCCCC---ChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHH
Q 007329 342 MYLSFGNREEGEKVFSRMESK---DVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMP-DEITIASVLSACACLGNLDL 417 (608)
Q Consensus 342 ~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~ 417 (608)
-+.+.|++.+|.-.|+...+. +...|.-|.......++-..|+..+.+..+.. | +......|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld--P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD--PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC--CccHHHHHHHHHHHhhhhhHHH
Confidence 345666677777666665542 34456666666666666666766666666642 3 34455556666666666666
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhH--hCC
Q 007329 418 GIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMM--LNL 495 (608)
Q Consensus 418 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~--~~~ 495 (608)
|...++..++..++- .. +... ...++++.- ..+..........++|-++. .+.
T Consensus 372 Al~~L~~Wi~~~p~y-~~----l~~a-~~~~~~~~~-------------------~s~~~~~~l~~i~~~fLeaa~~~~~ 426 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKY-VH----LVSA-GENEDFENT-------------------KSFLDSSHLAHIQELFLEAARQLPT 426 (579)
T ss_pred HHHHHHHHHHhCccc-hh----cccc-CccccccCC-------------------cCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 666666666544221 00 0000 000000000 00000111122233333333 122
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc---CCC-HHHHHHHH
Q 007329 496 KPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN---ERD-VSAWNILL 571 (608)
Q Consensus 496 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~-~~~~~~l~ 571 (608)
.+|+..+..|.-.|.-.|++++|...|+.++...+. |..+||.|+-.++...+.++|+..+.++ +|+ +.++..|.
T Consensus 427 ~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlg 505 (579)
T KOG1125|consen 427 KIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLG 505 (579)
T ss_pred CCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhh
Confidence 244444445555555555555555555555544433 4555555555555555555555555555 343 33444444
Q ss_pred HHHHhcCCHHHHHHHHHH
Q 007329 572 TGYAERGQGALAEEFFRK 589 (608)
Q Consensus 572 ~~~~~~g~~~~A~~~~~~ 589 (608)
-+|...|.+++|.+.|=.
T Consensus 506 IS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 506 ISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred hhhhhhhhHHHHHHHHHH
Confidence 455555555555554443
No 114
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.45 E-value=7.7e-06 Score=78.98 Aligned_cols=214 Identities=15% Similarity=0.123 Sum_probs=142.7
Q ss_pred hhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHcCCCchHHHH
Q 007329 309 ELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMES---KDVVSWTTMISCYEGSVLPDKAVE 385 (608)
Q Consensus 309 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~ 385 (608)
.+.|++.+|.-.|+..++.. +-+...|..|.......++-..|+..+++..+ .|....-.|.-.|...|.-.+|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 45667777777777777664 55667777777777777777777777777665 345566666667888888788888
Q ss_pred HHHHHHHCCCC--------CCHHHHHHHHHHHHccCChHHHHHHHHHH-HHhCCCCchhHHHHHHHHhHhcCCHHHHHHH
Q 007329 386 TYQMMEAEGSM--------PDEITIASVLSACACLGNLDLGIKLHQLA-MRTGLISYIIIANTLIDMYSKCKCIDKALEV 456 (608)
Q Consensus 386 ~~~~m~~~g~~--------p~~~t~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 456 (608)
.++.-.....+ ++...-.. ..+.....+....++|-++ ...+..+|..++..|.-.|.-.|++++|...
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 88776554211 00000000 1111112233344444443 3455557888888888888889999999999
Q ss_pred HccCCC--C-CcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHH
Q 007329 457 FHQIPD--K-NVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSV-TLVSILSACARIGALMCGKEIHAHAL 526 (608)
Q Consensus 457 ~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~ 526 (608)
|+.... | |...||-|...++...+.++|+..|++.+ .++|+.+ ....|.-.|...|.+++|.+.|=.++
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rAL-qLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRAL-QLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHH-hcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 987763 3 55788888888888888888888888887 6666543 45566667778888888777666554
No 115
>PLN02789 farnesyltranstransferase
Probab=98.44 E-value=0.00015 Score=68.45 Aligned_cols=218 Identities=13% Similarity=0.014 Sum_probs=143.0
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhc
Q 007329 370 MISCYEGSVLPDKAVETYQMMEAEGSMPDEI-TIASVLSACACLG-NLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKC 447 (608)
Q Consensus 370 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 447 (608)
+-..+...++.++|+.+..++++. .|+.. .|..--..+...| ++++++..++.+.+.+ +-+..+|+.-...+.+.
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l 119 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHc
Confidence 334455667788888888888775 34443 3444444445555 5688888888888766 33444555444444455
Q ss_pred CCH--HHHHHHHccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhcc---Cc----H
Q 007329 448 KCI--DKALEVFHQIPD---KNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARI---GA----L 515 (608)
Q Consensus 448 g~~--~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~---~~----~ 515 (608)
|+. +++..+++++.+ .|...|+.....+...|+++++++.++++++.-+-|...|+.....+.+. |. .
T Consensus 120 ~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 120 GPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred CchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccH
Confidence 542 566777766653 45677888888888888899999999998844455666666655555443 22 2
Q ss_pred HHHHHHHHHHHHhCCCCCccHHHHHHHHhHhc----CCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcC---------
Q 007329 516 MCGKEIHAHALRIGVAFDGFLPNALLDMYVRC----GRMKPAWNQFNSN----ERDVSAWNILLTGYAERG--------- 578 (608)
Q Consensus 516 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g--------- 578 (608)
++..++...+++..+. +...|+.+..+|... ++..+|.+.+.+. .........|+..|....
T Consensus 200 e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~ 278 (320)
T PLN02789 200 DSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDT 278 (320)
T ss_pred HHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhh
Confidence 4567777777777766 778888888888773 3456677777776 335667777887776532
Q ss_pred ---------CHHHHHHHHHHHH
Q 007329 579 ---------QGALAEEFFRKMI 591 (608)
Q Consensus 579 ---------~~~~A~~~~~~m~ 591 (608)
..++|.++++.+.
T Consensus 279 ~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 279 VDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred hhccccccccHHHHHHHHHHHH
Confidence 3467888888883
No 116
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.44 E-value=2.8e-05 Score=67.83 Aligned_cols=150 Identities=15% Similarity=0.012 Sum_probs=99.5
Q ss_pred HHHHhHhcCCHHHHHHHHccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHH
Q 007329 440 LIDMYSKCKCIDKALEVFHQIPD---KNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALM 516 (608)
Q Consensus 440 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~ 516 (608)
+-..+.-.|+-+....+...... .|.......+....+.|++.+|+..+++....-++|..+|+.+.-+|.+.|+.+
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~ 151 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFD 151 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChh
Confidence 34445555666666555555332 233344446667777777777777777777666777777777777777777777
Q ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007329 517 CGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKM 590 (608)
Q Consensus 517 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 590 (608)
+|..-|.++.+..+. ++..++.|.-.|.-.|+.+.|..++... ..|...-..|.......|++++|..+...-
T Consensus 152 ~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 152 EARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred HHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 777777777776554 5666677777777777777777777766 336666667777777777777777665443
No 117
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.40 E-value=0.00017 Score=68.76 Aligned_cols=198 Identities=13% Similarity=0.067 Sum_probs=131.9
Q ss_pred ChHHHHHHHhhCCC------CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 007329 348 NREEGEKVFSRMES------KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKL 421 (608)
Q Consensus 348 ~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 421 (608)
++.++...-+.+.. ++...+...+.+.........+..++.+-.+. .-...-|..-+ .+...|+++.|+..
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~-~~~~~~~~d~A~~~ 328 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRAL-QTYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHH-HHHHhcccchHHHH
Confidence 45555555555543 45555555555444433333333333222221 11223333333 34567888899999
Q ss_pred HHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC--CC-cccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCC
Q 007329 422 HQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPD--KN-VISWTSIILGLRLNNRSFEALIFFRKMMLNLKPN 498 (608)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~ 498 (608)
++.+++.. +-|........+.+.+.++..+|.+.++++.. |+ ...+-.+..+|.+.|++.+|+.++++.....+-|
T Consensus 329 l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~d 407 (484)
T COG4783 329 LQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPED 407 (484)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Confidence 88877654 55666677778888899999999999988874 44 4566677888889999999999988888777778
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHH
Q 007329 499 SVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAW 567 (608)
Q Consensus 499 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~ 567 (608)
+..|..|..+|...|+..++..-. .+.|...|+++.|...+... +.+..+|
T Consensus 408 p~~w~~LAqay~~~g~~~~a~~A~------------------AE~~~~~G~~~~A~~~l~~A~~~~~~~~~~~ 462 (484)
T COG4783 408 PNGWDLLAQAYAELGNRAEALLAR------------------AEGYALAGRLEQAIIFLMRASQQVKLGFPDW 462 (484)
T ss_pred chHHHHHHHHHHHhCchHHHHHHH------------------HHHHHhCCCHHHHHHHHHHHHHhccCCcHHH
Confidence 888999999999888877765443 35567788888888888766 4454444
No 118
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.39 E-value=0.0026 Score=61.55 Aligned_cols=145 Identities=8% Similarity=0.082 Sum_probs=100.5
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC-----CCcccHHHHHHHHHhCCCchHHHHHHH
Q 007329 415 LDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPD-----KNVISWTSIILGLRLNNRSFEALIFFR 489 (608)
Q Consensus 415 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~ 489 (608)
.+....+++.+...-...-..+|-.+++...+..-+..|+.+|.+..+ .++..+++++.-+|. ++..-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 445555565555432222234566677777778888888888888773 255666777766664 56777888888
Q ss_pred HhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCC--ccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 490 KMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFD--GFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 490 ~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
--+.....++.-....+.-+...++-..+..+|++....++.|| ..+|..+++-=..-|++..+.++-++.
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 77755555555556667777778888888888888887766555 467888888777888888888877766
No 119
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.39 E-value=6.3e-06 Score=68.19 Aligned_cols=109 Identities=12% Similarity=0.043 Sum_probs=92.6
Q ss_pred HHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----C
Q 007329 486 IFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----E 561 (608)
Q Consensus 486 ~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~ 561 (608)
.++++.+ .+.|+. +..+..++...|++++|...++.+....+. +...+..+..++.+.|++++|...|+++ +
T Consensus 14 ~~~~~al-~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 14 DILKQLL-SVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHH-HcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 4455554 344553 556788889999999999999999987766 7888899999999999999999999998 5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 562 RDVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 562 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
.+...|..+..++...|++++|.+.|++.++. .|++.
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--~p~~~ 126 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--SYADA 126 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCh
Confidence 57889999999999999999999999999885 77764
No 120
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=7.5e-05 Score=65.20 Aligned_cols=141 Identities=13% Similarity=0.131 Sum_probs=82.2
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCC-cccHHHHHHHHHh----CC
Q 007329 405 VLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKN-VISWTSIILGLRL----NN 479 (608)
Q Consensus 405 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~l~~~~~~----~~ 479 (608)
-...|+..|++++|.+..... -+......=+..+.|..+++-|...+++|.+-| ..+.+-|..++.+ .+
T Consensus 114 aa~i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~gge 187 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGE 187 (299)
T ss_pred hhHHhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccch
Confidence 344566666666666655431 112222222344556666677777777766533 3444445444432 34
Q ss_pred CchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHH
Q 007329 480 RSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKP 552 (608)
Q Consensus 480 ~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 552 (608)
...+|.-+|++|..+.+|+..+.+..+.++...|++++|..+++.+...... ++.+...++..-...|.-.+
T Consensus 188 k~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAE 259 (299)
T ss_pred hhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChH
Confidence 4667777777777557777777777777777777777777777777765554 45555555544445554433
No 121
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.38 E-value=6.6e-06 Score=81.57 Aligned_cols=210 Identities=13% Similarity=0.096 Sum_probs=170.9
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcC
Q 007329 369 TMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCK 448 (608)
Q Consensus 369 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 448 (608)
.+...+...|-...|..+++++. .+..++..|+..|+..+|..+.....+ -+|+...|..+.+......
T Consensus 403 ~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChH
Confidence 45567788888899999988764 466778889999999999999887776 3789999999999988888
Q ss_pred CHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 007329 449 CIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRI 528 (608)
Q Consensus 449 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 528 (608)
-+++|.++++..... .-..+.......++++++.+.|+.-.+-.+--..+|-.+..+..+.++++.|.+.|......
T Consensus 472 ~yEkawElsn~~sar---A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL 548 (777)
T KOG1128|consen 472 LYEKAWELSNYISAR---AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL 548 (777)
T ss_pred HHHHHHHHhhhhhHH---HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc
Confidence 899999999875432 11111122234789999999999887444456778888888889999999999999998886
Q ss_pred CCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 529 GVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 529 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
.+. +...||.+-.+|.+.|+-.+|...++++ ..+...|...+-...+.|.+++|++.+.++.+.
T Consensus 549 ~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 549 EPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred CCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 655 6788999999999999999999999998 445667888888899999999999999998754
No 122
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.35 E-value=8.3e-05 Score=79.19 Aligned_cols=194 Identities=11% Similarity=0.069 Sum_probs=90.1
Q ss_pred CcccchHHHHHHHhcCChHHHHHHHhhCCC--------CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHH
Q 007329 332 DVSVCNPLIKMYLSFGNREEGEKVFSRMES--------KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIA 403 (608)
Q Consensus 332 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~ 403 (608)
....|-..|......++.++|.+++++... .-...|.++++.-..-|.-+...++|++..+.- -....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 344455555555666666666666655543 112345455444444444455555555555431 1122344
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchH
Q 007329 404 SVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFE 483 (608)
Q Consensus 404 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 483 (608)
.|...|.+.+..++|.++++.|.+.- .-...+|...++.+.+..+-+.|.+++.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~------------------------- 1588 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLK------------------------- 1588 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHH-------------------------
Confidence 45555555555555555555555322 1333444444444444444444444444
Q ss_pred HHHHHHHhHhCCCC--CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 484 ALIFFRKMMLNLKP--NSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 484 A~~~~~~m~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
+.+.-++- ......-.+..-.+.|+.+++..+|+.....-++ -...|+.+++.=.+.|+.+.++.+|+++
T Consensus 1589 ------rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRv 1660 (1710)
T KOG1070|consen 1589 ------RALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERV 1660 (1710)
T ss_pred ------HHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 44311111 1111222223333445555555555554443333 3445555555555555555555555554
No 123
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.32 E-value=0.00026 Score=74.76 Aligned_cols=148 Identities=11% Similarity=0.028 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCC
Q 007329 400 ITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNN 479 (608)
Q Consensus 400 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 479 (608)
..+..+..+|-+.|+.+++..+++++.+.. +.++.+.|-+...|... ++++|.+++.+. +..+...+
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA-----------V~~~i~~k 183 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA-----------IYRFIKKK 183 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH-----------HHHHHhhh
Confidence 355556666666666666666666666655 55556666666666666 666666665542 23355555
Q ss_pred CchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHh
Q 007329 480 RSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNS 559 (608)
Q Consensus 480 ~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 559 (608)
++.++.++|.++....+.+...+..+++.....- |..--..++-.+...|-..++|+++..+++.
T Consensus 184 q~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~---------------~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~ 248 (906)
T PRK14720 184 QYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHR---------------EFTRLVGLLEDLYEPYKALEDWDEVIYILKK 248 (906)
T ss_pred cchHHHHHHHHHHhcCcccchHHHHHHHHHHhhh---------------ccchhHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 6666666666666333333322222222221111 1111122333344555555666666666666
Q ss_pred c----CCCHHHHHHHHHHHH
Q 007329 560 N----ERDVSAWNILLTGYA 575 (608)
Q Consensus 560 ~----~~~~~~~~~l~~~~~ 575 (608)
+ +.|.....-++..|.
T Consensus 249 iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 249 ILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHhcCCcchhhHHHHHHHHH
Confidence 5 334444455555544
No 124
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.32 E-value=4.5e-05 Score=66.87 Aligned_cols=113 Identities=12% Similarity=0.060 Sum_probs=81.8
Q ss_pred cCCHHHHHHHHccCC---CCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHH-hccCc--HHHHHH
Q 007329 447 CKCIDKALEVFHQIP---DKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSAC-ARIGA--LMCGKE 520 (608)
Q Consensus 447 ~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~-~~~~~--~~~a~~ 520 (608)
.++.+++...++... ..|...|..+...|...|++++|...|++...-.+.+...+..+..++ ...|+ .++|.+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 445555555555543 235567777777888888888888888877744445666777777764 56666 488888
Q ss_pred HHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 521 IHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 521 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
+++++.+.++. +...+..+...+...|++++|...|+++
T Consensus 132 ~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 132 MIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888887766 6777778888888888888888888887
No 125
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.30 E-value=5.1e-05 Score=66.30 Aligned_cols=156 Identities=13% Similarity=0.004 Sum_probs=113.3
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC---CCcccHHHHHHHHHhCC
Q 007329 403 ASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPD---KNVISWTSIILGLRLNN 479 (608)
Q Consensus 403 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~ 479 (608)
..+-..+...|+-+....+........ +.+......++....+.|++..|...|.+... +|...|+.+..+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 444455555666666655555433222 34445555677777888888888888887764 45678888888888888
Q ss_pred CchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHh
Q 007329 480 RSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNS 559 (608)
Q Consensus 480 ~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 559 (608)
++++|..-|.+..+-.+-+...++.+...+.-.|+++.|..++......+.. |..+-..|..+....|++++|.++...
T Consensus 149 r~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 149 RFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred ChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhccc
Confidence 8888888888888445556677888888888889999999888888776554 666677788888888999999887765
Q ss_pred c
Q 007329 560 N 560 (608)
Q Consensus 560 ~ 560 (608)
-
T Consensus 228 e 228 (257)
T COG5010 228 E 228 (257)
T ss_pred c
Confidence 4
No 126
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.29 E-value=1.8e-05 Score=65.15 Aligned_cols=109 Identities=7% Similarity=-0.029 Sum_probs=77.3
Q ss_pred HHHhHhCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CC
Q 007329 488 FRKMMLNLKP-NSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ER 562 (608)
Q Consensus 488 ~~~m~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~ 562 (608)
+++.. ...| +......+...+...|++++|.+.++.+.+.++. +...+..+...|.+.|++++|...++.+ +.
T Consensus 6 ~~~~l-~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 6 LKDLL-GLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred HHHHH-cCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44444 3334 3445566667777788888888888887776544 6667777788888888888888887776 44
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 563 DVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 563 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
+...|..+...|...|++++|...|++..+. .|+..
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~ 119 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEI--CGENP 119 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--ccccc
Confidence 5677777778888888888888888888775 45544
No 127
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.28 E-value=0.00014 Score=69.35 Aligned_cols=136 Identities=20% Similarity=0.103 Sum_probs=113.9
Q ss_pred HhHhcCCHHHHHHHHccCC--C-CCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCC-HHHHHHHHHHHhccCcHHHH
Q 007329 443 MYSKCKCIDKALEVFHQIP--D-KNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPN-SVTLVSILSACARIGALMCG 518 (608)
Q Consensus 443 ~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~-~~~~~~ll~~~~~~~~~~~a 518 (608)
.+...|++++|+..++.+. . .|+..+......+.+.|+..+|.+.+++++ ...|+ ......+..++.+.|++++|
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal-~l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKAL-ALDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH-hcCCCccHHHHHHHHHHHhcCChHHH
Confidence 3556789999999999876 2 456677777889999999999999999999 44454 66777888999999999999
Q ss_pred HHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 519 KEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSNERDVSAWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 519 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
..+++......+. |+..|..|..+|...|+..+|.... ..+|...|+++.|.+.+....+.
T Consensus 394 i~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~-------------AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 394 IRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLAR-------------AEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHH-------------HHHHHhCCCHHHHHHHHHHHHHh
Confidence 9999999887666 8999999999999999999886544 45778889999999998888776
No 128
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.24 E-value=2.5e-05 Score=75.07 Aligned_cols=124 Identities=17% Similarity=0.146 Sum_probs=94.3
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcH
Q 007329 436 IANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGAL 515 (608)
Q Consensus 436 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~ 515 (608)
....|+..+...++++.|..+|+++.+.++.....++..+...++-.+|++++++.+...+-+...+..-...|.+.+++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 34455566666778888888888888766666666777777777778888888888855555666676677778888888
Q ss_pred HHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 516 MCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 516 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
+.|+++.+++.+..+. +..+|..|..+|.+.|+++.|+..++.+
T Consensus 251 ~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 251 ELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 8888888888876555 5668888888888888888888887665
No 129
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.23 E-value=0.0097 Score=61.36 Aligned_cols=219 Identities=10% Similarity=0.017 Sum_probs=130.9
Q ss_pred HHHhCCChHHHHHHHHHHhhcCCCCChhhHHHHHHH--hhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhhcCCh
Q 007329 69 ELCLNGSLEQALKYLDSMQELNICVDEDALVNLVRL--CEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFGDL 146 (608)
Q Consensus 69 ~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 146 (608)
.....+++..|+....++.+.. |+ ..|..++.+ +.+.|..++|..+++.....+.. |..+...+-..|.+.|+.
T Consensus 18 d~ld~~qfkkal~~~~kllkk~--Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKKH--PN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHHC--CC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhh
Confidence 4456678888888888876633 33 334444553 35778888888777776666655 777777888888888888
Q ss_pred hhHHHHHcccCC--CCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCC-C---------hh
Q 007329 147 GHAWYVFGKMCD--RDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVP-D---------LK 214 (608)
Q Consensus 147 ~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~-~---------~~ 214 (608)
++|..++++... |+..-...+..+|.+.+.+.+-.+.--++.+. ++-+.+.|=.++....... . ..
T Consensus 94 d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~--~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 94 DEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN--FPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred hHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 888888888855 44333444555667776666544444444432 3445555555555443221 1 12
Q ss_pred hHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcCCHHHHHHHHc-----cCCCCCHhHHHHHHHHHHhcCChhHHHHHHHH
Q 007329 215 RGKEVHVHVIRFG-YEADVDVVNALITMYVKCGDLVRARLVFD-----GMPKRDRISWNAMISGYFENGEYMKGLMLFIM 288 (608)
Q Consensus 215 ~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~-----~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 288 (608)
-|.+..+.+++.+ ..-+..-...-...+...|++++|.+++. ....-+...-+.-+..+...++|.+..++-.+
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 3455555555544 21122222223334456677888888773 22223444555566777777888888888877
Q ss_pred HHHCC
Q 007329 289 MREVL 293 (608)
Q Consensus 289 m~~~~ 293 (608)
+...|
T Consensus 252 Ll~k~ 256 (932)
T KOG2053|consen 252 LLEKG 256 (932)
T ss_pred HHHhC
Confidence 77765
No 130
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.22 E-value=8.5e-05 Score=67.96 Aligned_cols=59 Identities=19% Similarity=0.014 Sum_probs=30.1
Q ss_pred cchHHHHHHHhcCChHHHHHHHhhCCC--CC-h---hhHHHHHHHHHcCCCchHHHHHHHHHHHC
Q 007329 335 VCNPLIKMYLSFGNREEGEKVFSRMES--KD-V---VSWTTMISCYEGSVLPDKAVETYQMMEAE 393 (608)
Q Consensus 335 ~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 393 (608)
.+..+...+...|++++|...|+++.. |+ . ..+..+..++.+.|++++|...++++.+.
T Consensus 35 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~ 99 (235)
T TIGR03302 35 ELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL 99 (235)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 344455555555566666555555443 21 1 23344445555555555555555555543
No 131
>PLN02789 farnesyltranstransferase
Probab=98.20 E-value=0.00032 Score=66.24 Aligned_cols=187 Identities=12% Similarity=0.046 Sum_probs=139.3
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcC-CHHHHHHHHccCCC---CCcccHHHHHHHHHhCCC
Q 007329 405 VLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCK-CIDKALEVFHQIPD---KNVISWTSIILGLRLNNR 480 (608)
Q Consensus 405 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 480 (608)
+-..+...+..++|+.+.+.+++.+ +-+..+|+.-..++.+.| .+++++..++++.+ ++...|+.....+.+.|+
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~ 121 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGP 121 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCc
Confidence 3334445678889999999988766 444455665555666667 67999999988774 344567766666666666
Q ss_pred c--hHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhc---CCH----H
Q 007329 481 S--FEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRC---GRM----K 551 (608)
Q Consensus 481 ~--~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~----~ 551 (608)
. ++++++++++++.-+-|..+|.....++...|+++++++.++++++.++. +...|+....++.+. |+. +
T Consensus 122 ~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 122 DAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred hhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHH
Confidence 3 67899999998666678899999999999999999999999999998877 777888777666554 333 4
Q ss_pred HHHHHHHhc----CCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHc
Q 007329 552 PAWNQFNSN----ERDVSAWNILLTGYAER----GQGALAEEFFRKMIDS 593 (608)
Q Consensus 552 ~A~~~~~~~----~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~m~~~ 593 (608)
++.+...++ +.|...|+-+...+... ++..+|.+.+.+..+.
T Consensus 201 ~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~ 250 (320)
T PLN02789 201 SELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK 250 (320)
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc
Confidence 666766555 55788999888888773 4456788888887664
No 132
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.19 E-value=0.00015 Score=75.65 Aligned_cols=140 Identities=8% Similarity=-0.018 Sum_probs=91.0
Q ss_pred CCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC--CC-cccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHH
Q 007329 430 LISYIIIANTLIDMYSKCKCIDKALEVFHQIPD--KN-VISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSIL 506 (608)
Q Consensus 430 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll 506 (608)
...+...+..|..+..+.|+.++|..+++...+ |+ ...+..+...+.+.+++++|+..+++....-+-+......+.
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a 161 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA 161 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 344566666677777777777777777776653 32 345555666777777777777777777744455556666666
Q ss_pred HHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHH
Q 007329 507 SACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNIL 570 (608)
Q Consensus 507 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l 570 (608)
.++.+.|++++|..+|+++...++. +...+..+..++...|+.++|...|+++ .+....|+.+
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~ 228 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRR 228 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHH
Confidence 6777777777777777777763332 3566666777777777777777777766 4444444444
No 133
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.17 E-value=8.5e-05 Score=61.78 Aligned_cols=113 Identities=13% Similarity=0.072 Sum_probs=71.5
Q ss_pred CCCchHHHHHHHHhHhCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCc--cHHHHHHHHhHhcCCHHH
Q 007329 478 NNRSFEALIFFRKMMLNLKPN---SVTLVSILSACARIGALMCGKEIHAHALRIGVAFDG--FLPNALLDMYVRCGRMKP 552 (608)
Q Consensus 478 ~~~~~~A~~~~~~m~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~ 552 (608)
.++...+...++.+....+.+ ......+...+...|++++|...|+.+.+....+.. .....|..++...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 566666666666666333333 223334556667777777777777777766533321 233346667777788888
Q ss_pred HHHHHHhc---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007329 553 AWNQFNSN---ERDVSAWNILLTGYAERGQGALAEEFFRKM 590 (608)
Q Consensus 553 A~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 590 (608)
|+..++.+ ...+..+......|.+.|++++|...|++.
T Consensus 104 Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 88887776 223455666777778888888888777754
No 134
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=0.00047 Score=60.36 Aligned_cols=150 Identities=11% Similarity=0.003 Sum_probs=83.6
Q ss_pred HHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhh----cCC
Q 007329 238 LITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASEL----VGD 313 (608)
Q Consensus 238 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~ 313 (608)
-...|+..|++++|++...... +....-.=+..+.+..+++-|.+.+++|.+. -+..|.+.|..++.+ .+.
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek 188 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEK 188 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchh
Confidence 3444666666666666666522 2333333344455666666666666666653 244555555555443 234
Q ss_pred hhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCCC---ChhhHHHHHHHHHcCCCc-hHHHHHHHH
Q 007329 314 EKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESK---DVVSWTTMISCYEGSVLP-DKAVETYQM 389 (608)
Q Consensus 314 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~-~~a~~~~~~ 389 (608)
...|.-+|++|-+. .+|+..+.+....++...|++++|..++++...+ +..+...++-+-...|.. +-..+.+.+
T Consensus 189 ~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~Q 267 (299)
T KOG3081|consen 189 IQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQ 267 (299)
T ss_pred hhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 66666677766543 3666777777777777777777777777776652 333433333333334433 334455555
Q ss_pred HHHC
Q 007329 390 MEAE 393 (608)
Q Consensus 390 m~~~ 393 (608)
+...
T Consensus 268 Lk~~ 271 (299)
T KOG3081|consen 268 LKLS 271 (299)
T ss_pred HHhc
Confidence 5544
No 135
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.14 E-value=0.00013 Score=76.21 Aligned_cols=197 Identities=10% Similarity=-0.056 Sum_probs=138.1
Q ss_pred HHHcCCCchHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCH
Q 007329 373 CYEGSVLPDKAVETYQMMEA--EGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCI 450 (608)
Q Consensus 373 ~~~~~~~~~~a~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 450 (608)
...+.+....+.+-+-+++. .....+...+..|.....+.|.+++|..+++...+.. +.+......+...+.+.+++
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~ 136 (694)
T PRK15179 58 VLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGI 136 (694)
T ss_pred HHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccH
Confidence 34445555555444444432 2345568888888899999999999999999888765 44455666778888999999
Q ss_pred HHHHHHHccCCCCCc---ccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 007329 451 DKALEVFHQIPDKNV---ISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALR 527 (608)
Q Consensus 451 ~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 527 (608)
++|+...++..+.++ .....+..++.+.|++++|.++|++.....+-+..++..+..++...|+.++|...|+.+.+
T Consensus 137 eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 137 EAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999998875433 45666778889999999999999999864445578899999999999999999999998886
Q ss_pred hCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhcCC---------CHHHHHHHHHHHHhc
Q 007329 528 IGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSNER---------DVSAWNILLTGYAER 577 (608)
Q Consensus 528 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~l~~~~~~~ 577 (608)
..- +....|+.+ .+++..-...+++..+ ........+..|.+.
T Consensus 217 ~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 217 AIG-DGARKLTRR------LVDLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred hhC-cchHHHHHH------HHHHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 532 223333332 2455555566666611 234455566555543
No 136
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.14 E-value=0.0098 Score=57.75 Aligned_cols=180 Identities=13% Similarity=0.105 Sum_probs=133.1
Q ss_pred chHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCC-chhHHHHHHHHhHhcCCHHHHHHHHc
Q 007329 380 PDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLIS-YIIIANTLIDMYSKCKCIDKALEVFH 458 (608)
Q Consensus 380 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~ 458 (608)
.+....+++++...-..--..+|..+++...+..-+..|..+|.++.+.+..+ .+.++++++.-|| .++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 56667777777654322233567788888888889999999999999887666 7888888888766 678899999999
Q ss_pred cCCC--CC-cccHHHHHHHHHhCCCchHHHHHHHHhH-hCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHHh-C--
Q 007329 459 QIPD--KN-VISWTSIILGLRLNNRSFEALIFFRKMM-LNLKPN--SVTLVSILSACARIGALMCGKEIHAHALRI-G-- 529 (608)
Q Consensus 459 ~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~-~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~-- 529 (608)
--.+ +| +.--...++-+...|+-..|..+|++.. .++.|+ ...|..++.--...|++..+.++-++.... .
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence 6553 33 3444567788888999999999999999 545654 468999999999999999999988866532 1
Q ss_pred CCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 530 VAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 530 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
..+....-..+++.|.=.+.+.--..-++.+
T Consensus 506 qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 506 QEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred hcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 3444445556777777666665544444444
No 137
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.11 E-value=4.9e-06 Score=49.60 Aligned_cols=34 Identities=32% Similarity=0.550 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh
Q 007329 265 SWNAMISGYFENGEYMKGLMLFIMMREVLVDPDF 298 (608)
Q Consensus 265 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 298 (608)
+||.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6888888888888888888888888888888873
No 138
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.11 E-value=0.00085 Score=71.00 Aligned_cols=80 Identities=14% Similarity=0.195 Sum_probs=37.8
Q ss_pred hHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCC
Q 007329 199 TFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGE 278 (608)
Q Consensus 199 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 278 (608)
.+..+..+|-+.|+.+++..+++++++.. +.|+.+.|.+...|... ++++|++++.+. +..+...++
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA-----------V~~~i~~kq 184 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA-----------IYRFIKKKQ 184 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH-----------HHHHHhhhc
Confidence 34444444444444444444444444444 33444555555555555 555555544332 222444445
Q ss_pred hhHHHHHHHHHHH
Q 007329 279 YMKGLMLFIMMRE 291 (608)
Q Consensus 279 ~~~a~~~~~~m~~ 291 (608)
+.++.+++.++..
T Consensus 185 ~~~~~e~W~k~~~ 197 (906)
T PRK14720 185 YVGIEEIWSKLVH 197 (906)
T ss_pred chHHHHHHHHHHh
Confidence 5555555555544
No 139
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.08 E-value=8e-05 Score=71.69 Aligned_cols=123 Identities=15% Similarity=0.137 Sum_probs=85.5
Q ss_pred hHHHHHhhhcCChhhHHHHHcccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCCh
Q 007329 134 NAFLSMFVKFGDLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDL 213 (608)
Q Consensus 134 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~ 213 (608)
..|+..+...++++.|..+|+++.+.++.....++..+...++..+|++++++..+.. +-|...+..-.+.|.+.++.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~--p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN--PQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCH
Confidence 4445555566778888888888877666666677777777777778888888777543 44555555555667777777
Q ss_pred hhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCC
Q 007329 214 KRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMP 259 (608)
Q Consensus 214 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 259 (608)
+.|+++.+++.+.. +.+..+|..|..+|.+.|+++.|+-.++.++
T Consensus 251 ~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 251 ELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 77777777777663 3344577777777777777777777777665
No 140
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.07 E-value=7.6e-06 Score=48.77 Aligned_cols=34 Identities=24% Similarity=0.378 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc
Q 007329 566 AWNILLTGYAERGQGALAEEFFRKMIDSKGNWRK 599 (608)
Q Consensus 566 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 599 (608)
+|++++.+|.+.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 7999999999999999999999999999999983
No 141
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=0.00064 Score=59.12 Aligned_cols=182 Identities=11% Similarity=0.039 Sum_probs=94.7
Q ss_pred CCCchHHHHHHHHHHHC---C-CCCCHHH-HHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHH
Q 007329 377 SVLPDKAVETYQMMEAE---G-SMPDEIT-IASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCID 451 (608)
Q Consensus 377 ~~~~~~a~~~~~~m~~~---g-~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 451 (608)
..+.++..+++.++... | ..++..+ |..+.-+....|+.+.|...++.+.+.- +-+..+...-...+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 44566777776666532 3 3444433 3444555556666666666666655443 222222222222234456666
Q ss_pred HHHHHHccCCCCCc---ccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 007329 452 KALEVFHQIPDKNV---ISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRI 528 (608)
Q Consensus 452 ~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 528 (608)
+|.++++.+.+.|+ +++---+......|+.-+|++-+.+-...+..|...|.-+...|...|+++.|.-.++++.=.
T Consensus 104 ~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred hHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 66666666654332 333333444445555556665555555555566666666666666666666666666665543
Q ss_pred CCCCCccHHHHHHHHhHhcC---CHHHHHHHHHhc
Q 007329 529 GVAFDGFLPNALLDMYVRCG---RMKPAWNQFNSN 560 (608)
Q Consensus 529 ~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~ 560 (608)
.+. ++..+..+.+.+.-.| +++-|.+.+.+.
T Consensus 184 ~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~a 217 (289)
T KOG3060|consen 184 QPF-NPLYFQRLAEVLYTQGGAENLELARKYYERA 217 (289)
T ss_pred CCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 332 3444444555443333 344455555555
No 142
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.01 E-value=1.1e-05 Score=47.65 Aligned_cols=33 Identities=30% Similarity=0.418 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 007329 264 ISWNAMISGYFENGEYMKGLMLFIMMREVLVDP 296 (608)
Q Consensus 264 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 296 (608)
.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467888888888888888888888888777766
No 143
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.98 E-value=1.5e-05 Score=47.01 Aligned_cols=33 Identities=24% Similarity=0.309 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 007329 565 SAWNILLTGYAERGQGALAEEFFRKMIDSKGNW 597 (608)
Q Consensus 565 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 597 (608)
.+|+.++.+|.+.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999988
No 144
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.93 E-value=0.00018 Score=59.15 Aligned_cols=92 Identities=15% Similarity=0.078 Sum_probs=61.3
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhc
Q 007329 468 WTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRC 547 (608)
Q Consensus 468 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 547 (608)
...+...+.+.|++++|.+.|+......+.+...+..+...+...|++++|..+++...+.++. +...+..+...|...
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD-DPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHc
Confidence 3344555666677777777776666434446666677777777777777777777777665533 455566667777777
Q ss_pred CCHHHHHHHHHhc
Q 007329 548 GRMKPAWNQFNSN 560 (608)
Q Consensus 548 g~~~~A~~~~~~~ 560 (608)
|++++|...|++.
T Consensus 99 g~~~~A~~~~~~a 111 (135)
T TIGR02552 99 GEPESALKALDLA 111 (135)
T ss_pred CCHHHHHHHHHHH
Confidence 7777777777766
No 145
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=0.0055 Score=53.55 Aligned_cols=183 Identities=11% Similarity=0.103 Sum_probs=132.0
Q ss_pred hcCChHHHHHHHhhCCC--------CCh-hhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHccCC
Q 007329 345 SFGNREEGEKVFSRMES--------KDV-VSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVL-SACACLGN 414 (608)
Q Consensus 345 ~~~~~~~a~~~~~~~~~--------~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll-~~~~~~~~ 414 (608)
...+.++..+++.++.. ++. ..|..++-+....|+.+.|...++.+...- |.+.-...+= --+...|+
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhc
Confidence 34567888888877754 233 235556667778888999999999988763 4443322222 22445789
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHh
Q 007329 415 LDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPD---KNVISWTSIILGLRLNNRSFEALIFFRKM 491 (608)
Q Consensus 415 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m 491 (608)
+++|.++++.+.+.+ +.|..++..-+.+....|+--+|++-+....+ .|...|.-+...|...|++++|.-.++++
T Consensus 102 ~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 999999999998877 66677777666666667777778777766553 57889999999999999999999999999
Q ss_pred HhCCCCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHHhCC
Q 007329 492 MLNLKPNSVTLVSILSACARIG---ALMCGKEIHAHALRIGV 530 (608)
Q Consensus 492 ~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~ 530 (608)
+--.|-++..+..+...+.-.| +.+-+.+++.+..+...
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 8444446666666666655444 66778889998888654
No 146
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.86 E-value=0.0008 Score=55.92 Aligned_cols=122 Identities=10% Similarity=0.077 Sum_probs=74.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC---cchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCc--hhHHHHH
Q 007329 164 WNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPD---VYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEAD--VDVVNAL 238 (608)
Q Consensus 164 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~l 238 (608)
|..++..+ ..++...+.+.++.+.+.. +.+ ....-.+...+...|++++|...|+...+....++ ......+
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 33344443 3667777777777776643 222 12222344556677777777777777777653332 2234456
Q ss_pred HHHHHhcCCHHHHHHHHccCCCC--CHhHHHHHHHHHHhcCChhHHHHHHHH
Q 007329 239 ITMYVKCGDLVRARLVFDGMPKR--DRISWNAMISGYFENGEYMKGLMLFIM 288 (608)
Q Consensus 239 i~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~ 288 (608)
...+...|++++|+..++..... ....+......|.+.|++++|...|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 67777778888888888765443 344566666777777777777777764
No 147
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.82 E-value=0.00045 Score=55.23 Aligned_cols=98 Identities=13% Similarity=-0.023 Sum_probs=63.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhCCCC--CccHHHHHHHHhHhcCCHHHHHHHHHhc---CCC----HHHHHHHH
Q 007329 501 TLVSILSACARIGALMCGKEIHAHALRIGVAF--DGFLPNALLDMYVRCGRMKPAWNQFNSN---ERD----VSAWNILL 571 (608)
Q Consensus 501 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~----~~~~~~l~ 571 (608)
++..+...+.+.|++++|.+.++.+.+..+.. ....+..++.++.+.|++++|.+.++.+ .|+ ...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 34555566666677777777777666543321 1234455677777777777777777766 333 44566777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 572 TGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 572 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
..+...|+.++|...++++++. .|++.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~--~p~~~ 110 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR--YPGSS 110 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH--CcCCh
Confidence 7777778888888888887775 45443
No 148
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.77 E-value=0.018 Score=57.59 Aligned_cols=197 Identities=13% Similarity=0.007 Sum_probs=93.8
Q ss_pred ChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCCCChhhHHH-------
Q 007329 297 DFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVVSWTT------- 369 (608)
Q Consensus 297 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------- 369 (608)
|....-.+..++.+.|.-++|.+.+-. .+.+ ...+..|...++|.+|.++-+...-|.+.+.-+
T Consensus 851 ~s~llp~~a~mf~svGMC~qAV~a~Lr---~s~p------kaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll 921 (1189)
T KOG2041|consen 851 DSELLPVMADMFTSVGMCDQAVEAYLR---RSLP------KAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLL 921 (1189)
T ss_pred ccchHHHHHHHHHhhchHHHHHHHHHh---ccCc------HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 444455556666677776666655532 2211 345566777777777777777666554443221
Q ss_pred -------HHHHHHcCCCchHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHH
Q 007329 370 -------MISCYEGSVLPDKAVETYQMMEAE----GSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIAN 438 (608)
Q Consensus 370 -------li~~~~~~~~~~~a~~~~~~m~~~----g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 438 (608)
-|..+.+.|..-+|-+++.+|.+. +.+|-..--..++.++.-. +..++..-.+...
T Consensus 922 ~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE-~h~~~ik~~~~~~------------ 988 (1189)
T KOG2041|consen 922 ADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVE-NHRQTIKELRKID------------ 988 (1189)
T ss_pred hhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHH-HHHHHHHHhhhhh------------
Confidence 123344455555555555555432 2222222111222222110 1111111111111
Q ss_pred HHHHHhHhcCCHHHHHHHHccCCC-----------CCcccHH--HHHHHHHhCCCchHHHHHHHHhH--hCCCCCHHHHH
Q 007329 439 TLIDMYSKCKCIDKALEVFHQIPD-----------KNVISWT--SIILGLRLNNRSFEALIFFRKMM--LNLKPNSVTLV 503 (608)
Q Consensus 439 ~li~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~--~l~~~~~~~~~~~~A~~~~~~m~--~~~~p~~~~~~ 503 (608)
+.|..++|..+++...- .....|. .|..-....|..+.|++.--.+. +.+-|....|.
T Consensus 989 -------~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiyS 1061 (1189)
T KOG2041|consen 989 -------KHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYS 1061 (1189)
T ss_pred -------hcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHH
Confidence 23444444444433221 1122333 34444556788888877766666 56667777777
Q ss_pred HHHHHHhccCcHHHHHHHH
Q 007329 504 SILSACARIGALMCGKEIH 522 (608)
Q Consensus 504 ~ll~~~~~~~~~~~a~~~~ 522 (608)
.+.-+-+....+...-+.|
T Consensus 1062 llALaaca~raFGtCSKAf 1080 (1189)
T KOG2041|consen 1062 LLALAACAVRAFGTCSKAF 1080 (1189)
T ss_pred HHHHHHhhhhhhhhhHHHH
Confidence 6665555444444443333
No 149
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.76 E-value=0.0012 Score=53.93 Aligned_cols=98 Identities=11% Similarity=0.022 Sum_probs=70.8
Q ss_pred CCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHH
Q 007329 462 DKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALL 541 (608)
Q Consensus 462 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 541 (608)
+.+......+...+...|++++|..+|+-...--+-+..-|..|..+|-..|++++|...+..+...++. |+..+-.+.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag 110 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHH
Confidence 3333444555666777888888888888777333445556667777777778888888888888877764 777777788
Q ss_pred HHhHhcCCHHHHHHHHHhc
Q 007329 542 DMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 542 ~~~~~~g~~~~A~~~~~~~ 560 (608)
.+|.+.|+.+.|.+.|+.+
T Consensus 111 ~c~L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAV 129 (157)
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 8888888888888877765
No 150
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.73 E-value=4.3e-05 Score=43.89 Aligned_cols=30 Identities=37% Similarity=0.661 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 007329 265 SWNAMISGYFENGEYMKGLMLFIMMREVLV 294 (608)
Q Consensus 265 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 294 (608)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 677777777777777777777777777653
No 151
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.71 E-value=0.00011 Score=54.35 Aligned_cols=77 Identities=13% Similarity=0.091 Sum_probs=36.0
Q ss_pred CcHHHHHHHHHHHHHhCCC-CCccHHHHHHHHhHhcCCHHHHHHHHHhc---CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007329 513 GALMCGKEIHAHALRIGVA-FDGFLPNALLDMYVRCGRMKPAWNQFNSN---ERDVSAWNILLTGYAERGQGALAEEFFR 588 (608)
Q Consensus 513 ~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 588 (608)
|+++.|+.+++++.+..+. ++...+-.+..+|.+.|++++|.+++++. ..+......+..+|...|++++|++.++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 4455555555555544332 12333333455555555555555555443 1122333344555555566666655555
Q ss_pred H
Q 007329 589 K 589 (608)
Q Consensus 589 ~ 589 (608)
+
T Consensus 83 ~ 83 (84)
T PF12895_consen 83 K 83 (84)
T ss_dssp H
T ss_pred c
Confidence 4
No 152
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.69 E-value=4.6e-05 Score=43.77 Aligned_cols=31 Identities=32% Similarity=0.428 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 007329 565 SAWNILLTGYAERGQGALAEEFFRKMIDSKG 595 (608)
Q Consensus 565 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 595 (608)
++|++++++|.+.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3789999999999999999999999988764
No 153
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.68 E-value=0.00046 Score=52.38 Aligned_cols=87 Identities=17% Similarity=0.203 Sum_probs=47.9
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCH
Q 007329 505 ILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQG 580 (608)
Q Consensus 505 ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~ 580 (608)
+...+...|++++|...++++.+.... +...+..+...+...|++++|.+.++.. +.+...+..+...+...|++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhH
Confidence 344444455555555555555443322 2234444555555666666666666554 23344566666666666666
Q ss_pred HHHHHHHHHHHH
Q 007329 581 ALAEEFFRKMID 592 (608)
Q Consensus 581 ~~A~~~~~~m~~ 592 (608)
+.|...+++..+
T Consensus 85 ~~a~~~~~~~~~ 96 (100)
T cd00189 85 EEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHHc
Confidence 666666666654
No 154
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.67 E-value=0.053 Score=51.27 Aligned_cols=119 Identities=18% Similarity=0.216 Sum_probs=83.7
Q ss_pred HHHHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHH
Q 007329 438 NTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMC 517 (608)
Q Consensus 438 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~ 517 (608)
+.-+.-+...|+...|.++-.+..=|+-.-|...+.+|+..+++++-.++... +-+++-|..++.+|.+.|...+
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s-----kKsPIGyepFv~~~~~~~~~~e 255 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS-----KKSPIGYEPFVEACLKYGNKKE 255 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC-----CCCCCChHHHHHHHHHCCCHHH
Confidence 44455566778888888888888878888888888888888888876665432 2344778888888888888888
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhcCCCHHHHHHHHH
Q 007329 518 GKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSNERDVSAWNILLT 572 (608)
Q Consensus 518 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~l~~ 572 (608)
|..++.++ .+..-+..|.++|++.+|.+.-.+ ..|...+..+..
T Consensus 256 A~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~-~kd~~~L~~i~~ 299 (319)
T PF04840_consen 256 ASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFK-EKDIDLLKQILK 299 (319)
T ss_pred HHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHH-cCCHHHHHHHHH
Confidence 88887761 124567888888888888665443 234444444433
No 155
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.66 E-value=0.089 Score=53.52 Aligned_cols=76 Identities=12% Similarity=0.046 Sum_probs=35.3
Q ss_pred HhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 007329 443 MYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIH 522 (608)
Q Consensus 443 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 522 (608)
-+...|+-.+|.++-.+.+-||-..|---+.+++..+++++-+++-+.+. .+.-|.-+..+|.+.|+.++|.+++
T Consensus 693 ~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk-----sPIGy~PFVe~c~~~~n~~EA~KYi 767 (829)
T KOG2280|consen 693 TLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK-----SPIGYLPFVEACLKQGNKDEAKKYI 767 (829)
T ss_pred HHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC-----CCCCchhHHHHHHhcccHHHHhhhh
Confidence 33444555555555555554444444444455555555444444333332 1333444444555555555544444
Q ss_pred H
Q 007329 523 A 523 (608)
Q Consensus 523 ~ 523 (608)
.
T Consensus 768 p 768 (829)
T KOG2280|consen 768 P 768 (829)
T ss_pred h
Confidence 3
No 156
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.65 E-value=0.00059 Score=51.74 Aligned_cols=92 Identities=15% Similarity=0.070 Sum_probs=66.6
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhc
Q 007329 468 WTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRC 547 (608)
Q Consensus 468 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 547 (608)
|..+...+...|++++|...+++.....+.+...+..+...+...+++++|.+.++...+.... +...+..+...+...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 81 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHH
Confidence 4456666777788888888888777444445566777777777788888888888887776544 445677777888888
Q ss_pred CCHHHHHHHHHhc
Q 007329 548 GRMKPAWNQFNSN 560 (608)
Q Consensus 548 g~~~~A~~~~~~~ 560 (608)
|++++|...+...
T Consensus 82 ~~~~~a~~~~~~~ 94 (100)
T cd00189 82 GKYEEALEAYEKA 94 (100)
T ss_pred HhHHHHHHHHHHH
Confidence 8888888877765
No 157
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.65 E-value=0.0015 Score=52.12 Aligned_cols=94 Identities=9% Similarity=-0.082 Sum_probs=64.0
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHhHhCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCC--CccHHHHHH
Q 007329 467 SWTSIILGLRLNNRSFEALIFFRKMMLNLKPN---SVTLVSILSACARIGALMCGKEIHAHALRIGVAF--DGFLPNALL 541 (608)
Q Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~ 541 (608)
++..++..+.+.|++++|.+.|+.+....+.+ ...+..+..++.+.|++++|.+.++.+....+.. ....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 44556666777777777887777777222211 3455667777888888888888888777654332 234566677
Q ss_pred HHhHhcCCHHHHHHHHHhc
Q 007329 542 DMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 542 ~~~~~~g~~~~A~~~~~~~ 560 (608)
.++.+.|++++|.+.++++
T Consensus 84 ~~~~~~~~~~~A~~~~~~~ 102 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQV 102 (119)
T ss_pred HHHHHhCChHHHHHHHHHH
Confidence 7788888888888888776
No 158
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.60 E-value=0.00074 Score=65.46 Aligned_cols=89 Identities=7% Similarity=-0.071 Sum_probs=75.3
Q ss_pred HHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCH
Q 007329 471 IILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRM 550 (608)
Q Consensus 471 l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 550 (608)
-...+...|++++|+++|++++...+.+...|..+..++...|++++|+..++++++..+. +...|..++.+|...|++
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCH
Confidence 3456678899999999999998555667778888889999999999999999999887665 567788888999999999
Q ss_pred HHHHHHHHhc
Q 007329 551 KPAWNQFNSN 560 (608)
Q Consensus 551 ~~A~~~~~~~ 560 (608)
++|...|+++
T Consensus 87 ~eA~~~~~~a 96 (356)
T PLN03088 87 QTAKAALEKG 96 (356)
T ss_pred HHHHHHHHHH
Confidence 9999999887
No 159
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.59 E-value=0.034 Score=55.24 Aligned_cols=264 Identities=13% Similarity=0.132 Sum_probs=128.6
Q ss_pred chHHHHHHHHHhcCChhHHHHHH---------HHHHhcCCCCCCcchHHHHHHHhcCCCChh--hHHHHHHHHHHhCCCC
Q 007329 162 FSWNVLIGGYAKAGFFDEALSLY---------QRMFWVGGVKPDVYTFPCVLRTCGGVPDLK--RGKEVHVHVIRFGYEA 230 (608)
Q Consensus 162 ~~~~~li~~~~~~g~~~~a~~~~---------~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~g~~~ 230 (608)
+.+.+-+..|...|.+++|.++- +.+... ..+.-.+++.=++|.+.++.. +...-++++.++|-.|
T Consensus 557 vp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~---ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P 633 (1081)
T KOG1538|consen 557 VPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME---ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETP 633 (1081)
T ss_pred ccccccchhhhhccchhhhhcccccceecchHHHHHHH---HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc
Confidence 34555566777888888776541 211111 123334555556666655544 3334456777788777
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhh
Q 007329 231 DVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASEL 310 (608)
Q Consensus 231 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 310 (608)
+... +...++-.|++.+|.++|.+ .|.-..|+++|..|+-- -...-+..
T Consensus 634 ~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRMF----------D~aQE~~~ 682 (1081)
T KOG1538|consen 634 NDLL---LADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRMF----------DYAQEFLG 682 (1081)
T ss_pred hHHH---HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHHH----------HHHHHHhh
Confidence 7654 34456677888888888765 45555566666555321 01122233
Q ss_pred cCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHcCCCchHHHHHHHHH
Q 007329 311 VGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVVSWTTMISCYEGSVLPDKAVETYQMM 390 (608)
Q Consensus 311 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 390 (608)
.|..++-..+.+.--+. .-+..--.+...++...|+.++|..+. ..+|-.+-++++-+++
T Consensus 683 ~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~------------------~d~gW~d~lidI~rkl 742 (1081)
T KOG1538|consen 683 SGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEIC------------------GDHGWVDMLIDIARKL 742 (1081)
T ss_pred cCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhh------------------hcccHHHHHHHHHhhc
Confidence 33333333332221111 111111122334444555555554432 1222222233332222
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCCcccHHH
Q 007329 391 EAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTS 470 (608)
Q Consensus 391 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 470 (608)
- ..+..+...+...+-+...+..|-++|..|-+. .++++.....+++++|..+-++.++--...|.-
T Consensus 743 d----~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~p 809 (1081)
T KOG1538|consen 743 D----KAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMP 809 (1081)
T ss_pred c----hhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccch
Confidence 2 123344444444455555666666666655432 345556666677777777666665422222222
Q ss_pred HH-------------HHHHhCCCchHHHHHHHHhH
Q 007329 471 II-------------LGLRLNNRSFEALIFFRKMM 492 (608)
Q Consensus 471 l~-------------~~~~~~~~~~~A~~~~~~m~ 492 (608)
.. .+|.+.|+..+|.++++++.
T Consensus 810 yaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 810 YAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred HHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 22 34445566666666666554
No 160
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.59 E-value=0.001 Score=54.29 Aligned_cols=100 Identities=7% Similarity=-0.152 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHH
Q 007329 499 SVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGY 574 (608)
Q Consensus 499 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~ 574 (608)
-...-.+..-+...|++++|..+|+.+....+. +..-|-.|.-++-..|++++|++.+..+ +.|+..+-.+..++
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 345556667778899999999999999988776 6777778999999999999999999998 66789999999999
Q ss_pred HhcCCHHHHHHHHHHHHHc-CCCCCc
Q 007329 575 AERGQGALAEEFFRKMIDS-KGNWRK 599 (608)
Q Consensus 575 ~~~g~~~~A~~~~~~m~~~-g~~p~~ 599 (608)
...|+.+.|.+.|+..+.. +-.|..
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~~~~~~~ 139 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRICGEVSEH 139 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHhccChhH
Confidence 9999999999999988765 334443
No 161
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.58 E-value=0.0019 Score=55.56 Aligned_cols=62 Identities=18% Similarity=0.090 Sum_probs=27.4
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHhH-hCC-CCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 007329 467 SWTSIILGLRLNNRSFEALIFFRKMM-LNL-KPN-SVTLVSILSACARIGALMCGKEIHAHALRI 528 (608)
Q Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~m~-~~~-~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 528 (608)
.+..+...+...|++++|+..|++.. ... .++ ...+..+...+.+.|++++|...++++.+.
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 101 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL 101 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34444444445555555555555544 111 111 233444444444445555555555444443
No 162
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.54 E-value=0.084 Score=49.95 Aligned_cols=109 Identities=18% Similarity=0.213 Sum_probs=75.5
Q ss_pred cchHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 007329 335 VCNPLIKMYLSFGNREEGEKVFSRMESKDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGN 414 (608)
Q Consensus 335 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 414 (608)
+.+..+.-+...|+...|.++-.+..-|+-..|-..+.+++..++|++-..+... +-++.-|..++.+|.+.|+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 4455566677778888888888888778888888888888888888776665332 1234667777888888888
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHcc
Q 007329 415 LDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQ 459 (608)
Q Consensus 415 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 459 (608)
..+|..+... ++ +..-+..|.++|++.+|.+.--+
T Consensus 253 ~~eA~~yI~k-----~~-----~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 253 KKEASKYIPK-----IP-----DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHHHHh-----CC-----hHHHHHHHHHCCCHHHHHHHHHH
Confidence 7777776654 11 14456677777877777665433
No 163
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.53 E-value=0.00052 Score=61.40 Aligned_cols=126 Identities=15% Similarity=0.026 Sum_probs=89.6
Q ss_pred HHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHH
Q 007329 473 LGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKP 552 (608)
Q Consensus 473 ~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 552 (608)
.-+.+.+++.+|+..|.+.+.-.+-|.+-|..-..+|.+.|.++.|.+-.+..+..++. -...|..|..+|...|++++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHH
Confidence 45678889999999999998555567778888889999999999999888888876544 45678889999999999999
Q ss_pred HHHHHHhc---CCCHHHHH-HHHHHHHhcCCHH---HHHHHHHHHHHcCCCCCc
Q 007329 553 AWNQFNSN---ERDVSAWN-ILLTGYAERGQGA---LAEEFFRKMIDSKGNWRK 599 (608)
Q Consensus 553 A~~~~~~~---~~~~~~~~-~l~~~~~~~g~~~---~A~~~~~~m~~~g~~p~~ 599 (608)
|.+.|++. .|+-.+|. .|-.+-.+.+... .+..-++-....|.-||.
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~ 221 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDS 221 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccc
Confidence 99999888 66655554 4444434444443 333333333333433443
No 164
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.52 E-value=0.0018 Score=62.81 Aligned_cols=91 Identities=11% Similarity=-0.014 Sum_probs=67.3
Q ss_pred HHHhHhcCCHHHHHHHHccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHH
Q 007329 441 IDMYSKCKCIDKALEVFHQIPD---KNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMC 517 (608)
Q Consensus 441 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~ 517 (608)
...+...|++++|++.|++..+ .+...|..+..+|.+.|++++|+..+++++.-.+.+...|..+..+|...|++++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 4455667888888888887763 2445677777788888888888888888874444466677778888888888888
Q ss_pred HHHHHHHHHHhCCC
Q 007329 518 GKEIHAHALRIGVA 531 (608)
Q Consensus 518 a~~~~~~~~~~~~~ 531 (608)
|...++++++.++.
T Consensus 89 A~~~~~~al~l~P~ 102 (356)
T PLN03088 89 AKAALEKGASLAPG 102 (356)
T ss_pred HHHHHHHHHHhCCC
Confidence 88888888776544
No 165
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.50 E-value=0.0018 Score=48.81 Aligned_cols=79 Identities=16% Similarity=0.043 Sum_probs=66.3
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccC--------ChHHHHHHHHHHHHhCCCCchhHHH
Q 007329 368 TTMISCYEGSVLPDKAVETYQMMEAEGS-MPDEITIASVLSACACLG--------NLDLGIKLHQLAMRTGLISYIIIAN 438 (608)
Q Consensus 368 ~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 438 (608)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-..+.+++.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3455566667999999999999999999 999999999999887643 2445678889999999999999999
Q ss_pred HHHHHhHh
Q 007329 439 TLIDMYSK 446 (608)
Q Consensus 439 ~li~~~~~ 446 (608)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99987765
No 166
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.50 E-value=0.0002 Score=53.00 Aligned_cols=80 Identities=15% Similarity=0.212 Sum_probs=58.4
Q ss_pred CCCchHHHHHHHHhHhCCC--CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHH
Q 007329 478 NNRSFEALIFFRKMMLNLK--PNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWN 555 (608)
Q Consensus 478 ~~~~~~A~~~~~~m~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 555 (608)
.|+++.|+.+++++....+ ++...+..+..++.+.|++++|.++++. .+.+.. +....-.+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 5788999999999983222 3455566688999999999999999988 433332 23344456888999999999999
Q ss_pred HHHh
Q 007329 556 QFNS 559 (608)
Q Consensus 556 ~~~~ 559 (608)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 9876
No 167
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.47 E-value=0.0011 Score=59.42 Aligned_cols=93 Identities=14% Similarity=0.077 Sum_probs=76.5
Q ss_pred hHhcCCHHHHHHHHccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCC-CHHHHHHHHHHHhccCcHHHHH
Q 007329 444 YSKCKCIDKALEVFHQIPD---KNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKP-NSVTLVSILSACARIGALMCGK 519 (608)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p-~~~~~~~ll~~~~~~~~~~~a~ 519 (608)
..+.+++.+|+..|.+... .|.+-|..-..+|.+.|.++.|++-.+..+ .+.| -..+|..|..+|...|++++|.
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al-~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL-SIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHH-hcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 4578999999999998773 567888889999999999999999988887 4445 4568999999999999999999
Q ss_pred HHHHHHHHhCCCCCccHHHH
Q 007329 520 EIHAHALRIGVAFDGFLPNA 539 (608)
Q Consensus 520 ~~~~~~~~~~~~p~~~~~~~ 539 (608)
+.|++.++. .|+-.+|-.
T Consensus 170 ~aykKaLel--dP~Ne~~K~ 187 (304)
T KOG0553|consen 170 EAYKKALEL--DPDNESYKS 187 (304)
T ss_pred HHHHhhhcc--CCCcHHHHH
Confidence 999988874 455555543
No 168
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.46 E-value=0.0015 Score=49.23 Aligned_cols=80 Identities=14% Similarity=0.059 Sum_probs=66.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCChhHHHHHHHHHhhcC--------ChhhHHHHHHHHHHhCCCCCcccc
Q 007329 266 WNAMISGYFENGEYMKGLMLFIMMREVLV-DPDFMTLSSVISASELVG--------DEKLGREVHGYVIKMGFSDDVSVC 336 (608)
Q Consensus 266 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 336 (608)
-...|..+...+++.....+|+.++..|+ .|+..+|+.++.+.++.. ..-..+.+|+.|+..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456667777999999999999999999 999999999999877653 244667889999999999999999
Q ss_pred hHHHHHHHh
Q 007329 337 NPLIKMYLS 345 (608)
Q Consensus 337 ~~l~~~~~~ 345 (608)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999988765
No 169
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.45 E-value=0.0027 Score=59.29 Aligned_cols=126 Identities=11% Similarity=0.077 Sum_probs=87.3
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHH-HhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhH
Q 007329 467 SWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSA-CARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYV 545 (608)
Q Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 545 (608)
+|..++....+.+..+.|..+|.+.+.....+...|...... +...++.+.|..+|+...+. +..+...|...++.+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 466667777777777777777777773223344445444444 33356777788888888765 3336777888888888
Q ss_pred hcCCHHHHHHHHHhc---CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 546 RCGRMKPAWNQFNSN---ERD----VSAWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 546 ~~g~~~~A~~~~~~~---~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
+.|+.+.|..+|+++ -+. ...|...+..=.+.|+.+.+..+.+++.+.
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 889999999999888 222 358888888888889999999988888875
No 170
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.45 E-value=0.17 Score=51.55 Aligned_cols=136 Identities=13% Similarity=0.034 Sum_probs=72.2
Q ss_pred cCCCCChhhHHHH-----HHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhhcC---ChhhHHHHHcccCC--
Q 007329 89 LNICVDEDALVNL-----VRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFG---DLGHAWYVFGKMCD-- 158 (608)
Q Consensus 89 ~g~~~~~~~~~~l-----l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~-- 158 (608)
-|++.....|..+ |.-+...+.+..|+++-..+...-... ..++......+.+.. +.+.+..+-+++..
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 3555555555443 344556677777777766653322222 455566666665552 22333333344433
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCC---CCCCcchHHHHHHHhcCCCChhhHHHHHHHHHH
Q 007329 159 RDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGG---VKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIR 225 (608)
Q Consensus 159 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 225 (608)
....+|..+.+-....|+++-|..+++.=...+. +-.+..-+...+.-+...|+.+....++-++..
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKN 574 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 4556677777777777888888777764222110 011223344555555566666655555554443
No 171
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.45 E-value=0.00057 Score=47.56 Aligned_cols=58 Identities=16% Similarity=0.257 Sum_probs=45.1
Q ss_pred HHHHhHhcCCHHHHHHHHHhc---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc
Q 007329 540 LLDMYVRCGRMKPAWNQFNSN---ER-DVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRK 599 (608)
Q Consensus 540 l~~~~~~~g~~~~A~~~~~~~---~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 599 (608)
+...+...|++++|.+.|+++ .| +...|..+...+...|++++|..+|+++++. .|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~--~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL--DPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCC
Confidence 456778888888888888888 33 5678888888888999999999999988875 6654
No 172
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.42 E-value=0.0012 Score=63.93 Aligned_cols=116 Identities=13% Similarity=0.028 Sum_probs=80.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHccCCCC------CHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHH
Q 007329 231 DVDVVNALITMYVKCGDLVRARLVFDGMPKR------DRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSV 304 (608)
Q Consensus 231 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 304 (608)
+......+++......+++.+..++-+.... -..+..++|+.|.+.|..++++.+++.=...|+-||..+++.+
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 3444444555555555566666655554432 2334567888888888888888888888888888888888888
Q ss_pred HHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhc
Q 007329 305 ISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSF 346 (608)
Q Consensus 305 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 346 (608)
|..+.+.|++..|.++...|...+...+..++..-+.++.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888877777666666666555555554
No 173
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.41 E-value=0.0081 Score=56.37 Aligned_cols=125 Identities=11% Similarity=0.139 Sum_probs=63.5
Q ss_pred HHHhc-CChHHHHHHHhhCCC-----C----ChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCC-----CCHH-HHHHH
Q 007329 342 MYLSF-GNREEGEKVFSRMES-----K----DVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSM-----PDEI-TIASV 405 (608)
Q Consensus 342 ~~~~~-~~~~~a~~~~~~~~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-----p~~~-t~~~l 405 (608)
.|... |++++|.+.|++..+ . -...+..+...+.+.|++++|.++|++....... .+.. .|...
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a 202 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKA 202 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 33344 555555555554432 1 1123445566777778888888888777654322 1121 22223
Q ss_pred HHHHHccCChHHHHHHHHHHHHh--CCCCc--hhHHHHHHHHhHh--cCCHHHHHHHHccCCCCCcc
Q 007329 406 LSACACLGNLDLGIKLHQLAMRT--GLISY--IIIANTLIDMYSK--CKCIDKALEVFHQIPDKNVI 466 (608)
Q Consensus 406 l~~~~~~~~~~~a~~~~~~~~~~--~~~~~--~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~ 466 (608)
+-.+...|+...|...++..... ++..+ ..+...|+.+|-. ...++++..-|+.+.+-|..
T Consensus 203 ~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w 269 (282)
T PF14938_consen 203 ILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNW 269 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHH
Confidence 33445567777777777766533 23222 3344556666643 34566777777777665543
No 174
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.38 E-value=0.12 Score=48.44 Aligned_cols=160 Identities=14% Similarity=0.123 Sum_probs=75.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCC-CChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 007329 167 LIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGV-PDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKC 245 (608)
Q Consensus 167 li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 245 (608)
.+..|...|++..|-+++..+- ..|... |+++.|.+.|++..+. |...
T Consensus 100 A~~~y~~~G~~~~aA~~~~~lA----------------~~ye~~~~d~e~Ai~~Y~~A~~~---------------y~~e 148 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKELA----------------EIYEEQLGDYEKAIEYYQKAAEL---------------YEQE 148 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHH----------------HHHCCTT--HHHHHHHHHHHHHH---------------HHHT
T ss_pred HHHHHHhcCcHHHHHHHHHHHH----------------HHHHHHcCCHHHHHHHHHHHHHH---------------HHHC
Confidence 3556666777766666665543 234444 6777777776655432 2222
Q ss_pred CCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-----Chh-HHHHHHHHHhhcCChhhHHH
Q 007329 246 GDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDP-----DFM-TLSSVISASELVGDEKLGRE 319 (608)
Q Consensus 246 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-----~~~-~~~~ll~~~~~~~~~~~a~~ 319 (608)
|....+.. ++..+...+.+.|++++|.++|++........ +.. .|...+-++...|+...|.+
T Consensus 149 ~~~~~a~~-----------~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~ 217 (282)
T PF14938_consen 149 GSPHSAAE-----------CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARK 217 (282)
T ss_dssp T-HHHHHH-----------HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CChhhHHH-----------HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHH
Confidence 32222222 33445556666677777777776665432211 111 12222334445566666666
Q ss_pred HHHHHHHhC--CCCC--cccchHHHHHHHhc--CChHHHHHHHhhCCCCChhhHH
Q 007329 320 VHGYVIKMG--FSDD--VSVCNPLIKMYLSF--GNREEGEKVFSRMESKDVVSWT 368 (608)
Q Consensus 320 ~~~~~~~~~--~~~~--~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~ 368 (608)
.++...... +..+ ......|+.++-.. ..++++..-|+.+.+.|..--.
T Consensus 218 ~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w~~~ 272 (282)
T PF14938_consen 218 ALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNWKTK 272 (282)
T ss_dssp HHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HHHHH
T ss_pred HHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHHHHH
Confidence 666654331 1111 12334445554432 3466666666666665544333
No 175
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.37 E-value=0.15 Score=48.93 Aligned_cols=218 Identities=11% Similarity=0.063 Sum_probs=127.2
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHH------
Q 007329 368 TTMISCYEGSVLPDKAVETYQMMEAEGSMP----DEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIA------ 437 (608)
Q Consensus 368 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p----~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------ 437 (608)
..++..+.. +.+++..+-+.+....+.+ =..+|..++....+.++...|.+.+..+.-.. |+...-
T Consensus 265 ~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld--p~~svs~Kllls 340 (549)
T PF07079_consen 265 EPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD--PRISVSEKLLLS 340 (549)
T ss_pred HHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC--CcchhhhhhhcC
Confidence 334444444 5577777776666553222 13468888888888999999988887665432 222211
Q ss_pred -HHHHHHhHh-c---CCHHHHHHHHccCCCCCccc---HHHH---HHHHHhCCC-chHHHHHHHHhHhCCCC-CHHHHHH
Q 007329 438 -NTLIDMYSK-C---KCIDKALEVFHQIPDKNVIS---WTSI---ILGLRLNNR-SFEALIFFRKMMLNLKP-NSVTLVS 504 (608)
Q Consensus 438 -~~li~~~~~-~---g~~~~A~~~~~~~~~~~~~~---~~~l---~~~~~~~~~-~~~A~~~~~~m~~~~~p-~~~~~~~ 504 (608)
..+.+..+. . -+..+=+.+|+.....|+.. ...| ..-+-+.|. -++|+++++.+. .+.+ |...-+.
T Consensus 341 ~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il-~ft~yD~ec~n~ 419 (549)
T PF07079_consen 341 PKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLIL-QFTNYDIECENI 419 (549)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH-HhccccHHHHHH
Confidence 112222221 1 12222334444444444321 1112 233455665 788999999988 3333 3333333
Q ss_pred HH----HHHhc---cCcHHHHHHHHHHHHHhCCCCCc----cHHHHHHHH--hHhcCCHHHHHHHH---HhcCCCHHHHH
Q 007329 505 IL----SACAR---IGALMCGKEIHAHALRIGVAFDG----FLPNALLDM--YVRCGRMKPAWNQF---NSNERDVSAWN 568 (608)
Q Consensus 505 ll----~~~~~---~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~--~~~~g~~~~A~~~~---~~~~~~~~~~~ 568 (608)
+. .+|.. ...+.+-..+-+-+.+.|+.|-. ..-|.|.++ +...|++.++.-.- -++.|.+.+|.
T Consensus 420 v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~R 499 (549)
T PF07079_consen 420 VFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYR 499 (549)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHH
Confidence 22 23322 23444555555566677887643 345555554 56789998886532 34488999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 007329 569 ILLTGYAERGQGALAEEFFRKM 590 (608)
Q Consensus 569 ~l~~~~~~~g~~~~A~~~~~~m 590 (608)
.++-.+....++++|.+++..+
T Consensus 500 LlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 500 LLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHhhHHHHHHHHHhC
Confidence 9998888999999999998876
No 176
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.063 Score=50.62 Aligned_cols=287 Identities=10% Similarity=-0.017 Sum_probs=142.9
Q ss_pred HHHHHhCCChHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhhcCCh
Q 007329 67 LNELCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFGDL 146 (608)
Q Consensus 67 l~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 146 (608)
-.++.++.++..|+..+.......+. +..-|..-+..+...+++++|.--.+.-++.... ....+...-.++...++.
T Consensus 56 gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~~~ 133 (486)
T KOG0550|consen 56 GNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALSDL 133 (486)
T ss_pred cchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhHHH
Confidence 34567778888888888888875532 2334444444455555565554443333322211 111223333444444555
Q ss_pred hhHHHHHcccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHH-HHhcCCCChhhHHHHHHHHHH
Q 007329 147 GHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVL-RTCGGVPDLKRGKEVHVHVIR 225 (608)
Q Consensus 147 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~ 225 (608)
.+|.+.|+ +...| ....++..++.......-+|...++..+- .++.-.|+.++|.++--...+
T Consensus 134 i~A~~~~~-----~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilk 197 (486)
T KOG0550|consen 134 IEAEEKLK-----SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILK 197 (486)
T ss_pred HHHHHHhh-----hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHh
Confidence 55555555 11111 11223333333322221123333333322 234455666666665555444
Q ss_pred hCCCCchhHHHHHHHH--HHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHH
Q 007329 226 FGYEADVDVVNALITM--YVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSS 303 (608)
Q Consensus 226 ~g~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 303 (608)
.. . ...+...+++ +--.++.+.|...|++...-|+....+ +..-.-.+.++.++..|
T Consensus 198 ld-~--~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~s--------k~~~~~~k~le~~k~~g---------- 256 (486)
T KOG0550|consen 198 LD-A--TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKS--------KSASMMPKKLEVKKERG---------- 256 (486)
T ss_pred cc-c--chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhH--------HhHhhhHHHHHHHHhhh----------
Confidence 32 1 1112222222 223456666666666665544332221 11111122233333332
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHhC---CCCCcccchHHHHHHHhcCChHHHHHHHhhCCCCChhh---HHHHHHHHHcC
Q 007329 304 VISASELVGDEKLGREVHGYVIKMG---FSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVVS---WTTMISCYEGS 377 (608)
Q Consensus 304 ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~li~~~~~~ 377 (608)
.-..+.|++..|.+.|.+.+... ..++...|........+.|+.++|+.--++..+-|..- |..-..++...
T Consensus 257 --N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~l 334 (486)
T KOG0550|consen 257 --NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLAL 334 (486)
T ss_pred --hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHH
Confidence 12345677777777777766442 34445556666666777888888888887777755432 22223356667
Q ss_pred CCchHHHHHHHHHHHCC
Q 007329 378 VLPDKAVETYQMMEAEG 394 (608)
Q Consensus 378 ~~~~~a~~~~~~m~~~g 394 (608)
++|++|.+-+++..+..
T Consensus 335 e~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 335 EKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 88888888888876653
No 177
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.34 E-value=0.005 Score=52.95 Aligned_cols=80 Identities=11% Similarity=-0.005 Sum_probs=41.6
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHccCCC--CC----cccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHH
Q 007329 436 IANTLIDMYSKCKCIDKALEVFHQIPD--KN----VISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSAC 509 (608)
Q Consensus 436 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~ 509 (608)
.+..+...+...|++++|...|++..+ ++ ...+..+...+.+.|++++|+..+++.....+.+...+..+..++
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 344555555566666666666665541 11 134555555666666666666666666532222344444444455
Q ss_pred hccCcH
Q 007329 510 ARIGAL 515 (608)
Q Consensus 510 ~~~~~~ 515 (608)
...|+.
T Consensus 117 ~~~g~~ 122 (172)
T PRK02603 117 HKRGEK 122 (172)
T ss_pred HHcCCh
Confidence 444443
No 178
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.016 Score=54.46 Aligned_cols=270 Identities=12% Similarity=0.032 Sum_probs=140.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCC
Q 007329 269 MISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGN 348 (608)
Q Consensus 269 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 348 (608)
....+.+...+..|+..+....+.... +..-|..=...+...++++.+.--.+.-++.. +-......-.-.++...++
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSD 132 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHH
Confidence 345666667777777777776665322 23334444444555555555554443333221 1112233344445555555
Q ss_pred hHHHHHHHhhCCCCChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCC-CCCHHHHHHHH-HHHHccCChHHHHHHHHHHH
Q 007329 349 REEGEKVFSRMESKDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGS-MPDEITIASVL-SACACLGNLDLGIKLHQLAM 426 (608)
Q Consensus 349 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~t~~~ll-~~~~~~~~~~~a~~~~~~~~ 426 (608)
..+|.+.++.-. .| ....++..++....... .|.-.++..+- ..+.-.|+.+.|.++--.+.
T Consensus 133 ~i~A~~~~~~~~-----~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~il 196 (486)
T KOG0550|consen 133 LIEAEEKLKSKQ-----AY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDIL 196 (486)
T ss_pred HHHHHHHhhhhh-----hh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHH
Confidence 555555554111 00 01112222222222221 13334443332 23345667777766655555
Q ss_pred HhCCCCchhHHHHHHH--HhHhcCCHHHHHHHHccCCCCCccc---------------HHHHHHHHHhCCCchHHHHHHH
Q 007329 427 RTGLISYIIIANTLID--MYSKCKCIDKALEVFHQIPDKNVIS---------------WTSIILGLRLNNRSFEALIFFR 489 (608)
Q Consensus 427 ~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~---------------~~~l~~~~~~~~~~~~A~~~~~ 489 (608)
+.. ..+. +..+++ ++.-.++.+.|...|++..+-++.. |..-..-..+.|++.+|.+.|.
T Consensus 197 kld-~~n~--~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yt 273 (486)
T KOG0550|consen 197 KLD-ATNA--EALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYT 273 (486)
T ss_pred hcc-cchh--HHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHH
Confidence 433 1111 122222 2233566777777777666433221 1222334567888888888888
Q ss_pred HhH----hCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 490 KMM----LNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 490 ~m~----~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
+.+ ....|+...|.....+..+.|+.++|+.--+++.+.+.. -...|..-..++...++|++|.+-++++
T Consensus 274 eal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 274 EALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred HhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887 345566667777777888888888888888777664321 1112222234455667888888888776
No 179
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.31 E-value=0.0012 Score=46.45 Aligned_cols=58 Identities=16% Similarity=0.141 Sum_probs=35.6
Q ss_pred ccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc---CCCHHHHHH
Q 007329 511 RIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN---ERDVSAWNI 569 (608)
Q Consensus 511 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~ 569 (608)
..|++++|.++++.+.+..+. +...+-.++.+|.+.|++++|.++++++ .|+...|..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 63 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQ 63 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence 456666777777766666555 5555556667777777777777777766 455444433
No 180
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.30 E-value=0.002 Score=62.61 Aligned_cols=111 Identities=13% Similarity=0.053 Sum_probs=62.1
Q ss_pred hHHHHHHHhcCChHHHHHHHhhCCC-C-----ChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007329 337 NPLIKMYLSFGNREEGEKVFSRMES-K-----DVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACA 410 (608)
Q Consensus 337 ~~l~~~~~~~~~~~~a~~~~~~~~~-~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 410 (608)
..+++......+++++..++.+... | -..|..++++.|...|..++++.+++.=...|+-||..|++.||..+.
T Consensus 70 d~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl 149 (429)
T PF10037_consen 70 DIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFL 149 (429)
T ss_pred HHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHh
Confidence 3344444444444445444444432 1 122344666666666666666666666666666677777777777777
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhc
Q 007329 411 CLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKC 447 (608)
Q Consensus 411 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 447 (608)
+.|++..|.++...|...+...+..++...+.+|.+.
T Consensus 150 ~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 150 KKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777766666666555444444444444444433
No 181
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.28 E-value=0.0039 Score=58.21 Aligned_cols=129 Identities=15% Similarity=0.173 Sum_probs=93.9
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHH
Q 007329 162 FSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITM 241 (608)
Q Consensus 162 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 241 (608)
.+|-.+++..-+.+..+.|..+|.+..+.+.+..+.....+.+.. ...++.+.|.++|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~-~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEY-YCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHH-HTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 367788888888888999999999988654333444443444433 3356777799999988876 46677888888999
Q ss_pred HHhcCCHHHHHHHHccCCCC------CHhHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 007329 242 YVKCGDLVRARLVFDGMPKR------DRISWNAMISGYFENGEYMKGLMLFIMMREV 292 (608)
Q Consensus 242 ~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 292 (608)
+.+.|+.+.|..+|++.... ....|...+..=.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999987763 2347888888888888888888888888763
No 182
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.23 E-value=0.0046 Score=52.94 Aligned_cols=62 Identities=19% Similarity=0.049 Sum_probs=33.4
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHhHhCC-CC--CHHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 007329 467 SWTSIILGLRLNNRSFEALIFFRKMMLNL-KP--NSVTLVSILSACARIGALMCGKEIHAHALRI 528 (608)
Q Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 528 (608)
.|..+...+...|++++|+..|++..... .+ ...++..+...+...|++++|...++.+.+.
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44445555556666666666666665111 11 1234555556666666666666666665544
No 183
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.22 E-value=0.0034 Score=53.77 Aligned_cols=97 Identities=13% Similarity=0.195 Sum_probs=73.1
Q ss_pred HHHHhhC--CCCChhhHHHHHHHHHc-----CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC------------
Q 007329 353 EKVFSRM--ESKDVVSWTTMISCYEG-----SVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLG------------ 413 (608)
Q Consensus 353 ~~~~~~~--~~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~------------ 413 (608)
...|+.. ...+-.+|..++..|.+ .|..+=....+..|.+-|+.-|..+|+.||+.+-+..
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3444444 34666677777776654 3566666777788888888888889998888776522
Q ss_pred ----ChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCC
Q 007329 414 ----NLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKC 449 (608)
Q Consensus 414 ----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 449 (608)
+-+-|++++++|...|+-||..++..|++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 456789999999999999999999999999876654
No 184
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.15 E-value=0.0074 Score=51.64 Aligned_cols=102 Identities=13% Similarity=0.043 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCC--ccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHH
Q 007329 499 SVTLVSILSACARIGALMCGKEIHAHALRIGVAFD--GFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLT 572 (608)
Q Consensus 499 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~ 572 (608)
...+..+...+...|++++|...++++......+. ..++..+..+|...|++++|.+.++++ +....++..+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 44567777788889999999999999987654432 347888999999999999999999998 334566777776
Q ss_pred HHH-------hcCCHHHHHHHHHHHHH-----cCCCCCch
Q 007329 573 GYA-------ERGQGALAEEFFRKMID-----SKGNWRKL 600 (608)
Q Consensus 573 ~~~-------~~g~~~~A~~~~~~m~~-----~g~~p~~~ 600 (608)
.+. ..|+++.|...+++... .+..|+..
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 766 78888766555544321 13477554
No 185
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.15 E-value=0.0015 Score=46.05 Aligned_cols=60 Identities=22% Similarity=0.186 Sum_probs=43.0
Q ss_pred ccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHc
Q 007329 534 GFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERG-QGALAEEFFRKMIDS 593 (608)
Q Consensus 534 ~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~ 593 (608)
+..|..++..+...|++++|+..|+++ +.+...|..+..+|...| ++++|++.+++.++.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 445666777777777777777777776 335667777777777777 678888887777663
No 186
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.12 E-value=0.02 Score=58.25 Aligned_cols=61 Identities=16% Similarity=0.170 Sum_probs=37.2
Q ss_pred CccHHHHHHHHhHhcCCHHHHHHHHHhc---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 533 DGFLPNALLDMYVRCGRMKPAWNQFNSN---ERDVSAWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 533 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
++..|..+.-.+...|++++|...++++ .|+...|..+...+...|+.++|.+.+++....
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3345555555555556666666666666 555566666666666666666666666666553
No 187
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.11 E-value=0.0037 Score=53.60 Aligned_cols=89 Identities=10% Similarity=0.100 Sum_probs=60.9
Q ss_pred CCCHhHHHHHHHHHHh-----cCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhc----------------CChhhHH
Q 007329 260 KRDRISWNAMISGYFE-----NGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELV----------------GDEKLGR 318 (608)
Q Consensus 260 ~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~----------------~~~~~a~ 318 (608)
.++-.+|..++..|.+ .|..+=....+..|.+-|+.-|..+|+.||+.+=+. .+-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 3455555555555544 355666666677777778888888888887765432 1356677
Q ss_pred HHHHHHHHhCCCCCcccchHHHHHHHhcCC
Q 007329 319 EVHGYVIKMGFSDDVSVCNPLIKMYLSFGN 348 (608)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 348 (608)
+++++|...|+-||..++..+++.+.+.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 888888888888888888888887776654
No 188
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.07 E-value=0.19 Score=45.77 Aligned_cols=58 Identities=12% Similarity=-0.005 Sum_probs=34.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCCcc-hH---HHHHHHhcCCCChhhHHHHHHHHHHhC
Q 007329 167 LIGGYAKAGFFDEALSLYQRMFWVGGVKPDVY-TF---PCVLRTCGGVPDLKRGKEVHVHVIRFG 227 (608)
Q Consensus 167 li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~---~~ll~~~~~~~~~~~a~~~~~~~~~~g 227 (608)
....+.+.|++++|.+.|+.+.... |+.. .. -.+..++.+.+++++|...++..++.-
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y---P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY---PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 3444556677777777777776543 3322 11 234455666777777777777766654
No 189
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.05 E-value=0.011 Score=54.27 Aligned_cols=97 Identities=10% Similarity=-0.067 Sum_probs=62.1
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhCCCCC--ccHHHHHHHHhHhcCCHHHHHHHHHhc---CCC----HHHHHHHHH
Q 007329 502 LVSILSACARIGALMCGKEIHAHALRIGVAFD--GFLPNALLDMYVRCGRMKPAWNQFNSN---ERD----VSAWNILLT 572 (608)
Q Consensus 502 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~----~~~~~~l~~ 572 (608)
|...+....+.|++++|...|+.+++.-+... +..+-.++..|...|++++|...|+++ -|+ ...+..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 33333333445667777777776666544321 234556777777788888888877777 232 445556666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 573 GYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 573 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
.+...|+++.|..+|+++++. .|+..
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~--yP~s~ 251 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK--YPGTD 251 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH--CcCCH
Confidence 777788888888888888775 55554
No 190
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.05 E-value=0.076 Score=44.24 Aligned_cols=127 Identities=12% Similarity=0.002 Sum_probs=74.1
Q ss_pred cchhHHhHHHHHhhhcCChhhHHHHHcccCC----CCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHH
Q 007329 128 LSVRLGNAFLSMFVKFGDLGHAWYVFGKMCD----RDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCV 203 (608)
Q Consensus 128 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 203 (608)
|++...-.|...+...|+..+|...|++... .|....-.+.++....+++..|...++++.+...-.-+..+...+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 4555555566666667777777777666532 355555555666666677777777777766543222233344455
Q ss_pred HHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHc
Q 007329 204 LRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFD 256 (608)
Q Consensus 204 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 256 (608)
.+.+...|...+|+.-|+..++.- |+..........+.+.|+.++|..-+.
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQYV 217 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 666777777777777777777653 333333333444566676666554433
No 191
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.03 E-value=0.026 Score=44.39 Aligned_cols=104 Identities=16% Similarity=0.119 Sum_probs=59.1
Q ss_pred HHHHHHhCCCchHHHHHHHHhH-hCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCC--CccHHHHHHHHhH
Q 007329 471 IILGLRLNNRSFEALIFFRKMM-LNLKPN--SVTLVSILSACARIGALMCGKEIHAHALRIGVAF--DGFLPNALLDMYV 545 (608)
Q Consensus 471 l~~~~~~~~~~~~A~~~~~~m~-~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~ 545 (608)
+..++-..|+.++|+.+|++.. .|.... ...+..+.+++...|++++|..+++......+.. +......+.-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 3455666777777777777777 444333 3355566667777777777777777766543221 1112222334566
Q ss_pred hcCCHHHHHHHHHhc-CCCHHHHHHHHHHH
Q 007329 546 RCGRMKPAWNQFNSN-ERDVSAWNILLTGY 574 (608)
Q Consensus 546 ~~g~~~~A~~~~~~~-~~~~~~~~~l~~~~ 574 (608)
..|+.++|++.+-.. .++...|.--|..|
T Consensus 87 ~~gr~~eAl~~~l~~la~~~~~y~ra~~~y 116 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAETLPRYRRAIRFY 116 (120)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777766544 33333444444443
No 192
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.026 Score=51.21 Aligned_cols=99 Identities=14% Similarity=0.052 Sum_probs=56.6
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcC---CHHHHHHHHHhc----CCCHHH
Q 007329 494 NLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCG---RMKPAWNQFNSN----ERDVSA 566 (608)
Q Consensus 494 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~----~~~~~~ 566 (608)
..+-|...|..|..+|...|+++.|..-|..+.+...+ ++..+..+..++.... ...++.++|+++ +-|+.+
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ira 229 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRA 229 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHH
Confidence 34445566666666666666666666666666655433 4455555555443322 244566666666 224445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 567 WNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 567 ~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
..-|...+...|++.+|...|+.|.+.
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 555555666666666666666666654
No 193
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.96 E-value=0.12 Score=47.04 Aligned_cols=75 Identities=7% Similarity=-0.063 Sum_probs=47.4
Q ss_pred HHHHHHHhCCChHHHHHHHHHHhhcCCCCChhh--HHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHH
Q 007329 65 SRLNELCLNGSLEQALKYLDSMQELNICVDEDA--LVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSM 139 (608)
Q Consensus 65 ~ll~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (608)
.....+...|++++|++.|+.+....+...... ...+..++.+.+++++|...++..++..+.....-+...+.+
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g 113 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRG 113 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHH
Confidence 445566778888899888888877443221111 133445777788888888888888877665443333333333
No 194
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.95 E-value=0.18 Score=50.39 Aligned_cols=86 Identities=10% Similarity=0.131 Sum_probs=48.0
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCC--CChh-----------h
Q 007329 300 TLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMES--KDVV-----------S 366 (608)
Q Consensus 300 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~-----------~ 366 (608)
+...+...+.+...+..|-++|..|-.. ..+++.....++|.+|..+-++..+ +|+. -
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~Dr 819 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDR 819 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhh
Confidence 3333333344445555566666554322 3455666666677777766666655 2221 1
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHCC
Q 007329 367 WTTMISCYEGSVLPDKAVETYQMMEAEG 394 (608)
Q Consensus 367 ~~~li~~~~~~~~~~~a~~~~~~m~~~g 394 (608)
|...-.+|.+.|+-.+|..+++++....
T Consensus 820 FeEAqkAfhkAGr~~EA~~vLeQLtnna 847 (1081)
T KOG1538|consen 820 FEEAQKAFHKAGRQREAVQVLEQLTNNA 847 (1081)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHhhhhh
Confidence 2222346777777788888887776543
No 195
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.93 E-value=0.076 Score=44.26 Aligned_cols=91 Identities=13% Similarity=0.122 Sum_probs=45.0
Q ss_pred HHHHHHHhCCCchHHHHHHHHhHhC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCC-CccHHHHHHHHhHhc
Q 007329 470 SIILGLRLNNRSFEALIFFRKMMLN-LKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAF-DGFLPNALLDMYVRC 547 (608)
Q Consensus 470 ~l~~~~~~~~~~~~A~~~~~~m~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 547 (608)
.|..++.+.|+..+|...|++...| +.-|......+.++....+++..|...++.+.+..+.- ++...-.+...|...
T Consensus 94 rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~ 173 (251)
T COG4700 94 RLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQ 173 (251)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhc
Confidence 3444555555555555555555533 33344455555555555555555555555555443210 112222344555555
Q ss_pred CCHHHHHHHHHhc
Q 007329 548 GRMKPAWNQFNSN 560 (608)
Q Consensus 548 g~~~~A~~~~~~~ 560 (608)
|++.+|...|+-.
T Consensus 174 g~~a~Aesafe~a 186 (251)
T COG4700 174 GKYADAESAFEVA 186 (251)
T ss_pred CCchhHHHHHHHH
Confidence 5555555555544
No 196
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.93 E-value=0.0042 Score=43.09 Aligned_cols=57 Identities=14% Similarity=0.005 Sum_probs=31.8
Q ss_pred HHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 007329 472 ILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRI 528 (608)
Q Consensus 472 ~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 528 (608)
...+.+.|++++|++.|++.+...+-+...+..+..++...|++++|...++++++.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344555666666666666666333334455555556666666666666666665554
No 197
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.89 E-value=0.046 Score=55.66 Aligned_cols=61 Identities=10% Similarity=-0.021 Sum_probs=32.6
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 498 NSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 498 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
+...|..+.-.....|++++|...++++.+.+ |+...|..++..|...|+.++|.+.++++
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33444444444444555555555555555544 24445555555555556666665555554
No 198
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.89 E-value=0.0032 Score=44.35 Aligned_cols=61 Identities=18% Similarity=0.136 Sum_probs=28.9
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHH
Q 007329 467 SWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIG-ALMCGKEIHAHALR 527 (608)
Q Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~ 527 (608)
.|..+...+...|++++|+..|++.+.-.+.+...|..+..++...| ++++|++.++++++
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34444445555555555555555554222223444444444555554 45555555554444
No 199
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.89 E-value=0.0018 Score=45.49 Aligned_cols=53 Identities=19% Similarity=0.280 Sum_probs=46.4
Q ss_pred HhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc
Q 007329 545 VRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRK 599 (608)
Q Consensus 545 ~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 599 (608)
...|++++|.+.|+++ +.+...+..++.+|.+.|++++|.++++++... .|++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~ 58 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDN 58 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCH
Confidence 4689999999999998 447888899999999999999999999999986 7764
No 200
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.85 E-value=0.003 Score=45.80 Aligned_cols=57 Identities=26% Similarity=0.349 Sum_probs=35.8
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHHhc-------CC---C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007329 536 LPNALLDMYVRCGRMKPAWNQFNSN-------ER---D-VSAWNILLTGYAERGQGALAEEFFRKMID 592 (608)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~~---~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 592 (608)
+++.+..+|...|++++|++.++++ .+ + ..++..+...|...|++++|++++++..+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4455556666666666666666554 11 1 34667777778888888888888777654
No 201
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.82 E-value=0.025 Score=44.56 Aligned_cols=106 Identities=16% Similarity=0.053 Sum_probs=63.3
Q ss_pred HHHHHHhCCChHHHHHHHHHHhhcCCCCC--hhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCc--chhHHhHHHHHhh
Q 007329 66 RLNELCLNGSLEQALKYLDSMQELNICVD--EDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHL--SVRLGNAFLSMFV 141 (608)
Q Consensus 66 ll~~~~~~~~~~~A~~~~~~~~~~g~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~ 141 (608)
.-.++-..|+.++|+.+|++....|...+ ...+..+...+...|++++|..+++......+.. +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34456667888888888888888776543 2344555567777888888888887777654331 1122222334455
Q ss_pred hcCChhhHHHHHcccCCCCcchHHHHHHHH
Q 007329 142 KFGDLGHAWYVFGKMCDRDLFSWNVLIGGY 171 (608)
Q Consensus 142 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 171 (608)
..|+.++|++.+-...-++...|.--|..|
T Consensus 87 ~~gr~~eAl~~~l~~la~~~~~y~ra~~~y 116 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAETLPRYRRAIRFY 116 (120)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777766544333333444444433
No 202
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.017 Score=52.30 Aligned_cols=96 Identities=15% Similarity=0.072 Sum_probs=61.2
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHHhCCCCCccHHHHH
Q 007329 464 NVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARI---GALMCGKEIHAHALRIGVAFDGFLPNAL 540 (608)
Q Consensus 464 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~p~~~~~~~l 540 (608)
|...|-.|...|...|+.+.|..-|.+..+-.++|...+..+..++... ..-.++.++++++.+.++. |+.....|
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~lL 233 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALSLL 233 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHHHH
Confidence 4556666667777777777777777766644445555555555555433 2345667777777766554 55666666
Q ss_pred HHHhHhcCCHHHHHHHHHhc
Q 007329 541 LDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 541 ~~~~~~~g~~~~A~~~~~~~ 560 (608)
...+...|++.+|...|+.|
T Consensus 234 A~~afe~g~~~~A~~~Wq~l 253 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQML 253 (287)
T ss_pred HHHHHHcccHHHHHHHHHHH
Confidence 66777777777777777777
No 203
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.79 E-value=0.55 Score=45.24 Aligned_cols=204 Identities=10% Similarity=-0.009 Sum_probs=114.8
Q ss_pred ChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHH-------HHHHHHHH-cc---CChHHHHHHHHHHHHhCCC
Q 007329 363 DVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITI-------ASVLSACA-CL---GNLDLGIKLHQLAMRTGLI 431 (608)
Q Consensus 363 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~-------~~ll~~~~-~~---~~~~~a~~~~~~~~~~~~~ 431 (608)
-+.++..++...++.++...|.+.+.-+... .|+...- ..+-+..+ .. .+...-..+|+.....++.
T Consensus 297 li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD 374 (549)
T PF07079_consen 297 LIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID 374 (549)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc
Confidence 3456777888888888888888887766654 2332211 11222222 11 1223334445554444322
Q ss_pred CchhHHHHHHH---HhHhcCC-HHHHHHHHccCCC---CCcccHHHHH----HHHHhCCCchHHHHHHHHhH----hCCC
Q 007329 432 SYIIIANTLID---MYSKCKC-IDKALEVFHQIPD---KNVISWTSII----LGLRLNNRSFEALIFFRKMM----LNLK 496 (608)
Q Consensus 432 ~~~~~~~~li~---~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~l~----~~~~~~~~~~~A~~~~~~m~----~~~~ 496 (608)
- .....-|+. -+-+.|. -++|+++++.+.+ .|...-|.+. .+|.+.=..+.--++++-+. .|++
T Consensus 375 r-qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~ 453 (549)
T PF07079_consen 375 R-QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLT 453 (549)
T ss_pred H-HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence 1 111122222 2334444 7788888887663 3433333221 23332211122222332222 4666
Q ss_pred CC----HHHHHHHHHH--HhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhcCCCHHHHHHH
Q 007329 497 PN----SVTLVSILSA--CARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSNERDVSAWNIL 570 (608)
Q Consensus 497 p~----~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~l 570 (608)
|- ...-|.|..| +...|++.++.-.-..+.+ +.|.+.+|..++-++.-..++++|++++.+++|+..+|++=
T Consensus 454 ~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~n~~~~dsk 531 (549)
T PF07079_consen 454 PITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPPNERMRDSK 531 (549)
T ss_pred cccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCCchhhHHHH
Confidence 53 3334444443 4567888888766665555 66789999999999999999999999999999988888754
Q ss_pred H
Q 007329 571 L 571 (608)
Q Consensus 571 ~ 571 (608)
+
T Consensus 532 v 532 (549)
T PF07079_consen 532 V 532 (549)
T ss_pred H
Confidence 3
No 204
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.78 E-value=0.0055 Score=43.72 Aligned_cols=57 Identities=12% Similarity=0.111 Sum_probs=34.5
Q ss_pred HHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 542 DMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 542 ~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
..|.+.+++++|.++++.+ +.++..|......+...|++++|.+.|++..+. .|+..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~--~p~~~ 63 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL--SPDDP 63 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH--CCCcH
Confidence 3455666666666666665 334555666666666666666666666666654 44444
No 205
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.73 E-value=0.0021 Score=59.96 Aligned_cols=130 Identities=12% Similarity=0.035 Sum_probs=74.0
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHhH---h--CC-CCCHHHHHHHHHHHhccCcHHHHHHHHHHHH----HhCCC-CCcc
Q 007329 467 SWTSIILGLRLNNRSFEALIFFRKMM---L--NL-KPNSVTLVSILSACARIGALMCGKEIHAHAL----RIGVA-FDGF 535 (608)
Q Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~m~---~--~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~-p~~~ 535 (608)
.|..|...|.-.|+++.|+..-+.-+ + |- ......+..+..+++-.|+++.|.+.++... +.|-+ ....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 34445555555667777766655433 1 11 1223456666677777777777777666443 22221 1122
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHHhc----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 007329 536 LPNALLDMYVRCGRMKPAWNQFNSN----------ERDVSAWNILLTGYAERGQGALAEEFFRKMIDSKGN 596 (608)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~~~~~~~----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 596 (608)
..-+|.+.|.-..++++|++++.+- --....+-+|..+|...|..++|+...+.-++...+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~e 347 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLE 347 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 3335666666666777777766543 113456677777777777777777777666654333
No 206
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.73 E-value=0.072 Score=46.99 Aligned_cols=128 Identities=13% Similarity=0.069 Sum_probs=89.6
Q ss_pred hhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHH----
Q 007329 365 VSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTL---- 440 (608)
Q Consensus 365 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---- 440 (608)
...+.++..+...|.+.-....+++..+....-++.....|.+.-.+.|+.+.|...++...+..-+.+...++.+
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 3456677777788888888899999988776677888888888888999999999999877764334443333332
Q ss_pred -HHHhHhcCCHHHHHHHHccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHhH
Q 007329 441 -IDMYSKCKCIDKALEVFHQIPD---KNVISWTSIILGLRLNNRSFEALIFFRKMM 492 (608)
Q Consensus 441 -i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 492 (608)
...|.-++++.+|...+.++.. .|+...|.-.-++.-.|+..+|++.++.|.
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~ 313 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMV 313 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHh
Confidence 2345556777777777777664 344455555555556677777777777776
No 207
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.68 E-value=0.89 Score=46.24 Aligned_cols=41 Identities=17% Similarity=0.053 Sum_probs=21.9
Q ss_pred ChhhHHHHHcccCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 007329 145 DLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRM 187 (608)
Q Consensus 145 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 187 (608)
.+++|.+..+.- |.+..|..|.......-.++.|..-|-+.
T Consensus 678 gledA~qfiEdn--PHprLWrllAe~Al~Kl~l~tAE~AFVrc 718 (1189)
T KOG2041|consen 678 GLEDAIQFIEDN--PHPRLWRLLAEYALFKLALDTAEHAFVRC 718 (1189)
T ss_pred chHHHHHHHhcC--CchHHHHHHHHHHHHHHhhhhHhhhhhhh
Confidence 344555554443 44456666666555555555555555444
No 208
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.67 E-value=0.12 Score=45.71 Aligned_cols=138 Identities=15% Similarity=0.093 Sum_probs=100.5
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHH---
Q 007329 264 ISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLI--- 340 (608)
Q Consensus 264 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--- 340 (608)
...+.++..+.-.|.+.-..+++++..+...+.+......+.+...+.|+.+.|...++...+..-..+...++.++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 34566777777888888889999999887767777888888888889999999999999887664445555544443
Q ss_pred --HHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHH
Q 007329 341 --KMYLSFGNREEGEKVFSRMES---KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIA 403 (608)
Q Consensus 341 --~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~ 403 (608)
..|.-.+++..|...++++.. .|+..-|.-.-+..-.|+..+|++.++.|.+. .|...+-+
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 345556788888888888776 34555555555566678888999999988876 34444333
No 209
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.65 E-value=0.011 Score=55.42 Aligned_cols=128 Identities=15% Similarity=0.087 Sum_probs=86.6
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHH----HhCCC-CchhHHHHHHHHhHhcCCHHHHHHHHccCC-------CCC--cc
Q 007329 401 TIASVLSACACLGNLDLGIKLHQLAM----RTGLI-SYIIIANTLIDMYSKCKCIDKALEVFHQIP-------DKN--VI 466 (608)
Q Consensus 401 t~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~--~~ 466 (608)
.|..|.+.|.-.|+++.|+...+.-. +.|-. .....+.-|.+++.-.|+++.|.+.++.-. +.. ..
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 46666666777888998887766322 23322 123455667777888889999888887543 222 23
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHhH---h---CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 007329 467 SWTSIILGLRLNNRSFEALIFFRKMM---L---NLKPNSVTLVSILSACARIGALMCGKEIHAHALRI 528 (608)
Q Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~m~---~---~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 528 (608)
+..+|...|.-..++++|+.++.+-+ + ...-....+.+|..+|...|..++|+.+.+..++.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 45567777777788888988887765 1 12334557888899999999999998877765543
No 210
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.52 E-value=0.015 Score=41.49 Aligned_cols=52 Identities=15% Similarity=0.070 Sum_probs=29.4
Q ss_pred HHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 508 ACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 508 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
.+.+.+++++|.++++.+.+.++. ++..+.....+|.+.|++++|.+.|+++
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~ 55 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERA 55 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHH
Confidence 445555555555555555555444 4555555555566666666666655555
No 211
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.52 E-value=0.2 Score=44.34 Aligned_cols=68 Identities=15% Similarity=0.095 Sum_probs=45.7
Q ss_pred hHHHHHHHHhCCChHHHHHHHHHHhhcCCCC--ChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcch
Q 007329 63 PNSRLNELCLNGSLEQALKYLDSMQELNICV--DEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSV 130 (608)
Q Consensus 63 ~~~ll~~~~~~~~~~~A~~~~~~~~~~g~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 130 (608)
.......+...|++.+|+..|+.+....+.. -......+..++.+.|+++.|...++..++.-|....
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~ 77 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK 77 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc
Confidence 3445567788999999999999997753321 2334555667888889999999999988887765443
No 212
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.52 E-value=0.95 Score=47.16 Aligned_cols=51 Identities=10% Similarity=0.045 Sum_probs=29.6
Q ss_pred HHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 007329 471 IILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAH 524 (608)
Q Consensus 471 l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 524 (608)
++..+.+..+.+.+..+.+..- +-++..|..++..+++.+..+...+...+
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g---~~~p~l~~~~L~yF~~~~~i~~~~~~v~~ 761 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLG---KEDPSLWLHALKYFVSEESIEDCYEIVYK 761 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhC---ccChHHHHHHHHHHhhhcchhhHHHHHHH
Confidence 4555666666666666666553 11566677777777776655544444333
No 213
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.50 E-value=1.3 Score=48.10 Aligned_cols=95 Identities=16% Similarity=0.171 Sum_probs=58.9
Q ss_pred HHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 007329 442 DMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEI 521 (608)
Q Consensus 442 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 521 (608)
-+|.++|+.++|++.+ ...|++++|+.+..++..+..--..+-..|..-+..++++-+|-++
T Consensus 960 l~Ye~~GklekAl~a~------------------~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~i 1021 (1265)
T KOG1920|consen 960 LMYERCGKLEKALKAY------------------KECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKI 1021 (1265)
T ss_pred HHHHHhccHHHHHHHH------------------HHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHH
Confidence 3466677777776644 4467777777777766422111112224566677777888887777
Q ss_pred HHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhcCC
Q 007329 522 HAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSNER 562 (608)
Q Consensus 522 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 562 (608)
..+.... ..-.+..|++...|++|..+....+.
T Consensus 1022 l~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~~~ 1054 (1265)
T KOG1920|consen 1022 LLEYLSD--------PEEAVALLCKAKEWEEALRVASKAKR 1054 (1265)
T ss_pred HHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhccc
Confidence 7665431 12345667788888888887776643
No 214
>PRK15331 chaperone protein SicA; Provisional
Probab=96.43 E-value=0.092 Score=43.33 Aligned_cols=88 Identities=15% Similarity=-0.011 Sum_probs=63.4
Q ss_pred HHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHH
Q 007329 472 ILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMK 551 (608)
Q Consensus 472 ~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 551 (608)
...+...|++++|..+|+-+..--+-|..-+..|..++-..+++++|...+..+...+.. |+..+-....+|...|+.+
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHH
Confidence 344556778888888887776222334445566666667778889999888877766553 5555666788888999999
Q ss_pred HHHHHHHhc
Q 007329 552 PAWNQFNSN 560 (608)
Q Consensus 552 ~A~~~~~~~ 560 (608)
.|+..|+.+
T Consensus 123 ~A~~~f~~a 131 (165)
T PRK15331 123 KARQCFELV 131 (165)
T ss_pred HHHHHHHHH
Confidence 999988877
No 215
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.43 E-value=0.29 Score=46.83 Aligned_cols=29 Identities=17% Similarity=-0.036 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 565 SAWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 565 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
..+.+++.++.-.|+++.|.+..++|.+.
T Consensus 306 Wd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 306 WDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 34556777777777777777777777764
No 216
>PRK15331 chaperone protein SicA; Provisional
Probab=96.23 E-value=0.033 Score=45.88 Aligned_cols=88 Identities=9% Similarity=-0.049 Sum_probs=75.8
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCC
Q 007329 504 SILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQ 579 (608)
Q Consensus 504 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~ 579 (608)
....-+...|++++|..+|+-+.-.++. +..-+..|..++-..|++++|...+..+ ..|+..+-.....|...|+
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCC
Confidence 3445567889999999999999887766 6677888999999999999999999887 5577778888899999999
Q ss_pred HHHHHHHHHHHHH
Q 007329 580 GALAEEFFRKMID 592 (608)
Q Consensus 580 ~~~A~~~~~~m~~ 592 (608)
.+.|+..|+..++
T Consensus 121 ~~~A~~~f~~a~~ 133 (165)
T PRK15331 121 AAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998887
No 217
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.17 E-value=0.086 Score=48.38 Aligned_cols=93 Identities=9% Similarity=-0.058 Sum_probs=57.9
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHhCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCC--CccHHHHHHH
Q 007329 468 WTSIILGLRLNNRSFEALIFFRKMMLNLKPN---SVTLVSILSACARIGALMCGKEIHAHALRIGVAF--DGFLPNALLD 542 (608)
Q Consensus 468 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~ 542 (608)
|...+..+.+.|++++|+..|+.++...+-+ ...+..+..++...|++++|...|+.+.+.-+.- ....+-.++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 3333333455677777777777777333222 2456667777777788888888887777543321 1233334566
Q ss_pred HhHhcCCHHHHHHHHHhc
Q 007329 543 MYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 543 ~~~~~g~~~~A~~~~~~~ 560 (608)
+|...|+.++|.++++++
T Consensus 226 ~~~~~g~~~~A~~~~~~v 243 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQV 243 (263)
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 677778888888877766
No 218
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.10 E-value=1.3 Score=41.89 Aligned_cols=255 Identities=15% Similarity=0.031 Sum_probs=141.9
Q ss_pred ChhHHHHHHHHH--hhcCChhhHHHHHHHHHHhCCCCCccc--chHHHHHHHhcCChHHHHHHHhhCCC--C-ChhhHHH
Q 007329 297 DFMTLSSVISAS--ELVGDEKLGREVHGYVIKMGFSDDVSV--CNPLIKMYLSFGNREEGEKVFSRMES--K-DVVSWTT 369 (608)
Q Consensus 297 ~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~ 369 (608)
|......++.+- .-.|+.+.|.+-|+.|... |.... ...|.-.--+.|..+.|..+-++... | -...+..
T Consensus 117 DqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~A 193 (531)
T COG3898 117 DQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARA 193 (531)
T ss_pred cchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHH
Confidence 444444444332 2346666666666665432 11111 11222223345666666666555543 2 2345667
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHHc---cCChHHHHHHHHHHHHhCCCCchhH-HHHHHH
Q 007329 370 MISCYEGSVLPDKAVETYQMMEAEG-SMPDEI--TIASVLSACAC---LGNLDLGIKLHQLAMRTGLISYIII-ANTLID 442 (608)
Q Consensus 370 li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~--t~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~ 442 (608)
.+...|..|+|+.|+++++.-.... +.++.. .-..|+.+-.. ..+...|...-.+..+ +.|+..- -..-..
T Consensus 194 tLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAr 271 (531)
T COG3898 194 TLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAAR 271 (531)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHH
Confidence 7777788888888888877665543 333432 22223322211 1234444444333333 3444322 223346
Q ss_pred HhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhH--hCCCCC-HHHHHHHHHHHhccCcHHHHH
Q 007329 443 MYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMM--LNLKPN-SVTLVSILSACARIGALMCGK 519 (608)
Q Consensus 443 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~--~~~~p~-~~~~~~ll~~~~~~~~~~~a~ 519 (608)
++.+.|+..++-.+++.+-+..++.--.. .|....--+.++.-+++.. ..++|| ......+..+-...|++..|.
T Consensus 272 alf~d~~~rKg~~ilE~aWK~ePHP~ia~--lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~AR 349 (531)
T COG3898 272 ALFRDGNLRKGSKILETAWKAEPHPDIAL--LYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAAR 349 (531)
T ss_pred HHHhccchhhhhhHHHHHHhcCCChHHHH--HHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHH
Confidence 67888888888888887764333322222 3333344445666666665 456664 556677778888888888887
Q ss_pred HHHHHHHHhCCCCCccHHHHHHHHhHh-cCCHHHHHHHHHhc
Q 007329 520 EIHAHALRIGVAFDGFLPNALLDMYVR-CGRMKPAWNQFNSN 560 (608)
Q Consensus 520 ~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~ 560 (608)
.--+.+.+ ..|....|..|.+.-.. .|+-.++...+.+.
T Consensus 350 a~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 350 AKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 76666554 35667777777777654 49999998888776
No 219
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.05 E-value=0.025 Score=40.89 Aligned_cols=60 Identities=23% Similarity=0.226 Sum_probs=29.5
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHhH---hCCCCC----HHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 007329 467 SWTSIILGLRLNNRSFEALIFFRKMM---LNLKPN----SVTLVSILSACARIGALMCGKEIHAHAL 526 (608)
Q Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~m~---~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 526 (608)
+|+.+...|...|++++|+..|++.. +...++ ..++..+..++...|++++|++++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455555555555555555555554 112211 2244555555555555555555555543
No 220
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.94 E-value=1.1 Score=39.62 Aligned_cols=58 Identities=12% Similarity=0.079 Sum_probs=27.3
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCC-CcchHHHHHHHhcCCCChhhHHHHHHHHHHh
Q 007329 169 GGYAKAGFFDEALSLYQRMFWVGGVKP-DVYTFPCVLRTCGGVPDLKRGKEVHVHVIRF 226 (608)
Q Consensus 169 ~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 226 (608)
..+...|++.+|.+.|+.+....+-.| -....-.++.++.+.|+++.|...++..++.
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344555666666666666654421111 1112334445555556666666666665554
No 221
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.91 E-value=2.7 Score=43.99 Aligned_cols=117 Identities=16% Similarity=0.096 Sum_probs=64.1
Q ss_pred hHHHHHhhhcCChhhHHHHHcccCCCCcchHHH----HHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcC
Q 007329 134 NAFLSMFVKFGDLGHAWYVFGKMCDRDLFSWNV----LIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGG 209 (608)
Q Consensus 134 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~ 209 (608)
..-++.+.+...++-|..+-+.-.- |...... -.+-+.+.|++++|...|-+-... +.|. .+|.-+..
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le~s-----~Vi~kfLd 409 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF--LEPS-----EVIKKFLD 409 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc--CChH-----HHHHHhcC
Confidence 3445566666666666666554322 2222222 223344567777777666554321 2332 34555555
Q ss_pred CCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCC
Q 007329 210 VPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMP 259 (608)
Q Consensus 210 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 259 (608)
......--.+++.+.+.|+. +...-..|+++|.+.++.++-.++.+...
T Consensus 410 aq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 55555566666666666643 33344566777777777776666665554
No 222
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.84 E-value=0.28 Score=48.79 Aligned_cols=161 Identities=13% Similarity=0.094 Sum_probs=108.2
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 007329 169 GGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDL 248 (608)
Q Consensus 169 ~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 248 (608)
....-.|+++++.++...-.-...++ ....+.+++-+-+.|..+.|+++...- . .-.+...+.|++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~---------~---~rFeLAl~lg~L 334 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDP---------D---HRFELALQLGNL 334 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-H---------H---HHHHHHHHCT-H
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCCh---------H---HHhHHHHhcCCH
Confidence 34456788888877775211111022 445778888888999999988875432 2 234556789999
Q ss_pred HHHHHHHccCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhC
Q 007329 249 VRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMG 328 (608)
Q Consensus 249 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 328 (608)
+.|.++.++.. +...|..|.....+.|+++-|.+.|.+..+ |..|+-.|...|+.+...++.+.....|
T Consensus 335 ~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 335 DIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 99999988876 677999999999999999999999987654 6667777788888888888887777665
Q ss_pred CCCCcccchHHHHHHHhcCChHHHHHHHhhCC
Q 007329 329 FSDDVSVCNPLIKMYLSFGNREEGEKVFSRME 360 (608)
Q Consensus 329 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 360 (608)
-+|....++...|+.++..+++.+-.
T Consensus 404 ------~~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 404 ------DINIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp -------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred ------CHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 25666667777788888877766544
No 223
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.80 E-value=1.8 Score=41.03 Aligned_cols=22 Identities=18% Similarity=0.072 Sum_probs=11.0
Q ss_pred HHHhhcCChhhHHHHHHHHHHh
Q 007329 306 SASELVGDEKLGREVHGYVIKM 327 (608)
Q Consensus 306 ~~~~~~~~~~~a~~~~~~~~~~ 327 (608)
.++.+.|+..++-.+++.+-+.
T Consensus 271 ralf~d~~~rKg~~ilE~aWK~ 292 (531)
T COG3898 271 RALFRDGNLRKGSKILETAWKA 292 (531)
T ss_pred HHHHhccchhhhhhHHHHHHhc
Confidence 3444555555555555555444
No 224
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.78 E-value=0.06 Score=44.75 Aligned_cols=70 Identities=11% Similarity=-0.003 Sum_probs=46.4
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH-----HhCCCCCccHH
Q 007329 468 WTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHAL-----RIGVAFDGFLP 537 (608)
Q Consensus 468 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-----~~~~~p~~~~~ 537 (608)
...++..+...|++++|+++.+.+....+-|...|..++.++...|+..+|.++|+++. +.|+.|+..+-
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 34456667778888888888888875556677788888888888888888888887664 45777776553
No 225
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.73 E-value=0.41 Score=47.67 Aligned_cols=160 Identities=16% Similarity=0.178 Sum_probs=110.0
Q ss_pred HHHHHHhCCChHHHHHHHH--HHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhhc
Q 007329 66 RLNELCLNGSLEQALKYLD--SMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKF 143 (608)
Q Consensus 66 ll~~~~~~~~~~~A~~~~~--~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 143 (608)
..+...-+|+++++.+..+ ++.. ..+......+++.+.+.|-.+.|+++... . ..-.....++
T Consensus 267 ~fk~av~~~d~~~v~~~i~~~~ll~---~i~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~---~~rFeLAl~l 331 (443)
T PF04053_consen 267 EFKTAVLRGDFEEVLRMIAASNLLP---NIPKDQGQSIARFLEKKGYPELALQFVTD---------P---DHRFELALQL 331 (443)
T ss_dssp HHHHHHHTT-HHH-----HHHHTGG---G--HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHC
T ss_pred HHHHHHHcCChhhhhhhhhhhhhcc---cCChhHHHHHHHHHHHCCCHHHHHhhcCC---------h---HHHhHHHHhc
Confidence 3566777999999887775 2221 12356688899999999999999887322 2 2345566789
Q ss_pred CChhhHHHHHcccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHH
Q 007329 144 GDLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHV 223 (608)
Q Consensus 144 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 223 (608)
|+++.|.++.++.. +...|..|.....+.|+++-|.+.|.+.. -|..++-.|...|+.+...++.+..
T Consensus 332 g~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~----------d~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 332 GNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAK----------DFSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp T-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhc----------CccccHHHHHHhCCHHHHHHHHHHH
Confidence 99999999998875 66699999999999999999999999864 3556677777888888888888777
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccC
Q 007329 224 IRFGYEADVDVVNALITMYVKCGDLVRARLVFDGM 258 (608)
Q Consensus 224 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 258 (608)
...| -++....++.-.|+.++..+++.+-
T Consensus 400 ~~~~------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 400 EERG------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHcc------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 7766 2455555666678888777766543
No 226
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.73 E-value=0.085 Score=51.16 Aligned_cols=63 Identities=14% Similarity=0.112 Sum_probs=54.2
Q ss_pred CcchHHHHHHHHhCCChHHHHHHHHHHhhcCCCCCh----hhHHHHHHHhhccCCchhhhHHHHHHHHh
Q 007329 60 TKNPNSRLNELCLNGSLEQALKYLDSMQELNICVDE----DALVNLVRLCEWKRGYDEGLYLHSVVSKT 124 (608)
Q Consensus 60 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~g~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 124 (608)
...++.+-.+|.+.|++++|+..|++.++.. |+. .+|..+..+|...|+.++|...++..++.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3348889999999999999999999998854 553 35888999999999999999999998886
No 227
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.71 E-value=0.13 Score=49.86 Aligned_cols=63 Identities=21% Similarity=0.121 Sum_probs=40.3
Q ss_pred cccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 007329 465 VISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNS----VTLVSILSACARIGALMCGKEIHAHALRI 528 (608)
Q Consensus 465 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 528 (608)
...|+.+..+|.+.|++++|+..|++.+ .+.|+. .+|..+..+|...|+.++|++.++++++.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rAL-eL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETAL-ELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3456666667777777777777777666 344442 24666666666677777777776666654
No 228
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.66 E-value=0.67 Score=44.45 Aligned_cols=73 Identities=12% Similarity=0.023 Sum_probs=48.1
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCC-C------hhhHHHHHHHHHc---CCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007329 338 PLIKMYLSFGNREEGEKVFSRMESK-D------VVSWTTMISCYEG---SVLPDKAVETYQMMEAEGSMPDEITIASVLS 407 (608)
Q Consensus 338 ~l~~~~~~~~~~~~a~~~~~~~~~~-~------~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 407 (608)
.++-+|....+++...++.+.+... + ...-....-++.+ .|+.++|++++..+....-.+++.||..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4555677777888888888777762 1 1111223335556 7888888888888666666778888877776
Q ss_pred HHH
Q 007329 408 ACA 410 (608)
Q Consensus 408 ~~~ 410 (608)
.|-
T Consensus 226 IyK 228 (374)
T PF13281_consen 226 IYK 228 (374)
T ss_pred HHH
Confidence 653
No 229
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.64 E-value=2.9 Score=42.39 Aligned_cols=158 Identities=13% Similarity=0.057 Sum_probs=99.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcc-----hHHHHHHHhcC----CCChhhHHHHHHHHHHhCCCCchhHHH
Q 007329 166 VLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVY-----TFPCVLRTCGG----VPDLKRGKEVHVHVIRFGYEADVDVVN 236 (608)
Q Consensus 166 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~-----~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~ 236 (608)
.++....-.|+-+.+++++.+..+.+++.-... .|..++..++. ..+.+.|.++++.+.+. -|+...|.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl 270 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFL 270 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHH
Confidence 344455556888888888887765443332222 34444444433 45677888888888876 45544443
Q ss_pred H-HHHHHHhcCCHHHHHHHHccCCCC-------CHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHH
Q 007329 237 A-LITMYVKCGDLVRARLVFDGMPKR-------DRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISAS 308 (608)
Q Consensus 237 ~-li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 308 (608)
. -.+.+...|++++|.+.|+..... ....+-.+.-.+.-..+|++|.+.|..+.+.. ..+..+|.-+..+|
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence 3 345566779999999999865531 23345556666778889999999999888753 22444455444433
Q ss_pred -hhcCCh-------hhHHHHHHHHHH
Q 007329 309 -ELVGDE-------KLGREVHGYVIK 326 (608)
Q Consensus 309 -~~~~~~-------~~a~~~~~~~~~ 326 (608)
...++. ++|.+++.++..
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHHH
Confidence 345666 677777766543
No 230
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.57 E-value=0.09 Score=43.68 Aligned_cols=69 Identities=22% Similarity=0.247 Sum_probs=36.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHH-----hCCCCchhH
Q 007329 164 WNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIR-----FGYEADVDV 234 (608)
Q Consensus 164 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~g~~~~~~~ 234 (608)
...++..+...|++++|.++.+.+.... +-|...|..+|.++...|+...|.++|+.+.+ .|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d--P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD--PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3344555556666666666666666544 44555666666666666666666666665542 466666554
No 231
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.47 E-value=0.13 Score=40.93 Aligned_cols=49 Identities=10% Similarity=-0.075 Sum_probs=28.6
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHh
Q 007329 159 RDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTC 207 (608)
Q Consensus 159 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~ 207 (608)
|+.....+++.+|+..|++..|+++++...+.-+++.+..+|..|++-+
T Consensus 50 Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 50 PTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 5555566666666666666666666666655544555555555555443
No 232
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.42 E-value=0.6 Score=41.06 Aligned_cols=140 Identities=12% Similarity=0.098 Sum_probs=73.8
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCC------CCHHHHHHHHHH
Q 007329 435 IIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLK------PNSVTLVSILSA 508 (608)
Q Consensus 435 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~------p~~~~~~~ll~~ 508 (608)
..|+-...+|..+|..+.|-..+++.- -..+..++++|+++|++...-+. .-...+..+-+.
T Consensus 92 dl~eKAs~lY~E~GspdtAAmaleKAa------------k~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~ 159 (308)
T KOG1585|consen 92 DLYEKASELYVECGSPDTAAMALEKAA------------KALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRV 159 (308)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHH------------HHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhH
Confidence 344555556666666666555554422 12234456666666666651111 112234444455
Q ss_pred HhccCcHHHHHHHHHHHH----HhCCCCCc-cHHHHHHHHhHhcCCHHHHHHHHHhc--------CCCHHHHHHHHHHHH
Q 007329 509 CARIGALMCGKEIHAHAL----RIGVAFDG-FLPNALLDMYVRCGRMKPAWNQFNSN--------ERDVSAWNILLTGYA 575 (608)
Q Consensus 509 ~~~~~~~~~a~~~~~~~~----~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~~~~~~l~~~~~ 575 (608)
+.+...+++|-..+.+-. +..--++. ..|-..|-.|.-..++..|...++.. ..|..+...|+.+|
T Consensus 160 lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay- 238 (308)
T KOG1585|consen 160 LVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY- 238 (308)
T ss_pred hhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-
Confidence 566666666554443322 11111121 23445555666677888888887774 23556777777766
Q ss_pred hcCCHHHHHHHH
Q 007329 576 ERGQGALAEEFF 587 (608)
Q Consensus 576 ~~g~~~~A~~~~ 587 (608)
..|+.+++..++
T Consensus 239 d~gD~E~~~kvl 250 (308)
T KOG1585|consen 239 DEGDIEEIKKVL 250 (308)
T ss_pred ccCCHHHHHHHH
Confidence 456766665543
No 233
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.41 E-value=0.11 Score=49.22 Aligned_cols=94 Identities=11% Similarity=0.013 Sum_probs=59.4
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhH
Q 007329 466 ISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYV 545 (608)
Q Consensus 466 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 545 (608)
..++.+..++.+.+++.+|++.-.+.+.--++|.-.+-.-..++...|+++.|+..|+++++..+. |..+-+.|+.+-.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQ 336 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 356667777777777777777777777555566666666677777777777777777777766554 4444445555544
Q ss_pred hcCCHHHH-HHHHHhc
Q 007329 546 RCGRMKPA-WNQFNSN 560 (608)
Q Consensus 546 ~~g~~~~A-~~~~~~~ 560 (608)
+.....+. .++|..|
T Consensus 337 k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 44443332 4555555
No 234
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.28 E-value=0.16 Score=40.47 Aligned_cols=51 Identities=10% Similarity=0.032 Sum_probs=31.5
Q ss_pred CCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHh-CCCCchhHHHHHHHHHH
Q 007329 193 VKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRF-GYEADVDVVNALITMYV 243 (608)
Q Consensus 193 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~ 243 (608)
..|+..+..+++.+++..|++..|.++++...+. +++.+..+|..|+.-..
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 5566666666666666666666666666665543 55555566666655443
No 235
>PRK11906 transcriptional regulator; Provisional
Probab=95.26 E-value=0.45 Score=46.43 Aligned_cols=139 Identities=10% Similarity=-0.012 Sum_probs=79.2
Q ss_pred CHHHHHHHHccCC---CCC---cccHHHHHHHHHh---------CCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccC
Q 007329 449 CIDKALEVFHQIP---DKN---VISWTSIILGLRL---------NNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIG 513 (608)
Q Consensus 449 ~~~~A~~~~~~~~---~~~---~~~~~~l~~~~~~---------~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~ 513 (608)
..+.|..+|.+.. +-| ...|..+..++.. .....+|.++.++..+--+-|......+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 3556777777766 333 2334444333321 122344556666665445556666666666666677
Q ss_pred cHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc---CCC---HHHHHHHHHHHHhcCCHHHHHHHH
Q 007329 514 ALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN---ERD---VSAWNILLTGYAERGQGALAEEFF 587 (608)
Q Consensus 514 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~---~~~~~~l~~~~~~~g~~~~A~~~~ 587 (608)
+++.|...|+++...++. ....|-.......-+|+.++|.+.+++. .|. .......+..|+.. ..++|+.++
T Consensus 353 ~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 430 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLY 430 (458)
T ss_pred chhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHHH
Confidence 777777778777776554 3444555555566677788888777775 332 22333444455544 345556554
Q ss_pred HH
Q 007329 588 RK 589 (608)
Q Consensus 588 ~~ 589 (608)
-+
T Consensus 431 ~~ 432 (458)
T PRK11906 431 YK 432 (458)
T ss_pred hh
Confidence 43
No 236
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.01 E-value=1.3 Score=35.80 Aligned_cols=78 Identities=6% Similarity=-0.096 Sum_probs=51.6
Q ss_pred HHHHHhCCCchHHHHHHHHhHhCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcC
Q 007329 472 ILGLRLNNRSFEALIFFRKMMLNLKP---NSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCG 548 (608)
Q Consensus 472 ~~~~~~~~~~~~A~~~~~~m~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 548 (608)
.....+.|++++|.+.|+.+....+- .......++.++.+.+++++|...+++.++..+.-.-.-|.....+++.-.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 34455677788888888877733332 344566777788888888888888888888776644455555555554433
Q ss_pred C
Q 007329 549 R 549 (608)
Q Consensus 549 ~ 549 (608)
.
T Consensus 97 ~ 97 (142)
T PF13512_consen 97 Q 97 (142)
T ss_pred H
Confidence 3
No 237
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.87 E-value=0.42 Score=43.01 Aligned_cols=88 Identities=11% Similarity=-0.065 Sum_probs=54.9
Q ss_pred ccCcHHHHHHHHHHHHHhCCCC--CccHHHHHHHHhHhcCCHHHHHHHHHhc-------CCCHHHHHHHHHHHHhcCCHH
Q 007329 511 RIGALMCGKEIHAHALRIGVAF--DGFLPNALLDMYVRCGRMKPAWNQFNSN-------ERDVSAWNILLTGYAERGQGA 581 (608)
Q Consensus 511 ~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~ 581 (608)
+.|++..|.+.|...++..+.- .+..+-.|+..+...|++++|..+|..+ +.-+...--|.....+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 3455666666666666543331 1223334677777777777777777666 223556666677777777777
Q ss_pred HHHHHHHHHHHcCCCCCch
Q 007329 582 LAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 582 ~A~~~~~~m~~~g~~p~~~ 600 (608)
+|...|++..+. .|+.-
T Consensus 233 ~A~atl~qv~k~--YP~t~ 249 (262)
T COG1729 233 EACATLQQVIKR--YPGTD 249 (262)
T ss_pred HHHHHHHHHHHH--CCCCH
Confidence 777777777765 56554
No 238
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.85 E-value=1.5 Score=35.91 Aligned_cols=43 Identities=21% Similarity=0.258 Sum_probs=22.3
Q ss_pred hHHHHHHHHhCCChHHHHHHHHHHhhcCCCCChhhHHHHHHHhh
Q 007329 63 PNSRLNELCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCE 106 (608)
Q Consensus 63 ~~~ll~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~ 106 (608)
...++..+...+.+.....+++.+...+. .+....+.++..++
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~ 52 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYA 52 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHH
Confidence 44555555555566666666665554442 34444444444444
No 239
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.75 E-value=0.25 Score=44.28 Aligned_cols=110 Identities=15% Similarity=0.138 Sum_probs=77.8
Q ss_pred HHHHHccCC--CCCHhHHHHHHHHHHhc-----CChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcC-----------
Q 007329 251 ARLVFDGMP--KRDRISWNAMISGYFEN-----GEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVG----------- 312 (608)
Q Consensus 251 A~~~~~~~~--~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----------- 312 (608)
.++.|.... ++|-.+|-..+..+... +.++-....++.|.+-|+.-|..+|..|+..+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345566555 55777777777776543 456666677888899999999999999988764432
Q ss_pred -----ChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCC-hHHHHHHHhhCC
Q 007329 313 -----DEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGN-REEGEKVFSRME 360 (608)
Q Consensus 313 -----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~ 360 (608)
+-+-+.+++++|...|+-||-.+-..|++++.+.+- ..+..++.-.|.
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 345577888888888888888888888888887765 233444444443
No 240
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.75 E-value=0.28 Score=43.92 Aligned_cols=110 Identities=15% Similarity=0.184 Sum_probs=78.8
Q ss_pred HHHHHhhCC--CCChhhHHHHHHHHHc-----CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-----------
Q 007329 352 GEKVFSRME--SKDVVSWTTMISCYEG-----SVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLG----------- 413 (608)
Q Consensus 352 a~~~~~~~~--~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~----------- 413 (608)
.+..|.... +.|-.+|-..+..+.. .+.++=....++.|.+-|+.-|..+|..|++.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 344555555 4666777777776654 3455666677788999999999999999998776533
Q ss_pred -----ChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHH-HHHHHHccCC
Q 007329 414 -----NLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCID-KALEVFHQIP 461 (608)
Q Consensus 414 -----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~~~ 461 (608)
+-+-++.++++|...|+.||..+-..|++++++.+-.- +..++.-.|.
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 33557899999999999999999999999998876543 3333333333
No 241
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.72 E-value=3.1 Score=37.41 Aligned_cols=195 Identities=16% Similarity=0.080 Sum_probs=84.6
Q ss_pred hhHHHHHHHHHcCCCchHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 007329 365 VSWTTMISCYEGSVLPDKAVETYQMMEAE-GSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDM 443 (608)
Q Consensus 365 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 443 (608)
..+......+...+++..+...+...... ........+......+...++...+...+.........+ ..
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------- 130 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DL-------- 130 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-ch--------
Confidence 34444455555555555555555555432 112233344444444445555555555555544432222 11
Q ss_pred hHhcCCHHHHHHHHccCCCCCcccHHHHHH-HHHhCCCchHHHHHHHHhHhCCCC----CHHHHHHHHHHHhccCcHHHH
Q 007329 444 YSKCKCIDKALEVFHQIPDKNVISWTSIIL-GLRLNNRSFEALIFFRKMMLNLKP----NSVTLVSILSACARIGALMCG 518 (608)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~m~~~~~p----~~~~~~~ll~~~~~~~~~~~a 518 (608)
....... .+...|+++.|...+.+... ..| ....+......+...++.+.+
T Consensus 131 -----------------------~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a 186 (291)
T COG0457 131 -----------------------AEALLALGALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEA 186 (291)
T ss_pred -----------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHH
Confidence 1111111 34444444444444444432 222 122222222223444455555
Q ss_pred HHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007329 519 KEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN---ERD-VSAWNILLTGYAERGQGALAEEFFRKMID 592 (608)
Q Consensus 519 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 592 (608)
...+....+.........+..+...+...++++.|...+... .|+ ...+..+...+...|..+.+...+++...
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 187 LELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555444322212334444455555555555555555554 222 23333333333344445555555555544
No 242
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.70 E-value=2.8 Score=37.09 Aligned_cols=89 Identities=11% Similarity=0.052 Sum_probs=49.1
Q ss_pred CCCChh----HHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCCCC--hhhH
Q 007329 294 VDPDFM----TLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKD--VVSW 367 (608)
Q Consensus 294 ~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~ 367 (608)
.+||-. .|.....+|...+++++|...+....+. .+.+...|. ....++.|.-+.+++.+-+ +..|
T Consensus 23 wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~klsEvvdl~ 94 (308)
T KOG1585|consen 23 WKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKLSEVVDLY 94 (308)
T ss_pred cCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 455543 4555566777788888888777666532 122222221 1233455555666665521 2345
Q ss_pred HHHHHHHHcCCCchHHHHHHHHH
Q 007329 368 TTMISCYEGSVLPDKAVETYQMM 390 (608)
Q Consensus 368 ~~li~~~~~~~~~~~a~~~~~~m 390 (608)
+.-...|...|.++.|-..+++.
T Consensus 95 eKAs~lY~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 95 EKASELYVECGSPDTAAMALEKA 117 (308)
T ss_pred HHHHHHHHHhCCcchHHHHHHHH
Confidence 55566677777766666555554
No 243
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.67 E-value=3.8 Score=38.33 Aligned_cols=155 Identities=12% Similarity=0.027 Sum_probs=74.5
Q ss_pred HHHHHHHHhHhcCCHH---HHHHHHccCCC--CC-cccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHH
Q 007329 436 IANTLIDMYSKCKCID---KALEVFHQIPD--KN-VISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSAC 509 (608)
Q Consensus 436 ~~~~li~~~~~~g~~~---~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~ 509 (608)
+...++.+|...+..+ +|..+++.+.. ++ +..+-.-+..+.+.++.+++.+.+.+|+..+.-....+...+..+
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i 165 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHI 165 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 4455666666655544 33444444431 22 334444455555567777777777777744332333344444333
Q ss_pred hc--cCcHHHHHHHHHHHHHhCCCCCcc-HHH-HHHHH-h--Hhc------CCHHHHHHHHHhc------CCCHH-----
Q 007329 510 AR--IGALMCGKEIHAHALRIGVAFDGF-LPN-ALLDM-Y--VRC------GRMKPAWNQFNSN------ERDVS----- 565 (608)
Q Consensus 510 ~~--~~~~~~a~~~~~~~~~~~~~p~~~-~~~-~l~~~-~--~~~------g~~~~A~~~~~~~------~~~~~----- 565 (608)
.. ......+...+..+....+.|... ... .++.. + .+. ++++...++++.+ +-+..
T Consensus 166 ~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~ 245 (278)
T PF08631_consen 166 KQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAI 245 (278)
T ss_pred HHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 21 123345555555555444444332 111 11111 1 111 1144444445433 11222
Q ss_pred ---HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007329 566 ---AWNILLTGYAERGQGALAEEFFRKMI 591 (608)
Q Consensus 566 ---~~~~l~~~~~~~g~~~~A~~~~~~m~ 591 (608)
.|+. +..+.+.++++.|.++|+-..
T Consensus 246 ~~LLW~~-~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 246 HTLLWNK-GKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHH-HHHHHhhcCHHHHHHHHHHHH
Confidence 2333 234567889999999998544
No 244
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.62 E-value=0.43 Score=37.35 Aligned_cols=87 Identities=14% Similarity=-0.036 Sum_probs=59.9
Q ss_pred HHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHhHhcCCH
Q 007329 474 GLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGF---LPNALLDMYVRCGRM 550 (608)
Q Consensus 474 ~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~ 550 (608)
++...|+.+.|++.|.+.+.-.+.+...||.-..++.-+|+.++|++-++++.+..-.-+.. .|..-...|-..|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 56677888888888888775556677778888888888888888888888777653221222 222233456677888
Q ss_pred HHHHHHHHhc
Q 007329 551 KPAWNQFNSN 560 (608)
Q Consensus 551 ~~A~~~~~~~ 560 (608)
+.|..-|+..
T Consensus 132 d~AR~DFe~A 141 (175)
T KOG4555|consen 132 DAARADFEAA 141 (175)
T ss_pred HHHHHhHHHH
Confidence 8888877766
No 245
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.60 E-value=0.47 Score=45.13 Aligned_cols=94 Identities=10% Similarity=0.047 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc---CCC-HHHHHHHHHHH
Q 007329 499 SVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN---ERD-VSAWNILLTGY 574 (608)
Q Consensus 499 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~-~~~~~~l~~~~ 574 (608)
..+++.+..++.+.+++..|++..++.+..+.. +....--=..+|...|+++.|+..|+++ .|+ ..+-+.|+..-
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLK 335 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 346778888999999999999999999988765 5554445678899999999999999999 554 44444555544
Q ss_pred HhcCCH-HHHHHHHHHHHHc
Q 007329 575 AERGQG-ALAEEFFRKMIDS 593 (608)
Q Consensus 575 ~~~g~~-~~A~~~~~~m~~~ 593 (608)
.+.... +...++|..|...
T Consensus 336 ~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 444433 4457889888754
No 246
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.47 E-value=1.2 Score=35.07 Aligned_cols=137 Identities=16% Similarity=0.128 Sum_probs=70.3
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccc---hHHHHHHHhcCChH
Q 007329 274 FENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVC---NPLIKMYLSFGNRE 350 (608)
Q Consensus 274 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~ 350 (608)
.-.|..++..++..+.... .+..-++-+|--....-+-+- +++.+..-|-..|.... ..++.+|...|..
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~y---vv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~- 85 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDY---VVETLDSIGKIFDISKCGNLKRVIECYAKRNKL- 85 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHH---HHHHHHHHGGGS-GGG-S-THHHHHHHHHTT---
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhH---HHHHHHHHhhhcCchhhcchHHHHHHHHHhcch-
Confidence 3456666667776666543 244444444433333323222 23333333323333221 2233333333322
Q ss_pred HHHHHHhhCCCCChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCC
Q 007329 351 EGEKVFSRMESKDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGL 430 (608)
Q Consensus 351 ~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 430 (608)
.......+.....+|+-++-.+++.++...+ .+++.....+..+|.+.|+..++.+++.++-+.|+
T Consensus 86 -------------se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 86 -------------SEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp --------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred -------------HHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 2233445667778888888888888877533 67777888888888888888888888888887775
Q ss_pred C
Q 007329 431 I 431 (608)
Q Consensus 431 ~ 431 (608)
+
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 3
No 247
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.44 E-value=1.2 Score=41.72 Aligned_cols=23 Identities=17% Similarity=-0.025 Sum_probs=10.9
Q ss_pred HHHHHHHHHhccCcHHHHHHHHH
Q 007329 501 TLVSILSACARIGALMCGKEIHA 523 (608)
Q Consensus 501 ~~~~ll~~~~~~~~~~~a~~~~~ 523 (608)
++..|...|.+..++++|.-+..
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~ 186 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPC 186 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhH
Confidence 34444444555555555444433
No 248
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.44 E-value=0.99 Score=41.14 Aligned_cols=132 Identities=14% Similarity=0.020 Sum_probs=62.5
Q ss_pred hHhcCCHHHHHHHHccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHhH-hCCCCCHHHHHHHHHHHhccCcHHHHH
Q 007329 444 YSKCKCIDKALEVFHQIPD---KNVISWTSIILGLRLNNRSFEALIFFRKMM-LNLKPNSVTLVSILSACARIGALMCGK 519 (608)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~-~~~~p~~~~~~~ll~~~~~~~~~~~a~ 519 (608)
....|++.+|..+|+.... .+...--.++.+|...|+.+.|..++..+- +.-.........-+..+.+.....+..
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 4456666666666665542 223344455666666677766666666654 111111222122223333333333332
Q ss_pred HHHHHHHHhCCCC-CccHHHHHHHHhHhcCCHHHHHHHHHhc------CCCHHHHHHHHHHHHhcC
Q 007329 520 EIHAHALRIGVAF-DGFLPNALLDMYVRCGRMKPAWNQFNSN------ERDVSAWNILLTGYAERG 578 (608)
Q Consensus 520 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~------~~~~~~~~~l~~~~~~~g 578 (608)
.+-++.-. .| |...--.+...|...|+.++|.+.+-.+ -.|...-..|+..+...|
T Consensus 224 ~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 224 DLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 32222221 22 3444445566666666666666655444 223444555555555555
No 249
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.39 E-value=0.095 Score=32.69 Aligned_cols=33 Identities=27% Similarity=0.390 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 566 AWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 566 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
+|..+..+|...|++++|.++|++.++. .|++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~--~P~~~ 35 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL--DPDDP 35 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCH
Confidence 5666777777777777777777777775 66665
No 250
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.38 E-value=1.1 Score=35.32 Aligned_cols=139 Identities=15% Similarity=0.076 Sum_probs=67.3
Q ss_pred cCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHH
Q 007329 376 GSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALE 455 (608)
Q Consensus 376 ~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 455 (608)
-.|..++..+++.+.... .+..-++.+|--....-+-+-..+.++.+-+ -.|. ..+|++.....
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDi----------s~C~NlKrVi~ 77 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDI----------SKCGNLKRVIE 77 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-G----------GG-S-THHHHH
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCc----------hhhcchHHHHH
Confidence 356666666666666553 2444555555444444444444444333221 1111 12333333333
Q ss_pred HHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCC
Q 007329 456 VFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVA 531 (608)
Q Consensus 456 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 531 (608)
.+-.+-. +..-....+..+.+.|+-+.-.+++.++...-.+++.....+..||.+.|+..++.+++.++-+.|++
T Consensus 78 C~~~~n~-~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 78 CYAKRNK-LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHTT----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHhcc-hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3322211 11223344566777777777777777766455677777777778888888888888888777777654
No 251
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.23 E-value=8.2 Score=40.33 Aligned_cols=45 Identities=13% Similarity=0.145 Sum_probs=23.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCCh
Q 007329 235 VNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEY 279 (608)
Q Consensus 235 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~ 279 (608)
....|+.+.-.|++++|-...-.|...+..-|...+..+...++.
T Consensus 395 ~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l 439 (846)
T KOG2066|consen 395 GKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQL 439 (846)
T ss_pred HHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhcccccc
Confidence 344555555555555555555555555555555555555444443
No 252
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.03 E-value=1.5 Score=36.20 Aligned_cols=17 Identities=12% Similarity=0.036 Sum_probs=8.4
Q ss_pred hHhcCCHHHHHHHHHhc
Q 007329 544 YVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 544 ~~~~g~~~~A~~~~~~~ 560 (608)
+.+.|+|.+|..+|+++
T Consensus 54 ~i~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 54 HIVRGDWDDALRLLREL 70 (160)
T ss_pred HHHhCCHHHHHHHHHHH
Confidence 44445555555555544
No 253
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.02 E-value=0.17 Score=31.55 Aligned_cols=24 Identities=25% Similarity=0.134 Sum_probs=13.2
Q ss_pred HHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 537 PNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 537 ~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
+..+...|.+.|++++|.++++++
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~ 27 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRA 27 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444555555555555555555555
No 254
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=93.93 E-value=0.022 Score=47.22 Aligned_cols=86 Identities=14% Similarity=0.236 Sum_probs=59.2
Q ss_pred HHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhhcCChhhHHHHHcccCCCCcchHHHHHHHHHhcCChhH
Q 007329 100 NLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFGDLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDE 179 (608)
Q Consensus 100 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 179 (608)
.++..+.+.+.......+++.+...+...+....+.++..|++.++.++..++++.... .-...++..|.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 35666777777888888888888777666777788888888888777887777774322 334556666777777777
Q ss_pred HHHHHHHHH
Q 007329 180 ALSLYQRMF 188 (608)
Q Consensus 180 a~~~~~~m~ 188 (608)
+.-++.++.
T Consensus 89 a~~Ly~~~~ 97 (143)
T PF00637_consen 89 AVYLYSKLG 97 (143)
T ss_dssp HHHHHHCCT
T ss_pred HHHHHHHcc
Confidence 777776643
No 255
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.87 E-value=2.4 Score=34.76 Aligned_cols=84 Identities=7% Similarity=0.015 Sum_probs=36.9
Q ss_pred HHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCC
Q 007329 470 SIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGR 549 (608)
Q Consensus 470 ~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 549 (608)
.++..+.+.+.......+++.+......+....+.++..+++.+ ..+.++.++. ..+.......+..+.+.|.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence 34444444455555555555555111234445555555554432 2222222221 1122223334455555555
Q ss_pred HHHHHHHHHhc
Q 007329 550 MKPAWNQFNSN 560 (608)
Q Consensus 550 ~~~A~~~~~~~ 560 (608)
++++.-++.++
T Consensus 85 ~~~~~~l~~k~ 95 (140)
T smart00299 85 YEEAVELYKKD 95 (140)
T ss_pred HHHHHHHHHhh
Confidence 55555555554
No 256
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.72 E-value=3.9 Score=41.55 Aligned_cols=158 Identities=10% Similarity=0.026 Sum_probs=100.5
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHHHc----cCChHHHHHHHHHHHHhCCCCchhHH
Q 007329 368 TTMISCYEGSVLPDKAVETYQMMEAEG-SMPDE-----ITIASVLSACAC----LGNLDLGIKLHQLAMRTGLISYIIIA 437 (608)
Q Consensus 368 ~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~-----~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 437 (608)
..++....-.||-+.+++.+.+..+.+ +.-.. ..|..++..++. ..+.+.+.++++.+.+. -|+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 334445555667777777766655432 22111 234444444433 45677888888888765 3444444
Q ss_pred H-HHHHHhHhcCCHHHHHHHHccCCCC-------CcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHH
Q 007329 438 N-TLIDMYSKCKCIDKALEVFHQIPDK-------NVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSAC 509 (608)
Q Consensus 438 ~-~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~ 509 (608)
. .-.+.+...|++++|.+.|++.... ....+--+.-++.-..++++|.+.|.++.+.-..+..+|..+..+|
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 3 3345567789999999999975531 2234455667788899999999999999965566666776666555
Q ss_pred -hccCcH-------HHHHHHHHHHHH
Q 007329 510 -ARIGAL-------MCGKEIHAHALR 527 (608)
Q Consensus 510 -~~~~~~-------~~a~~~~~~~~~ 527 (608)
...|+. ++|.+++.++..
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHHH
Confidence 345666 788888887653
No 257
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.65 E-value=6.1 Score=36.81 Aligned_cols=111 Identities=8% Similarity=-0.074 Sum_probs=44.6
Q ss_pred CChHHHHHHHhhCCC---CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHccCChHHHH
Q 007329 347 GNREEGEKVFSRMES---KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIA----SVLSACACLGNLDLGI 419 (608)
Q Consensus 347 ~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~----~ll~~~~~~~~~~~a~ 419 (608)
|+..+|-..++++.+ .|...++-.-.++.-.|+.+.-...++++... ..||...|. .+.-++...|-+++|+
T Consensus 117 g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dAE 195 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDAE 195 (491)
T ss_pred ccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhHH
Confidence 444444444444433 23444444444455555555444444444432 112221111 1111223344455554
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHcc
Q 007329 420 KLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQ 459 (608)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 459 (608)
+.-++..+.+ +.|.-...++...+.-.|++.++.++..+
T Consensus 196 k~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 196 KQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 4444444333 22333333334444444445555444443
No 258
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.59 E-value=2.7 Score=35.30 Aligned_cols=135 Identities=17% Similarity=0.050 Sum_probs=79.4
Q ss_pred HHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhhcCChhhHHHHHcccCCC
Q 007329 80 LKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFGDLGHAWYVFGKMCDR 159 (608)
Q Consensus 80 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 159 (608)
++.++.+.+.|+.|+...+..+++.+.+.|++..-.++ +..++-+|.......+-.+. +....+.++=-.|.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 55667777778888888888888888888876554444 55555555443333332221 2223333333333222
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHH
Q 007329 160 DLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIR 225 (608)
Q Consensus 160 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 225 (608)
=...+..++..+...|++-+|+++.+..... +......++.+..+.+|...-..+++-..+
T Consensus 88 L~~~~~~iievLL~~g~vl~ALr~ar~~~~~-----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 LGTAYEEIIEVLLSKGQVLEALRYARQYHKV-----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc-----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2335677778888888888888888775322 222334566666666666555555554444
No 259
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.56 E-value=0.78 Score=35.95 Aligned_cols=88 Identities=18% Similarity=0.089 Sum_probs=70.2
Q ss_pred HHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc-----CCCHH---HHHHHHHHHHhcC
Q 007329 507 SACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN-----ERDVS---AWNILLTGYAERG 578 (608)
Q Consensus 507 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~~~---~~~~l~~~~~~~g 578 (608)
-+....|+++.|++.|.+.+..-++ .+..||.-..+|--.|+.++|++-+++. ..... .|.--...|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 4567889999999999999987666 7888999999999999999999999887 22222 3333444578889
Q ss_pred CHHHHHHHHHHHHHcCC
Q 007329 579 QGALAEEFFRKMIDSKG 595 (608)
Q Consensus 579 ~~~~A~~~~~~m~~~g~ 595 (608)
+.+.|..-|+..-+.|-
T Consensus 130 ~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGS 146 (175)
T ss_pred chHHHHHhHHHHHHhCC
Confidence 99999999998877653
No 260
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=93.38 E-value=1.6 Score=38.30 Aligned_cols=52 Identities=13% Similarity=0.067 Sum_probs=39.9
Q ss_pred HHHhc-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch-hhhhcccC
Q 007329 556 QFNSN-ERDVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL-MGLFRKCQ 608 (608)
Q Consensus 556 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~~ac~ 608 (608)
+|+-+ .|.+.....++..|. .+++++|.+++.++.+.|+.|.++ ..++|.|+
T Consensus 230 VfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Dii~~~FRv~K 283 (333)
T KOG0991|consen 230 VFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDIITTLFRVVK 283 (333)
T ss_pred hhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 33334 777888888887765 468899999999999999999888 67777663
No 261
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.30 E-value=0.097 Score=30.90 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007329 566 AWNILLTGYAERGQGALAEEFFRKMI 591 (608)
Q Consensus 566 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 591 (608)
+|..|...|.+.|++++|++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46677778888888888888888754
No 262
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=93.08 E-value=10 Score=37.65 Aligned_cols=179 Identities=15% Similarity=0.080 Sum_probs=128.3
Q ss_pred CCCCCcchHHHHHHHHhCCChHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhH
Q 007329 56 SSIATKNPNSRLNELCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNA 135 (608)
Q Consensus 56 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 135 (608)
.|..+...-+++..+..+.++.-...+..+|...| -+.-.|..++.+|... .-+.-..+|+.+.+..+. |+..-..
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~Re 137 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRE 137 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHH
Confidence 34445556778888888999999999999998866 5777888999999887 667778888888888765 4444455
Q ss_pred HHHHhhhcCChhhHHHHHcccCC------CCc---chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHH
Q 007329 136 FLSMFVKFGDLGHAWYVFGKMCD------RDL---FSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRT 206 (608)
Q Consensus 136 l~~~~~~~g~~~~A~~~~~~~~~------~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~ 206 (608)
|...|-+ ++.+.+...|.+... .+. ..|.-|+..- ..+.+..+.+..++....|..--...+..+-.-
T Consensus 138 La~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 138 LADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 6655554 888888888887722 111 2455554421 356777888888877766566666777777788
Q ss_pred hcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 007329 207 CGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMY 242 (608)
Q Consensus 207 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 242 (608)
|....++.+|.+++..+.+.. ..|..+...++..+
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 215 YSENENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred hccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 889999999999999888775 44555555555544
No 263
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.94 E-value=7.4 Score=35.74 Aligned_cols=141 Identities=13% Similarity=0.093 Sum_probs=88.2
Q ss_pred HHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCC----cccHHHHHHHHHhCCCchH
Q 007329 408 ACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKN----VISWTSIILGLRLNNRSFE 483 (608)
Q Consensus 408 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~ 483 (608)
.....|++..|..+|+...... +-+...--.+..+|...|+.+.|..++..++... ......-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 3456778888888888777654 3335555677888888899999998888887321 1122223444555555554
Q ss_pred HHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHh--CCCCCccHHHHHHHHhHhcCCHH
Q 007329 484 ALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRI--GVAFDGFLPNALLDMYVRCGRMK 551 (608)
Q Consensus 484 A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~ 551 (608)
...+-++.- .-+-|...-..+...+...|+.+.|.+.+=.+.+. |.. |...-..|++.+..-|.-+
T Consensus 222 ~~~l~~~~a-adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 222 IQDLQRRLA-ADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPAD 289 (304)
T ss_pred HHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCC
Confidence 444444443 33346667777888888889999888766655433 333 5555566666666555433
No 264
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.77 E-value=0.67 Score=41.79 Aligned_cols=94 Identities=18% Similarity=0.151 Sum_probs=67.1
Q ss_pred HHhHHHHHhhhcCChhhHHHHHcccCC--C----CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC-cchHHHHH
Q 007329 132 LGNAFLSMFVKFGDLGHAWYVFGKMCD--R----DLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPD-VYTFPCVL 204 (608)
Q Consensus 132 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ll 204 (608)
.|+.-+..+ +.|++..|...|....+ | ...++-.|...+...|++++|..+|..+.+..+-.|- +..+.-|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 577666544 66778888888887744 2 2345677888888888888888888888875422222 25566666
Q ss_pred HHhcCCCChhhHHHHHHHHHHh
Q 007329 205 RTCGGVPDLKRGKEVHVHVIRF 226 (608)
Q Consensus 205 ~~~~~~~~~~~a~~~~~~~~~~ 226 (608)
.+..+.|+.++|..+|+++++.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 7777788888888888887776
No 265
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.68 E-value=7.3 Score=35.03 Aligned_cols=179 Identities=15% Similarity=0.091 Sum_probs=90.7
Q ss_pred hhHHhHHHHHhhhcCChhhHHHHHcccCC--C----CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHH
Q 007329 130 VRLGNAFLSMFVKFGDLGHAWYVFGKMCD--R----DLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCV 203 (608)
Q Consensus 130 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 203 (608)
...|+.-+. -.+.|++++|.+.|+.+.. | ...+--.++-++.+.++++.|+..+++..+..+-.||. .|..-
T Consensus 35 ~~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~Y 112 (254)
T COG4105 35 SELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYY 112 (254)
T ss_pred HHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHH
Confidence 344444433 3366888888888887733 2 12344456667778888888888888877765333432 33333
Q ss_pred HHHhcC-------CCChhhHHHHHHH---HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHH
Q 007329 204 LRTCGG-------VPDLKRGKEVHVH---VIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGY 273 (608)
Q Consensus 204 l~~~~~-------~~~~~~a~~~~~~---~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 273 (608)
|.+++. .+|...+.+-+.. ++.. -||. .=...|..-...+...=...=-.+.+-|
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r--yPnS-------------~Ya~dA~~~i~~~~d~LA~~Em~IaryY 177 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQR--YPNS-------------RYAPDAKARIVKLNDALAGHEMAIARYY 177 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHH--CCCC-------------cchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333331 1233333333322 2222 1110 0011111111110000000011245667
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCh---hHHHHHHHHHhhcCChhhHHHHHHHHHH
Q 007329 274 FENGEYMKGLMLFIMMREVLVDPDF---MTLSSVISASELVGDEKLGREVHGYVIK 326 (608)
Q Consensus 274 ~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 326 (608)
.+.|.+..|..-+++|.+. .+-+. ..+-.+..+|...|-.++|...-..+..
T Consensus 178 ~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 178 LKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 8888888888888888776 22222 3345556677777777777766555443
No 266
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.44 E-value=0.45 Score=27.35 Aligned_cols=32 Identities=28% Similarity=0.414 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 007329 565 SAWNILLTGYAERGQGALAEEFFRKMIDSKGNWR 598 (608)
Q Consensus 565 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 598 (608)
..|..+...+...|++++|++.|++.++. .|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l--~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL--DPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CcC
Confidence 35777888888888888888888888874 665
No 267
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.43 E-value=3.1 Score=33.83 Aligned_cols=48 Identities=6% Similarity=-0.197 Sum_probs=24.3
Q ss_pred cCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 512 IGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 512 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
.++++++..++..+.-..++ ....-..-+..+...|+|++|..+|+++
T Consensus 23 ~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l 70 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILREL 70 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhh
Confidence 55566666666655544333 1111111233455666666666666666
No 268
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.43 E-value=9.3 Score=35.64 Aligned_cols=111 Identities=14% Similarity=-0.012 Sum_probs=46.6
Q ss_pred CChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHh---CCCCchhHHHHHHHHHHhcCCHHHH
Q 007329 175 GFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRF---GYEADVDVVNALITMYVKCGDLVRA 251 (608)
Q Consensus 175 g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~li~~~~~~g~~~~A 251 (608)
|+..+|...++++.+. .+-|...++..-.+|.-.|+.+.-+..+++++.. +++-...+...+.-++..+|-+++|
T Consensus 117 g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred ccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 4444444444444433 2344444444444444444444444444443322 1111112222223333445555555
Q ss_pred HHHHccCCCC---CHhHHHHHHHHHHhcCChhHHHHHHH
Q 007329 252 RLVFDGMPKR---DRISWNAMISGYFENGEYMKGLMLFI 287 (608)
Q Consensus 252 ~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~ 287 (608)
++.-++..+- |...-.++...+--.|++.++.++..
T Consensus 195 Ek~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 195 EKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMY 233 (491)
T ss_pred HHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHH
Confidence 5555444332 33344444444555555555555443
No 269
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.43 E-value=1.4 Score=41.15 Aligned_cols=89 Identities=13% Similarity=0.038 Sum_probs=49.3
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhCC-----CCCccHHHHHHHHhHhcCCHHHHHHHHHhc-------C-CC------
Q 007329 503 VSILSACARIGALMCGKEIHAHALRIGV-----AFDGFLPNALLDMYVRCGRMKPAWNQFNSN-------E-RD------ 563 (608)
Q Consensus 503 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~------ 563 (608)
.++..++...+.++++++.|+.+.+..- .....++-.|...|.+..|+++|.-+..++ . .|
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 3455566666677777777776654321 122345666777777777777665554443 1 12
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007329 564 VSAWNILLTGYAERGQGALAEEFFRKMI 591 (608)
Q Consensus 564 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 591 (608)
..+...+.-++...|....|.+..++..
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~ 233 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAM 233 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 1233344555666666666666665543
No 270
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.35 E-value=0.14 Score=29.69 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=10.3
Q ss_pred CccHHHHHHHHhHhcCCHHHH
Q 007329 533 DGFLPNALLDMYVRCGRMKPA 553 (608)
Q Consensus 533 ~~~~~~~l~~~~~~~g~~~~A 553 (608)
+...|..|...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 444444455555555555444
No 271
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.31 E-value=3.8 Score=33.20 Aligned_cols=81 Identities=14% Similarity=0.092 Sum_probs=60.3
Q ss_pred hHHHHHHHHhCCChHHHHHHHHHHhhcCCCC--ChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHh
Q 007329 63 PNSRLNELCLNGSLEQALKYLDSMQELNICV--DEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMF 140 (608)
Q Consensus 63 ~~~ll~~~~~~~~~~~A~~~~~~~~~~g~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (608)
+..-.....+.|++++|.+.|+.+..+-+.. ...+-..++.++.+.+++++|...++..++..+.....-|...+.++
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL 92 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 4455667788999999999999998753322 34556677889999999999999999999988765555555555555
Q ss_pred hhc
Q 007329 141 VKF 143 (608)
Q Consensus 141 ~~~ 143 (608)
+.-
T Consensus 93 ~~~ 95 (142)
T PF13512_consen 93 SYY 95 (142)
T ss_pred HHH
Confidence 443
No 272
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.25 E-value=0.46 Score=27.40 Aligned_cols=32 Identities=19% Similarity=0.272 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 007329 565 SAWNILLTGYAERGQGALAEEFFRKMIDSKGNWR 598 (608)
Q Consensus 565 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 598 (608)
.+|..+...|...|++++|++.|++.++. .|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL--DPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH--CcC
Confidence 46788888888889999999998888874 654
No 273
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.23 E-value=1.5 Score=36.46 Aligned_cols=49 Identities=16% Similarity=0.108 Sum_probs=25.4
Q ss_pred hhcCChhhHHHHHcccCCCCcchHHHHHH-----HHHhcCChhHHHHHHHHHHh
Q 007329 141 VKFGDLGHAWYVFGKMCDRDLFSWNVLIG-----GYAKAGFFDEALSLYQRMFW 189 (608)
Q Consensus 141 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~-----~~~~~g~~~~a~~~~~~m~~ 189 (608)
++.+..++|+..|..+.+.+-..|-.|.. ...+.|+...|...|+++-.
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~ 122 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAA 122 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhc
Confidence 34455566666666555544444443322 23445566666666665544
No 274
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.97 E-value=2.6 Score=39.61 Aligned_cols=76 Identities=12% Similarity=0.002 Sum_probs=44.6
Q ss_pred hHHHHHHHHhH-hCCCCC-HH-HHHHHHHHHhccCc--HHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHH
Q 007329 482 FEALIFFRKMM-LNLKPN-SV-TLVSILSACARIGA--LMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQ 556 (608)
Q Consensus 482 ~~A~~~~~~m~-~~~~p~-~~-~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 556 (608)
+.+..+|+.+. .|+..+ .. ....++..+..... ..++.++++.+.+.|+++....|..++-.-.-.+..++..+-
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~~~~~ 239 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEKIVEE 239 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHHHHHH
Confidence 44666777777 466553 32 33333333332222 457888899999999999888888765544333433243333
Q ss_pred H
Q 007329 557 F 557 (608)
Q Consensus 557 ~ 557 (608)
+
T Consensus 240 i 240 (297)
T PF13170_consen 240 I 240 (297)
T ss_pred H
Confidence 3
No 275
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=91.66 E-value=20 Score=37.91 Aligned_cols=50 Identities=22% Similarity=0.165 Sum_probs=36.0
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCC
Q 007329 160 DLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVP 211 (608)
Q Consensus 160 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~ 211 (608)
|....-.+|-.|.+.|++++|.++..+.... .......+...+..+....
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~--~~~~~~~f~~~l~~~~~s~ 159 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEVANENRNQ--FQKIERSFPTYLKAYASSP 159 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHHHHHTGGG--S-TTTTHHHHHHHHCTTTT
T ss_pred CCCccHHHHHHHHhcCCHHHHHHHHHHhhhh--hcchhHHHHHHHHHHHhCC
Confidence 3444556788889999999999999666543 4666778888888887753
No 276
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=91.60 E-value=16 Score=36.43 Aligned_cols=57 Identities=18% Similarity=0.142 Sum_probs=34.9
Q ss_pred HHHHHHHhCCCchHHHHHHHHhHhCCCC--CHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 007329 470 SIILGLRLNNRSFEALIFFRKMMLNLKP--NSVTLVSILSACARIGALMCGKEIHAHAL 526 (608)
Q Consensus 470 ~l~~~~~~~~~~~~A~~~~~~m~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 526 (608)
.+..++.+.|+.++|++.+++|.+..++ +......|+.++...+.+.++..++.+.-
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 3555566667777777777776633333 23355566667777777777776666654
No 277
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=91.56 E-value=17 Score=36.90 Aligned_cols=127 Identities=9% Similarity=0.103 Sum_probs=56.1
Q ss_pred HHhHHHHHhhhcCChhhHHHHHcccCC--CCcch-HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhc
Q 007329 132 LGNAFLSMFVKFGDLGHAWYVFGKMCD--RDLFS-WNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCG 208 (608)
Q Consensus 132 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~ 208 (608)
.++.+|.---...+.+.+..+++.+.. |...- |-.....=.+.|..+.+.++|++-... ++-+...|...+..++
T Consensus 47 ~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a--ip~SvdlW~~Y~~f~~ 124 (577)
T KOG1258|consen 47 AWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA--IPLSVDLWLSYLAFLK 124 (577)
T ss_pred chHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHh
Confidence 344444433333444555555555532 33222 222233334556666666666666532 4444444444443332
Q ss_pred -CCCChhhHHHHHHHHHHh-CCC-CchhHHHHHHHHHHhcCCHHHHHHHHccCCC
Q 007329 209 -GVPDLKRGKEVHVHVIRF-GYE-ADVDVVNALITMYVKCGDLVRARLVFDGMPK 260 (608)
Q Consensus 209 -~~~~~~~a~~~~~~~~~~-g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 260 (608)
..|+.+.....|+..+.. |.. .....|...|..-..++++.....+++++.+
T Consensus 125 n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 125 NNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred ccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 334555555555554443 211 1223334444444444444444444444443
No 278
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.32 E-value=9 Score=36.03 Aligned_cols=50 Identities=12% Similarity=0.080 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhhcCCCCChhhHHHHHHHhhc--c----CCchhhhHHHHHHHHhcC
Q 007329 77 EQALKYLDSMQELNICVDEDALVNLVRLCEW--K----RGYDEGLYLHSVVSKTMS 126 (608)
Q Consensus 77 ~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~--~----~~~~~a~~~~~~~~~~~~ 126 (608)
++.+.+++.|.+.|+.-+..+|.+..-.... . .....+..+++.|.+..+
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~ 134 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHP 134 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCc
Confidence 3445566777777777666666554333322 1 123456666666666554
No 279
>PRK11906 transcriptional regulator; Provisional
Probab=91.23 E-value=4.3 Score=39.94 Aligned_cols=145 Identities=11% Similarity=0.061 Sum_probs=91.2
Q ss_pred ChHHHHHHHHHHH-HhCCCCc-hhHHHHHHHHhHh---------cCCHHHHHHHHccCCC---CCcccHHHHHHHHHhCC
Q 007329 414 NLDLGIKLHQLAM-RTGLISY-IIIANTLIDMYSK---------CKCIDKALEVFHQIPD---KNVISWTSIILGLRLNN 479 (608)
Q Consensus 414 ~~~~a~~~~~~~~-~~~~~~~-~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~ 479 (608)
..+.|..+|.+.. ...+.|+ ...|..+..++.. .....+|.++-++..+ .|......+..++.-.+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 4567788888777 2333444 3334433333221 2334456666655543 45566666777777788
Q ss_pred CchHHHHHHHHhHhCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCC-ccHHHHHHHHhHhcCCHHHHHHHH
Q 007329 480 RSFEALIFFRKMMLNLKPN-SVTLVSILSACARIGALMCGKEIHAHALRIGVAFD-GFLPNALLDMYVRCGRMKPAWNQF 557 (608)
Q Consensus 480 ~~~~A~~~~~~m~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 557 (608)
+++.|...|++.. .+.|| ..+|......+.-.|+.++|.+.+++..+..+.-- ..+....++.|+. ..++.|..++
T Consensus 353 ~~~~a~~~f~rA~-~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 430 (458)
T PRK11906 353 QAKVSHILFEQAK-IHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNIKLY 430 (458)
T ss_pred chhhHHHHHHHHh-hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC-CchhhhHHHH
Confidence 8999999999998 45554 55677777777889999999999999877654322 2223334456664 4567777766
Q ss_pred Hhc
Q 007329 558 NSN 560 (608)
Q Consensus 558 ~~~ 560 (608)
-+-
T Consensus 431 ~~~ 433 (458)
T PRK11906 431 YKE 433 (458)
T ss_pred hhc
Confidence 543
No 280
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=91.05 E-value=8 Score=40.87 Aligned_cols=86 Identities=14% Similarity=0.174 Sum_probs=35.5
Q ss_pred HHHHHHhcCChHHHHHHHhhCC--CCChhhHHHHHHHHHcCCCchHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHc---c
Q 007329 339 LIKMYLSFGNREEGEKVFSRME--SKDVVSWTTMISCYEGSVLPDKAVETYQMMEAEG-SMPDEITIASVLSACAC---L 412 (608)
Q Consensus 339 l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~---~ 412 (608)
....+.-.|+++.|.+++-+.. ..|.+.+-+.+.-|.-.+-.+... ..+.... -.|...-+..||..|.+ .
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYRNEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT--T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhhccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 4456677788888888887722 234444443333221111111111 2222111 01112456777777765 4
Q ss_pred CChHHHHHHHHHHHH
Q 007329 413 GNLDLGIKLHQLAMR 427 (608)
Q Consensus 413 ~~~~~a~~~~~~~~~ 427 (608)
.+...|.+++-.+..
T Consensus 341 td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 341 TDPREALQYLYLICL 355 (613)
T ss_dssp T-HHHHHHHHHGGGG
T ss_pred cCHHHHHHHHHHHHH
Confidence 566677776655443
No 281
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=90.88 E-value=17 Score=35.54 Aligned_cols=128 Identities=14% Similarity=0.086 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhC-CCCchhHHHHHHHHhHhcCCHHHHHHHHccCC--CCCcccH-HHHHHHH
Q 007329 400 ITIASVLSACACLGNLDLGIKLHQLAMRTG-LISYIIIANTLIDMYSKCKCIDKALEVFHQIP--DKNVISW-TSIILGL 475 (608)
Q Consensus 400 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~-~~l~~~~ 475 (608)
..|...++...+..-++.|..+|.+..+.+ +.+++.++++++.-++ .|+..-|..+|+--. -+|...| +-.+.-+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 455666677777777778888888777777 5677777777776554 566777777777543 2444333 3345556
Q ss_pred HhCCCchHHHHHHHHhHhCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 007329 476 RLNNRSFEALIFFRKMMLNLKPN--SVTLVSILSACARIGALMCGKEIHAHALRI 528 (608)
Q Consensus 476 ~~~~~~~~A~~~~~~m~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 528 (608)
..-++-+.|..+|+..+..+..+ ...|..++.--..-|++..+..+-+++.+.
T Consensus 477 i~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 477 IRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 66777777777777666444444 556777777777777777776666666543
No 282
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=90.84 E-value=23 Score=37.02 Aligned_cols=26 Identities=8% Similarity=0.075 Sum_probs=14.8
Q ss_pred HHHHHHHhcCCCChhhHHHHHHHHHH
Q 007329 200 FPCVLRTCGGVPDLKRGKEVHVHVIR 225 (608)
Q Consensus 200 ~~~ll~~~~~~~~~~~a~~~~~~~~~ 225 (608)
|..+..++.-..+.+.+.++++.+.+
T Consensus 213 y~~vc~c~v~Ldd~~~va~ll~kL~~ 238 (929)
T KOG2062|consen 213 YFSVCQCYVFLDDAEAVADLLEKLVK 238 (929)
T ss_pred eeeeeeeeEEcCCHHHHHHHHHHHHh
Confidence 33445555556666666666666555
No 283
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=90.80 E-value=21 Score=36.39 Aligned_cols=98 Identities=11% Similarity=0.059 Sum_probs=55.3
Q ss_pred HHhCCChHHHHHHHHHHhhcCCCCChhhHHHHHHHh-hccCCchhhhHHHHHHHHhc-CC-cchhHHhHHHHHhhhcCCh
Q 007329 70 LCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLC-EWKRGYDEGLYLHSVVSKTM-SH-LSVRLGNAFLSMFVKFGDL 146 (608)
Q Consensus 70 ~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~-~~~~~~~~a~~~~~~~~~~~-~~-~~~~~~~~l~~~~~~~g~~ 146 (608)
-.+-|..+.+.++|++-.. |++.+...|...+..+ ...|+.+.....|+.....- .+ .....|...|..-..++++
T Consensus 89 E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~ 167 (577)
T KOG1258|consen 89 EYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSW 167 (577)
T ss_pred HHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccH
Confidence 3456777777777777665 5555666666665533 34556666666665554432 11 2334555666655566667
Q ss_pred hhHHHHHcccCCCCcchHHHHH
Q 007329 147 GHAWYVFGKMCDRDLFSWNVLI 168 (608)
Q Consensus 147 ~~A~~~~~~~~~~~~~~~~~li 168 (608)
.....+++.+.+-....|+..-
T Consensus 168 k~v~~iyeRileiP~~~~~~~f 189 (577)
T KOG1258|consen 168 KRVANIYERILEIPLHQLNRHF 189 (577)
T ss_pred HHHHHHHHHHHhhhhhHhHHHH
Confidence 7777777766554444444433
No 284
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.50 E-value=0.48 Score=27.87 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=20.4
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 536 LPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
+|..|..+|.+.|++++|.+++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3677889999999999999999874
No 285
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=90.37 E-value=16 Score=36.28 Aligned_cols=148 Identities=13% Similarity=0.041 Sum_probs=80.1
Q ss_pred hHHHHHHHHhCCChHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhh
Q 007329 63 PNSRLNELCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVK 142 (608)
Q Consensus 63 ~~~ll~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (608)
-..++..--+..+...-++.-++.++ +.||-.+...++ +--......++++++++..+.|-..=.. .... ..
T Consensus 171 Aq~IMq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~~lg~--s~~~---~~ 242 (539)
T PF04184_consen 171 AQEIMQKAWRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGEASLGK--SQFL---QH 242 (539)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHHhhch--hhhh---hc
Confidence 45667777777888887777777766 335433322222 2223445778888888877765310000 0000 01
Q ss_pred cCChhhHHHHHcccCCCC----cchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHH
Q 007329 143 FGDLGHAWYVFGKMCDRD----LFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKE 218 (608)
Q Consensus 143 ~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 218 (608)
.|.. .+....++ ..+-..+..++-+.|+.++|++.+++|.+..+..-+......|+.++...+.+.++..
T Consensus 243 ~g~~------~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~ 316 (539)
T PF04184_consen 243 HGHF------WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQA 316 (539)
T ss_pred ccch------hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHH
Confidence 1111 11112222 2222345556667888888888888887654111122345566666777777777766
Q ss_pred HHHHHH
Q 007329 219 VHVHVI 224 (608)
Q Consensus 219 ~~~~~~ 224 (608)
++.+-.
T Consensus 317 lL~kYd 322 (539)
T PF04184_consen 317 LLAKYD 322 (539)
T ss_pred HHHHhc
Confidence 666643
No 286
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=90.08 E-value=16 Score=34.11 Aligned_cols=159 Identities=9% Similarity=0.024 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHccCChH---HHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCC---CcccHHHHHH
Q 007329 400 ITIASVLSACACLGNLD---LGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDK---NVISWTSIIL 473 (608)
Q Consensus 400 ~t~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~ 473 (608)
.++..++.++...+..+ +|..+++.+.... +..+.++-.-+..+.+.++.+++.+.+.+|... ....+..++.
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~ 163 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHH
Confidence 35666677777666544 4455555554322 223444445566666677888888888877632 2344555555
Q ss_pred HHH--hCCCchHHHHHHHHhH-hCCCCCHH-HHH-HHH---HHHhccC------cHHHHHHHHHHHHH-hCCCCCccHHH
Q 007329 474 GLR--LNNRSFEALIFFRKMM-LNLKPNSV-TLV-SIL---SACARIG------ALMCGKEIHAHALR-IGVAFDGFLPN 538 (608)
Q Consensus 474 ~~~--~~~~~~~A~~~~~~m~-~~~~p~~~-~~~-~ll---~~~~~~~------~~~~a~~~~~~~~~-~~~~p~~~~~~ 538 (608)
.+. .......|...+..++ ..+.|... ... .++ ......+ ..+...++++.+.+ .+.+.+..+-.
T Consensus 164 ~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~ 243 (278)
T PF08631_consen 164 HIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAAS 243 (278)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 442 2233456777777777 55555443 111 111 1112221 14444455554332 23333333333
Q ss_pred HHH-------HHhHhcCCHHHHHHHHHh
Q 007329 539 ALL-------DMYVRCGRMKPAWNQFNS 559 (608)
Q Consensus 539 ~l~-------~~~~~~g~~~~A~~~~~~ 559 (608)
++. ....+.+++++|.+.|+-
T Consensus 244 a~~~LLW~~~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 244 AIHTLLWNKGKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 322 345678899999988863
No 287
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=90.04 E-value=36 Score=37.90 Aligned_cols=114 Identities=17% Similarity=0.081 Sum_probs=63.2
Q ss_pred HHHHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHH
Q 007329 438 NTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMC 517 (608)
Q Consensus 438 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~ 517 (608)
.-.++.-.+.|.+.+|+.++..-.+.--..|.+...-+.+...+++|.-+|+..- -..--+.+|...|++.+
T Consensus 912 ~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~G--------klekAl~a~~~~~dWr~ 983 (1265)
T KOG1920|consen 912 PECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCG--------KLEKALKAYKECGDWRE 983 (1265)
T ss_pred HHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhc--------cHHHHHHHHHHhccHHH
Confidence 3344444555666666665543333333445555555666677777766666542 01224556667777777
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 518 GKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 518 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
|+.+..++..-.-+ -..+-..|+.-+...++.-+|-++....
T Consensus 984 ~l~~a~ql~~~~de-~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 984 ALSLAAQLSEGKDE-LVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHHHHhhcCCHHH-HHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 77776655321100 0112245666677777777777777665
No 288
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.91 E-value=2.8 Score=42.14 Aligned_cols=153 Identities=16% Similarity=0.122 Sum_probs=104.9
Q ss_pred HHHhCCChHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhhcCChhh
Q 007329 69 ELCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFGDLGH 148 (608)
Q Consensus 69 ~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 148 (608)
.+.-.|+++.|-.++..+. ...-+.+...+..+|-.++|+++ ...|+. -.....+.|+++.
T Consensus 595 t~vmrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~-------s~D~d~-----rFelal~lgrl~i 655 (794)
T KOG0276|consen 595 TLVLRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALEL-------STDPDQ-----RFELALKLGRLDI 655 (794)
T ss_pred HHhhhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhc-------CCChhh-----hhhhhhhcCcHHH
Confidence 4455777777766555443 23445666667777777766554 333332 2334457899998
Q ss_pred HHHHHcccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhCC
Q 007329 149 AWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGY 228 (608)
Q Consensus 149 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 228 (608)
|.++..+. .+..-|..|.++..+.|++..|.+.|.+... |..|+-.+...|+-+....+-....+.|.
T Consensus 656 A~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d----------~~~LlLl~t~~g~~~~l~~la~~~~~~g~ 723 (794)
T KOG0276|consen 656 AFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD----------LGSLLLLYTSSGNAEGLAVLASLAKKQGK 723 (794)
T ss_pred HHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc----------hhhhhhhhhhcCChhHHHHHHHHHHhhcc
Confidence 88876654 4566799999999999999999999988654 34566677777877766666666666663
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHccC
Q 007329 229 EADVDVVNALITMYVKCGDLVRARLVFDGM 258 (608)
Q Consensus 229 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 258 (608)
. |....+|...|+++++.+++..-
T Consensus 724 ~------N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 724 N------NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred c------chHHHHHHHcCCHHHHHHHHHhc
Confidence 2 44455677888998888887654
No 289
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.81 E-value=2.6 Score=36.11 Aligned_cols=92 Identities=11% Similarity=-0.062 Sum_probs=44.6
Q ss_pred HHHHHHHHhCCCchHHHHHHHHhH-hCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCc-cHHH--HH--
Q 007329 469 TSIILGLRLNNRSFEALIFFRKMM-LNLKPN--SVTLVSILSACARIGALMCGKEIHAHALRIGVAFDG-FLPN--AL-- 540 (608)
Q Consensus 469 ~~l~~~~~~~~~~~~A~~~~~~m~-~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~--~l-- 540 (608)
..+..-|++.|+.++|++.|.++. ....+. ...+..+++.....+++..+...+.++...--..+. ..-+ ..
T Consensus 40 ~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~ 119 (177)
T PF10602_consen 40 EDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYE 119 (177)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 334444555555555555555554 112222 223445556666666666666666655533222111 1111 11
Q ss_pred HHHhHhcCCHHHHHHHHHhc
Q 007329 541 LDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 541 ~~~~~~~g~~~~A~~~~~~~ 560 (608)
+-.+...|++.+|-+.|-.+
T Consensus 120 gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 120 GLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHhchHHHHHHHHHcc
Confidence 11234567888888877666
No 290
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.81 E-value=3.9 Score=37.64 Aligned_cols=102 Identities=16% Similarity=0.120 Sum_probs=75.2
Q ss_pred hCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCC-CCh-----hhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHH
Q 007329 327 MGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMES-KDV-----VSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEI 400 (608)
Q Consensus 327 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 400 (608)
.|.+....+...++..-....+++++...+-++.. ++. .+-.+.++ ++-.-++++++.++..=++-|+-||..
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~ir-lllky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIR-LLLKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHH-HHHccChHHHHHHHhCcchhccccchh
Confidence 35555666667777777777889999988877765 211 11111222 233446678999888888999999999
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhC
Q 007329 401 TIASVLSACACLGNLDLGIKLHQLAMRTG 429 (608)
Q Consensus 401 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 429 (608)
++..+|..+.+.+++..|.++...|....
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999999999999988777654
No 291
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=89.29 E-value=23 Score=34.68 Aligned_cols=126 Identities=9% Similarity=0.074 Sum_probs=88.0
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHccCCC-----CCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHH
Q 007329 434 IIIANTLIDMYSKCKCIDKALEVFHQIPD-----KNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSA 508 (608)
Q Consensus 434 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~ 508 (608)
..+|..+++...+..-++.|+.+|-+..+ +++..++++|.-++ .|+...|..+|+--+..++.+..-..-.+.-
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34566777777888888999999988763 56778888887666 4677788888887764454444444556677
Q ss_pred HhccCcHHHHHHHHHHHHHhCCC-CCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 509 CARIGALMCGKEIHAHALRIGVA-FDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 509 ~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
+...++-+.|..+|+..++.--. --..+|..+|+-=.+-|++..|..+=+++
T Consensus 476 Li~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf 528 (660)
T COG5107 476 LIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERF 528 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHH
Confidence 77888888888888855432111 01457777887777788887777666555
No 292
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=89.15 E-value=23 Score=34.51 Aligned_cols=55 Identities=16% Similarity=0.094 Sum_probs=35.8
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhH-hcCCHHHHHHHHHhc
Q 007329 506 LSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYV-RCGRMKPAWNQFNSN 560 (608)
Q Consensus 506 l~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~ 560 (608)
+..+.+.|.+..|.++.+-+...++.-|+.....+|+.|+ ++++++--+++.+..
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 3455666777777777777777666666666666677664 556666666666554
No 293
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.09 E-value=4.8 Score=33.35 Aligned_cols=18 Identities=17% Similarity=0.121 Sum_probs=8.4
Q ss_pred hHhcCCHHHHHHHHccCC
Q 007329 444 YSKCKCIDKALEVFHQIP 461 (608)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~ 461 (608)
+.+.|++++|..+|+++.
T Consensus 54 ~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELE 71 (160)
T ss_pred HHHhCCHHHHHHHHHHHh
Confidence 334444444444444444
No 294
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.88 E-value=16 Score=32.34 Aligned_cols=16 Identities=13% Similarity=0.119 Sum_probs=8.7
Q ss_pred cCCHHHHHHHHHHHHH
Q 007329 577 RGQGALAEEFFRKMID 592 (608)
Q Consensus 577 ~g~~~~A~~~~~~m~~ 592 (608)
.|++.+|+.+|++...
T Consensus 167 leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 167 LEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3555555555555544
No 295
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.84 E-value=8.7 Score=32.99 Aligned_cols=87 Identities=11% Similarity=0.093 Sum_probs=61.7
Q ss_pred HHHHhCCCchHHHHHHHHhHhCCCCC-----HHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhc
Q 007329 473 LGLRLNNRSFEALIFFRKMMLNLKPN-----SVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRC 547 (608)
Q Consensus 473 ~~~~~~~~~~~A~~~~~~m~~~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 547 (608)
.-+.+.|++++|..-|.+.+..+++. .+.|..-..++.+.+.++.|..-...+++.++... .....-..+|.+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~-kAl~RRAeayek~ 181 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYE-KALERRAEAYEKM 181 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhH-HHHHHHHHHHHhh
Confidence 34567788888888888887555543 33455556677888889988888888888765422 2222334578888
Q ss_pred CCHHHHHHHHHhc
Q 007329 548 GRMKPAWNQFNSN 560 (608)
Q Consensus 548 g~~~~A~~~~~~~ 560 (608)
.++++|++-++++
T Consensus 182 ek~eealeDyKki 194 (271)
T KOG4234|consen 182 EKYEEALEDYKKI 194 (271)
T ss_pred hhHHHHHHHHHHH
Confidence 9999999999888
No 296
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.72 E-value=2.8 Score=38.53 Aligned_cols=65 Identities=17% Similarity=0.227 Sum_probs=39.3
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCch
Q 007329 536 LPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKMID-----SKGNWRKL 600 (608)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~ 600 (608)
++..++..+...|+.+.+.+.+++. +-|...|..++.+|.+.|+...|+..|+++.+ .|+.|...
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~ 228 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPE 228 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHH
Confidence 3444566666666666666666665 33556666666666666666666666665543 35555444
No 297
>PRK09687 putative lyase; Provisional
Probab=88.65 E-value=21 Score=33.38 Aligned_cols=36 Identities=8% Similarity=0.048 Sum_probs=16.9
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007329 370 MISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSA 408 (608)
Q Consensus 370 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 408 (608)
.+.++...|+ .+|+..+..+.+. .||...-...+.+
T Consensus 241 a~~ALg~ig~-~~a~p~L~~l~~~--~~d~~v~~~a~~a 276 (280)
T PRK09687 241 IIEAAGELGD-KTLLPVLDTLLYK--FDDNEIITKAIDK 276 (280)
T ss_pred HHHHHHhcCC-HhHHHHHHHHHhh--CCChhHHHHHHHH
Confidence 4445555555 3455555555543 2344444333333
No 298
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=88.62 E-value=1.4 Score=36.37 Aligned_cols=86 Identities=9% Similarity=0.012 Sum_probs=50.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCC
Q 007329 269 MISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGN 348 (608)
Q Consensus 269 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 348 (608)
++..+.+.+.......+++.+...+...+....+.++..|++.++.+...++++ ..+..-...++..+.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~-------~~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK-------TSNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT-------SSSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc-------cccccCHHHHHHHHHhcch
Confidence 344555566666677777777766555566667777777777766666666655 1122333556666666666
Q ss_pred hHHHHHHHhhCCC
Q 007329 349 REEGEKVFSRMES 361 (608)
Q Consensus 349 ~~~a~~~~~~~~~ 361 (608)
++++.-++.++..
T Consensus 86 ~~~a~~Ly~~~~~ 98 (143)
T PF00637_consen 86 YEEAVYLYSKLGN 98 (143)
T ss_dssp HHHHHHHHHCCTT
T ss_pred HHHHHHHHHHccc
Confidence 6666666655543
No 299
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=88.43 E-value=5.2 Score=29.83 Aligned_cols=86 Identities=22% Similarity=0.204 Sum_probs=58.8
Q ss_pred chhhhHHHHHHHHhcCCcchhHHhHHHHHhhhcCChhhHHHHHcccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 007329 111 YDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFGDLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWV 190 (608)
Q Consensus 111 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 190 (608)
.++|.-+-+.+...+.. ...+--.-+..+...|++++|..+.+.++.||...|-+|-. .+.|-.+++..-+.+|...
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 45666666665554422 22222233456678899999999999999999999987755 4677777788888888777
Q ss_pred CCCCCCcchHH
Q 007329 191 GGVKPDVYTFP 201 (608)
Q Consensus 191 ~~~~p~~~~~~ 201 (608)
| .|....|.
T Consensus 98 g--~p~lq~Fa 106 (115)
T TIGR02508 98 G--DPRLQTFV 106 (115)
T ss_pred C--CHHHHHHH
Confidence 6 55555553
No 300
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.41 E-value=1.3 Score=26.79 Aligned_cols=28 Identities=29% Similarity=0.386 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007329 565 SAWNILLTGYAERGQGALAEEFFRKMID 592 (608)
Q Consensus 565 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 592 (608)
.+++.|...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678888888888888888888888764
No 301
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=88.38 E-value=0.95 Score=25.65 Aligned_cols=30 Identities=23% Similarity=0.236 Sum_probs=22.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 007329 567 WNILLTGYAERGQGALAEEFFRKMIDSKGNWR 598 (608)
Q Consensus 567 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 598 (608)
+-.+..++.+.|++++|.+.|+++++. .|+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~--~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKR--YPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHH--STT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH--CcC
Confidence 345666777888888888888888876 565
No 302
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.28 E-value=11 Score=38.29 Aligned_cols=151 Identities=16% Similarity=0.090 Sum_probs=92.8
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 007329 173 KAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRAR 252 (608)
Q Consensus 173 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 252 (608)
-.|+++.|..++..+. ...-+.+...+.+.|-.++|+++ .+|.... .....+.|+++.|.
T Consensus 598 mrrd~~~a~~vLp~I~--------k~~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~ 657 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIP--------KEIRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAF 657 (794)
T ss_pred hhccccccccccccCc--------hhhhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHH
Confidence 3456666555443322 22334455556666666666554 2232221 22335668888888
Q ss_pred HHHccCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCC
Q 007329 253 LVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDD 332 (608)
Q Consensus 253 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 332 (608)
++..+.. +..-|..|.++....+++..|.+.|.+..+ |..|+-.+...|+.+....+-....+.|
T Consensus 658 ~la~e~~--s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g---- 722 (794)
T KOG0276|consen 658 DLAVEAN--SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG---- 722 (794)
T ss_pred HHHHhhc--chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc----
Confidence 7765543 566788888888888888888888876654 5566667777777776666666655555
Q ss_pred cccchHHHHHHHhcCChHHHHHHHhhCC
Q 007329 333 VSVCNPLIKMYLSFGNREEGEKVFSRME 360 (608)
Q Consensus 333 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 360 (608)
..|....+|...|+++++.+++.+-.
T Consensus 723 --~~N~AF~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 723 --KNNLAFLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred --ccchHHHHHHHcCCHHHHHHHHHhcC
Confidence 23445556677777777777765543
No 303
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.17 E-value=14 Score=30.93 Aligned_cols=48 Identities=17% Similarity=0.199 Sum_probs=25.6
Q ss_pred HhcCCHHHHHHHHccCCCCCcccHHHHH-----HHHHhCCCchHHHHHHHHhH
Q 007329 445 SKCKCIDKALEVFHQIPDKNVISWTSII-----LGLRLNNRSFEALIFFRKMM 492 (608)
Q Consensus 445 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~A~~~~~~m~ 492 (608)
.+.+..++|+.-|..+.+.+.-.|-.|. ....+.|+...|...|.++-
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia 121 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIA 121 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHh
Confidence 3455566666666666555544444432 22345555555666665554
No 304
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.16 E-value=38 Score=35.78 Aligned_cols=171 Identities=11% Similarity=0.112 Sum_probs=88.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCC---cchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 007329 168 IGGYAKAGFFDEALSLYQRMFWVGGVKPD---VYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVK 244 (608)
Q Consensus 168 i~~~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 244 (608)
|+-+.+.+.+++|++..+.-. |..|. .......|..+...|++++|-...-.|... +..-|..-+..+..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~---~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e 435 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASI---GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAE 435 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhcc---CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcc
Confidence 444566777777777666543 23332 234555666677777777777666666532 33444444444555
Q ss_pred cCCHHHHHHHHccCCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHH
Q 007329 245 CGDLVRARLVFDGMPKR-DRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGY 323 (608)
Q Consensus 245 ~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 323 (608)
.|+......++=.-..+ +...|..++..+.. .+. ..+++..... +...|..+.-.-+.. .+
T Consensus 436 ~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~---~~F~e~i~~W----p~~Lys~l~iisa~~----------~q 497 (846)
T KOG2066|consen 436 LDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDV---KGFLELIKEW----PGHLYSVLTIISATE----------PQ 497 (846)
T ss_pred ccccchhhccCCCCCcccCchHHHHHHHHHHH-HHH---HHHHHHHHhC----ChhhhhhhHHHhhcc----------hH
Confidence 55544433332222221 66788888888776 222 2222222221 222232221111111 11
Q ss_pred HHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCCCChh
Q 007329 324 VIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVV 365 (608)
Q Consensus 324 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 365 (608)
..+. .-+...-..|+..|...+++++|...+-...++++.
T Consensus 498 ~~q~--Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~vf 537 (846)
T KOG2066|consen 498 IKQN--SESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDVF 537 (846)
T ss_pred HHhh--ccchhHHHHHHHHHHHccChHHHHHHHHhccChHHH
Confidence 1111 111222334888999999999999999888876554
No 305
>PRK11619 lytic murein transglycosylase; Provisional
Probab=88.13 E-value=40 Score=35.94 Aligned_cols=410 Identities=8% Similarity=-0.052 Sum_probs=207.9
Q ss_pred HHHHHhCCChHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCc-chhHHhHHHHHhhhcCC
Q 007329 67 LNELCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHL-SVRLGNAFLSMFVKFGD 145 (608)
Q Consensus 67 l~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 145 (608)
.....++|++..+..+...+...-+ ..-..|..+...+. ...++ ++-.-+.+..-.| ....-...+..+.+.++
T Consensus 40 A~~a~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l~-~~~~~---ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~ 114 (644)
T PRK11619 40 IKQAWDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDLM-NQPAV---QVTNFIRANPTLPPARSLQSRFVNELARRED 114 (644)
T ss_pred HHHHHHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhccc-cCCHH---HHHHHHHHCCCCchHHHHHHHHHHHHHHccC
Confidence 4456788999988777776643111 11222322222221 11233 3323333333223 23334455566777888
Q ss_pred hhhHHHHHcccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHH
Q 007329 146 LGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIR 225 (608)
Q Consensus 146 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 225 (608)
+......+.. +..+...-.....+....|+.++|.+....+-..| ......+..++..+. +
T Consensus 115 w~~~~~~~~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g--~~~p~~cd~l~~~~~----------------~ 175 (644)
T PRK11619 115 WRGLLAFSPE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG--KSLPNACDKLFSVWQ----------------Q 175 (644)
T ss_pred HHHHHHhcCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--CCCChHHHHHHHHHH----------------H
Confidence 8888873333 33444445566777888899888888887776665 233344555554444 4
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHH
Q 007329 226 FGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVI 305 (608)
Q Consensus 226 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 305 (608)
.|.-.+...+.. +......|+...|..+...+..........++..+.+ ...+..++.. +.|+...-..++
T Consensus 176 ~g~lt~~d~w~R-~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~---p~~~~~~~~~-----~~~~~~~~~~~~ 246 (644)
T PRK11619 176 SGKQDPLAYLER-IRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQND---PNTVETFART-----TGPTDFTRQMAA 246 (644)
T ss_pred cCCCCHHHHHHH-HHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHC---HHHHHHHhhc-----cCCChhhHHHHH
Confidence 443333334433 3444577888888888887743222233344443332 2222222211 112321111111
Q ss_pred HHHh--hcCChhhHHHHHHHHHHhC-CCCCc--ccchHHHHHHHhcCChHHHHHHHhhCCC--CChhhHHHHHHHHHcCC
Q 007329 306 SASE--LVGDEKLGREVHGYVIKMG-FSDDV--SVCNPLIKMYLSFGNREEGEKVFSRMES--KDVVSWTTMISCYEGSV 378 (608)
Q Consensus 306 ~~~~--~~~~~~~a~~~~~~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~ 378 (608)
.++. ...+.+.|...+....... +.+.. .+...+.......+...++...++.... .+.......+..-.+.+
T Consensus 247 ~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~ 326 (644)
T PRK11619 247 VAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTG 326 (644)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHcc
Confidence 1221 3445688888888764443 22221 2233343333333335677777776544 24444444555555888
Q ss_pred CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHc
Q 007329 379 LPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFH 458 (608)
Q Consensus 379 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 458 (608)
+++.+...+..|.... .-...-.-.+.+++...|+.+.|..+|+.+.. .. ..|..|..- +.|..-. +.
T Consensus 327 dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~~--~fYG~LAa~--~Lg~~~~----~~ 394 (644)
T PRK11619 327 DRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---QR--GFYPMVAAQ--RLGEEYP----LK 394 (644)
T ss_pred CHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---CC--CcHHHHHHH--HcCCCCC----CC
Confidence 8888888888875532 22344455666776778999999988888643 12 234333221 1221100 00
Q ss_pred cCCCCCc------ccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 007329 459 QIPDKNV------ISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHA 523 (608)
Q Consensus 459 ~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 523 (608)
....+.. ..--.-+..+...|+...|...+..+... .+......+.....+.|.++.+.....
T Consensus 395 ~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~--~~~~~~~~la~~A~~~g~~~~ai~~~~ 463 (644)
T PRK11619 395 IDKAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVAS--RSKTEQAQLARYAFNQQWWDLSVQATI 463 (644)
T ss_pred CCCCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCHHHHHHHHh
Confidence 0000000 01112234556667777777777666633 233334444444455566666655443
No 306
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.88 E-value=3.8 Score=37.71 Aligned_cols=73 Identities=8% Similarity=0.026 Sum_probs=33.1
Q ss_pred HHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH-----HhCCCCCccHHHHHHHH
Q 007329 471 IILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHAL-----RIGVAFDGFLPNALLDM 543 (608)
Q Consensus 471 l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-----~~~~~p~~~~~~~l~~~ 543 (608)
++..+...|+.+.+.+.+++...-.+-+...|..++.+|.+.|+...|+..|+.+. +.|+.|...+...+...
T Consensus 159 lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~~~ 236 (280)
T COG3629 159 LAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYEEI 236 (280)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHH
Confidence 33344444444444444444443333344444444444444444444444444433 34555555544444333
No 307
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=87.71 E-value=1.1 Score=41.52 Aligned_cols=43 Identities=14% Similarity=0.046 Sum_probs=20.1
Q ss_pred hHhcCCHHHHHHHHccCC--CC-CcccHHHHHHHHHhCCCchHHHH
Q 007329 444 YSKCKCIDKALEVFHQIP--DK-NVISWTSIILGLRLNNRSFEALI 486 (608)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~A~~ 486 (608)
|.+.|.+++|+..|.... .| |++++..-..+|.+.+++..|..
T Consensus 107 yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~ 152 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEE 152 (536)
T ss_pred hhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHH
Confidence 455555555555555433 12 44444444444444444444433
No 308
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=87.66 E-value=20 Score=31.89 Aligned_cols=94 Identities=18% Similarity=0.126 Sum_probs=55.2
Q ss_pred cccchHHHHHHHhcCChHHHHHHHhhCCC-----CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007329 333 VSVCNPLIKMYLSFGNREEGEKVFSRMES-----KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLS 407 (608)
Q Consensus 333 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 407 (608)
...+......+...+++..+...+..... .....+......+...+++..+...+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 34555566666666666666666655432 3334455555566666677777777777776543331 11222222
Q ss_pred -HHHccCChHHHHHHHHHHHH
Q 007329 408 -ACACLGNLDLGIKLHQLAMR 427 (608)
Q Consensus 408 -~~~~~~~~~~a~~~~~~~~~ 427 (608)
.+...|+++.+...+.....
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~ 158 (291)
T COG0457 138 GALYELGDYEEALELYEKALE 158 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh
Confidence 56677777777777777644
No 309
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=87.64 E-value=3.4 Score=35.87 Aligned_cols=77 Identities=12% Similarity=-0.016 Sum_probs=59.9
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCC--CCccHHHHHHHH
Q 007329 467 SWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVA--FDGFLPNALLDM 543 (608)
Q Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--p~~~~~~~l~~~ 543 (608)
+.+..+..+.+.+...+|+...+.-++..+.|..+-..++..++-.|++++|..-++-.-+..+. +....|..+|++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 45666788899999999999999888666667788888999999999999999888877655433 334566666654
No 310
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=87.41 E-value=30 Score=33.81 Aligned_cols=71 Identities=11% Similarity=0.077 Sum_probs=56.1
Q ss_pred hHHHHHHHhcCChHHHHHHHhhCCCC---ChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 007329 337 NPLIKMYLSFGNREEGEKVFSRMESK---DVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACAC 411 (608)
Q Consensus 337 ~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 411 (608)
..|+.-|...|++.+|...++++.-| ..+.+.+++.+.-+.|+-...+.++++....|.. |.+.+-.+|.+
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglI----T~nQMtkGf~R 586 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLI----TTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCce----eHHHhhhhhhh
Confidence 45778888999999999999998875 5578899999999999888888888888877643 45555566554
No 311
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=87.38 E-value=16 Score=30.70 Aligned_cols=134 Identities=13% Similarity=0.146 Sum_probs=74.4
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCC
Q 007329 419 IKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPN 498 (608)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~ 498 (608)
.++++.+.+.+++++...+..+++.+.+.|++..-..++.- ++-+|
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~----------------------------------~Vi~D 59 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY----------------------------------HVIPD 59 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh----------------------------------cccCC
Confidence 34455556677777777888888888777777666665543 22233
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHH-HhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc-CCCHHHHHHHHHHHHh
Q 007329 499 SVTLVSILSACARIGALMCGKEIHAHAL-RIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN-ERDVSAWNILLTGYAE 576 (608)
Q Consensus 499 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~l~~~~~~ 576 (608)
.......+-.+.. .+..+.++--.|. +.+ ..+..+++.+...|++-+|..+.++. .-+......++.+...
T Consensus 60 Sk~lA~~LLs~~~--~~~~~~Ql~lDMLkRL~-----~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~ 132 (167)
T PF07035_consen 60 SKPLACQLLSLGN--QYPPAYQLGLDMLKRLG-----TAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAAN 132 (167)
T ss_pred cHHHHHHHHHhHc--cChHHHHHHHHHHHHhh-----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHH
Confidence 3322222211111 1222222211221 211 13345677778888888888888775 4444444566777777
Q ss_pred cCCHHHHHHHHHHHHHc
Q 007329 577 RGQGALAEEFFRKMIDS 593 (608)
Q Consensus 577 ~g~~~~A~~~~~~m~~~ 593 (608)
.+|...-..+++-..+.
T Consensus 133 ~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 133 SNDDQLFYAVFRFFEER 149 (167)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77766666666655544
No 312
>PRK09687 putative lyase; Provisional
Probab=87.22 E-value=26 Score=32.79 Aligned_cols=57 Identities=4% Similarity=-0.031 Sum_probs=31.4
Q ss_pred CccHHHHHHHHhHhcCCHHHHHHHHHhc--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 533 DGFLPNALLDMYVRCGRMKPAWNQFNSN--ERDVSAWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 533 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
+..+-...+.++++.|+. .|...+-+. .++ .....+.++...|+. +|...+.++.+.
T Consensus 205 ~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~ 263 (280)
T PRK09687 205 NEEIRIEAIIGLALRKDK-RVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK 263 (280)
T ss_pred ChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh
Confidence 445555556666666663 344443333 222 234556666777764 577777777654
No 313
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=86.85 E-value=23 Score=32.72 Aligned_cols=60 Identities=12% Similarity=0.158 Sum_probs=36.6
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHccCCC-----CCHhHHHHHHHHHHhcCChhHHHHHHH
Q 007329 228 YEADVDVVNALITMYVKCGDLVRARLVFDGMPK-----RDRISWNAMISGYFENGEYMKGLMLFI 287 (608)
Q Consensus 228 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~ 287 (608)
-.++..+...++..++..+++.+-.++++.... .|...|..+|+...+.|+..-...+.+
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 355555666666666666666666666665433 266667777777777777554444433
No 314
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=86.78 E-value=7.8 Score=33.24 Aligned_cols=92 Identities=12% Similarity=0.055 Sum_probs=68.0
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCc--cHHHHHHHHhHhcCCHHHHHHHHHhc-----CC-CHHHHH--H
Q 007329 500 VTLVSILSACARIGALMCGKEIHAHALRIGVAFDG--FLPNALLDMYVRCGRMKPAWNQFNSN-----ER-DVSAWN--I 569 (608)
Q Consensus 500 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~-~~~~~~--~ 569 (608)
..+..+...|.+.|+.+.|.+.+.++.+....+.. ..+-.+|....-.|++..+...+.++ .. |...-+ .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 46778899999999999999999999987666543 44567888889999999999998887 22 222111 1
Q ss_pred HHH--HHHhcCCHHHHHHHHHHHH
Q 007329 570 LLT--GYAERGQGALAEEFFRKMI 591 (608)
Q Consensus 570 l~~--~~~~~g~~~~A~~~~~~m~ 591 (608)
... .+...|++..|.+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 111 3456789999988877664
No 315
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.42 E-value=4.4 Score=37.31 Aligned_cols=99 Identities=12% Similarity=0.052 Sum_probs=64.4
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCC---------CHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 007329 226 FGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKR---------DRISWNAMISGYFENGEYMKGLMLFIMMREVLVDP 296 (608)
Q Consensus 226 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 296 (608)
.|......+...++..-....+++.+...+-.+... ...+|- +.+ -.-+.++++-++..=.+-|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~i---rll-lky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWI---RLL-LKYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHH---HHH-HccChHHHHHHHhCcchhcccc
Confidence 344445555555555555566677777666555432 222222 222 2345667888887778888888
Q ss_pred ChhHHHHHHHHHhhcCChhhHHHHHHHHHHhC
Q 007329 297 DFMTLSSVISASELVGDEKLGREVHGYVIKMG 328 (608)
Q Consensus 297 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 328 (608)
|.++++.+|..+.+.+++..|..+.-.|+...
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 88888888888888888888888877766554
No 316
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.26 E-value=25 Score=31.77 Aligned_cols=172 Identities=14% Similarity=0.156 Sum_probs=91.3
Q ss_pred ChHHHHHHHhhCCC----C---ChhhHHHHHHHHHcCCCchHHHHHHHHHHHC---CC--CCCHHHHHHHHHHHHccCCh
Q 007329 348 NREEGEKVFSRMES----K---DVVSWTTMISCYEGSVLPDKAVETYQMMEAE---GS--MPDEITIASVLSACACLGNL 415 (608)
Q Consensus 348 ~~~~a~~~~~~~~~----~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~--~p~~~t~~~ll~~~~~~~~~ 415 (608)
++++|+.-|+++.+ . .....-.+|..+.+.+++++.++.+.+|..- .+ .-+..+.+.++...+...+.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 45555555554433 1 1223344566666666666666666665421 01 12344566666666655555
Q ss_pred HHHHHHHHHHHH-----hCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC------------CC---cccHHHHHHHH
Q 007329 416 DLGIKLHQLAMR-----TGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPD------------KN---VISWTSIILGL 475 (608)
Q Consensus 416 ~~a~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------~~---~~~~~~l~~~~ 475 (608)
+.-.++++.-.+ .+-..-..+-..|...|...|.+.+..+++.++.. +. ...|..-|..|
T Consensus 122 ~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmY 201 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMY 201 (440)
T ss_pred HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhh
Confidence 555555543221 11112223334566667777777777666666541 11 13455566777
Q ss_pred HhCCCchHHHHHHHHhH--hCCCCCHHHHHHHHHHH-----hccCcHHHHHH
Q 007329 476 RLNNRSFEALIFFRKMM--LNLKPNSVTLVSILSAC-----ARIGALMCGKE 520 (608)
Q Consensus 476 ~~~~~~~~A~~~~~~m~--~~~~p~~~~~~~ll~~~-----~~~~~~~~a~~ 520 (608)
...++-.+-..+|+..+ ...-|.+... .+++-| .+.|.+++|..
T Consensus 202 T~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 202 TEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred hhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHh
Confidence 77777777777777776 4444544433 334433 45677777654
No 317
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=85.76 E-value=36 Score=33.06 Aligned_cols=53 Identities=21% Similarity=0.204 Sum_probs=25.1
Q ss_pred HHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCC
Q 007329 305 ISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMES 361 (608)
Q Consensus 305 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 361 (608)
..+.-+.|+++...++....... .++..++.++... ..++.+++...++....
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence 34555666666644444433211 1233333333322 55666666666655543
No 318
>PRK11619 lytic murein transglycosylase; Provisional
Probab=85.74 E-value=53 Score=35.00 Aligned_cols=114 Identities=13% Similarity=-0.048 Sum_probs=68.7
Q ss_pred CCCchHHHHHHHHHHHCC-CCCCH--HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHH
Q 007329 377 SVLPDKAVETYQMMEAEG-SMPDE--ITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKA 453 (608)
Q Consensus 377 ~~~~~~a~~~~~~m~~~g-~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 453 (608)
..+.+.|..++....... ..++. .....+.......+..+.+...++...... .+......-+..-.+.++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 455688888988875443 32222 223334333333332556666666543222 2444445555566688999999
Q ss_pred HHHHccCCC--CCcccH-HHHHHHHHhCCCchHHHHHHHHhH
Q 007329 454 LEVFHQIPD--KNVISW-TSIILGLRLNNRSFEALIFFRKMM 492 (608)
Q Consensus 454 ~~~~~~~~~--~~~~~~-~~l~~~~~~~~~~~~A~~~~~~m~ 492 (608)
...+..|.. .+..-| .=+..++...|+.++|...|+...
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 999998863 122222 235566677899999999999874
No 319
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=85.51 E-value=1.2 Score=25.84 Aligned_cols=25 Identities=24% Similarity=0.243 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHH
Q 007329 561 ERDVSAWNILLTGYAERGQGALAEE 585 (608)
Q Consensus 561 ~~~~~~~~~l~~~~~~~g~~~~A~~ 585 (608)
+.|...|..+...|...|++++|++
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 5578999999999999999999863
No 320
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=85.12 E-value=17 Score=30.83 Aligned_cols=72 Identities=15% Similarity=0.060 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcC----C-------HHHHHHHHHhc---CCCHHHHHHHHHHHHhcCCHH
Q 007329 516 MCGKEIHAHALRIGVAFDGFLPNALLDMYVRCG----R-------MKPAWNQFNSN---ERDVSAWNILLTGYAERGQGA 581 (608)
Q Consensus 516 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g----~-------~~~A~~~~~~~---~~~~~~~~~l~~~~~~~g~~~ 581 (608)
++|..-|++++..++. ....+..++.+|...+ + +++|.+.|+++ +|+...|+.-+....
T Consensus 52 edAisK~eeAL~I~P~-~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~------ 124 (186)
T PF06552_consen 52 EDAISKFEEALKINPN-KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAA------ 124 (186)
T ss_dssp HHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH------
T ss_pred HHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH------
Confidence 3444445555554443 3355666777665443 2 45555566655 888888887776653
Q ss_pred HHHHHHHHHHHcC
Q 007329 582 LAEEFFRKMIDSK 594 (608)
Q Consensus 582 ~A~~~~~~m~~~g 594 (608)
.|-++..++.+.+
T Consensus 125 kap~lh~e~~~~~ 137 (186)
T PF06552_consen 125 KAPELHMEIHKQG 137 (186)
T ss_dssp THHHHHHHHHHSS
T ss_pred hhHHHHHHHHHHH
Confidence 3556666665554
No 321
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=85.07 E-value=11 Score=28.00 Aligned_cols=61 Identities=7% Similarity=0.104 Sum_probs=45.9
Q ss_pred ChHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHH-hcCCcchhHHhHHH
Q 007329 75 SLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSK-TMSHLSVRLGNAFL 137 (608)
Q Consensus 75 ~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~ 137 (608)
+.-++.+-++.+....+.|++....+.+++|.+.+++..|.++++-+.. .+. +...|..++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~l 83 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYIL 83 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHH
Confidence 5556777778888888889999999999999999999999999887663 332 333555444
No 322
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=84.47 E-value=2.2 Score=24.36 Aligned_cols=28 Identities=29% Similarity=0.324 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 566 AWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 566 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
+|..+...|...|++++|.+.|++..+.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5666777777788888888888777663
No 323
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=84.18 E-value=66 Score=34.75 Aligned_cols=54 Identities=15% Similarity=0.120 Sum_probs=29.3
Q ss_pred HcCCCchHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHh
Q 007329 375 EGSVLPDKAVETYQMMEAE----GSMPDEITIASVLSACACLGNLDLGIKLHQLAMRT 428 (608)
Q Consensus 375 ~~~~~~~~a~~~~~~m~~~----g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 428 (608)
...|++++|.++.+..... -..+....+..+..+..-.|+++.|..+.....+.
T Consensus 469 l~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 469 LNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred HhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHH
Confidence 3456666666665554432 12233444555555555666677766666655543
No 324
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=84.03 E-value=3.2 Score=23.69 Aligned_cols=26 Identities=19% Similarity=0.138 Sum_probs=10.5
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHH
Q 007329 502 LVSILSACARIGALMCGKEIHAHALR 527 (608)
Q Consensus 502 ~~~ll~~~~~~~~~~~a~~~~~~~~~ 527 (608)
|..+..++...|++++|...++++++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 33334444444444444444444443
No 325
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=83.41 E-value=1.9 Score=24.57 Aligned_cols=24 Identities=21% Similarity=0.180 Sum_probs=12.1
Q ss_pred HHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 537 PNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 537 ~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
+..+...|...|++++|.+.|+++
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~a 27 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKA 27 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 334455555555555555555544
No 326
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=83.41 E-value=52 Score=32.99 Aligned_cols=167 Identities=10% Similarity=0.057 Sum_probs=90.7
Q ss_pred CCCcccchHHHHHHHhcCChHHHHHHHhhCCC--CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007329 330 SDDVSVCNPLIKMYLSFGNREEGEKVFSRMES--KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLS 407 (608)
Q Consensus 330 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 407 (608)
..|....-+++..+.....+.-++.+..+|.. .+-..|..++.+|... ..++-..+++++.+..+. |...-..|..
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 44666666777777777777777777777765 4556677777888777 447777777777775432 3333333333
Q ss_pred HHHccCChHHHHHHHHHHHHhCCCC-----chhHHHHHHHHhHhcCCHHHHHHHHccCCCC-----CcccHHHHHHHHHh
Q 007329 408 ACACLGNLDLGIKLHQLAMRTGLIS-----YIIIANTLIDMYSKCKCIDKALEVFHQIPDK-----NVISWTSIILGLRL 477 (608)
Q Consensus 408 ~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~ 477 (608)
.| ..++.+.+..+|..+...-++- -...|..|...- ..+.|....+..++... ..+.+.-+-.-|..
T Consensus 141 ~y-Ekik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KY-EKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HH-HHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 33 3377777777777666443221 112333333211 23444444444444422 12233333444555
Q ss_pred CCCchHHHHHHHHhHhCCCCCHHH
Q 007329 478 NNRSFEALIFFRKMMLNLKPNSVT 501 (608)
Q Consensus 478 ~~~~~~A~~~~~~m~~~~~p~~~~ 501 (608)
..++++|++++..+++.-..|...
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~~~a 241 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKDVWA 241 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchhhhH
Confidence 556666666666555333333333
No 327
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=83.17 E-value=8.5 Score=34.99 Aligned_cols=117 Identities=14% Similarity=0.074 Sum_probs=71.3
Q ss_pred HHHHhCCChHHHHHHHHHHhhcC-----CCCChh------h--HHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHh
Q 007329 68 NELCLNGSLEQALKYLDSMQELN-----ICVDED------A--LVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGN 134 (608)
Q Consensus 68 ~~~~~~~~~~~A~~~~~~~~~~g-----~~~~~~------~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 134 (608)
..+.-..|+..|++..++-.+.= ...+.. + ...=|.+++..++|.++....-.--+..-+....+.-
T Consensus 43 d~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIle 122 (309)
T PF07163_consen 43 DLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILE 122 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHH
Confidence 33445667777777777654320 111111 1 1122568888888888766544443333333455556
Q ss_pred HHHHHhhhcCChhhHHHHHcccCC----CCcchHHHHHHHHH-----hcCChhHHHHHH
Q 007329 135 AFLSMFVKFGDLGHAWYVFGKMCD----RDLFSWNVLIGGYA-----KAGFFDEALSLY 184 (608)
Q Consensus 135 ~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~-----~~g~~~~a~~~~ 184 (608)
.-|-.|.+.|+...+.++-....+ .+...|.+++..|. -.|.+++|.++.
T Consensus 123 LCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 123 LCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 667778899998888887765522 34445777666554 469999998887
No 328
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=83.12 E-value=69 Score=34.13 Aligned_cols=52 Identities=15% Similarity=0.203 Sum_probs=32.1
Q ss_pred HHHHhHhcCCHHHHHHHHHhc-----CC---CHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHH
Q 007329 540 LLDMYVRCGRMKPAWNQFNSN-----ER---DVSAWN-----ILLTGYAERGQGALAEEFFRKMID 592 (608)
Q Consensus 540 l~~~~~~~g~~~~A~~~~~~~-----~~---~~~~~~-----~l~~~~~~~g~~~~A~~~~~~m~~ 592 (608)
+...+. .|+..+..+..... +. ....|. .+...+...|+.++|.+..++...
T Consensus 541 m~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 541 MGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 333344 67777766655444 22 344563 344457788999999988877653
No 329
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.02 E-value=30 Score=29.86 Aligned_cols=89 Identities=12% Similarity=0.063 Sum_probs=55.2
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhCCCCC--ccHHHHHHHHhHhcCCHHHHHHHHHhc-CCCHH--HHHHHHHHHHhcCCH
Q 007329 506 LSACARIGALMCGKEIHAHALRIGVAFD--GFLPNALLDMYVRCGRMKPAWNQFNSN-ERDVS--AWNILLTGYAERGQG 580 (608)
Q Consensus 506 l~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~--~~~~l~~~~~~~g~~ 580 (608)
...+...+++++|..-++......-.-+ ...--.|.......|.+|+|+..++.. .++-. ....-...+...|+.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k 175 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDK 175 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCch
Confidence 4455666777777766665553211100 111123556677788888888888887 44322 234455668888888
Q ss_pred HHHHHHHHHHHHcC
Q 007329 581 ALAEEFFRKMIDSK 594 (608)
Q Consensus 581 ~~A~~~~~~m~~~g 594 (608)
++|+.-|++.++.+
T Consensus 176 ~~Ar~ay~kAl~~~ 189 (207)
T COG2976 176 QEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHHcc
Confidence 88888888888764
No 330
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=82.90 E-value=13 Score=27.86 Aligned_cols=51 Identities=20% Similarity=0.199 Sum_probs=37.5
Q ss_pred HHhHhcCCHHHHHHHHHhc-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 007329 542 DMYVRCGRMKPAWNQFNSN-ERDVSAWNILLTGYAERGQGALAEEFFRKMIDSK 594 (608)
Q Consensus 542 ~~~~~~g~~~~A~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 594 (608)
..+...|+|++|..+.+.. -||...|-+|- -.+.|..+.+...+.+|...|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALc--e~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALC--EWRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHH--HHhhccHHHHHHHHHHHHhCC
Confidence 3466788888888888888 88888887774 446777777777777776553
No 331
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=82.84 E-value=8 Score=29.06 Aligned_cols=63 Identities=6% Similarity=0.101 Sum_probs=40.4
Q ss_pred ChHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHH
Q 007329 75 SLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLS 138 (608)
Q Consensus 75 ~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (608)
+.-+..+-++.+....+.|++....+.+++|.+.+++..|.++++-+...-.. ....|..++.
T Consensus 25 D~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~-~~~~Y~~~lq 87 (108)
T PF02284_consen 25 DGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGN-KKEIYPYILQ 87 (108)
T ss_dssp -HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT--TTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC-hHHHHHHHHH
Confidence 33456667777777788888888888888888888888888888876554322 2225555543
No 332
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=82.65 E-value=13 Score=31.94 Aligned_cols=91 Identities=13% Similarity=0.083 Sum_probs=66.5
Q ss_pred HHHhccCcHHHHHHHHHHHHHhCCCCCc----cHHHHHHHHhHhcCCHHHHHHHHHhc-CCCH---HHHHHHHHHHHhcC
Q 007329 507 SACARIGALMCGKEIHAHALRIGVAFDG----FLPNALLDMYVRCGRMKPAWNQFNSN-ERDV---SAWNILLTGYAERG 578 (608)
Q Consensus 507 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~---~~~~~l~~~~~~~g 578 (608)
.-+...|++++|..-|.++++.-+.... ..|..-..++.+.+.++.|++-..+. .-++ .....-..+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 3466789999999999999876554332 33444556788999999999988777 3333 23333345788899
Q ss_pred CHHHHHHHHHHHHHcCCCCCc
Q 007329 579 QGALAEEFFRKMIDSKGNWRK 599 (608)
Q Consensus 579 ~~~~A~~~~~~m~~~g~~p~~ 599 (608)
++++|++-|+++++. .|..
T Consensus 183 k~eealeDyKki~E~--dPs~ 201 (271)
T KOG4234|consen 183 KYEEALEDYKKILES--DPSR 201 (271)
T ss_pred hHHHHHHHHHHHHHh--Ccch
Confidence 999999999999886 5543
No 333
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=82.24 E-value=0.99 Score=35.63 Aligned_cols=36 Identities=19% Similarity=0.237 Sum_probs=31.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCchhhhhcccC
Q 007329 573 GYAERGQGALAEEFFRKMIDSKGNWRKLMGLFRKCQ 608 (608)
Q Consensus 573 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~~ac~ 608 (608)
.....|.-.+|-.+|++|++.|-.||+...|+.+|+
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPddW~~Ll~~a~ 139 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPDDWDALLKEAK 139 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCccHHHHHHHhc
Confidence 345567778899999999999999999999999885
No 334
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=82.16 E-value=3.1 Score=25.84 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=20.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC
Q 007329 569 ILLTGYAERGQGALAEEFFRKMIDSK 594 (608)
Q Consensus 569 ~l~~~~~~~g~~~~A~~~~~~m~~~g 594 (608)
.|..+|...|+.+.|.+++++.++.|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 46778888888888888888888643
No 335
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=82.09 E-value=51 Score=31.97 Aligned_cols=65 Identities=6% Similarity=-0.054 Sum_probs=41.6
Q ss_pred ChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 007329 363 DVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMP---DEITIASVLSACACLGNLDLGIKLHQLAMR 427 (608)
Q Consensus 363 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 427 (608)
...+|..+...+.+.|.++.|...+..+...+... ++.....-....-..|+...|...++...+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34567777777778888888888777777643211 233333445555666777777777776665
No 336
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=81.98 E-value=39 Score=30.56 Aligned_cols=182 Identities=14% Similarity=0.036 Sum_probs=91.5
Q ss_pred HHHcCCCchHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCH
Q 007329 373 CYEGSVLPDKAVETYQMMEAEGS--MPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCI 450 (608)
Q Consensus 373 ~~~~~~~~~~a~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 450 (608)
.-.+.|++++|.+.|+.+..... .-...+...++.++.+.++++.|....++.++.-......-|-..+.+++
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs----- 117 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS----- 117 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH-----
Confidence 34566777777777777776531 12345566666777777888888777777665433333333444444443
Q ss_pred HHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCC
Q 007329 451 DKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGV 530 (608)
Q Consensus 451 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 530 (608)
.|..+..++-. ..-..+|+.-|++.+...|.+..+- .|..-+..+...
T Consensus 118 -----~~~~i~~~~rD-----------q~~~~~A~~~f~~~i~ryPnS~Ya~--------------dA~~~i~~~~d~-- 165 (254)
T COG4105 118 -----YFFQIDDVTRD-----------QSAARAAFAAFKELVQRYPNSRYAP--------------DAKARIVKLNDA-- 165 (254)
T ss_pred -----HhccCCccccC-----------HHHHHHHHHHHHHHHHHCCCCcchh--------------hHHHHHHHHHHH--
Confidence 22222211100 0012234444444443333222111 111111111100
Q ss_pred CCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 531 AFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ER---DVSAWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 531 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
=...=..+.+-|.+.|.+-.|..-+++| +. -...+-.+..+|...|-.++|...-+-+...
T Consensus 166 --LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 166 --LAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred --HHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 0000123556677777777777777777 11 1334556667777788877777776666554
No 337
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=81.64 E-value=13 Score=27.74 Aligned_cols=59 Identities=12% Similarity=0.157 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 007329 382 KAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLI 441 (608)
Q Consensus 382 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 441 (608)
++.+-++.+....+.|++......+++|-+.+++..|.++++-+...- ..+...|..++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHH
Confidence 455566667777788899999999999999999999999988766322 12344555554
No 338
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=80.70 E-value=13 Score=27.97 Aligned_cols=60 Identities=12% Similarity=0.138 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 007329 382 KAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLID 442 (608)
Q Consensus 382 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 442 (608)
+..+-++.+....+.|++......+++|-+.+++..|.++++-+...- .....+|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 455566666777788999999999999999999999999998777432 222336666554
No 339
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=80.61 E-value=3.1 Score=22.21 Aligned_cols=18 Identities=17% Similarity=0.064 Sum_probs=8.0
Q ss_pred HHHHhHhcCCHHHHHHHH
Q 007329 540 LLDMYVRCGRMKPAWNQF 557 (608)
Q Consensus 540 l~~~~~~~g~~~~A~~~~ 557 (608)
+..++...|++++|..++
T Consensus 7 la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 7 LARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 344444444444444443
No 340
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=80.33 E-value=49 Score=30.57 Aligned_cols=58 Identities=9% Similarity=0.141 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHccCCCC---CHhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 007329 234 VVNALITMYVKCGDLVRARLVFDGMPKR---DRISWNAMISGYFENGEYMKGLMLFIMMRE 291 (608)
Q Consensus 234 ~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 291 (608)
+++.....|..+|.+.+|.++.+....- +...|-.++..++..|+--.+.+-++++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 4456677888999999999998887754 566788899999999998888888777753
No 341
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=80.04 E-value=2.8 Score=25.25 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=20.1
Q ss_pred cHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 535 FLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
.+++.|...|...|++++|..+++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHH
Confidence 35677888888889988888888775
No 342
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=79.85 E-value=6.2 Score=36.80 Aligned_cols=77 Identities=13% Similarity=0.088 Sum_probs=55.9
Q ss_pred HHHHHhCCCchHHHHHHHHhHhCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCH
Q 007329 472 ILGLRLNNRSFEALIFFRKMMLNLKP-NSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRM 550 (608)
Q Consensus 472 ~~~~~~~~~~~~A~~~~~~m~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 550 (608)
..-|.++|.+++|+.+|.+.. ...| |.+++..-..+|.+...+..|+.-...++..+ ...+.+|.|.|.-
T Consensus 104 GN~yFKQgKy~EAIDCYs~~i-a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--------~~Y~KAYSRR~~A 174 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAI-AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--------KLYVKAYSRRMQA 174 (536)
T ss_pred hhhhhhccchhHHHHHhhhhh-ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--------HHHHHHHHHHHHH
Confidence 356899999999999999888 4455 89999999999999999988887777665443 2355666655444
Q ss_pred HHHHHHH
Q 007329 551 KPAWNQF 557 (608)
Q Consensus 551 ~~A~~~~ 557 (608)
.+++...
T Consensus 175 R~~Lg~~ 181 (536)
T KOG4648|consen 175 RESLGNN 181 (536)
T ss_pred HHHHhhH
Confidence 4333333
No 343
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=79.31 E-value=44 Score=29.40 Aligned_cols=59 Identities=15% Similarity=0.080 Sum_probs=31.4
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHccCCCCCcc-cHHHH--HHHHHhCCCchHHHHHHHHhH
Q 007329 434 IIIANTLIDMYSKCKCIDKALEVFHQIPDKNVI-SWTSI--ILGLRLNNRSFEALIFFRKMM 492 (608)
Q Consensus 434 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~l--~~~~~~~~~~~~A~~~~~~m~ 492 (608)
+.+||-|.--+...|+++.|.+.|+...+-|+. -|..+ .-++.-.|++.-|.+-+...-
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fY 160 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFY 160 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHH
Confidence 455666666666667777777766666554331 12111 122334566666665555554
No 344
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=78.87 E-value=13 Score=32.24 Aligned_cols=78 Identities=14% Similarity=0.188 Sum_probs=51.4
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHh---CCCCchhHHHHHHHHHHhcCCH
Q 007329 172 AKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRF---GYEADVDVVNALITMYVKCGDL 248 (608)
Q Consensus 172 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~li~~~~~~g~~ 248 (608)
.+.|+ +.|++.|-.+...+ ..+....-..+..|-...+.+++++++-...+. +-.+|+..+.+|++.|.+.|+.
T Consensus 118 sr~~d-~~A~~~fL~~E~~~--~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTP--ELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hccCc-HHHHHHHHHHcCCC--CCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 34444 56777777777655 333344444444455567788888888777764 2366778888888888888888
Q ss_pred HHHH
Q 007329 249 VRAR 252 (608)
Q Consensus 249 ~~A~ 252 (608)
+.|-
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 7764
No 345
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=77.93 E-value=1e+02 Score=32.87 Aligned_cols=191 Identities=11% Similarity=-0.012 Sum_probs=113.1
Q ss_pred cchhHHhHHHHHhhhcCChhhHHHHHccc---CCCCcchHHHHHHHHH-hcCChhHHHHHHHHHHhcCCCCCCcc-----
Q 007329 128 LSVRLGNAFLSMFVKFGDLGHAWYVFGKM---CDRDLFSWNVLIGGYA-KAGFFDEALSLYQRMFWVGGVKPDVY----- 198 (608)
Q Consensus 128 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~~~~~p~~~----- 198 (608)
.+...|..||..-.++ -+.+++.. +..+..++-.+...+. ...+++.|...+++..... -+++..
T Consensus 28 ~~l~~Y~kLI~~ai~C-----L~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~-~~~~~~d~k~~ 101 (608)
T PF10345_consen 28 EQLKQYYKLIATAIKC-----LEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLC-ERHRLTDLKFR 101 (608)
T ss_pred hhHHHHHHHHHHHHHH-----HHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-cccchHHHHHH
Confidence 4566777787765443 11222222 1124456677777776 6789999999999876543 222222
Q ss_pred hHHHHHHHhcCCCChhhHHHHHHHHHHhC----CCCchhHHHHH-HHHHHhcCCHHHHHHHHccCCC-----CCH--hHH
Q 007329 199 TFPCVLRTCGGVPDLKRGKEVHVHVIRFG----YEADVDVVNAL-ITMYVKCGDLVRARLVFDGMPK-----RDR--ISW 266 (608)
Q Consensus 199 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g----~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~-----~~~--~~~ 266 (608)
.-..+++.+.+.+... |...+++.++.- ..+-...+.-+ +..+...++...|.+.++.+.. .|. ..+
T Consensus 102 ~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~ 180 (608)
T PF10345_consen 102 CQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVL 180 (608)
T ss_pred HHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHH
Confidence 1224456666666665 999888877642 22333444444 3334344799999998877643 232 333
Q ss_pred HHHHHHH--HhcCChhHHHHHHHHHHHCCC---------CCChhHHHHHHHHHh--hcCChhhHHHHHHHHH
Q 007329 267 NAMISGY--FENGEYMKGLMLFIMMREVLV---------DPDFMTLSSVISASE--LVGDEKLGREVHGYVI 325 (608)
Q Consensus 267 ~~li~~~--~~~~~~~~a~~~~~~m~~~~~---------~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~ 325 (608)
-.++.+. .+.+..+++.+.++++..... .|-..+|..++..++ ..|+++.+...++++.
T Consensus 181 ~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 181 ASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344433 345667888888888854322 234566777776654 5677777777776654
No 346
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=76.18 E-value=24 Score=30.69 Aligned_cols=72 Identities=14% Similarity=0.090 Sum_probs=38.8
Q ss_pred hHHHHHHHHhH-hCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHh---CCCCCccHHHHHHHHhHhcCCHHHHH
Q 007329 482 FEALIFFRKMM-LNLKPNSVTLVSILSACARIGALMCGKEIHAHALRI---GVAFDGFLPNALLDMYVRCGRMKPAW 554 (608)
Q Consensus 482 ~~A~~~~~~m~-~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~ 554 (608)
+.|.+.|-.+. .+.--++.....|...| ...+.+++.+++.++.+. +-.+|+..+.+|+..|.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 44555555555 22223333333333333 355666666666666533 22456666677777777777766653
No 347
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=75.66 E-value=43 Score=27.46 Aligned_cols=63 Identities=6% Similarity=-0.084 Sum_probs=32.2
Q ss_pred cCChHHHHHHHHHHHHhCCC-CchhHHHHHHHHhHhcCCHHHHHHHHccCCCCCc-ccHHHHHHHHH
Q 007329 412 LGNLDLGIKLHQLAMRTGLI-SYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNV-ISWTSIILGLR 476 (608)
Q Consensus 412 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~l~~~~~ 476 (608)
.++.+.+..+++.+.-.... +...++. ...+...|++++|.++|+++.+... ..|..-+.++|
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~C 87 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSSAGAPPYGKALLALC 87 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHH
Confidence 56666666666665543211 1222222 2335566777777777777665432 24444444433
No 348
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=75.04 E-value=4.7 Score=22.94 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=13.2
Q ss_pred HHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 537 PNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 537 ~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
|..+...|...|++++|.+.|++.
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a 27 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKA 27 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444555555556666655555544
No 349
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.68 E-value=1.2e+02 Score=31.93 Aligned_cols=148 Identities=13% Similarity=0.061 Sum_probs=73.5
Q ss_pred hhHHHHHHHHHHhcCCCCCCcchHHHHHHH-hcCCCChhhHHHHHHHHHH-------hCCCCchhHHHHHHHHHHhcC--
Q 007329 177 FDEALSLYQRMFWVGGVKPDVYTFPCVLRT-CGGVPDLKRGKEVHVHVIR-------FGYEADVDVVNALITMYVKCG-- 246 (608)
Q Consensus 177 ~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~-------~g~~~~~~~~~~li~~~~~~g-- 246 (608)
...|.++++...+.|.+.+-...=.....+ .....|.+.|..+++...+ .| .......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 457888888887766222222222222333 5567788888888888877 44 3334555666665543
Q ss_pred ---CHHHHHHHHccCCCC-CHhHHHHHHHHHHh---cCChhHHHHHHHHHHHCCCCCChhHHHHHHHHH--hhcCChhhH
Q 007329 247 ---DLVRARLVFDGMPKR-DRISWNAMISGYFE---NGEYMKGLMLFIMMREVLVDPDFMTLSSVISAS--ELVGDEKLG 317 (608)
Q Consensus 247 ---~~~~A~~~~~~~~~~-~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~--~~~~~~~~a 317 (608)
+.+.|..++...-.. ++..--.+...+.. ..+...|.++|...-+.|..+.. -+..++... ....+...|
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~-~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAI-YRLALCYELGLGVERNLELA 383 (552)
T ss_pred ccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHH-HHHHHHHHhCCCcCCCHHHH
Confidence 445566666544332 11111112222221 13455666666666665533211 111111111 123355556
Q ss_pred HHHHHHHHHhC
Q 007329 318 REVHGYVIKMG 328 (608)
Q Consensus 318 ~~~~~~~~~~~ 328 (608)
..++....+.|
T Consensus 384 ~~~~k~aA~~g 394 (552)
T KOG1550|consen 384 FAYYKKAAEKG 394 (552)
T ss_pred HHHHHHHHHcc
Confidence 66666655555
No 350
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=74.45 E-value=25 Score=32.12 Aligned_cols=86 Identities=15% Similarity=0.147 Sum_probs=45.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcC-CCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHh--
Q 007329 168 IGGYAKAGFFDEALSLYQRMFWVG-GVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVK-- 244 (608)
Q Consensus 168 i~~~~~~g~~~~a~~~~~~m~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-- 244 (608)
|.+++..|++.+++...-+..+.. .++| ......|-.|.+.++...+.++-.......-..+..-|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPp--kIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPP--KILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 456666666666665554443211 1222 23333344456666666666666655554333333445655555544
Q ss_pred ---cCCHHHHHHHH
Q 007329 245 ---CGDLVRARLVF 255 (608)
Q Consensus 245 ---~g~~~~A~~~~ 255 (608)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 37777777665
No 351
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=74.01 E-value=27 Score=26.58 Aligned_cols=77 Identities=14% Similarity=0.113 Sum_probs=42.6
Q ss_pred cHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007329 514 ALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN-ERDVSAWNILLTGYAERGQGALAEEFFRKMID 592 (608)
Q Consensus 514 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 592 (608)
..++|..+.+.+...+-. ...+-..-+..+.+.|+|++|...=... .||...|-+| +-.+.|-.+.+...+.++-.
T Consensus 21 cH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL--~a~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAAL--CAWKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHH--HHHHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHH--HHHhhccHHHHHHHHHHHHh
Confidence 456677766666654431 1122222334567788888883333333 7788877776 34577777777777777654
Q ss_pred c
Q 007329 593 S 593 (608)
Q Consensus 593 ~ 593 (608)
.
T Consensus 98 ~ 98 (116)
T PF09477_consen 98 S 98 (116)
T ss_dssp -
T ss_pred C
Confidence 3
No 352
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.85 E-value=1.5e+02 Score=32.73 Aligned_cols=59 Identities=14% Similarity=0.233 Sum_probs=36.3
Q ss_pred hHHHHHHHHhCCChHHHHHHHHHHhhcCCCCChhhHHHHHH------HhhccCCchhhhHHHHHHHH
Q 007329 63 PNSRLNELCLNGSLEQALKYLDSMQELNICVDEDALVNLVR------LCEWKRGYDEGLYLHSVVSK 123 (608)
Q Consensus 63 ~~~ll~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll~------~~~~~~~~~~a~~~~~~~~~ 123 (608)
+...+..+....++++|+.+-+.....+ |...-+...+. -+..++++++|...|..+..
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~~--p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~ 374 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDSPN--PKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEI 374 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCCCC--hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcc
Confidence 5666778888888998888877655422 22222222221 13457788888888877644
No 353
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=73.60 E-value=24 Score=30.94 Aligned_cols=60 Identities=8% Similarity=-0.041 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHH
Q 007329 164 WNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIR 225 (608)
Q Consensus 164 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 225 (608)
.+..++.+.+.+...+++...+.-.+.. +-|..+-..++..+|-.|++++|..-++..-.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak--Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~ 63 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK--PTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT 63 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC--CccccchhHHHHHHhhcchHHHHHHHHHHHhh
Confidence 3444555666666666666666655443 33444444555556666666666555554443
No 354
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.75 E-value=1.3e+02 Score=31.59 Aligned_cols=271 Identities=15% Similarity=0.051 Sum_probs=151.8
Q ss_pred hhhHHHHHHHHHHhCCCCCcccchHHH--HH-HHhcCChHHHHHHHhhCCC--------CChhhHHHHHHHHHcCC----
Q 007329 314 EKLGREVHGYVIKMGFSDDVSVCNPLI--KM-YLSFGNREEGEKVFSRMES--------KDVVSWTTMISCYEGSV---- 378 (608)
Q Consensus 314 ~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~-~~~~~~~~~a~~~~~~~~~--------~~~~~~~~li~~~~~~~---- 378 (608)
...+.++++...+.|.. .......++ .+ +....+.+.|..+|+...+ -+......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~ 306 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEK 306 (552)
T ss_pred hhHHHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCcc
Confidence 56788888888887722 222222222 22 3456788999998887744 23445666777777754
Q ss_pred -CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHh--HhcCCHHHHH
Q 007329 379 -LPDKAVETYQMMEAEGSMPDEITIASVLSACAC-LGNLDLGIKLHQLAMRTGLISYIIIANTLIDMY--SKCKCIDKAL 454 (608)
Q Consensus 379 -~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~ 454 (608)
+.+.|+.++.+..+.| .|+...+...+.-... ..+...|.++|....+.|..+ ...+.++.... ....+.+.|.
T Consensus 307 ~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~-A~~~la~~y~~G~gv~r~~~~A~ 384 (552)
T KOG1550|consen 307 IDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHIL-AIYRLALCYELGLGVERNLELAF 384 (552)
T ss_pred ccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChH-HHHHHHHHHHhCCCcCCCHHHHH
Confidence 4566899998888887 4565555444433333 346788999999888888432 22222222222 2345778888
Q ss_pred HHHccCCCCCc-ccHHHHH--HHHHhCCCchHHHHHHHHhH-hCCCC--CHHHHHHHHH-HHhc----cCcHHHHHHHHH
Q 007329 455 EVFHQIPDKNV-ISWTSII--LGLRLNNRSFEALIFFRKMM-LNLKP--NSVTLVSILS-ACAR----IGALMCGKEIHA 523 (608)
Q Consensus 455 ~~~~~~~~~~~-~~~~~l~--~~~~~~~~~~~A~~~~~~m~-~~~~p--~~~~~~~ll~-~~~~----~~~~~~a~~~~~ 523 (608)
.++.+.-+.+. .+...+. ..+.. ++++.+.-.+..+. .+..- ....+..... .... ..+...+...+.
T Consensus 385 ~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (552)
T KOG1550|consen 385 AYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYS 463 (552)
T ss_pred HHHHHHHHccChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHH
Confidence 88888776553 2122222 22222 66777666666665 22221 1111111111 1111 124556666666
Q ss_pred HHHHhCCCCCccHHHHHHHHhHhc----CCHHHHHHHHHhc--CCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHc
Q 007329 524 HALRIGVAFDGFLPNALLDMYVRC----GRMKPAWNQFNSN--ERDVSAWNILLTGYA----ERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 524 ~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~--~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~m~~~ 593 (608)
+....| +......|.+.|..- .+.+.|...+... +. ....-.+...+. ... ...|.+++++..+.
T Consensus 464 ~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~-~~~~~nlg~~~e~g~g~~~-~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 464 RAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG-AQALFNLGYMHEHGEGIKV-LHLAKRYYDQASEE 538 (552)
T ss_pred HHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh-hHHHhhhhhHHhcCcCcch-hHHHHHHHHHHHhc
Confidence 666555 455556666666543 3577888888777 33 333333332222 223 57788888888765
No 355
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=71.55 E-value=7.8 Score=20.88 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007329 566 AWNILLTGYAERGQGALAEEFFRKMID 592 (608)
Q Consensus 566 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 592 (608)
.|..+...+...|+++.|...+++.++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 466677777788888888888877765
No 356
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=71.42 E-value=37 Score=25.92 Aligned_cols=79 Identities=20% Similarity=0.156 Sum_probs=47.0
Q ss_pred CchhhhHHHHHHHHhcCCcchhHHhHHHHHhhhcCChhhHHHHHcccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007329 110 GYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFGDLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFW 189 (608)
Q Consensus 110 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 189 (608)
..++|..+.+++...+.. ...+--..+..+...|++++|...=.....||...|-+|-. .+.|-.+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 456777777777666642 22222333455667888888855545556678777766644 577877888888887765
Q ss_pred cC
Q 007329 190 VG 191 (608)
Q Consensus 190 ~~ 191 (608)
+|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 55
No 357
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=69.77 E-value=57 Score=26.75 Aligned_cols=77 Identities=9% Similarity=0.151 Sum_probs=46.8
Q ss_pred HhHHHHHhhhcCChhhHHHHHcccC---------CCCcchHHHHHHHHHhcCC-hhHHHHHHHHHHhcCCCCCCcchHHH
Q 007329 133 GNAFLSMFVKFGDLGHAWYVFGKMC---------DRDLFSWNVLIGGYAKAGF-FDEALSLYQRMFWVGGVKPDVYTFPC 202 (608)
Q Consensus 133 ~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~~~~ 202 (608)
.|.++.-....+.+...+.+++.+. ..+..+|++++.+..+..- ---+..+|..|++.+ .+++..-|..
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~-~~~t~~dy~~ 120 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKND-IEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcC-CCCCHHHHHH
Confidence 4555555555566666555555551 1345567777777755544 334566777777644 6777777777
Q ss_pred HHHHhcCC
Q 007329 203 VLRTCGGV 210 (608)
Q Consensus 203 ll~~~~~~ 210 (608)
+|.++.+.
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 77776554
No 358
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.40 E-value=91 Score=28.44 Aligned_cols=152 Identities=14% Similarity=0.198 Sum_probs=74.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC---CC--CCChhHHHHHHHHHhhcCChhhHHHHHHHHHHh-CCCCC----cccch
Q 007329 268 AMISGYFENGEYMKGLMLFIMMREV---LV--DPDFMTLSSVISASELVGDEKLGREVHGYVIKM-GFSDD----VSVCN 337 (608)
Q Consensus 268 ~li~~~~~~~~~~~a~~~~~~m~~~---~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~----~~~~~ 337 (608)
.+|..+.+.+++++..+.+.+|..- .+ .-+....+.++.....+.+.+...++++.-.+. .-..+ -.+-.
T Consensus 70 QmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNt 149 (440)
T KOG1464|consen 70 QMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNT 149 (440)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccc
Confidence 3444555555555555555444321 01 112344555555555555554444444332211 00111 12334
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCC--------C-------ChhhHHHHHHHHHcCCCchHHHHHHHHHHHC-CCCCCHHH
Q 007329 338 PLIKMYLSFGNREEGEKVFSRMES--------K-------DVVSWTTMISCYEGSVLPDKAVETYQMMEAE-GSMPDEIT 401 (608)
Q Consensus 338 ~l~~~~~~~~~~~~a~~~~~~~~~--------~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~t 401 (608)
.|...|...+++.+..++++++.. . -...|..-|..|....+-.+-..++++.... ...|.+..
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI 229 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI 229 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH
Confidence 566677777777777777766543 0 1134555566677776666666677665432 23444443
Q ss_pred HHHHHHHH-----HccCChHHHHH
Q 007329 402 IASVLSAC-----ACLGNLDLGIK 420 (608)
Q Consensus 402 ~~~ll~~~-----~~~~~~~~a~~ 420 (608)
.. +|+-| .+.|++++|..
T Consensus 230 mG-vIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 230 MG-VIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred Hh-HHHHcCCccccccchHHHHHh
Confidence 33 33333 34566666654
No 359
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=69.38 E-value=19 Score=36.45 Aligned_cols=122 Identities=20% Similarity=0.209 Sum_probs=84.2
Q ss_pred HHHHHHHHccCCCCCcccHHHH---HHHHHhCCCchHHHHHHHHhHhCCCC--CHHHHHHHHHHHhccCcHHHHHHHHHH
Q 007329 450 IDKALEVFHQIPDKNVISWTSI---ILGLRLNNRSFEALIFFRKMMLNLKP--NSVTLVSILSACARIGALMCGKEIHAH 524 (608)
Q Consensus 450 ~~~A~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~A~~~~~~m~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~ 524 (608)
-+-+-.++..|..++...|-+| .......|+...|...+.... ...| ..+....|.....+.|....|..++.+
T Consensus 589 ~e~~~~~~~~~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~-~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q 667 (886)
T KOG4507|consen 589 EEIGSFLFHAINKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRAL-NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQ 667 (886)
T ss_pred HHHHHHHHHHhcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHh-ccChhhhcccHHHHHHHHHHhhhhccHHHHHHH
Confidence 4456667777777665544433 223345788888998888887 2333 334556677777788888888888888
Q ss_pred HHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHH
Q 007329 525 ALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTG 573 (608)
Q Consensus 525 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~ 573 (608)
..... ...+.++-.++++|....++++|++.|+.+ ..+++.-+.|...
T Consensus 668 ~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 668 ALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 77766 336777778899999999999999999887 3345555554443
No 360
>PHA02875 ankyrin repeat protein; Provisional
Probab=69.22 E-value=1.1e+02 Score=30.49 Aligned_cols=79 Identities=18% Similarity=0.174 Sum_probs=39.7
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCCcch--HHHHHHHhcCCCChhhHHHHHHHHHHhCCCCchh--HHHHHHHHHHhc
Q 007329 170 GYAKAGFFDEALSLYQRMFWVGGVKPDVYT--FPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVD--VVNALITMYVKC 245 (608)
Q Consensus 170 ~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~ 245 (608)
..++.|+.+-+..+++ .| ..|+... ..+.+..++..|+.+ +.+.+.+.|..|+.. .....+...+..
T Consensus 8 ~A~~~g~~~iv~~Ll~----~g-~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~ 78 (413)
T PHA02875 8 DAILFGELDIARRLLD----IG-INPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEE 78 (413)
T ss_pred HHHHhCCHHHHHHHHH----CC-CCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHC
Confidence 3455666655444443 44 5555432 234445555566654 444455566554422 112234444566
Q ss_pred CCHHHHHHHHcc
Q 007329 246 GDLVRARLVFDG 257 (608)
Q Consensus 246 g~~~~A~~~~~~ 257 (608)
|+.+.+..+++.
T Consensus 79 g~~~~v~~Ll~~ 90 (413)
T PHA02875 79 GDVKAVEELLDL 90 (413)
T ss_pred CCHHHHHHHHHc
Confidence 777766666654
No 361
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=68.62 E-value=98 Score=28.51 Aligned_cols=159 Identities=13% Similarity=-0.038 Sum_probs=78.9
Q ss_pred CCcchHHHHHHHHhCCChHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccCCc-----hhhhHHHHHHHHhcCCcchhHH
Q 007329 59 ATKNPNSRLNELCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGY-----DEGLYLHSVVSKTMSHLSVRLG 133 (608)
Q Consensus 59 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~ 133 (608)
.....+.+++.+.++|...+|+.+.+.+... +.=..+...++........- ......+....+.--.. ..|
T Consensus 81 ~~l~L~~iL~~lL~~~~~~~a~~i~~~y~~l--~~F~~~LE~LLh~vL~~e~~~~~~~~~~~~~L~~v~~ll~~f--~~~ 156 (258)
T PF07064_consen 81 TQLFLHHILRHLLRRNLDEEALEIASKYRSL--PYFSHALELLLHTVLEEEADSSEDSPIPDALLPRVISLLQEF--PEY 156 (258)
T ss_pred ceechHHHHHHHHhcCCcHHHHHHHHHhccC--CCcHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHcC--cch
Confidence 3344788999999999999999999887652 22234444444422111110 11112222221111011 112
Q ss_pred hHHHHHhhhcCChhhHHHHHcccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC-----CcchHHHHHHHhc
Q 007329 134 NAFLSMFVKFGDLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKP-----DVYTFPCVLRTCG 208 (608)
Q Consensus 134 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-----~~~~~~~ll~~~~ 208 (608)
-.++..|+|.=+...-..+|+....| ..|+.-|.+.|+++.|-.++--+....+... +...-..++....
T Consensus 157 l~Ivv~C~RKtE~~~W~~LF~~lg~P-----~dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~ 231 (258)
T PF07064_consen 157 LEIVVNCARKTEVRYWPYLFDYLGSP-----RDLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMAL 231 (258)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhcCCH-----HHHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHH
Confidence 33333444444444444555554322 2566667777777777666665543332222 2223334445555
Q ss_pred CCCChhhHHHHHHHHHHh
Q 007329 209 GVPDLKRGKEVHVHVIRF 226 (608)
Q Consensus 209 ~~~~~~~a~~~~~~~~~~ 226 (608)
..++++-+.++.+-+...
T Consensus 232 ~~~~w~Lc~eL~RFL~~l 249 (258)
T PF07064_consen 232 ESGDWDLCFELVRFLKAL 249 (258)
T ss_pred hcccHHHHHHHHHHHHHh
Confidence 556666666555555443
No 362
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=68.61 E-value=1.4e+02 Score=31.56 Aligned_cols=75 Identities=11% Similarity=0.080 Sum_probs=25.5
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccC
Q 007329 384 VETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQI 460 (608)
Q Consensus 384 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 460 (608)
...++.+..+-.-.+......++..|.+.|-.+.+..+.+.+-..-.. ..-|..-+.-+.++|+...+..+-+.+
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~--~~~~g~AL~~~~ra~d~~~v~~i~~~l 464 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLLK--EGRYGEALSWFIRAGDYSLVTRIADRL 464 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHH---------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 333333333322334445555556666666666666655543332211 122344444555666655555544443
No 363
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=68.47 E-value=3e+02 Score=34.02 Aligned_cols=59 Identities=14% Similarity=-0.009 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCC
Q 007329 400 ITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIP 461 (608)
Q Consensus 400 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 461 (608)
.+|....+..-+.|+++.|...+-...+.+ .| ..+-.........|+...|+.++++..
T Consensus 1671 e~wLqsAriaR~aG~~q~A~nall~A~e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l 1729 (2382)
T KOG0890|consen 1671 ECWLQSARIARLAGHLQRAQNALLNAKESR-LP--EIVLERAKLLWQTGDELNALSVLQEIL 1729 (2382)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhhhcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 456666666666777777776655555444 22 333444555666777777777776544
No 364
>PHA02875 ankyrin repeat protein; Provisional
Probab=68.16 E-value=1e+02 Score=30.86 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=11.2
Q ss_pred HHHHHhCCChHHHHHHHHHHhhcCCCCC
Q 007329 67 LNELCLNGSLEQALKYLDSMQELNICVD 94 (608)
Q Consensus 67 l~~~~~~~~~~~A~~~~~~~~~~g~~~~ 94 (608)
+..-++.|+.+-+ +.+.+.|..|+
T Consensus 6 L~~A~~~g~~~iv----~~Ll~~g~~~n 29 (413)
T PHA02875 6 LCDAILFGELDIA----RRLLDIGINPN 29 (413)
T ss_pred HHHHHHhCCHHHH----HHHHHCCCCCC
Confidence 3344455655443 33334465554
No 365
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.10 E-value=1.5e+02 Score=30.48 Aligned_cols=52 Identities=19% Similarity=0.095 Sum_probs=28.2
Q ss_pred HhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhH-hcCCHHHHHHHHHhc
Q 007329 509 CARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYV-RCGRMKPAWNQFNSN 560 (608)
Q Consensus 509 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~ 560 (608)
..+.|-+..|.++.+.+.+..+.-|+.....+|+.|+ ++.++.=-+++++..
T Consensus 352 l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 352 LAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred HHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3445666666666666666555555555555666554 344455444444433
No 366
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=67.79 E-value=1.1e+02 Score=28.57 Aligned_cols=111 Identities=13% Similarity=0.052 Sum_probs=51.5
Q ss_pred CCHHHHHHHHccCCC-----CCHhHHHHHHHHHHhc-C-ChhHHHHHHHHHHH-CCCCCChhHHHHHHHHHhhcCChhhH
Q 007329 246 GDLVRARLVFDGMPK-----RDRISWNAMISGYFEN-G-EYMKGLMLFIMMRE-VLVDPDFMTLSSVISASELVGDEKLG 317 (608)
Q Consensus 246 g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~-~-~~~~a~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~~~~~~a 317 (608)
..+.+|+++|+.... .|...-..+++..... + ....-.++.+-+.. .|..++..+...++..++..+++.+.
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 345566666663222 2444455555544441 1 11112222222222 23445555555555555555555555
Q ss_pred HHHHHHHHHh-CCCCCcccchHHHHHHHhcCChHHHHHHH
Q 007329 318 REVHGYVIKM-GFSDDVSVCNPLIKMYLSFGNREEGEKVF 356 (608)
Q Consensus 318 ~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 356 (608)
.++++..... +...|...|..+|+...+.|+..-..++.
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 5555554433 33445555555555555555544444443
No 367
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=67.68 E-value=39 Score=33.44 Aligned_cols=128 Identities=9% Similarity=-0.016 Sum_probs=81.3
Q ss_pred HhcCCHHHHH-HHHccCCC--CCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 007329 445 SKCKCIDKAL-EVFHQIPD--KNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEI 521 (608)
Q Consensus 445 ~~~g~~~~A~-~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 521 (608)
...|++-.|- +++.-+.. .++.........+...|+++.+...+.....-+.....+...+++.....|++++|..+
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHH
Confidence 3456665554 34443331 22333223333456778888888887776644556677888888888889999999998
Q ss_pred HHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHH
Q 007329 522 HAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTG 573 (608)
Q Consensus 522 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~ 573 (608)
-+.|....++ |+.+...-...--..|-++++.-.|+++ +|...-|..++..
T Consensus 380 a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~ 434 (831)
T PRK15180 380 AEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSS 434 (831)
T ss_pred HHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeecc
Confidence 8888877666 4444333333334457788888888887 5555556555544
No 368
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=67.56 E-value=1.4e+02 Score=29.85 Aligned_cols=122 Identities=8% Similarity=0.035 Sum_probs=82.0
Q ss_pred HHHhcCCCChhhHHH-HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCC---CCHhHHHHHHHHHHhcCCh
Q 007329 204 LRTCGGVPDLKRGKE-VHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPK---RDRISWNAMISGYFENGEY 279 (608)
Q Consensus 204 l~~~~~~~~~~~a~~-~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~ 279 (608)
|.-....|++..|-+ ++..+....-.|+.....+. .+...|+++.+...+..... ....+...+++...+.|++
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~ 373 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARW 373 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhH
Confidence 333445677666544 45555554445554444333 35667999999988876654 3666788899999999999
Q ss_pred hHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhC
Q 007329 280 MKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMG 328 (608)
Q Consensus 280 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 328 (608)
++|..+-..|....+. +..............|-++++...|+++...+
T Consensus 374 ~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 374 REALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 9999999888876554 33333333344456678889998888887654
No 369
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=67.04 E-value=70 Score=26.25 Aligned_cols=80 Identities=11% Similarity=0.134 Sum_probs=53.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHccCCC---------CCHhHHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCChhHHHHH
Q 007329 235 VNALITMYVKCGDLVRARLVFDGMPK---------RDRISWNAMISGYFENGE-YMKGLMLFIMMREVLVDPDFMTLSSV 304 (608)
Q Consensus 235 ~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~l 304 (608)
.|.++.-....+++.....+++.+.. .+...|++++.+..+... ---+..+|.-|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 45555555555666666665555531 255578888888866655 34566778888887888888888888
Q ss_pred HHHHhhcCCh
Q 007329 305 ISASELVGDE 314 (608)
Q Consensus 305 l~~~~~~~~~ 314 (608)
+.++.+....
T Consensus 122 i~~~l~g~~~ 131 (145)
T PF13762_consen 122 IKAALRGYFH 131 (145)
T ss_pred HHHHHcCCCC
Confidence 8887665333
No 370
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=66.98 E-value=3.2e+02 Score=33.80 Aligned_cols=82 Identities=13% Similarity=0.013 Sum_probs=40.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHcc-CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhhcCC
Q 007329 236 NALITMYVKCGDLVRARLVFDG-MPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPD-FMTLSSVISASELVGD 313 (608)
Q Consensus 236 ~~li~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~ 313 (608)
-.+...|..-+++|....+... ...++ . ..-|-.....|++..|...|+.+.+. .|+ ..+++.++......|.
T Consensus 1424 fllq~lY~~i~dpDgV~Gv~~~r~a~~s--l-~~qil~~e~~g~~~da~~Cye~~~q~--~p~~~~~~~g~l~sml~~~~ 1498 (2382)
T KOG0890|consen 1424 FLLQNLYGSIHDPDGVEGVSARRFADPS--L-YQQILEHEASGNWADAAACYERLIQK--DPDKEKHHSGVLKSMLAIQH 1498 (2382)
T ss_pred HHHHHHHHhcCCcchhhhHHHHhhcCcc--H-HHHHHHHHhhccHHHHHHHHHHhhcC--CCccccchhhHHHhhhcccc
Confidence 3344456666665555554442 21111 1 12233344566666666666666654 233 4455555555555555
Q ss_pred hhhHHHHHH
Q 007329 314 EKLGREVHG 322 (608)
Q Consensus 314 ~~~a~~~~~ 322 (608)
++.+.-..+
T Consensus 1499 l~t~i~~~d 1507 (2382)
T KOG0890|consen 1499 LSTEILHLD 1507 (2382)
T ss_pred hhHHHhhhc
Confidence 555544333
No 371
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=65.39 E-value=39 Score=24.68 Aligned_cols=65 Identities=11% Similarity=0.069 Sum_probs=36.6
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCChhHHH
Q 007329 217 KEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGL 283 (608)
Q Consensus 217 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 283 (608)
.++++.+.+.|+- +......+-.+-...|+.+.|.+++..+. +.+..|..++.++-..|.-+-|.
T Consensus 22 ~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 22 RDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 3455555555532 22222222222224577777777777777 77777777777777766655443
No 372
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=65.34 E-value=1.3e+02 Score=28.83 Aligned_cols=116 Identities=11% Similarity=0.031 Sum_probs=61.9
Q ss_pred HHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHh---cCCHHHHHHHHHhc
Q 007329 484 ALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVR---CGRMKPAWNQFNSN 560 (608)
Q Consensus 484 A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~ 560 (608)
-+.++++.++..+.+......++..+.+..+.+...+-++.+....+. +...|...++.... .-.+++..++|.++
T Consensus 50 klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~ 128 (321)
T PF08424_consen 50 KLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVYEKC 128 (321)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 445555555333334445555555666555666666666666655433 44555555544332 12344444444433
Q ss_pred ---------CC-----C--------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCch
Q 007329 561 ---------ER-----D--------VSAWNILLTGYAERGQGALAEEFFRKMIDSKG-NWRKL 600 (608)
Q Consensus 561 ---------~~-----~--------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~ 600 (608)
.. + ...+..+...+...|..+.|..+++-+++-.+ .|+.+
T Consensus 129 l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~~~ 191 (321)
T PF08424_consen 129 LRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPESL 191 (321)
T ss_pred HHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCcccc
Confidence 00 0 11233344445678888888888888888765 56554
No 373
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=64.58 E-value=14 Score=23.01 Aligned_cols=25 Identities=24% Similarity=0.185 Sum_probs=17.2
Q ss_pred HHHHHHhCCChHHHHHHHHHHhhcC
Q 007329 66 RLNELCLNGSLEQALKYLDSMQELN 90 (608)
Q Consensus 66 ll~~~~~~~~~~~A~~~~~~~~~~g 90 (608)
+..+|...|+.+.|.++++++...|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4567777777777777777776543
No 374
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=64.28 E-value=88 Score=27.86 Aligned_cols=60 Identities=13% Similarity=-0.034 Sum_probs=27.2
Q ss_pred HHHHHHHHHhccCcHH-------HHHHHHHHHHHhCCCCC-----ccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 501 TLVSILSACARIGALM-------CGKEIHAHALRIGVAFD-----GFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 501 ~~~~ll~~~~~~~~~~-------~a~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
.+..+.+.|...|+-+ .|.+.|.+..+..-.|. ..+.-.++....+.|+.++|.+.|.++
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~v 191 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRV 191 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3444556666666543 34444444443322211 111222344445555555555555555
No 375
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=64.10 E-value=18 Score=24.50 Aligned_cols=27 Identities=15% Similarity=0.268 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007329 566 AWNILLTGYAERGQGALAEEFFRKMID 592 (608)
Q Consensus 566 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 592 (608)
-.-.+|.+|...|++++|.++.+++.+
T Consensus 25 NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 25 NHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333556666666666666666666543
No 376
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=64.01 E-value=27 Score=22.17 Aligned_cols=37 Identities=16% Similarity=0.237 Sum_probs=25.9
Q ss_pred HHHHHhCCChHHHHHHHHHHhhcCCCCChhhHHHHHH
Q 007329 67 LNELCLNGSLEQALKYLDSMQELNICVDEDALVNLVR 103 (608)
Q Consensus 67 l~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll~ 103 (608)
+....++|-..++..++++|.+.|+..+...|..+++
T Consensus 9 L~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 9 LLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 4445567777777777888877777777777766654
No 377
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=63.83 E-value=1.3e+02 Score=28.15 Aligned_cols=72 Identities=6% Similarity=0.002 Sum_probs=36.2
Q ss_pred CChhhHHHHHHH-HHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHcCCCchHHH
Q 007329 312 GDEKLGREVHGY-VIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVVSWTTMISCYEGSVLPDKAV 384 (608)
Q Consensus 312 ~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 384 (608)
..+++......+ |.+.+ -|+..+...+=++.....+|.+-.++..+-.-+...+|..|+.+++..|+.+-.+
T Consensus 269 ~p~~evi~~VKee~k~~n-lPe~eVi~ivWs~iMsaveWnKkeelva~qalrhlK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 269 DPVKEVILYVKEEMKRNN-LPETEVIGIVWSGIMSAVEWNKKEELVAEQALRHLKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred CCHHHHHHHHHHHHHhcC-CCCceEEeeeHhhhhHHHhhchHHHHHHHHHHHHHHhhhHHHHHHhcCChHHHHH
Confidence 344555444444 44444 5555443333333333333333222222222244567888999999998866543
No 378
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=63.56 E-value=49 Score=24.22 Aligned_cols=64 Identities=14% Similarity=0.045 Sum_probs=35.7
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHH
Q 007329 420 KLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEAL 485 (608)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 485 (608)
++++...+.|+ .+......+-.+-...|+.+.|.+++..+. ..+..|...+.++.+.|.-+-|.
T Consensus 23 ~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 23 DVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 44444454442 222222322222234577777777777777 66667777777777766654443
No 379
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=62.76 E-value=25 Score=22.95 Aligned_cols=29 Identities=14% Similarity=0.153 Sum_probs=16.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 570 LLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 570 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
+.-++.+.|++++|.+..+.+++. +|+..
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~ 35 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEI--EPDNR 35 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH--TTS-H
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh--CCCcH
Confidence 344566666666666666666663 56554
No 380
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=61.68 E-value=2.5e+02 Score=30.74 Aligned_cols=220 Identities=14% Similarity=0.042 Sum_probs=108.5
Q ss_pred HhcCCHHHHHHHHccCC----CCC-------HhHHHHHHH-HHHhcCChhHHHHHHHHHHHC----CCCCChhHHHHHHH
Q 007329 243 VKCGDLVRARLVFDGMP----KRD-------RISWNAMIS-GYFENGEYMKGLMLFIMMREV----LVDPDFMTLSSVIS 306 (608)
Q Consensus 243 ~~~g~~~~A~~~~~~~~----~~~-------~~~~~~li~-~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~~ll~ 306 (608)
....++++|..++.++. .++ ...|+.+-. .....|++++|.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 34577888877776543 221 113444432 334567888888887766543 12234455666667
Q ss_pred HHhhcCChhhHHHHHHHHHHhCCCCCcccchHH-----HHHHHhcCCh--HHHHHHHhhCCC-----C-----ChhhHHH
Q 007329 307 ASELVGDEKLGREVHGYVIKMGFSDDVSVCNPL-----IKMYLSFGNR--EEGEKVFSRMES-----K-----DVVSWTT 369 (608)
Q Consensus 307 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~~~~--~~a~~~~~~~~~-----~-----~~~~~~~ 369 (608)
+..-.|++++|..+..+..+..-.-+...+... ...+...|+. ++.+..|..... . -..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 777788888888888777655323333333222 1223444532 222333322221 1 1123333
Q ss_pred HHHHHHcC-CCchHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHccCChHHHHHHHHHHHHhCCCCc----hhHHHHHH-
Q 007329 370 MISCYEGS-VLPDKAVETYQMMEAEGSMPDEITI--ASVLSACACLGNLDLGIKLHQLAMRTGLISY----IIIANTLI- 441 (608)
Q Consensus 370 li~~~~~~-~~~~~a~~~~~~m~~~g~~p~~~t~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li- 441 (608)
+..++.+. +...++..-+.........|-...+ ..|+......|+.++|...++++......+. -......+
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 44444441 1111221122222222122222222 2566677788899998888887776433331 11111122
Q ss_pred -HHhHhcCCHHHHHHHHccCCC
Q 007329 442 -DMYSKCKCIDKALEVFHQIPD 462 (608)
Q Consensus 442 -~~~~~~g~~~~A~~~~~~~~~ 462 (608)
......|+.+.+...+.+-..
T Consensus 666 ~~lwl~qg~~~~a~~~l~~s~~ 687 (894)
T COG2909 666 LILWLAQGDKELAAEWLLKSGD 687 (894)
T ss_pred HHHhcccCCHHHHHHHHHhccC
Confidence 223346777777766665443
No 381
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=61.58 E-value=39 Score=26.65 Aligned_cols=50 Identities=8% Similarity=0.191 Sum_probs=40.3
Q ss_pred ChHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHh
Q 007329 75 SLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKT 124 (608)
Q Consensus 75 ~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 124 (608)
|--+..+.++.+....+.|++......+++|.+.+|+..|.++++.+...
T Consensus 64 D~wEvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 64 DGWEVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred hHHHHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 33455667777777888899999999999999999999999998886543
No 382
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=61.24 E-value=53 Score=28.02 Aligned_cols=48 Identities=21% Similarity=0.225 Sum_probs=25.7
Q ss_pred HHHHHHHHhc---CCC-HHHHHHHHHHHHhcCC-----------HHHHHHHHHHHHHcCCCCCch
Q 007329 551 KPAWNQFNSN---ERD-VSAWNILLTGYAERGQ-----------GALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 551 ~~A~~~~~~~---~~~-~~~~~~l~~~~~~~g~-----------~~~A~~~~~~m~~~g~~p~~~ 600 (608)
++|..-|+++ .|+ ..++..+..+|...+. +++|.+.|++..+. +|+.-
T Consensus 52 edAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne 114 (186)
T PF06552_consen 52 EDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNE 114 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-H
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcH
Confidence 3444444444 555 4566666666654432 55666677777664 77654
No 383
>PRK10941 hypothetical protein; Provisional
Probab=60.51 E-value=86 Score=29.09 Aligned_cols=56 Identities=9% Similarity=-0.005 Sum_probs=32.0
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHh
Q 007329 503 VSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNS 559 (608)
Q Consensus 503 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 559 (608)
+.+-.+|.+.++++.|+.+.+.+....+. |+.-+.--+-.|.+.|.+..|..-++.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~ 240 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSY 240 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 33444556666666666666666665544 444444455556666666666554443
No 384
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=59.85 E-value=1.5e+02 Score=27.61 Aligned_cols=69 Identities=9% Similarity=0.102 Sum_probs=43.6
Q ss_pred HHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH-----HhCCCCCccHH
Q 007329 469 TSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHAL-----RIGVAFDGFLP 537 (608)
Q Consensus 469 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-----~~~~~p~~~~~ 537 (608)
+.....|...|.+.+|.++-++.+.-.+.+...+-.++..+...|+--.+..-++++. +.|+..|..++
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 3445567777777778777777774444466667777777777777666665555443 44665554443
No 385
>PRK10941 hypothetical protein; Provisional
Probab=58.50 E-value=70 Score=29.64 Aligned_cols=61 Identities=11% Similarity=-0.055 Sum_probs=51.8
Q ss_pred HHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 538 NALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 538 ~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
+.|-.+|.+.++++.|..+.+.+ +.|+.-+.--.-.|.+.|.+..|..=++..++. .|++.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~--~P~dp 249 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ--CPEDP 249 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh--CCCch
Confidence 45777899999999999999998 556777888888899999999999999999876 66655
No 386
>PF13934 ELYS: Nuclear pore complex assembly
Probab=58.23 E-value=1.3e+02 Score=27.04 Aligned_cols=52 Identities=15% Similarity=0.158 Sum_probs=23.4
Q ss_pred HHHHHhhhcCChhhHHHHHcccCCC--CcchHHHHHHHHHhcCChhHHHHHHHHH
Q 007329 135 AFLSMFVKFGDLGHAWYVFGKMCDR--DLFSWNVLIGGYAKAGFFDEALSLYQRM 187 (608)
Q Consensus 135 ~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m 187 (608)
.++..+...|+.+.|..+++.+..+ +......++.. ..+|.+.+|+.+-+..
T Consensus 113 ~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~ 166 (226)
T PF13934_consen 113 KILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA-LANGLVTEAFSFQRSY 166 (226)
T ss_pred HHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-HHcCCHHHHHHHHHhC
Confidence 3455555555555565555554221 11122222222 4445555555544443
No 387
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=57.52 E-value=1.2e+02 Score=27.55 Aligned_cols=57 Identities=12% Similarity=-0.010 Sum_probs=34.7
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-cCChHHHHHHHHHHH
Q 007329 370 MISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACAC-LGNLDLGIKLHQLAM 426 (608)
Q Consensus 370 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~ 426 (608)
++..+-+.|+++++...++++...+...+..--+.|-.+|-. .|....+.+++..+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 455667788888888888888888766666655555555532 344445555555444
No 388
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=57.48 E-value=1.3e+02 Score=26.05 Aligned_cols=22 Identities=14% Similarity=-0.068 Sum_probs=11.9
Q ss_pred HHHHHHHHHcCCCchHHHHHHH
Q 007329 367 WTTMISCYEGSVLPDKAVETYQ 388 (608)
Q Consensus 367 ~~~li~~~~~~~~~~~a~~~~~ 388 (608)
.|.....+.+.|..|.|+.+++
T Consensus 184 vn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 184 VNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHcCCchHHHHHHh
Confidence 3444445555566666555554
No 389
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=57.08 E-value=55 Score=24.40 Aligned_cols=17 Identities=12% Similarity=0.034 Sum_probs=8.9
Q ss_pred hccCcHHHHHHHHHHHH
Q 007329 510 ARIGALMCGKEIHAHAL 526 (608)
Q Consensus 510 ~~~~~~~~a~~~~~~~~ 526 (608)
.+.|++.+|.+.+.+..
T Consensus 9 ~~~~dy~~A~d~L~~~f 25 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYF 25 (94)
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 34566666655444443
No 390
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=56.74 E-value=54 Score=25.34 Aligned_cols=27 Identities=22% Similarity=0.455 Sum_probs=21.3
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHHHH
Q 007329 366 SWTTMISCYEGSVLPDKAVETYQMMEA 392 (608)
Q Consensus 366 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 392 (608)
-|..++..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477777788888888888888887776
No 391
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=55.25 E-value=48 Score=32.81 Aligned_cols=42 Identities=12% Similarity=0.139 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch---hhhhccc
Q 007329 566 AWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL---MGLFRKC 607 (608)
Q Consensus 566 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~~ac 607 (608)
+...-+..+.+.+++.-|..+.+++++.+-.|+.. ..++.+|
T Consensus 302 aLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a~qArKil~~~ 346 (422)
T PF06957_consen 302 ALRSAMSQAFKLKNFITAASFARRLLELNPSPEVAEQARKILQAC 346 (422)
T ss_dssp HHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 45566666777788888888888887765444322 5555555
No 392
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.24 E-value=1.6e+02 Score=26.49 Aligned_cols=19 Identities=11% Similarity=0.097 Sum_probs=9.4
Q ss_pred ccCcHHHHHHHHHHHHHhC
Q 007329 511 RIGALMCGKEIHAHALRIG 529 (608)
Q Consensus 511 ~~~~~~~a~~~~~~~~~~~ 529 (608)
..+++.+|..+|+++....
T Consensus 166 ~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3445555555555554433
No 393
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=54.54 E-value=99 Score=23.90 Aligned_cols=27 Identities=19% Similarity=0.311 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 007329 265 SWNAMISGYFENGEYMKGLMLFIMMRE 291 (608)
Q Consensus 265 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 291 (608)
-|..|+..|...|..++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477777777788888888888877766
No 394
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=54.13 E-value=1.8e+02 Score=26.84 Aligned_cols=158 Identities=11% Similarity=0.031 Sum_probs=74.4
Q ss_pred hcCChHHHHHHHhhCCCCChhhHHHHHHHHHcCCCchHHHHH----HHHHHHCCCCCCHHHHHHHHHHHHccCChH-HHH
Q 007329 345 SFGNREEGEKVFSRMESKDVVSWTTMISCYEGSVLPDKAVET----YQMMEAEGSMPDEITIASVLSACACLGNLD-LGI 419 (608)
Q Consensus 345 ~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~-~a~ 419 (608)
+.+++++|.+++..- ...+.+.|+...|.++ ++-..+.+..+|......++..+...+.-+ .-.
T Consensus 2 ~~kky~eAidLL~~G-----------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG-----------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 345566666654331 2234445554444333 333334566666666566665555443221 233
Q ss_pred HHHHHHHH---hC--CCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHhC
Q 007329 420 KLHQLAMR---TG--LISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLN 494 (608)
Q Consensus 420 ~~~~~~~~---~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 494 (608)
.+.+.+++ .+ ..-++.....+...|.+.|++.+|+..|-...+++...+..++...... +
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~---------------~ 135 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTK---------------G 135 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHH---------------T
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHh---------------c
Confidence 33343333 22 1235677788899999999999999888655444333332222222222 3
Q ss_pred CCCCHHHHH-HHHHHHhccCcHHHHHHHHHHHHHh
Q 007329 495 LKPNSVTLV-SILSACARIGALMCGKEIHAHALRI 528 (608)
Q Consensus 495 ~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~ 528 (608)
.+.+...|. ..+--|.-.++...|...++...+.
T Consensus 136 ~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 136 YPSEADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp SS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 222222221 1222344567788888777666543
No 395
>PF13934 ELYS: Nuclear pore complex assembly
Probab=53.30 E-value=1.7e+02 Score=26.31 Aligned_cols=116 Identities=16% Similarity=0.080 Sum_probs=68.2
Q ss_pred cHHHHHHHHH--hCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCc-cHHHHHHHH
Q 007329 467 SWTSIILGLR--LNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDG-FLPNALLDM 543 (608)
Q Consensus 467 ~~~~l~~~~~--~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~ 543 (608)
.|...+.++. .++++++|++.+-.- .+.|+... -++.++...|+.+.|+.+++... +.+.. .....++..
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~~p--s~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~~---p~l~s~~~~~~~~~~ 150 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLSHP--SLIPWFPD--KILQALLRRGDPKLALRYLRAVG---PPLSSPEALTLYFVA 150 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhCCC--CCCcccHH--HHHHHHHHCCChhHHHHHHHhcC---CCCCCHHHHHHHHHH
Confidence 4555666654 456677777766433 23333222 36677777889998888888642 22221 222223333
Q ss_pred hHhcCCHHHHHHHHHhc-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 544 YVRCGRMKPAWNQFNSN-ER-DVSAWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 544 ~~~~g~~~~A~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
..+|.+.+|...-+.. .+ ....|..++..+..... + ...++++.+.
T Consensus 151 -La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~~--~-~~~~~~Ll~L 198 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEECA--R-SGRLDELLSL 198 (226)
T ss_pred -HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHhh--h-hhHHHHHHhC
Confidence 6678999999888777 22 24578888887775543 1 2235555554
No 396
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=53.20 E-value=57 Score=28.41 Aligned_cols=32 Identities=13% Similarity=0.139 Sum_probs=18.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007329 561 ERDVSAWNILLTGYAERGQGALAEEFFRKMID 592 (608)
Q Consensus 561 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 592 (608)
.|++..|..++.++...|+.++|.++.+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555555555555556666666555555554
No 397
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=53.20 E-value=1.9e+02 Score=26.74 Aligned_cols=142 Identities=20% Similarity=0.225 Sum_probs=63.1
Q ss_pred HHHhcCChhHHHHHHHHH----HHCCCCCChhHHHHHHHHHhhcCChh-hHHHHHHHHHHh---CC--CCCcccchHHHH
Q 007329 272 GYFENGEYMKGLMLFIMM----REVLVDPDFMTLSSVISASELVGDEK-LGREVHGYVIKM---GF--SDDVSVCNPLIK 341 (608)
Q Consensus 272 ~~~~~~~~~~a~~~~~~m----~~~~~~p~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~~---~~--~~~~~~~~~l~~ 341 (608)
.+.+.|+...|.++-.-| .+.+.+.|......++..+...+.-+ .-..+.+.+++. |- .-++.....+..
T Consensus 19 ~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~ 98 (260)
T PF04190_consen 19 ILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAE 98 (260)
T ss_dssp HHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHH
T ss_pred HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHH
Confidence 344555554444433332 33455556555555555444333211 233334444332 21 224566677888
Q ss_pred HHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 007329 342 MYLSFGNREEGEKVFSRMESKDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKL 421 (608)
Q Consensus 342 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 421 (608)
.|.+.|++.+|+.-|-.-..++...+..++......|...++ |... ...+--|...++...|...
T Consensus 99 ~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi-~RaVL~yL~l~n~~~A~~~ 163 (260)
T PF04190_consen 99 KLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFI-ARAVLQYLCLGNLRDANEL 163 (260)
T ss_dssp HHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHH-HHHHHHHHHTTBHHHHHHH
T ss_pred HHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHH-HHHHHHHHHhcCHHHHHHH
Confidence 888888888888766554443333332222222222221111 1112 2223335556778888777
Q ss_pred HHHHHHh
Q 007329 422 HQLAMRT 428 (608)
Q Consensus 422 ~~~~~~~ 428 (608)
++...+.
T Consensus 164 ~~~f~~~ 170 (260)
T PF04190_consen 164 FDTFTSK 170 (260)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7655543
No 398
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=53.06 E-value=21 Score=25.51 Aligned_cols=45 Identities=18% Similarity=0.145 Sum_probs=25.5
Q ss_pred hCCCchHHHHHHHHhHhCC--CCC-HHHHHHHHHHHhccCcHHHHHHH
Q 007329 477 LNNRSFEALIFFRKMMLNL--KPN-SVTLVSILSACARIGALMCGKEI 521 (608)
Q Consensus 477 ~~~~~~~A~~~~~~m~~~~--~p~-~~~~~~ll~~~~~~~~~~~a~~~ 521 (608)
..++.++|+..|+..++.. +++ ..++..++.+++..|++.+++.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777777666222 122 22455666666776766666554
No 399
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=52.70 E-value=70 Score=23.84 Aligned_cols=53 Identities=15% Similarity=0.127 Sum_probs=28.3
Q ss_pred HHhCCCchHHHHHHHHhH----hCCCCC-----HHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 007329 475 LRLNNRSFEALIFFRKMM----LNLKPN-----SVTLVSILSACARIGALMCGKEIHAHALR 527 (608)
Q Consensus 475 ~~~~~~~~~A~~~~~~m~----~~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 527 (608)
..+.|++.+|.+.+.+.. ....+. ......+.......|++++|.+.++++++
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345677777766666554 122222 12222334445556777777777666653
No 400
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=52.05 E-value=70 Score=27.35 Aligned_cols=48 Identities=17% Similarity=0.156 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHhhcCCCC--ChhhHH-----HHHHHhhccCCchhhhHHHHHHHH
Q 007329 76 LEQALKYLDSMQELNICV--DEDALV-----NLVRLCEWKRGYDEGLYLHSVVSK 123 (608)
Q Consensus 76 ~~~A~~~~~~~~~~g~~~--~~~~~~-----~ll~~~~~~~~~~~a~~~~~~~~~ 123 (608)
++.|+.+|+.+.+.-..| -..... ..+..|.+.|.+++|.+++++...
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 456777777765533222 111111 122345555555555555555544
No 401
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=51.97 E-value=1.7e+02 Score=25.92 Aligned_cols=157 Identities=13% Similarity=0.039 Sum_probs=79.0
Q ss_pred hhHHhHHHHHhhhcCChhhHHHHHcccCCCCcc-hHHHHHHH--HHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHH
Q 007329 130 VRLGNAFLSMFVKFGDLGHAWYVFGKMCDRDLF-SWNVLIGG--YAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRT 206 (608)
Q Consensus 130 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~--~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~ 206 (608)
+.++|-+.-.+...|+++.|.+.|+...+-|+. -|..+=++ +.-.|++.-|.+-|...-+..+-.|=...|-.++.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E- 177 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE- 177 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH-
Confidence 456777777777888888888888888664432 23333222 23467888887777766655422232223332222
Q ss_pred hcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHH-HHHhcCCHHHHHHHHccCCCC-------CHhHHHHHHHHHHhcCC
Q 007329 207 CGGVPDLKRGKEVHVHVIRFGYEADVDVVNALIT-MYVKCGDLVRARLVFDGMPKR-------DRISWNAMISGYFENGE 278 (608)
Q Consensus 207 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~~~ 278 (608)
..-++.+|..-+.+-.+ ..|..-|...|- .|...=..+.+.+-...-... =..+|--+.+.+...|+
T Consensus 178 --~k~dP~~A~tnL~qR~~---~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~ 252 (297)
T COG4785 178 --QKLDPKQAKTNLKQRAE---KSDKEQWGWNIVEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGD 252 (297)
T ss_pred --hhCCHHHHHHHHHHHHH---hccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcccc
Confidence 22344444433322111 223333332222 222211222222211111111 23466667777777777
Q ss_pred hhHHHHHHHHHHHC
Q 007329 279 YMKGLMLFIMMREV 292 (608)
Q Consensus 279 ~~~a~~~~~~m~~~ 292 (608)
.++|..+|+-....
T Consensus 253 ~~~A~~LfKLaian 266 (297)
T COG4785 253 LDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777765543
No 402
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=51.69 E-value=1.1e+02 Score=24.33 Aligned_cols=45 Identities=11% Similarity=0.208 Sum_probs=36.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 007329 383 AVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMR 427 (608)
Q Consensus 383 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 427 (608)
..+-++.+..-.+.|++.....-+++|-+.+++..|.++|+-+..
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344455666667889999999999999999999999999987664
No 403
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=51.39 E-value=4.1e+02 Score=30.08 Aligned_cols=256 Identities=7% Similarity=-0.083 Sum_probs=144.6
Q ss_pred HHHHHccCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCC
Q 007329 251 ARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFS 330 (608)
Q Consensus 251 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 330 (608)
...+.+.+.++|+..-...+..+.+.+..+ +...+....+ .++...-...+.++...+........+..+.+.
T Consensus 623 ~~~L~~~L~D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~--- 695 (897)
T PRK13800 623 VAELAPYLADPDPGVRRTAVAVLTETTPPG-FGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS--- 695 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhhcchh-HHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---
Confidence 345556666778888777788877777543 4444445543 234444445555554443222222233333332
Q ss_pred CCcccchHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007329 331 DDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACA 410 (608)
Q Consensus 331 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 410 (608)
+|..+-...+..+...+.- ....+...+..+|...-...+.++.+.+..+. +..... .++...-.....++.
T Consensus 696 ~d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~ 767 (897)
T PRK13800 696 PDPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLA 767 (897)
T ss_pred CCHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHH
Confidence 4555555566666554321 12345556666777666666777766654332 222222 456666666677777
Q ss_pred ccCChHH-HHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHH-HHHccCCCCCcccHHHHHHHHHhCCCchHHHHHH
Q 007329 411 CLGNLDL-GIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKAL-EVFHQIPDKNVISWTSIILGLRLNNRSFEALIFF 488 (608)
Q Consensus 411 ~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 488 (608)
..+..+. +...+..+.+ .++..+-...+.++.+.|..+.+. .+...+.+++...-...+.++...+. .++...+
T Consensus 768 ~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L 843 (897)
T PRK13800 768 TLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPAL 843 (897)
T ss_pred HhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHH
Confidence 6665433 2333333332 456777778888888888765543 34444556666555666777777665 4566666
Q ss_pred HHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 007329 489 RKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALR 527 (608)
Q Consensus 489 ~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 527 (608)
..++ -.|+...-...+.++.+.+....+...+..+.+
T Consensus 844 ~~~L--~D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 844 VEAL--TDPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHh--cCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 6665 355666667777777775434456666665554
No 404
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=50.77 E-value=1.9e+02 Score=26.11 Aligned_cols=116 Identities=15% Similarity=0.012 Sum_probs=75.9
Q ss_pred hHhcCCHHHHHHHHccCC--CCCc-ccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHH-HHHHHHHHhccCcHHHHH
Q 007329 444 YSKCKCIDKALEVFHQIP--DKNV-ISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVT-LVSILSACARIGALMCGK 519 (608)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~--~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~-~~~ll~~~~~~~~~~~a~ 519 (608)
|....+++.|...+.+.. .|++ .-|+.-+.++.+.++++.+.+--++.+ .+.||.+- ...+..+......+++|.
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrral-ql~~N~vk~h~flg~~~l~s~~~~eaI 98 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRAL-QLDPNLVKAHYFLGQWLLQSKGYDEAI 98 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHH-hcChHHHHHHHHHHHHHHhhccccHHH
Confidence 555677888888777655 4655 446667888888999988887777776 55666553 444555667778899999
Q ss_pred HHHHHHHH----hCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 520 EIHAHALR----IGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 520 ~~~~~~~~----~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
..+.++.+ ..+.+...+...|.++--+.=...+...+.++.
T Consensus 99 ~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 99 KVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 98888753 334444555555555544444444555555554
No 405
>PLN03025 replication factor C subunit; Provisional
Probab=50.67 E-value=1.2e+02 Score=28.95 Aligned_cols=97 Identities=13% Similarity=0.035 Sum_probs=48.0
Q ss_pred hHHHHHHHHhH--hCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHh
Q 007329 482 FEALIFFRKMM--LNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNS 559 (608)
Q Consensus 482 ~~A~~~~~~m~--~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 559 (608)
++....+++.. +|+.-+......++..+ .|+...+...++.... +. +.++. ..+.+-
T Consensus 161 ~~l~~~L~~i~~~egi~i~~~~l~~i~~~~--~gDlR~aln~Lq~~~~-~~-----------------~~i~~-~~v~~~ 219 (319)
T PLN03025 161 QEILGRLMKVVEAEKVPYVPEGLEAIIFTA--DGDMRQALNNLQATHS-GF-----------------GFVNQ-ENVFKV 219 (319)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHh-cC-----------------CCCCH-HHHHHH
Confidence 44444555544 56666666666665543 4677777766663221 10 00000 000110
Q ss_pred c-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 560 N-ERDVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 560 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
. .+.......++.+.. .++.+.|...+.+|...|..|..+
T Consensus 220 ~~~~~~~~i~~~i~~~~-~~~~~~a~~~l~~ll~~g~~~~~I 260 (319)
T PLN03025 220 CDQPHPLHVKNIVRNCL-KGKFDDACDGLKQLYDLGYSPTDI 260 (319)
T ss_pred cCCCCHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCHHHH
Confidence 1 222333334444433 456777777777777777777666
No 406
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=50.48 E-value=30 Score=32.19 Aligned_cols=37 Identities=22% Similarity=0.387 Sum_probs=31.1
Q ss_pred hHHHHHHHHhCCChHHHHHHHHHHhhcCCCCChhhHH
Q 007329 63 PNSRLNELCLNGSLEQALKYLDSMQELNICVDEDALV 99 (608)
Q Consensus 63 ~~~ll~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~ 99 (608)
|+..|..-.+.||+++|+.++++..+.|+.--..+|-
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 8899999999999999999999999998765444443
No 407
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=49.98 E-value=2.2e+02 Score=26.47 Aligned_cols=118 Identities=8% Similarity=0.040 Sum_probs=60.7
Q ss_pred HHHHhCCCchHHHHHHHHhH-hCCCCCHH-------HHHHHHHHHhccCcHHHHHHHHHHHHHh----CCCCCccHHHHH
Q 007329 473 LGLRLNNRSFEALIFFRKMM-LNLKPNSV-------TLVSILSACARIGALMCGKEIHAHALRI----GVAFDGFLPNAL 540 (608)
Q Consensus 473 ~~~~~~~~~~~A~~~~~~m~-~~~~p~~~-------~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~p~~~~~~~l 540 (608)
....+.+++++|+..+.+++ .|...+.. +...+...|...|++..-.+.....++. .-.-...+..+|
T Consensus 11 ~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtL 90 (421)
T COG5159 11 NNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTL 90 (421)
T ss_pred HHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHH
Confidence 34455666677777777766 55444432 3445556666666665554444333221 111123344555
Q ss_pred HHHhHhc-CCHHHHHHHHHhc----CCC-HH-----HHHHHHHHHHhcCCHHHHHHHHHHH
Q 007329 541 LDMYVRC-GRMKPAWNQFNSN----ERD-VS-----AWNILLTGYAERGQGALAEEFFRKM 590 (608)
Q Consensus 541 ~~~~~~~-g~~~~A~~~~~~~----~~~-~~-----~~~~l~~~~~~~g~~~~A~~~~~~m 590 (608)
++.+--. ..++.-..+.... ... .. .=.-++..+.+.|++.+|+.+...+
T Consensus 91 iekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 91 IEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred HHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 5555432 3355555555443 111 11 1224677778888888887655443
No 408
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=49.41 E-value=1.9e+02 Score=25.78 Aligned_cols=20 Identities=10% Similarity=0.022 Sum_probs=9.6
Q ss_pred HHHHhccCcHHHHHHHHHHH
Q 007329 506 LSACARIGALMCGKEIHAHA 525 (608)
Q Consensus 506 l~~~~~~~~~~~a~~~~~~~ 525 (608)
+......|+.+.|.+....+
T Consensus 71 Ir~~I~~G~Ie~Aie~in~l 90 (228)
T KOG2659|consen 71 IRRAIEEGQIEEAIEKVNQL 90 (228)
T ss_pred HHHHHHhccHHHHHHHHHHh
Confidence 33444455555555544443
No 409
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=49.36 E-value=26 Score=33.09 Aligned_cols=86 Identities=15% Similarity=0.011 Sum_probs=50.5
Q ss_pred hcCCHHHHHHHHccCCCCCc---ccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCH-HHHHHHHHHHhccCcHHHHHHH
Q 007329 446 KCKCIDKALEVFHQIPDKNV---ISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNS-VTLVSILSACARIGALMCGKEI 521 (608)
Q Consensus 446 ~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~ 521 (608)
..|.++.|++.|....+.++ ..|.--..++.+.++...|++-+.... .+.||. .-|-.--.+....|++++|...
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~-ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAI-EINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhh-ccCcccccccchhhHHHHHhhchHHHHHH
Confidence 45677777777776664332 344444556667777777776666665 344433 2344444445556677777766
Q ss_pred HHHHHHhCCCC
Q 007329 522 HAHALRIGVAF 532 (608)
Q Consensus 522 ~~~~~~~~~~p 532 (608)
++.+.+.++.+
T Consensus 205 l~~a~kld~dE 215 (377)
T KOG1308|consen 205 LALACKLDYDE 215 (377)
T ss_pred HHHHHhccccH
Confidence 66666655543
No 410
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=49.31 E-value=66 Score=20.37 Aligned_cols=33 Identities=6% Similarity=-0.050 Sum_probs=21.6
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCChhHHHHHHH
Q 007329 274 FENGEYMKGLMLFIMMREVLVDPDFMTLSSVIS 306 (608)
Q Consensus 274 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 306 (608)
.+.|-..++..++++|.+.|+..+...|..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 455666677777777777777666666665554
No 411
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=48.95 E-value=43 Score=23.98 Aligned_cols=41 Identities=15% Similarity=0.154 Sum_probs=21.5
Q ss_pred hcCCHHHHHHHHHhc---CCC----HHHHHHHHHHHHhcCCHHHHHHH
Q 007329 546 RCGRMKPAWNQFNSN---ERD----VSAWNILLTGYAERGQGALAEEF 586 (608)
Q Consensus 546 ~~g~~~~A~~~~~~~---~~~----~~~~~~l~~~~~~~g~~~~A~~~ 586 (608)
...+.++|+..|+++ .++ ..++..|+.+|...|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555554 111 22455556666666666665544
No 412
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=48.73 E-value=51 Score=28.75 Aligned_cols=54 Identities=7% Similarity=-0.068 Sum_probs=29.9
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHh
Q 007329 173 KAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRF 226 (608)
Q Consensus 173 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 226 (608)
..++.+......+.+.+.-...|+...|..++.++...|+.++|.++.+++...
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 334443333333333332224567777777777777777777776666666554
No 413
>PRK13342 recombination factor protein RarA; Reviewed
Probab=48.63 E-value=2.9e+02 Score=27.65 Aligned_cols=100 Identities=17% Similarity=0.140 Sum_probs=52.7
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccC---CCCCcccHHHHH
Q 007329 396 MPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQI---PDKNVISWTSII 472 (608)
Q Consensus 396 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~l~ 472 (608)
..+......++..+ .|+...+..+++.+...+...+.. ...+++... .+.+...+..++
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~~----------------~v~~~~~~~~~~~d~~~~~~~~~i 234 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAALGVDSITLE----------------LLEEALQKRAARYDKDGDEHYDLI 234 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCHH----------------HHHHHHhhhhhccCCCccHHHHHH
Confidence 44555555555443 688888888777665432122222 122222211 112222334444
Q ss_pred HHHHh---CCCchHHHHHHHHhH-hCCCCCHHHHHHHHHHHhccC
Q 007329 473 LGLRL---NNRSFEALIFFRKMM-LNLKPNSVTLVSILSACARIG 513 (608)
Q Consensus 473 ~~~~~---~~~~~~A~~~~~~m~-~~~~p~~~~~~~ll~~~~~~~ 513 (608)
.++.+ .++.+.|+..+.+|. .|..|....-..+..++...|
T Consensus 235 sa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 235 SALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 44444 477888888888888 666776655555555544443
No 414
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=48.21 E-value=1.4e+02 Score=28.46 Aligned_cols=77 Identities=10% Similarity=-0.131 Sum_probs=42.8
Q ss_pred chHHHHHHHHhHhC--C---CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHH
Q 007329 481 SFEALIFFRKMMLN--L---KPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWN 555 (608)
Q Consensus 481 ~~~A~~~~~~m~~~--~---~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 555 (608)
.++|.+.|+....+ - ..++.....++....+.|+.+.-..+++...... +...-..++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~---~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNST---SPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTS---THHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccC---CHHHHHHHHHhhhccCCHHHHHH
Confidence 45567777776633 1 3355556666666677776665555555544322 44555667777777777766666
Q ss_pred HHHhc
Q 007329 556 QFNSN 560 (608)
Q Consensus 556 ~~~~~ 560 (608)
+++.+
T Consensus 223 ~l~~~ 227 (324)
T PF11838_consen 223 LLDLL 227 (324)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66665
No 415
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=48.00 E-value=81 Score=31.16 Aligned_cols=91 Identities=13% Similarity=0.048 Sum_probs=55.2
Q ss_pred HHHHHHHhCCCchHHHHHHHHhH------hCCCCC-------HHHHHHHHHHHhccCcHHHHHHHHHHHH--HhC-----
Q 007329 470 SIILGLRLNNRSFEALIFFRKMM------LNLKPN-------SVTLVSILSACARIGALMCGKEIHAHAL--RIG----- 529 (608)
Q Consensus 470 ~l~~~~~~~~~~~~A~~~~~~m~------~~~~p~-------~~~~~~ll~~~~~~~~~~~a~~~~~~~~--~~~----- 529 (608)
.++.++....+..+-++..+... .+.... -.+...|++.++-.||+..|+++++.+. +.+
T Consensus 80 nvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V 159 (404)
T PF10255_consen 80 NVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKV 159 (404)
T ss_pred HHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccC
Confidence 34566677776666666555522 011111 1234566777888888888888877543 111
Q ss_pred CCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 530 VAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 530 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
+.-...++-.++-+|...+++.+|.+.|..+
T Consensus 160 ~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 160 PACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred cchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1113445556777788888888888888775
No 416
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=47.87 E-value=1.9e+02 Score=29.88 Aligned_cols=148 Identities=15% Similarity=0.046 Sum_probs=82.9
Q ss_pred CCChhHHHHHHHHHhhcC--ChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCC----CChhhHH
Q 007329 295 DPDFMTLSSVISASELVG--DEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMES----KDVVSWT 368 (608)
Q Consensus 295 ~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~ 368 (608)
-|+..+..+++.-....- ..+-+-.++.. .+....|-..+.|...-.+.-.|+...|.+.+..... ...+...
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~-~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v 646 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHA-INKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLV 646 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHH-hcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHH
Confidence 355555555444332211 22223333333 3333344444444433334446777778777766532 1223344
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhH
Q 007329 369 TMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYS 445 (608)
Q Consensus 369 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 445 (608)
.|.....+.|..-+|..++.+..... ...+.++..+.+++....+++.|++-|+...+.. +.+.++-+.|...-|
T Consensus 647 ~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~-~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 647 NLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLT-TKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC-CCChhhHHHHHHHHH
Confidence 45555666667777777777766654 3456677777888888888888888888777655 334555555554433
No 417
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=47.55 E-value=2.3e+02 Score=26.69 Aligned_cols=42 Identities=10% Similarity=0.011 Sum_probs=22.7
Q ss_pred HHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHH
Q 007329 284 MLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVI 325 (608)
Q Consensus 284 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 325 (608)
++++.|...++.|.-..|.-+.-.+.+.=.+..+..+|+.+.
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 445555555555555555555555555555555555555544
No 418
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=47.23 E-value=30 Score=21.92 Aligned_cols=35 Identities=9% Similarity=0.113 Sum_probs=28.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCchhhhhc
Q 007329 571 LTGYAERGQGALAEEFFRKMIDSKGNWRKLMGLFR 605 (608)
Q Consensus 571 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~~ 605 (608)
++-+...|--.++..+.=++.+.|+.|+....+++
T Consensus 11 iS~lLntgLd~etL~ici~L~e~GVnPeaLA~vI~ 45 (48)
T PF12554_consen 11 ISDLLNTGLDRETLSICIELCENGVNPEALAAVIK 45 (48)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 34566778888999999999999999998865543
No 419
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=47.09 E-value=2.5e+02 Score=30.27 Aligned_cols=99 Identities=15% Similarity=0.128 Sum_probs=51.0
Q ss_pred hHHHHHHHHhH--hCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHh
Q 007329 482 FEALIFFRKMM--LNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNS 559 (608)
Q Consensus 482 ~~A~~~~~~m~--~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 559 (608)
++....+.... +++..+......++... .|++..++.+++++...|- ...+...+-..+ .
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~--g~It~e~V~~lL-------------G- 242 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGS--GKVAENDVRQMI-------------G- 242 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcC--CCcCHHHHHHHH-------------c-
Confidence 33444454444 46666666666666554 4788888888877665431 111111111111 0
Q ss_pred cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 560 NERDVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 560 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
..+......|+.++.. |+...++.+++++.+.|+.+..+
T Consensus 243 -~~d~~~If~LldAL~~-~d~~~al~~l~~L~~~G~d~~~~ 281 (709)
T PRK08691 243 -AVDKQYLYELLTGIIN-QDGAALLAKAQEMAACAVGFDNA 281 (709)
T ss_pred -ccCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCHHHH
Confidence 1122233444444433 56666666666666666666555
No 420
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=46.89 E-value=1e+02 Score=25.32 Aligned_cols=63 Identities=11% Similarity=0.068 Sum_probs=39.7
Q ss_pred HHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhhcCC
Q 007329 82 YLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFGD 145 (608)
Q Consensus 82 ~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 145 (608)
+.+.+.+.|.++...- ..++..+...++.-.|..+++.+.+.++..+..|--.-++.+...|-
T Consensus 8 ~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 8 AIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 3345556676654332 35667777777778888888888888777665554444555555553
No 421
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=46.68 E-value=2.7e+02 Score=28.85 Aligned_cols=33 Identities=15% Similarity=0.013 Sum_probs=18.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 567 WNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 567 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
...++.++ ..++.+.|..+++++...|..|..+
T Consensus 245 if~Li~al-~~~d~~~Al~~l~~Ll~~G~~~~~I 277 (504)
T PRK14963 245 LRGIAAAL-AQGDAAEALSGAAQLYRDGFAARTL 277 (504)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCHHHH
Confidence 33444444 3356666666666666666665555
No 422
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=46.36 E-value=3e+02 Score=27.16 Aligned_cols=59 Identities=17% Similarity=0.088 Sum_probs=41.1
Q ss_pred HHHHHHHhCCChHHHHHHHHHHhhcCCCCChh--hHHHHHHHhh--ccCCchhhhHHHHHHHHh
Q 007329 65 SRLNELCLNGSLEQALKYLDSMQELNICVDED--ALVNLVRLCE--WKRGYDEGLYLHSVVSKT 124 (608)
Q Consensus 65 ~ll~~~~~~~~~~~A~~~~~~~~~~g~~~~~~--~~~~ll~~~~--~~~~~~~a~~~~~~~~~~ 124 (608)
..+..+...+++..|.++|+.+.+. +.++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 136 ~~a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 136 RRAKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455667899999999999999876 545444 3444444443 467888888888876665
No 423
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=46.36 E-value=3e+02 Score=27.16 Aligned_cols=53 Identities=9% Similarity=-0.075 Sum_probs=26.9
Q ss_pred HHhCCCchHHHHHHHHhHhCCCCCHH--HHHHHHHHHh--ccCcHHHHHHHHHHHHH
Q 007329 475 LRLNNRSFEALIFFRKMMLNLKPNSV--TLVSILSACA--RIGALMCGKEIHAHALR 527 (608)
Q Consensus 475 ~~~~~~~~~A~~~~~~m~~~~~p~~~--~~~~ll~~~~--~~~~~~~a~~~~~~~~~ 527 (608)
+...+++..|.++|+.+...++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33556666666666666622444333 2333333332 34456666666665544
No 424
>PRK13342 recombination factor protein RarA; Reviewed
Probab=45.85 E-value=3.3e+02 Score=27.35 Aligned_cols=101 Identities=21% Similarity=0.113 Sum_probs=55.5
Q ss_pred CCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCC---CCChhhHHHHH
Q 007329 295 DPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRME---SKDVVSWTTMI 371 (608)
Q Consensus 295 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li 371 (608)
..+......++..+ .|+...+..+++.+...+.. . ..+....++.... ..+...+..++
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~---I-------------t~~~v~~~~~~~~~~~d~~~~~~~~~i 234 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAALGVDS---I-------------TLELLEEALQKRAARYDKDGDEHYDLI 234 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCC---C-------------CHHHHHHHHhhhhhccCCCccHHHHHH
Confidence 44555555554433 67888888887776543111 1 1222222222211 12222233444
Q ss_pred HHHHc---CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 007329 372 SCYEG---SVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLG 413 (608)
Q Consensus 372 ~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 413 (608)
+++.+ .++.+.|+..+..|.+.|..|....-..++.++...|
T Consensus 235 sa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 235 SALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 44443 5788999999999999988877655555555554444
No 425
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=44.90 E-value=2.1e+02 Score=26.95 Aligned_cols=80 Identities=10% Similarity=0.044 Sum_probs=53.6
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhH----------hcCCHHHH
Q 007329 384 VETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYS----------KCKCIDKA 453 (608)
Q Consensus 384 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~----------~~g~~~~A 453 (608)
.++++.|.+.++.|.-..|..+.-.+.+.=.+..++.+|+.+...... |..|+..|+ -.|++..-
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r-----fd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR-----FDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhh-----hHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 467777778888888888877777777777788888888877643322 344444443 24777777
Q ss_pred HHHHccCCCCCcccH
Q 007329 454 LEVFHQIPDKNVISW 468 (608)
Q Consensus 454 ~~~~~~~~~~~~~~~ 468 (608)
.++++.-..-|+...
T Consensus 338 mkLLQ~yp~tdi~~~ 352 (370)
T KOG4567|consen 338 MKLLQNYPTTDISKM 352 (370)
T ss_pred HHHHhcCCCCCHHHH
Confidence 777776665554433
No 426
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=44.74 E-value=2.6e+02 Score=25.95 Aligned_cols=52 Identities=13% Similarity=0.028 Sum_probs=34.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHH-------HHHHHHhhcCChhhHHHH
Q 007329 269 MISGYFENGEYMKGLMLFIMMREVLVDPDFMTLS-------SVISASELVGDEKLGREV 320 (608)
Q Consensus 269 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-------~ll~~~~~~~~~~~a~~~ 320 (608)
+.+...+.+++++|+..+.+....|+..|..+.+ .+...|...|+.....+.
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~ 67 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDT 67 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHH
Confidence 4455667888999999999999988887765543 344455555555444333
No 427
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=44.74 E-value=26 Score=23.74 Aligned_cols=22 Identities=14% Similarity=-0.067 Sum_probs=10.3
Q ss_pred HHHHHHcCCCchHHHHHHHHHH
Q 007329 370 MISCYEGSVLPDKAVETYQMME 391 (608)
Q Consensus 370 li~~~~~~~~~~~a~~~~~~m~ 391 (608)
+|.+|...|++++|.++++++.
T Consensus 29 vI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 4445555555555555444443
No 428
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=44.73 E-value=1.4e+02 Score=23.58 Aligned_cols=56 Identities=16% Similarity=0.185 Sum_probs=30.5
Q ss_pred cHHHHHHHHhHhcCCHHHHHHHHHhc-----------CCCHHHHHHH----HHHHHhcCCHHHHHHHHHHH
Q 007329 535 FLPNALLDMYVRCGRMKPAWNQFNSN-----------ERDVSAWNIL----LTGYAERGQGALAEEFFRKM 590 (608)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~A~~~~~~~-----------~~~~~~~~~l----~~~~~~~g~~~~A~~~~~~m 590 (608)
.++..|..++...|++++++.--+.. +.+-..|... ..++...|+.++|...|+..
T Consensus 56 ~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 56 FCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 34445566666677766654443332 2233344433 23567789999998877643
No 429
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=44.56 E-value=3.7e+02 Score=27.55 Aligned_cols=97 Identities=9% Similarity=0.041 Sum_probs=50.4
Q ss_pred HHHHHHhH--hCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhcCC
Q 007329 485 LIFFRKMM--LNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSNER 562 (608)
Q Consensus 485 ~~~~~~m~--~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 562 (608)
.+.+++.. +|+..+......++. ...|+...|+.+++++...+- ...++..+.+.+. -.
T Consensus 186 ~~~L~~i~~~Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i~~~~--~~it~~~V~~~lg---------------~~ 246 (484)
T PRK14956 186 QDYSEKLCKIENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAIVFTD--SKLTGVKIRKMIG---------------YH 246 (484)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHHHhCC--CCcCHHHHHHHhC---------------CC
Confidence 34444443 456656665544443 345888888888887654321 1223333322221 12
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 563 DVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 563 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
+...+..++.+....+....|+.++.+|.+.|..|..+
T Consensus 247 ~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~ 284 (484)
T PRK14956 247 GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKF 284 (484)
T ss_pred CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHH
Confidence 33344445555444444456666666666666666554
No 430
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=44.33 E-value=1.6e+02 Score=23.46 Aligned_cols=43 Identities=14% Similarity=0.189 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhCCCCC-ccHHHHHHHHhHhcCCHHHHHHHHHh
Q 007329 517 CGKEIHAHALRIGVAFD-GFLPNALLDMYVRCGRMKPAWNQFNS 559 (608)
Q Consensus 517 ~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 559 (608)
.+.++|..|...|+.-. ...|......+.+.|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77888888887776644 34566777777788888888887764
No 431
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.09 E-value=4.9e+02 Score=28.94 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 007329 265 SWNAMISGYFENGEYMKGLMLFIMMREV 292 (608)
Q Consensus 265 ~~~~li~~~~~~~~~~~a~~~~~~m~~~ 292 (608)
-|..|+..|...|+.++|+++|.+..+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 4888899999999999999999888763
No 432
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.97 E-value=3.6e+02 Score=27.31 Aligned_cols=154 Identities=17% Similarity=0.078 Sum_probs=93.3
Q ss_pred HHHcCCCchHHHHHHHHHHHCC-CCCC--H-----HHHHHHHH-HHHccCChHHHHHHHHHHHHhCCCCchhH--HHHHH
Q 007329 373 CYEGSVLPDKAVETYQMMEAEG-SMPD--E-----ITIASVLS-ACACLGNLDLGIKLHQLAMRTGLISYIII--ANTLI 441 (608)
Q Consensus 373 ~~~~~~~~~~a~~~~~~m~~~g-~~p~--~-----~t~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li 441 (608)
+-.-.|++.+|++-+.+|.+.- -.|. . .....++. .|+..+.++.|+.-|....+.--..|... -.-+.
T Consensus 332 c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlA 411 (629)
T KOG2300|consen 332 CRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLA 411 (629)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHH
Confidence 4445789999999988887642 1233 1 11223333 34567889999888877665433334322 23455
Q ss_pred HHhHhcCCHHHHHHHHccCCCCCcccHHHH--------HHH--HHhCCCchHHHHHHHHhH--hCCC-CC---HHHHHHH
Q 007329 442 DMYSKCKCIDKALEVFHQIPDKNVISWTSI--------ILG--LRLNNRSFEALIFFRKMM--LNLK-PN---SVTLVSI 505 (608)
Q Consensus 442 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l--------~~~--~~~~~~~~~A~~~~~~m~--~~~~-p~---~~~~~~l 505 (608)
..|.+.|+.+.-.++++.+..+|..++..- +.+ ....+++.||..++.+-+ .+.. -+ .-....|
T Consensus 412 i~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLL 491 (629)
T KOG2300|consen 412 ISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLL 491 (629)
T ss_pred HHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHH
Confidence 678899999999999999887766554431 112 246788999998888877 2111 11 1112223
Q ss_pred HHHHhccCcHHHHHHHHHHHH
Q 007329 506 LSACARIGALMCGKEIHAHAL 526 (608)
Q Consensus 506 l~~~~~~~~~~~a~~~~~~~~ 526 (608)
-..+...|+..++.+...-..
T Consensus 492 s~v~lslgn~~es~nmvrpam 512 (629)
T KOG2300|consen 492 SHVFLSLGNTVESRNMVRPAM 512 (629)
T ss_pred HHHHHHhcchHHHHhccchHH
Confidence 334455677777777665443
No 433
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=43.83 E-value=3.3e+02 Score=26.83 Aligned_cols=59 Identities=15% Similarity=0.118 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHccCCC------CCHhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 007329 233 DVVNALITMYVKCGDLVRARLVFDGMPK------RDRISWNAMISGYFENGEYMKGLMLFIMMRE 291 (608)
Q Consensus 233 ~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 291 (608)
..+.-+.+.|..+|+++.|.+.+.+..+ ..+..|-.+|..-.-.|+|........+...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 3566778888888999888888887543 1344566666666666777666666665554
No 434
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=43.51 E-value=3.5e+02 Score=27.06 Aligned_cols=44 Identities=2% Similarity=-0.143 Sum_probs=20.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHH
Q 007329 231 DVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYF 274 (608)
Q Consensus 231 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 274 (608)
+..+......++.+.+..+-...+...+...++......+.++.
T Consensus 99 ~~~vr~aaa~ALg~i~~~~a~~~L~~~L~~~~p~vR~aal~al~ 142 (410)
T TIGR02270 99 PEGLCAGIQAALGWLGGRQAEPWLEPLLAASEPPGRAIGLAALG 142 (410)
T ss_pred CHHHHHHHHHHHhcCCchHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 33344555555555555544444444444444444444444443
No 435
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=43.28 E-value=31 Score=27.61 Aligned_cols=34 Identities=26% Similarity=0.387 Sum_probs=25.9
Q ss_pred HHHhCCCchHHHHHHHHhH-hCCCCCHHHHHHHHHHH
Q 007329 474 GLRLNNRSFEALIFFRKMM-LNLKPNSVTLVSILSAC 509 (608)
Q Consensus 474 ~~~~~~~~~~A~~~~~~m~-~~~~p~~~~~~~ll~~~ 509 (608)
.+...|.-..|..+|++|+ .|.+||. |+.|+..+
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 4556677788999999999 8888887 66666544
No 436
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=41.97 E-value=2.7e+02 Score=25.25 Aligned_cols=115 Identities=12% Similarity=-0.057 Sum_probs=68.6
Q ss_pred HHccCChHHHHHHHHHHHHhCCCCchhH-HHHHHHHhHhcCCHHHHHHHHccCCC--CCc-ccHHHHHHHHHhCCCchHH
Q 007329 409 CACLGNLDLGIKLHQLAMRTGLISYIII-ANTLIDMYSKCKCIDKALEVFHQIPD--KNV-ISWTSIILGLRLNNRSFEA 484 (608)
Q Consensus 409 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~A 484 (608)
|.....++.|..-+.+.+.. .|+..+ |+-=+..+.+..+++.+..--.+..+ ||. .....+..++.....+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHH
Confidence 55666788888866655543 455533 34445566677777766544333332 333 2334455677788889999
Q ss_pred HHHHHHhH-----hCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 007329 485 LIFFRKMM-----LNLKPNSVTLVSILSACARIGALMCGKEIHAHA 525 (608)
Q Consensus 485 ~~~~~~m~-----~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 525 (608)
+..+++.. ..+++.......|..+=-..=...+..++.+..
T Consensus 98 I~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 98 IKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 99999985 224444555566655554444555555555544
No 437
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=41.64 E-value=2.3e+02 Score=26.86 Aligned_cols=156 Identities=13% Similarity=0.026 Sum_probs=0.0
Q ss_pred CChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCC-----------------------CHhHHH
Q 007329 211 PDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKR-----------------------DRISWN 267 (608)
Q Consensus 211 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------------------~~~~~~ 267 (608)
++.+....+++.+++.+.-| +-..+|..+.++--..++..|.+. -...+-
T Consensus 36 ~~~~~~e~l~~~Ird~~Map-------~Ye~lce~~~i~~D~~~l~~m~~~neeki~eld~~iedaeenlGE~ev~ea~~ 108 (393)
T KOG0687|consen 36 QKAAAREKLLAAIRDEDMAP-------LYEYLCESLVIKLDQDLLNSMKKANEEKIKELDEKIEDAEENLGESEVREAML 108 (393)
T ss_pred cCHHHHHHHHHHHHhcccch-------HHHHHHhhcceeccHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchHHHHHHHH
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC----CCCCChhHHHHHHHHHhhcCC-----hhhHHHHHHHHHHhCCCCCcccchH
Q 007329 268 AMISGYFENGEYMKGLMLFIMMREV----LVDPDFMTLSSVISASELVGD-----EKLGREVHGYVIKMGFSDDVSVCNP 338 (608)
Q Consensus 268 ~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~ 338 (608)
....-||+-|+-+.|++.+.+-.+. |.+.|...+..=+..+....+ .++|..++++--...-..-..+|..
T Consensus 109 ~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~G 188 (393)
T KOG0687|consen 109 RKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQG 188 (393)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHH
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC----------CChhhHHHHHHHHH
Q 007329 339 LIKMYLSFGNREEGEKVFSRMES----------KDVVSWTTMISCYE 375 (608)
Q Consensus 339 l~~~~~~~~~~~~a~~~~~~~~~----------~~~~~~~~li~~~~ 375 (608)
+-.+-.+ ++.+|-.+|-+... ++.++|..+-....
T Consensus 189 ly~msvR--~Fk~Aa~Lfld~vsTFtS~El~~Y~~~v~Ytv~~g~i~ 233 (393)
T KOG0687|consen 189 LYCMSVR--NFKEAADLFLDSVSTFTSYELMSYETFVRYTVITGLIA 233 (393)
T ss_pred HHHHHHH--hHHHHHHHHHHHcccccceecccHHHHHHHHHHHhhhe
No 438
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=41.60 E-value=95 Score=28.41 Aligned_cols=53 Identities=13% Similarity=0.065 Sum_probs=36.6
Q ss_pred HHHHHhHhcCCHHHHHHHHHhc----C-C-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007329 539 ALLDMYVRCGRMKPAWNQFNSN----E-R-----DVSAWNILLTGYAERGQGALAEEFFRKMI 591 (608)
Q Consensus 539 ~l~~~~~~~g~~~~A~~~~~~~----~-~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 591 (608)
.+..-|.+.|++++|.++|+.+ . . ...+...+..++...|+.+....+.=+|.
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 4667788888888888888887 1 1 22344566667777888888777655543
No 439
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=41.46 E-value=54 Score=30.57 Aligned_cols=39 Identities=21% Similarity=0.141 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHH
Q 007329 265 SWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSS 303 (608)
Q Consensus 265 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 303 (608)
-|+..|..-.+.||+++|+.++++..+.|+.--..+|..
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 466777888888888888888888887776644444443
No 440
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=41.41 E-value=1.2e+02 Score=30.29 Aligned_cols=49 Identities=16% Similarity=0.222 Sum_probs=35.6
Q ss_pred CChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhC
Q 007329 175 GFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFG 227 (608)
Q Consensus 175 g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 227 (608)
+.+++-+++++...+.| .+| .....|+.|.+.++++.|..-+++-++.|
T Consensus 68 ~~~~e~i~lL~~l~~~g--~ad--~lp~TIDSyTR~n~y~~A~~~l~~s~~~~ 116 (480)
T TIGR01503 68 ALLDEHIELLRTLQEEG--GAD--FLPSTIDAYTRQNRYDEAAVGIKESIKAG 116 (480)
T ss_pred CcHHHHHHHHHHHHHcc--CCC--ccceeeecccccccHHHHHHHHHhhhhcC
Confidence 44677777888887766 344 34456788888999999998888877754
No 441
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=41.11 E-value=4.6e+02 Score=27.71 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=20.1
Q ss_pred cchHHHHHHHHhCCChHHHHHHHHH
Q 007329 61 KNPNSRLNELCLNGSLEQALKYLDS 85 (608)
Q Consensus 61 ~~~~~ll~~~~~~~~~~~A~~~~~~ 85 (608)
..|+..+..+.-+|.+++|..++..
T Consensus 149 p~FW~~v~~lvlrG~~~~a~~lL~~ 173 (566)
T PF07575_consen 149 PDFWDYVQRLVLRGLFDQARQLLRL 173 (566)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHH-T
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHh
Confidence 4577899999999999999999954
No 442
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=41.06 E-value=43 Score=33.23 Aligned_cols=53 Identities=13% Similarity=0.102 Sum_probs=26.4
Q ss_pred HhCCCchHHHHHHHHhHhCCCCCHHHHHHH-HHHHhccCcHHHHHHHHHHHHHhC
Q 007329 476 RLNNRSFEALIFFRKMMLNLKPNSVTLVSI-LSACARIGALMCGKEIHAHALRIG 529 (608)
Q Consensus 476 ~~~~~~~~A~~~~~~m~~~~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~ 529 (608)
.+.+.++.|+.++.+++ .+.||...|-.. ..++.+.+++..|+.=...+++..
T Consensus 15 l~~~~fd~avdlysKaI-~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d 68 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAI-ELDPNCAIYFANRALAHLKVESFGGALHDALKAIELD 68 (476)
T ss_pred cccchHHHHHHHHHHHH-hcCCcceeeechhhhhheeechhhhHHHHHHhhhhcC
Confidence 34445555555555555 344443333222 245555556555555555555443
No 443
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=41.06 E-value=1.5e+02 Score=25.49 Aligned_cols=20 Identities=15% Similarity=0.187 Sum_probs=11.9
Q ss_pred HHHhHhcCCHHHHHHHHHhc
Q 007329 541 LDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 541 ~~~~~~~g~~~~A~~~~~~~ 560 (608)
+-.|.+.|.+++|.+++++.
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~ 137 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRL 137 (200)
T ss_pred HHHHHhcCchHHHHHHHHHH
Confidence 34455666666666666665
No 444
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=41.02 E-value=5.5e+02 Score=28.60 Aligned_cols=48 Identities=8% Similarity=-0.002 Sum_probs=22.3
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHH-hCCCCCccHHHHHHHHhHhcC
Q 007329 501 TLVSILSACARIGALMCGKEIHAHALR-IGVAFDGFLPNALLDMYVRCG 548 (608)
Q Consensus 501 ~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g 548 (608)
++..-.......|++.++.+++.++.+ .|-.++...|..+++.+...|
T Consensus 1233 ~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lg 1281 (1304)
T KOG1114|consen 1233 VWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLG 1281 (1304)
T ss_pred heehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhC
Confidence 333333444445555555555555543 334444444444444444433
No 445
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=40.44 E-value=1.2e+02 Score=22.19 Aligned_cols=37 Identities=19% Similarity=0.230 Sum_probs=25.3
Q ss_pred hcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCChh
Q 007329 244 KCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYM 280 (608)
Q Consensus 244 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 280 (608)
...+.++|.++++.++.++..+|..+..++-..|...
T Consensus 42 ~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~ 78 (84)
T cd08326 42 AGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTD 78 (84)
T ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchH
Confidence 4455677777777777777777777777776666543
No 446
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=40.41 E-value=1e+02 Score=20.07 Aligned_cols=20 Identities=10% Similarity=-0.069 Sum_probs=10.1
Q ss_pred HHHhHhcCCHHHHHHHHHhc
Q 007329 541 LDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 541 ~~~~~~~g~~~~A~~~~~~~ 560 (608)
.-++.+.|++++|.+..+.+
T Consensus 8 Aig~ykl~~Y~~A~~~~~~l 27 (53)
T PF14853_consen 8 AIGHYKLGEYEKARRYCDAL 27 (53)
T ss_dssp HHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHH
Confidence 33455555555555555554
No 447
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=40.15 E-value=4.3e+02 Score=27.40 Aligned_cols=43 Identities=19% Similarity=0.123 Sum_probs=23.9
Q ss_pred HHHHHHHhH--hCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 007329 484 ALIFFRKMM--LNLKPNSVTLVSILSACARIGALMCGKEIHAHALRI 528 (608)
Q Consensus 484 A~~~~~~m~--~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 528 (608)
....++... +++..+......++.. ..|++..|...++++...
T Consensus 192 l~~~L~~i~~~egi~ie~eAL~~Ia~~--s~GslR~al~~Ldkai~~ 236 (507)
T PRK06645 192 IFKLLEYITKQENLKTDIEALRIIAYK--SEGSARDAVSILDQAASM 236 (507)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHh
Confidence 334444443 4555565555555443 347777777777766543
No 448
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=39.76 E-value=51 Score=32.79 Aligned_cols=99 Identities=10% Similarity=-0.028 Sum_probs=66.8
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc-CCC---HHHHHHHHHHHHhcCCHH
Q 007329 506 LSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN-ERD---VSAWNILLTGYAERGQGA 581 (608)
Q Consensus 506 l~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~---~~~~~~l~~~~~~~g~~~ 581 (608)
+..+...+.++.|..++.++++.... ....|..=..++.+.+++..|+.=+.++ +-| ...|--=..++.+.+.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpn-ca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPN-CAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCc-ceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHH
Confidence 44556678899999999999886442 3333333347788999999998877666 333 223434445566667777
Q ss_pred HHHHHHHHHHHcCCCCCch--hhhhccc
Q 007329 582 LAEEFFRKMIDSKGNWRKL--MGLFRKC 607 (608)
Q Consensus 582 ~A~~~~~~m~~~g~~p~~~--~~~~~ac 607 (608)
+|...|+.... +.|++. ++.+..|
T Consensus 90 ~A~~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 90 KALLDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHhhh--cCcCcHHHHHHHHHH
Confidence 77777777765 588887 6666555
No 449
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=39.70 E-value=3.1e+02 Score=25.32 Aligned_cols=85 Identities=7% Similarity=-0.033 Sum_probs=50.0
Q ss_pred HHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhH--hCCCC-----CHHHHHHHHHHHhcc
Q 007329 440 LIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMM--LNLKP-----NSVTLVSILSACARI 512 (608)
Q Consensus 440 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~--~~~~p-----~~~~~~~ll~~~~~~ 512 (608)
++..|.|.-+...=..+|+....| ..++.-|.+.|+.+.|-.++--+. ++... +...-..++......
T Consensus 159 Ivv~C~RKtE~~~W~~LF~~lg~P-----~dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~ 233 (258)
T PF07064_consen 159 IVVNCARKTEVRYWPYLFDYLGSP-----RDLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALES 233 (258)
T ss_pred HHHHHHHhhHHHHHHHHHHhcCCH-----HHHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhc
Confidence 333444444444444555554322 356677777888888777766665 22222 333444566667777
Q ss_pred CcHHHHHHHHHHHHHhC
Q 007329 513 GALMCGKEIHAHALRIG 529 (608)
Q Consensus 513 ~~~~~a~~~~~~~~~~~ 529 (608)
++++-+.++.+-+...+
T Consensus 234 ~~w~Lc~eL~RFL~~ld 250 (258)
T PF07064_consen 234 GDWDLCFELVRFLKALD 250 (258)
T ss_pred ccHHHHHHHHHHHHHhC
Confidence 88888887777666543
No 450
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=39.59 E-value=1e+02 Score=30.45 Aligned_cols=95 Identities=12% Similarity=0.030 Sum_probs=68.6
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHccCCCCCc----------------ccHHHHHHHHHhCCCchHHHHHHHHhH----
Q 007329 433 YIIIANTLIDMYSKCKCIDKALEVFHQIPDKNV----------------ISWTSIILGLRLNNRSFEALIFFRKMM---- 492 (608)
Q Consensus 433 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~A~~~~~~m~---- 492 (608)
+.....-++..+....++.+..+..+...+|+. .+...|+..++-.||+..|+++++.+-
T Consensus 74 ~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~ 153 (404)
T PF10255_consen 74 NVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKK 153 (404)
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccc
Confidence 444444456667777888888888887665432 134456778889999999999998875
Q ss_pred ---hCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 007329 493 ---LNLKP-NSVTLVSILSACARIGALMCGKEIHAHALR 527 (608)
Q Consensus 493 ---~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 527 (608)
..+++ ...+|..+.-+|...+++.+|.+.|....-
T Consensus 154 ~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 154 GLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred hhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222 344677788888999999999999998774
No 451
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=39.54 E-value=1.9e+02 Score=25.90 Aligned_cols=94 Identities=16% Similarity=-0.012 Sum_probs=59.1
Q ss_pred CCCchhHHHHHHHHhHhcCCHHHHHHHHccCC---C--CCcccHH--HHHHHHHhCCCchHHHHHHHHhH-hCCCCCHHH
Q 007329 430 LISYIIIANTLIDMYSKCKCIDKALEVFHQIP---D--KNVISWT--SIILGLRLNNRSFEALIFFRKMM-LNLKPNSVT 501 (608)
Q Consensus 430 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~--~~~~~~~--~l~~~~~~~~~~~~A~~~~~~m~-~~~~p~~~~ 501 (608)
+.+...-+|.|+--|.-...+.+|-+.|..-. . .+..+++ .-|....+.|+.++|++...... +-+..|...
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l 101 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNREL 101 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhH
Confidence 34555556777777776666777777776533 2 2333333 35677899999999999999887 555555433
Q ss_pred HHHHH----HHHhccCcHHHHHHHHH
Q 007329 502 LVSIL----SACARIGALMCGKEIHA 523 (608)
Q Consensus 502 ~~~ll----~~~~~~~~~~~a~~~~~ 523 (608)
+-.|. --..+.|..++|+++.+
T Consensus 102 ~F~Lq~q~lIEliR~~~~eeal~F~q 127 (228)
T KOG2659|consen 102 FFHLQQLHLIELIREGKTEEALEFAQ 127 (228)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 33322 22356677777777666
No 452
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=39.50 E-value=2e+02 Score=23.00 Aligned_cols=43 Identities=14% Similarity=0.142 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHH
Q 007329 382 KAVETYQMMEAEGSMPD-EITIASVLSACACLGNLDLGIKLHQL 424 (608)
Q Consensus 382 ~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~ 424 (608)
.+.++|+.|..+|+--. ..-|......+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 67777777776664433 34455556666666777777666654
No 453
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=39.16 E-value=1e+02 Score=22.53 Aligned_cols=39 Identities=13% Similarity=0.082 Sum_probs=28.2
Q ss_pred hcCChhhHHHHHcccCCCCcchHHHHHHHHHhcCChhHH
Q 007329 142 KFGDLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEA 180 (608)
Q Consensus 142 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 180 (608)
...+.+.|.++++.++.++..+|..+.+++-..|...-|
T Consensus 42 ~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 42 AGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 445677788888888888888888888887776654433
No 454
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=38.50 E-value=2.2e+02 Score=23.18 Aligned_cols=65 Identities=11% Similarity=-0.085 Sum_probs=40.5
Q ss_pred CCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHH-hCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 496 KPNSVTLVSILSACARIG---ALMCGKEIHAHALR-IGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 496 ~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
.++..+--.+.+++.+.. +..+...+++.+.+ ..+.-.....-.|.-++.|.|++++++.+++..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~l 97 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDAL 97 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHH
Confidence 556666666777777665 44556677777775 222222233334566778888888888876664
No 455
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=37.70 E-value=32 Score=23.39 Aligned_cols=25 Identities=16% Similarity=0.370 Sum_probs=18.9
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCcc
Q 007329 174 AGFFDEALSLYQRMFWVGGVKPDVY 198 (608)
Q Consensus 174 ~g~~~~a~~~~~~m~~~~~~~p~~~ 198 (608)
.-+++.|+..|.++...+.++|+..
T Consensus 38 ~Wd~~~Al~~F~~lk~~~~IP~eAF 62 (63)
T smart00804 38 NWDYERALKNFTELKSEGSIPPEAF 62 (63)
T ss_pred CCCHHHHHHHHHHHHhcCCCChhhc
Confidence 4578889999999887776777643
No 456
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=37.52 E-value=2.9e+02 Score=28.40 Aligned_cols=58 Identities=12% Similarity=0.125 Sum_probs=36.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHccCCCC--CHh---HHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 007329 235 VNALITMYVKCGDLVRARLVFDGMPKR--DRI---SWNAMISGYFENGEYMKGLMLFIMMREV 292 (608)
Q Consensus 235 ~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~ 292 (608)
...++.-|.+.+++++|..++..|.-. ... +.+.+.+.+.+..--.+....++.+...
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 346777899999999999999988753 222 3344445555555445555555555443
No 457
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=37.07 E-value=41 Score=35.42 Aligned_cols=7 Identities=29% Similarity=0.909 Sum_probs=3.2
Q ss_pred CCCChhH
Q 007329 294 VDPDFMT 300 (608)
Q Consensus 294 ~~p~~~~ 300 (608)
++|+...
T Consensus 797 iKP~i~a 803 (1102)
T KOG1924|consen 797 IKPDIVA 803 (1102)
T ss_pred cChHHHH
Confidence 4454443
No 458
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.05 E-value=5e+02 Score=26.97 Aligned_cols=88 Identities=13% Similarity=0.122 Sum_probs=45.6
Q ss_pred hCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhcCCCHHHHHHHHH
Q 007329 493 LNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSNERDVSAWNILLT 572 (608)
Q Consensus 493 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~l~~ 572 (608)
+|+..+......++... .|++..|..+++++...|- ...+...+-.++ | ..+......++.
T Consensus 194 egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~--~~It~~~V~~~l---g------------~~~~~~i~~ll~ 254 (509)
T PRK14958 194 ENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGN--GKVLIADVKTML---G------------TIEPLLLFDILE 254 (509)
T ss_pred cCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCC--CCcCHHHHHHHH---C------------CCCHHHHHHHHH
Confidence 45666666555555443 4778888887776654431 111111111111 0 223334444444
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 573 GYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 573 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
++. .|+.+.+.+++++|.+.|..|..+
T Consensus 255 al~-~~d~~~~l~~~~~l~~~g~~~~~i 281 (509)
T PRK14958 255 ALA-AKAGDRLLGCVTRLVEQGVDFSNA 281 (509)
T ss_pred HHH-cCCHHHHHHHHHHHHHcCCCHHHH
Confidence 443 366677777777777777666544
No 459
>PRK12798 chemotaxis protein; Reviewed
Probab=36.58 E-value=4.4e+02 Score=26.18 Aligned_cols=146 Identities=14% Similarity=0.093 Sum_probs=72.3
Q ss_pred cCCHHHHHHHHccCCC----CCcccHHHHHHH-HHhCCCchHHHHHHHHhHhCCCCCHH----HHHHHHHHHhccCcHHH
Q 007329 447 CKCIDKALEVFHQIPD----KNVISWTSIILG-LRLNNRSFEALIFFRKMMLNLKPNSV----TLVSILSACARIGALMC 517 (608)
Q Consensus 447 ~g~~~~A~~~~~~~~~----~~~~~~~~l~~~-~~~~~~~~~A~~~~~~m~~~~~p~~~----~~~~ll~~~~~~~~~~~ 517 (608)
.|+.++|.+.|..+.. +....|-.|+.+ .....+..+|+++|+... -.-|... ....-+-.....|+.++
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aR-LlaPGTLvEEAALRRsi~la~~~g~~~r 203 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQAR-LLAPGTLVEEAALRRSLFIAAQLGDADK 203 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHH-HhCCchHHHHHHHHHhhHHHHhcCcHHH
Confidence 5677777777766652 233445555544 344556677777777665 2223222 22233334456666666
Q ss_pred HHHHHHHHH-HhCCCCCccHH-HHHHHHhHh---cCCHHHHHHHHHhcCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007329 518 GKEIHAHAL-RIGVAFDGFLP-NALLDMYVR---CGRMKPAWNQFNSNERD--VSAWNILLTGYAERGQGALAEEFFRKM 590 (608)
Q Consensus 518 a~~~~~~~~-~~~~~p~~~~~-~~l~~~~~~---~g~~~~A~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m 590 (608)
+..+-.... +....|-..-| ..+...+.+ .-+.+.-.+++..|.|+ ...|-.+...-.-.|+.+.|.-.-++.
T Consensus 204 f~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A 283 (421)
T PRK12798 204 FEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERA 283 (421)
T ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 655544333 22222222111 122222222 22334444555555332 346666666666667776666666665
Q ss_pred HHc
Q 007329 591 IDS 593 (608)
Q Consensus 591 ~~~ 593 (608)
+..
T Consensus 284 ~~L 286 (421)
T PRK12798 284 LKL 286 (421)
T ss_pred HHh
Confidence 543
No 460
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=36.23 E-value=1.7e+02 Score=21.41 Aligned_cols=42 Identities=14% Similarity=0.169 Sum_probs=25.5
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCC
Q 007329 420 KLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIP 461 (608)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 461 (608)
++|+.....|+..|..+|..+++...-.=..+...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 566666666666666666666666555555555555555544
No 461
>PRK09857 putative transposase; Provisional
Probab=36.22 E-value=1.9e+02 Score=27.30 Aligned_cols=63 Identities=11% Similarity=0.150 Sum_probs=37.9
Q ss_pred HHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchh
Q 007329 539 ALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKLM 601 (608)
Q Consensus 539 ~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 601 (608)
.++.-..+.|+.++-.++++.. ++.....-++..-+...|.-+++.++.++|+..|+.++.+.
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~~I~ 277 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLADIM 277 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 3443334555555444444433 22233344555666666776788899999999988877663
No 462
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=35.48 E-value=4e+02 Score=25.37 Aligned_cols=80 Identities=10% Similarity=-0.016 Sum_probs=40.4
Q ss_pred hhhHHHHHHHHHHhCC----CCchhHHHHHHHHHHhcCCHHHHHHHHccCCCC-CHhHHHHHHHHHHhcCChhHHHHHHH
Q 007329 213 LKRGKEVHVHVIRFGY----EADVDVVNALITMYVKCGDLVRARLVFDGMPKR-DRISWNAMISGYFENGEYMKGLMLFI 287 (608)
Q Consensus 213 ~~~a~~~~~~~~~~g~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~ 287 (608)
.+.|.+.|+.....+. ..+......+.....+.|+.+.-..+++..... +......++.+++...+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 3456666666665321 234444455555555666655544444444432 45555666666666666666666666
Q ss_pred HHHHC
Q 007329 288 MMREV 292 (608)
Q Consensus 288 ~m~~~ 292 (608)
.....
T Consensus 226 ~~l~~ 230 (324)
T PF11838_consen 226 LLLSN 230 (324)
T ss_dssp HHHCT
T ss_pred HHcCC
Confidence 65554
No 463
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.14 E-value=5.2e+02 Score=27.58 Aligned_cols=44 Identities=14% Similarity=0.197 Sum_probs=25.0
Q ss_pred HHHHHHHHhH--hCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 007329 483 EALIFFRKMM--LNLKPNSVTLVSILSACARIGALMCGKEIHAHALRI 528 (608)
Q Consensus 483 ~A~~~~~~m~--~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 528 (608)
+..+.+++.. +|+..+......++.. ..|++..++.+++++...
T Consensus 187 ei~~~L~~i~~~egi~ie~~AL~~La~~--s~GslR~al~lLdq~ia~ 232 (618)
T PRK14951 187 TVLEHLTQVLAAENVPAEPQALRLLARA--ARGSMRDALSLTDQAIAF 232 (618)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHh
Confidence 3344444443 5666666665555553 347777777777665543
No 464
>PF10963 DUF2765: Protein of unknown function (DUF2765); InterPro: IPR024406 This family of proteins with no known function is found in phages and suspected prophages.
Probab=34.31 E-value=88 Score=22.74 Aligned_cols=64 Identities=13% Similarity=-0.014 Sum_probs=37.2
Q ss_pred CCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 007329 529 GVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN--ERDVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWR 598 (608)
Q Consensus 529 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 598 (608)
.+.|+...|+.+++...+.++..-|..++.+. +.+...+..++ ...+..|.++.....+. +.|+
T Consensus 11 ~F~pt~~~yn~yiN~~~~~nkVaPa~n~L~r~V~~e~KeaL~~ll-----e~~PGaa~qia~~v~ee-y~P~ 76 (83)
T PF10963_consen 11 TFNPTPTAYNKYINEMAMDNKVAPAHNYLMRIVDPESKEALKELL-----EENPGAAMQIAGAVNEE-YAPD 76 (83)
T ss_pred EeccCHHHHHHHHHHhccCCCchHHHHHHHHHcCHHHHHHHHHHH-----HHCCCHHHHHHHHHHHh-hCCC
Confidence 35667777777777777777777777777666 22333444444 12233356666655543 4444
No 465
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=34.09 E-value=5.6e+02 Score=27.67 Aligned_cols=57 Identities=12% Similarity=0.125 Sum_probs=28.8
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHH----------HHHHHHHHHHccCChHHHHHHHHHHHH
Q 007329 368 TTMISCYEGSVLPDKAVETYQMMEAEGSMPDEI----------TIASVLSACACLGNLDLGIKLHQLAMR 427 (608)
Q Consensus 368 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~----------t~~~ll~~~~~~~~~~~a~~~~~~~~~ 427 (608)
..++-.|....+++..+++.+.++.. ||.. .|...++--.+.|+-++|+.+.-.+.+
T Consensus 205 ~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve 271 (1226)
T KOG4279|consen 205 SNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVE 271 (1226)
T ss_pred HHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHH
Confidence 33444555555666666666666553 3221 122333333445666666666555544
No 466
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.99 E-value=4.5e+02 Score=28.93 Aligned_cols=177 Identities=15% Similarity=0.134 Sum_probs=105.3
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 007329 174 AGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARL 253 (608)
Q Consensus 174 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 253 (608)
..++++.+.+.+.-.--| ..+|.-+.+.|-.+-|+...+ |..+. ......+|+++.|++
T Consensus 606 ~k~ydeVl~lI~ns~LvG---------qaiIaYLqKkgypeiAL~FVk---------D~~tR---F~LaLe~gnle~ale 664 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG---------QAIIAYLQKKGYPEIALHFVK---------DERTR---FELALECGNLEVALE 664 (1202)
T ss_pred hhhhHHHHHHHHhcCccc---------HHHHHHHHhcCCcceeeeeec---------Ccchh---eeeehhcCCHHHHHH
Confidence 455666665554422111 234444556666666655443 22221 233467899999998
Q ss_pred HHccCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCc
Q 007329 254 VFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDV 333 (608)
Q Consensus 254 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 333 (608)
.-..+. |..+|..|...-.+.|+.+-|+..|++.+. |..|--.|.-.|+.++..++.+.+.... |.
T Consensus 665 ~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~r~---D~ 730 (1202)
T KOG0292|consen 665 AAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEIRN---DA 730 (1202)
T ss_pred HHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHhhh---hh
Confidence 877765 566899999999999999999988887664 2333334556778777776666554332 21
Q ss_pred ccchHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHcCCCchHHHHHHHHHHHC
Q 007329 334 SVCNPLIKMYLSFGNREEGEKVFSRMESKDVVSWTTMISCYEGSVLPDKAVETYQMMEAE 393 (608)
Q Consensus 334 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 393 (608)
. .......-.|++++-.++++.....+..-.. -...|.-++|.++.++....
T Consensus 731 ~---~~~qnalYl~dv~ervkIl~n~g~~~laylt-----a~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 731 T---GQFQNALYLGDVKERVKILENGGQLPLAYLT-----AAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred H---HHHHHHHHhccHHHHHHHHHhcCcccHHHHH-----HhhcCcHHHHHHHHHhhccc
Confidence 1 1112223356777777777766553332221 23456667888888777653
No 467
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=33.92 E-value=3.8e+02 Score=27.74 Aligned_cols=102 Identities=9% Similarity=0.037 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCCHHHHHHHHc
Q 007329 178 DEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYE-ADVDVVNALITMYVKCGDLVRARLVFD 256 (608)
Q Consensus 178 ~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~ 256 (608)
++..+++....+..|+..+......++.. ..|++..|...++.+...+-. ....+. +.+.+++.
T Consensus 190 ~el~~~L~~i~~~egi~ie~eAL~~Ia~~--s~GslR~al~~Ldkai~~~~~~~~~It~-------------~~V~~llg 254 (507)
T PRK06645 190 EEIFKLLEYITKQENLKTDIEALRIIAYK--SEGSARDAVSILDQAASMSAKSDNIISP-------------QVINQMLG 254 (507)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhhccCCCCcCH-------------HHHHHHHC
Confidence 34455555544443466666655555543 347777777777766543210 001111 11111111
Q ss_pred cCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh
Q 007329 257 GMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDF 298 (608)
Q Consensus 257 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 298 (608)
..+....-.++... ..|+..+|+.+++++...|..|..
T Consensus 255 ---~~~~~~if~L~~ai-~~~d~~~Al~~l~~L~~~g~~~~~ 292 (507)
T PRK06645 255 ---LVDSSVIIEFVEYI-IHRETEKAINLINKLYGSSVNLEI 292 (507)
T ss_pred ---CCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCHHH
Confidence 11222333344444 358899999999999988876543
No 468
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=33.87 E-value=2.6e+02 Score=22.74 Aligned_cols=68 Identities=7% Similarity=-0.023 Sum_probs=46.9
Q ss_pred CCCccHHHHHHHHhHhcCC---HHHHHHHHHhc-C---C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 531 AFDGFLPNALLDMYVRCGR---MKPAWNQFNSN-E---R--DVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 531 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~---~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
.++..+--.+..++.+..+ ..+.+.+++++ + | ......-|.-++.+.++++.++.+.+.+++. +||+-
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~--e~~n~ 105 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET--EPNNR 105 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh--CCCcH
Confidence 3445555567777777665 45566677776 2 2 2334445566888999999999999999986 66655
No 469
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=33.82 E-value=5.8e+02 Score=28.43 Aligned_cols=32 Identities=13% Similarity=0.051 Sum_probs=16.9
Q ss_pred hCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 007329 493 LNLKPNSVTLVSILSACARIGALMCGKEIHAHAL 526 (608)
Q Consensus 493 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 526 (608)
+++..+...+..++..+ .|+...++..++++.
T Consensus 195 EGv~id~eal~lLa~~s--gGdlR~Al~eLEKLi 226 (824)
T PRK07764 195 EGVPVEPGVLPLVIRAG--GGSVRDSLSVLDQLL 226 (824)
T ss_pred cCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHH
Confidence 35555555544443333 356666666666655
No 470
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=33.80 E-value=3.7e+02 Score=24.54 Aligned_cols=53 Identities=9% Similarity=-0.051 Sum_probs=25.7
Q ss_pred HHHcCCCchHHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHc-cCChHHHHHHHHHH
Q 007329 373 CYEGSVLPDKAVETYQMMEAE-G-SMPDEITIASVLSACAC-LGNLDLGIKLHQLA 425 (608)
Q Consensus 373 ~~~~~~~~~~a~~~~~~m~~~-g-~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~ 425 (608)
..-+.++++++...++++.+. + ...+..--+.|-.+|-. .|....+.+++..+
T Consensus 10 laeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~si 65 (244)
T smart00101 10 LAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISSI 65 (244)
T ss_pred HHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhHH
Confidence 344456666666666665553 2 24444444444444422 34445555555543
No 471
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=33.46 E-value=1.6e+02 Score=26.87 Aligned_cols=51 Identities=12% Similarity=-0.026 Sum_probs=25.6
Q ss_pred HHHHHHhCCCchHHHHHHHHhH---h--C-CCCCHHHHHHHHHHHhccCcHHHHHHH
Q 007329 471 IILGLRLNNRSFEALIFFRKMM---L--N-LKPNSVTLVSILSACARIGALMCGKEI 521 (608)
Q Consensus 471 l~~~~~~~~~~~~A~~~~~~m~---~--~-~~p~~~~~~~ll~~~~~~~~~~~a~~~ 521 (608)
+..-|.+.|++++|.++|+.+. . | ..+...+...+..+..+.|+.+....+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3445566666666666666654 1 1 122233344444555555555554443
No 472
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.00 E-value=1.4e+02 Score=32.49 Aligned_cols=131 Identities=14% Similarity=0.072 Sum_probs=72.9
Q ss_pred hHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 007329 444 YSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHA 523 (608)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 523 (608)
...+|+++.|++.-.++-+ ...|..|...-..+|+.+-|...|++.. .|..|--.|.-.|+.++-.++..
T Consensus 653 aLe~gnle~ale~akkldd--~d~w~rLge~Al~qgn~~IaEm~yQ~~k--------nfekLsfLYliTgn~eKL~Km~~ 722 (1202)
T KOG0292|consen 653 ALECGNLEVALEAAKKLDD--KDVWERLGEEALRQGNHQIAEMCYQRTK--------NFEKLSFLYLITGNLEKLSKMMK 722 (1202)
T ss_pred ehhcCCHHHHHHHHHhcCc--HHHHHHHHHHHHHhcchHHHHHHHHHhh--------hhhheeEEEEEeCCHHHHHHHHH
Confidence 4456777777766655543 3457777777777777777777777664 12222223444566665554444
Q ss_pred HHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 007329 524 HALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSNERDVSAWNILLTGYAERGQGALAEEFFRKMIDSK 594 (608)
Q Consensus 524 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 594 (608)
.+...+ |... .+.. -.-.|+.++=.++++...--+..|-. -..+|.-++|.++.++....+
T Consensus 723 iae~r~---D~~~--~~qn-alYl~dv~ervkIl~n~g~~~laylt----a~~~G~~~~ae~l~ee~~~~~ 783 (1202)
T KOG0292|consen 723 IAEIRN---DATG--QFQN-ALYLGDVKERVKILENGGQLPLAYLT----AAAHGLEDQAEKLGEELEKQV 783 (1202)
T ss_pred HHHhhh---hhHH--HHHH-HHHhccHHHHHHHHHhcCcccHHHHH----HhhcCcHHHHHHHHHhhcccc
Confidence 332211 2111 1111 11247777777777776333333322 234688888999999887654
No 473
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=32.90 E-value=5.2e+02 Score=25.91 Aligned_cols=58 Identities=10% Similarity=-0.101 Sum_probs=27.5
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCChhHHHHHHHH
Q 007329 230 ADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIM 288 (608)
Q Consensus 230 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 288 (608)
++..+...-+.++...++.+..-.+..-....|...-..-+.+....|. .+|...+..
T Consensus 159 ~d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~ 216 (410)
T TIGR02270 159 EDALVRAAALRALGELPRRLSESTLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCRR 216 (410)
T ss_pred CCHHHHHHHHHHHHhhccccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHH
Confidence 3444444455555555444333333333334455555555555555555 444444444
No 474
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=32.82 E-value=2.9e+02 Score=29.15 Aligned_cols=47 Identities=17% Similarity=0.089 Sum_probs=27.0
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHhC--CCCCcccchHHHHHHHhcCCh
Q 007329 303 SVISASELVGDEKLGREVHGYVIKMG--FSDDVSVCNPLIKMYLSFGNR 349 (608)
Q Consensus 303 ~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~ 349 (608)
+++.+|...|++-.+.++++...... -..-...+|..++...+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 66777777777777777777665442 111123445555555555543
No 475
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=32.69 E-value=2.3e+02 Score=23.31 Aligned_cols=32 Identities=16% Similarity=0.111 Sum_probs=14.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCChhH
Q 007329 269 MISGYFENGEYMKGLMLFIMMREVLVDPDFMT 300 (608)
Q Consensus 269 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 300 (608)
++..+.+.++.-.|.++++++.+.+...+..|
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~islaT 57 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPGISLAT 57 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhH
Confidence 33444444444445555555555444444433
No 476
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=32.64 E-value=2.4e+02 Score=29.62 Aligned_cols=71 Identities=13% Similarity=0.060 Sum_probs=43.2
Q ss_pred HHHHHHHhCCCchHHHHHHHHhH---hCCCCCHHHHHHHHHHHhccCcHH------HHHHHHHHHHHhCCCCCccHHHHH
Q 007329 470 SIILGLRLNNRSFEALIFFRKMM---LNLKPNSVTLVSILSACARIGALM------CGKEIHAHALRIGVAFDGFLPNAL 540 (608)
Q Consensus 470 ~l~~~~~~~~~~~~A~~~~~~m~---~~~~p~~~~~~~ll~~~~~~~~~~------~a~~~~~~~~~~~~~p~~~~~~~l 540 (608)
++..+|...|++..+.++++... ++.+.=...||..++.+.+.|.++ .+.+.++... +.-|..+|..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 67788888888888888888776 333334456677777777777553 2333333333 33355566555
Q ss_pred HHH
Q 007329 541 LDM 543 (608)
Q Consensus 541 ~~~ 543 (608)
+.+
T Consensus 110 ~~~ 112 (1117)
T COG5108 110 CQA 112 (1117)
T ss_pred HHh
Confidence 543
No 477
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.63 E-value=5.9e+02 Score=26.46 Aligned_cols=98 Identities=9% Similarity=0.022 Sum_probs=47.5
Q ss_pred HHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCC
Q 007329 180 ALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMP 259 (608)
Q Consensus 180 a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 259 (608)
..+.+....+..|+..+......++... .|++..|..++++....|- ...+. +...+++ .
T Consensus 183 i~~~l~~il~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~--~~It~-------------~~V~~~l---g 242 (509)
T PRK14958 183 IAAHCQHLLKEENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGN--GKVLI-------------ADVKTML---G 242 (509)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCC--CCcCH-------------HHHHHHH---C
Confidence 3344444433333555555555554442 4666677766665544320 01111 1111111 1
Q ss_pred CCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh
Q 007329 260 KRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDF 298 (608)
Q Consensus 260 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 298 (608)
..+......++.++. .++.+.+++++++|...|..|..
T Consensus 243 ~~~~~~i~~ll~al~-~~d~~~~l~~~~~l~~~g~~~~~ 280 (509)
T PRK14958 243 TIEPLLLFDILEALA-AKAGDRLLGCVTRLVEQGVDFSN 280 (509)
T ss_pred CCCHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCHHH
Confidence 123333344444433 47777788888888877766543
No 478
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=32.45 E-value=1.9e+02 Score=24.55 Aligned_cols=37 Identities=5% Similarity=-0.029 Sum_probs=17.0
Q ss_pred CChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCC
Q 007329 312 GDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGN 348 (608)
Q Consensus 312 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 348 (608)
++.-.|.++++.+.+.+...+..|....+..+.+.|-
T Consensus 39 ~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 39 PGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred CCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 3344455555555554444444444444444444443
No 479
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=31.94 E-value=7.7e+02 Score=27.60 Aligned_cols=52 Identities=15% Similarity=0.104 Sum_probs=32.0
Q ss_pred CCHhHHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCCChhHHHHHHHHHhhcC
Q 007329 261 RDRISWNAMISGYFENGEYMKGLMLFIMMRE-VLVDPDFMTLSSVISASELVG 312 (608)
Q Consensus 261 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~~ 312 (608)
.|..+|..-...+...|++..+.+++.++.+ .|-.++...|..++..+...|
T Consensus 1229 ~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lg 1281 (1304)
T KOG1114|consen 1229 SDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLG 1281 (1304)
T ss_pred CCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhC
Confidence 3555666666666677777777777777755 345555555555555444444
No 480
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=31.77 E-value=2.2e+02 Score=29.25 Aligned_cols=56 Identities=7% Similarity=0.057 Sum_probs=35.2
Q ss_pred hHHHHHhhhcCChhhHHHHHcccCCC--Ccc---hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007329 134 NAFLSMFVKFGDLGHAWYVFGKMCDR--DLF---SWNVLIGGYAKAGFFDEALSLYQRMFW 189 (608)
Q Consensus 134 ~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~ 189 (608)
..++.-|.+.+++++|..++..|.-. ... +.+.+.+.+.+..--++....++.+..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 46777899999999999999998543 222 334444555555434444445555543
No 481
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=31.63 E-value=1e+02 Score=23.76 Aligned_cols=21 Identities=14% Similarity=0.192 Sum_probs=11.3
Q ss_pred HHHHHHhCCCchHHHHHHHHh
Q 007329 471 IILGLRLNNRSFEALIFFRKM 491 (608)
Q Consensus 471 l~~~~~~~~~~~~A~~~~~~m 491 (608)
++..|...++.++|...++++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 444555556666666666554
No 482
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=31.55 E-value=5.8e+02 Score=26.07 Aligned_cols=96 Identities=13% Similarity=0.203 Sum_probs=56.1
Q ss_pred CCCCHHHHH-HHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHH---hHhcCCHHHHHHHHHhc----CCCHHH
Q 007329 495 LKPNSVTLV-SILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDM---YVRCGRMKPAWNQFNSN----ERDVSA 566 (608)
Q Consensus 495 ~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~---~~~~g~~~~A~~~~~~~----~~~~~~ 566 (608)
..|+..|+. .++.-+.+.|-.+.|..++..+... +.|....|..+|.. ...+| +.-+.++++.+ ..|+..
T Consensus 455 ~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~l 532 (568)
T KOG2396|consen 455 IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSDL 532 (568)
T ss_pred cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChHH
Confidence 445554443 4455556666677777777766654 23355555555543 22233 55666666666 556667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007329 567 WNILLTGYAERGQGALAEEFFRKMID 592 (608)
Q Consensus 567 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 592 (608)
|-..+.--...|..+.+-.++.+..+
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHHH
Confidence 76666666677777777766666544
No 483
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=31.37 E-value=3.5e+02 Score=23.52 Aligned_cols=98 Identities=8% Similarity=0.068 Sum_probs=55.1
Q ss_pred HHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCC--
Q 007329 454 LEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVA-- 531 (608)
Q Consensus 454 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-- 531 (608)
..+.++.++...+.|.....+-++.-+.+++.+.+- ..+=.+++..|-+..++.++.++++.+.+..+.
T Consensus 96 ~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~L---------GRiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft 166 (233)
T PF14669_consen 96 EALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLL---------GRIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFT 166 (233)
T ss_pred HHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhh---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 344444444444556655555555544444322221 112234556677777888888888877655332
Q ss_pred ------------CCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 532 ------------FDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 532 ------------p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
+--.+.|.-...+.+.|.+|.|..++++-
T Consensus 167 ~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLres 207 (233)
T PF14669_consen 167 SLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRES 207 (233)
T ss_pred hccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhcc
Confidence 22234555666677777777777777654
No 484
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=30.81 E-value=6.5e+02 Score=27.28 Aligned_cols=100 Identities=12% Similarity=0.074 Sum_probs=56.6
Q ss_pred hhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHc
Q 007329 177 FDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFD 256 (608)
Q Consensus 177 ~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 256 (608)
.++..+.+....+..|+..+......+++.. .|++..+..+++++...|- ...+.. .+..++.
T Consensus 180 ~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~--g~It~e-------------~V~~lLG 242 (709)
T PRK08691 180 AQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGS--GKVAEN-------------DVRQMIG 242 (709)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcC--CCcCHH-------------HHHHHHc
Confidence 3455556665555544777777776666554 5888888888877665431 111111 1111111
Q ss_pred cCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 007329 257 GMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPD 297 (608)
Q Consensus 257 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 297 (608)
. .+......++..+. .++...++.++++|...|+.+.
T Consensus 243 ~---~d~~~If~LldAL~-~~d~~~al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 243 A---VDKQYLYELLTGII-NQDGAALLAKAQEMAACAVGFD 279 (709)
T ss_pred c---cCHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCHH
Confidence 1 12233444555444 3778888888888888777544
No 485
>PRK07914 hypothetical protein; Reviewed
Probab=30.41 E-value=3.3e+02 Score=26.13 Aligned_cols=25 Identities=24% Similarity=0.028 Sum_probs=17.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 576 ERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 576 ~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
-.|+..+|..+++++.+.|..|-.+
T Consensus 207 ~~g~~~~A~~~l~~L~~~ge~p~~i 231 (320)
T PRK07914 207 VAGDVAGAAEALRWAMMRGEPHVVL 231 (320)
T ss_pred HCCCHHHHHHHHHHHHHCCCchHHH
Confidence 3567777777777777777666555
No 486
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.89 E-value=3.8e+02 Score=23.44 Aligned_cols=57 Identities=9% Similarity=-0.035 Sum_probs=42.5
Q ss_pred HHHHHHHhcCCHHHHHHHHccCCCCCHhH--HHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 007329 237 ALITMYVKCGDLVRARLVFDGMPKRDRIS--WNAMISGYFENGEYMKGLMLFIMMREVL 293 (608)
Q Consensus 237 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~ 293 (608)
.|.+.....|.+|+|+.+++....++-.. ...-.+.+...|+-++|..-|.+....+
T Consensus 131 RLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 131 RLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 45666778889999999998887764332 3444567888888888888888887764
No 487
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=29.64 E-value=29 Score=22.43 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=15.9
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCc
Q 007329 174 AGFFDEALSLYQRMFWVGGVKPDV 197 (608)
Q Consensus 174 ~g~~~~a~~~~~~m~~~~~~~p~~ 197 (608)
.-+++.|+..|..+...|.++|+.
T Consensus 26 ~Wd~~~A~~~F~~l~~~~~IP~eA 49 (51)
T PF03943_consen 26 NWDYERALQNFEELKAQGKIPPEA 49 (51)
T ss_dssp TT-CCHHHHHHHHCCCTT-S-CCC
T ss_pred CCCHHHHHHHHHHHHHcCCCChHh
Confidence 446788888888888777677764
No 488
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=29.50 E-value=4.3e+02 Score=25.53 Aligned_cols=75 Identities=17% Similarity=0.121 Sum_probs=42.4
Q ss_pred HHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc---CCC----HHHH------------HHHHHHHHhcCCHHHH
Q 007329 523 AHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN---ERD----VSAW------------NILLTGYAERGQGALA 583 (608)
Q Consensus 523 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~----~~~~------------~~l~~~~~~~g~~~~A 583 (608)
++..+.|++.+......|...+. |+...+..-+++. .+| .... -.++ -+...|+...|
T Consensus 151 ~~~~~~~l~i~~~a~~~L~~~~~--~nl~~i~~Ei~KL~l~~~~~~I~~~~V~~~v~~~~~~~~f~l~-dail~g~~~~a 227 (334)
T COG1466 151 KRAKELGLKIDQEAIQLLLEALG--GNLLAIAQEIEKLALYAGDKEITLEDVEEVVSDVAEFNIFDLA-DALLKGDVKKA 227 (334)
T ss_pred HHHHHcCCCCCHHHHHHHHHHhC--CcHHHHHHHHHHHHHhCCCCcCCHHHHHHHHhccccCCHHHHH-HHHHCCCHHHH
Confidence 34445555555555555555444 5555555555444 111 1100 1111 23457889999
Q ss_pred HHHHHHHHHcCCCCCch
Q 007329 584 EEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 584 ~~~~~~m~~~g~~p~~~ 600 (608)
..+++++...|..|=.+
T Consensus 228 ~~~l~~L~~~ge~p~~i 244 (334)
T COG1466 228 LRLLRDLLLEGEEPLKL 244 (334)
T ss_pred HHHHHHHHHcCCcHHHH
Confidence 99999998888887666
No 489
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=29.42 E-value=4.4e+02 Score=25.29 Aligned_cols=51 Identities=22% Similarity=0.167 Sum_probs=24.4
Q ss_pred hCCCchHHHHHHHHhH----hCCCCCHHHHHH--HHHHHhccCcHHHHHHHHHHHHH
Q 007329 477 LNNRSFEALIFFRKMM----LNLKPNSVTLVS--ILSACARIGALMCGKEIHAHALR 527 (608)
Q Consensus 477 ~~~~~~~A~~~~~~m~----~~~~p~~~~~~~--ll~~~~~~~~~~~a~~~~~~~~~ 527 (608)
+.++.++|+++++++. ..-.|+.+.|.. ....+...|+..++.+.+....+
T Consensus 87 ~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 87 QISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3344555555555554 123344444432 23334445666666666555554
No 490
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=29.28 E-value=1.2e+02 Score=23.56 Aligned_cols=46 Identities=11% Similarity=-0.006 Sum_probs=29.1
Q ss_pred HHHHHHhCCChHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccCCc
Q 007329 66 RLNELCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGY 111 (608)
Q Consensus 66 ll~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~ 111 (608)
++..+...+..-.|-++++.+.+.+...+..|....|+.+...|-.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 4455555566666777777777666666666666666666655544
No 491
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=29.12 E-value=1.3e+02 Score=26.39 Aligned_cols=27 Identities=15% Similarity=0.169 Sum_probs=17.9
Q ss_pred hHHHHHHHHhCCChHHHHHHHHHHhhc
Q 007329 63 PNSRLNELCLNGSLEQALKYLDSMQEL 89 (608)
Q Consensus 63 ~~~ll~~~~~~~~~~~A~~~~~~~~~~ 89 (608)
.+.+++.+.-+|+++.|-+.|.-+.+.
T Consensus 44 L~~lLh~~llr~d~~rA~Raf~lLiR~ 70 (199)
T PF04090_consen 44 LTDLLHLCLLRGDWDRAYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHcC
Confidence 456666666677777777777766653
No 492
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=29.04 E-value=4.4e+02 Score=23.91 Aligned_cols=59 Identities=7% Similarity=-0.010 Sum_probs=36.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHh-hcCChhhHHHHHHHHHH
Q 007329 268 AMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASE-LVGDEKLGREVHGYVIK 326 (608)
Q Consensus 268 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~ 326 (608)
.+++..-+.|+++++.+.++++...+...+..--+.+-.+|- ..|....+.+++..+..
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 356667778888888888888888877777666666655553 23444555555555443
No 493
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=28.90 E-value=2.4e+02 Score=20.74 Aligned_cols=41 Identities=20% Similarity=0.142 Sum_probs=26.8
Q ss_pred HHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 520 EIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 520 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
++|+-....|+..|+.+|..+++.+.-.=-.+...++++.+
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 66666666777777777777776665555555556666555
No 494
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=28.78 E-value=7.2e+02 Score=26.28 Aligned_cols=60 Identities=3% Similarity=-0.013 Sum_probs=32.5
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHccCCCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 007329 231 DVDVVNALITMYVKCGDLVRARLVFDGMPKRD-RISWNAMISGYFENGEYMKGLMLFIMMREV 292 (608)
Q Consensus 231 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 292 (608)
....+..|+..+. .=+.+.-.++++++.. . ...+..++++....|-.....-+.+.+...
T Consensus 309 ~~~~f~~lv~~lR-~~~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~ 369 (574)
T smart00638 309 AAAKFLRLVRLLR-TLSEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNK 369 (574)
T ss_pred hHHHHHHHHHHHH-hCCHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence 3445555555543 3344555555555543 2 456666777777776655555555544443
No 495
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=28.23 E-value=2.8e+02 Score=21.32 Aligned_cols=60 Identities=10% Similarity=0.020 Sum_probs=29.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHccCCCCC--HhHHHHHHHHHHhcC--ChhHHHHHHHHHHHCCCC
Q 007329 236 NALITMYVKCGDLVRARLVFDGMPKRD--RISWNAMISGYFENG--EYMKGLMLFIMMREVLVD 295 (608)
Q Consensus 236 ~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~ 295 (608)
..++.-|...|+.++|...+.++..++ ......++......+ .-+....++..+...+..
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~ 69 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLPSQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLI 69 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-GGGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCC
Confidence 345666777788888888888775541 112233333333331 123344555555555443
No 496
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.00 E-value=9.8e+02 Score=27.58 Aligned_cols=59 Identities=12% Similarity=-0.037 Sum_probs=29.6
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCC---CCchhHHHHHHHHhHhcCCHHHHHHHHccC
Q 007329 402 IASVLSACACLGNLDLGIKLHQLAMRTGL---ISYIIIANTLIDMYSKCKCIDKALEVFHQI 460 (608)
Q Consensus 402 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 460 (608)
|..+++.+-+.+..+.+.++-..+++.-. +.-..+++.+.+-....|.+.+|.+.+-..
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~n 1047 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRN 1047 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcC
Confidence 44555555556666666665555444211 111234445555555556666665555443
No 497
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=27.60 E-value=7.8e+02 Score=28.58 Aligned_cols=151 Identities=9% Similarity=0.019 Sum_probs=94.1
Q ss_pred HHHccCChHHHHH------HHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCC---C--------CCcccHHH
Q 007329 408 ACACLGNLDLGIK------LHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIP---D--------KNVISWTS 470 (608)
Q Consensus 408 ~~~~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~--------~~~~~~~~ 470 (608)
.....|.+..+.+ ++......-.+.....|..|...+.+.|+.++|...=.+.. + .+...|..
T Consensus 941 ~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~n 1020 (1236)
T KOG1839|consen 941 EALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGN 1020 (1236)
T ss_pred hhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhH
Confidence 3444556665655 44433322235556778888889999999999988766543 1 12345666
Q ss_pred HHHHHHhCCCchHHHHHHHHhH------hC-CCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHh-----CCC--CCcc
Q 007329 471 IILGLRLNNRSFEALIFFRKMM------LN-LKP-NSVTLVSILSACARIGALMCGKEIHAHALRI-----GVA--FDGF 535 (608)
Q Consensus 471 l~~~~~~~~~~~~A~~~~~~m~------~~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~--p~~~ 535 (608)
+.......++...|+..+.+.. .+ ..| ...+++.+-..+...++++.|.++++.+.+. |.+ ....
T Consensus 1021 lal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~ 1100 (1236)
T KOG1839|consen 1021 LALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETAL 1100 (1236)
T ss_pred HHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhh
Confidence 6666666678888887777765 11 233 3444444444445558889999998887743 211 2455
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHH
Q 007329 536 LPNALLDMYVRCGRMKPAWNQFN 558 (608)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~~~~~ 558 (608)
++..+.+.+...+++..|....+
T Consensus 1101 ~~~~~a~l~~s~~dfr~al~~ek 1123 (1236)
T KOG1839|consen 1101 SYHALARLFESMKDFRNALEHEK 1123 (1236)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHh
Confidence 66777777777777777655543
No 498
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.43 E-value=5.5e+02 Score=24.52 Aligned_cols=29 Identities=14% Similarity=0.200 Sum_probs=17.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 007329 163 SWNVLIGGYAKAGFFDEALSLYQRMFWVG 191 (608)
Q Consensus 163 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 191 (608)
-|..++.+|+...-.++|+..+++..+.|
T Consensus 301 l~kq~l~~~A~d~aieD~i~~L~~~~r~G 329 (365)
T KOG2391|consen 301 LYKQILECYALDLAIEDAIYSLGKSLRDG 329 (365)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHhcC
Confidence 35556666666555566666666665555
No 499
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=27.35 E-value=3.3e+02 Score=26.41 Aligned_cols=24 Identities=13% Similarity=0.012 Sum_probs=14.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCch
Q 007329 577 RGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 577 ~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
.|+...|..+++.+...|..|-.+
T Consensus 224 ~~~~~~a~~~l~~ll~~g~~p~~i 247 (343)
T PRK06585 224 AGDLAAFERALDRALAEGTAPVLI 247 (343)
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHH
Confidence 456666666666666666655544
No 500
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=27.14 E-value=2.9e+02 Score=21.23 Aligned_cols=23 Identities=17% Similarity=0.049 Sum_probs=13.3
Q ss_pred HHHHHHHhCCCchHHHHHHHHhH
Q 007329 470 SIILGLRLNNRSFEALIFFRKMM 492 (608)
Q Consensus 470 ~l~~~~~~~~~~~~A~~~~~~m~ 492 (608)
.++..|...+++++|.+.+.++.
T Consensus 7 ~~l~ey~~~~D~~ea~~~l~~L~ 29 (113)
T smart00544 7 LIIEEYLSSGDTDEAVHCLLELK 29 (113)
T ss_pred HHHHHHHHcCCHHHHHHHHHHhC
Confidence 34455555666666666666553
Done!