Query 007329
Match_columns 608
No_of_seqs 723 out of 3354
Neff 11.4
Searched_HMMs 29240
Date Mon Mar 25 23:02:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007329.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007329hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.9E-41 6.4E-46 357.3 38.1 470 63-574 87-594 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2.4E-41 8.2E-46 356.4 32.9 498 70-600 63-584 (597)
3 4g26_A Pentatricopeptide repea 100.0 5.1E-29 1.7E-33 250.8 17.3 211 179-412 8-223 (501)
4 1w3b_A UDP-N-acetylglucosamine 100.0 6.2E-26 2.1E-30 225.0 37.8 370 169-578 7-387 (388)
5 1w3b_A UDP-N-acetylglucosamine 100.0 4.9E-26 1.7E-30 225.7 37.0 329 265-600 35-373 (388)
6 4g26_A Pentatricopeptide repea 100.0 3.3E-28 1.1E-32 244.9 20.5 184 264-447 27-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 9.5E-24 3.3E-28 217.7 29.0 424 131-560 7-475 (514)
8 2gw1_A Mitochondrial precursor 99.9 1.9E-22 6.5E-27 207.9 33.8 437 64-531 10-481 (514)
9 3fp2_A TPR repeat-containing p 99.9 8.7E-23 3E-27 211.8 27.2 417 162-593 26-491 (537)
10 2y4t_A DNAJ homolog subfamily 99.9 2E-21 6.8E-26 196.7 29.8 208 179-392 10-239 (450)
11 2y4t_A DNAJ homolog subfamily 99.9 6.2E-21 2.1E-25 193.0 31.9 345 230-599 24-414 (450)
12 3fp2_A TPR repeat-containing p 99.9 1.1E-20 3.9E-25 195.8 31.4 423 63-560 28-488 (537)
13 3ieg_A DNAJ homolog subfamily 99.8 1E-17 3.5E-22 163.6 32.8 299 264-600 4-340 (359)
14 3ieg_A DNAJ homolog subfamily 99.8 7.6E-18 2.6E-22 164.6 31.4 274 298-600 3-306 (359)
15 1xi4_A Clathrin heavy chain; a 99.8 9.6E-16 3.3E-20 163.5 47.0 467 63-578 900-1415(1630)
16 3hym_B Cell division cycle pro 99.8 9.6E-18 3.3E-22 161.8 28.6 281 297-581 21-322 (330)
17 1xi4_A Clathrin heavy chain; a 99.8 2.4E-15 8.1E-20 160.5 46.9 350 196-589 984-1341(1630)
18 1b89_A Protein (clathrin heavy 99.8 2.7E-18 9.2E-23 164.4 22.3 220 142-391 15-234 (449)
19 3hym_B Cell division cycle pro 99.8 1.9E-17 6.6E-22 159.7 25.1 268 329-600 18-304 (330)
20 1b89_A Protein (clathrin heavy 99.8 8.3E-19 2.8E-23 167.9 14.6 285 244-559 15-307 (449)
21 2xm6_A Protein corresponding t 99.8 1.8E-15 6.1E-20 154.3 39.8 345 196-560 38-429 (490)
22 2xm6_A Protein corresponding t 99.8 1.5E-15 5.2E-20 154.9 37.3 351 129-531 38-435 (490)
23 2ooe_A Cleavage stimulation fa 99.8 1.5E-15 5.1E-20 156.6 35.4 409 159-598 11-495 (530)
24 1fch_A Peroxisomal targeting s 99.8 1.2E-17 4E-22 164.0 18.7 254 334-591 65-357 (368)
25 1fch_A Peroxisomal targeting s 99.8 1.1E-17 3.9E-22 164.1 17.8 297 242-560 35-356 (368)
26 3mkr_A Coatomer subunit epsilo 99.7 2E-15 6.9E-20 141.8 28.9 251 340-600 6-269 (291)
27 4eqf_A PEX5-related protein; a 99.7 7.1E-17 2.4E-21 158.2 19.0 252 336-589 68-352 (365)
28 2ooe_A Cleavage stimulation fa 99.7 5.9E-15 2E-19 152.1 34.2 415 118-560 2-489 (530)
29 3cv0_A Peroxisome targeting si 99.7 3E-16 1E-20 151.0 20.5 253 337-592 25-314 (327)
30 3mkr_A Coatomer subunit epsilo 99.7 3.3E-16 1.1E-20 147.1 19.3 221 337-564 38-268 (291)
31 4eqf_A PEX5-related protein; a 99.7 4.4E-16 1.5E-20 152.6 20.9 272 262-560 64-353 (365)
32 3cv0_A Peroxisome targeting si 99.7 6E-16 2.1E-20 148.9 19.8 272 264-560 22-312 (327)
33 3spa_A Mtrpol, DNA-directed RN 99.7 1.8E-17 6.1E-22 171.3 7.5 148 129-277 126-286 (1134)
34 3spa_A Mtrpol, DNA-directed RN 99.7 3E-17 1E-21 169.7 7.9 147 333-479 127-286 (1134)
35 4g1t_A Interferon-induced prot 99.7 3.4E-14 1.2E-18 144.4 27.8 367 196-594 50-460 (472)
36 4g1t_A Interferon-induced prot 99.7 5.9E-14 2E-18 142.6 29.0 371 160-560 50-456 (472)
37 3uq3_A Heat shock protein STI1 99.6 7.9E-15 2.7E-19 135.7 19.6 235 365-607 6-256 (258)
38 3e4b_A ALGK; tetratricopeptide 99.6 8.6E-13 3E-17 132.3 27.9 366 207-593 13-421 (452)
39 2pl2_A Hypothetical conserved 99.6 6.2E-14 2.1E-18 125.7 16.8 204 364-591 5-212 (217)
40 3e4b_A ALGK; tetratricopeptide 99.6 5.9E-13 2E-17 133.5 25.1 182 102-293 10-209 (452)
41 3u4t_A TPR repeat-containing p 99.6 8.9E-13 3E-17 123.0 23.6 224 336-560 6-247 (272)
42 2ho1_A Type 4 fimbrial biogene 99.5 1E-12 3.5E-17 121.0 22.7 201 364-600 37-243 (252)
43 3uq3_A Heat shock protein STI1 99.5 3.5E-13 1.2E-17 124.5 19.2 225 265-560 7-233 (258)
44 3u4t_A TPR repeat-containing p 99.5 8E-13 2.7E-17 123.3 21.1 231 366-600 5-255 (272)
45 2pl2_A Hypothetical conserved 99.5 5.4E-13 1.8E-17 119.5 18.8 196 330-560 2-211 (217)
46 2vq2_A PILW, putative fimbrial 99.5 2.1E-12 7.3E-17 116.4 22.9 196 401-600 10-216 (225)
47 1xnf_A Lipoprotein NLPI; TPR, 99.5 8E-14 2.7E-18 130.3 13.4 219 366-587 45-269 (275)
48 2q7f_A YRRB protein; TPR, prot 99.5 4.3E-13 1.5E-17 122.7 16.9 199 366-600 25-227 (243)
49 1ouv_A Conserved hypothetical 99.5 1E-11 3.4E-16 115.9 26.1 225 363-600 5-256 (273)
50 2ho1_A Type 4 fimbrial biogene 99.5 3.6E-12 1.2E-16 117.3 22.7 196 333-529 37-239 (252)
51 2h6f_A Protein farnesyltransfe 99.5 1.9E-12 6.5E-17 125.7 21.2 232 364-600 97-353 (382)
52 2q7f_A YRRB protein; TPR, prot 99.5 8E-13 2.7E-17 120.9 17.2 198 330-529 20-223 (243)
53 2vq2_A PILW, putative fimbrial 99.5 4.4E-12 1.5E-16 114.3 21.4 195 364-560 8-208 (225)
54 1xnf_A Lipoprotein NLPI; TPR, 99.5 1.6E-12 5.3E-17 121.5 18.8 213 275-492 17-242 (275)
55 4e6h_A MRNA 3'-END-processing 99.5 4.1E-10 1.4E-14 116.8 36.1 412 159-599 64-574 (679)
56 3sf4_A G-protein-signaling mod 99.4 1.2E-12 4.1E-17 129.9 15.6 287 262-580 8-363 (406)
57 2h6f_A Protein farnesyltransfe 99.4 1.2E-11 4.1E-16 120.0 21.2 148 263-446 97-246 (382)
58 4a1s_A PINS, partner of inscut 99.4 8.9E-13 3E-17 131.2 12.5 265 300-593 50-372 (411)
59 3vtx_A MAMA; tetratricopeptide 99.4 9.5E-12 3.3E-16 108.3 17.4 165 433-600 4-175 (184)
60 1ouv_A Conserved hypothetical 99.4 7E-11 2.4E-15 110.1 24.1 222 160-429 5-252 (273)
61 4abn_A Tetratricopeptide repea 99.4 9.1E-12 3.1E-16 125.7 17.4 207 381-589 85-317 (474)
62 4e6h_A MRNA 3'-END-processing 99.4 2.2E-09 7.7E-14 111.2 35.4 128 402-529 437-571 (679)
63 3ulq_A Response regulator aspa 99.4 1.6E-11 5.6E-16 120.7 18.8 224 370-593 109-368 (383)
64 3ro2_A PINS homolog, G-protein 99.4 5.3E-12 1.8E-16 121.6 14.9 264 301-593 8-332 (338)
65 4a1s_A PINS, partner of inscut 99.4 3E-12 1E-16 127.4 13.4 270 263-560 48-369 (411)
66 3sf4_A G-protein-signaling mod 99.4 7.4E-12 2.5E-16 124.2 15.5 260 165-426 13-334 (406)
67 2ond_A Cleavage stimulation fa 99.4 1.7E-10 5.8E-15 109.5 23.5 214 381-598 33-273 (308)
68 3ro2_A PINS homolog, G-protein 99.3 4.1E-12 1.4E-16 122.3 12.4 268 265-560 7-329 (338)
69 3vtx_A MAMA; tetratricopeptide 99.3 7.2E-11 2.5E-15 102.6 18.2 161 398-560 4-167 (184)
70 3nf1_A KLC 1, kinesin light ch 99.3 3.6E-12 1.2E-16 121.3 8.6 163 63-225 30-223 (311)
71 3as5_A MAMA; tetratricopeptide 99.3 2.2E-10 7.6E-15 99.4 19.4 164 434-600 8-178 (186)
72 3nf1_A KLC 1, kinesin light ch 99.3 2.6E-12 9E-17 122.3 7.5 228 366-593 29-307 (311)
73 3ulq_A Response regulator aspa 99.3 1.5E-10 5E-15 113.8 18.9 219 339-560 109-365 (383)
74 4abn_A Tetratricopeptide repea 99.3 7.9E-11 2.7E-15 118.8 15.9 208 349-560 84-318 (474)
75 3q15_A PSP28, response regulat 99.3 2.8E-10 9.6E-15 111.6 19.3 223 371-593 108-365 (378)
76 2ond_A Cleavage stimulation fa 99.2 6.5E-10 2.2E-14 105.4 20.7 178 381-560 81-267 (308)
77 4gyw_A UDP-N-acetylglucosamine 99.2 2E-10 6.7E-15 120.6 16.5 158 434-592 9-173 (723)
78 1hz4_A MALT regulatory protein 99.2 1.1E-08 3.6E-13 100.1 26.5 256 271-526 22-320 (373)
79 1hz4_A MALT regulatory protein 99.2 1.7E-08 5.6E-13 98.7 26.5 260 67-326 21-321 (373)
80 3q15_A PSP28, response regulat 99.1 3.7E-09 1.3E-13 103.5 21.4 158 170-327 110-290 (378)
81 4i17_A Hypothetical protein; T 99.1 9.4E-10 3.2E-14 99.3 15.7 195 397-600 5-214 (228)
82 3as5_A MAMA; tetratricopeptide 99.1 9.4E-10 3.2E-14 95.4 14.6 161 366-560 10-170 (186)
83 4gyw_A UDP-N-acetylglucosamine 99.1 1.3E-09 4.3E-14 114.5 16.4 159 400-560 10-171 (723)
84 4i17_A Hypothetical protein; T 99.1 5.6E-09 1.9E-13 94.1 17.9 187 364-560 7-206 (228)
85 2fo7_A Synthetic consensus TPR 99.1 4.9E-09 1.7E-13 85.3 15.8 126 467-593 3-132 (136)
86 3edt_B KLC 2, kinesin light ch 99.1 6.9E-10 2.3E-14 103.7 11.2 195 399-593 43-281 (283)
87 1qqe_A Vesicular transport pro 99.1 2E-09 6.7E-14 101.2 14.0 234 316-592 3-268 (292)
88 3edt_B KLC 2, kinesin light ch 99.0 3E-09 1E-13 99.3 12.1 219 73-291 14-280 (283)
89 2uy1_A Cleavage stimulation fa 99.0 3.2E-07 1.1E-11 92.3 27.2 202 382-592 197-412 (493)
90 3qky_A Outer membrane assembly 98.9 4.3E-08 1.5E-12 90.4 17.5 160 438-600 19-229 (261)
91 3mv2_B Coatomer subunit epsilo 98.9 5.3E-08 1.8E-12 89.4 17.0 175 418-600 85-287 (310)
92 4ga2_A E3 SUMO-protein ligase 98.9 8.1E-09 2.8E-13 85.9 10.6 139 440-579 3-149 (150)
93 3mv2_B Coatomer subunit epsilo 98.9 1E-07 3.5E-12 87.6 18.0 174 383-560 85-279 (310)
94 1qqe_A Vesicular transport pro 98.9 8.8E-08 3E-12 89.8 18.0 129 132-260 79-227 (292)
95 2pzi_A Probable serine/threoni 98.9 2.7E-08 9.1E-13 105.1 15.6 150 375-527 402-562 (681)
96 3urz_A Uncharacterized protein 98.9 1.7E-08 5.9E-13 89.3 11.7 181 401-600 6-191 (208)
97 2r5s_A Uncharacterized protein 98.8 3.4E-08 1.2E-12 84.7 13.1 153 438-592 10-172 (176)
98 2fo7_A Synthetic consensus TPR 98.8 1E-07 3.4E-12 77.3 14.9 57 471-527 75-131 (136)
99 2vsy_A XCC0866; transferase, g 98.8 5.9E-08 2E-12 100.6 16.7 146 413-560 3-154 (568)
100 3qou_A Protein YBBN; thioredox 98.8 1.3E-07 4.6E-12 88.2 17.5 161 398-559 116-280 (287)
101 2yhc_A BAMD, UPF0169 lipoprote 98.8 1.4E-07 4.7E-12 84.6 17.0 183 398-600 3-218 (225)
102 3qky_A Outer membrane assembly 98.8 3.1E-08 1.1E-12 91.3 12.8 181 362-560 13-221 (261)
103 2r5s_A Uncharacterized protein 98.8 7.2E-08 2.5E-12 82.7 13.4 158 402-560 9-170 (176)
104 3urz_A Uncharacterized protein 98.8 8.9E-08 3.1E-12 84.6 14.4 182 367-571 7-197 (208)
105 2uy1_A Cleavage stimulation fa 98.8 1.7E-05 5.8E-10 79.8 32.6 368 73-492 7-411 (493)
106 3qou_A Protein YBBN; thioredox 98.8 6.6E-08 2.2E-12 90.3 13.6 160 431-592 114-283 (287)
107 3dra_A Protein farnesyltransfe 98.8 5.1E-06 1.8E-10 77.1 26.1 218 377-599 46-292 (306)
108 2pzi_A Probable serine/threoni 98.8 7.9E-08 2.7E-12 101.5 15.3 167 344-514 402-583 (681)
109 4ga2_A E3 SUMO-protein ligase 98.7 9.3E-09 3.2E-13 85.5 6.0 126 472-600 4-134 (150)
110 1hh8_A P67PHOX, NCF-2, neutrop 98.7 2.5E-07 8.4E-12 82.1 15.7 124 437-560 9-147 (213)
111 3gyz_A Chaperone protein IPGC; 98.7 1.7E-07 5.8E-12 77.4 12.8 92 501-593 38-133 (151)
112 1hh8_A P67PHOX, NCF-2, neutrop 98.7 4.2E-07 1.4E-11 80.6 15.4 127 467-599 8-154 (213)
113 2ifu_A Gamma-SNAP; membrane fu 98.7 3.1E-07 1.1E-11 86.8 15.3 183 377-560 4-221 (307)
114 2yhc_A BAMD, UPF0169 lipoprote 98.7 7.9E-07 2.7E-11 79.6 16.8 180 364-560 4-210 (225)
115 3gw4_A Uncharacterized protein 98.7 2.3E-07 7.9E-12 81.5 13.0 91 501-591 68-174 (203)
116 4gco_A Protein STI-1; structur 98.7 3.8E-07 1.3E-11 72.9 13.0 98 500-600 14-115 (126)
117 3gyz_A Chaperone protein IPGC; 98.7 3.1E-07 1.1E-11 75.8 12.5 101 464-565 35-138 (151)
118 1a17_A Serine/threonine protei 98.7 5.7E-07 2E-11 76.0 14.6 126 466-592 14-145 (166)
119 2ifu_A Gamma-SNAP; membrane fu 98.6 2.7E-07 9.3E-12 87.1 13.2 152 401-555 78-253 (307)
120 2vsy_A XCC0866; transferase, g 98.6 3.3E-07 1.1E-11 95.0 14.8 152 378-531 3-160 (568)
121 3u3w_A Transcriptional activat 98.6 3.4E-06 1.2E-10 78.9 20.0 153 440-592 81-265 (293)
122 4gco_A Protein STI-1; structur 98.6 6.1E-07 2.1E-11 71.7 12.7 105 467-572 15-123 (126)
123 2qfc_A PLCR protein; TPR, HTH, 98.6 1E-06 3.5E-11 82.6 16.2 121 471-591 121-264 (293)
124 3rjv_A Putative SEL1 repeat pr 98.6 4.3E-06 1.5E-10 73.9 19.4 72 382-460 4-79 (212)
125 3rjv_A Putative SEL1 repeat pr 98.6 1.2E-06 4.2E-11 77.5 15.6 161 362-530 16-199 (212)
126 3dra_A Protein farnesyltransfe 98.6 3.6E-05 1.2E-09 71.4 25.4 219 67-291 39-286 (306)
127 2e2e_A Formate-dependent nitri 98.6 6.8E-07 2.3E-11 76.6 12.3 117 476-593 21-144 (177)
128 2vgx_A Chaperone SYCD; alterna 98.5 2.4E-07 8.1E-12 76.6 8.6 92 468-560 24-115 (148)
129 2lni_A Stress-induced-phosphop 98.5 1.3E-06 4.3E-11 70.5 13.0 113 465-578 16-132 (133)
130 1na0_A Designed protein CTPR3; 98.5 1.8E-06 6.3E-11 68.5 13.8 93 467-560 11-103 (125)
131 2vyi_A SGTA protein; chaperone 98.5 1.5E-06 5.3E-11 69.7 13.0 114 466-580 13-130 (131)
132 1p5q_A FKBP52, FK506-binding p 98.5 1.7E-06 5.7E-11 82.7 14.0 125 466-591 148-292 (336)
133 2fbn_A 70 kDa peptidylprolyl i 98.5 2.9E-07 9.9E-12 80.6 7.6 152 442-594 12-187 (198)
134 3q7a_A Farnesyltransferase alp 98.5 7.1E-05 2.4E-09 70.2 23.8 215 374-592 64-330 (349)
135 3upv_A Heat shock protein STI1 98.4 2.1E-06 7E-11 68.7 11.2 92 501-593 6-101 (126)
136 4f3v_A ESX-1 secretion system 98.4 4.7E-07 1.6E-11 82.0 8.0 121 471-593 108-237 (282)
137 3u3w_A Transcriptional activat 98.4 2.2E-05 7.5E-10 73.4 20.0 160 167-326 81-265 (293)
138 2qfc_A PLCR protein; TPR, HTH, 98.4 1.9E-05 6.6E-10 73.8 19.5 121 440-560 121-263 (293)
139 2c2l_A CHIP, carboxy terminus 98.4 6.9E-07 2.3E-11 83.0 9.3 189 398-593 3-199 (281)
140 4gcn_A Protein STI-1; structur 98.4 3.8E-06 1.3E-10 67.2 12.1 89 504-593 13-112 (127)
141 4f3v_A ESX-1 secretion system 98.4 6.6E-06 2.3E-10 74.5 14.8 135 436-570 104-247 (282)
142 1a17_A Serine/threonine protei 98.4 2.9E-06 9.9E-11 71.5 12.0 121 439-560 18-143 (166)
143 2xcb_A PCRH, regulatory protei 98.4 1.1E-06 3.8E-11 72.0 9.0 93 467-560 20-112 (142)
144 4gcn_A Protein STI-1; structur 98.4 1.4E-06 4.9E-11 69.7 9.2 105 466-570 9-122 (127)
145 3q7a_A Farnesyltransferase alp 98.4 0.00021 7E-09 67.1 24.6 218 69-291 63-330 (349)
146 1na0_A Designed protein CTPR3; 98.3 5E-06 1.7E-10 65.9 11.5 109 437-546 12-123 (125)
147 3q49_B STIP1 homology and U bo 98.3 4.7E-06 1.6E-10 67.6 11.4 93 499-592 9-105 (137)
148 3gw4_A Uncharacterized protein 98.3 1.5E-06 5E-11 76.3 8.9 129 162-290 27-174 (203)
149 3sz7_A HSC70 cochaperone (SGT) 98.3 4.4E-06 1.5E-10 70.4 11.4 95 465-560 11-105 (164)
150 1elw_A TPR1-domain of HOP; HOP 98.3 9.7E-06 3.3E-10 63.4 12.7 90 502-592 7-100 (118)
151 3upv_A Heat shock protein STI1 98.3 1.1E-05 3.7E-10 64.4 13.0 93 467-560 6-98 (126)
152 2vgx_A Chaperone SYCD; alterna 98.3 7.7E-06 2.6E-10 67.4 12.3 95 498-593 20-118 (148)
153 2lni_A Stress-induced-phosphop 98.3 5.1E-06 1.8E-10 66.8 10.9 115 434-549 16-133 (133)
154 1hxi_A PEX5, peroxisome target 98.3 4.3E-06 1.5E-10 66.2 10.0 90 503-593 21-114 (121)
155 2c2l_A CHIP, carboxy terminus 98.3 1E-06 3.5E-11 81.8 7.4 92 299-391 5-99 (281)
156 2vyi_A SGTA protein; chaperone 98.3 5E-06 1.7E-10 66.6 10.7 114 436-550 14-130 (131)
157 2e2e_A Formate-dependent nitri 98.3 1.2E-06 4E-11 75.1 7.1 94 466-560 45-141 (177)
158 2xcb_A PCRH, regulatory protei 98.3 5.4E-06 1.8E-10 67.9 10.5 95 498-593 17-115 (142)
159 2kck_A TPR repeat; tetratricop 98.3 4.6E-06 1.6E-10 64.7 9.6 93 500-593 7-106 (112)
160 1elw_A TPR1-domain of HOP; HOP 98.3 1.4E-05 4.6E-10 62.6 12.4 108 465-573 4-115 (118)
161 1p5q_A FKBP52, FK506-binding p 98.2 5.7E-06 1.9E-10 79.0 11.7 144 399-560 147-291 (336)
162 1elr_A TPR2A-domain of HOP; HO 98.2 6.2E-06 2.1E-10 66.1 10.2 106 467-572 6-120 (131)
163 3sz7_A HSC70 cochaperone (SGT) 98.2 1.6E-05 5.3E-10 66.9 12.9 95 435-529 12-109 (164)
164 3q49_B STIP1 homology and U bo 98.2 1.2E-05 4.3E-10 65.0 11.3 96 464-560 8-103 (137)
165 2dba_A Smooth muscle cell asso 98.2 3E-05 1E-09 63.6 13.6 94 465-560 28-125 (148)
166 3dss_A Geranylgeranyl transfer 98.2 0.00039 1.3E-08 64.9 22.1 218 376-600 41-309 (331)
167 1hxi_A PEX5, peroxisome target 98.2 9.9E-06 3.4E-10 64.0 9.7 93 467-560 19-111 (121)
168 4b4t_Q 26S proteasome regulato 98.1 6.1E-05 2.1E-09 74.9 16.9 190 371-560 11-242 (434)
169 3ro3_A PINS homolog, G-protein 98.1 1.7E-05 5.9E-10 66.2 10.8 127 467-593 11-158 (164)
170 2fbn_A 70 kDa peptidylprolyl i 98.1 2E-06 7E-11 75.1 4.8 94 466-560 89-183 (198)
171 2xev_A YBGF; tetratricopeptide 98.1 5.2E-05 1.8E-09 60.5 12.8 90 471-560 8-102 (129)
172 2dba_A Smooth muscle cell asso 98.1 4.2E-05 1.4E-09 62.7 12.5 103 496-600 25-133 (148)
173 1elr_A TPR2A-domain of HOP; HO 98.1 2.7E-05 9.4E-10 62.1 10.8 95 499-594 4-109 (131)
174 2xev_A YBGF; tetratricopeptide 98.1 8.9E-05 3E-09 59.1 13.3 95 503-600 6-110 (129)
175 2kck_A TPR repeat; tetratricop 98.0 2.9E-05 9.9E-10 60.0 9.8 95 466-560 7-103 (112)
176 2if4_A ATFKBP42; FKBP-like, al 98.0 1.1E-05 3.8E-10 77.0 8.6 97 501-600 232-333 (338)
177 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 2.4E-05 8.4E-10 78.1 11.4 119 435-554 269-405 (457)
178 1wao_1 Serine/threonine protei 98.0 8.1E-06 2.8E-10 81.9 7.3 113 475-588 16-134 (477)
179 3dss_A Geranylgeranyl transfer 98.0 0.00039 1.3E-08 64.9 17.9 186 411-600 41-272 (331)
180 1wao_1 Serine/threonine protei 98.0 3.9E-05 1.3E-09 77.0 11.9 115 443-558 15-134 (477)
181 3rkv_A Putative peptidylprolyl 98.0 4.8E-05 1.7E-09 63.7 10.6 93 467-560 13-123 (162)
182 1ihg_A Cyclophilin 40; ppiase 98.0 3.7E-05 1.3E-09 74.2 10.8 87 498-585 272-362 (370)
183 4b4t_Q 26S proteasome regulato 97.9 9.8E-05 3.4E-09 73.3 14.1 185 340-524 11-241 (434)
184 3k9i_A BH0479 protein; putativ 97.9 1E-05 3.5E-10 63.6 5.2 82 478-560 3-87 (117)
185 3rkv_A Putative peptidylprolyl 97.9 7.3E-05 2.5E-09 62.6 10.6 95 436-530 13-128 (162)
186 3k9i_A BH0479 protein; putativ 97.9 2.4E-05 8.1E-10 61.4 7.0 82 512-593 3-90 (117)
187 3n71_A Histone lysine methyltr 97.8 0.00014 4.7E-09 72.5 12.9 119 475-593 319-464 (490)
188 1klx_A Cysteine rich protein B 97.8 0.00055 1.9E-08 55.2 13.7 110 479-595 9-128 (138)
189 2hr2_A Hypothetical protein; a 97.8 0.00014 4.7E-09 59.4 9.5 58 536-593 59-131 (159)
190 1ihg_A Cyclophilin 40; ppiase 97.8 9.1E-05 3.1E-09 71.5 10.1 140 399-555 223-362 (370)
191 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 0.00015 5.1E-09 72.4 12.0 121 399-519 268-405 (457)
192 2hr2_A Hypothetical protein; a 97.8 0.00015 5.2E-09 59.1 9.5 91 468-560 14-128 (159)
193 2kat_A Uncharacterized protein 97.7 0.00024 8.1E-09 55.3 10.4 78 482-560 2-79 (115)
194 3ro3_A PINS homolog, G-protein 97.7 0.00013 4.5E-09 60.6 8.4 126 63-188 12-156 (164)
195 2l6j_A TPR repeat-containing p 97.6 3.4E-05 1.2E-09 59.6 3.7 85 500-585 5-99 (111)
196 2kat_A Uncharacterized protein 97.6 0.00029 9.9E-09 54.8 8.9 77 516-593 2-82 (115)
197 2if4_A ATFKBP42; FKBP-like, al 97.6 9.5E-05 3.3E-09 70.5 7.2 146 399-560 179-325 (338)
198 2l6j_A TPR repeat-containing p 97.6 3.8E-05 1.3E-09 59.3 3.7 95 466-560 5-104 (111)
199 1dce_A Protein (RAB geranylger 97.5 0.0019 6.4E-08 66.1 16.1 149 449-600 44-226 (567)
200 1dce_A Protein (RAB geranylger 97.5 0.0011 3.8E-08 67.7 13.9 132 450-582 89-244 (567)
201 1zu2_A Mitochondrial import re 97.5 0.00018 6E-09 58.6 6.2 48 551-600 63-125 (158)
202 3ma5_A Tetratricopeptide repea 97.5 0.00076 2.6E-08 50.8 9.4 63 497-560 5-67 (100)
203 1zu2_A Mitochondrial import re 97.5 0.00026 8.7E-09 57.6 6.9 111 476-593 13-147 (158)
204 1na3_A Designed protein CTPR2; 97.4 0.00095 3.3E-08 48.9 9.7 74 501-575 11-88 (91)
205 3n71_A Histone lysine methyltr 97.4 0.00055 1.9E-08 68.2 10.4 131 374-528 319-464 (490)
206 3lvg_A Clathrin heavy chain 1; 97.4 2.5E-05 8.5E-10 74.4 0.3 236 131-385 55-325 (624)
207 1na3_A Designed protein CTPR2; 97.4 0.0012 4.1E-08 48.4 9.4 82 466-548 10-91 (91)
208 3lvg_A Clathrin heavy chain 1; 97.3 0.0012 4.2E-08 63.1 10.0 315 159-521 197-534 (624)
209 1klx_A Cysteine rich protein B 97.2 0.0043 1.5E-07 49.9 11.2 110 175-293 9-127 (138)
210 3ma5_A Tetratricopeptide repea 97.1 0.0016 5.3E-08 49.0 7.7 61 533-593 6-70 (100)
211 3qww_A SET and MYND domain-con 96.9 0.0049 1.7E-07 60.2 11.2 57 536-592 342-410 (433)
212 3mkq_A Coatomer beta'-subunit; 96.9 0.021 7.1E-07 61.7 16.9 155 169-359 607-762 (814)
213 3ly7_A Transcriptional activat 96.7 0.062 2.1E-06 50.4 16.3 61 533-593 276-339 (372)
214 3qwp_A SET and MYND domain-con 96.7 0.014 4.7E-07 57.2 12.2 55 472-526 294-356 (429)
215 3mkq_A Coatomer beta'-subunit; 96.7 0.07 2.4E-06 57.5 18.9 156 67-258 606-762 (814)
216 2kc7_A BFR218_protein; tetratr 96.6 0.0071 2.4E-07 45.0 7.7 57 473-529 8-65 (99)
217 3qww_A SET and MYND domain-con 96.5 0.0081 2.8E-07 58.7 8.8 83 478-560 311-408 (433)
218 3qwp_A SET and MYND domain-con 96.4 0.023 7.7E-07 55.7 11.6 86 441-526 294-398 (429)
219 1pc2_A Mitochondria fission pr 96.3 0.02 6.7E-07 46.0 8.7 77 484-560 17-97 (152)
220 2kc7_A BFR218_protein; tetratr 96.3 0.015 5E-07 43.3 7.7 79 505-592 6-89 (99)
221 3bee_A Putative YFRE protein; 96.2 0.019 6.5E-07 42.1 7.6 29 564-592 43-71 (93)
222 3bee_A Putative YFRE protein; 96.1 0.033 1.1E-06 40.8 8.6 64 496-560 3-69 (93)
223 3ly7_A Transcriptional activat 96.1 0.088 3E-06 49.4 13.1 73 494-568 272-347 (372)
224 4ady_A RPN2, 26S proteasome re 95.9 2.3 7.9E-05 45.3 26.9 263 307-574 383-671 (963)
225 3mkq_B Coatomer subunit alpha; 95.8 0.18 6.2E-06 41.5 12.2 103 242-361 15-117 (177)
226 1wy6_A Hypothetical protein ST 95.7 0.29 1E-05 37.8 11.9 140 375-531 18-157 (172)
227 3u64_A Protein TP_0956; tetrat 95.7 0.38 1.3E-05 43.2 14.7 114 446-560 133-266 (301)
228 1pc2_A Mitochondria fission pr 95.2 0.16 5.4E-06 40.8 9.6 85 513-600 12-105 (152)
229 3mkq_B Coatomer subunit alpha; 95.1 0.8 2.7E-05 37.7 13.7 105 137-259 12-116 (177)
230 2v5f_A Prolyl 4-hydroxylase su 94.9 0.14 4.9E-06 38.3 8.4 63 498-560 4-72 (104)
231 4h7y_A Dual specificity protei 94.9 0.42 1.4E-05 37.8 10.9 98 462-560 10-120 (161)
232 2v5f_A Prolyl 4-hydroxylase su 94.8 0.21 7.3E-06 37.3 9.3 64 468-531 8-78 (104)
233 1wy6_A Hypothetical protein ST 94.7 0.95 3.2E-05 35.0 12.1 140 274-431 18-157 (172)
234 3u64_A Protein TP_0956; tetrat 94.4 0.1 3.4E-06 46.9 7.3 87 514-600 178-278 (301)
235 4h7y_A Dual specificity protei 94.3 0.33 1.1E-05 38.4 9.1 104 496-600 10-130 (161)
236 4ady_A RPN2, 26S proteasome re 94.1 7.3 0.00025 41.6 30.6 249 342-592 383-657 (963)
237 1nzn_A CGI-135 protein, fissio 93.6 0.64 2.2E-05 35.7 9.4 81 517-600 19-108 (126)
238 4b4t_P 26S proteasome regulato 92.6 3.1 0.00011 40.7 15.4 149 174-324 29-203 (445)
239 2wpv_A GET4, UPF0363 protein Y 92.0 5 0.00017 36.7 14.8 145 436-591 35-215 (312)
240 2wpv_A GET4, UPF0363 protein Y 91.7 7.7 0.00026 35.4 18.6 168 132-326 35-216 (312)
241 1nzn_A CGI-135 protein, fissio 91.4 0.57 1.9E-05 36.1 6.6 83 481-563 17-106 (126)
242 3lpz_A GET4 (YOR164C homolog); 90.8 10 0.00034 35.0 21.1 168 132-326 37-215 (336)
243 4gns_B Protein CSD3, chitin bi 90.4 4.9 0.00017 41.9 14.6 49 511-560 349-397 (754)
244 4gns_B Protein CSD3, chitin bi 89.9 5 0.00017 41.8 14.2 50 541-590 344-397 (754)
245 2p58_C Putative type III secre 89.8 2.3 7.9E-05 30.6 7.9 86 110-201 22-107 (116)
246 2uwj_G Type III export protein 89.4 2.2 7.5E-05 30.7 7.5 86 110-201 21-106 (115)
247 3ffl_A Anaphase-promoting comp 88.6 5.7 0.0002 32.1 10.6 21 540-560 128-148 (167)
248 4fhn_B Nucleoporin NUP120; pro 88.6 3.3 0.00011 46.2 12.7 52 405-461 818-869 (1139)
249 1zbp_A Hypothetical protein VP 88.3 2.9 9.9E-05 36.9 9.5 115 472-593 4-129 (273)
250 2ff4_A Probable regulatory pro 87.9 2.3 7.8E-05 40.8 9.6 70 469-538 175-249 (388)
251 4fhn_B Nucleoporin NUP120; pro 87.6 7.3 0.00025 43.5 14.6 53 337-390 816-868 (1139)
252 1v54_E Cytochrome C oxidase po 87.4 3.2 0.00011 30.2 7.4 63 75-138 25-87 (109)
253 3o48_A Mitochondria fission 1 86.9 3 0.0001 32.2 7.7 67 494-560 35-104 (134)
254 2ff4_A Probable regulatory pro 86.8 2.3 8E-05 40.7 8.9 63 538-600 175-246 (388)
255 1y8m_A FIS1; mitochondria, unk 86.1 6.8 0.00023 30.7 9.3 66 495-560 35-103 (144)
256 3txn_A 26S proteasome regulato 85.8 11 0.00037 35.9 12.7 26 400-425 20-45 (394)
257 3lpz_A GET4 (YOR164C homolog); 85.6 22 0.00076 32.7 22.2 167 234-426 37-214 (336)
258 3o48_A Mitochondria fission 1 84.5 8.5 0.00029 29.7 9.1 70 529-600 35-112 (134)
259 1v54_E Cytochrome C oxidase po 84.4 6.7 0.00023 28.5 7.8 60 382-442 28-87 (109)
260 2uwj_G Type III export protein 82.6 12 0.0004 27.1 9.2 79 211-293 20-98 (115)
261 3ffl_A Anaphase-promoting comp 82.4 16 0.00054 29.6 10.3 122 135-269 25-161 (167)
262 2p58_C Putative type III secre 82.3 12 0.00041 27.1 9.4 79 211-293 21-99 (116)
263 1qsa_A Protein (soluble lytic 80.3 54 0.0019 33.4 34.6 112 378-492 228-346 (618)
264 3eiq_C Programmed cell death p 80.0 39 0.0013 31.5 14.0 70 236-305 221-295 (358)
265 1wdy_A 2-5A-dependent ribonucl 79.8 32 0.0011 30.5 13.4 15 65-79 7-21 (285)
266 2qx5_A Nucleoporin NIC96; mRNA 79.7 51 0.0017 33.8 15.6 20 241-260 452-471 (661)
267 1y8m_A FIS1; mitochondria, unk 79.2 21 0.00072 28.0 10.6 70 529-600 34-111 (144)
268 2y69_E Cytochrome C oxidase su 79.2 9.2 0.00031 29.5 7.4 75 63-138 54-130 (152)
269 4b4t_P 26S proteasome regulato 78.8 50 0.0017 32.1 19.5 92 469-560 141-244 (445)
270 2y69_E Cytochrome C oxidase su 76.4 15 0.00051 28.4 7.8 60 382-442 71-130 (152)
271 1wdy_A 2-5A-dependent ribonucl 75.1 39 0.0013 29.9 12.5 48 310-357 191-240 (285)
272 4b4t_R RPN7, 26S proteasome re 74.3 37 0.0013 32.8 12.6 94 467-560 133-234 (429)
273 3ltm_A Alpha-REP4; protein eng 70.9 46 0.0016 28.0 18.4 60 230-290 124-183 (211)
274 1qsa_A Protein (soluble lytic 69.6 1E+02 0.0035 31.4 39.8 310 68-392 14-347 (618)
275 2zu6_B Programmed cell death p 69.2 23 0.00079 32.3 9.1 65 236-300 170-239 (307)
276 3kea_A K1L; tropism, ANK repea 67.1 53 0.0018 29.4 11.4 12 344-355 203-214 (285)
277 3eiq_C Programmed cell death p 66.8 83 0.0028 29.3 12.8 62 468-531 220-285 (358)
278 1n11_A Ankyrin; clathrin, BAND 66.3 78 0.0027 30.4 13.2 111 66-185 17-134 (437)
279 1zbp_A Hypothetical protein VP 65.0 21 0.00072 31.5 7.5 49 444-492 7-58 (273)
280 3mv2_A Coatomer subunit alpha; 64.8 46 0.0016 30.3 9.8 42 566-607 209-253 (325)
281 4g8k_A 2-5A-dependent ribonucl 64.3 81 0.0028 28.9 12.4 27 64-94 26-52 (337)
282 4b4t_R RPN7, 26S proteasome re 63.1 44 0.0015 32.3 10.4 58 132-189 133-196 (429)
283 1k1a_A B-cell lymphoma 3-encod 62.6 73 0.0025 27.2 11.4 18 171-188 16-33 (241)
284 1k1a_A B-cell lymphoma 3-encod 59.5 83 0.0028 26.8 11.6 18 137-154 13-30 (241)
285 4b4t_S RPN3, 26S proteasome re 59.2 56 0.0019 32.2 10.0 61 130-190 231-299 (523)
286 3esl_A Checkpoint serine/threo 57.5 71 0.0024 26.8 9.0 55 175-230 93-148 (202)
287 2d2s_A Exocyst complex compone 56.8 37 0.0013 29.5 7.7 26 533-558 90-115 (235)
288 2nsz_A Programmed cell death p 56.0 67 0.0023 24.7 9.2 65 236-300 11-80 (129)
289 2qx5_A Nucleoporin NIC96; mRNA 55.9 1.9E+02 0.0063 29.7 18.1 44 63-107 155-198 (661)
290 3esl_A Checkpoint serine/threo 55.7 91 0.0031 26.1 10.0 57 378-434 93-150 (202)
291 3hra_A Ankyrin repeat family p 55.7 62 0.0021 26.7 9.1 179 67-255 9-198 (201)
292 3jxi_A Vanilloid receptor-rela 55.6 18 0.00061 31.9 5.9 94 65-158 7-118 (260)
293 2zu6_B Programmed cell death p 55.4 99 0.0034 28.1 10.6 26 236-261 7-32 (307)
294 3ltj_A Alpharep-4; protein eng 54.5 91 0.0031 25.8 19.8 50 230-279 26-75 (201)
295 3txn_A 26S proteasome regulato 54.5 1.5E+02 0.005 28.1 21.9 57 370-426 105-166 (394)
296 3jxi_A Vanilloid receptor-rela 53.9 58 0.002 28.4 9.0 54 170-224 11-73 (260)
297 2ion_A PDCD4, programmed cell 53.3 61 0.0021 25.8 7.8 66 235-300 12-82 (152)
298 3eu9_A Huntingtin-interacting 52.2 97 0.0033 26.2 10.2 14 342-355 216-229 (240)
299 2ion_A PDCD4, programmed cell 49.9 83 0.0028 25.0 8.1 65 337-401 13-82 (152)
300 3hra_A Ankyrin repeat family p 49.4 80 0.0027 26.0 8.8 37 318-354 158-196 (201)
301 4b4t_S RPN3, 26S proteasome re 49.3 69 0.0024 31.6 8.9 61 162-226 232-299 (523)
302 2nsz_A Programmed cell death p 48.4 90 0.0031 23.9 9.5 65 337-401 11-80 (129)
303 3ltj_A Alpharep-4; protein eng 48.2 1.2E+02 0.0039 25.1 20.0 49 230-278 119-167 (201)
304 2d2s_A Exocyst complex compone 47.7 68 0.0023 27.8 7.9 24 65-88 23-46 (235)
305 3ltm_A Alpha-REP4; protein eng 46.8 1.3E+02 0.0043 25.1 20.0 48 231-278 32-79 (211)
306 3ljn_A Hypothetical protein; a 46.4 74 0.0025 29.6 8.9 16 343-358 251-266 (364)
307 4aez_C MAD3, mitotic spindle c 45.8 1.4E+02 0.0049 25.5 9.6 55 380-434 130-185 (223)
308 4gq2_M Nucleoporin NUP120; bet 45.0 1.1E+02 0.0038 33.2 10.8 126 440-578 816-950 (950)
309 2wvi_A Mitotic checkpoint seri 44.3 1.2E+02 0.0042 24.4 8.9 55 381-435 77-132 (164)
310 4a1g_A Mitotic checkpoint seri 40.9 1.3E+02 0.0046 23.8 10.0 84 350-435 52-137 (152)
311 4g8k_A 2-5A-dependent ribonucl 40.4 2.1E+02 0.0072 25.9 14.8 105 216-332 218-328 (337)
312 3kea_A K1L; tropism, ANK repea 40.0 1.3E+02 0.0043 26.8 9.0 19 340-358 99-117 (285)
313 4a1g_A Mitotic checkpoint seri 40.0 1.4E+02 0.0048 23.7 8.3 53 178-231 82-135 (152)
314 1wgl_A TOLL-interacting protei 39.9 33 0.0011 22.1 3.4 48 550-599 9-58 (59)
315 1oai_A Nuclear RNA export fact 38.8 22 0.00076 22.9 2.5 25 174-198 33-57 (59)
316 2etb_A Transient receptor pote 37.3 69 0.0024 27.8 6.7 91 65-157 4-114 (256)
317 4ets_A Ferric uptake regulatio 36.1 1.2E+02 0.0041 24.3 7.2 72 177-249 13-86 (162)
318 4gq2_M Nucleoporin NUP120; bet 36.0 2.6E+02 0.0088 30.4 11.9 127 136-277 816-950 (950)
319 2rfa_A Transient receptor pote 35.7 1.9E+02 0.0064 24.3 9.2 150 67-230 7-184 (232)
320 3ljn_A Hypothetical protein; a 34.9 69 0.0024 29.8 6.6 37 322-358 157-195 (364)
321 2fu4_A Ferric uptake regulatio 34.2 1.1E+02 0.0038 20.8 6.9 61 85-146 7-68 (83)
322 3eu9_A Huntingtin-interacting 34.0 1.6E+02 0.0056 24.7 8.6 15 242-256 49-63 (240)
323 3aji_A 26S proteasome non-ATPa 33.9 2E+02 0.0068 24.1 9.1 18 138-155 11-28 (231)
324 2pnn_A Transient receptor pote 32.9 82 0.0028 27.7 6.5 93 64-157 14-125 (273)
325 3ygs_P Procaspase 9; apoptosis 32.8 95 0.0033 22.3 5.5 38 448-485 51-88 (97)
326 2p1h_A APAF-1, apoptotic prote 31.8 1.3E+02 0.0046 21.2 6.2 60 217-280 25-84 (94)
327 3aji_A 26S proteasome non-ATPa 31.2 2.3E+02 0.0079 23.7 9.0 20 66-85 9-28 (231)
328 3ygs_P Procaspase 9; apoptosis 30.3 64 0.0022 23.2 4.2 38 144-181 51-88 (97)
329 1oyz_A Hypothetical protein YI 29.1 2.9E+02 0.0099 24.1 22.1 255 241-511 15-279 (280)
330 2w57_A Ferric uptake regulatio 29.1 1.7E+02 0.0057 23.0 6.9 61 85-146 7-68 (150)
331 3b7b_A Euchromatic histone-lys 29.0 1.9E+02 0.0065 24.4 8.1 13 65-77 13-25 (237)
332 1n11_A Ankyrin; clathrin, BAND 28.7 3.8E+02 0.013 25.3 15.4 177 63-257 47-234 (437)
333 4ets_A Ferric uptake regulatio 28.2 1.8E+02 0.0063 23.2 7.1 71 76-147 13-86 (162)
334 3b7b_A Euchromatic histone-lys 28.1 2.7E+02 0.0091 23.4 10.4 15 243-257 85-99 (237)
335 2fe3_A Peroxide operon regulat 27.9 2E+02 0.007 22.3 7.2 59 390-449 13-71 (145)
336 2fe3_A Peroxide operon regulat 27.6 1.4E+02 0.0048 23.3 6.2 33 275-307 33-65 (145)
337 1mzb_A Ferric uptake regulatio 27.6 1.6E+02 0.0056 22.6 6.5 60 86-146 9-69 (136)
338 1bd8_A P19INK4D CDK4/6 inhibit 27.1 1E+02 0.0035 23.9 5.6 16 171-186 9-24 (156)
339 2xig_A Ferric uptake regulatio 26.9 2E+02 0.0068 22.6 7.0 39 269-307 32-70 (150)
340 1bpo_A Protein (clathrin); cla 25.7 4.7E+02 0.016 25.4 10.9 22 96-117 362-383 (494)
341 3l6a_A Eukaryotic translation 24.9 2.3E+02 0.0079 26.5 8.0 124 337-460 16-148 (364)
342 2p1h_A APAF-1, apoptotic prote 24.6 1.9E+02 0.0064 20.4 6.0 60 419-482 25-84 (94)
343 4aez_C MAD3, mitotic spindle c 24.5 3.1E+02 0.011 23.4 7.9 53 178-231 131-184 (223)
344 1bpo_A Protein (clathrin); cla 23.5 5.1E+02 0.018 25.1 10.9 87 334-421 362-451 (494)
345 2rfa_A Transient receptor pote 23.4 3.2E+02 0.011 22.7 10.5 16 140-155 10-25 (232)
346 3bqo_A Telomeric repeat-bindin 22.4 2.1E+02 0.0071 23.8 6.1 44 550-593 94-146 (211)
347 2o03_A Probable zinc uptake re 22.3 1.2E+02 0.004 23.2 4.7 47 65-111 15-61 (131)
348 2w57_A Ferric uptake regulatio 22.2 2.9E+02 0.0098 21.7 7.1 62 388-450 6-68 (150)
349 3mkr_B Coatomer subunit alpha; 22.1 4.5E+02 0.015 23.9 11.1 29 566-594 200-228 (320)
350 2ijq_A Hypothetical protein; s 22.1 3.1E+02 0.01 22.0 7.6 48 545-592 43-103 (161)
351 3qye_A TBC1 domain family memb 21.9 4.5E+02 0.015 23.9 9.9 141 64-212 153-309 (331)
352 1ug3_A EIF4GI, eukaryotic prot 21.7 4.7E+02 0.016 24.0 12.6 60 337-396 15-78 (339)
353 2pnn_A Transient receptor pote 21.5 1.2E+02 0.0041 26.5 5.4 17 445-461 109-125 (273)
354 1ug3_A EIF4GI, eukaryotic prot 21.5 4.7E+02 0.016 23.9 12.5 92 236-327 15-114 (339)
355 2xig_A Ferric uptake regulatio 21.0 3E+02 0.01 21.5 7.5 60 390-450 18-77 (150)
356 2o03_A Probable zinc uptake re 20.9 2.1E+02 0.0071 21.8 5.9 45 370-414 16-60 (131)
357 3mwm_A ZUR, putative metal upt 20.7 1.8E+02 0.0062 22.4 5.5 47 202-248 18-64 (139)
358 2fu4_A Ferric uptake regulatio 20.6 2E+02 0.007 19.4 6.9 60 389-449 7-67 (83)
359 3eyy_A Putative iron uptake re 20.2 2.2E+02 0.0075 22.2 6.0 30 279-308 33-62 (145)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.9e-41 Score=357.28 Aligned_cols=470 Identities=11% Similarity=0.036 Sum_probs=324.3
Q ss_pred hHHHHHHHHhCCChHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhh
Q 007329 63 PNSRLNELCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVK 142 (608)
Q Consensus 63 ~~~ll~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (608)
|+.++..+.+.|++++|+.+|+++.. ..|+..++..++.+|...|++++|..+++.+... .++..+++.++.+|.+
T Consensus 87 ~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~ 162 (597)
T 2xpi_A 87 LRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVK 162 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHH
Confidence 78889999999999999999999875 4467788888889999999999999998877544 4677888999999999
Q ss_pred cCChhhHHHHHcccCCC-------------------CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHH
Q 007329 143 FGDLGHAWYVFGKMCDR-------------------DLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCV 203 (608)
Q Consensus 143 ~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 203 (608)
.|++++|.++|+++... +..+|+.++.+|.+.|++++|+++|++|.+.+ +.+...+..+
T Consensus 163 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l 240 (597)
T 2xpi_A 163 LYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQL 240 (597)
T ss_dssp TTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred HhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHH
Confidence 99999999999965332 36788999999999999999999999998764 3344455555
Q ss_pred HHHhcCCCChhhHH--HH-HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCC--CCHhHHHHHHHHHHhcCC
Q 007329 204 LRTCGGVPDLKRGK--EV-HVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPK--RDRISWNAMISGYFENGE 278 (608)
Q Consensus 204 l~~~~~~~~~~~a~--~~-~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~ 278 (608)
...+...+..+.+. .+ +..+...+..+...+|+.++..|.+.|++++|.++|+++.+ ++..+|+.++.+|.+.|+
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 320 (597)
T 2xpi_A 241 VSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSR 320 (597)
T ss_dssp HHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTC
T ss_pred HHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcC
Confidence 55554443322211 11 44444445555566677778888888888888888888877 678888888888888888
Q ss_pred hhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhh
Q 007329 279 YMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSR 358 (608)
Q Consensus 279 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 358 (608)
+++|.++|+++.+.+. .+..++..++.++.+.|+.++|.++++.+.+.. +.+..+++.++..|.+.|++++|.++|++
T Consensus 321 ~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 398 (597)
T 2xpi_A 321 FIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSK 398 (597)
T ss_dssp HHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 8888888888876542 256677777777777777777777777777553 44566666666667777777666666666
Q ss_pred CCC---CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchh
Q 007329 359 MES---KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYII 435 (608)
Q Consensus 359 ~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 435 (608)
+.+ .+..+|+.++.+|.+.|++++|+++|+++.+.+ ..+..++..++.+|.+.|++++|.++|+.+.+.. +.+.
T Consensus 399 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~- 475 (597)
T 2xpi_A 399 SSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDP- 475 (597)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCH-
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCh-
Confidence 542 345566666666666666666666666665543 2244555555555555555555555555555443 2234
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhH-h----CCCCC--HHHHHHHHHH
Q 007329 436 IANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMM-L----NLKPN--SVTLVSILSA 508 (608)
Q Consensus 436 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~-~----~~~p~--~~~~~~ll~~ 508 (608)
.+|+.++..|.+.|++++|+++|+++. . +..|+ ..+|..++.+
T Consensus 476 ------------------------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~ 525 (597)
T 2xpi_A 476 ------------------------------LLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHA 525 (597)
T ss_dssp ------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHH
T ss_pred ------------------------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHH
Confidence 445555555555555555555555554 1 44555 5667777777
Q ss_pred HhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHH
Q 007329 509 CARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGY 574 (608)
Q Consensus 509 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~ 574 (608)
|.+.|++++|.++++++.+.++. +..+|..++.+|.+.|++++|.+.|+++ +.+...|..+...|
T Consensus 526 ~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 526 YRKLKMYDAAIDALNQGLLLSTN-DANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL 594 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTT
T ss_pred HHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 77777777777777777666533 5666777777777777777777777766 33455666655544
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.4e-41 Score=356.44 Aligned_cols=498 Identities=8% Similarity=-0.006 Sum_probs=342.8
Q ss_pred HHhCCChHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhhcCChhhH
Q 007329 70 LCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFGDLGHA 149 (608)
Q Consensus 70 ~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 149 (608)
+.+.|.+..+...+..+. .++...|+.++..|.+.|++++|..+++.+.... |+..++..++.+|.+.|++++|
T Consensus 63 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A 136 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDIT--GNPNDAFWLAQVYCCTGDYARA 136 (597)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhC--CCchHHHHHHHHHHHcCcHHHH
Confidence 344555666666655443 3578889999999999999999999999998655 4668889999999999999999
Q ss_pred HHHHccc--CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhC
Q 007329 150 WYVFGKM--CDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFG 227 (608)
Q Consensus 150 ~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 227 (608)
..+|+++ ..++..+++.++.+|.+.|++++|+++|+++.... . ...++...++. ..|
T Consensus 137 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~----~~~~~~~~~~~-----------~~~ 195 (597)
T 2xpi_A 137 KCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFR------K----DEKNANKLLMQ-----------DGG 195 (597)
T ss_dssp HHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC--------------------CC-----------CSS
T ss_pred HHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcc------c----ccccccccccc-----------ccc
Confidence 9999998 55788999999999999999999999999532211 0 00000000110 112
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCC---CHhHHHHHHHHHHhcCChhHHH--HH-HHHHHHCCCCCChhHH
Q 007329 228 YEADVDVVNALITMYVKCGDLVRARLVFDGMPKR---DRISWNAMISGYFENGEYMKGL--ML-FIMMREVLVDPDFMTL 301 (608)
Q Consensus 228 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~--~~-~~~m~~~~~~p~~~~~ 301 (608)
.+.+..+|+.++.+|.+.|++++|.++|+++.+. +...+..+...+...+..+.+. .+ +..+...+..+...+|
T Consensus 196 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 275 (597)
T 2xpi_A 196 IKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLY 275 (597)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHH
Confidence 3334455555555555555555555555554321 2333333333332222211111 11 3333333333444455
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHcCC
Q 007329 302 SSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMES---KDVVSWTTMISCYEGSV 378 (608)
Q Consensus 302 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~ 378 (608)
+.++..|.+.|++++|.++|+.+.+. +++..+++.++..|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|
T Consensus 276 ~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 353 (597)
T 2xpi_A 276 MLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESG 353 (597)
T ss_dssp HTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHT
T ss_pred HHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhC
Confidence 55555666666666666666665544 35566666666666666666666666666543 34556666666777777
Q ss_pred CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHc
Q 007329 379 LPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFH 458 (608)
Q Consensus 379 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 458 (608)
++++|..+++++.+.. ..+..++..++..|.+.|++++|.++|+.+.+.. +.+..+|+.++.+|.+.|++++|.++|+
T Consensus 354 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 431 (597)
T 2xpi_A 354 EKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYT 431 (597)
T ss_dssp CHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7777777777776442 3356677777777777777777777777776654 4456677777777777778887777777
Q ss_pred cCC---CCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHh----CCC
Q 007329 459 QIP---DKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRI----GVA 531 (608)
Q Consensus 459 ~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~ 531 (608)
++. ..+..+|+.++.+|.+.|++++|+++|+++....+.+..+|..++..+.+.|++++|.++++++.+. +..
T Consensus 432 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 511 (597)
T 2xpi_A 432 TAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSN 511 (597)
T ss_dssp HHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccc
Confidence 654 2467788899999999999999999999998555668999999999999999999999999999877 667
Q ss_pred CC--ccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 532 FD--GFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 532 p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
|+ ..+|..++.+|.+.|++++|.+.++++ +.+..+|..++.+|...|++++|.++|+++.+. .|++.
T Consensus 512 p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~ 584 (597)
T 2xpi_A 512 EKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI--SPNEI 584 (597)
T ss_dssp SGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCCh
Confidence 77 679999999999999999999999998 458999999999999999999999999999986 77765
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=5.1e-29 Score=250.81 Aligned_cols=211 Identities=12% Similarity=0.077 Sum_probs=168.9
Q ss_pred HHHHHHHHHHhcCCCCCC-cchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcc
Q 007329 179 EALSLYQRMFWVGGVKPD-VYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDG 257 (608)
Q Consensus 179 ~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 257 (608)
.+..+.+++.+.+ +.+. ...++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+...++
T Consensus 8 ~~e~L~~~~~~k~-~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------ 80 (501)
T 4g26_A 8 PSENLSRKAKKKA-IQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------ 80 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS------
T ss_pred hHHHHHHHHHHhc-ccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh------
Confidence 3455566666665 4443 3468889999999999999999999999999999999999999999887765432
Q ss_pred CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccch
Q 007329 258 MPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCN 337 (608)
Q Consensus 258 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 337 (608)
.+.+..++|.++|++|...|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|+
T Consensus 81 ----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn 144 (501)
T 4g26_A 81 ----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYG 144 (501)
T ss_dssp ----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred ----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceeh
Confidence 2345678899999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCC----CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 007329 338 PLIKMYLSFGNREEGEKVFSRMES----KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACL 412 (608)
Q Consensus 338 ~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 412 (608)
.+|.+|++.|++++|.++|++|.+ ||..+|++||.+|++.|++++|.++|++|.+.|..|+..||+.++..|+..
T Consensus 145 ~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 145 PALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 888888888888888888888864 788888888888888888888888888888888888888888888877753
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=6.2e-26 Score=224.97 Aligned_cols=370 Identities=11% Similarity=0.066 Sum_probs=190.8
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 007329 169 GGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDL 248 (608)
Q Consensus 169 ~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 248 (608)
..+.+.|++++|++.++.+.+.. +.+...+..+...+...|++++|...++..++.. +.+..+|..+...|.+.|++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 34455666666666666665532 2233334444444555555666655555555442 33444555555555555555
Q ss_pred HHHHHHHccCCC---CCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhhcCChhhHHHHHHHH
Q 007329 249 VRARLVFDGMPK---RDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDF-MTLSSVISASELVGDEKLGREVHGYV 324 (608)
Q Consensus 249 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~ 324 (608)
++|...|+++.+ .+...|..+..++.+.|++++|.+.|+++.+. .|+. ..+..+...+...|++++|.+.|+.+
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 555555554431 13334555555555555555555555554442 2222 22333333344444444444444444
Q ss_pred HHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHH
Q 007329 325 IKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIAS 404 (608)
Q Consensus 325 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ 404 (608)
.+.. +. +..+|..+...+...|++++|...|+++.+.+ +.+...+..
T Consensus 162 l~~~-p~-------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 208 (388)
T 1w3b_A 162 IETQ-PN-------------------------------FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYIN 208 (388)
T ss_dssp HHHC-TT-------------------------------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHhC-CC-------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHH
Confidence 4332 22 23344444444444555555555555444432 112344444
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC--C-CcccHHHHHHHHHhCCCc
Q 007329 405 VLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPD--K-NVISWTSIILGLRLNNRS 481 (608)
Q Consensus 405 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~ 481 (608)
+...+...|++++|...++...+.. +.+..++..+..+|.+.|++++|.+.|+++.+ | +...|..+...+.+.|++
T Consensus 209 lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 287 (388)
T 1w3b_A 209 LGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSV 287 (388)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Confidence 4555555555555555555544433 22344445555555555555555555554431 1 234555566666666666
Q ss_pred hHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc-
Q 007329 482 FEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN- 560 (608)
Q Consensus 482 ~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 560 (608)
++|++.|+++....+.+..++..+...+...|++++|.+.++++.+..+. +...+..++.+|.+.|++++|.+.++++
T Consensus 288 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 366 (388)
T 1w3b_A 288 AEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAI 366 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666666666444555666666666666666666666666666654322 3455666666666667777776666666
Q ss_pred ---CCCHHHHHHHHHHHHhcC
Q 007329 561 ---ERDVSAWNILLTGYAERG 578 (608)
Q Consensus 561 ---~~~~~~~~~l~~~~~~~g 578 (608)
+.+...|..+...+...|
T Consensus 367 ~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 367 RISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp TTCTTCHHHHHHHHHHHHHTC
T ss_pred hhCCCCHHHHHhHHHHHHHcc
Confidence 334556666666655544
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=4.9e-26 Score=225.71 Aligned_cols=329 Identities=10% Similarity=0.019 Sum_probs=251.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHH
Q 007329 265 SWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYL 344 (608)
Q Consensus 265 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 344 (608)
.+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|++++|...|+.+.+.. +.+...+..+..++.
T Consensus 35 ~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 112 (388)
T 1w3b_A 35 VLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALV 112 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHH
Confidence 33344444444444455544444444321 2234445555555555555555555555555442 223344555666666
Q ss_pred hcCChHHHHHHHhhCCC--C-ChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 007329 345 SFGNREEGEKVFSRMES--K-DVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKL 421 (608)
Q Consensus 345 ~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 421 (608)
+.|++++|.+.|+++.+ | +...+..+...+...|++++|.+.|+++.+.. +-+..++..+...+...|++++|...
T Consensus 113 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 191 (388)
T 1w3b_A 113 AAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHH 191 (388)
T ss_dssp HHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666666655543 3 33456667777888888999999998888763 23578899999999999999999999
Q ss_pred HHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCC--C-CCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCC
Q 007329 422 HQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIP--D-KNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPN 498 (608)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~ 498 (608)
++.+.+.+ +.+...+..+...+...|++++|...|++.. . .+..+|..+...+.+.|++++|++.|+++....+.+
T Consensus 192 ~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 270 (388)
T 1w3b_A 192 FEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF 270 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 99999876 5567888999999999999999999998765 2 356789999999999999999999999999655667
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHH
Q 007329 499 SVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGY 574 (608)
Q Consensus 499 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~ 574 (608)
..++..+..++.+.|++++|.+.++++.+..+. +..++..++..|.+.|++++|.+.++++ +.+..+|..++..|
T Consensus 271 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 349 (388)
T 1w3b_A 271 PDAYCNLANALKEKGSVAEAEDCYNTALRLCPT-HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVL 349 (388)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 889999999999999999999999999988654 7788999999999999999999999998 44688999999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 575 AERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 575 ~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
.+.|++++|.+.++++.+. .|+..
T Consensus 350 ~~~g~~~~A~~~~~~a~~~--~p~~~ 373 (388)
T 1w3b_A 350 QQQGKLQEALMHYKEAIRI--SPTFA 373 (388)
T ss_dssp HTTTCCHHHHHHHHHHHTT--CTTCH
T ss_pred HHcCCHHHHHHHHHHHHhh--CCCCH
Confidence 9999999999999999874 78776
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=3.3e-28 Score=244.88 Aligned_cols=184 Identities=13% Similarity=0.062 Sum_probs=176.1
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCC---------hhhHHHHHHHHHHhCCCCCcc
Q 007329 264 ISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGD---------EKLGREVHGYVIKMGFSDDVS 334 (608)
Q Consensus 264 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 334 (608)
..++.+|.+|++.|++++|+++|++|.+.|+.||..||+.||.+|++.+. .+.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 46888899999999999999999999999999999999999999987664 678999999999999999999
Q ss_pred cchHHHHHHHhcCChHHHHHHHhhCCC----CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007329 335 VCNPLIKMYLSFGNREEGEKVFSRMES----KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACA 410 (608)
Q Consensus 335 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 410 (608)
+|+++|.+|++.|++++|.++|++|.+ ||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 999999999999999999999999975 8999999999999999999999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhc
Q 007329 411 CLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKC 447 (608)
Q Consensus 411 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 447 (608)
+.|++++|.+++++|.+.|..|+..+|+.++..|...
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999998763
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=9.5e-24 Score=217.71 Aligned_cols=424 Identities=8% Similarity=-0.052 Sum_probs=229.9
Q ss_pred hHHhHHHHHhhhcCChhhHHHHHcccC--CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhc
Q 007329 131 RLGNAFLSMFVKFGDLGHAWYVFGKMC--DRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCG 208 (608)
Q Consensus 131 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~ 208 (608)
..+......+.+.|++++|+..|+++. .|+..+|..+..++.+.|++++|++.++++.+.. +.+...+..+..++.
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHHHHH
Confidence 445566677777788888888887773 3677777777788888888888888888877654 445567777777777
Q ss_pred CCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCC----CHhHHHHHHHHHHhcCChhHHHH
Q 007329 209 GVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKR----DRISWNAMISGYFENGEYMKGLM 284 (608)
Q Consensus 209 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~ 284 (608)
..|++++|...|+.+.+.+ +++......++..+........+.+.+..+... +...+..-...............
T Consensus 85 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 8888888888888777765 234444444444444433333333322222111 11111111111111111112222
Q ss_pred HHHHHHHCCCCC--------C-hhHHHHHHHHHh---hcCChhhHHHHHHHHHH-----hCCC--------CCcccchHH
Q 007329 285 LFIMMREVLVDP--------D-FMTLSSVISASE---LVGDEKLGREVHGYVIK-----MGFS--------DDVSVCNPL 339 (608)
Q Consensus 285 ~~~~m~~~~~~p--------~-~~~~~~ll~~~~---~~~~~~~a~~~~~~~~~-----~~~~--------~~~~~~~~l 339 (608)
+...+......+ + ...+......+. +.|++++|..+++.+.+ ..-. .+..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 222221111111 1 222222222222 26777777777777666 2111 123445556
Q ss_pred HHHHHhcCChHHHHHHHhhCCC--CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHH
Q 007329 340 IKMYLSFGNREEGEKVFSRMES--KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDL 417 (608)
Q Consensus 340 ~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 417 (608)
...+...|++++|...|+++.+ |+...|..+...|...|++++|...++++.... ..+...+..+...+...|+++.
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 6666666666666666666543 334555556666666666666666666666543 2244555666666666666666
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCC---CCCcccHHHHHHHHHhCCCchHHHHHHHHhHh-
Q 007329 418 GIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIP---DKNVISWTSIILGLRLNNRSFEALIFFRKMML- 493 (608)
Q Consensus 418 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~- 493 (608)
|...++.+.+.. +.+...+..+...|.+.|++++|...++++. ..+...|..+...+...|++++|...++++..
T Consensus 323 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 401 (514)
T 2gw1_A 323 AGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL 401 (514)
T ss_dssp HHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 666666666544 3344555666666666666666666666544 12344555566666666666666666666551
Q ss_pred -CCCCC----HHHHHHHHHHHhc---cCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 494 -NLKPN----SVTLVSILSACAR---IGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 494 -~~~p~----~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
...++ ...+..+...+.. .|++++|...++++.+..+. +...+..++.+|.+.|++++|.+.++++
T Consensus 402 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 402 ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR-SEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 11111 2255556666666 66666666666666555433 3445555666666666666666666655
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.9e-22 Score=207.95 Aligned_cols=437 Identities=10% Similarity=-0.046 Sum_probs=281.3
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhhc
Q 007329 64 NSRLNELCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKF 143 (608)
Q Consensus 64 ~~ll~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 143 (608)
..+-..+.+.|++++|+..|+++.+.. |+...+..+..++...|++++|...++.+++..+. +...+..+..++.+.
T Consensus 10 ~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~ 86 (514)
T 2gw1_A 10 KDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD-YSKVLLRRASANEGL 86 (514)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH-HHHHHHHHHHHHHHH
Confidence 344455666666666666666666544 45566666666666666666666666666655432 334455555555555
Q ss_pred CChhhHHHHHcccCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHH
Q 007329 144 GDLGHAWYVFGKMCD---RDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVH 220 (608)
Q Consensus 144 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 220 (608)
|++++|...|+++.. .+......++..+........+.+.+..+...+ ..|+...+..-...
T Consensus 87 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~-------------- 151 (514)
T 2gw1_A 87 GKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTAT-ATPTELSTQPAKER-------------- 151 (514)
T ss_dssp TCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-------------------------------------
T ss_pred hhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhccCChhhHH--------------
Confidence 555555555554411 122223333333333222222222222222221 11111111110000
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCC-CHhHHHHHHHHHHh---cCChhHHHHHHHHHHH-----
Q 007329 221 VHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKR-DRISWNAMISGYFE---NGEYMKGLMLFIMMRE----- 291 (608)
Q Consensus 221 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~----- 291 (608)
.......|+...... +.......... ..+..+ +...+......+.. .|++++|...|+++.+
T Consensus 152 --~~~~~~~~~~~~~~~----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 222 (514)
T 2gw1_A 152 --KDKQENLPSVTSMAS----FFGIFKPELTF---ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQ 222 (514)
T ss_dssp -------CCCCHHHHHH----HHTTSCCCCCC---SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred --HhhccCCchhHHHHH----HHhhcCHHHHH---HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhh
Confidence 000011122111111 11111000000 111112 34455555555554 7889999999998877
Q ss_pred CCCCC--------ChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCC--
Q 007329 292 VLVDP--------DFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMES-- 361 (608)
Q Consensus 292 ~~~~p--------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-- 361 (608)
....| +...+..+...+...|++++|...++.+.+.... ...+..+...+...|++++|...++++.+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 300 (514)
T 2gw1_A 223 LDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD 300 (514)
T ss_dssp TTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC
T ss_pred hccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC
Confidence 31122 2446677778888899999999999998887533 77888889999999999999999988765
Q ss_pred -CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 007329 362 -KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTL 440 (608)
Q Consensus 362 -~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 440 (608)
.+...|..+...|...|++++|...+++..+... .+...+..+...+...|+++.|...++.+.+.. +.+...+..+
T Consensus 301 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 378 (514)
T 2gw1_A 301 SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFF 378 (514)
T ss_dssp TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHH
Confidence 3567888889999999999999999999988753 256788888999999999999999999998765 4567788889
Q ss_pred HHHhHhcCCHHHHHHHHccCCC--C-C------cccHHHHHHHHHh---CCCchHHHHHHHHhHhCCCCCHHHHHHHHHH
Q 007329 441 IDMYSKCKCIDKALEVFHQIPD--K-N------VISWTSIILGLRL---NNRSFEALIFFRKMMLNLKPNSVTLVSILSA 508 (608)
Q Consensus 441 i~~~~~~g~~~~A~~~~~~~~~--~-~------~~~~~~l~~~~~~---~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~ 508 (608)
...|.+.|++++|...++++.+ | + ...|..+...+.. .|++++|.+.++++....+.+..++..+...
T Consensus 379 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 458 (514)
T 2gw1_A 379 AEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQM 458 (514)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 9999999999999999988762 1 2 3388899999999 9999999999999985455678889999999
Q ss_pred HhccCcHHHHHHHHHHHHHhCCC
Q 007329 509 CARIGALMCGKEIHAHALRIGVA 531 (608)
Q Consensus 509 ~~~~~~~~~a~~~~~~~~~~~~~ 531 (608)
+...|++++|...++++.+..+.
T Consensus 459 ~~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 459 KLQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSS
T ss_pred HHHhcCHHHHHHHHHHHHHhccc
Confidence 99999999999999999987654
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=8.7e-23 Score=211.75 Aligned_cols=417 Identities=13% Similarity=0.001 Sum_probs=263.7
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHH
Q 007329 162 FSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITM 241 (608)
Q Consensus 162 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 241 (608)
..|..+...+.+.|++++|++.|+++.+.. +.+...+..+..++...|++++|.+.++.+++.+ +.+..++..+..+
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 345555566666666666666666666543 3455566666666666666666666666666654 3355666667777
Q ss_pred HHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHC------CCCCChhHHHHHHHHHhhcCChh
Q 007329 242 YVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREV------LVDPDFMTLSSVISASELVGDEK 315 (608)
Q Consensus 242 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~p~~~~~~~ll~~~~~~~~~~ 315 (608)
|...|++++|...|+.+ ..++...+..+..+...+...+|...++++... ...|+...... +....+.+
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLAS----FFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHH----HHHTSCHH
T ss_pred HHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHH----HHHhcChH
Confidence 77777777777777533 222223333344455555556677777666432 12233333222 22222322
Q ss_pred hHHHHHHHHHHhCCCCCcc---cchHHHHHH--------HhcCChHHHHHHHhhCCC--CC--------hhhHHHHHHHH
Q 007329 316 LGREVHGYVIKMGFSDDVS---VCNPLIKMY--------LSFGNREEGEKVFSRMES--KD--------VVSWTTMISCY 374 (608)
Q Consensus 316 ~a~~~~~~~~~~~~~~~~~---~~~~l~~~~--------~~~~~~~~a~~~~~~~~~--~~--------~~~~~~li~~~ 374 (608)
.+...+... ...+.. ....+...+ ...|++++|..+|+++.+ |+ ...+..+...+
T Consensus 178 ~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~ 253 (537)
T 3fp2_A 178 LEVSSVNTS----SNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFH 253 (537)
T ss_dssp HHHHTSCCC----CSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhc----cccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHH
Confidence 222211110 011111 111111111 112467777777777765 22 12455566677
Q ss_pred HcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHH
Q 007329 375 EGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKAL 454 (608)
Q Consensus 375 ~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 454 (608)
...|++++|...+++..+. .|+...+..+...+...|+++.|...++.+.+.. +.+..++..+...|...|++++|.
T Consensus 254 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 330 (537)
T 3fp2_A 254 FLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAK 330 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHH
Confidence 7888888888888888875 4557777778888888888888888888888765 456677788888888888888888
Q ss_pred HHHccCC---CCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCC
Q 007329 455 EVFHQIP---DKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVA 531 (608)
Q Consensus 455 ~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 531 (608)
+.|+++. ..+...|..+...+...|++++|++.++++....+.+...+..+...+...|++++|.+.++++.+..+.
T Consensus 331 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 331 EDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 8888765 2345677888888888888888888888888445556677888888888888888888888887765432
Q ss_pred CC-----ccHHHHHHHHhHhc----------CCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007329 532 FD-----GFLPNALLDMYVRC----------GRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKMID 592 (608)
Q Consensus 532 p~-----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 592 (608)
.. ...+..+..+|.+. |++++|...++++ +.+...|..+...|...|++++|.+.|++..+
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 11 11233445667777 8888888888887 44677888888888888888888888888887
Q ss_pred c
Q 007329 593 S 593 (608)
Q Consensus 593 ~ 593 (608)
.
T Consensus 491 ~ 491 (537)
T 3fp2_A 491 L 491 (537)
T ss_dssp H
T ss_pred h
Confidence 5
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=2e-21 Score=196.69 Aligned_cols=208 Identities=8% Similarity=-0.026 Sum_probs=124.9
Q ss_pred HHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccC
Q 007329 179 EALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGM 258 (608)
Q Consensus 179 ~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 258 (608)
.+...+....... +.+...+..+...+.+.|++++|..+|+.+++.. +.+..++..+..+|...|++++|...|+++
T Consensus 10 ~~~~~~~~~~~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 10 GVDLGTENLYFQS--MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccccccccccccc--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3444455544332 4556677777788888888888888888887764 446777788888888888888888888776
Q ss_pred CC---CCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh----hHHHHHHHH------------HhhcCChhhHHH
Q 007329 259 PK---RDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDF----MTLSSVISA------------SELVGDEKLGRE 319 (608)
Q Consensus 259 ~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~------------~~~~~~~~~a~~ 319 (608)
.+ .+...|..+...|.+.|++++|.+.|+++.+. .|+. ..+..+... +...|++++|..
T Consensus 87 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~ 164 (450)
T 2y4t_A 87 IQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIA 164 (450)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 53 35667788888888888888888888888764 3333 444444333 455555555555
Q ss_pred HHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHcCCCchHHHHHHHHHHH
Q 007329 320 VHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMES---KDVVSWTTMISCYEGSVLPDKAVETYQMMEA 392 (608)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 392 (608)
.++.+.+.. +.+..++..+..+|.+.|++++|.++|+++.+ .+..+|..+...|...|++++|+..|+++..
T Consensus 165 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 165 FLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239 (450)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555443 33444555555555555555555555555433 2344555555555555555555555555554
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.89 E-value=6.2e-21 Score=193.04 Aligned_cols=345 Identities=12% Similarity=-0.012 Sum_probs=197.1
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHccCCC---CCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHH
Q 007329 230 ADVDVVNALITMYVKCGDLVRARLVFDGMPK---RDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVIS 306 (608)
Q Consensus 230 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 306 (608)
.+...+..+...|.+.|++++|..+|+++.+ .+...|..+..++...|++++|...|+++.+.+ +.+...+..+..
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 3455666666666666666666666665542 255566666666666666666666666666542 123445555566
Q ss_pred HHhhcCChhhHHHHHHHHHHhCCCCCc---ccchHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHcCCCchHH
Q 007329 307 ASELVGDEKLGREVHGYVIKMGFSDDV---SVCNPLIKMYLSFGNREEGEKVFSRMESKDVVSWTTMISCYEGSVLPDKA 383 (608)
Q Consensus 307 ~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 383 (608)
.+...|++++|...++.+.+.. +.+. ..+..+...+... .+..+...+...|++++|
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~A 162 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQ-------------------RLRSQALNAFGSGDYTAA 162 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHH-------------------HHHHHHHHHHHcCCHHHH
Confidence 6666666666666666665432 2222 3333332221000 011112234555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC-
Q 007329 384 VETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPD- 462 (608)
Q Consensus 384 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~- 462 (608)
+..|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+..+|.+.|++++|...|+++.+
T Consensus 163 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 240 (450)
T 2y4t_A 163 IAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 240 (450)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55555555432 2244555555555555566666665555555443 33445555555555566666666655555441
Q ss_pred -C-CcccHHHH------------HHHHHhCCCchHHHHHHHHhHhCCCCC----HHHHHHHHHHHhccCcHHHHHHHHHH
Q 007329 463 -K-NVISWTSI------------ILGLRLNNRSFEALIFFRKMMLNLKPN----SVTLVSILSACARIGALMCGKEIHAH 524 (608)
Q Consensus 463 -~-~~~~~~~l------------~~~~~~~~~~~~A~~~~~~m~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~ 524 (608)
| +...+..+ ...+.+.|++++|++.|+++....+.+ ...+..+..++.+.|++++|...+++
T Consensus 241 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 320 (450)
T 2y4t_A 241 DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSE 320 (450)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 2 22222222 667777788888888888877322222 33667777778888888888888888
Q ss_pred HHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc---CC-CHHHHHHHHHH------------HHhcC-----CHHHH
Q 007329 525 ALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN---ER-DVSAWNILLTG------------YAERG-----QGALA 583 (608)
Q Consensus 525 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~-~~~~~~~l~~~------------~~~~g-----~~~~A 583 (608)
+.+..+. +...+..++.+|...|++++|.+.++++ .| +...+..+..+ |...| +.+++
T Consensus 321 a~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~ 399 (450)
T 2y4t_A 321 VLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEI 399 (450)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHH
T ss_pred HHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHH
Confidence 7776543 5677777888888888888888888777 33 45666666533 33334 55666
Q ss_pred HHHHHHHHHcCCCCCc
Q 007329 584 EEFFRKMIDSKGNWRK 599 (608)
Q Consensus 584 ~~~~~~m~~~g~~p~~ 599 (608)
.+.++++... ..||.
T Consensus 400 ~~~y~~~~l~-~~pd~ 414 (450)
T 2y4t_A 400 IKAYRKLALQ-WHPDN 414 (450)
T ss_dssp HHHHHHHHHH-SCGGG
T ss_pred HHHHHHHHHH-hCCCC
Confidence 7777763221 35554
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=1.1e-20 Score=195.78 Aligned_cols=423 Identities=10% Similarity=-0.044 Sum_probs=212.8
Q ss_pred hHHHHHHHHhCCChHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhh
Q 007329 63 PNSRLNELCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVK 142 (608)
Q Consensus 63 ~~~ll~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (608)
+..+...+.+.|++++|+..|+++.+..+ .+...+..+..++...|++++|...++.+++..+. +...+..+..++..
T Consensus 28 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~ 105 (537)
T 3fp2_A 28 LKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASANES 105 (537)
T ss_dssp HHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHH
Confidence 44455556666666666666666655332 24455555555556666666666666665555432 34444555555555
Q ss_pred cCChhhHHHHHcccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHH
Q 007329 143 FGDLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVH 222 (608)
Q Consensus 143 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 222 (608)
.|++++|...|+.+ ..+....+..+..+...+....|++.++.+.... |+.
T Consensus 106 ~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~---~~~------------------------- 156 (537)
T 3fp2_A 106 LGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKD---EGR------------------------- 156 (537)
T ss_dssp HTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC---------------------------------
T ss_pred cCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhC---ccc-------------------------
Confidence 55555555555422 1111111222333333334444555555443221 000
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCHh---HHHHHHHHHHh--------cCChhHHHHHHHHHHH
Q 007329 223 VIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRI---SWNAMISGYFE--------NGEYMKGLMLFIMMRE 291 (608)
Q Consensus 223 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~--------~~~~~~a~~~~~~m~~ 291 (608)
.....|+ ...+..+....+.+.+...+......+.. ....+...+.. .|++++|..+++++.+
T Consensus 157 --~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~ 230 (537)
T 3fp2_A 157 --GSQVLPS----NTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLS 230 (537)
T ss_dssp ----CCCCC----HHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred --cccccch----HhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 0001122 23344455566666666666666554332 33333333222 2366777777777665
Q ss_pred CCCCCCh-h-------HHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCCCC
Q 007329 292 VLVDPDF-M-------TLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKD 363 (608)
Q Consensus 292 ~~~~p~~-~-------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 363 (608)
.. |+. . ++..+...+...|++++|...++.+.+.. |+
T Consensus 231 ~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~---------------------------------~~ 275 (537)
T 3fp2_A 231 AN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH---------------------------------PT 275 (537)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------------------CC
T ss_pred HC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC---------------------------------CC
Confidence 42 221 1 23333334444445555555555444432 23
Q ss_pred hhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 007329 364 VVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDM 443 (608)
Q Consensus 364 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 443 (608)
...|..+...+...|++++|...++++.+.. +.+..++..+...+...|+++.|...++.+.+.. +.+...+..+...
T Consensus 276 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 353 (537)
T 3fp2_A 276 PNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACL 353 (537)
T ss_dssp HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHH
T ss_pred chHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3344444445555555555555555555432 1234455555555555555666655555555543 2334455555555
Q ss_pred hHhcCCHHHHHHHHccCC---CCCcccHHHHHHHHHhCCCchHHHHHHHHhH--h--C--CCCCHHHHHHHHHHHhcc--
Q 007329 444 YSKCKCIDKALEVFHQIP---DKNVISWTSIILGLRLNNRSFEALIFFRKMM--L--N--LKPNSVTLVSILSACARI-- 512 (608)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~--~--~--~~p~~~~~~~ll~~~~~~-- 512 (608)
|.+.|++++|.+.++++. ..+...|..+...+...|++++|.+.|+++. . . .......+......+...
T Consensus 354 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 433 (537)
T 3fp2_A 354 LYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSS 433 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhh
Confidence 666666666666655543 1234455566666666666666666666655 1 1 111222234444555555
Q ss_pred --------CcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 513 --------GALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 513 --------~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
|++++|...++++.+..+. +...+..++.+|.+.|++++|.+.|+++
T Consensus 434 ~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 434 QDPTQLDEEKFNAAIKLLTKACELDPR-SEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp C----CCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchhhhHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 7777777777777766543 4566677777777777777777777776
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.83 E-value=1e-17 Score=163.63 Aligned_cols=299 Identities=10% Similarity=-0.049 Sum_probs=148.8
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHH
Q 007329 264 ISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMY 343 (608)
Q Consensus 264 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 343 (608)
..+..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHH
Confidence 345555556666666666666666655532 1234455555555566666666666666655543 33444555555566
Q ss_pred HhcCChHHHHHHHhhCCC--C----ChhhHHHH------------HHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHH
Q 007329 344 LSFGNREEGEKVFSRMES--K----DVVSWTTM------------ISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASV 405 (608)
Q Consensus 344 ~~~~~~~~a~~~~~~~~~--~----~~~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~l 405 (608)
...|++++|...|++..+ | +...+..+ ...+...|++++|+..++++.+.. +.+...+..+
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 160 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELR 160 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 666666666666555543 2 11112211 233444444444444444444332 1133334444
Q ss_pred HHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHH
Q 007329 406 LSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEAL 485 (608)
Q Consensus 406 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 485 (608)
...+...|+++.|...++.+.+.. +.+. ..|..+...+...|++++|.
T Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~-------------------------------~~~~~la~~~~~~~~~~~A~ 208 (359)
T 3ieg_A 161 AECFIKEGEPRKAISDLKAASKLK-SDNT-------------------------------EAFYKISTLYYQLGDHELSL 208 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-SCCH-------------------------------HHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCH-------------------------------HHHHHHHHHHHHcCCHHHHH
Confidence 444444444444444444444332 2233 34444444444455555555
Q ss_pred HHHHHhHhCCCCCHHHHH------------HHHHHHhccCcHHHHHHHHHHHHHhCCCCCc----cHHHHHHHHhHhcCC
Q 007329 486 IFFRKMMLNLKPNSVTLV------------SILSACARIGALMCGKEIHAHALRIGVAFDG----FLPNALLDMYVRCGR 549 (608)
Q Consensus 486 ~~~~~m~~~~~p~~~~~~------------~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~ 549 (608)
+.+++.....+.+...+. .+...+.+.|++++|...++++.+..+. +. ..+..+..+|.+.|+
T Consensus 209 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~ 287 (359)
T 3ieg_A 209 SEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEK 287 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccC
Confidence 555544422222222221 2244455566666666666666554433 21 123345566666666
Q ss_pred HHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 550 MKPAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 550 ~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
+++|.+.++++ +.+...|..+...|...|++++|.+.|++..+. .|++.
T Consensus 288 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~ 340 (359)
T 3ieg_A 288 PVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQ 340 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCh
Confidence 66666666665 335556666666666666666666666666653 45543
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.83 E-value=7.6e-18 Score=164.60 Aligned_cols=274 Identities=8% Similarity=-0.018 Sum_probs=195.5
Q ss_pred hhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHH
Q 007329 298 FMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMES---KDVVSWTTMISCY 374 (608)
Q Consensus 298 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~ 374 (608)
...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...|+++.+ .+...|..+...+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 3455566667777778888888887777664 44556666677777777777777777766543 2445666666666
Q ss_pred HcCCCchHHHHHHHHHHHCCCCC---C-HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCH
Q 007329 375 EGSVLPDKAVETYQMMEAEGSMP---D-EITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCI 450 (608)
Q Consensus 375 ~~~~~~~~a~~~~~~m~~~g~~p---~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 450 (608)
...|++++|...++++.+. .| + ...+..+..... ...+..+...+...|++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 7777777777777766654 23 1 112211111000 01122335667778888
Q ss_pred HHHHHHHccCC---CCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 007329 451 DKALEVFHQIP---DKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALR 527 (608)
Q Consensus 451 ~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 527 (608)
++|.+.++++. ..+...+..+...+...|++++|+..++++....+.+..++..+...+...|++++|.+.++++.+
T Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 88888888765 235567888888999999999999999999855666888999999999999999999999999998
Q ss_pred hCCCCCccHHH------------HHHHHhHhcCCHHHHHHHHHhc---CCC-H----HHHHHHHHHHHhcCCHHHHHHHH
Q 007329 528 IGVAFDGFLPN------------ALLDMYVRCGRMKPAWNQFNSN---ERD-V----SAWNILLTGYAERGQGALAEEFF 587 (608)
Q Consensus 528 ~~~~p~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~---~~~-~----~~~~~l~~~~~~~g~~~~A~~~~ 587 (608)
..+. +...+. .++..+.+.|++++|.+.++++ .|+ . ..|..+...+...|++++|.+.+
T Consensus 217 ~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 295 (359)
T 3ieg_A 217 LDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRIC 295 (359)
T ss_dssp HCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 7654 333332 2367799999999999999998 443 3 23556888999999999999999
Q ss_pred HHHHHcCCCCCch
Q 007329 588 RKMIDSKGNWRKL 600 (608)
Q Consensus 588 ~~m~~~g~~p~~~ 600 (608)
++..+. .|+..
T Consensus 296 ~~~~~~--~~~~~ 306 (359)
T 3ieg_A 296 SEVLQM--EPDNV 306 (359)
T ss_dssp HHHHHH--CTTCH
T ss_pred HHHHHh--CcccH
Confidence 999986 67665
No 15
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.82 E-value=9.6e-16 Score=163.48 Aligned_cols=467 Identities=13% Similarity=0.041 Sum_probs=332.9
Q ss_pred hHH-HHHHHHhCCChHHHHHHHHHHhhc----CCCCChhhHHHHHHHhhccCCchhhh-----------HHHHHHHHhc-
Q 007329 63 PNS-RLNELCLNGSLEQALKYLDSMQEL----NICVDEDALVNLVRLCEWKRGYDEGL-----------YLHSVVSKTM- 125 (608)
Q Consensus 63 ~~~-ll~~~~~~~~~~~A~~~~~~~~~~----g~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~~~- 125 (608)
|.+ .+..||...|+--|.-.|++-.-. .+......|....+.+.++.+.+.=- ++.++.....
T Consensus 900 yd~~~vgkyce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL 979 (1630)
T 1xi4_A 900 YDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTAL 979 (1630)
T ss_pred ccHHHHHHHHHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhc
Confidence 444 467799988888887777641000 01122334555555555444433222 2222222222
Q ss_pred -CCcchhHHhHHHHHhhhcCChhhHHHHHcccCC-C-----CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcc
Q 007329 126 -SHLSVRLGNAFLSMFVKFGDLGHAWYVFGKMCD-R-----DLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVY 198 (608)
Q Consensus 126 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 198 (608)
-..++.--...++.|...|...+|++++++..- + +...-+.++.+..+. +..+..++.++... .
T Consensus 980 ~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~--------~ 1050 (1630)
T 1xi4_A 980 SETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN--------Y 1050 (1630)
T ss_pred ccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh--------c
Confidence 122333345678888899999999999998842 2 224556677777766 55677776666542 1
Q ss_pred hHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCC
Q 007329 199 TFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGE 278 (608)
Q Consensus 199 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 278 (608)
...-+...+...|.+++|..+|++.. ......+.++ -..|++++|.++.++.. +..+|..+..++.+.|+
T Consensus 1051 d~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1051 DAPDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred cHHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCC
Confidence 23447778889999999999999852 1222223332 37789999999999774 57789999999999999
Q ss_pred hhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhh
Q 007329 279 YMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSR 358 (608)
Q Consensus 279 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 358 (608)
+++|++.|.+. -|...|..++.++.+.|++++|.+++....+.. ++..+.+.++.+|.+.+++++...+.
T Consensus 1121 ~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI-- 1190 (1630)
T 1xi4_A 1121 VKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI-- 1190 (1630)
T ss_pred HHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH--
Confidence 99999999663 477889999999999999999999999887764 55555667999999999999755553
Q ss_pred CCCCChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHH
Q 007329 359 MESKDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIAN 438 (608)
Q Consensus 359 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 438 (608)
..++...|..+...|...|++++|..+|... ..|..+...+.+.|+++.|.+.+++. .+..+|.
T Consensus 1191 -~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWk 1254 (1630)
T 1xi4_A 1191 -NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWK 1254 (1630)
T ss_pred -hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHH
Confidence 4566777888889999999999999999985 48999999999999999999999875 4568888
Q ss_pred HHHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCC-CHHHHHHHHHHHh--ccCcH
Q 007329 439 TLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKP-NSVTLVSILSACA--RIGAL 515 (608)
Q Consensus 439 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p-~~~~~~~ll~~~~--~~~~~ 515 (608)
.+-.+|...|++..|...... ...++..+..++..|.+.|.+++|+.+++..+ ++.+ ....|.-+...++ +-++.
T Consensus 1255 ev~~acve~~Ef~LA~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL-~LeraH~gmftELaiLyaKy~pekl 1332 (1630)
T 1xi4_A 1255 EVCFACVDGKEFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAAL-GLERAHMGMFTELAILYSKFKPQKM 1332 (1630)
T ss_pred HHHHHHhhhhHHHHHHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh-ccChhHhHHHHHHHHHHHhCCHHHH
Confidence 888999999999999998775 33455667789999999999999999998887 4433 3345544444444 44566
Q ss_pred HHHHHHHHHHHHhCCCC------CccHHHHHHHHhHhcCCHHHHHHHH-------------Hhc---CCCHHHHHHHHHH
Q 007329 516 MCGKEIHAHALRIGVAF------DGFLPNALLDMYVRCGRMKPAWNQF-------------NSN---ERDVSAWNILLTG 573 (608)
Q Consensus 516 ~~a~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~~~-------------~~~---~~~~~~~~~l~~~ 573 (608)
.++.++|..-. ++.+ +...|..++-.|.+.|+++.|.... +.. ..|+..|...+..
T Consensus 1333 mEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~F 1410 (1630)
T 1xi4_A 1333 REHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQF 1410 (1630)
T ss_pred HHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHH
Confidence 66666655322 2222 4677899999999999999998322 222 3467777777777
Q ss_pred HHhcC
Q 007329 574 YAERG 578 (608)
Q Consensus 574 ~~~~g 578 (608)
|....
T Consensus 1411 yl~~~ 1415 (1630)
T 1xi4_A 1411 YLEFK 1415 (1630)
T ss_pred HHhhC
Confidence 76554
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.82 E-value=9.6e-18 Score=161.83 Aligned_cols=281 Identities=12% Similarity=0.011 Sum_probs=200.7
Q ss_pred ChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHH
Q 007329 297 DFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMES---KDVVSWTTMISC 373 (608)
Q Consensus 297 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~ 373 (608)
+...+..+...+...|++++|.++++.+.+.. +.+...+..++..+...|++++|..+++++.+ .+...|..+...
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 99 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCY 99 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 44444555555555566666666666655543 33444555566666666666666666666543 345566667777
Q ss_pred HHcCC-CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHH
Q 007329 374 YEGSV-LPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDK 452 (608)
Q Consensus 374 ~~~~~-~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 452 (608)
+...| ++++|...|++..+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHH
Confidence 77777 7777777777777654 2245667777777788888888888888777665 3345556667778888888888
Q ss_pred HHHHHccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHhHhC---------CCCCHHHHHHHHHHHhccCcHHHHHH
Q 007329 453 ALEVFHQIPD---KNVISWTSIILGLRLNNRSFEALIFFRKMMLN---------LKPNSVTLVSILSACARIGALMCGKE 520 (608)
Q Consensus 453 A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~---------~~p~~~~~~~ll~~~~~~~~~~~a~~ 520 (608)
|.+.+++..+ .+...|..+...+...|++++|...++++... .+.+..++..+..++...|++++|..
T Consensus 178 A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (330)
T 3hym_B 178 AERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 257 (330)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 8888887653 34567778888888888888888888888721 13446788899999999999999999
Q ss_pred HHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHH-HhcCCHH
Q 007329 521 IHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGY-AERGQGA 581 (608)
Q Consensus 521 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~-~~~g~~~ 581 (608)
.++++.+..+. +...+..+..+|.+.|++++|.+.++++ +.+...+..+..++ ...|+.+
T Consensus 258 ~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 258 YHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 99999987655 6788889999999999999999999988 44678888888887 4556543
No 17
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.81 E-value=2.4e-15 Score=160.53 Aligned_cols=350 Identities=14% Similarity=0.087 Sum_probs=269.6
Q ss_pred CcchHHHHHHHhcCCCChhhHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHH
Q 007329 196 DVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGY--EADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGY 273 (608)
Q Consensus 196 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 273 (608)
|+.-....+++|...|.+.+|.++++..+-.+- ..+...-+.++.+..+. +..+..++.+....-+ ...+...+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Ia 1059 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIA 1059 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHH
Confidence 344456778889999999999999999884421 13445666677777776 5577777776665333 44577888
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHH
Q 007329 274 FENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGE 353 (608)
Q Consensus 274 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 353 (608)
...|.+++|..+|++.. -.....+.++. ..+++++|.++.+.. .+..+|..+..++...|++++|.
T Consensus 1060 i~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred HhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 89999999999999852 12222333332 678899999988854 35778999999999999999999
Q ss_pred HHHhhCCCCChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCc
Q 007329 354 KVFSRMESKDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISY 433 (608)
Q Consensus 354 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 433 (608)
+.|.+. .|...|..++.++.+.|++++|++.+....+.. ++....+.++.+|++.++++....+.+ .++
T Consensus 1126 dsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI~-------~~n 1194 (1630)
T 1xi4_A 1126 DSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFIN-------GPN 1194 (1630)
T ss_pred HHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHHh-------CCC
Confidence 999775 677788889999999999999999999877764 333333458899999998886554431 445
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccC
Q 007329 434 IIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIG 513 (608)
Q Consensus 434 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~ 513 (608)
...+..+...|...|++++|..+|... ..|..+..+|++.|++++|++.+++. .+..+|..+..+|...|
T Consensus 1195 ~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~~acve~~ 1264 (1630)
T 1xi4_A 1195 NAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGK 1264 (1630)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHHHHhhhh
Confidence 566777999999999999999999986 48999999999999999999999987 36689999999999999
Q ss_pred cHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc---C-CCHHHHHHHHHHHHhc--CCHHHHHHHH
Q 007329 514 ALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN---E-RDVSAWNILLTGYAER--GQGALAEEFF 587 (608)
Q Consensus 514 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~-~~~~~~~~l~~~~~~~--g~~~~A~~~~ 587 (608)
++..|...... +..++..+..++..|.+.|.+++|+.+++.. . .....|+-|...|.+. ++..++.++|
T Consensus 1265 Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f 1339 (1630)
T 1xi4_A 1265 EFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELF 1339 (1630)
T ss_pred HHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99998887653 3336677889999999999999999999887 3 2345676666666654 4555555555
Q ss_pred HH
Q 007329 588 RK 589 (608)
Q Consensus 588 ~~ 589 (608)
..
T Consensus 1340 ~~ 1341 (1630)
T 1xi4_A 1340 WS 1341 (1630)
T ss_pred HH
Confidence 53
No 18
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.81 E-value=2.7e-18 Score=164.37 Aligned_cols=220 Identities=10% Similarity=0.116 Sum_probs=60.2
Q ss_pred hcCChhhHHHHHcccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHH
Q 007329 142 KFGDLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHV 221 (608)
Q Consensus 142 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 221 (608)
+.|++++|.+.++++.+|+ +|..|+.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|...++
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik-------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK-------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc-------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 6688999999999996654 899999999999999999999964 3577799999999999999999999888
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHH
Q 007329 222 HVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTL 301 (608)
Q Consensus 222 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 301 (608)
..++. .+++.+.+.++.+|.+.|+++++.++++. ++..+|+.+...|...|.+++|...|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 77774 45577888899999999999998877753 55567777777777777777777777755 245
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHcCCCch
Q 007329 302 SSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVVSWTTMISCYEGSVLPD 381 (608)
Q Consensus 302 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 381 (608)
..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|.++
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHH
Confidence 55555555555555555555544 144555555555555555555544444333 22222223444455555555
Q ss_pred HHHHHHHHHH
Q 007329 382 KAVETYQMME 391 (608)
Q Consensus 382 ~a~~~~~~m~ 391 (608)
+|+.+++...
T Consensus 225 Eai~lLe~aL 234 (449)
T 1b89_A 225 ELITMLEAAL 234 (449)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 5555554444
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.79 E-value=1.9e-17 Score=159.67 Aligned_cols=268 Identities=11% Similarity=-0.005 Sum_probs=231.4
Q ss_pred CCCCcccchHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHH
Q 007329 329 FSDDVSVCNPLIKMYLSFGNREEGEKVFSRMES---KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASV 405 (608)
Q Consensus 329 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~l 405 (608)
.+.+..++..+...+...|++++|.++|+++.+ .+...+..++.++...|++++|..+++++.+.. +.+...+..+
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 356777888899999999999999999999865 345567778889999999999999999999864 2356788888
Q ss_pred HHHHHccC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC---CCcccHHHHHHHHHhCCCc
Q 007329 406 LSACACLG-NLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPD---KNVISWTSIILGLRLNNRS 481 (608)
Q Consensus 406 l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 481 (608)
...+...| +++.|.+.++.+.+.. +.+...+..+...+...|++++|.+.|+++.+ .+...+..+...+...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH
Confidence 89999999 9999999999998765 45677889999999999999999999998763 3457788899999999999
Q ss_pred hHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCC--------CCCccHHHHHHHHhHhcCCHHHH
Q 007329 482 FEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGV--------AFDGFLPNALLDMYVRCGRMKPA 553 (608)
Q Consensus 482 ~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--------~p~~~~~~~l~~~~~~~g~~~~A 553 (608)
++|.+.+++.....+.+...+..+...+...|++++|...++++.+... ......+..++.+|.+.|++++|
T Consensus 176 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 176 KLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999999965666788999999999999999999999999987532 23457889999999999999999
Q ss_pred HHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 554 WNQFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 554 ~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
.+.++++ +.+...|..+...|...|++++|.+.+++..+. .|+..
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~ 304 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDT 304 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCH
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCch
Confidence 9999998 557889999999999999999999999999874 77766
No 20
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=8.3e-19 Score=167.89 Aligned_cols=285 Identities=12% Similarity=0.036 Sum_probs=122.1
Q ss_pred hcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHH
Q 007329 244 KCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGY 323 (608)
Q Consensus 244 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 323 (608)
+.|++++|.++++++..+ .+|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|..+++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 557788888888887544 47788888888888888888888542 4667788888888888888888887776
Q ss_pred HHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHH
Q 007329 324 VIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIA 403 (608)
Q Consensus 324 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~ 403 (608)
..+. .+++.+.+.++.+|.+.|+++++.++++. |+..+|+.+...|...|.+++|...|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 6654 44567778888888888888887777653 66678888888888888888888888866 3677
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchH
Q 007329 404 SVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFE 483 (608)
Q Consensus 404 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 483 (608)
.+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|++++
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEE 225 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHH
Confidence 8888888888888888888766 267788888888888888888877666654 334344467788888888888
Q ss_pred HHHHHHHhHhCCCCCHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHhCCCC------CccHHHHHHHHhHhcCCHHHHHH
Q 007329 484 ALIFFRKMMLNLKPNSVTLVSILSACAR--IGALMCGKEIHAHALRIGVAF------DGFLPNALLDMYVRCGRMKPAWN 555 (608)
Q Consensus 484 A~~~~~~m~~~~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~ 555 (608)
|+.+++..+..-+-....|+-+..++++ -+++.+.++.|.. +.++.| +...|..++..|...++++.|..
T Consensus 226 ai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 226 LITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 8888888872223345555555555544 4455555554431 222222 56778889999999999998877
Q ss_pred HHHh
Q 007329 556 QFNS 559 (608)
Q Consensus 556 ~~~~ 559 (608)
..-.
T Consensus 304 tm~~ 307 (449)
T 1b89_A 304 TMMN 307 (449)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5533
No 21
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.79 E-value=1.8e-15 Score=154.34 Aligned_cols=345 Identities=13% Similarity=0.042 Sum_probs=172.7
Q ss_pred CcchHHHHHHHhcC----CCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHccCCCC-CHhHH
Q 007329 196 DVYTFPCVLRTCGG----VPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVK----CGDLVRARLVFDGMPKR-DRISW 266 (608)
Q Consensus 196 ~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~-~~~~~ 266 (608)
+...+..+...+.. .+++++|.+.|+...+.| +...+..|...|.. .++.++|.+.|++..+. ++..+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 44455555555544 566666666666666554 34455556666666 66666666666654433 45555
Q ss_pred HHHHHHHHh----cCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhh----cCChhhHHHHHHHHHHhCCCCCcccchH
Q 007329 267 NAMISGYFE----NGEYMKGLMLFIMMREVLVDPDFMTLSSVISASEL----VGDEKLGREVHGYVIKMGFSDDVSVCNP 338 (608)
Q Consensus 267 ~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 338 (608)
..|...|.. .+++++|+..|++..+.| +...+..+...+.. .++.++|.+.|+...+.| +...+..
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~ 188 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQ 188 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 555555655 556666666666665543 33444444444443 455666666666555543 3444455
Q ss_pred HHHHHHh----cCChHHHHHHHhhCCC-CChhhHHHHHHHHHc----CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007329 339 LIKMYLS----FGNREEGEKVFSRMES-KDVVSWTTMISCYEG----SVLPDKAVETYQMMEAEGSMPDEITIASVLSAC 409 (608)
Q Consensus 339 l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 409 (608)
+...|.. .++.++|.++|++..+ .+...+..+...|.. .+++++|..+|++..+.| +...+..+...+
T Consensus 189 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y 265 (490)
T 2xm6_A 189 LGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYIL 265 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 5555554 4555555555555433 333444444444443 455555555555555443 333344444444
Q ss_pred Hc----cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhc-----CCHHHHHHHHccCCC-CCcccHHHHHHHHHhCC
Q 007329 410 AC----LGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKC-----KCIDKALEVFHQIPD-KNVISWTSIILGLRLNN 479 (608)
Q Consensus 410 ~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~ 479 (608)
.. .++.++|...++...+.| +...+..+...|... ++.++|...|++..+ .+...+..+...|...|
T Consensus 266 ~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g 342 (490)
T 2xm6_A 266 EQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLG 342 (490)
T ss_dssp HHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Confidence 44 455555555555554433 223334444444443 455555555544432 22333444444444433
Q ss_pred ---CchHHHHHHHHhHhCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHh----cC
Q 007329 480 ---RSFEALIFFRKMMLNLKPNSVTLVSILSACAR----IGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVR----CG 548 (608)
Q Consensus 480 ---~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g 548 (608)
+.++|+++|++..+. .+...+..+...+.. .+++++|.+.++++.+.+ ++..+..|..+|.+ .+
T Consensus 343 ~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~ 417 (490)
T 2xm6_A 343 SEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVER 417 (490)
T ss_dssp CHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCC
Confidence 444455555544421 233444444444444 445555555555544433 23344444444444 44
Q ss_pred CHHHHHHHHHhc
Q 007329 549 RMKPAWNQFNSN 560 (608)
Q Consensus 549 ~~~~A~~~~~~~ 560 (608)
++++|.+.|+++
T Consensus 418 d~~~A~~~~~~A 429 (490)
T 2xm6_A 418 DYVQAWAWFDTA 429 (490)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 555555555444
No 22
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.78 E-value=1.5e-15 Score=154.86 Aligned_cols=351 Identities=14% Similarity=0.037 Sum_probs=204.4
Q ss_pred chhHHhHHHHHhhh----cCChhhHHHHHcccCC-CCcchHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCCCcch
Q 007329 129 SVRLGNAFLSMFVK----FGDLGHAWYVFGKMCD-RDLFSWNVLIGGYAK----AGFFDEALSLYQRMFWVGGVKPDVYT 199 (608)
Q Consensus 129 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~ 199 (608)
+...+..+...|.. .+++++|...|++..+ .+..++..|...|.. .+++++|+++|++..+.+ +...
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a 113 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG----LPQA 113 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHH
Confidence 34444555555555 5566666666655422 344455555555555 555666666666555432 2333
Q ss_pred HHHHHHHhcC----CCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHh
Q 007329 200 FPCVLRTCGG----VPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFE 275 (608)
Q Consensus 200 ~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 275 (608)
+..+...+.. .+++++|.+.|+...+.| ++..+..+...|..
T Consensus 114 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----------------------------------~~~a~~~Lg~~y~~ 159 (490)
T 2xm6_A 114 QQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG----------------------------------RDSGQQSMGDAYFE 159 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------------------------------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----------------------------------CHHHHHHHHHHHHc
Confidence 3344444433 445555555555554443 33334444444443
Q ss_pred ----cCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhh----cCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHh--
Q 007329 276 ----NGEYMKGLMLFIMMREVLVDPDFMTLSSVISASEL----VGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLS-- 345 (608)
Q Consensus 276 ----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 345 (608)
.+++++|++.|++..+.| +...+..+...+.. .++.++|.++|+...+.| +...+..+...|..
T Consensus 160 g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~ 233 (490)
T 2xm6_A 160 GDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGI 233 (490)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS
T ss_pred CCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 445555555555554432 33444444444444 455555555555555443 33344445555554
Q ss_pred --cCChHHHHHHHhhCCC-CChhhHHHHHHHHHc----CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-----C
Q 007329 346 --FGNREEGEKVFSRMES-KDVVSWTTMISCYEG----SVLPDKAVETYQMMEAEGSMPDEITIASVLSACACL-----G 413 (608)
Q Consensus 346 --~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-----~ 413 (608)
.+++++|..+|++..+ .+...+..+...|.. .+++++|+..|++..+.| +...+..+...|... +
T Consensus 234 g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~ 310 (490)
T 2xm6_A 234 GVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAK 310 (490)
T ss_dssp SSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCC
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcC
Confidence 5566666666666544 344455555555555 667777777777776654 444555566666555 6
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcC---CHHHHHHHHccCCC-CCcccHHHHHHHHHh----CCCchHHH
Q 007329 414 NLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCK---CIDKALEVFHQIPD-KNVISWTSIILGLRL----NNRSFEAL 485 (608)
Q Consensus 414 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~ 485 (608)
+.++|...++...+.+ +...+..+...|.+.| +.++|.+.|++..+ .++..+..+...|.. .+++++|+
T Consensus 311 ~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~ 387 (490)
T 2xm6_A 311 NREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAA 387 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 7777777777777654 3345555666666555 66777777776553 455667777777777 77888888
Q ss_pred HHHHHhHhCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHHHHhCCC
Q 007329 486 IFFRKMMLNLKPNSVTLVSILSACAR----IGALMCGKEIHAHALRIGVA 531 (608)
Q Consensus 486 ~~~~~m~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~ 531 (608)
+.|++..+. .+...+..+...|.. .+++++|...++++.+.+..
T Consensus 388 ~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 388 IWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 888888732 246667777777776 78888888888888887744
No 23
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.77 E-value=1.5e-15 Score=156.59 Aligned_cols=409 Identities=11% Similarity=0.013 Sum_probs=273.5
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHHH
Q 007329 159 RDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNAL 238 (608)
Q Consensus 159 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 238 (608)
.+...|..++. +.+.|++++|..+|+++.+.. +-+...|...+..+.+.|+++.|.++|+..++.. |+...|...
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~ 85 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCY 85 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHH
Confidence 36678888887 477899999999999988643 5566678888888888899999999999888764 566677766
Q ss_pred HHHH-HhcCCHHHHHH----HHccCC------CCCHhHHHHHHHHHHh---------cCChhHHHHHHHHHHHCCCCCCh
Q 007329 239 ITMY-VKCGDLVRARL----VFDGMP------KRDRISWNAMISGYFE---------NGEYMKGLMLFIMMREVLVDPDF 298 (608)
Q Consensus 239 i~~~-~~~g~~~~A~~----~~~~~~------~~~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~~~~p~~ 298 (608)
+... ...|+.++|.+ +|+... ..+...|...+....+ .|++++|..+|++..+.......
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~ 165 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIE 165 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHH
Confidence 6533 34577666654 555431 1255677777765544 57778888888877762111111
Q ss_pred hHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhh-------CC------CCC--
Q 007329 299 MTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSR-------ME------SKD-- 363 (608)
Q Consensus 299 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-------~~------~~~-- 363 (608)
..|..........|. ..+..++. .+.++++.|..++.. +. .|+
T Consensus 166 ~~~~~~~~~e~~~~~-~~~~~~l~---------------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~ 223 (530)
T 2ooe_A 166 QLWRDYNKYEEGINI-HLAKKMIE---------------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNT 223 (530)
T ss_dssp HHHHHHHHHHHHHCH-HHHHHHHH---------------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--
T ss_pred HHHHHHHHHHHhhch-hHHHHHHH---------------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCC
Confidence 222222111100110 00111110 012334444444432 11 111
Q ss_pred ------hhhHHHHHHHHHcC----CCc----hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-------cCChH------
Q 007329 364 ------VVSWTTMISCYEGS----VLP----DKAVETYQMMEAEGSMPDEITIASVLSACAC-------LGNLD------ 416 (608)
Q Consensus 364 ------~~~~~~li~~~~~~----~~~----~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~-------~~~~~------ 416 (608)
...|...+...... ++. ..+..+|++..... +-+...|..+...+.+ .|+++
T Consensus 224 ~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~ 302 (530)
T 2ooe_A 224 PQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFS 302 (530)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhh
Confidence 23454444332221 222 36777888887752 2356677777776664 68887
Q ss_pred -HHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC--CC-c-ccHHHHHHHHHhCCCchHHHHHHHHh
Q 007329 417 -LGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPD--KN-V-ISWTSIILGLRLNNRSFEALIFFRKM 491 (608)
Q Consensus 417 -~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~-~~~~~l~~~~~~~~~~~~A~~~~~~m 491 (608)
.|..+++...+.-.+.+...+..++..+.+.|++++|..+|+++.+ |+ . ..|..++..+.+.|+.++|.++|++.
T Consensus 303 ~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~A 382 (530)
T 2ooe_A 303 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 382 (530)
T ss_dssp HHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 8889998887632355678888899999999999999999998763 33 2 47888888888999999999999999
Q ss_pred HhCCCCCHHHHHHHHHH-HhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc---CC-C---
Q 007329 492 MLNLKPNSVTLVSILSA-CARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN---ER-D--- 563 (608)
Q Consensus 492 ~~~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~-~--- 563 (608)
....+.+...|...... +...|+.++|..+|+.+.+..+. ++..|..+++.+.+.|+.++|..+|+++ .| +
T Consensus 383 l~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~-~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~ 461 (530)
T 2ooe_A 383 REDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 461 (530)
T ss_dssp HTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGG
T ss_pred HhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHH
Confidence 83333334444433332 33589999999999999887543 6788899999999999999999999998 22 2
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 007329 564 -VSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWR 598 (608)
Q Consensus 564 -~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 598 (608)
...|...+......|+.+.+..+++++.+. .|+
T Consensus 462 ~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~--~p~ 495 (530)
T 2ooe_A 462 SGEIWARFLAFESNIGDLASILKVEKRRFTA--FRE 495 (530)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH--THH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Cch
Confidence 448989899888999999999999999875 553
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.77 E-value=1.2e-17 Score=164.01 Aligned_cols=254 Identities=10% Similarity=-0.022 Sum_probs=181.4
Q ss_pred ccchHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007329 334 SVCNPLIKMYLSFGNREEGEKVFSRMES---KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACA 410 (608)
Q Consensus 334 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 410 (608)
..+..+...+.+.|++++|...|+++.+ .+...|..+..+|...|++++|+..|+++.+.. +.+..++..+...+.
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFT 143 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 4455556666666666666666665543 244556666666666666666666666666543 224556666666666
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHH----------------HHHHHhHhcCCHHHHHHHHccCCC--C---CcccHH
Q 007329 411 CLGNLDLGIKLHQLAMRTGLISYIIIAN----------------TLIDMYSKCKCIDKALEVFHQIPD--K---NVISWT 469 (608)
Q Consensus 411 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~----------------~li~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~ 469 (608)
..|++++|...++.+.+.... +...+. .+...+ ..|++++|...|+++.+ | +...|.
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 221 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQC 221 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHH
Confidence 677777777777666654422 111111 222333 77888888888887652 3 356788
Q ss_pred HHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCC
Q 007329 470 SIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGR 549 (608)
Q Consensus 470 ~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 549 (608)
.+...+...|++++|+..|+++....+.+..++..+...+...|++++|...++++.+..+. +...+..++.+|.+.|+
T Consensus 222 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~ 300 (368)
T 1fch_A 222 GLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGA 300 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCC
Confidence 88888899999999999999888445556788889999999999999999999998887654 56788889999999999
Q ss_pred HHHHHHHHHhc----CCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007329 550 MKPAWNQFNSN----ERD-----------VSAWNILLTGYAERGQGALAEEFFRKMI 591 (608)
Q Consensus 550 ~~~A~~~~~~~----~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 591 (608)
+++|.+.++++ +.+ ..+|..+..+|...|++++|..++++.+
T Consensus 301 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 301 HREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 99999999887 333 6789999999999999999998877543
No 25
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.76 E-value=1.1e-17 Score=164.09 Aligned_cols=297 Identities=12% Similarity=0.016 Sum_probs=193.9
Q ss_pred HHhcCCHHHHHH-HHccCCCC-------CHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCC
Q 007329 242 YVKCGDLVRARL-VFDGMPKR-------DRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGD 313 (608)
Q Consensus 242 ~~~~g~~~~A~~-~~~~~~~~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 313 (608)
+...|++++|.. .+++.... +...+..+...+.+.|++++|...|+++.+.. +.+...+..+...+...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 344577777777 77654431 24456677777888888888888888877653 2345566666677777777
Q ss_pred hhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCC--CC-hhhHHHHHHHHHcCCCchHHHHHHHHH
Q 007329 314 EKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMES--KD-VVSWTTMISCYEGSVLPDKAVETYQMM 390 (608)
Q Consensus 314 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m 390 (608)
+++|...++.+.+.. +.+..++..+...|...|++++|.+.++++.. |+ ...+..+...
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~----------------- 175 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEG----------------- 175 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC----------------------
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH-----------------
Confidence 777777777776654 33455555566666666666666665555433 11 1111000000
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCC-chhHHHHHHHHhHhcCCHHHHHHHHccCC---CCCcc
Q 007329 391 EAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLIS-YIIIANTLIDMYSKCKCIDKALEVFHQIP---DKNVI 466 (608)
Q Consensus 391 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~ 466 (608)
.. ...+. ..+. .+..+...|++++|...++.+.+..... +..++..+...|.+.|++++|...|+++. ..+..
T Consensus 176 ~~-~~~~~-~~~~-~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 252 (368)
T 1fch_A 176 AG-GAGLG-PSKR-ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYL 252 (368)
T ss_dssp ------------C-TTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred hh-hhccc-HHHH-HHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHH
Confidence 00 00000 0111 2333337788888888888888765322 56778888888888888888888888765 23457
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCC----------CccH
Q 007329 467 SWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAF----------DGFL 536 (608)
Q Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p----------~~~~ 536 (608)
.|..+...+...|++++|++.|+++....+.+...+..+..++.+.|++++|...++++.+..+.. ...+
T Consensus 253 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 332 (368)
T 1fch_A 253 LWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENI 332 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHH
Confidence 888889999999999999999999985455678889999999999999999999999988764432 1578
Q ss_pred HHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 537 PNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 537 ~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
|..++.+|.+.|++++|..++++.
T Consensus 333 ~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 333 WSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHHHHHHHHHhCChHhHHHhHHHH
Confidence 889999999999999999887653
No 26
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=2e-15 Score=141.77 Aligned_cols=251 Identities=13% Similarity=0.029 Sum_probs=200.9
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCCh----hhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 007329 340 IKMYLSFGNREEGEKVFSRMESKDV----VSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNL 415 (608)
Q Consensus 340 ~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 415 (608)
+.-....|+++.|+..++.....+. .....+.++|...|+++.|+..++. .-.|+..++..+...+...++.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcH
Confidence 3445667899999999888766332 2445567899999999999987654 2356777888888999999999
Q ss_pred HHHHHHHHHHHHhCCCC-chhHHHHHHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHhC
Q 007329 416 DLGIKLHQLAMRTGLIS-YIIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLN 494 (608)
Q Consensus 416 ~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 494 (608)
+.|.+.++.+...+..| +...+..+..++.+.|++++|++.+++ ..+...+..++..+.+.|++++|.+.|+++...
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 159 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ 159 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 99999999998876544 556667777889999999999999998 456778888999999999999999999999832
Q ss_pred CCCCHH-HH--HHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHH
Q 007329 495 LKPNSV-TL--VSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAW 567 (608)
Q Consensus 495 ~~p~~~-~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~ 567 (608)
.|+.. .. ..++..+...|++++|..+++++.+..+. +...++.++.+|.+.|++++|.+.++++ +.++.+|
T Consensus 160 -~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l 237 (291)
T 3mkr_A 160 -DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSP-TLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL 237 (291)
T ss_dssp -CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred -CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 35432 11 22334445568999999999999988544 7888999999999999999999999997 5578899
Q ss_pred HHHHHHHHhcCCHHH-HHHHHHHHHHcCCCCCch
Q 007329 568 NILLTGYAERGQGAL-AEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 568 ~~l~~~~~~~g~~~~-A~~~~~~m~~~g~~p~~~ 600 (608)
..++..+...|+.++ +.++++++++. .|++.
T Consensus 238 ~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~ 269 (291)
T 3mkr_A 238 INLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHP 269 (291)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCCh
Confidence 999999999999876 67899999885 77775
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.74 E-value=7.1e-17 Score=158.22 Aligned_cols=252 Identities=10% Similarity=-0.051 Sum_probs=168.7
Q ss_pred chHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 007329 336 CNPLIKMYLSFGNREEGEKVFSRMES---KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACL 412 (608)
Q Consensus 336 ~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 412 (608)
+..+...+.+.|++++|..+|+++.+ .+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+...
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 146 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNT 146 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHcc
Confidence 44445555555555555555555432 234455566666666666666666666665543 22355666666666666
Q ss_pred CChHHHHHHHHHHHHhCCCC---------chhHHHHHHHHhHhcCCHHHHHHHHccCCC--C---CcccHHHHHHHHHhC
Q 007329 413 GNLDLGIKLHQLAMRTGLIS---------YIIIANTLIDMYSKCKCIDKALEVFHQIPD--K---NVISWTSIILGLRLN 478 (608)
Q Consensus 413 ~~~~~a~~~~~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~l~~~~~~~ 478 (608)
|++++|...++.+.+..... ....+..+...+.+.|++++|.+.|+++.+ | +...|..+...+...
T Consensus 147 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~ 226 (365)
T 4eqf_A 147 SHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLS 226 (365)
T ss_dssp TCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHC
Confidence 66666666666665533110 122233456677778888888888877652 2 456778888888888
Q ss_pred CCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHH
Q 007329 479 NRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFN 558 (608)
Q Consensus 479 ~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 558 (608)
|++++|++.|+++....+.+..++..+..++...|++++|...++++.+..+. +...+..++.+|.+.|++++|.+.++
T Consensus 227 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 305 (365)
T 4eqf_A 227 GEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYREAVSNFL 305 (365)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 88888888888888555667888888899999999999999999988887654 57778888899999999999999998
Q ss_pred hc---CC-------------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007329 559 SN---ER-------------DVSAWNILLTGYAERGQGALAEEFFRK 589 (608)
Q Consensus 559 ~~---~~-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 589 (608)
++ .| +...|..+..++...|+.+.+..+.++
T Consensus 306 ~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 306 TALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 87 22 256889999999999999888777654
No 28
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.74 E-value=5.9e-15 Score=152.12 Aligned_cols=415 Identities=10% Similarity=0.038 Sum_probs=270.0
Q ss_pred HHHHHHhcCCcchhHHhHHHHHhhhcCChhhHHHHHcccCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 007329 118 HSVVSKTMSHLSVRLGNAFLSMFVKFGDLGHAWYVFGKMCD--R-DLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVK 194 (608)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 194 (608)
++..++..+ -+...|..++. +.+.|++++|..+|+++.+ | +...|..++..+.+.|++++|.++|++..+. .
T Consensus 2 le~al~~~P-~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~---~ 76 (530)
T 2ooe_A 2 AEKKLEENP-YDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK---V 76 (530)
T ss_dssp HHHHHHHCT-TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT---C
T ss_pred hhhHhhhCC-CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---C
Confidence 344445443 36778888888 4788999999999999954 3 5567899999999999999999999999864 4
Q ss_pred CCcchHHHHHHHh-cCCCChhhHHH----HHHHHHHh-CCCC-chhHHHHHHHHHHh---------cCCHHHHHHHHccC
Q 007329 195 PDVYTFPCVLRTC-GGVPDLKRGKE----VHVHVIRF-GYEA-DVDVVNALITMYVK---------CGDLVRARLVFDGM 258 (608)
Q Consensus 195 p~~~~~~~ll~~~-~~~~~~~~a~~----~~~~~~~~-g~~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~~ 258 (608)
|+...|...+... ...|+.+.|.+ +|+..++. |..| +...|...+....+ .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 6777776666433 35677777765 67766654 5544 46678877776655 68999999999987
Q ss_pred CCC-C---HhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHh--C----
Q 007329 259 PKR-D---RISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKM--G---- 328 (608)
Q Consensus 259 ~~~-~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~---- 328 (608)
.+. + ...|..........|. .+...++. ...++++.|..++...... +
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~ 214 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRN 214 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSS
T ss_pred HhchhhhHHHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccc
Confidence 652 1 1233322221100010 00011110 0123334444444332110 0
Q ss_pred ---CCCCc--------ccchHHHHHHHhc----CCh----HHHHHHHhhCCC---CChhhHHHHHHHHHc-------CCC
Q 007329 329 ---FSDDV--------SVCNPLIKMYLSF----GNR----EEGEKVFSRMES---KDVVSWTTMISCYEG-------SVL 379 (608)
Q Consensus 329 ---~~~~~--------~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~---~~~~~~~~li~~~~~-------~~~ 379 (608)
++|+. ..|...+...... ++. +.+..+|++... .+...|..+...+.+ .|+
T Consensus 215 ~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~ 294 (530)
T 2ooe_A 215 APSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGD 294 (530)
T ss_dssp SCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccc
Confidence 12221 1222222211111 121 255556666554 345667666666654 677
Q ss_pred ch-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCc-hhHHHHHHHHhHhcCCHH
Q 007329 380 PD-------KAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISY-IIIANTLIDMYSKCKCID 451 (608)
Q Consensus 380 ~~-------~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~ 451 (608)
++ +|..+|++..+.-.+-+...+..++..+.+.|+++.|..+++.+.+.. +.+ ...|..++..+.+.|+++
T Consensus 295 ~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~ 373 (530)
T 2ooe_A 295 MNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIK 373 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHH
Confidence 76 788888888752122346677777888888888888888888888743 222 247778888888888889
Q ss_pred HHHHHHccCCCCCcc---cHHHHHH-HHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 007329 452 KALEVFHQIPDKNVI---SWTSIIL-GLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALR 527 (608)
Q Consensus 452 ~A~~~~~~~~~~~~~---~~~~l~~-~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 527 (608)
+|.++|++..+.... .|...+. .+...|+.++|..+|++.+...+.+...+..++..+.+.|+.++|..+++++..
T Consensus 374 ~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~ 453 (530)
T 2ooe_A 374 SGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 453 (530)
T ss_dssp HHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHh
Confidence 999888877643222 2222221 233689999999999999844455788899999999999999999999999988
Q ss_pred hCCC-CC--ccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 528 IGVA-FD--GFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 528 ~~~~-p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
.+.. |+ ...|...+......|+.+.+..+.+++
T Consensus 454 ~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 454 SGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp SCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7543 22 337777888888899999999998887
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.72 E-value=3e-16 Score=151.02 Aligned_cols=253 Identities=11% Similarity=0.024 Sum_probs=170.1
Q ss_pred hHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 007329 337 NPLIKMYLSFGNREEGEKVFSRMES---KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLG 413 (608)
Q Consensus 337 ~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 413 (608)
..+...+...|++++|..+|+++.+ .+...|..+...+...|++++|...++++.+.. +.+..++..+...+...|
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~ 103 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEH 103 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcC
Confidence 3444444555555555555544432 233445555555555666666666666555542 224455555566666666
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHH--------------HH-HhHhcCCHHHHHHHHccCCC---CCcccHHHHHHHH
Q 007329 414 NLDLGIKLHQLAMRTGLISYIIIANTL--------------ID-MYSKCKCIDKALEVFHQIPD---KNVISWTSIILGL 475 (608)
Q Consensus 414 ~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 475 (608)
++++|.+.++.+.+.. +.+...+..+ .. .+...|++++|.+.++++.+ .+...+..+...+
T Consensus 104 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 182 (327)
T 3cv0_A 104 NANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLY 182 (327)
T ss_dssp CHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 6666666666655543 1112222222 22 36677778888888777652 3556777888888
Q ss_pred HhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHH
Q 007329 476 RLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWN 555 (608)
Q Consensus 476 ~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 555 (608)
...|++++|++.++++....+.+..++..+...+...|++++|.+.++++.+..+. +...+..++.+|.+.|++++|.+
T Consensus 183 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~ 261 (327)
T 3cv0_A 183 NLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG-YVRVMYNMAVSYSNMSQYDLAAK 261 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhccHHHHHH
Confidence 88888888888888888445556788888888999999999999999988887654 56778888999999999999999
Q ss_pred HHHhc---CC-------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007329 556 QFNSN---ER-------------DVSAWNILLTGYAERGQGALAEEFFRKMID 592 (608)
Q Consensus 556 ~~~~~---~~-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 592 (608)
.++++ .| +...|..+..++...|++++|..++++.++
T Consensus 262 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 262 QLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99887 33 367888999999999999999988876543
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.71 E-value=3.3e-16 Score=147.14 Aligned_cols=221 Identities=11% Similarity=0.017 Sum_probs=171.1
Q ss_pred hHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCh
Q 007329 337 NPLIKMYLSFGNREEGEKVFSRMESKDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPD-EITIASVLSACACLGNL 415 (608)
Q Consensus 337 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~ 415 (608)
..+..+|...|+++.|...++....++..++..+...+...++.++|++.++++...+..|+ ...+..+...+...|++
T Consensus 38 ~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~ 117 (291)
T 3mkr_A 38 VFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNP 117 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCH
Confidence 44567788888888888777765556667778888888888888999999998888765564 44555566788888999
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC--CCcccH---HHHHHHHHhCCCchHHHHHHHH
Q 007329 416 DLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPD--KNVISW---TSIILGLRLNNRSFEALIFFRK 490 (608)
Q Consensus 416 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~---~~l~~~~~~~~~~~~A~~~~~~ 490 (608)
++|.+.++. +.+...+..++.+|.+.|++++|.+.|+++.+ |+.... ...+..+...|++++|+.+|++
T Consensus 118 ~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~ 191 (291)
T 3mkr_A 118 DAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQE 191 (291)
T ss_dssp HHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred HHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 999988876 46677888888888999999999998888763 443211 1223334456889999999999
Q ss_pred hHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHH-HHHHHHhc---CCCH
Q 007329 491 MMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKP-AWNQFNSN---ERDV 564 (608)
Q Consensus 491 m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~---~~~~ 564 (608)
+....+.+...++.+..++.+.|++++|...++++.+..+. ++.++..++..+...|+.++ +.++++++ .|+.
T Consensus 192 ~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~ 268 (291)
T 3mkr_A 192 MADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG-HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSH 268 (291)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC
T ss_pred HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCC
Confidence 98556778888999999999999999999999999988765 77788889999999999876 56788776 5543
No 31
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.71 E-value=4.4e-16 Score=152.55 Aligned_cols=272 Identities=10% Similarity=-0.028 Sum_probs=168.7
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHH
Q 007329 262 DRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIK 341 (608)
Q Consensus 262 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 341 (608)
+...|..+...+.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 34457777777777777777777777776643 2245566666666666777777777776666553 334445555555
Q ss_pred HHHhcCChHHHHHHHhhCCCCCh---hhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHH
Q 007329 342 MYLSFGNREEGEKVFSRMESKDV---VSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLG 418 (608)
Q Consensus 342 ~~~~~~~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 418 (608)
.|...|++++|...|+++.+.+. ..+..+ ......+..+...+...|++++|
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~-------------------------~~~~~~~~~l~~~~~~~g~~~~A 196 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNK-------------------------KGSPGLTRRMSKSPVDSSVLEGV 196 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC--------------------------------------------CCHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhh-------------------------ccchHHHHHHHHHHhhhhhHHHH
Confidence 55555555555555555433110 001000 00112233345556666666666
Q ss_pred HHHHHHHHHhCCC-CchhHHHHHHHHhHhcCCHHHHHHHHccCC---CCCcccHHHHHHHHHhCCCchHHHHHHHHhHhC
Q 007329 419 IKLHQLAMRTGLI-SYIIIANTLIDMYSKCKCIDKALEVFHQIP---DKNVISWTSIILGLRLNNRSFEALIFFRKMMLN 494 (608)
Q Consensus 419 ~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 494 (608)
...++.+.+.... .+..++..+...|.+.|++++|.+.|+++. ..+...|..+..+|.+.|++++|++.|+++...
T Consensus 197 ~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 276 (365)
T 4eqf_A 197 KELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI 276 (365)
T ss_dssp HHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 6666666655422 145566666666666677777776666654 234567777788888888888888888888744
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCC-----------CCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 495 LKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVA-----------FDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 495 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----------p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
.+.+..++..+..++...|++++|...++++.+..+. .+..+|..+..++...|+.+.|..+.++.
T Consensus 277 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 277 QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 4556778888888888888888888888888765432 13678889999999999999998887653
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.70 E-value=6e-16 Score=148.94 Aligned_cols=272 Identities=10% Similarity=-0.038 Sum_probs=182.1
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHH
Q 007329 264 ISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMY 343 (608)
Q Consensus 264 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 343 (608)
..|..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+...+
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 345566667777777777777777776642 2244555566666666666777766666666553 33344444555555
Q ss_pred HhcCChHHHHHHHhhCCC--C-ChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHccCChHHH
Q 007329 344 LSFGNREEGEKVFSRMES--K-DVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLS--ACACLGNLDLG 418 (608)
Q Consensus 344 ~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~--~~~~~~~~~~a 418 (608)
...|++++|.+.++++.+ | +...+..+.. ..|+......+.. .+...|++++|
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~A 157 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQ----------------------ADVDIDDLNVQSEDFFFAAPNEYREC 157 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC------------------------------------------CCTTSHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhH----------------------HHHHHHHHHHHHHhHHHHHcccHHHH
Confidence 555555555555544432 1 1111111100 0011111111112 26677788888
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCC---CCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCC
Q 007329 419 IKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIP---DKNVISWTSIILGLRLNNRSFEALIFFRKMMLNL 495 (608)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~ 495 (608)
...++.+.+.. +.+...+..+...|.+.|++++|.+.++++. ..+...|..+...+...|++++|++.++++....
T Consensus 158 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 236 (327)
T 3cv0_A 158 RTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN 236 (327)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 88888887765 4467777888888888888888888888765 2345678888899999999999999999988555
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCC-----------CccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 496 KPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAF-----------DGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 496 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
+.+..++..+...+...|++++|.+.++++.+..+.. +...+..+..+|.+.|++++|..++++.
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 237 PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 5678889999999999999999999999998765543 4667888999999999999999998765
No 33
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.69 E-value=1.8e-17 Score=171.27 Aligned_cols=148 Identities=15% Similarity=0.104 Sum_probs=124.3
Q ss_pred chhHHhHHHHHhhhcCChhhHHHHHccc-------CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHH
Q 007329 129 SVRLGNAFLSMFVKFGDLGHAWYVFGKM-------CDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFP 201 (608)
Q Consensus 129 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 201 (608)
-..+||++|++|++.|++++|.++|++| ..||+++||+||++|++.|++++|.++|++|.+.| +.||..||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G-~~PDvvTYn 204 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG-LTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-CCCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCcHHHHH
Confidence 3568999999999999999999999776 46899999999999999999999999999999888 999999999
Q ss_pred HHHHHhcCCCCh-hhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCC-----CHhHHHHHHHHHHh
Q 007329 202 CVLRTCGGVPDL-KRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKR-----DRISWNAMISGYFE 275 (608)
Q Consensus 202 ~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~ 275 (608)
++|.++++.|+. ++|.++|++|.+.|+.||..+|+.++....+.+-++.+.++...+..+ .+.+...|.+.|.+
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~ 284 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAK 284 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCC
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHcc
Confidence 999999999985 789999999999999999999999999888876666665555444432 12233444555554
Q ss_pred cC
Q 007329 276 NG 277 (608)
Q Consensus 276 ~~ 277 (608)
.+
T Consensus 285 d~ 286 (1134)
T 3spa_A 285 DG 286 (1134)
T ss_dssp CS
T ss_pred CC
Confidence 44
No 34
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.68 E-value=3e-17 Score=169.67 Aligned_cols=147 Identities=10% Similarity=0.007 Sum_probs=119.2
Q ss_pred cccchHHHHHHHhcCChHHHHHHHhhCC-------CCChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHH
Q 007329 333 VSVCNPLIKMYLSFGNREEGEKVFSRME-------SKDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASV 405 (608)
Q Consensus 333 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~l 405 (608)
..+||+||++|++.|++++|.++|++|. .||++|||+||.+||+.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4578888888888888888888886653 389999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCh-HHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCC-----CcccHHHHHHHHHhCC
Q 007329 406 LSACACLGNL-DLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDK-----NVISWTSIILGLRLNN 479 (608)
Q Consensus 406 l~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~ 479 (608)
|.++++.|+. +.|.++|++|.+.|+.||..+|++++..+.+.+-++.+.++...+..+ .+.+-..|.+.|.+.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 9999999985 789999999999999999999999998877766555555554444421 1233444555565544
No 35
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.66 E-value=3.4e-14 Score=144.43 Aligned_cols=367 Identities=11% Similarity=-0.037 Sum_probs=196.4
Q ss_pred CcchHHHHHHHhcCCCChhhHHHHHHHHHHh-----C---CCCchhHHHHHHHHHHhcCCHHHHHHHHccCCC-------
Q 007329 196 DVYTFPCVLRTCGGVPDLKRGKEVHVHVIRF-----G---YEADVDVVNALITMYVKCGDLVRARLVFDGMPK------- 260 (608)
Q Consensus 196 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------- 260 (608)
....|+.+...+...|+.++|.+.|++.++. + .+....+|+.+..+|...|++++|...+++..+
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3456777777777788888888877776542 1 122345677777777777777777766654421
Q ss_pred ----CCHhHHHHHHHHHHhc--CChhHHHHHHHHHHHCCCCCCh-hHHHHHHHH---HhhcCChhhHHHHHHHHHHhCCC
Q 007329 261 ----RDRISWNAMISGYFEN--GEYMKGLMLFIMMREVLVDPDF-MTLSSVISA---SELVGDEKLGREVHGYVIKMGFS 330 (608)
Q Consensus 261 ----~~~~~~~~li~~~~~~--~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~ 330 (608)
....++..+..++.+. +++++|++.|++..+. .|+. ..+..+... +...++.++|.+.++..++.. +
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 1234455544444443 3567777777776654 3332 222222222 334556666666666666553 2
Q ss_pred CCcccchHHHHHHHh----cCChHHHHHHHhhCCC---CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHH
Q 007329 331 DDVSVCNPLIKMYLS----FGNREEGEKVFSRMES---KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIA 403 (608)
Q Consensus 331 ~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~ 403 (608)
.+..++..+...+.. .|++++|.+++++... .+...+..+...|...|++++|+..+++..+... -+...+.
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~ 285 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP-NNAYLHC 285 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-ChHHHHH
Confidence 333344444333333 2445566666655432 3444555566666666666666666666655421 1233333
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCC---CCCcccHHHHHHHHHhCCC
Q 007329 404 SVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIP---DKNVISWTSIILGLRLNNR 480 (608)
Q Consensus 404 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~ 480 (608)
.+...|...+... .... . ..........+..+.|...+++.. ..+...+..+...+...|+
T Consensus 286 ~lg~~y~~~~~~~---------~~~~-~------~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~ 349 (472)
T 4g1t_A 286 QIGCCYRAKVFQV---------MNLR-E------NGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQ 349 (472)
T ss_dssp HHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHh---------hhHH-H------HHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhcc
Confidence 3333332110000 0000 0 000000111223566777666554 3456788899999999999
Q ss_pred chHHHHHHHHhHhCCCCCHH----HHHHHHH-HHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHH
Q 007329 481 SFEALIFFRKMMLNLKPNSV----TLVSILS-ACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWN 555 (608)
Q Consensus 481 ~~~A~~~~~~m~~~~~p~~~----~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 555 (608)
+++|++.|++.+.. .|+.. .+..+.. .....|++++|+..++++.+..+. .... .+..+.+.+
T Consensus 350 ~~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~--~~~~---------~~~~~~l~~ 417 (472)
T 4g1t_A 350 YEEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK--SREK---------EKMKDKLQK 417 (472)
T ss_dssp HHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCC--CHHH---------HHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc--cHHH---------HHHHHHHHH
Confidence 99999999998832 23322 2223322 345678999999999998875443 2221 222334445
Q ss_pred HHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 007329 556 QFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKMIDSK 594 (608)
Q Consensus 556 ~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 594 (608)
++++. +.+..+|..|...|...|++++|++.|++.++.|
T Consensus 418 ~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 418 IAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 55544 5578899999999999999999999999998865
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.66 E-value=5.9e-14 Score=142.60 Aligned_cols=371 Identities=10% Similarity=-0.021 Sum_probs=243.2
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhc----CC---CCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhC-----
Q 007329 160 DLFSWNVLIGGYAKAGFFDEALSLYQRMFWV----GG---VKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFG----- 227 (608)
Q Consensus 160 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g----- 227 (608)
....||.|...+...|++++|++.|++..+. .+ -+....+|+.+..+|...|++++|...+++..+..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3567999999999999999999999987642 10 12234578899999999999999999999887631
Q ss_pred -CC-CchhHHHHHHHHHHhc--CCHHHHHHHHccCCC---CCHhHHHHHHHH---HHhcCChhHHHHHHHHHHHCCCCCC
Q 007329 228 -YE-ADVDVVNALITMYVKC--GDLVRARLVFDGMPK---RDRISWNAMISG---YFENGEYMKGLMLFIMMREVLVDPD 297 (608)
Q Consensus 228 -~~-~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~---~~~~~~~~li~~---~~~~~~~~~a~~~~~~m~~~~~~p~ 297 (608)
.. ....++..+..++.+. +++++|...|++..+ .++..+..+... +...++.++|++.+++..+... .+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p-~~ 208 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP-DN 208 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-SC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-cc
Confidence 11 1245566665566554 579999999998753 355566655554 4456788899999998877532 23
Q ss_pred hhHHHHHHHHHh----hcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCC--C-ChhhHHHH
Q 007329 298 FMTLSSVISASE----LVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMES--K-DVVSWTTM 370 (608)
Q Consensus 298 ~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l 370 (608)
...+..+...+. ..++.++|.+.++...... +.+..++..+...|...|++++|...+++..+ | +...+..+
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 287 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHH
Confidence 444544444443 3567889999999988875 55677888999999999999999999998765 3 45566666
Q ss_pred HHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCH
Q 007329 371 ISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCI 450 (608)
Q Consensus 371 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 450 (608)
..+|...+. ...... ...........+..+.|...++...+.. +.+...+..+...|.+.|++
T Consensus 288 g~~y~~~~~---------~~~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~ 350 (472)
T 4g1t_A 288 GCCYRAKVF---------QVMNLR-------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQY 350 (472)
T ss_dssp HHHHHHHHH---------HHHHC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCH
T ss_pred HHHHHHHHH---------HhhhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccH
Confidence 665533211 011110 0000001111233567788888777765 44566677888899999999
Q ss_pred HHHHHHHccCCC--CCcc----cHHHHHH-HHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 007329 451 DKALEVFHQIPD--KNVI----SWTSIIL-GLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHA 523 (608)
Q Consensus 451 ~~A~~~~~~~~~--~~~~----~~~~l~~-~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 523 (608)
++|.+.|++..+ ++.. .+..+.. .+.+.|+.++|++.|++.+ .+.|+..... +....+.++++
T Consensus 351 ~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal-~i~~~~~~~~---------~~~~~l~~~~~ 420 (472)
T 4g1t_A 351 EEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV-KINQKSREKE---------KMKDKLQKIAK 420 (472)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH-HSCCCCHHHH---------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcCcccHHHH---------HHHHHHHHHHH
Confidence 999999987652 3222 1222222 3457889999999999988 4445433222 22344556667
Q ss_pred HHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 524 HALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 524 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
...+.++. +..+|..|+.+|...|++++|.+.|+++
T Consensus 421 ~~l~~~p~-~~~~~~~LG~~~~~~g~~~~A~~~y~kA 456 (472)
T 4g1t_A 421 MRLSKNGA-DSEALHVLAFLQELNEKMQQADEDSERG 456 (472)
T ss_dssp HHHHHCC--CTTHHHHHHHHHHHHHHCC---------
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77766655 7889999999999999999999999988
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=7.9e-15 Score=135.71 Aligned_cols=235 Identities=11% Similarity=-0.072 Sum_probs=187.4
Q ss_pred hhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC--Cc----hhHHH
Q 007329 365 VSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLI--SY----IIIAN 438 (608)
Q Consensus 365 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~ 438 (608)
..|..+...+...|++++|+..|++..+.. .+...+..+...+...|++++|...++.+.+.... ++ ...+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 456677778888888888888888888776 67788888888888899999999888887764311 11 57778
Q ss_pred HHHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHH
Q 007329 439 TLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCG 518 (608)
Q Consensus 439 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a 518 (608)
.+...|.+.|++++|.+.|++..+-+.. ...+...|++++|.+.++++....+.+...+..+...+...|++++|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 158 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNA 158 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHH
Confidence 8888888999999999988877632111 24567778899999999998854455667888899999999999999
Q ss_pred HHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 007329 519 KEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKMIDSK 594 (608)
Q Consensus 519 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 594 (608)
...++++.+..+. +...+..++.+|.+.|++++|.+.++++ +.+...|..+...+...|++++|.+.+++..+..
T Consensus 159 ~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 159 VKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 9999999987765 6778889999999999999999999988 4568889999999999999999999999998752
Q ss_pred ----CCCCch--hhhhccc
Q 007329 595 ----GNWRKL--MGLFRKC 607 (608)
Q Consensus 595 ----~~p~~~--~~~~~ac 607 (608)
..|+.. ...+..|
T Consensus 238 ~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 238 AEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHTTTTHHHHHHHHHHT
T ss_pred hhhcCCCchHHHHHHHHHh
Confidence 116655 4444444
No 38
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.58 E-value=8.6e-13 Score=132.31 Aligned_cols=366 Identities=9% Similarity=-0.014 Sum_probs=219.3
Q ss_pred hcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH---HHHHHHHccCCCCCHhHHHHHHHHHHhcC-----C
Q 007329 207 CGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDL---VRARLVFDGMPKRDRISWNAMISGYFENG-----E 278 (608)
Q Consensus 207 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~~-----~ 278 (608)
+.+.|++++|.++|+...+.| +...+..|...|...|+. ++|...|++..+.++..+..+...+...+ +
T Consensus 13 ~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~ 89 (452)
T 3e4b_A 13 ALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAE 89 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHH
T ss_pred HHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcC
Confidence 334444555555555544443 122223333444445555 66666666665555555555555444444 5
Q ss_pred hhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCCh---hhHHHHHHHHHHhCCCCCcccchHHHHHHHhcC----ChHH
Q 007329 279 YMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDE---KLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFG----NREE 351 (608)
Q Consensus 279 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~ 351 (608)
+++|+..|++..+.|... .+..+...|...+.. ..+.+.+......| +......+...|...+ ..+.
T Consensus 90 ~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~ 163 (452)
T 3e4b_A 90 HHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDD 163 (452)
T ss_dssp HHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHH
T ss_pred HHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHH
Confidence 667777777777765332 344444444433322 34555555555554 3455666777777776 3455
Q ss_pred HHHHHhhCCCCChhhHHHHHHHHHcCC---CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc----CChHHHHHHHHH
Q 007329 352 GEKVFSRMESKDVVSWTTMISCYEGSV---LPDKAVETYQMMEAEGSMPDEITIASVLSACACL----GNLDLGIKLHQL 424 (608)
Q Consensus 352 a~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~----~~~~~a~~~~~~ 424 (608)
+..+++.....+...+..+...|...| +.++|+..|++..+.| .++...+..+...|... +++++|..+|+.
T Consensus 164 a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~ 242 (452)
T 3e4b_A 164 VERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEK 242 (452)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHH
Confidence 556666666666668888888888888 8889999999888887 44555556666666554 688899998888
Q ss_pred HHHhCCCCchhHHHHHHHH-h--HhcCCHHHHHHHHccCCCC-CcccHHHHHHHHHhCC-----CchHHHHHHHHhHhCC
Q 007329 425 AMRTGLISYIIIANTLIDM-Y--SKCKCIDKALEVFHQIPDK-NVISWTSIILGLRLNN-----RSFEALIFFRKMMLNL 495 (608)
Q Consensus 425 ~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~~-----~~~~A~~~~~~m~~~~ 495 (608)
.. . -+...+..|..+ | ...++.++|.+.|++..+. +...+..+...|. .| ++++|++.|++..
T Consensus 243 aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa--- 314 (452)
T 3e4b_A 243 IA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV--- 314 (452)
T ss_dssp HG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---
T ss_pred Hc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---
Confidence 76 3 344555566655 3 4578999999999877643 5566777777776 44 8889999998875
Q ss_pred CCCHHHHHHHHHHHhc----cCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHh----cCCHHHHHHHHHhc--CCCHH
Q 007329 496 KPNSVTLVSILSACAR----IGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVR----CGRMKPAWNQFNSN--ERDVS 565 (608)
Q Consensus 496 ~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~--~~~~~ 565 (608)
+-+...+..|...|.. ..++++|...+++..+.| +......|..+|.. ..+.++|...++.. ..+..
T Consensus 315 ~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~ 391 (452)
T 3e4b_A 315 GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE 391 (452)
T ss_dssp TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH
T ss_pred CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH
Confidence 5567777777777766 348999999999988876 45566677777764 45899999999888 33333
Q ss_pred HHHHHHHH--HHhcCCHHHHHHHHHHHHHc
Q 007329 566 AWNILLTG--YAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 566 ~~~~l~~~--~~~~g~~~~A~~~~~~m~~~ 593 (608)
.-..+-.. ....++.++|..+.++..+.
T Consensus 392 a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 392 ANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 33333222 23344667788887776554
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.57 E-value=6.2e-14 Score=125.67 Aligned_cols=204 Identities=13% Similarity=0.008 Sum_probs=120.6
Q ss_pred hhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 007329 364 VVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDM 443 (608)
Q Consensus 364 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 443 (608)
...+..+...+.+.|++++|+..|++..+.. +.+...+..+...+.+.|++++|...++...+.. +.+...+..+..+
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEA 82 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3445555556666666666666666665543 1234555555555666666666666666555544 3334444444444
Q ss_pred hHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 007329 444 YSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHA 523 (608)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 523 (608)
+.+.+.. . .. .+...|++++|+..|++.+...+-+...+..+..++...|++++|...++
T Consensus 83 ~~~~~~~---------~--~~---------~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~ 142 (217)
T 2pl2_A 83 YVALYRQ---------A--ED---------RERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLK 142 (217)
T ss_dssp HHHHHHT---------C--SS---------HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhhhh---------h--hh---------hcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 4433000 0 00 01112777888888887774444567777788888888888888888888
Q ss_pred HHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007329 524 HALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKMI 591 (608)
Q Consensus 524 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 591 (608)
++.+.. .++..+..+..+|...|++++|...++++ +.+...+..+...+...|++++|.+.+++..
T Consensus 143 ~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 143 QALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 888777 47777788888888888888888888877 4467778888888888888888888887654
No 40
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.57 E-value=5.9e-13 Score=133.52 Aligned_cols=182 Identities=12% Similarity=-0.035 Sum_probs=93.3
Q ss_pred HHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhhcCCh---hhHHHHHcccCCCCcchHHHHHHHHHhcC---
Q 007329 102 VRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFGDL---GHAWYVFGKMCDRDLFSWNVLIGGYAKAG--- 175 (608)
Q Consensus 102 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g--- 175 (608)
...+.+.|++++|.+++....+.|. ...+..|...|...|+. ++|...|++..+.+...+..|...+...|
T Consensus 10 a~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~ 86 (452)
T 3e4b_A 10 ANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGAT 86 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC----------------------------CHHHHHHHHHTC--CC
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCC
Confidence 3444556666677776666666542 23334455555556666 78888888776556667777777555554
Q ss_pred --ChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCCh---hhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC---
Q 007329 176 --FFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDL---KRGKEVHVHVIRFGYEADVDVVNALITMYVKCGD--- 247 (608)
Q Consensus 176 --~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~--- 247 (608)
++++|+++|++..+.+ .++ .+..+...|...+.. ..+.+.+......| +......+...|...+.
T Consensus 87 ~~~~~~A~~~~~~Aa~~g--~~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 87 EAEHHEAESLLKKAFANG--EGN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp HHHHHHHHHHHHHHHHTT--CSS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGG
T ss_pred CcCHHHHHHHHHHHHHCC--CHH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCccc
Confidence 6778888888888765 232 555565555544433 34555555555554 34555666667766663
Q ss_pred -HHHHHHHHccCCCCCHhHHHHHHHHHHhcC---ChhHHHHHHHHHHHCC
Q 007329 248 -LVRARLVFDGMPKRDRISWNAMISGYFENG---EYMKGLMLFIMMREVL 293 (608)
Q Consensus 248 -~~~A~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~ 293 (608)
.+.+..+++.....++..+..+...|.+.| +.++|++.|++..+.|
T Consensus 160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g 209 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG 209 (452)
T ss_dssp GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC
Confidence 444445555555555566666777776666 6666666666666654
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.55 E-value=8.9e-13 Score=122.99 Aligned_cols=224 Identities=11% Similarity=-0.009 Sum_probs=133.7
Q ss_pred chHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCC--HHHHHHHHHHHH
Q 007329 336 CNPLIKMYLSFGNREEGEKVFSRMES---KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPD--EITIASVLSACA 410 (608)
Q Consensus 336 ~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~ 410 (608)
+......+...|++++|...|++..+ .+...+..+..+|...|++++|+..+++..+.+..|+ ...|..+...+.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 33445555666666666666665533 2334566666677777777777777777766332222 334667777777
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCC---CcccHHHHHHHHHhCCCchHHHHH
Q 007329 411 CLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDK---NVISWTSIILGLRLNNRSFEALIF 487 (608)
Q Consensus 411 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~ 487 (608)
..|++++|...++.+.+.. +.+...+..+...|...|++++|.+.|++..+. +...|..+...+...+++++|++.
T Consensus 86 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888777777655 445567777777777788888888877776642 334455555233334477777777
Q ss_pred HHHhHhCCCCCHHHHHHHHHHHhccCc---HHHHHHHHHHHHHhC-CCCCc------cHHHHHHHHhHhcCCHHHHHHHH
Q 007329 488 FRKMMLNLKPNSVTLVSILSACARIGA---LMCGKEIHAHALRIG-VAFDG------FLPNALLDMYVRCGRMKPAWNQF 557 (608)
Q Consensus 488 ~~~m~~~~~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~-~~p~~------~~~~~l~~~~~~~g~~~~A~~~~ 557 (608)
|+++....+.+...+..+..++...|+ +++|...++++.+.. ..|+. ..|..+...|.+.|++++|.+.+
T Consensus 165 ~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 244 (272)
T 3u4t_A 165 FVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAW 244 (272)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 777764344445566666666666665 666666666665432 11221 24444555555555555555555
Q ss_pred Hhc
Q 007329 558 NSN 560 (608)
Q Consensus 558 ~~~ 560 (608)
+++
T Consensus 245 ~~a 247 (272)
T 3u4t_A 245 KNI 247 (272)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.54 E-value=1e-12 Score=121.00 Aligned_cols=201 Identities=9% Similarity=-0.063 Sum_probs=128.6
Q ss_pred hhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 007329 364 VVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDM 443 (608)
Q Consensus 364 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 443 (608)
...|..+...+...|++++|...|+++.+.. ..+...+..+...+...|++++|.+.++.+.+.. +.+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~------- 107 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARV------- 107 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH-------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHH-------
Confidence 3456666666667777777777776666543 2245556666666666666666666666665543 223334
Q ss_pred hHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHh--CCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 007329 444 YSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMML--NLKPNSVTLVSILSACARIGALMCGKEI 521 (608)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 521 (608)
|..+...+...|++++|+++++++.. ..+.+...+..+...+...|++++|.+.
T Consensus 108 ------------------------~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (252)
T 2ho1_A 108 ------------------------LNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEY 163 (252)
T ss_dssp ------------------------HHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ------------------------HHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44444455555555555555555552 2222445666666777777777777777
Q ss_pred HHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 007329 522 HAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNW 597 (608)
Q Consensus 522 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 597 (608)
++++.+..+. +...+..++..|...|++++|.+.++++ +.+...+..+...+...|++++|.++++++.+. .|
T Consensus 164 ~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p 240 (252)
T 2ho1_A 164 FEKSLRLNRN-QPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YP 240 (252)
T ss_dssp HHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT
T ss_pred HHHHHhcCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CC
Confidence 7777766543 4566677777788888888888888776 445667777777888888888888888888775 55
Q ss_pred Cch
Q 007329 598 RKL 600 (608)
Q Consensus 598 ~~~ 600 (608)
+..
T Consensus 241 ~~~ 243 (252)
T 2ho1_A 241 GSL 243 (252)
T ss_dssp TSH
T ss_pred CCH
Confidence 544
No 43
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.54 E-value=3.5e-13 Score=124.53 Aligned_cols=225 Identities=11% Similarity=-0.015 Sum_probs=108.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCC--CCcccchHHHHH
Q 007329 265 SWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFS--DDVSVCNPLIKM 342 (608)
Q Consensus 265 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~ 342 (608)
.|..+...+...|++++|+..|++..+.. .+...+..+...+...|++++|...++.+.+.... ++.
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~--------- 75 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADY--------- 75 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH---------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccch---------
Confidence 44455555555555555555555555443 34444444444444445555544444444332100 000
Q ss_pred HHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 007329 343 YLSFGNREEGEKVFSRMESKDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLH 422 (608)
Q Consensus 343 ~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 422 (608)
. .....|..+...|...|++++|...|++.... .|+. ..+...|+++.|...+
T Consensus 76 -------~-----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~ 128 (258)
T 3uq3_A 76 -------K-----------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKA 128 (258)
T ss_dssp -------H-----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHH
T ss_pred -------H-----------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHH
Confidence 0 00234555555566666666666666665553 2332 2233444555555555
Q ss_pred HHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHH
Q 007329 423 QLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTL 502 (608)
Q Consensus 423 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~ 502 (608)
+.+.+.. +.+... |..+...+...|++++|+..|++.....+.+..++
T Consensus 129 ~~~~~~~-~~~~~~-------------------------------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 176 (258)
T 3uq3_A 129 EAEAYVN-PEKAEE-------------------------------ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGY 176 (258)
T ss_dssp HHHHHCC-HHHHHH-------------------------------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHcC-cchHHH-------------------------------HHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHH
Confidence 5544432 222233 33444444444555555555555442233344555
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 503 VSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 503 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
..+...+...|++++|...++++.+..+. +...+..+..+|.+.|++++|.+.++++
T Consensus 177 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 177 SNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 55555555555555555555555554432 3444555555555555555555555554
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.53 E-value=8e-13 Score=123.29 Aligned_cols=231 Identities=9% Similarity=-0.077 Sum_probs=188.9
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCc--hhHHHHHHHH
Q 007329 366 SWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISY--IIIANTLIDM 443 (608)
Q Consensus 366 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~ 443 (608)
.+......+...|++++|+..|++..+... .+...+..+...+...|++++|...++.+.+....++ ...|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 445567788999999999999999998742 2445788888899999999999999999987432222 2347889999
Q ss_pred hHhcCCHHHHHHHHccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 007329 444 YSKCKCIDKALEVFHQIPD---KNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKE 520 (608)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 520 (608)
|...|++++|.+.|++..+ .+...|..+...+...|++++|++.|++.....+.+...+..+...+...+++++|.+
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998763 4567899999999999999999999999984455567777777734555569999999
Q ss_pred HHHHHHHhCCCCCccHHHHHHHHhHhcCC---HHHHHHHHHhc------CCC------HHHHHHHHHHHHhcCCHHHHHH
Q 007329 521 IHAHALRIGVAFDGFLPNALLDMYVRCGR---MKPAWNQFNSN------ERD------VSAWNILLTGYAERGQGALAEE 585 (608)
Q Consensus 521 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~------~~~------~~~~~~l~~~~~~~g~~~~A~~ 585 (608)
.++++.+..+. +...+..+..++...|+ +++|...++++ .|+ ..+|..+...|...|++++|.+
T Consensus 164 ~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 164 SFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999987655 46777778888988888 88888888776 244 2578889999999999999999
Q ss_pred HHHHHHHcCCCCCch
Q 007329 586 FFRKMIDSKGNWRKL 600 (608)
Q Consensus 586 ~~~~m~~~g~~p~~~ 600 (608)
.+++..+. .|++.
T Consensus 243 ~~~~al~~--~p~~~ 255 (272)
T 3u4t_A 243 AWKNILAL--DPTNK 255 (272)
T ss_dssp HHHHHHHH--CTTCH
T ss_pred HHHHHHhc--CccHH
Confidence 99999986 77766
No 45
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.53 E-value=5.4e-13 Score=119.51 Aligned_cols=196 Identities=14% Similarity=-0.022 Sum_probs=131.9
Q ss_pred CCCcccchHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007329 330 SDDVSVCNPLIKMYLSFGNREEGEKVFSRMES---KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVL 406 (608)
Q Consensus 330 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll 406 (608)
+++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..+++..+.. +-+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 56777888999999999999999999998765 466788889999999999999999999999864 22566777777
Q ss_pred HHHHcc-----------CChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHH
Q 007329 407 SACACL-----------GNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGL 475 (608)
Q Consensus 407 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~ 475 (608)
..+... |++++|...++...+.. +. +...|..+...+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~-------------------------------~~~~~~~lg~~~ 128 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PR-------------------------------YAPLHLQRGLVY 128 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TT-------------------------------CHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cc-------------------------------cHHHHHHHHHHH
Confidence 777776 55555555555554433 12 234455555666
Q ss_pred HhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHH
Q 007329 476 RLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWN 555 (608)
Q Consensus 476 ~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 555 (608)
...|++++|+..|++.++-. .+...+..+..++...|++++|...++++.+..+. +...+..+..++.+.|++++|.+
T Consensus 129 ~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~ 206 (217)
T 2pl2_A 129 ALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAAR 206 (217)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC---------
T ss_pred HHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHH
Confidence 66666667777777766222 66677777777777778888887777777776554 55666777777778888888877
Q ss_pred HHHhc
Q 007329 556 QFNSN 560 (608)
Q Consensus 556 ~~~~~ 560 (608)
.+++.
T Consensus 207 ~~~~~ 211 (217)
T 2pl2_A 207 AAALE 211 (217)
T ss_dssp -----
T ss_pred HHHHH
Confidence 77664
No 46
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.53 E-value=2.1e-12 Score=116.41 Aligned_cols=196 Identities=13% Similarity=-0.000 Sum_probs=130.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCC---CCCcccHHHHHHHHHh
Q 007329 401 TIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIP---DKNVISWTSIILGLRL 477 (608)
Q Consensus 401 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~ 477 (608)
.+..+...+...|+++.|.+.++.+.+.. +.+...+..+...|...|++++|.+.++++. ..+...+..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 88 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCG 88 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 34444444445555555555555444433 2234444555555555555555555555443 1234455666667777
Q ss_pred C-CCchHHHHHHHHhHh--CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHH
Q 007329 478 N-NRSFEALIFFRKMML--NLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAW 554 (608)
Q Consensus 478 ~-~~~~~A~~~~~~m~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 554 (608)
. |++++|+..++++.. ..+.+...+..+...+...|++++|...++++.+..+. +...+..++.+|.+.|++++|.
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~ 167 (225)
T 2vq2_A 89 RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQLGDAD 167 (225)
T ss_dssp TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCHHHHH
Confidence 7 777777777777773 22333567777788888888888888888888876544 5667778888888888888888
Q ss_pred HHHHhc----C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 555 NQFNSN----E-RDVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 555 ~~~~~~----~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
+.++++ + .+...+..+...+...|+.+.|..+++.+.+. .|++.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~ 216 (225)
T 2vq2_A 168 YYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSE 216 (225)
T ss_dssp HHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCH
Confidence 888887 4 57777877888888889999998888888765 56655
No 47
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.52 E-value=8e-14 Score=130.32 Aligned_cols=219 Identities=10% Similarity=-0.116 Sum_probs=102.9
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhH
Q 007329 366 SWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYS 445 (608)
Q Consensus 366 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 445 (608)
.|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+..+|.
T Consensus 45 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~ 122 (275)
T 1xnf_A 45 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALY 122 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHH
Confidence 34444555555555555555555555432 1234455555555555555555555555555443 223444555555555
Q ss_pred hcCCHHHHHHHHccCC--CCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 007329 446 KCKCIDKALEVFHQIP--DKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHA 523 (608)
Q Consensus 446 ~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 523 (608)
+.|++++|.+.|+++. .|+.......+..+...|++++|...+++.....+++...+. ++..+...++.++|.+.++
T Consensus 123 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~ 201 (275)
T 1xnf_A 123 YGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLK 201 (275)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHH
Confidence 5555555555555443 222222222333334445555555555555522333333322 4444445555555555555
Q ss_pred HHHHhCCCC---CccHHHHHHHHhHhcCCHHHHHHHHHhc-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007329 524 HALRIGVAF---DGFLPNALLDMYVRCGRMKPAWNQFNSN-ERDVSAWNILLTGYAERGQGALAEEFF 587 (608)
Q Consensus 524 ~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 587 (608)
.+.+..... +...+..++.+|.+.|++++|.+.++++ .-++..+.....++...|++++|++.+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 202 ADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHC----
T ss_pred HHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhHHHH
Confidence 544322110 1344555566666666666666666655 222222233344455555555555544
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.51 E-value=4.3e-13 Score=122.74 Aligned_cols=199 Identities=14% Similarity=0.043 Sum_probs=113.5
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhH
Q 007329 366 SWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYS 445 (608)
Q Consensus 366 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 445 (608)
.|..+...+...|++++|...|+++.+.. ..+...+..+...+...|++++|...++.+.+.. +.
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~------------- 89 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SS------------- 89 (243)
T ss_dssp -----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT-------------
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-Cc-------------
Confidence 44444555555555666665555555432 2234445555555555555555555555554432 22
Q ss_pred hcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 007329 446 KCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHA 525 (608)
Q Consensus 446 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 525 (608)
+...+..+...+...|++++|++.++++....+.+...+..+...+...|++++|.+.++++
T Consensus 90 ------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 151 (243)
T 2q7f_A 90 ------------------AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRA 151 (243)
T ss_dssp ------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred ------------------chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 33445555555666666666666666666333445666666777777777777777777777
Q ss_pred HHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 526 LRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 526 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
.+..+. +...+..++..|.+.|++++|.+.++++ +.+..+|..+...|...|++++|.+.++++.+. .|+..
T Consensus 152 ~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~p~~~ 227 (243)
T 2q7f_A 152 VELNEN-DTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI--QPDHM 227 (243)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH--CTTCH
T ss_pred HHhCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc--CcchH
Confidence 665443 4556667777777777777777777776 445667777777777788888888888877764 55554
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.50 E-value=1e-11 Score=115.87 Aligned_cols=225 Identities=13% Similarity=-0.049 Sum_probs=169.7
Q ss_pred ChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHhCCCCchhHHH
Q 007329 363 DVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACAC----LGNLDLGIKLHQLAMRTGLISYIIIAN 438 (608)
Q Consensus 363 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 438 (608)
+...+..+...|...|++++|+..|++..+.+ +...+..+...+.. .+++++|...++...+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 34455566666777777777777777777632 45566666677777 777777777777777665 556666
Q ss_pred HHHHHhHh----cCCHHHHHHHHccCCC-CCcccHHHHHHHHHh----CCCchHHHHHHHHhHhCCCCCHHHHHHHHHHH
Q 007329 439 TLIDMYSK----CKCIDKALEVFHQIPD-KNVISWTSIILGLRL----NNRSFEALIFFRKMMLNLKPNSVTLVSILSAC 509 (608)
Q Consensus 439 ~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~ 509 (608)
.+...|.. .+++++|.+.|++..+ .+...+..+...|.. .+++++|++.|++..... +...+..+...+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~ 156 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLY 156 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHH
Confidence 67777777 7788888877776653 355667777777887 888888888888887322 566677777777
Q ss_pred hc----cCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHh----cCCHHHHHHHHHhc--CCCHHHHHHHHHHHHh---
Q 007329 510 AR----IGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVR----CGRMKPAWNQFNSN--ERDVSAWNILLTGYAE--- 576 (608)
Q Consensus 510 ~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~--~~~~~~~~~l~~~~~~--- 576 (608)
.. .+++++|...++++.+.+ +...+..+..+|.. .+++++|.+.+++. ..+...+..+...|..
T Consensus 157 ~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~ 233 (273)
T 1ouv_A 157 DAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEG 233 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS
T ss_pred HcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCC
Confidence 77 889999999999988765 45677788888988 99999999999988 4557788888899988
Q ss_pred -cCCHHHHHHHHHHHHHcCCCCCch
Q 007329 577 -RGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 577 -~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
.+++++|.+++++..+. .|+..
T Consensus 234 ~~~~~~~A~~~~~~a~~~--~~~~a 256 (273)
T 1ouv_A 234 VTRNEKQAIENFKKGCKL--GAKGA 256 (273)
T ss_dssp SSCCSTTHHHHHHHHHHH--TCHHH
T ss_pred cccCHHHHHHHHHHHHHc--CCHHH
Confidence 89999999999999887 34443
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.50 E-value=3.6e-12 Score=117.28 Aligned_cols=196 Identities=12% Similarity=-0.010 Sum_probs=141.4
Q ss_pred cccchHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007329 333 VSVCNPLIKMYLSFGNREEGEKVFSRMES---KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSAC 409 (608)
Q Consensus 333 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 409 (608)
...+..+...+...|++++|...|+++.+ .+...+..+...|...|++++|.+.++++.+.. ..+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 56778889999999999999999998764 467788899999999999999999999998864 23677888888999
Q ss_pred HccCChHHHHHHHHHHHHhCCCC-chhHHHHHHHHhHhcCCHHHHHHHHccCCC---CCcccHHHHHHHHHhCCCchHHH
Q 007329 410 ACLGNLDLGIKLHQLAMRTGLIS-YIIIANTLIDMYSKCKCIDKALEVFHQIPD---KNVISWTSIILGLRLNNRSFEAL 485 (608)
Q Consensus 410 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~ 485 (608)
...|++++|.++++.+.+.+..| +...+..+...|.+.|++++|.+.|+++.+ .+...+..+...+...|++++|.
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999887622223 455666666677777777777777766542 23445555666666666666666
Q ss_pred HHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhC
Q 007329 486 IFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIG 529 (608)
Q Consensus 486 ~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 529 (608)
..++++....+.+...+..+...+...|++++|.++++++.+..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 196 QYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 66666653334445555555555566666666666666655543
No 51
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.50 E-value=1.9e-12 Score=125.69 Aligned_cols=232 Identities=9% Similarity=-0.035 Sum_probs=192.8
Q ss_pred hhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-hHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 007329 364 VVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGN-LDLGIKLHQLAMRTGLISYIIIANTLID 442 (608)
Q Consensus 364 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~ 442 (608)
...|+.+...+.+.|++++|+..+++..... .-+...|..+...+...|+ +++|+..++.+++.. +-+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 4567778888899999999999999998864 2256778888888999996 999999999999877 557788888999
Q ss_pred HhHhcCCHHHHHHHHccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhc-cCcHHHH
Q 007329 443 MYSKCKCIDKALEVFHQIPD---KNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACAR-IGALMCG 518 (608)
Q Consensus 443 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~-~~~~~~a 518 (608)
++.+.|++++|+..|+++.+ .+...|..+..++.+.|++++|+..|++++...+-+...|+.+..++.. .|..++|
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHH
Confidence 99999999999999998773 4667899999999999999999999999995556678899999999988 5665777
Q ss_pred -----HHHHHHHHHhCCCCCccHHHHHHHHhHhcC--CHHHHHHHHHhc---CCCHHHHHHHHHHHHhcC---------C
Q 007329 519 -----KEIHAHALRIGVAFDGFLPNALLDMYVRCG--RMKPAWNQFNSN---ERDVSAWNILLTGYAERG---------Q 579 (608)
Q Consensus 519 -----~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~~---~~~~~~~~~l~~~~~~~g---------~ 579 (608)
++.++++++..+. +...|..+..+|...| ++++|.+.+.++ +.+...+..++..|...| .
T Consensus 255 ~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~ 333 (382)
T 2h6f_A 255 VLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDI 333 (382)
T ss_dssp HHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHHH
Confidence 5889999887766 6778888999999888 689999988887 446788999999998874 2
Q ss_pred HHHHHHHHHHH-HHcCCCCCch
Q 007329 580 GALAEEFFRKM-IDSKGNWRKL 600 (608)
Q Consensus 580 ~~~A~~~~~~m-~~~g~~p~~~ 600 (608)
.++|.++++++ .+ +.|...
T Consensus 334 ~~~A~~~~~~l~~~--~DP~r~ 353 (382)
T 2h6f_A 334 LNKALELCEILAKE--KDTIRK 353 (382)
T ss_dssp HHHHHHHHHHHHHT--TCGGGH
T ss_pred HHHHHHHHHHHHHH--hCchhH
Confidence 58999999998 55 466554
No 52
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.49 E-value=8e-13 Score=120.92 Aligned_cols=198 Identities=12% Similarity=0.033 Sum_probs=121.6
Q ss_pred CCCcccchHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007329 330 SDDVSVCNPLIKMYLSFGNREEGEKVFSRMES---KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVL 406 (608)
Q Consensus 330 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll 406 (608)
......+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|+..++++.+.. ..+...+..+.
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ----------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 34566788889999999999999999998865 467788889999999999999999999998864 33678888889
Q ss_pred HHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCC---CCCcccHHHHHHHHHhCCCchH
Q 007329 407 SACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIP---DKNVISWTSIILGLRLNNRSFE 483 (608)
Q Consensus 407 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 483 (608)
..+...|++++|.+.++.+.+.. +.+...+..+...+.+.|++++|...++++. ..+...+..+...+.+.|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999988765 4455566666666777777777766666544 1234445555555555555555
Q ss_pred HHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhC
Q 007329 484 ALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIG 529 (608)
Q Consensus 484 A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 529 (608)
|++.++++....+.+..++..+..++...|++++|.+.++++.+..
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 5555555553333344455555555555555555555555555443
No 53
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.48 E-value=4.4e-12 Score=114.30 Aligned_cols=195 Identities=8% Similarity=-0.103 Sum_probs=150.1
Q ss_pred hhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 007329 364 VVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDM 443 (608)
Q Consensus 364 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 443 (608)
...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++.+.+.. +.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 4456667777777888888888888777653 2346677777777888888888888888777765 4456677778888
Q ss_pred hHhc-CCHHHHHHHHccCCC--CC---cccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHH
Q 007329 444 YSKC-KCIDKALEVFHQIPD--KN---VISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMC 517 (608)
Q Consensus 444 ~~~~-g~~~~A~~~~~~~~~--~~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~ 517 (608)
+... |++++|.+.++++.+ .+ ...|..+...+...|++++|+..++++....+.+...+..+...+...|++++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 8888 888888888877654 22 35677788888888999999999988884445567888888889999999999
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 518 GKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 518 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
|..+++++.+..+..+...+..+...+...|+.++|..+++.+
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 9999998887765236667777788888899999998888886
No 54
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.48 E-value=1.6e-12 Score=121.47 Aligned_cols=213 Identities=10% Similarity=-0.091 Sum_probs=126.3
Q ss_pred hcCChhHHHHHHHHHHHCCCCC---ChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHH
Q 007329 275 ENGEYMKGLMLFIMMREVLVDP---DFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREE 351 (608)
Q Consensus 275 ~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 351 (608)
..|++++|+..++++.+..... +...+..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 3466777777777776653211 24456666666777777777777777776664 3455666667777777777777
Q ss_pred HHHHHhhCCC---CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHh
Q 007329 352 GEKVFSRMES---KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRT 428 (608)
Q Consensus 352 a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 428 (608)
|.+.|++..+ .+...|..+...|...|++++|...++++.+. .|+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 7777766654 34566777777777777777777777777764 344444444444555667777777777666654
Q ss_pred CCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCC-------cccHHHHHHHHHhCCCchHHHHHHHHhH
Q 007329 429 GLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKN-------VISWTSIILGLRLNNRSFEALIFFRKMM 492 (608)
Q Consensus 429 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 492 (608)
. +++...+. ++..+...++.++|.+.+++..+.+ ...|..+...+.+.|++++|...|++..
T Consensus 174 ~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 242 (275)
T 1xnf_A 174 S-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 242 (275)
T ss_dssp S-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred C-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4 33333332 4445555556666666666554321 1333444444444444444444444444
No 55
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.45 E-value=4.1e-10 Score=116.75 Aligned_cols=412 Identities=10% Similarity=-0.006 Sum_probs=270.4
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCC---hhhHHHHHHHHHHhC-CCCchhH
Q 007329 159 RDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPD---LKRGKEVHVHVIRFG-YEADVDV 234 (608)
Q Consensus 159 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~g-~~~~~~~ 234 (608)
.|..+|..++..+.+.+.++.+..+|+++.... +.....|..-+..-.+.++ ++.+.++|+..+... ..|++..
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f--P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF--PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 478899999999999999999999999999763 6666777777888788888 999999999988764 2478888
Q ss_pred HHHHHHHHHhcCCH--------HHHHHHHccCC------C-CCHhHHHHHHHHHHh---------cCChhHHHHHHHHHH
Q 007329 235 VNALITMYVKCGDL--------VRARLVFDGMP------K-RDRISWNAMISGYFE---------NGEYMKGLMLFIMMR 290 (608)
Q Consensus 235 ~~~li~~~~~~g~~--------~~A~~~~~~~~------~-~~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~ 290 (608)
|...+....+.++. +...++|+... . .+...|...+..... .++.+.+..+|++.+
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 88887766665543 23345665421 1 245677777765432 334667778888777
Q ss_pred HCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhh-------CCC--
Q 007329 291 EVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSR-------MES-- 361 (608)
Q Consensus 291 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-------~~~-- 361 (608)
......-..+|......-...+ ...+.+++.+.. .+++.|...+.+ +..
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~-~~~a~~~~~e~~---------------------~~y~~Ar~~~~e~~~~~~~l~r~~ 279 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVN-QLTARRHIGELS---------------------AQYMNARSLYQDWLNITKGLKRNL 279 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHC-TTTHHHHHHHHH---------------------HHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred hCccHHHHHHHHHHHHHHHhcC-cchHHHHHHHhh---------------------HHHHHHHHHHHHHHHHHHhHhhcc
Confidence 5321111223322211111111 111222221110 111222222211 100
Q ss_pred ------------C--C------hhhHHHHHHHHHcCCC-------chHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 007329 362 ------------K--D------VVSWTTMISCYEGSVL-------PDKAVETYQMMEAEGSMPDEITIASVLSACACLGN 414 (608)
Q Consensus 362 ------------~--~------~~~~~~li~~~~~~~~-------~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 414 (608)
| + ...|...+.---..+. .+.+..+|++....- .-....|...+.-+...|+
T Consensus 280 p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~ 358 (679)
T 4e6h_A 280 PITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNT 358 (679)
T ss_dssp CSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSC
T ss_pred ccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCc
Confidence 0 0 1234444433222221 123456677776652 3366777777777788888
Q ss_pred hHHHH-HHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC-------------CC------------cccH
Q 007329 415 LDLGI-KLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPD-------------KN------------VISW 468 (608)
Q Consensus 415 ~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------------~~------------~~~~ 468 (608)
.+.|. .+++...... +.+...+-.++....+.|++++|.++|+++.+ |+ ...|
T Consensus 359 ~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vW 437 (679)
T 4e6h_A 359 DSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVY 437 (679)
T ss_dssp CTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHH
Confidence 88896 9999888654 55667777888888899999999999988763 21 2357
Q ss_pred HHHHHHHHhCCCchHHHHHHHHhHhC-CCCCHHHHHHHHHHHhcc-CcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHh
Q 007329 469 TSIILGLRLNNRSFEALIFFRKMMLN-LKPNSVTLVSILSACARI-GALMCGKEIHAHALRIGVAFDGFLPNALLDMYVR 546 (608)
Q Consensus 469 ~~l~~~~~~~~~~~~A~~~~~~m~~~-~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 546 (608)
...+....+.|+.+.|..+|.+.+.. .......|...+..-.+. ++.+.|..+|+..++.-+ -++..+...++....
T Consensus 438 i~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p-~~~~~w~~y~~fe~~ 516 (679)
T 4e6h_A 438 CVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA-TDGEYINKYLDFLIY 516 (679)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHh
Confidence 77888888889999999999999843 222334444333333333 569999999999987633 356677788898889
Q ss_pred cCCHHHHHHHHHhc---CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc
Q 007329 547 CGRMKPAWNQFNSN---ER----DVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRK 599 (608)
Q Consensus 547 ~g~~~~A~~~~~~~---~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 599 (608)
.|+.+.|..+|+++ .| ....|...+..-...|+.+.+..+.+++.+. .|++
T Consensus 517 ~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~ 574 (679)
T 4e6h_A 517 VNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEV 574 (679)
T ss_dssp HTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTC
T ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC
Confidence 99999999999998 33 3468999999889999999999999999987 5553
No 56
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.44 E-value=1.2e-12 Score=129.94 Aligned_cols=287 Identities=14% Similarity=0.046 Sum_probs=163.6
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----hhHHHHHHHHHhhcCChhhHHHHHHHHHHhC----CCC-C
Q 007329 262 DRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPD----FMTLSSVISASELVGDEKLGREVHGYVIKMG----FSD-D 332 (608)
Q Consensus 262 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~-~ 332 (608)
....+......+...|++++|...|++..+.+.. + ...+..+...+...|++++|...++.+.+.. ..+ .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3445556666777777777777777777665211 2 2345555666666677777777666654321 000 1
Q ss_pred cccchHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCC-CCC----HHHHHHHHH
Q 007329 333 VSVCNPLIKMYLSFGNREEGEKVFSRMESKDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGS-MPD----EITIASVLS 407 (608)
Q Consensus 333 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~t~~~ll~ 407 (608)
..++..+...|...|++++|...+ ++..+... .++ ..++..+..
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~-------------------------------~~al~~~~~~~~~~~~~~~~~~l~~ 135 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCC-------------------------------QRHLDISRELNDKVGEARALYNLGN 135 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHH-------------------------------HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHH-------------------------------HHHHHHHHhcccccchHHHHHHHHH
Confidence 223344444444555555555444 44332100 001 224444445
Q ss_pred HHHccCC--------------------hHHHHHHHHHHHHh----CC-CCchhHHHHHHHHhHhcCCHHHHHHHHccCCC
Q 007329 408 ACACLGN--------------------LDLGIKLHQLAMRT----GL-ISYIIIANTLIDMYSKCKCIDKALEVFHQIPD 462 (608)
Q Consensus 408 ~~~~~~~--------------------~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 462 (608)
.+...|+ ++.|...++...+. +. .....++..+...|...|++++|...+++..+
T Consensus 136 ~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 215 (406)
T 3sf4_A 136 VYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 215 (406)
T ss_dssp HHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHH
T ss_pred HHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5555555 55555555544321 10 11123455556666666666666666665441
Q ss_pred -----CC----cccHHHHHHHHHhCCCchHHHHHHHHhHh--CCCCC----HHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 007329 463 -----KN----VISWTSIILGLRLNNRSFEALIFFRKMML--NLKPN----SVTLVSILSACARIGALMCGKEIHAHALR 527 (608)
Q Consensus 463 -----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~--~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 527 (608)
++ ...|..+...+...|++++|...+++... ...++ ..++..+...+...|++++|...++++.+
T Consensus 216 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 216 IAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 11 12566677777777888888877777761 11111 44667777888888888888888887765
Q ss_pred hCCCC-C----ccHHHHHHHHhHhcCCHHHHHHHHHhc------CCC----HHHHHHHHHHHHhcCCH
Q 007329 528 IGVAF-D----GFLPNALLDMYVRCGRMKPAWNQFNSN------ERD----VSAWNILLTGYAERGQG 580 (608)
Q Consensus 528 ~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~------~~~----~~~~~~l~~~~~~~g~~ 580 (608)
..... + ..++..+..+|.+.|++++|.+.++++ ..+ ..++..+...+...|+.
T Consensus 296 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 296 IAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 42221 1 446667888888888888888888776 111 44666777777777765
No 57
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.43 E-value=1.2e-11 Score=120.00 Aligned_cols=148 Identities=7% Similarity=-0.039 Sum_probs=69.0
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-ChhHHHHHHHHHhhcCC-hhhHHHHHHHHHHhCCCCCcccchHHH
Q 007329 263 RISWNAMISGYFENGEYMKGLMLFIMMREVLVDP-DFMTLSSVISASELVGD-EKLGREVHGYVIKMGFSDDVSVCNPLI 340 (608)
Q Consensus 263 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~ 340 (608)
...|+.+...+.+.|++++|++.+++.... .| +...|..+...+...|+ +++|...++.+++.. +.+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~------- 166 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNY------- 166 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCH-------
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCH-------
Confidence 445666666666666666666666666553 22 23334444444444443 455554444444432 2233
Q ss_pred HHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHH
Q 007329 341 KMYLSFGNREEGEKVFSRMESKDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIK 420 (608)
Q Consensus 341 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 420 (608)
..|+.+..++...|++++|+..|+++.+... -+...|..+..++...|++++|+.
T Consensus 167 ------------------------~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~ 221 (382)
T 2h6f_A 167 ------------------------QVWHHRRVLVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQ 221 (382)
T ss_dssp ------------------------HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHH
T ss_pred ------------------------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHH
Confidence 3344444444444444444444444444321 133444444444444455555555
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHhHh
Q 007329 421 LHQLAMRTGLISYIIIANTLIDMYSK 446 (608)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~li~~~~~ 446 (608)
.++.+++.. +.+...|+.+..++.+
T Consensus 222 ~~~~al~l~-P~~~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 222 YVDQLLKED-VRNNSVWNQRYFVISN 246 (382)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 554444443 2233344444444433
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.41 E-value=8.9e-13 Score=131.24 Aligned_cols=265 Identities=12% Similarity=0.065 Sum_probs=155.5
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCc----ccchHHHHHHHhcCChHHHHHHHhhCCC---------CChhh
Q 007329 300 TLSSVISASELVGDEKLGREVHGYVIKMGFSDDV----SVCNPLIKMYLSFGNREEGEKVFSRMES---------KDVVS 366 (608)
Q Consensus 300 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------~~~~~ 366 (608)
.+..+...+...|++++|...++.+.+.+ +.+. .++..+...|...|++++|...+++..+ .....
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 34445566777888888888888887763 2222 3566677777777777777777665532 12234
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCC-----------------hHHHHHHHHH
Q 007329 367 WTTMISCYEGSVLPDKAVETYQMMEAE----GSMP-DEITIASVLSACACLGN-----------------LDLGIKLHQL 424 (608)
Q Consensus 367 ~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~-----------------~~~a~~~~~~ 424 (608)
+..+...|...|++++|...+++..+. +-.| ...++..+...+...|+ ++.|.+.+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 555555666666666666666665432 1001 12244444455555555 4444444443
Q ss_pred HHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCC--CcccHHHHHHHHHhCCCchHHHHHHHHhHh--CCCCC--
Q 007329 425 AMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDK--NVISWTSIILGLRLNNRSFEALIFFRKMML--NLKPN-- 498 (608)
Q Consensus 425 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~--~~~p~-- 498 (608)
..+. ......+ ....+..+...+...|++++|++.+++... ...++
T Consensus 209 al~~----------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 260 (411)
T 4a1s_A 209 NLKL----------------------------MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA 260 (411)
T ss_dssp HHHH----------------------------HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHH----------------------------HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH
Confidence 3221 0000000 112455556666666666666666666651 10111
Q ss_pred --HHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCC-----CccHHHHHHHHhHhcCCHHHHHHHHHhc------CCC--
Q 007329 499 --SVTLVSILSACARIGALMCGKEIHAHALRIGVAF-----DGFLPNALLDMYVRCGRMKPAWNQFNSN------ERD-- 563 (608)
Q Consensus 499 --~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~------~~~-- 563 (608)
..++..+...+...|++++|...++++.+..... ...++..+..+|...|++++|.+.++++ ..+
T Consensus 261 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 340 (411)
T 4a1s_A 261 AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRI 340 (411)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChH
Confidence 2256667777777778887777777766432211 1345666777788888888888888776 112
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 564 --VSAWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 564 --~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
..++..+...|...|++++|.+.+++..+.
T Consensus 341 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 341 GEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 346777778888888888888888877654
No 59
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.41 E-value=9.5e-12 Score=108.25 Aligned_cols=165 Identities=14% Similarity=0.092 Sum_probs=124.4
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHH
Q 007329 433 YIIIANTLIDMYSKCKCIDKALEVFHQIPD---KNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSAC 509 (608)
Q Consensus 433 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~ 509 (608)
+..+|..+...|.+.|++++|++.|++..+ .++..|..+..+|.+.|++++|+..++......+.+...+..+...+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN 83 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 344556666666666666666666665542 24456666777777777777777777777744555667777777888
Q ss_pred hccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHH
Q 007329 510 ARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEE 585 (608)
Q Consensus 510 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~ 585 (608)
...++++.+.+.+.++.+..+. +...+..++.+|.+.|++++|.+.|+++ +.+..+|..+...|...|++++|.+
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 162 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVK 162 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHH
Confidence 8888888888888888877655 6677888888899999999999999887 4567888999999999999999999
Q ss_pred HHHHHHHcCCCCCch
Q 007329 586 FFRKMIDSKGNWRKL 600 (608)
Q Consensus 586 ~~~~m~~~g~~p~~~ 600 (608)
.|++.++. .|+..
T Consensus 163 ~~~~al~~--~p~~a 175 (184)
T 3vtx_A 163 YFKKALEK--EEKKA 175 (184)
T ss_dssp HHHHHHHT--THHHH
T ss_pred HHHHHHhC--CccCH
Confidence 99998874 66654
No 60
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.40 E-value=7e-11 Score=110.11 Aligned_cols=222 Identities=11% Similarity=0.023 Sum_probs=122.2
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcC----CCChhhHHHHHHHHHHhCCCCchhHH
Q 007329 160 DLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGG----VPDLKRGKEVHVHVIRFGYEADVDVV 235 (608)
Q Consensus 160 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~ 235 (608)
+..++..+...+...|++++|++.|++..+.+ +...+..+...+.. .+++++|.+.|++..+.+ +...+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 44556666666777777777777777766522 33445555555555 666666666666666554 44455
Q ss_pred HHHHHHHHh----cCCHHHHHHHHccCCCC-CHhHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCChhHHHHHHH
Q 007329 236 NALITMYVK----CGDLVRARLVFDGMPKR-DRISWNAMISGYFE----NGEYMKGLMLFIMMREVLVDPDFMTLSSVIS 306 (608)
Q Consensus 236 ~~li~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 306 (608)
..+...|.. .+++++|.+.|++..+. +...+..+...|.. .+++++|+..|++..+
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~--------------- 142 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD--------------- 142 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh---------------
Confidence 555555555 55555555555443322 33444444444444 4444444444444444
Q ss_pred HHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHh----cCChHHHHHHHhhCCC-CChhhHHHHHHHHHc----C
Q 007329 307 ASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLS----FGNREEGEKVFSRMES-KDVVSWTTMISCYEG----S 377 (608)
Q Consensus 307 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~ 377 (608)
.+ +...+..+...|.. .+++++|...|++..+ .+...+..+...|.. .
T Consensus 143 --------------------~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 143 --------------------LN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp --------------------TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred --------------------cC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCC
Confidence 32 22333334444444 4455555555544432 233445555556666 6
Q ss_pred CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHhC
Q 007329 378 VLPDKAVETYQMMEAEGSMPDEITIASVLSACAC----LGNLDLGIKLHQLAMRTG 429 (608)
Q Consensus 378 ~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~ 429 (608)
+++++|+..|++..+.+ +...+..+...|.. .+++++|.+.++...+.+
T Consensus 200 ~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 200 KNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 66777777777666654 24555566666666 677777777777666655
No 61
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.38 E-value=9.1e-12 Score=125.71 Aligned_cols=207 Identities=11% Similarity=-0.061 Sum_probs=137.1
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh-HHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHcc
Q 007329 381 DKAVETYQMMEAEGSMPDEITIASVLSACACLGNL-DLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQ 459 (608)
Q Consensus 381 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 459 (608)
++++..+++..... ..+...+..+...+...|++ ++|++.++.+.+.. +.+...+..+..+|.+.|++++|.+.|++
T Consensus 85 ~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 85 EKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44444444443322 22455555566666666666 66666666666554 33455666666666666666666666665
Q ss_pred CC--CCCcccHHHHHHHHHhC---------CCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhcc--------CcHHHHHH
Q 007329 460 IP--DKNVISWTSIILGLRLN---------NRSFEALIFFRKMMLNLKPNSVTLVSILSACARI--------GALMCGKE 520 (608)
Q Consensus 460 ~~--~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~--------~~~~~a~~ 520 (608)
.. .|+...|..+...+... |++++|++.|++.....+.+...|..+..++... |++++|.+
T Consensus 163 al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~ 242 (474)
T 4abn_A 163 ALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALS 242 (474)
T ss_dssp HHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHH
Confidence 54 24445555666666666 7777788888777744455677777777777777 78888888
Q ss_pred HHHHHHHhCCC--CCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007329 521 IHAHALRIGVA--FDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRK 589 (608)
Q Consensus 521 ~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 589 (608)
.++++.+..+. -+...|..+..+|...|++++|.+.|+++ +.+...|..+...+...|++++|.+.+++
T Consensus 243 ~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 243 AYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88888876541 26677777888888888888888888877 44566778888888888888888765443
No 62
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.38 E-value=2.2e-09 Score=111.23 Aligned_cols=128 Identities=9% Similarity=-0.026 Sum_probs=56.5
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhc-CCHHHHHHHHccCCC---CCcccHHHHHHHHHh
Q 007329 402 IASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKC-KCIDKALEVFHQIPD---KNVISWTSIILGLRL 477 (608)
Q Consensus 402 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~ 477 (608)
|...+....+.|+.+.|..+|..+.+.-......+|...+..-.+. ++.+.|.++|+...+ .+...|...+.....
T Consensus 437 Wi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~ 516 (679)
T 4e6h_A 437 YCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIY 516 (679)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHh
Confidence 4444444444555555555555554430011122222222222222 235555555554432 233344444444445
Q ss_pred CCCchHHHHHHHHhHhCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhC
Q 007329 478 NNRSFEALIFFRKMMLNLKP---NSVTLVSILSACARIGALMCGKEIHAHALRIG 529 (608)
Q Consensus 478 ~~~~~~A~~~~~~m~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 529 (608)
.|+.+.|..+|++.+...++ ....|...+..-.+.|+.+.+..+.+++.+.-
T Consensus 517 ~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 517 VNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 55555555555555522221 22344444444445555555666665555543
No 63
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.38 E-value=1.6e-11 Score=120.72 Aligned_cols=224 Identities=12% Similarity=0.044 Sum_probs=164.3
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC------CchhHHH
Q 007329 370 MISCYEGSVLPDKAVETYQMMEAEG-SMPD----EITIASVLSACACLGNLDLGIKLHQLAMRTGLI------SYIIIAN 438 (608)
Q Consensus 370 li~~~~~~~~~~~a~~~~~~m~~~g-~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~ 438 (608)
....+...|++++|+..+++..+.- -.++ ..++..+...+...|+++.|...+....+.... ....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 3445667788888888887776531 0122 345667777777888888888888776653111 1134667
Q ss_pred HHHHHhHhcCCHHHHHHHHccCCC-----CCc----ccHHHHHHHHHhCCCchHHHHHHHHhHh-----CC-CCCHHHHH
Q 007329 439 TLIDMYSKCKCIDKALEVFHQIPD-----KNV----ISWTSIILGLRLNNRSFEALIFFRKMML-----NL-KPNSVTLV 503 (608)
Q Consensus 439 ~li~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~l~~~~~~~~~~~~A~~~~~~m~~-----~~-~p~~~~~~ 503 (608)
.+...|...|++++|.+.|++..+ ++. .++..+...|...|++++|++.+++... +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 777888888888888888876652 111 3677888899999999999999999883 44 33466788
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHhCC----CCCccHHHHHHHHhHhcCC---HHHHHHHHHhcC---CCHHHHHHHHHH
Q 007329 504 SILSACARIGALMCGKEIHAHALRIGV----AFDGFLPNALLDMYVRCGR---MKPAWNQFNSNE---RDVSAWNILLTG 573 (608)
Q Consensus 504 ~ll~~~~~~~~~~~a~~~~~~~~~~~~----~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~---~~~~~~~~l~~~ 573 (608)
.+...+...|++++|...++++.+... ......+..+...|...|+ +++|..++++.. .....+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 899999999999999999998875421 1112335678888999999 899999999882 234577889999
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 007329 574 YAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 574 ~~~~g~~~~A~~~~~~m~~~ 593 (608)
|...|++++|.+.+++..+.
T Consensus 349 y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999998764
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.38 E-value=5.3e-12 Score=121.56 Aligned_cols=264 Identities=13% Similarity=0.081 Sum_probs=162.8
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHhCCCCC----cccchHHHHHHHhcCChHHHHHHHhhCCC-----C----ChhhH
Q 007329 301 LSSVISASELVGDEKLGREVHGYVIKMGFSDD----VSVCNPLIKMYLSFGNREEGEKVFSRMES-----K----DVVSW 367 (608)
Q Consensus 301 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~----~~~~~ 367 (608)
+......+...|++++|...++.+.+.. +.+ ...+..+...+...|++++|...+++..+ . ....+
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 3444556677888888888888887763 222 24566667777777777777777665432 1 12345
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCC--------------------hHHHHHHH
Q 007329 368 TTMISCYEGSVLPDKAVETYQMMEAEGS-MPD----EITIASVLSACACLGN--------------------LDLGIKLH 422 (608)
Q Consensus 368 ~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~--------------------~~~a~~~~ 422 (608)
..+...|...|++++|...+++..+... .++ ..++..+...+...|+ ++.|...+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 5555566666666666666655443210 011 1234444444445555 44444444
Q ss_pred HHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCC--CcccHHHHHHHHHhCCCchHHHHHHHHhH--hCCCCC
Q 007329 423 QLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDK--NVISWTSIILGLRLNNRSFEALIFFRKMM--LNLKPN 498 (608)
Q Consensus 423 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~m~--~~~~p~ 498 (608)
+...+. ......+ ....+..+...+...|++++|.+.+++.. ....++
T Consensus 167 ~~a~~~----------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 218 (338)
T 3ro2_A 167 EENLSL----------------------------VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD 218 (338)
T ss_dssp HHHHHH----------------------------HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHH----------------------------HHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC
Confidence 332211 0000000 12345566667777777777777777766 111111
Q ss_pred ----HHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCC-C----ccHHHHHHHHhHhcCCHHHHHHHHHhc------CCC
Q 007329 499 ----SVTLVSILSACARIGALMCGKEIHAHALRIGVAF-D----GFLPNALLDMYVRCGRMKPAWNQFNSN------ERD 563 (608)
Q Consensus 499 ----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~------~~~ 563 (608)
..++..+...+...|++++|...++++.+..... + ..++..+...|...|++++|.+.++++ ..+
T Consensus 219 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 298 (338)
T 3ro2_A 219 KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD 298 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Confidence 2367777888888899999988888876542221 1 456677888899999999999999877 122
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 564 ----VSAWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 564 ----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
..++..+...|...|++++|.+.+++..+.
T Consensus 299 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 299 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 447788999999999999999999999874
No 65
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.37 E-value=3e-12 Score=127.35 Aligned_cols=270 Identities=13% Similarity=0.080 Sum_probs=178.2
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh----hHHHHHHHHHhhcCChhhHHHHHHHHHHhC-----CCCCc
Q 007329 263 RISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDF----MTLSSVISASELVGDEKLGREVHGYVIKMG-----FSDDV 333 (608)
Q Consensus 263 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~ 333 (608)
...+..+...+...|++++|+..|++..+.+.. +. ..+..+...+...|++++|...+++..+.. .+...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 345566778899999999999999999886322 22 467788888999999999999999987641 12234
Q ss_pred ccchHHHHHHHhcCChHHHHHHHhhCCC-----C----ChhhHHHHHHHHHcCCC-----------------chHHHHHH
Q 007329 334 SVCNPLIKMYLSFGNREEGEKVFSRMES-----K----DVVSWTTMISCYEGSVL-----------------PDKAVETY 387 (608)
Q Consensus 334 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~----~~~~~~~li~~~~~~~~-----------------~~~a~~~~ 387 (608)
.++..+...|...|++++|...+++..+ . ....+..+...|...|+ +++|+..+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 6778889999999999999999988754 1 23467788889999999 88888888
Q ss_pred HHHHHC----CCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC-CchhHHHHHHHHhHhcCCHHHHHHHHccCC
Q 007329 388 QMMEAE----GSMP-DEITIASVLSACACLGNLDLGIKLHQLAMRTGLI-SYIIIANTLIDMYSKCKCIDKALEVFHQIP 461 (608)
Q Consensus 388 ~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 461 (608)
++..+. +..+ ....+..+...+...|++++|...+++..+.... .+.. .
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------------~--------- 261 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA----------------A--------- 261 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH----------------H---------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH----------------H---------
Confidence 776542 1111 1235555666666777777777776665542100 0000 0
Q ss_pred CCCcccHHHHHHHHHhCCCchHHHHHHHHhH---hCCC---CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCC---
Q 007329 462 DKNVISWTSIILGLRLNNRSFEALIFFRKMM---LNLK---PNSVTLVSILSACARIGALMCGKEIHAHALRIGVAF--- 532 (608)
Q Consensus 462 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~---~~~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p--- 532 (608)
....+..+...|...|++++|++.+++.. .... ....++..+...+...|++++|.+.++++.+.....
T Consensus 262 --~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 339 (411)
T 4a1s_A 262 --ERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDR 339 (411)
T ss_dssp --HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred --HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence 01134445555555566666666655554 1111 113456666777777777777777777666432111
Q ss_pred --CccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 533 --DGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 533 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
....+..+..+|.+.|++++|.+.++++
T Consensus 340 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 340 IGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 1335667778888888888888887776
No 66
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.36 E-value=7.4e-12 Score=124.22 Aligned_cols=260 Identities=15% Similarity=0.116 Sum_probs=116.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC----cchHHHHHHHhcCCCChhhHHHHHHHHHHh----CCCC-chhHH
Q 007329 165 NVLIGGYAKAGFFDEALSLYQRMFWVGGVKPD----VYTFPCVLRTCGGVPDLKRGKEVHVHVIRF----GYEA-DVDVV 235 (608)
Q Consensus 165 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~ 235 (608)
......+...|++++|+..|++..+.. +.+ ...+..+...+...|++++|...+++..+. +..| ...++
T Consensus 13 ~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 13 ALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 333444444555555555555544432 111 123444444444455555555544443322 1111 12344
Q ss_pred HHHHHHHHhcCCHHHHHHHHccCCCC-----C----HhHHHHHHHHHHhcCC--------------------hhHHHHHH
Q 007329 236 NALITMYVKCGDLVRARLVFDGMPKR-----D----RISWNAMISGYFENGE--------------------YMKGLMLF 286 (608)
Q Consensus 236 ~~li~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~~~--------------------~~~a~~~~ 286 (608)
..+...|...|++++|...+++..+. + ..++..+...|...|+ +++|.+.+
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 170 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY 170 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 44555555555555555555443321 1 2245555555555555 55555555
Q ss_pred HHHHHC----CCCC-ChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCC-CC----cccchHHHHHHHhcCChHHHHHHH
Q 007329 287 IMMREV----LVDP-DFMTLSSVISASELVGDEKLGREVHGYVIKMGFS-DD----VSVCNPLIKMYLSFGNREEGEKVF 356 (608)
Q Consensus 287 ~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~ 356 (608)
.+.... +..+ ...++..+...+...|++++|...+++..+.... ++ ..++..+...|...|++++|...+
T Consensus 171 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 250 (406)
T 3sf4_A 171 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 250 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 544321 1011 1223444455555566666666665555433100 01 114444555555555555555555
Q ss_pred hhCCC-----CC----hhhHHHHHHHHHcCCCchHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCChHHHHHHH
Q 007329 357 SRMES-----KD----VVSWTTMISCYEGSVLPDKAVETYQMMEAEGS-MPD----EITIASVLSACACLGNLDLGIKLH 422 (608)
Q Consensus 357 ~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~~~~a~~~~ 422 (608)
++..+ .+ ..++..+...|...|++++|...+++..+... ..+ ..++..+...+...|++++|.+.+
T Consensus 251 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 330 (406)
T 3sf4_A 251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFA 330 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44432 11 23344445555555555555555555443210 001 233444445555555555555555
Q ss_pred HHHH
Q 007329 423 QLAM 426 (608)
Q Consensus 423 ~~~~ 426 (608)
+...
T Consensus 331 ~~al 334 (406)
T 3sf4_A 331 EKHL 334 (406)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.35 E-value=1.7e-10 Score=109.51 Aligned_cols=214 Identities=10% Similarity=-0.010 Sum_probs=144.6
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------ccCCh-------HHHHHHHHHHHHhCCCCchhHHHHHHHHhHh
Q 007329 381 DKAVETYQMMEAEGSMPDEITIASVLSACA-------CLGNL-------DLGIKLHQLAMRTGLISYIIIANTLIDMYSK 446 (608)
Q Consensus 381 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 446 (608)
++|..+|++..... +-+...|..+...+. +.|++ ++|..+++..++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 46666777766642 224455555555543 34665 7777777777763113445577777777777
Q ss_pred cCCHHHHHHHHccCCC--C-Ccc-cHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHh-ccCcHHHHHHH
Q 007329 447 CKCIDKALEVFHQIPD--K-NVI-SWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACA-RIGALMCGKEI 521 (608)
Q Consensus 447 ~g~~~~A~~~~~~~~~--~-~~~-~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~-~~~~~~~a~~~ 521 (608)
.|++++|.++|++..+ | +.. .|..++..+.+.|++++|..+|++.+...+++...|........ ..|++++|..+
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~ 191 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKI 191 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888888777653 2 233 67777777778888888888888887333444445544333322 35888888888
Q ss_pred HHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc-C----C---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 522 HAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN-E----R---DVSAWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 522 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~----~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
|+++++..+. +...|..++..+.+.|++++|..+|+++ . + ....|..++..+...|+.+.|..+++++.+.
T Consensus 192 ~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 192 FELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888776544 5677777888888888888888888877 2 1 3557888888888888888888888888775
Q ss_pred CCCCC
Q 007329 594 KGNWR 598 (608)
Q Consensus 594 g~~p~ 598 (608)
.|+
T Consensus 271 --~p~ 273 (308)
T 2ond_A 271 --FRE 273 (308)
T ss_dssp --TTT
T ss_pred --ccc
Confidence 555
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.35 E-value=4.1e-12 Score=122.30 Aligned_cols=268 Identities=14% Similarity=0.099 Sum_probs=175.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----hhHHHHHHHHHhhcCChhhHHHHHHHHHHh----CCC-CCccc
Q 007329 265 SWNAMISGYFENGEYMKGLMLFIMMREVLVDPD----FMTLSSVISASELVGDEKLGREVHGYVIKM----GFS-DDVSV 335 (608)
Q Consensus 265 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~ 335 (608)
.+......+...|++++|...|++..+.... + ...+..+...+...|++++|...++...+. +.. ....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 4555677889999999999999999886322 2 356778888899999999999999987654 211 12456
Q ss_pred chHHHHHHHhcCChHHHHHHHhhCCC-----CC----hhhHHHHHHHHHcCCC--------------------chHHHHH
Q 007329 336 CNPLIKMYLSFGNREEGEKVFSRMES-----KD----VVSWTTMISCYEGSVL--------------------PDKAVET 386 (608)
Q Consensus 336 ~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~~~--------------------~~~a~~~ 386 (608)
+..+...|...|++++|...+++..+ ++ ..++..+...|...|+ +++|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 78889999999999999999988754 22 3367788888999999 8888888
Q ss_pred HHHHHHC----CCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC-CchhHHHHHHHHhHhcCCHHHHHHHHccC
Q 007329 387 YQMMEAE----GSMP-DEITIASVLSACACLGNLDLGIKLHQLAMRTGLI-SYIIIANTLIDMYSKCKCIDKALEVFHQI 460 (608)
Q Consensus 387 ~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 460 (608)
+++.... +..+ ....+..+...+...|+++.|...++...+.... .+..
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~------------------------- 220 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA------------------------- 220 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH-------------------------
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChH-------------------------
Confidence 8776532 1111 1234555666666777777777776665532100 0000
Q ss_pred CCCCcccHHHHHHHHHhCCCchHHHHHHHHhHh--CCCCC----HHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCC--
Q 007329 461 PDKNVISWTSIILGLRLNNRSFEALIFFRKMML--NLKPN----SVTLVSILSACARIGALMCGKEIHAHALRIGVAF-- 532 (608)
Q Consensus 461 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~--~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-- 532 (608)
.....+..+...+...|++++|.+.+++... ....+ ..++..+...+...|++++|...++++.+.....
T Consensus 221 --~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 298 (338)
T 3ro2_A 221 --AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD 298 (338)
T ss_dssp --HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred --HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Confidence 0011344455555555566666655555541 00111 3456666677777777777777777665432111
Q ss_pred ---CccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 533 ---DGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 533 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
...++..+...|.+.|++++|.+.++++
T Consensus 299 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 299 RIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 1335666777888888888888887765
No 69
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.33 E-value=7.2e-11 Score=102.63 Aligned_cols=161 Identities=9% Similarity=-0.009 Sum_probs=106.5
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCC---CCCcccHHHHHHH
Q 007329 398 DEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIP---DKNVISWTSIILG 474 (608)
Q Consensus 398 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~ 474 (608)
+...|..+...+...|++++|++.|++..+.. +-+...+..+..+|.+.|++++|...+.... ..+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 34455556666666666666666666666554 3445556666666666666666666666544 2233455555666
Q ss_pred HHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHH
Q 007329 475 LRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAW 554 (608)
Q Consensus 475 ~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 554 (608)
+...++++.|.+.+.+.....+.+...+..+...+...|++++|.+.++++.+..+. +...+..++.+|.+.|++++|.
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHHHH
Confidence 667777777777777776444556667777777777778888888888777776654 5667777777888888888888
Q ss_pred HHHHhc
Q 007329 555 NQFNSN 560 (608)
Q Consensus 555 ~~~~~~ 560 (608)
+.|+++
T Consensus 162 ~~~~~a 167 (184)
T 3vtx_A 162 KYFKKA 167 (184)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887776
No 70
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.30 E-value=3.6e-12 Score=121.32 Aligned_cols=163 Identities=14% Similarity=0.045 Sum_probs=115.6
Q ss_pred hHHHHHHHHhCCChHHHHHHHHHHhhc-------CCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhc------C-Cc
Q 007329 63 PNSRLNELCLNGSLEQALKYLDSMQEL-------NICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTM------S-HL 128 (608)
Q Consensus 63 ~~~ll~~~~~~~~~~~A~~~~~~~~~~-------g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~-~~ 128 (608)
+..+...+...|++++|+..|+++.+. ........+..+...+...|++++|...++..++.. . ..
T Consensus 30 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 109 (311)
T 3nf1_A 30 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPA 109 (311)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChH
Confidence 677888899999999999999998763 222245567777788888999999999998887652 1 22
Q ss_pred chhHHhHHHHHhhhcCChhhHHHHHcccCC-----------CCcchHHHHHHHHHhcCChhHHHHHHHHHHhc-----CC
Q 007329 129 SVRLGNAFLSMFVKFGDLGHAWYVFGKMCD-----------RDLFSWNVLIGGYAKAGFFDEALSLYQRMFWV-----GG 192 (608)
Q Consensus 129 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~ 192 (608)
....+..+...|...|++++|...|++..+ ....++..+...+...|++++|++++++..+. ++
T Consensus 110 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 189 (311)
T 3nf1_A 110 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGP 189 (311)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Confidence 355677778888888888888888877632 12345667777777888888888888777653 00
Q ss_pred CCC-CcchHHHHHHHhcCCCChhhHHHHHHHHHH
Q 007329 193 VKP-DVYTFPCVLRTCGGVPDLKRGKEVHVHVIR 225 (608)
Q Consensus 193 ~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 225 (608)
..| ...++..+...+...|++++|.+.++++.+
T Consensus 190 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 190 DDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 112 233566666677777777777777777665
No 71
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.30 E-value=2.2e-10 Score=99.40 Aligned_cols=164 Identities=10% Similarity=-0.004 Sum_probs=140.9
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHh
Q 007329 434 IIIANTLIDMYSKCKCIDKALEVFHQIPD---KNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACA 510 (608)
Q Consensus 434 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~ 510 (608)
...+..+...+...|++++|.+.++++.+ .+...+..+...+...|++++|.+.++++....+.+...+..+...+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 34566677888889999999999998874 345678888899999999999999999998555667888999999999
Q ss_pred ccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007329 511 RIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEEF 586 (608)
Q Consensus 511 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~ 586 (608)
..|++++|.+.++++.+..+. +...+..++.+|...|++++|.+.++++ +.+...|..+...+...|++++|.+.
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999987654 6778888999999999999999999988 55788999999999999999999999
Q ss_pred HHHHHHcCCCCCch
Q 007329 587 FRKMIDSKGNWRKL 600 (608)
Q Consensus 587 ~~~m~~~g~~p~~~ 600 (608)
+++..+. .|+..
T Consensus 167 ~~~~~~~--~~~~~ 178 (186)
T 3as5_A 167 FKKANEL--DEGAS 178 (186)
T ss_dssp HHHHHHH--HHCCC
T ss_pred HHHHHHc--CCCch
Confidence 9999875 44443
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.30 E-value=2.6e-12 Score=122.30 Aligned_cols=228 Identities=11% Similarity=0.011 Sum_probs=134.3
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHh------CC-C
Q 007329 366 SWTTMISCYEGSVLPDKAVETYQMMEAE-------GSMPDEITIASVLSACACLGNLDLGIKLHQLAMRT------GL-I 431 (608)
Q Consensus 366 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~ 431 (608)
.+..+...+...|++++|..+++++.+. ........+..+...+...|++++|...++.+.+. +- +
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 4455555555666666666666555542 11122344555566666666666666666655543 11 2
Q ss_pred CchhHHHHHHHHhHhcCCHHHHHHHHccCCC-------C----CcccHHHHHHHHHhCCCchHHHHHHHHhHh-------
Q 007329 432 SYIIIANTLIDMYSKCKCIDKALEVFHQIPD-------K----NVISWTSIILGLRLNNRSFEALIFFRKMML------- 493 (608)
Q Consensus 432 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~------- 493 (608)
.....+..+...|...|++++|.+.|++..+ + ....+..+...+...|++++|+++++++..
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 188 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG 188 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence 2344556666666666777766666665441 1 124566677778888888888888888761
Q ss_pred CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhC-------CCCC-ccHHH------HHHHHhHhcCCHHHHHHHHH
Q 007329 494 NLKP-NSVTLVSILSACARIGALMCGKEIHAHALRIG-------VAFD-GFLPN------ALLDMYVRCGRMKPAWNQFN 558 (608)
Q Consensus 494 ~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------~~p~-~~~~~------~l~~~~~~~g~~~~A~~~~~ 558 (608)
+..| ...++..+...+...|++++|.+.++++.+.. ..+. ...+. .+...+...+.+.+|...++
T Consensus 189 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 268 (311)
T 3nf1_A 189 PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYK 268 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC----
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHh
Confidence 1123 34467788888889999999999998887531 1121 22222 22233444555666666666
Q ss_pred hc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 559 SN----ERDVSAWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 559 ~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
.. +.+..+|..+...|...|++++|.+++++.++.
T Consensus 269 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 269 ACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp -----CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 66 224567889999999999999999999998764
No 73
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.28 E-value=1.5e-10 Score=113.85 Aligned_cols=219 Identities=11% Similarity=-0.118 Sum_probs=148.1
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC-----C----ChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCC-CCC-----HHHHH
Q 007329 339 LIKMYLSFGNREEGEKVFSRMES-----K----DVVSWTTMISCYEGSVLPDKAVETYQMMEAEGS-MPD-----EITIA 403 (608)
Q Consensus 339 l~~~~~~~~~~~~a~~~~~~~~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~-----~~t~~ 403 (608)
....+...|++++|...|++..+ + ...++..+...|...|++++|+..+++..+.-. .++ ..++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 44556667777777777766543 2 224566777777788888888887777654210 111 34667
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHhCCC-C----chhHHHHHHHHhHhcCCHHHHHHHHccCCC-----CC----cccHH
Q 007329 404 SVLSACACLGNLDLGIKLHQLAMRTGLI-S----YIIIANTLIDMYSKCKCIDKALEVFHQIPD-----KN----VISWT 469 (608)
Q Consensus 404 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~ 469 (608)
.+...|...|++++|...++...+.... . ...++..+..+|...|++++|.+.|++..+ .+ ..++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7777888888888888888776643111 1 123667788888888888888888877653 22 24577
Q ss_pred HHHHHHHhCCCchHHHHHHHHhH--h---CCCCCHHHHHHHHHHHhccCc---HHHHHHHHHHHHHhCCCCC-ccHHHHH
Q 007329 470 SIILGLRLNNRSFEALIFFRKMM--L---NLKPNSVTLVSILSACARIGA---LMCGKEIHAHALRIGVAFD-GFLPNAL 540 (608)
Q Consensus 470 ~l~~~~~~~~~~~~A~~~~~~m~--~---~~~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~p~-~~~~~~l 540 (608)
.+...+.+.|++++|.+.+++.. . +.+.....+..+...+...|+ +++|..++++. +..|+ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 78888888999999999988877 1 111222345667778888888 66666666554 33222 3466678
Q ss_pred HHHhHhcCCHHHHHHHHHhc
Q 007329 541 LDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 541 ~~~~~~~g~~~~A~~~~~~~ 560 (608)
...|...|++++|.+.++++
T Consensus 346 a~~y~~~g~~~~A~~~~~~a 365 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKV 365 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 89999999999999988875
No 74
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.25 E-value=7.9e-11 Score=118.84 Aligned_cols=208 Identities=7% Similarity=-0.131 Sum_probs=157.0
Q ss_pred hHHHHHHHhhCCC---CChhhHHHHHHHHHcCCCc-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 007329 349 REEGEKVFSRMES---KDVVSWTTMISCYEGSVLP-DKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQL 424 (608)
Q Consensus 349 ~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 424 (608)
++++...+++... .+...|..+...|...|++ ++|++.|++..+.. .-+...+..+...|...|++++|.+.++.
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444444332 3556667777777777787 88888887777653 22466777777777888888888888877
Q ss_pred HHHhCCCCchhHHHHHHHHhHhc---------CCHHHHHHHHccCC---CCCcccHHHHHHHHHhC--------CCchHH
Q 007329 425 AMRTGLISYIIIANTLIDMYSKC---------KCIDKALEVFHQIP---DKNVISWTSIILGLRLN--------NRSFEA 484 (608)
Q Consensus 425 ~~~~~~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~--------~~~~~A 484 (608)
+.+.. |+...+..+...|... |++++|.+.|++.. ..+...|..+..+|... |++++|
T Consensus 163 al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 163 ALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 77654 4457777777777777 88888888887765 23456777788888877 889999
Q ss_pred HHHHHHhHhCCC---CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 485 LIFFRKMMLNLK---PNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 485 ~~~~~~m~~~~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
++.|++...-.+ .+...|..+..++...|++++|.+.++++.+..+. +...+..+..++...|++++|.+.+.++
T Consensus 241 ~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 241 LSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999983333 57888999999999999999999999999988765 5667888999999999999999877776
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.25 E-value=2.8e-10 Score=111.59 Aligned_cols=223 Identities=15% Similarity=0.030 Sum_probs=166.6
Q ss_pred HHHHHcCCCchHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHhCC-----C-CchhHHHH
Q 007329 371 ISCYEGSVLPDKAVETYQMMEAEGS-MPD----EITIASVLSACACLGNLDLGIKLHQLAMRTGL-----I-SYIIIANT 439 (608)
Q Consensus 371 i~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~-~~~~~~~~ 439 (608)
...+...|++++|+..|++..+... .++ ...+..+...|...|+++.|...++...+... . ....+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3456678888888888888765421 122 34567777788888888888888887765311 1 12456677
Q ss_pred HHHHhHhcCCHHHHHHHHccCCC-----CC----cccHHHHHHHHHhCCCchHHHHHHHHhHh-----CCCCCHHHHHHH
Q 007329 440 LIDMYSKCKCIDKALEVFHQIPD-----KN----VISWTSIILGLRLNNRSFEALIFFRKMML-----NLKPNSVTLVSI 505 (608)
Q Consensus 440 li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~-----~~~p~~~~~~~l 505 (608)
+...|...|++++|.+.|++..+ ++ ..++..+...|...|++++|++.+++... +.+....++..+
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 267 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGL 267 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHH
Confidence 88888888998888888876652 12 24677788899999999999999999884 555556788899
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhCCCC-C---ccHHHHHHHHhHhcCC---HHHHHHHHHhcC---CCHHHHHHHHHHHH
Q 007329 506 LSACARIGALMCGKEIHAHALRIGVAF-D---GFLPNALLDMYVRCGR---MKPAWNQFNSNE---RDVSAWNILLTGYA 575 (608)
Q Consensus 506 l~~~~~~~~~~~a~~~~~~~~~~~~~p-~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~---~~~~~~~~l~~~~~ 575 (608)
...+.+.|++++|...++++.+..... + ...+..+...|...|+ +++|...+++.. .....+..+...|.
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Confidence 999999999999999999998764332 1 2345566777788888 899999998872 22346778999999
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 007329 576 ERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 576 ~~g~~~~A~~~~~~m~~~ 593 (608)
..|++++|.+.|++..+.
T Consensus 348 ~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 348 SSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 999999999999988753
No 76
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.24 E-value=6.5e-10 Score=105.43 Aligned_cols=178 Identities=7% Similarity=0.016 Sum_probs=90.4
Q ss_pred hHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchh-HHHHHHHHhHhcCCHHHHHHHHc
Q 007329 381 DKAVETYQMMEAEGSMP-DEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYII-IANTLIDMYSKCKCIDKALEVFH 458 (608)
Q Consensus 381 ~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~ 458 (608)
++|..+|++..+. +.| +...|..++..+.+.|+++.|..+|+.+.+.. +.+.. .|..++..+.+.|++++|..+|+
T Consensus 81 ~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 158 (308)
T 2ond_A 81 DEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 4555555555442 012 23344445555555555555555555554422 11122 45555555555555555555555
Q ss_pred cCCCCC---cccHHHHHHHH-HhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhC-CCC-
Q 007329 459 QIPDKN---VISWTSIILGL-RLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIG-VAF- 532 (608)
Q Consensus 459 ~~~~~~---~~~~~~l~~~~-~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~p- 532 (608)
+..+.+ ...|....... ...|++++|..+|++.+...+.+...+..++..+.+.|++++|..+|+++.+.. +.|
T Consensus 159 ~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~ 238 (308)
T 2ond_A 159 KAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 238 (308)
T ss_dssp HHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHH
Confidence 544211 12222211111 124666666666666663333455566666666666666666666666666642 233
Q ss_pred -CccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 533 -DGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 533 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
....|..++..+.+.|+.++|..+++++
T Consensus 239 ~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 239 KSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp GCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2345566666666666666666666665
No 77
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.21 E-value=2e-10 Score=120.63 Aligned_cols=158 Identities=11% Similarity=0.095 Sum_probs=116.1
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHh
Q 007329 434 IIIANTLIDMYSKCKCIDKALEVFHQIPD---KNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACA 510 (608)
Q Consensus 434 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~ 510 (608)
...++.|..+|.+.|++++|++.|++..+ .+...|+.+..+|.+.|++++|++.|++.++-.+-+...|..+..++.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~ 88 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK 88 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 44556666666666666666666665542 234566777777777777777777777777434445677888888888
Q ss_pred ccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc---C-CCHHHHHHHHHHHHhcCCHHHHHHH
Q 007329 511 RIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN---E-RDVSAWNILLTGYAERGQGALAEEF 586 (608)
Q Consensus 511 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~-~~~~~~~~l~~~~~~~g~~~~A~~~ 586 (608)
..|++++|++.++++++..+. +...|..++.+|.+.|++++|++.|+++ . .+...|..+...|...|++++|.+.
T Consensus 89 ~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~ 167 (723)
T 4gyw_A 89 EMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDER 167 (723)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHH
Confidence 888888888888888877655 5677788888888888888888888877 3 4577888888888888888888888
Q ss_pred HHHHHH
Q 007329 587 FRKMID 592 (608)
Q Consensus 587 ~~~m~~ 592 (608)
++++++
T Consensus 168 ~~kal~ 173 (723)
T 4gyw_A 168 MKKLVS 173 (723)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887765
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.18 E-value=1.1e-08 Score=100.11 Aligned_cols=256 Identities=11% Similarity=-0.049 Sum_probs=126.4
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCChh----HHHHHHHHHhhcCChhhHHHHHHHHHHhCCC-CC----cccchHHHH
Q 007329 271 SGYFENGEYMKGLMLFIMMREVLVDPDFM----TLSSVISASELVGDEKLGREVHGYVIKMGFS-DD----VSVCNPLIK 341 (608)
Q Consensus 271 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~ 341 (608)
..+...|++++|...+++........+.. .+..+...+...|+++.|...+++..+..-. .+ ..++..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34445566666666666555432111111 2333334455556666666666555432100 01 112334455
Q ss_pred HHHhcCChHHHHHHHhhCCC-------C----ChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCC--C--CHHHHHHHH
Q 007329 342 MYLSFGNREEGEKVFSRMES-------K----DVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSM--P--DEITIASVL 406 (608)
Q Consensus 342 ~~~~~~~~~~a~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p--~~~t~~~ll 406 (608)
.+...|++++|...+++... + ....+..+...+...|++++|...+++....... + ...++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 55566666666655554432 1 1123444555666677777777777666543211 1 134555666
Q ss_pred HHHHccCChHHHHHHHHHHHHhCCCCch-hHHH-----HHHHHhHhcCCHHHHHHHHccCCCCCc-------ccHHHHHH
Q 007329 407 SACACLGNLDLGIKLHQLAMRTGLISYI-IIAN-----TLIDMYSKCKCIDKALEVFHQIPDKNV-------ISWTSIIL 473 (608)
Q Consensus 407 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~li~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~l~~ 473 (608)
..+...|++++|...++........++. ..+. ..+..+...|++++|...+++...+.. ..+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 6677777777777777766543211111 1111 222335567777777777766654321 12344455
Q ss_pred HHHhCCCchHHHHHHHHhH---h--CCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHH
Q 007329 474 GLRLNNRSFEALIFFRKMM---L--NLKPNS-VTLVSILSACARIGALMCGKEIHAHAL 526 (608)
Q Consensus 474 ~~~~~~~~~~A~~~~~~m~---~--~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~ 526 (608)
.+...|++++|...+++.. . +..++. ..+..+..++...|+.++|...++++.
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 5666666666666666554 1 111111 133344444555555555555555444
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.15 E-value=1.7e-08 Score=98.73 Aligned_cols=260 Identities=13% Similarity=0.012 Sum_probs=171.3
Q ss_pred HHHHHhCCChHHHHHHHHHHhhcCCCCChh----hHHHHHHHhhccCCchhhhHHHHHHHHhcCCc-c----hhHHhHHH
Q 007329 67 LNELCLNGSLEQALKYLDSMQELNICVDED----ALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHL-S----VRLGNAFL 137 (608)
Q Consensus 67 l~~~~~~~~~~~A~~~~~~~~~~g~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~ 137 (608)
-..+...|++++|+..+++........+.. .+..+...+...|++++|...++......... + ...+..+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345667999999999999987754322222 34555567788999999999999887654321 1 23356677
Q ss_pred HHhhhcCChhhHHHHHcccCC-------C----CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-CC--CcchHHHH
Q 007329 138 SMFVKFGDLGHAWYVFGKMCD-------R----DLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGV-KP--DVYTFPCV 203 (608)
Q Consensus 138 ~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~p--~~~~~~~l 203 (608)
..+...|++++|...+++... + ....+..+...+...|++++|...+++......- .+ ....+..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 788889999999998887622 1 1234566777888999999999999988764311 11 12356667
Q ss_pred HHHhcCCCChhhHHHHHHHHHHhCCCCch-hHHH-----HHHHHHHhcCCHHHHHHHHccCCCCC-------HhHHHHHH
Q 007329 204 LRTCGGVPDLKRGKEVHVHVIRFGYEADV-DVVN-----ALITMYVKCGDLVRARLVFDGMPKRD-------RISWNAMI 270 (608)
Q Consensus 204 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~-----~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li 270 (608)
...+...|++++|...+++..+....++. ..+. ..+..+...|++++|...+++....+ ...+..+.
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 77788889999999999888765322221 1111 23344778899999988888776542 22456677
Q ss_pred HHHHhcCChhHHHHHHHHHHHC----CCCCCh-hHHHHHHHHHhhcCChhhHHHHHHHHHH
Q 007329 271 SGYFENGEYMKGLMLFIMMREV----LVDPDF-MTLSSVISASELVGDEKLGREVHGYVIK 326 (608)
Q Consensus 271 ~~~~~~~~~~~a~~~~~~m~~~----~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 326 (608)
..+...|++++|...+++.... |..++. ..+..+..++...|+.++|...++....
T Consensus 261 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7788888888888888776542 211111 1334444555566666666666665543
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.14 E-value=3.7e-09 Score=103.52 Aligned_cols=158 Identities=10% Similarity=-0.047 Sum_probs=78.8
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCC----cchHHHHHHHhcCCCChhhHHHHHHHHHHhCC-----C-CchhHHHHHH
Q 007329 170 GYAKAGFFDEALSLYQRMFWVGGVKPD----VYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGY-----E-ADVDVVNALI 239 (608)
Q Consensus 170 ~~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-----~-~~~~~~~~li 239 (608)
.+...|++++|++.|++..+...-.++ ...+..+...+...|+++.|...+++..+.-. . ....+++.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 344556666666666655432101111 22344445555555555555555555443210 0 0133455555
Q ss_pred HHHHhcCCHHHHHHHHccCCC-----C----CHhHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCChhHHHHHHH
Q 007329 240 TMYVKCGDLVRARLVFDGMPK-----R----DRISWNAMISGYFENGEYMKGLMLFIMMREV----LVDPDFMTLSSVIS 306 (608)
Q Consensus 240 ~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~~ll~ 306 (608)
..|...|++++|.+.|++..+ . ...+++.+...|...|++++|.+.+++..+. +.+....++..+..
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 556666666666555544332 0 1234555566666666666666666655441 11112344555555
Q ss_pred HHhhcCChhhHHHHHHHHHHh
Q 007329 307 ASELVGDEKLGREVHGYVIKM 327 (608)
Q Consensus 307 ~~~~~~~~~~a~~~~~~~~~~ 327 (608)
.+.+.|++++|...++...+.
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDH 290 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 566666666666666665544
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.14 E-value=9.4e-10 Score=99.26 Aligned_cols=195 Identities=8% Similarity=-0.037 Sum_probs=139.3
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC--C-CcccHHHHHH
Q 007329 397 PDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPD--K-NVISWTSIIL 473 (608)
Q Consensus 397 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~ 473 (608)
.|+..+......+...|++++|...|+...+...+++...+..+..++.+.|++++|.+.|++..+ | +...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 456778888888889999999999999888877436666666688888888999999888887663 2 3456777888
Q ss_pred HHHhCCCchHHHHHHHHhHhCCCCCH-------HHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCC-CccHHHHHHHHhH
Q 007329 474 GLRLNNRSFEALIFFRKMMLNLKPNS-------VTLVSILSACARIGALMCGKEIHAHALRIGVAF-DGFLPNALLDMYV 545 (608)
Q Consensus 474 ~~~~~~~~~~A~~~~~~m~~~~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 545 (608)
.+...|++++|++.+++.....+.+. ..|..+...+...|++++|.+.++++++..+.. +...+..+..+|.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 88888888888888888884444455 457777777788888888888888887653210 1345666677776
Q ss_pred hcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 546 RCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 546 ~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
..|+. .++++ ..+...|.... ....+.+++|...+++..+. .|++.
T Consensus 165 ~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~ 214 (228)
T 4i17_A 165 NNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNRT 214 (228)
T ss_dssp HHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCH
Confidence 55543 22222 33444444433 33456679999999999986 77766
No 82
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.13 E-value=9.4e-10 Score=95.37 Aligned_cols=161 Identities=16% Similarity=0.079 Sum_probs=85.6
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhH
Q 007329 366 SWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYS 445 (608)
Q Consensus 366 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 445 (608)
.|..+...+...|++++|...++++.+.. ..+...+..+...+...|+++.|...++.+.+.. +.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34555556666666666766666665442 2245555666666666666666666666665543 233444444444455
Q ss_pred hcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 007329 446 KCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHA 525 (608)
Q Consensus 446 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 525 (608)
..|++++|.+.+ +++....+.+...+..+...+...|++++|...++++
T Consensus 88 ~~~~~~~A~~~~-------------------------------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 136 (186)
T 3as5_A 88 QVQKYDLAVPLL-------------------------------IKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIA 136 (186)
T ss_dssp HHTCHHHHHHHH-------------------------------HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhcCHHHHHHHH-------------------------------HHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 555555555444 4444223334444555555555555555555555555
Q ss_pred HHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 526 LRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 526 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
.+..+. +...+..++..|...|++++|.+.++++
T Consensus 137 ~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~ 170 (186)
T 3as5_A 137 LGLRPN-EGKVHRAIAFSYEQMGRHEEALPHFKKA 170 (186)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhcCcc-chHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 544322 3444455555555555555555555443
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.10 E-value=1.3e-09 Score=114.52 Aligned_cols=159 Identities=9% Similarity=-0.006 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC---CCcccHHHHHHHHH
Q 007329 400 ITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPD---KNVISWTSIILGLR 476 (608)
Q Consensus 400 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 476 (608)
..++.+...+.+.|++++|++.|++.++.. +-+...+..+..+|.+.|++++|++.|++..+ .+...|..+..+|.
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~ 88 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK 88 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 455556666666666666666666666554 33455556666666666666666666665542 23456666777777
Q ss_pred hCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHH
Q 007329 477 LNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQ 556 (608)
Q Consensus 477 ~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 556 (608)
+.|++++|++.|++.++-.+-+...|..+..++...|++++|++.++++++..+. +...+..|+.+|...|++++|.+.
T Consensus 89 ~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A~~~ 167 (723)
T 4gyw_A 89 EMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDYDER 167 (723)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHHHHH
Confidence 7777777777777776333445667777777777777777777777777776654 566677777777777877777777
Q ss_pred HHhc
Q 007329 557 FNSN 560 (608)
Q Consensus 557 ~~~~ 560 (608)
++++
T Consensus 168 ~~ka 171 (723)
T 4gyw_A 168 MKKL 171 (723)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7665
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.08 E-value=5.6e-09 Score=94.12 Aligned_cols=187 Identities=9% Similarity=-0.033 Sum_probs=109.4
Q ss_pred hhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 007329 364 VVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDM 443 (608)
Q Consensus 364 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 443 (608)
...+......+...|++++|+..|++..+....++...+..+...+...|++++|...++...+.. +.+...+..+..+
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 85 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHH
Confidence 344555555666666666666666666655433455555556666666666666666666666544 3345556666666
Q ss_pred hHhcCCHHHHHHHHccCCC--C-Cc-------ccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCC---HHHHHHHHHHHh
Q 007329 444 YSKCKCIDKALEVFHQIPD--K-NV-------ISWTSIILGLRLNNRSFEALIFFRKMMLNLKPN---SVTLVSILSACA 510 (608)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~~--~-~~-------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~---~~~~~~ll~~~~ 510 (608)
|.+.|++++|...|++..+ | +. ..|..+...+...|++++|++.|++.+ ...|+ ...+..+..++.
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT-DVTSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSSCHHHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH-hcCCCcccHHHHHHHHHHHH
Confidence 6666666666666665542 2 22 245666667777788888888888777 33443 455666666664
Q ss_pred ccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 511 RIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 511 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
..| ..+++++...+.. +...|... .....+.+++|...++++
T Consensus 165 ~~~-----~~~~~~a~~~~~~-~~~~~~~~--~~~~~~~~~~A~~~~~~a 206 (228)
T 4i17_A 165 NNG-----ADVLRKATPLASS-NKEKYASE--KAKADAAFKKAVDYLGEA 206 (228)
T ss_dssp HHH-----HHHHHHHGGGTTT-CHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHhcccC-CHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 433 3334444443322 22223222 233456677888888777
No 85
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.07 E-value=4.9e-09 Score=85.26 Aligned_cols=126 Identities=17% Similarity=0.202 Sum_probs=108.0
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHh
Q 007329 467 SWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVR 546 (608)
Q Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 546 (608)
.|..+...+...|++++|..+++++....+.+...+..+...+...|++++|..+++++.+.++. +...+..++..+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHH
Confidence 46677888888899999999999988444557778888889999999999999999999887654 56678888999999
Q ss_pred cCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 547 CGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 547 ~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
.|++++|.+.++++ +.+...|..++..+...|++++|.+.++++.+.
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 99999999999887 456888999999999999999999999999875
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.06 E-value=6.9e-10 Score=103.69 Aligned_cols=195 Identities=11% Similarity=-0.007 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHh------CC-CCchhHHHHHHHHhHhcCCHHHHHHHHccCCC-------C-
Q 007329 399 EITIASVLSACACLGNLDLGIKLHQLAMRT------GL-ISYIIIANTLIDMYSKCKCIDKALEVFHQIPD-------K- 463 (608)
Q Consensus 399 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~- 463 (608)
..++..+...+...|++++|...++.+.+. +- +....++..+...|...|++++|.+.|++..+ +
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 344555566666666666666666655543 11 12234555666666666666666666665431 1
Q ss_pred ---CcccHHHHHHHHHhCCCchHHHHHHHHhHhC-------CCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHh----
Q 007329 464 ---NVISWTSIILGLRLNNRSFEALIFFRKMMLN-------LKP-NSVTLVSILSACARIGALMCGKEIHAHALRI---- 528 (608)
Q Consensus 464 ---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-------~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---- 528 (608)
....|..+...+...|++++|++.++++... ..| ...++..+...+...|++++|.++++++.+.
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 1245666777788888888888888877611 122 3557888889999999999999999988754
Q ss_pred ---CCCC-CccHHHHHHHHhHhc------CCHHHHHHHHHhcC-C---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 529 ---GVAF-DGFLPNALLDMYVRC------GRMKPAWNQFNSNE-R---DVSAWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 529 ---~~~p-~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~-~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
...+ ....+..+...+... ..+..+...++... . ...++..+...|...|++++|.+++++.++.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1122 234444444444433 33455555555552 1 2457888999999999999999999998763
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.05 E-value=2e-09 Score=101.19 Aligned_cols=234 Identities=9% Similarity=-0.035 Sum_probs=132.4
Q ss_pred hHHHHHHHHHHhCCCCCcccchHHHHHHHhc---CChHHHHHHHhhCCCCChhhHHHHHHHHHcCCCchHHHHHHHHHHH
Q 007329 316 LGREVHGYVIKMGFSDDVSVCNPLIKMYLSF---GNREEGEKVFSRMESKDVVSWTTMISCYEGSVLPDKAVETYQMMEA 392 (608)
Q Consensus 316 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 392 (608)
+|.+++.+..+.- ++....+ .+.+. +++++|...|.+. ...|...|++++|...|.+..+
T Consensus 3 ~a~~~~~~a~k~~-~~~~~~~-----~~~~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~ 65 (292)
T 1qqe_A 3 DPVELLKRAEKKG-VPSSGFM-----KLFSGSDSYKFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAAD 65 (292)
T ss_dssp CHHHHHHHHHHHS-SCCCTHH-----HHHSCCSHHHHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHh-CcCCCcc-----hhcCCCCCccHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHH
Confidence 4566666666552 2222222 22232 2477777766553 6677888888888888877654
Q ss_pred C----CCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCCccc
Q 007329 393 E----GSMPD-EITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNVIS 467 (608)
Q Consensus 393 ~----g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 467 (608)
. |-.++ ..+|..+...|...|++++|...++...+. +...|+...+. .+
T Consensus 66 ~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---------------~~~~g~~~~~a-----------~~ 119 (292)
T 1qqe_A 66 YQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI---------------FTHRGQFRRGA-----------NF 119 (292)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------HHHTTCHHHHH-----------HH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---------------HHHcCCHHHHH-----------HH
Confidence 3 21111 356777777777778888887777766542 11122222221 23
Q ss_pred HHHHHHHHHhC-CCchHHHHHHHHhHh---CCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcc-----
Q 007329 468 WTSIILGLRLN-NRSFEALIFFRKMML---NLKPN---SVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGF----- 535 (608)
Q Consensus 468 ~~~l~~~~~~~-~~~~~A~~~~~~m~~---~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~----- 535 (608)
|+.+...|... |++++|+..|++.+. +.... ..++..+...+...|++++|...++++.+..+.....
T Consensus 120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 199 (292)
T 1qqe_A 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (292)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHH
Confidence 44555566664 666666666666651 11100 2356666777777777777777777777655443221
Q ss_pred -HHHHHHHHhHhcCCHHHHHHHHHhc---CCCH------HHHHHHHHHHH--hcCCHHHHHHHHHHHHH
Q 007329 536 -LPNALLDMYVRCGRMKPAWNQFNSN---ERDV------SAWNILLTGYA--ERGQGALAEEFFRKMID 592 (608)
Q Consensus 536 -~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~------~~~~~l~~~~~--~~g~~~~A~~~~~~m~~ 592 (608)
.+..++.+|...|++++|...+++. .|+. ..+..++.+|. ..+++++|+..|+++..
T Consensus 200 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 3555666777777777777777776 3321 12334455553 34556667666665543
No 88
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.98 E-value=3e-09 Score=99.32 Aligned_cols=219 Identities=11% Similarity=-0.049 Sum_probs=123.6
Q ss_pred CCChHHHHHHHHHHhhc-------CCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhc------C-CcchhHHhHHHH
Q 007329 73 NGSLEQALKYLDSMQEL-------NICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTM------S-HLSVRLGNAFLS 138 (608)
Q Consensus 73 ~~~~~~A~~~~~~~~~~-------g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~-~~~~~~~~~l~~ 138 (608)
.|++++|+..|++..+. .......++..+...+...|++++|...++.+++.. . .....++..+..
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 34555555555544331 112234556666677777788888888777776552 1 123456677777
Q ss_pred HhhhcCChhhHHHHHcccCC-------C----CcchHHHHHHHHHhcCChhHHHHHHHHHHhc-----CCCCC-CcchHH
Q 007329 139 MFVKFGDLGHAWYVFGKMCD-------R----DLFSWNVLIGGYAKAGFFDEALSLYQRMFWV-----GGVKP-DVYTFP 201 (608)
Q Consensus 139 ~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~~p-~~~~~~ 201 (608)
.|...|++++|...|++..+ + ...+|..+...+...|++++|++++++..+. ++-.| ...++.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 173 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN 173 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 77777888877777776621 1 2345667777777778888888877777654 10122 234566
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHhC-------CCC-chhHHHHHHHHHHhcC------CHHHHHHHHccCCCC---CHh
Q 007329 202 CVLRTCGGVPDLKRGKEVHVHVIRFG-------YEA-DVDVVNALITMYVKCG------DLVRARLVFDGMPKR---DRI 264 (608)
Q Consensus 202 ~ll~~~~~~~~~~~a~~~~~~~~~~g-------~~~-~~~~~~~li~~~~~~g------~~~~A~~~~~~~~~~---~~~ 264 (608)
.+...+...|++++|.+.+++..+.. ..+ ....+..+...+...+ .+..+...++..... ...
T Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (283)
T 3edt_B 174 NLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNT 253 (283)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 66777777777777777777776531 112 2223333333332222 233344444444432 344
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 007329 265 SWNAMISGYFENGEYMKGLMLFIMMRE 291 (608)
Q Consensus 265 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 291 (608)
++..+...|...|++++|...+++..+
T Consensus 254 ~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 254 TLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 566677777777777777777776654
No 89
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.97 E-value=3.2e-07 Score=92.31 Aligned_cols=202 Identities=9% Similarity=-0.022 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHH-HHHHccC
Q 007329 382 KAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKA-LEVFHQI 460 (608)
Q Consensus 382 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~~ 460 (608)
.+..+|+++.... .-+...|...+.-+.+.|+.+.|..+++..... +.+...+.... ...+.++. ..+.+..
T Consensus 197 Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y~----~~~e~~~~~~~l~~~~ 269 (493)
T 2uy1_A 197 RMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYYG----LVMDEEAVYGDLKRKY 269 (493)
T ss_dssp HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHH----HHTTCTHHHHHHHHHT
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHHH----hhcchhHHHHHHHHHH
Confidence 4566777776643 334666666677777788888888888888877 33333333222 11111111 1111111
Q ss_pred C------------CCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhc-cCcHHHHHHHHHHHHH
Q 007329 461 P------------DKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACAR-IGALMCGKEIHAHALR 527 (608)
Q Consensus 461 ~------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~ 527 (608)
. ......|...+..+.+.++.+.|..+|++.. ....+...|......-.. .++.+.|..+++...+
T Consensus 270 ~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~-~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~ 348 (493)
T 2uy1_A 270 SMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELG-NEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLL 348 (493)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT-TSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred HhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhh-CCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 0 0012456666777777888999999999983 222344455433322222 2369999999999987
Q ss_pred hCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007329 528 IGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSNERDVSAWNILLTGYAERGQGALAEEFFRKMID 592 (608)
Q Consensus 528 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 592 (608)
.-+. ++..+...++...+.|+.+.|..+|+++......|...+..-...|+.+.+..+++++.+
T Consensus 349 ~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er~~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 349 KHPD-STLLKEEFFLFLLRIGDEENARALFKRLEKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHSCCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6433 345667788888899999999999999966788899999888889999999999998875
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.92 E-value=4.3e-08 Score=90.36 Aligned_cols=160 Identities=9% Similarity=-0.023 Sum_probs=95.4
Q ss_pred HHHHHHhHhcCCHHHHHHHHccCCC--C-C---cccHHHHHHHHHhCCCchHHHHHHHHhHhCC--C-CCHHHHHHHHHH
Q 007329 438 NTLIDMYSKCKCIDKALEVFHQIPD--K-N---VISWTSIILGLRLNNRSFEALIFFRKMMLNL--K-PNSVTLVSILSA 508 (608)
Q Consensus 438 ~~li~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~--~-p~~~~~~~ll~~ 508 (608)
-.+...+.+.|++++|...|+++.+ | + ...+..+..++.+.|++++|+..|++.+... . .....+..+..+
T Consensus 19 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~ 98 (261)
T 3qky_A 19 FERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMC 98 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHH
Confidence 3334444445555555555554432 1 1 2234444555555555555555555555111 1 113344445555
Q ss_pred Hhc--------cCcHHHHHHHHHHHHHhCCCCCccHH-----------------HHHHHHhHhcCCHHHHHHHHHhc---
Q 007329 509 CAR--------IGALMCGKEIHAHALRIGVAFDGFLP-----------------NALLDMYVRCGRMKPAWNQFNSN--- 560 (608)
Q Consensus 509 ~~~--------~~~~~~a~~~~~~~~~~~~~p~~~~~-----------------~~l~~~~~~~g~~~~A~~~~~~~--- 560 (608)
+.. .|++++|...++++++..+. +.... ..++..|.+.|++++|...|+++
T Consensus 99 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 177 (261)
T 3qky_A 99 YYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDA 177 (261)
T ss_dssp HHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 555 56666666666666654433 22222 45678889999999999999888
Q ss_pred CCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCCch
Q 007329 561 ERD----VSAWNILLTGYAER----------GQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 561 ~~~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
.|+ ...+..+..+|... |++++|...++++++. .|++.
T Consensus 178 ~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~ 229 (261)
T 3qky_A 178 YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDSP 229 (261)
T ss_dssp CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTCT
T ss_pred CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCCh
Confidence 443 45777888888766 8889999999999886 67663
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.90 E-value=5.3e-08 Score=89.43 Aligned_cols=175 Identities=11% Similarity=-0.032 Sum_probs=91.4
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCC-----CcccHHHHHHHHHhCCCchHHHHHHHHhH
Q 007329 418 GIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDK-----NVISWTSIILGLRLNNRSFEALIFFRKMM 492 (608)
Q Consensus 418 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 492 (608)
+...+++..+.+ .++...+..+..++...|++++|++++.+.... +...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444444333 333333445555666666666666666655322 22344455566666666666666666665
Q ss_pred hCCCC-----CHHHHHHHHHH--HhccC--cHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc-C-
Q 007329 493 LNLKP-----NSVTLVSILSA--CARIG--ALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN-E- 561 (608)
Q Consensus 493 ~~~~p-----~~~~~~~ll~~--~~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~- 561 (608)
...| +..+...++.+ ....| ++++|..+|+++.+.. |+......|..++.+.|++++|.+.++.+ .
T Consensus 164 -~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 164 -NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp -HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred -hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3344 23444444444 22223 6666666666664432 22112223334666667777776666543 1
Q ss_pred -----------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 562 -----------R-DVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 562 -----------~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
| |+.+...+|......|+ +|.++++++.+. .|++.
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~hp 287 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEHA 287 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCCH
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCCh
Confidence 2 44455455555555565 666777777664 56654
No 92
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.90 E-value=8.1e-09 Score=85.88 Aligned_cols=139 Identities=5% Similarity=-0.109 Sum_probs=93.9
Q ss_pred HHHHhHhcCCHHHHHHHHccCCCC---CcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHH
Q 007329 440 LIDMYSKCKCIDKALEVFHQIPDK---NVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALM 516 (608)
Q Consensus 440 li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~ 516 (608)
|..++...|++++|++.++..... +...+..+...|.+.|++++|++.|++.++-.+-+..+|..+..++...|+++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 344556667777777777766643 23456667777778888888888888777444556777777777788888888
Q ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHH-HHhc----CCCHHHHHHHHHHHHhcCC
Q 007329 517 CGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQ-FNSN----ERDVSAWNILLTGYAERGQ 579 (608)
Q Consensus 517 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~-~~~~----~~~~~~~~~l~~~~~~~g~ 579 (608)
+|...++++++..+. +...+..+..+|.+.|++++|.+. ++++ +.++.+|......+...|+
T Consensus 83 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 888888877776655 566777777777777877665554 4554 4456667766666666664
No 93
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.88 E-value=1e-07 Score=87.59 Aligned_cols=174 Identities=10% Similarity=0.044 Sum_probs=104.8
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCC-CCchhHHHHHHHHhHhcCCHHHHHHHHccCC
Q 007329 383 AVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGL-ISYIIIANTLIDMYSKCKCIDKALEVFHQIP 461 (608)
Q Consensus 383 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 461 (608)
|+..|++..+.+ .++..++..+..++...|++++|++++...++.+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 556666665544 44555555666777777777777777776655442 2355666667777777777777777777765
Q ss_pred CCC-------cccHHHHHHH--HHh--CCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCC
Q 007329 462 DKN-------VISWTSIILG--LRL--NNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGV 530 (608)
Q Consensus 462 ~~~-------~~~~~~l~~~--~~~--~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 530 (608)
+.+ ..+...++.+ ... .+++.+|..+|+++. ...|+..+...++.++.+.|++++|.+.++.+.+.-+
T Consensus 164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~-~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELS-QTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHH-TTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 322 2333444444 222 237778888888876 3345533333444477777888888888876654310
Q ss_pred ---------CCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 531 ---------AFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 531 ---------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
.-++.+...+|......|+ +|.++++++
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL 279 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQL 279 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHH
Confidence 1145555455555555665 666777666
No 94
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.87 E-value=8.8e-08 Score=89.80 Aligned_cols=129 Identities=9% Similarity=-0.121 Sum_probs=62.8
Q ss_pred HHhHHHHHhhhcCChhhHHHHHcccCC-----CC----cchHHHHHHHHHhc-CChhHHHHHHHHHHhcCCCCCC----c
Q 007329 132 LGNAFLSMFVKFGDLGHAWYVFGKMCD-----RD----LFSWNVLIGGYAKA-GFFDEALSLYQRMFWVGGVKPD----V 197 (608)
Q Consensus 132 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~~p~----~ 197 (608)
+++.+..+|.+.|++++|+..|++..+ .+ ..+|+.+...|... |++++|++.|++..+...-..+ .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 444444444444555554444444311 01 12445555555554 6666666555555432100000 2
Q ss_pred chHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCch------hHHHHHHHHHHhcCCHHHHHHHHccCCC
Q 007329 198 YTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADV------DVVNALITMYVKCGDLVRARLVFDGMPK 260 (608)
Q Consensus 198 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~ 260 (608)
.++..+...+...|++++|...++...+....... ..+..+..++...|++++|...|++..+
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34555555556666666666666655554322211 1345555556666666666666665544
No 95
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.86 E-value=2.7e-08 Score=105.09 Aligned_cols=150 Identities=9% Similarity=-0.063 Sum_probs=67.0
Q ss_pred HcCCCchHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHh
Q 007329 375 EGSVLPDKAVETYQMME--------AEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSK 446 (608)
Q Consensus 375 ~~~~~~~~a~~~~~~m~--------~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 446 (608)
...|++++|++.+++.. +.. ..+...+..+...+...|++++|...++.+.+.. +.+...+..+..+|.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 44555555555555554 211 1123344444445555555555555555544433 2233444444444444
Q ss_pred cCCHHHHHHHHccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 007329 447 CKCIDKALEVFHQIPD---KNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHA 523 (608)
Q Consensus 447 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 523 (608)
.|++++|.+.|++..+ .+...|..+..++.+.|++++ ++.|++.++-.+.+...|..+..++.+.|++++|.+.++
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555544444331 123344444444444444444 444444442222333444444444444444444444444
Q ss_pred HHHH
Q 007329 524 HALR 527 (608)
Q Consensus 524 ~~~~ 527 (608)
++.+
T Consensus 559 ~al~ 562 (681)
T 2pzi_A 559 EVPP 562 (681)
T ss_dssp TSCT
T ss_pred hhcc
Confidence 4433
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.85 E-value=1.7e-08 Score=89.30 Aligned_cols=181 Identities=11% Similarity=-0.026 Sum_probs=121.5
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCC
Q 007329 401 TIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNR 480 (608)
Q Consensus 401 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 480 (608)
.+......+...|++++|...|+...+.. +.+...+... ....... ......+.+..+|.+.|+
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~-----~~~~~~~----------~~~~~~~~lg~~~~~~g~ 69 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWT-----NVDKNSE----------ISSKLATELALAYKKNRN 69 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHH-----HSCTTSH----------HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHh-----hhcchhh----------hhHHHHHHHHHHHHHCCC
Confidence 34444556677888888888888877654 1122222110 0000000 011223447778888899
Q ss_pred chHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCC--HHHHHHHHH
Q 007329 481 SFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGR--MKPAWNQFN 558 (608)
Q Consensus 481 ~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~ 558 (608)
+++|+..|++.+...+.+...+..+..++...|++++|...++++++..+. +...+..++.+|...|+ .+.+...++
T Consensus 70 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~ 148 (208)
T 3urz_A 70 YDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYK 148 (208)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 999999999888555557788888888999999999999999999887765 67778888888766654 455666777
Q ss_pred hc-CCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 559 SN-ERDVS--AWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 559 ~~-~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
++ .|++. .|..+..++...|++++|.+.|++.++. .|+.-
T Consensus 149 ~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~ 191 (208)
T 3urz_A 149 KLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTE 191 (208)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHH
T ss_pred HHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHH
Confidence 66 55543 3455566677788999999999998874 67654
No 97
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.85 E-value=3.4e-08 Score=84.74 Aligned_cols=153 Identities=13% Similarity=-0.011 Sum_probs=99.7
Q ss_pred HHHHHHhHhcCCHHHHHHHHccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHH-HhccC
Q 007329 438 NTLIDMYSKCKCIDKALEVFHQIPD---KNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSA-CARIG 513 (608)
Q Consensus 438 ~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~-~~~~~ 513 (608)
..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..+++.... .|+...+..+... +...+
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~-~p~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE-YQDNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG-GCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc-cCChHHHHHHHHHHHHhhc
Confidence 3445556667777777777777663 24456666777777777777777777776622 2244332222111 11222
Q ss_pred cHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc---CCC---HHHHHHHHHHHHhcCCHHHHHHHH
Q 007329 514 ALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN---ERD---VSAWNILLTGYAERGQGALAEEFF 587 (608)
Q Consensus 514 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~---~~~~~~l~~~~~~~g~~~~A~~~~ 587 (608)
...+|...++++.+..+. +...+..+..+|...|++++|...|+++ .|+ ...+..+...+...|+.++|...|
T Consensus 89 ~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 89 AESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp TSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred ccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 233467777777776554 5677777888888888888888888877 443 457888888888888888888888
Q ss_pred HHHHH
Q 007329 588 RKMID 592 (608)
Q Consensus 588 ~~m~~ 592 (608)
++.+.
T Consensus 168 ~~al~ 172 (176)
T 2r5s_A 168 RRQLY 172 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 98
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.83 E-value=1e-07 Score=77.28 Aligned_cols=57 Identities=14% Similarity=0.028 Sum_probs=24.6
Q ss_pred HHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 007329 471 IILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALR 527 (608)
Q Consensus 471 l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 527 (608)
+...+...|++++|.+.++++....+.+...+..+...+...|++++|...++++.+
T Consensus 75 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 75 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 333444444444444444444422222334444444444444444444444444443
No 99
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.83 E-value=5.9e-08 Score=100.64 Aligned_cols=146 Identities=10% Similarity=-0.046 Sum_probs=61.1
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC---CCcccHHHHHHHHHhCCCchHHHHHHH
Q 007329 413 GNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPD---KNVISWTSIILGLRLNNRSFEALIFFR 489 (608)
Q Consensus 413 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~ 489 (608)
|++++|.+.++++.+.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|++.++
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 44555555555544432 22344445555555555555555555554432 123344444455555555555555555
Q ss_pred HhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhc---CCHHHHHHHHHhc
Q 007329 490 KMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRC---GRMKPAWNQFNSN 560 (608)
Q Consensus 490 ~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~ 560 (608)
+..+..+.+...+..+..++...|++++|.+.++++.+..+. +...+..+..+|... |++++|.+.++++
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 554222333444445555555555555555555555444332 334444444455554 5555555555444
No 100
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.83 E-value=1.3e-07 Score=88.21 Aligned_cols=161 Identities=12% Similarity=0.027 Sum_probs=113.3
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC--CCcccHH-HHHHH
Q 007329 398 DEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPD--KNVISWT-SIILG 474 (608)
Q Consensus 398 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~-~l~~~ 474 (608)
+...+..+...+...|+++.|...++.+.+.. +.+...+..+...+.+.|++++|...++++.. |+..... .....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 44566677777888899999999999888776 55667788888889999999999999998874 3322221 12233
Q ss_pred HHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCC-CccHHHHHHHHhHhcCCHHHH
Q 007329 475 LRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAF-DGFLPNALLDMYVRCGRMKPA 553 (608)
Q Consensus 475 ~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 553 (608)
+.+.++.++|++.+++.....+.+...+..+...+...|++++|...++++.+..+.. +...+..++..|...|+.++|
T Consensus 195 l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a 274 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDAL 274 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHH
T ss_pred HHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcH
Confidence 5566777777777777775455566777777777777777777777777777765542 245566666777777776666
Q ss_pred HHHHHh
Q 007329 554 WNQFNS 559 (608)
Q Consensus 554 ~~~~~~ 559 (608)
...+++
T Consensus 275 ~~~~r~ 280 (287)
T 3qou_A 275 ASXYRR 280 (287)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665554
No 101
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.83 E-value=1.4e-07 Score=84.65 Aligned_cols=183 Identities=13% Similarity=0.008 Sum_probs=118.9
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCC--chhHHHHHHHHhHhcCCHHHHHHHHccCCC--CCcc----cHH
Q 007329 398 DEITIASVLSACACLGNLDLGIKLHQLAMRTGLIS--YIIIANTLIDMYSKCKCIDKALEVFHQIPD--KNVI----SWT 469 (608)
Q Consensus 398 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~ 469 (608)
+...+..+...+...|++++|...|+.+.+..... ....+..+..+|.+.|++++|...|++..+ |+.. .+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34455666777888999999999999888764221 135667788888889999999998888763 3221 344
Q ss_pred HHHHHHHh------------------CCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCC
Q 007329 470 SIILGLRL------------------NNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVA 531 (608)
Q Consensus 470 ~l~~~~~~------------------~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 531 (608)
.+..++.+ .|++++|+..|++++...+-+.......... ..+.....
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l----------~~~~~~~~----- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRL----------VFLKDRLA----- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHH----------HHHHHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHH----------HHHHHHHH-----
Confidence 44444443 3456666666666652222222222111100 00000000
Q ss_pred CCccHHHHHHHHhHhcCCHHHHHHHHHhc---CCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 532 FDGFLPNALLDMYVRCGRMKPAWNQFNSN---ERD-V---SAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 532 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~-~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
.....++..|.+.|++++|...|+++ .|+ . ..+..+..+|.+.|++++|.+.++++... .|+++
T Consensus 148 ---~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~--~~~~~ 218 (225)
T 2yhc_A 148 ---KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN--SSNTL 218 (225)
T ss_dssp ---HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC--CSCCC
T ss_pred ---HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCch
Confidence 01134677899999999999999998 444 3 56888999999999999999999999886 66654
No 102
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.82 E-value=3.1e-08 Score=91.28 Aligned_cols=181 Identities=11% Similarity=-0.044 Sum_probs=107.3
Q ss_pred CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC--CchhH
Q 007329 362 KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPD---EITIASVLSACACLGNLDLGIKLHQLAMRTGLI--SYIII 436 (608)
Q Consensus 362 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~ 436 (608)
.+...+-.+...+.+.|++++|+..|+++.+.... + ...+..+..++...|+++.|...++.+.+.... .....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 44556666667777888888888888888775311 2 456667777777888888888888877765321 22344
Q ss_pred HHHHHHHhHh--------cCCHHHHHHHHccCCC--CC-cccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHH
Q 007329 437 ANTLIDMYSK--------CKCIDKALEVFHQIPD--KN-VISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSI 505 (608)
Q Consensus 437 ~~~li~~~~~--------~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~l 505 (608)
+..+..++.+ .|++++|...|+++.+ |+ ...+..+ ..+...... -...+..+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~--------------~~~~~~~~~---~~~~~~~l 154 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDAT--------------QKIRELRAK---LARKQYEA 154 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHH--------------HHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHH--------------HHHHHHHHH---HHHHHHHH
Confidence 5555666666 6666666666665542 21 1111111 000000000 00113455
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhCCCC--CccHHHHHHHHhHhc----------CCHHHHHHHHHhc
Q 007329 506 LSACARIGALMCGKEIHAHALRIGVAF--DGFLPNALLDMYVRC----------GRMKPAWNQFNSN 560 (608)
Q Consensus 506 l~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~ 560 (608)
...+...|++++|...++++++..+.. ....+..++.+|... |++++|...++++
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~ 221 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERL 221 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHH
Confidence 667777788888888888777665432 123555666777655 7778888888777
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.80 E-value=7.2e-08 Score=82.69 Aligned_cols=158 Identities=13% Similarity=0.066 Sum_probs=119.1
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC--CCcccHHHHHHH-HHhC
Q 007329 402 IASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPD--KNVISWTSIILG-LRLN 478 (608)
Q Consensus 402 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~-~~~~ 478 (608)
+......+...|++++|...++.+.+.. +.+...+..+..++.+.|++++|...|++..+ |+...+..+... +...
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhh
Confidence 3445566778888888888888776654 45667788888888999999999999998874 333222222111 2233
Q ss_pred CCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCC-CccHHHHHHHHhHhcCCHHHHHHHH
Q 007329 479 NRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAF-DGFLPNALLDMYVRCGRMKPAWNQF 557 (608)
Q Consensus 479 ~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 557 (608)
++..+|+..+++.....+.+...+..+..++...|++++|...++++.+..+.+ +...+..++.+|...|+.++|...|
T Consensus 88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 344568888988885555578889999999999999999999999999887654 4567888999999999999999988
Q ss_pred Hhc
Q 007329 558 NSN 560 (608)
Q Consensus 558 ~~~ 560 (608)
++.
T Consensus 168 ~~a 170 (176)
T 2r5s_A 168 RRQ 170 (176)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 104
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.80 E-value=8.9e-08 Score=84.64 Aligned_cols=182 Identities=13% Similarity=-0.062 Sum_probs=114.6
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhH
Q 007329 367 WTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEIT-IASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYS 445 (608)
Q Consensus 367 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 445 (608)
+-.....+...|++++|+..|++..+. .|+... +.. . ..... ..........+..+|.
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~-~----~~~~~--------------~~~~~~~~~~lg~~~~ 65 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYW-T----NVDKN--------------SEISSKLATELALAYK 65 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHH-H----HSCTT--------------SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHH-h----hhcch--------------hhhhHHHHHHHHHHHH
Confidence 344455788999999999999999875 344322 222 0 00000 0111223345667777
Q ss_pred hcCCHHHHHHHHccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCc--HHHHHH
Q 007329 446 KCKCIDKALEVFHQIPD---KNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGA--LMCGKE 520 (608)
Q Consensus 446 ~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~--~~~a~~ 520 (608)
+.|++++|...|++..+ .+...|..+...+...|++++|+..|++.+.-.+.+...+..+..++...|. .+.+..
T Consensus 66 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~ 145 (208)
T 3urz_A 66 KNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLET 145 (208)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 78888888888877652 3456777788888888888888888888885455567778888777765553 334444
Q ss_pred HHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc---CCCHHHHHHHH
Q 007329 521 IHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN---ERDVSAWNILL 571 (608)
Q Consensus 521 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~l~ 571 (608)
.++... .+.|....+..+..++...|++++|...|+++ .|+......+.
T Consensus 146 ~~~~~~--~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~ 197 (208)
T 3urz_A 146 DYKKLS--SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLD 197 (208)
T ss_dssp HHC-----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHH
T ss_pred HHHHHh--CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 444443 12222223344566677788999999999887 67765444443
No 105
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.79 E-value=1.7e-05 Score=79.78 Aligned_cols=368 Identities=9% Similarity=0.004 Sum_probs=177.9
Q ss_pred CC-ChHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhhcCC-hhhHH
Q 007329 73 NG-SLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFGD-LGHAW 150 (608)
Q Consensus 73 ~~-~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~ 150 (608)
.| +++.|..+|+.+... .|. |+++.+..+|+..+..- |++.+|...+....+.++ .+...
T Consensus 7 ~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~~--ps~~LW~~Y~~f~~~~~~~~~~i~ 68 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKKS--YNLDLWMLYIEYVRKVSQKKFKLY 68 (493)
T ss_dssp -----CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTTC--CCHHHHHHHHHHHHHHC----CTH
T ss_pred cCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHhCchHHHHH
Confidence 45 366666666666541 122 78888888888877743 577788777777666653 34455
Q ss_pred HHHcccC------CCCcchHHHHHHHHH----hcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhc---CCCChhhHH
Q 007329 151 YVFGKMC------DRDLFSWNVLIGGYA----KAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCG---GVPDLKRGK 217 (608)
Q Consensus 151 ~~~~~~~------~~~~~~~~~li~~~~----~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~---~~~~~~~a~ 217 (608)
.+|+... ..+...|...+..+. .+|+.+.+.++|++.... ++. .+..+-..|. ...+...+.
T Consensus 69 ~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~---P~~--~~~~lw~~Y~~fE~~~~~~~~~ 143 (493)
T 2uy1_A 69 EVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT---PMG--SLSELWKDFENFELELNKITGK 143 (493)
T ss_dssp HHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS---CCT--THHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC---hhh--hHHHHHHHHHHHHHHhccccHH
Confidence 5665542 124455666665443 245677788888887752 221 1112211111 111111222
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHh-cCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcC--C-----hhHHHHHHHHH
Q 007329 218 EVHVHVIRFGYEADVDVVNALITMYVK-CGDLVRARLVFDGMPKRDRISWNAMISGYFENG--E-----YMKGLMLFIMM 289 (608)
Q Consensus 218 ~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~--~-----~~~a~~~~~~m 289 (608)
+++.+... .|.. ...++++...+.. .+...|...+.--...+ - .+.+..+|++.
T Consensus 144 ~~~~~~~~---------------~y~~ar~~y~~~~~~~~~---~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~a 205 (493)
T 2uy1_A 144 KIVGDTLP---------------IFQSSFQRYQQIQPLIRG---WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYI 205 (493)
T ss_dssp HHHHHHHH---------------HHHHHHHHHHHHHHHHHT---CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhH---------------HHHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHH
Confidence 22211110 0000 0001222222222 13345555544422211 0 23466788887
Q ss_pred HHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHH-HHHHhhCC--------
Q 007329 290 REVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEG-EKVFSRME-------- 360 (608)
Q Consensus 290 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~-------- 360 (608)
.... +.+...|...+..+...|+.+.|..+++..+.. +.+...+. .|....+.++. ..+.+...
T Consensus 206 l~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~~~~l~~~~~~~~~~~~~ 278 (493)
T 2uy1_A 206 LDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAVYGDLKRKYSMGEAESAE 278 (493)
T ss_dssp HHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHHHHHHHHHTC--------
T ss_pred HHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHHHHHHHHHHHhhccchhh
Confidence 7643 334666666677777888899999999988887 33332222 22222111111 11111110
Q ss_pred --C--CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-cCChHHHHHHHHHHHHhCCCCchh
Q 007329 361 --S--KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACAC-LGNLDLGIKLHQLAMRTGLISYII 435 (608)
Q Consensus 361 --~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~ 435 (608)
. .....|...+....+.++.+.|..+|++. ... ..+...|......-.. .++.+.|..+|+...+.. +.+..
T Consensus 279 ~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~ 355 (493)
T 2uy1_A 279 KVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTL 355 (493)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHH
T ss_pred hhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHH
Confidence 0 01133444555555566677777777776 211 1233333221111111 235777777777666543 22334
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhH
Q 007329 436 IANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMM 492 (608)
Q Consensus 436 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 492 (608)
.+...++...+.|+.+.|..+|+++.+ ....|...+.--...|+.+.+..+++++.
T Consensus 356 ~~~~yid~e~~~~~~~~aR~l~er~~k-~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 356 LKEEFFLFLLRIGDEENARALFKRLEK-TSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHSCC-BHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455556666666777777777776632 23344444444444455555544444443
No 106
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.78 E-value=6.6e-08 Score=90.33 Aligned_cols=160 Identities=12% Similarity=-0.043 Sum_probs=132.4
Q ss_pred CCchhHHHHHHHHhHhcCCHHHHHHHHccCC--CC-CcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHH-HHH
Q 007329 431 ISYIIIANTLIDMYSKCKCIDKALEVFHQIP--DK-NVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLV-SIL 506 (608)
Q Consensus 431 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~-~ll 506 (608)
+.+...+..+...+.+.|++++|...|++.. .| +...+..+...+.+.|++++|...++++. ...|+..... ...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~-~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIP-LQDQDTRYQGLVAQ 192 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSC-GGGCSHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCc-hhhcchHHHHHHHH
Confidence 4556667778888999999999999999876 33 55788889999999999999999999987 3345544333 333
Q ss_pred HHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc---CCC---HHHHHHHHHHHHhcCCH
Q 007329 507 SACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN---ERD---VSAWNILLTGYAERGQG 580 (608)
Q Consensus 507 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~---~~~~~~l~~~~~~~g~~ 580 (608)
..+...++.++|...++++.+..+. +...+..+...|...|++++|.+.++++ .|+ ...+..++..+...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 3466778888899999999988766 7788889999999999999999999998 554 67899999999999999
Q ss_pred HHHHHHHHHHHH
Q 007329 581 ALAEEFFRKMID 592 (608)
Q Consensus 581 ~~A~~~~~~m~~ 592 (608)
++|...+++.+.
T Consensus 272 ~~a~~~~r~al~ 283 (287)
T 3qou_A 272 DALASXYRRQLY 283 (287)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 999999988764
No 107
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.78 E-value=5.1e-06 Score=77.14 Aligned_cols=218 Identities=11% Similarity=-0.055 Sum_probs=165.1
Q ss_pred CCCchHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccC--ChHHHHHHHHHHHHhCCCCchhHHHHHHHHh----Hhc--
Q 007329 377 SVLPDKAVETYQMMEAEGSMPDE-ITIASVLSACACLG--NLDLGIKLHQLAMRTGLISYIIIANTLIDMY----SKC-- 447 (608)
Q Consensus 377 ~~~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~-- 447 (608)
....++|+.+++++... .|+. ..++.--..+...| +++++++.++.+...+ +-+..+|+.-...+ .+.
T Consensus 46 ~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 46 EEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccc
Confidence 33446888888888875 3444 44555566666777 8888999888888776 33444444433333 344
Q ss_pred -CCHHHHHHHHccCCC---CCcccHHHHHHHHHhCCCch--HHHHHHHHhHhCCCCCHHHHHHHHHHHhccCc------H
Q 007329 448 -KCIDKALEVFHQIPD---KNVISWTSIILGLRLNNRSF--EALIFFRKMMLNLKPNSVTLVSILSACARIGA------L 515 (608)
Q Consensus 448 -g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~------~ 515 (608)
+++++++++++++.+ .|...|+.-...+.+.|+++ +++++++++++..+-|...|+.-...+...+. +
T Consensus 123 ~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhH
Confidence 788899999888873 46677888788888888888 99999999996666688888877777777776 8
Q ss_pred HHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHH-HHHHHHhc-------CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007329 516 MCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKP-AWNQFNSN-------ERDVSAWNILLTGYAERGQGALAEEFF 587 (608)
Q Consensus 516 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~ 587 (608)
+++++.++.++...+. |...|+.+...+.+.|+..+ +.++.+++ ..+...+..++..|.+.|+.++|.+++
T Consensus 203 ~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 203 DEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 9999999999998887 88899999999999888444 55677765 236788999999999999999999999
Q ss_pred HHHHHcCCCCCc
Q 007329 588 RKMIDSKGNWRK 599 (608)
Q Consensus 588 ~~m~~~g~~p~~ 599 (608)
+.+.+. +.|-.
T Consensus 282 ~~l~~~-~Dpir 292 (306)
T 3dra_A 282 DLLKSK-YNPIR 292 (306)
T ss_dssp HHHHHT-TCGGG
T ss_pred HHHHhc-cChHH
Confidence 999863 45543
No 108
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.77 E-value=7.9e-08 Score=101.46 Aligned_cols=167 Identities=7% Similarity=-0.113 Sum_probs=134.3
Q ss_pred HhcCChHHHHHHHhhCC--------C---CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 007329 344 LSFGNREEGEKVFSRME--------S---KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACL 412 (608)
Q Consensus 344 ~~~~~~~~a~~~~~~~~--------~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 412 (608)
...|++++|++.+++.. + .+...|..+...|.+.|++++|+..|++..+.. .-+...+..+...+...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 67899999999998876 2 456678888889999999999999999988764 22567888888899999
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC---CCcccHHHHHHHHHhCCCchHHHHHHH
Q 007329 413 GNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPD---KNVISWTSIILGLRLNNRSFEALIFFR 489 (608)
Q Consensus 413 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~ 489 (608)
|++++|...|+.+.+.. +.+...+..+..+|.+.|++++ .+.|++..+ .+...|..+..++.+.|++++|++.|+
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999998876 5567788889999999999999 888887663 355788889999999999999999999
Q ss_pred HhHhCCCCC-HHHHHHHHHHHhccCc
Q 007329 490 KMMLNLKPN-SVTLVSILSACARIGA 514 (608)
Q Consensus 490 ~m~~~~~p~-~~~~~~ll~~~~~~~~ 514 (608)
+.. ...|+ ...+..+..++...++
T Consensus 559 ~al-~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 559 EVP-PTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp TSC-TTSTTHHHHHHHHHHHTC----
T ss_pred hhc-ccCcccHHHHHHHHHHHHccCC
Confidence 987 44554 5677777778766555
No 109
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.75 E-value=9.3e-09 Score=85.53 Aligned_cols=126 Identities=6% Similarity=-0.136 Sum_probs=104.0
Q ss_pred HHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHH
Q 007329 472 ILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMK 551 (608)
Q Consensus 472 ~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 551 (608)
...+...|++++|+..++......+.+...+..+...|.+.|++++|.+.++++++..+. +...|..++.+|.+.|+++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchH
Confidence 344556788999999999887322234556778899999999999999999999998776 7889999999999999999
Q ss_pred HHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHcCCCCCch
Q 007329 552 PAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEEF-FRKMIDSKGNWRKL 600 (608)
Q Consensus 552 ~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~g~~p~~~ 600 (608)
+|...|+++ +.+...|..+...|...|++++|.+. +++.++. .|++.
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~ 134 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSP 134 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCH
Confidence 999999998 44688999999999999999876655 6888875 78775
No 110
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.75 E-value=2.5e-07 Score=82.15 Aligned_cols=124 Identities=15% Similarity=-0.072 Sum_probs=101.3
Q ss_pred HHHHHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHH
Q 007329 437 ANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALM 516 (608)
Q Consensus 437 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~ 516 (608)
+..+...+...|++++|.+.|++..+++...|..+...+...|++++|++.|++.....+.+...+..+..++...|+++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHH
Confidence 34456677788999999999998888888888888899999999999999999888445567788888889999999999
Q ss_pred HHHHHHHHHHHhCCCCC---------------ccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 517 CGKEIHAHALRIGVAFD---------------GFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 517 ~a~~~~~~~~~~~~~p~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
+|.+.++++.+..+... ...+..+..+|.+.|++++|.+.|+++
T Consensus 89 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 89 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999998887654311 156777888888889999998888887
No 111
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.72 E-value=1.7e-07 Score=77.44 Aligned_cols=92 Identities=11% Similarity=-0.026 Sum_probs=52.9
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHh
Q 007329 501 TLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAE 576 (608)
Q Consensus 501 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~ 576 (608)
.+..+...+.+.|++++|...|+++.+..+. ++..|..+..+|.+.|++++|.+.|+++ +.++..|..+..+|..
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLR 116 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 4445555555556666666666655555443 4555555566666666666666666555 3345556666666666
Q ss_pred cCCHHHHHHHHHHHHHc
Q 007329 577 RGQGALAEEFFRKMIDS 593 (608)
Q Consensus 577 ~g~~~~A~~~~~~m~~~ 593 (608)
.|++++|.+.|++.++.
T Consensus 117 lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 117 LKAPLKAKECFELVIQH 133 (151)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666666666666554
No 112
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.69 E-value=4.2e-07 Score=80.63 Aligned_cols=127 Identities=11% Similarity=-0.027 Sum_probs=110.7
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHh
Q 007329 467 SWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVR 546 (608)
Q Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 546 (608)
.+..+...+...|++++|++.|++.. .|+...+..+..++...|++++|...++++.+..+. +...+..++.+|..
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHH
Confidence 34566778889999999999999874 668899999999999999999999999999988654 67788899999999
Q ss_pred cCCHHHHHHHHHhc----CCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc
Q 007329 547 CGRMKPAWNQFNSN----ERDV----------------SAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRK 599 (608)
Q Consensus 547 ~g~~~~A~~~~~~~----~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 599 (608)
.|++++|.+.++++ +.+. ..|..+...|...|++++|.+.|++..+. .|+.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~ 154 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM--KSEP 154 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCSG
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc--Cccc
Confidence 99999999999988 3233 78999999999999999999999999875 5544
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.69 E-value=3.1e-07 Score=86.76 Aligned_cols=183 Identities=8% Similarity=-0.096 Sum_probs=94.7
Q ss_pred CCCchHHHHHHHHHHHC------CCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHHhCC---CC--chhHHHHHH
Q 007329 377 SVLPDKAVETYQMMEAE------GSMPDE----ITIASVLSACACLGNLDLGIKLHQLAMRTGL---IS--YIIIANTLI 441 (608)
Q Consensus 377 ~~~~~~a~~~~~~m~~~------g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~li 441 (608)
.|++++|.+++++..+. ++.++. ..|......|...|++++|...+....+... .+ -...|+.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg 83 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG 83 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788999999877652 112332 2455555556666666666666665543211 00 123455555
Q ss_pred HHhHhcCCHHHHHHHHccCCC-------CC--cccHHHHHHHHHhCCCchHHHHHHHHhHh---CC-CC--CHHHHHHHH
Q 007329 442 DMYSKCKCIDKALEVFHQIPD-------KN--VISWTSIILGLRLNNRSFEALIFFRKMML---NL-KP--NSVTLVSIL 506 (608)
Q Consensus 442 ~~~~~~g~~~~A~~~~~~~~~-------~~--~~~~~~l~~~~~~~~~~~~A~~~~~~m~~---~~-~p--~~~~~~~ll 506 (608)
.+|.+.|++++|...|++..+ +. ..+++.+...|.. |++++|++.|++.+. .. .+ ...++..+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg 162 (307)
T 2ifu_A 84 MMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKAS 162 (307)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 566666666666655554321 10 1344455555555 666666666666551 11 00 123455555
Q ss_pred HHHhccCcHHHHHHHHHHHHHhCCCCC-----ccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 507 SACARIGALMCGKEIHAHALRIGVAFD-----GFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 507 ~~~~~~~~~~~a~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
..+...|++++|...++++.+.....+ ...+..++.++...|++++|...|++.
T Consensus 163 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 163 RLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666666666666666665554321111 113344445555556666666666554
No 114
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.67 E-value=7.9e-07 Score=79.63 Aligned_cols=180 Identities=8% Similarity=-0.136 Sum_probs=116.4
Q ss_pred hhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCC-CC-HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCch--hHHHH
Q 007329 364 VVSWTTMISCYEGSVLPDKAVETYQMMEAEGSM-PD-EITIASVLSACACLGNLDLGIKLHQLAMRTGLISYI--IIANT 439 (608)
Q Consensus 364 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ 439 (608)
...+..+...+.+.|++++|+..|+++.+.... |. ...+..+..++.+.|++++|...++.+.+....... ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 344556677889999999999999999986322 21 357778889999999999999999999986533221 23444
Q ss_pred HHHHhHh------------------cCCHHHHHHHHccCCCCCc---ccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCC
Q 007329 440 LIDMYSK------------------CKCIDKALEVFHQIPDKNV---ISWTSIILGLRLNNRSFEALIFFRKMMLNLKPN 498 (608)
Q Consensus 440 li~~~~~------------------~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~ 498 (608)
+..++.+ .|+.++|...|+++.+.++ ..+.+.. .+..+... .
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~--------------~l~~~~~~---~ 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATK--------------RLVFLKDR---L 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHH--------------HHHHHHHH---H
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHH--------------HHHHHHHH---H
Confidence 4444443 5789999999998875332 2222111 11111000 0
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCC--ccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 499 SVTLVSILSACARIGALMCGKEIHAHALRIGVAFD--GFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 499 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
......+...+.+.|++++|...++++++..+... ...+..++.+|.+.|++++|.+.++.+
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l 210 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKII 210 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 01123445566777778888877777776544321 245666777778888888888777766
No 115
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.67 E-value=2.3e-07 Score=81.52 Aligned_cols=91 Identities=9% Similarity=0.001 Sum_probs=41.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHh---CC-CC--CccHHHHHHHHhHhcCCHHHHHHHHHhc------CCCH----
Q 007329 501 TLVSILSACARIGALMCGKEIHAHALRI---GV-AF--DGFLPNALLDMYVRCGRMKPAWNQFNSN------ERDV---- 564 (608)
Q Consensus 501 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~-~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~------~~~~---- 564 (608)
++..+...+...|++++|.+.+++..+. .. .+ ....+..+...+...|++++|.+.+++. ..+.
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 147 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA 147 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence 3444444455555555555555444432 00 10 1223444445555555555555555443 1111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007329 565 SAWNILLTGYAERGQGALAEEFFRKMI 591 (608)
Q Consensus 565 ~~~~~l~~~~~~~g~~~~A~~~~~~m~ 591 (608)
.++..+...+...|++++|.+.+++..
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 123445555555555555555555544
No 116
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.67 E-value=3.8e-07 Score=72.93 Aligned_cols=98 Identities=5% Similarity=-0.029 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHH
Q 007329 500 VTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYA 575 (608)
Q Consensus 500 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~ 575 (608)
..+......+.+.|++++|.+.|+++++..+. +...|..+..+|.+.|++++|++.++++ +.+...|..+..+|.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 45666777777888888888888888777655 6677777888888888888888888777 446778888888888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 576 ERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 576 ~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
..|++++|.+.|++.++. .|++.
T Consensus 93 ~~~~~~~A~~~~~~al~l--~P~~~ 115 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQV--DPSNE 115 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HCCCHHHHHHHHHHHHHH--CcCCH
Confidence 888888888888888874 77765
No 117
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.66 E-value=3.1e-07 Score=75.82 Aligned_cols=101 Identities=16% Similarity=0.012 Sum_probs=87.7
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHH
Q 007329 464 NVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDM 543 (608)
Q Consensus 464 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 543 (608)
+...|..+...+.+.|++++|+..|++.....+.+...|..+..++...|++++|...++++.+..+. ++..|..+..+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~ 113 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHH
Confidence 34567778888999999999999999998555667888999999999999999999999999998776 77888899999
Q ss_pred hHhcCCHHHHHHHHHhc---CCCHH
Q 007329 544 YVRCGRMKPAWNQFNSN---ERDVS 565 (608)
Q Consensus 544 ~~~~g~~~~A~~~~~~~---~~~~~ 565 (608)
|.+.|++++|.+.|+++ .||..
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999988 66654
No 118
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.65 E-value=5.7e-07 Score=75.96 Aligned_cols=126 Identities=9% Similarity=-0.101 Sum_probs=100.4
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhH
Q 007329 466 ISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYV 545 (608)
Q Consensus 466 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 545 (608)
..|..+...+...|++++|...|++.....+.+...+..+...+...|++++|...++++.+..+. +...+..++.+|.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~ 92 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 346667778888888999999888888445557888888888999999999999999998887654 5677888889999
Q ss_pred hcCCHHHHHHHHHhc----CCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHH
Q 007329 546 RCGRMKPAWNQFNSN----ERDVSAWNILLTG--YAERGQGALAEEFFRKMID 592 (608)
Q Consensus 546 ~~g~~~~A~~~~~~~----~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~~ 592 (608)
..|++++|.+.++++ +.+...+..+..+ +...|++++|.+.+++..+
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999887 4456666444444 7788999999999887754
No 119
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.64 E-value=2.7e-07 Score=87.15 Aligned_cols=152 Identities=9% Similarity=0.001 Sum_probs=85.4
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCC---CC--chhHHHHHHHHhHhcCCHHHHHHHHccCCC-----CC----cc
Q 007329 401 TIASVLSACACLGNLDLGIKLHQLAMRTGL---IS--YIIIANTLIDMYSKCKCIDKALEVFHQIPD-----KN----VI 466 (608)
Q Consensus 401 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~ 466 (608)
+|..+...|...|++++|...++...+... .+ ...++..+..+|.+ |++++|++.|++..+ .+ ..
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 344444555555555555555554443210 11 12344455555555 666666666655431 11 24
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHhHh---CCC--CC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCC-c---cH
Q 007329 467 SWTSIILGLRLNNRSFEALIFFRKMML---NLK--PN-SVTLVSILSACARIGALMCGKEIHAHALRIGVAFD-G---FL 536 (608)
Q Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~m~~---~~~--p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~---~~ 536 (608)
+++.+...|.+.|++++|++.|++... ... ++ ...+..+..++...|++++|...+++.. ..+... . ..
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~ 235 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAA 235 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHH
Confidence 566777788888888888888888771 111 11 2255666667777789999999988887 433211 1 12
Q ss_pred HHHHHHHhHhcCCHHHHHH
Q 007329 537 PNALLDMYVRCGRMKPAWN 555 (608)
Q Consensus 537 ~~~l~~~~~~~g~~~~A~~ 555 (608)
...++.+| ..|+.+.+.+
T Consensus 236 l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 236 LEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHH-HhcCHHHHHH
Confidence 33445544 5677666655
No 120
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.63 E-value=3.3e-07 Score=95.00 Aligned_cols=152 Identities=13% Similarity=-0.031 Sum_probs=83.3
Q ss_pred CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHH
Q 007329 378 VLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVF 457 (608)
Q Consensus 378 ~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 457 (608)
|++++|+..+++..+.. .-+...+..+...+...|++++|.+.++...+.. +.+...+..+..+|.+.|++++|.+.+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 56666666666665542 1235556666666666667777776666666544 334556666666666667777776666
Q ss_pred ccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHHhCCC
Q 007329 458 HQIPD---KNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARI---GALMCGKEIHAHALRIGVA 531 (608)
Q Consensus 458 ~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~ 531 (608)
++..+ .+...|..+..++.+.|++++|.+.|++..+..+.+...+..+..++... |++++|.+.++++.+.++.
T Consensus 81 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 160 (568)
T 2vsy_A 81 QQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVG 160 (568)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCC
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCc
Confidence 65542 23455666666666667777777766666633344555666666666666 6666666666666665544
No 121
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.61 E-value=3.4e-06 Score=78.94 Aligned_cols=153 Identities=12% Similarity=-0.064 Sum_probs=111.4
Q ss_pred HHHHhHhcCCHHHHHHHHccCCCCC---c------ccHHHHHHHHHhCCCchHHHHHHHHhHh--CCCCC----HHHHHH
Q 007329 440 LIDMYSKCKCIDKALEVFHQIPDKN---V------ISWTSIILGLRLNNRSFEALIFFRKMML--NLKPN----SVTLVS 504 (608)
Q Consensus 440 li~~~~~~g~~~~A~~~~~~~~~~~---~------~~~~~l~~~~~~~~~~~~A~~~~~~m~~--~~~p~----~~~~~~ 504 (608)
.+..+...|++++|.+.+++..+.. . ..+..+...+...+++++|+..|++... ...++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3566777888888888887755321 1 1223455666677788999999998882 12223 236888
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHh-----CCCC-CccHHHHHHHHhHhcCCHHHHHHHHHhc------C---CC-HHHHH
Q 007329 505 ILSACARIGALMCGKEIHAHALRI-----GVAF-DGFLPNALLDMYVRCGRMKPAWNQFNSN------E---RD-VSAWN 568 (608)
Q Consensus 505 ll~~~~~~~~~~~a~~~~~~~~~~-----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~------~---~~-~~~~~ 568 (608)
+..+|...|++++|...++++.+. +..+ ...++..++.+|.+.|++++|.+.++++ . +. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888999999999999999888742 1111 1236778889999999999999999877 1 11 67889
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHH
Q 007329 569 ILLTGYAERGQ-GALAEEFFRKMID 592 (608)
Q Consensus 569 ~l~~~~~~~g~-~~~A~~~~~~m~~ 592 (608)
.+..+|...|+ +++|.+.+++..+
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 6999999988864
No 122
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.61 E-value=6.1e-07 Score=71.72 Aligned_cols=105 Identities=6% Similarity=-0.103 Sum_probs=82.1
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHh
Q 007329 467 SWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVR 546 (608)
Q Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 546 (608)
.+......|.+.|++++|++.|++.+...+.+...|..+..++.+.|++++|+..++++++.++. +...|..++.+|..
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHH
Confidence 45566778888888888888888888555667788888888888888888888888888887665 56778888888888
Q ss_pred cCCHHHHHHHHHhc---CC-CHHHHHHHHH
Q 007329 547 CGRMKPAWNQFNSN---ER-DVSAWNILLT 572 (608)
Q Consensus 547 ~g~~~~A~~~~~~~---~~-~~~~~~~l~~ 572 (608)
.|++++|.+.|+++ .| +...+..|..
T Consensus 94 ~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 94 MREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 99999999888887 44 5555555543
No 123
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.61 E-value=1e-06 Score=82.61 Aligned_cols=121 Identities=11% Similarity=0.003 Sum_probs=66.7
Q ss_pred HHHHHHhCCCchHHHHHHHHhHhC----CCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHHh-CCCCC-----ccHHH
Q 007329 471 IILGLRLNNRSFEALIFFRKMMLN----LKPN--SVTLVSILSACARIGALMCGKEIHAHALRI-GVAFD-----GFLPN 538 (608)
Q Consensus 471 l~~~~~~~~~~~~A~~~~~~m~~~----~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~p~-----~~~~~ 538 (608)
+...+...|++++|++.+++...- ..+. ..+++.+...|...|++++|...++++.+. ...|+ ..++.
T Consensus 121 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~ 200 (293)
T 2qfc_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHH
Confidence 334455556666666666665511 1111 335566666666666666666666665521 01111 13555
Q ss_pred HHHHHhHhcCCHHHHHHHHHhc---CCC-------HHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 007329 539 ALLDMYVRCGRMKPAWNQFNSN---ERD-------VSAWNILLTGYAERGQGALA-EEFFRKMI 591 (608)
Q Consensus 539 ~l~~~~~~~g~~~~A~~~~~~~---~~~-------~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 591 (608)
.++.+|.+.|++++|.+.++++ .++ ..+|..+...|...|++++| ...+++..
T Consensus 201 nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 6666666666666666666655 111 45566666666666776666 55555543
No 124
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.61 E-value=4.3e-06 Score=73.88 Aligned_cols=72 Identities=14% Similarity=0.053 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcC----CHHHHHHHH
Q 007329 382 KAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCK----CIDKALEVF 457 (608)
Q Consensus 382 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~ 457 (608)
+|+..|++..+.| +...+..+...|...+++++|...|+...+.| +...+..|...|.. + +.++|.+.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4556666666654 55566666666666677777777776666554 33444445555554 3 455555544
Q ss_pred ccC
Q 007329 458 HQI 460 (608)
Q Consensus 458 ~~~ 460 (608)
++.
T Consensus 77 ~~A 79 (212)
T 3rjv_A 77 EKA 79 (212)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 125
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.60 E-value=1.2e-06 Score=77.48 Aligned_cols=161 Identities=12% Similarity=-0.045 Sum_probs=106.1
Q ss_pred CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC----ChHHHHHHHHHHHHhCCCCchhHH
Q 007329 362 KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLG----NLDLGIKLHQLAMRTGLISYIIIA 437 (608)
Q Consensus 362 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~ 437 (608)
.+...+..+...|...+++++|+..|++..+.| +...+..+...|.. + +.++|.++|+...+.| +...+
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~ 88 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGE 88 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 345556666666666777777777777777665 55566666666666 5 7788888888776654 34555
Q ss_pred HHHHHHhHh----cCCHHHHHHHHccCCCCC-----cccHHHHHHHHHh----CCCchHHHHHHHHhHhCCCCCHHHHHH
Q 007329 438 NTLIDMYSK----CKCIDKALEVFHQIPDKN-----VISWTSIILGLRL----NNRSFEALIFFRKMMLNLKPNSVTLVS 504 (608)
Q Consensus 438 ~~li~~~~~----~g~~~~A~~~~~~~~~~~-----~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~~~p~~~~~~~ 504 (608)
..|...|.. .+++++|.+.|++..+.+ +..+..|...|.. .+++++|+..|++.... +.+...+..
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~ 167 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYW 167 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHH
Confidence 666666665 677777777777766433 4566667777766 66777788888777632 334445566
Q ss_pred HHHHHhcc-C-----cHHHHHHHHHHHHHhCC
Q 007329 505 ILSACARI-G-----ALMCGKEIHAHALRIGV 530 (608)
Q Consensus 505 ll~~~~~~-~-----~~~~a~~~~~~~~~~~~ 530 (608)
|...|... | ++++|...+++..+.|.
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 66665432 2 77778888777777664
No 126
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.58 E-value=3.6e-05 Score=71.44 Aligned_cols=219 Identities=8% Similarity=-0.011 Sum_probs=163.9
Q ss_pred HHHHHhCC-ChHHHHHHHHHHhhcCCCCC-hhhHHHHHHHhhccC--CchhhhHHHHHHHHhcCCcchhHHhHHHHHh--
Q 007329 67 LNELCLNG-SLEQALKYLDSMQELNICVD-EDALVNLVRLCEWKR--GYDEGLYLHSVVSKTMSHLSVRLGNAFLSMF-- 140 (608)
Q Consensus 67 l~~~~~~~-~~~~A~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-- 140 (608)
+.+..+.| ..++|+.+++.++... |+ ..+|+.--.++...+ ++++++..++.++...+. +..+|+.-...+
T Consensus 39 ~~a~~~~~e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~ 115 (306)
T 3dra_A 39 LLALMKAEEYSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQ 115 (306)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHH
Confidence 44444444 4578999999998854 54 445666666777777 999999999999988765 455566555555
Q ss_pred --hhc---CChhhHHHHHcccCC---CCcchHHHHHHHHHhcCChh--HHHHHHHHHHhcCCCCCCcchHHHHHHHhcCC
Q 007329 141 --VKF---GDLGHAWYVFGKMCD---RDLFSWNVLIGGYAKAGFFD--EALSLYQRMFWVGGVKPDVYTFPCVLRTCGGV 210 (608)
Q Consensus 141 --~~~---g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~ 210 (608)
... +++++++..++++.+ .|..+|+--.-.+.+.|.++ ++++.++++.+.. +-|...|+.-...+...
T Consensus 116 ~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~l 193 (306)
T 3dra_A 116 IMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFSK 193 (306)
T ss_dssp HHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHSS
T ss_pred HHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhc
Confidence 444 788999999998844 46667777777777888888 9999999999876 56777777766666666
Q ss_pred CC------hhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH-HHHHHccCCC------CCHhHHHHHHHHHHhcC
Q 007329 211 PD------LKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVR-ARLVFDGMPK------RDRISWNAMISGYFENG 277 (608)
Q Consensus 211 ~~------~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~------~~~~~~~~li~~~~~~~ 277 (608)
+. ++++.+.++.++... +-|...|+-+-..+.+.|+... +..+.+++.+ +++..+..++..|.+.|
T Consensus 194 ~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~ 272 (306)
T 3dra_A 194 KHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQK 272 (306)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTT
T ss_pred cccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccC
Confidence 66 788888888888875 6678888888888888887444 4556665543 36677888888888888
Q ss_pred ChhHHHHHHHHHHH
Q 007329 278 EYMKGLMLFIMMRE 291 (608)
Q Consensus 278 ~~~~a~~~~~~m~~ 291 (608)
+.++|.++++.+.+
T Consensus 273 ~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 273 KYNESRTVYDLLKS 286 (306)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 88888888888765
No 127
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.55 E-value=6.8e-07 Score=76.60 Aligned_cols=117 Identities=14% Similarity=0.077 Sum_probs=85.1
Q ss_pred HhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHH-hHhcCCH--HH
Q 007329 476 RLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDM-YVRCGRM--KP 552 (608)
Q Consensus 476 ~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~--~~ 552 (608)
...|++++|+..+++.....+.+...+..+...+...|++++|...++++.+..+. +...+..+..+ |...|++ ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHH
Confidence 34677777888888777444556777788888888888888888888888776554 55666677777 6777887 88
Q ss_pred HHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 553 AWNQFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 553 A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
|...++++ +.+...|..+...|...|++++|...++++.+.
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 88888777 445677788888888888888888888888775
No 128
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.54 E-value=2.4e-07 Score=76.64 Aligned_cols=92 Identities=9% Similarity=0.039 Sum_probs=42.4
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhc
Q 007329 468 WTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRC 547 (608)
Q Consensus 468 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 547 (608)
+..+...+.+.|++++|+..|++.....+.+...+..+..++...|++++|...++++.+..+. ++..+..+..+|...
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~ 102 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAECLLQX 102 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHc
Confidence 3334444444555555555555444223334444444444444445555555555444444332 334444444444444
Q ss_pred CCHHHHHHHHHhc
Q 007329 548 GRMKPAWNQFNSN 560 (608)
Q Consensus 548 g~~~~A~~~~~~~ 560 (608)
|++++|.+.|+++
T Consensus 103 g~~~~A~~~~~~a 115 (148)
T 2vgx_A 103 GELAEAESGLFLA 115 (148)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 4444444444443
No 129
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.54 E-value=1.3e-06 Score=70.54 Aligned_cols=113 Identities=3% Similarity=-0.146 Sum_probs=82.6
Q ss_pred cccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHh
Q 007329 465 VISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMY 544 (608)
Q Consensus 465 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 544 (608)
...|..+...+...|++++|++.|++.....+.+...+..+...+...|++++|.+.++++.+..+. +...+..+..+|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~ 94 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHHHH
Confidence 3456677777888888888888888887444456777778888888888888888888888776544 566777777888
Q ss_pred HhcCCHHHHHHHHHhc---CC-CHHHHHHHHHHHHhcC
Q 007329 545 VRCGRMKPAWNQFNSN---ER-DVSAWNILLTGYAERG 578 (608)
Q Consensus 545 ~~~g~~~~A~~~~~~~---~~-~~~~~~~l~~~~~~~g 578 (608)
.+.|++++|.+.++++ .| +...+..+...+...|
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 8888888888888776 33 4556666666666554
No 130
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.54 E-value=1.8e-06 Score=68.51 Aligned_cols=93 Identities=15% Similarity=0.120 Sum_probs=46.0
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHh
Q 007329 467 SWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVR 546 (608)
Q Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 546 (608)
.|..+...+...|++++|.+.++++....+.+..++..+...+...|++++|..+++++.+..+. +...+..+...|..
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~ 89 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHH
Confidence 34444445555555555555555554222334444555555555555555555555555544322 33444445555555
Q ss_pred cCCHHHHHHHHHhc
Q 007329 547 CGRMKPAWNQFNSN 560 (608)
Q Consensus 547 ~g~~~~A~~~~~~~ 560 (608)
.|++++|.+.++++
T Consensus 90 ~~~~~~A~~~~~~~ 103 (125)
T 1na0_A 90 QGDYDEAIEYYQKA 103 (125)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHH
Confidence 55555555555544
No 131
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.52 E-value=1.5e-06 Score=69.67 Aligned_cols=114 Identities=11% Similarity=-0.053 Sum_probs=81.1
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhH
Q 007329 466 ISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYV 545 (608)
Q Consensus 466 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 545 (608)
..|..+...+...|++++|++.|++.....+.+...+..+...+...|++++|.+.++++.+..+. +...+..++.+|.
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHHHH
Confidence 345566667777777777777777777444456677777777777788888888888877776543 4566777777788
Q ss_pred hcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCH
Q 007329 546 RCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQG 580 (608)
Q Consensus 546 ~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~ 580 (608)
+.|++++|.+.++++ +.+...+..+...+...|++
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 888888888888776 34566777777777766654
No 132
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.48 E-value=1.7e-06 Score=82.73 Aligned_cols=125 Identities=10% Similarity=0.037 Sum_probs=91.8
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCC---------------HHHHHHHHHHHhccCcHHHHHHHHHHHHHhCC
Q 007329 466 ISWTSIILGLRLNNRSFEALIFFRKMMLNLKPN---------------SVTLVSILSACARIGALMCGKEIHAHALRIGV 530 (608)
Q Consensus 466 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~---------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 530 (608)
..|..+...+.+.|++++|+..|++.+.-.+.+ ...|..+..++.+.|++++|...++++++..+
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 227 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS 227 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 456666677777777777777777777222222 46777888888888888888888888887765
Q ss_pred CCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 007329 531 AFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQGALA-EEFFRKMI 591 (608)
Q Consensus 531 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 591 (608)
. +...+..+..+|...|++++|.+.|+++ +.+...+..+...+...|+.++| ..++++|.
T Consensus 228 ~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 228 N-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 6677777888888888888888888877 44677788888888888888777 45566664
No 133
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.46 E-value=2.9e-07 Score=80.63 Aligned_cols=152 Identities=8% Similarity=-0.007 Sum_probs=102.9
Q ss_pred HHhHhcCCHHHHHHHHccCCCC---CcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCH----------------HHH
Q 007329 442 DMYSKCKCIDKALEVFHQIPDK---NVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNS----------------VTL 502 (608)
Q Consensus 442 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~----------------~~~ 502 (608)
......|+++++.+.++.-.+. ....+..+...+...|++++|++.|++.....+.+. ..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp ----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 3344456667666666543321 234566777888899999999999999883332232 678
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcC
Q 007329 503 VSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERG 578 (608)
Q Consensus 503 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g 578 (608)
..+..++...|++++|...++++++..+. +...+..+..+|...|++++|.+.|+++ +.+...+..+...+...|
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 170 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK 170 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence 88889999999999999999999987654 6678888999999999999999999988 446788888888888888
Q ss_pred CHHHHH-HHHHHHHHcC
Q 007329 579 QGALAE-EFFRKMIDSK 594 (608)
Q Consensus 579 ~~~~A~-~~~~~m~~~g 594 (608)
+.+++. ..+..|...|
T Consensus 171 ~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 171 EARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHC-------------
T ss_pred HHHHHHHHHHHHHhccc
Confidence 887777 6666666554
No 134
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.45 E-value=7.1e-05 Score=70.24 Aligned_cols=215 Identities=11% Similarity=-0.038 Sum_probs=155.4
Q ss_pred HHcCCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhc-C-C
Q 007329 374 YEGSVLPDKAVETYQMMEAEGSMPD-EITIASVLSACACLG-NLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKC-K-C 449 (608)
Q Consensus 374 ~~~~~~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~ 449 (608)
....+..++|+++++++...+ |+ ...|+.--..+...| .+++++.+++.+.... +-+..+|+.-..++.+. + +
T Consensus 64 ~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSC
T ss_pred HHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCC
Confidence 344555678899998888764 44 344555555566667 5889999999888766 44556666555555555 6 7
Q ss_pred HHHHHHHHccCCCC---CcccHHHHHHHHHhCCCch--------HHHHHHHHhHhCCCCCHHHHHHHHHHHhccCc----
Q 007329 450 IDKALEVFHQIPDK---NVISWTSIILGLRLNNRSF--------EALIFFRKMMLNLKPNSVTLVSILSACARIGA---- 514 (608)
Q Consensus 450 ~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~--------~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~---- 514 (608)
.++++++++++.+. |...|+.-...+.+.|.++ ++++.++++++..+-|...|+.....+.+.+.
T Consensus 141 ~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp CHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccc
Confidence 88999999988854 4456666666666666666 89999999996566688888888888877775
Q ss_pred ---HHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCH--------------------HHHHHHHHhc---C-------
Q 007329 515 ---LMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRM--------------------KPAWNQFNSN---E------- 561 (608)
Q Consensus 515 ---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~---~------- 561 (608)
++++++.+++++...+. |...|+-+-..+.+.|+- .+..+...++ .
T Consensus 221 ~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPL 299 (349)
T ss_dssp HHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCS
T ss_pred hHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCC
Confidence 68899999999988777 788888777777776653 3344444444 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007329 562 RDVSAWNILLTGYAERGQGALAEEFFRKMID 592 (608)
Q Consensus 562 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 592 (608)
+....+.-|+..|...|+.++|.++++.+.+
T Consensus 300 ~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 300 PVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 4577888999999999999999999999875
No 135
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.42 E-value=2.1e-06 Score=68.69 Aligned_cols=92 Identities=10% Similarity=-0.139 Sum_probs=51.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHh
Q 007329 501 TLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAE 576 (608)
Q Consensus 501 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~ 576 (608)
.+..+...+.+.|++++|...++++++..+. +...|..+..+|.+.|++++|.+.++++ +.+...|..+..++..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 3444445555555555555555555554433 4455555555555666666666655555 3345555566666666
Q ss_pred cCCHHHHHHHHHHHHHc
Q 007329 577 RGQGALAEEFFRKMIDS 593 (608)
Q Consensus 577 ~g~~~~A~~~~~~m~~~ 593 (608)
.|++++|.+.|++..+.
T Consensus 85 ~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 85 VKEYASALETLDAARTK 101 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHh
Confidence 66666666666665553
No 136
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.42 E-value=4.7e-07 Score=82.05 Aligned_cols=121 Identities=7% Similarity=-0.128 Sum_probs=61.6
Q ss_pred HHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCC--ccHHHHHHHHhHhcC
Q 007329 471 IILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFD--GFLPNALLDMYVRCG 548 (608)
Q Consensus 471 l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g 548 (608)
+...+...|++++|.++|+.+.. ..|+......+...+.+.+++++|+..++...+.. .|. ...+..+..++.+.|
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~-~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG 185 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPV-AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLA 185 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCC-TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCC
Confidence 34445555555555555555542 22333244444445555566666666665332211 110 123444556666666
Q ss_pred CHHHHHHHHHhc--C---CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 549 RMKPAWNQFNSN--E---RD--VSAWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 549 ~~~~A~~~~~~~--~---~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
++++|+..|+++ . |. ...+.....++.+.|+.++|..+|+++.+.
T Consensus 186 ~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 186 LFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp CHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 666666666655 1 21 224455555666666666666666666654
No 137
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.42 E-value=2.2e-05 Score=73.41 Aligned_cols=160 Identities=11% Similarity=-0.039 Sum_probs=98.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCCcc----hHHHHHHHhcCCCChhhHHHHHHHHHHhCCCC-c----hhHHHH
Q 007329 167 LIGGYAKAGFFDEALSLYQRMFWVGGVKPDVY----TFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEA-D----VDVVNA 237 (608)
Q Consensus 167 li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~----~~~~~~ 237 (608)
.+..+...|++++|.+++++..+.....|+.. .+..+...+...|++++|.+.++...+..... + ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35566777888888888877765432223321 22335555666677778887777777643221 2 225777
Q ss_pred HHHHHHhcCCHHHHHHHHccCCC-------C---CHhHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC-hhHHH
Q 007329 238 LITMYVKCGDLVRARLVFDGMPK-------R---DRISWNAMISGYFENGEYMKGLMLFIMMREV----LVDPD-FMTLS 302 (608)
Q Consensus 238 li~~~~~~g~~~~A~~~~~~~~~-------~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~ 302 (608)
+...|...|++++|...|++..+ . ...+|..+...|.+.|++++|+..+++..+. +..+. ...|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 77777777777777777766541 1 2236667777777778888777777766432 22222 34566
Q ss_pred HHHHHHhhcCC-hhhHHHHHHHHHH
Q 007329 303 SVISASELVGD-EKLGREVHGYVIK 326 (608)
Q Consensus 303 ~ll~~~~~~~~-~~~a~~~~~~~~~ 326 (608)
.+..++...|+ +++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 66666666673 4777776666543
No 138
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.42 E-value=1.9e-05 Score=73.78 Aligned_cols=121 Identities=9% Similarity=-0.049 Sum_probs=84.8
Q ss_pred HHHHhHhcCCHHHHHHHHccCCC-----CC----cccHHHHHHHHHhCCCchHHHHHHHHhH---hCCCCC----HHHHH
Q 007329 440 LIDMYSKCKCIDKALEVFHQIPD-----KN----VISWTSIILGLRLNNRSFEALIFFRKMM---LNLKPN----SVTLV 503 (608)
Q Consensus 440 li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~---~~~~p~----~~~~~ 503 (608)
+...+...|++++|...+++..+ .+ ..+|+.+...|...|++++|+..|++.. ...+.+ ..++.
T Consensus 121 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~ 200 (293)
T 2qfc_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHH
Confidence 44445556666666666554321 11 2366777788888888888888888876 222222 25788
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHhCCCC-----CccHHHHHHHHhHhcCCHHHH-HHHHHhc
Q 007329 504 SILSACARIGALMCGKEIHAHALRIGVAF-----DGFLPNALLDMYVRCGRMKPA-WNQFNSN 560 (608)
Q Consensus 504 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A-~~~~~~~ 560 (608)
.+...|...|++++|...++++.+..... -..+|..++.+|.+.|++++| ...++++
T Consensus 201 nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 88999999999999999999887543111 145678889999999999999 7767765
No 139
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.42 E-value=6.9e-07 Score=83.04 Aligned_cols=189 Identities=10% Similarity=-0.042 Sum_probs=118.9
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC---CCcccHHHHHHH
Q 007329 398 DEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPD---KNVISWTSIILG 474 (608)
Q Consensus 398 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~ 474 (608)
+...+..+...+...|++++|...++.+.+.. +.+...+..+..+|.+.|++++|...+++..+ .+...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34556666777777888888888888777765 44667777788888888888888888887664 244677778888
Q ss_pred HHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHH
Q 007329 475 LRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAW 554 (608)
Q Consensus 475 ~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 554 (608)
+...|++++|+..|++.....+.+...+...+....+ ..++. -+..........+......+...+ .|++++|.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~ 155 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR---IAKKK-RWNSIEERRIHQESELHSYLTRLI--AAEREREL 155 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH---HHHHH-HHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH---HHHHH-HHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHH
Confidence 8888999999988888771111010011111111111 11111 122233334444566655554433 79999999
Q ss_pred HHHHhc---CCCH-HHHHHHHHHHHhc-CCHHHHHHHHHHHHHc
Q 007329 555 NQFNSN---ERDV-SAWNILLTGYAER-GQGALAEEFFRKMIDS 593 (608)
Q Consensus 555 ~~~~~~---~~~~-~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 593 (608)
+.++++ .|+. .....+...+... +.+++|.++|++..+.
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999887 5543 3444444445554 6788999999888653
No 140
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.40 E-value=3.8e-06 Score=67.18 Aligned_cols=89 Identities=11% Similarity=0.119 Sum_probs=41.2
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc---CC----C----HHHHHHHHH
Q 007329 504 SILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN---ER----D----VSAWNILLT 572 (608)
Q Consensus 504 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~----~----~~~~~~l~~ 572 (608)
.+...+.+.|++++|++.|+++++..+. +...|..+..+|.+.|++++|++.++++ .| + ..+|..+..
T Consensus 13 ~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~ 91 (127)
T 4gcn_A 13 DLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGN 91 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence 3444444444444444444444443332 3334444444444444444444444443 11 0 124445555
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 007329 573 GYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 573 ~~~~~g~~~~A~~~~~~m~~~ 593 (608)
++...|++++|++.|++.++.
T Consensus 92 ~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 92 AFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhh
Confidence 555566666666666665554
No 141
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.39 E-value=6.6e-06 Score=74.54 Aligned_cols=135 Identities=10% Similarity=-0.102 Sum_probs=97.2
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHccCCC--CCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCC--HHHHHHHHHHHhc
Q 007329 436 IANTLIDMYSKCKCIDKALEVFHQIPD--KNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPN--SVTLVSILSACAR 511 (608)
Q Consensus 436 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~--~~~~~~ll~~~~~ 511 (608)
....+...+...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+....-..|. ...+..+..++..
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHH
Confidence 344566778888999999999998874 332355566667888999999999998665211221 2367778888999
Q ss_pred cCcHHHHHHHHHHHHHhCCCCC--ccHHHHHHHHhHhcCCHHHHHHHHHhc---CCCHHHHHHH
Q 007329 512 IGALMCGKEIHAHALRIGVAFD--GFLPNALLDMYVRCGRMKPAWNQFNSN---ERDVSAWNIL 570 (608)
Q Consensus 512 ~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~l 570 (608)
.|++++|+..|++.......|. ......+..++.+.|+.++|...|+++ .|+...+..|
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~~~~~~aL 247 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPEPKVAAAL 247 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 9999999999998875332243 234556778888999999999999988 6664444444
No 142
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.39 E-value=2.9e-06 Score=71.52 Aligned_cols=121 Identities=13% Similarity=-0.015 Sum_probs=67.9
Q ss_pred HHHHHhHhcCCHHHHHHHHccCC---CCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcH
Q 007329 439 TLIDMYSKCKCIDKALEVFHQIP---DKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGAL 515 (608)
Q Consensus 439 ~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~ 515 (608)
.+...+...|++++|...|++.. ..+...|..+...+...|++++|++.+++.....+.+...+..+..++...|++
T Consensus 18 ~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~ 97 (166)
T 1a17_A 18 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 97 (166)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccH
Confidence 33444444455555555444433 123345555556666666666666666666633344566666666677777777
Q ss_pred HHHHHHHHHHHHhCCCCCccHHH--HHHHHhHhcCCHHHHHHHHHhc
Q 007329 516 MCGKEIHAHALRIGVAFDGFLPN--ALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 516 ~~a~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
++|...++++.+..+. +...+. .++..+.+.|++++|.+.+++.
T Consensus 98 ~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 98 RAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 7777777776665443 333332 2333356667777777666543
No 143
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.39 E-value=1.1e-06 Score=72.04 Aligned_cols=93 Identities=9% Similarity=0.051 Sum_probs=55.2
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHh
Q 007329 467 SWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVR 546 (608)
Q Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 546 (608)
.+..+...+.+.|++++|+..|++.....+.+...|..+..++...|++++|...++++.+..+. ++..+..+..+|..
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHH
Confidence 34445555666666666666666665333445555666666666666666666666666665543 44555556666666
Q ss_pred cCCHHHHHHHHHhc
Q 007329 547 CGRMKPAWNQFNSN 560 (608)
Q Consensus 547 ~g~~~~A~~~~~~~ 560 (608)
.|++++|.+.|+++
T Consensus 99 ~g~~~~A~~~~~~a 112 (142)
T 2xcb_A 99 LGDLDGAESGFYSA 112 (142)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 66666666666555
No 144
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.38 E-value=1.4e-06 Score=69.68 Aligned_cols=105 Identities=10% Similarity=-0.032 Sum_probs=87.5
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCC------ccHHHH
Q 007329 466 ISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFD------GFLPNA 539 (608)
Q Consensus 466 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~------~~~~~~ 539 (608)
..+..+...+.+.|++++|++.|++.++-.+.+...|..+..++...|++++|++.++++++..+... ..+|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45778889999999999999999999955566788999999999999999999999999987654322 236777
Q ss_pred HHHHhHhcCCHHHHHHHHHhc---CCCHHHHHHH
Q 007329 540 LLDMYVRCGRMKPAWNQFNSN---ERDVSAWNIL 570 (608)
Q Consensus 540 l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~l 570 (608)
++.+|...|++++|++.|++. .||+.....|
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~~l 122 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKKV 122 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcCHHHHHHH
Confidence 888999999999999999987 6777655443
No 145
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.36 E-value=0.00021 Score=67.12 Aligned_cols=218 Identities=12% Similarity=0.039 Sum_probs=155.0
Q ss_pred HHHhCCChHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccC-CchhhhHHHHHHHHhcCCcchhHHhHHHHHhhhc-C-C
Q 007329 69 ELCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKR-GYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKF-G-D 145 (608)
Q Consensus 69 ~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~ 145 (608)
.+.+.+..++|+++++.++..... +..+|+.--.++...| ++++++..++.++...++ +..+|+.....+.+. + +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSC
T ss_pred HHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCC
Confidence 334456667899999999885532 4455666666777777 599999999999988765 667788777777776 7 8
Q ss_pred hhhHHHHHcccCCC---CcchHHHHHHHHHhcCChh--------HHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCC--
Q 007329 146 LGHAWYVFGKMCDR---DLFSWNVLIGGYAKAGFFD--------EALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPD-- 212 (608)
Q Consensus 146 ~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~--------~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~-- 212 (608)
.++++.+++++.+. |..+|+--.-.+.+.|.++ ++++.++++.+.. +-|...|+.....+.+.+.
T Consensus 141 ~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d--p~N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD--GRNNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp CHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHTTSTTCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccc
Confidence 89999999999664 4456665555555555666 8999999999875 5677788888877777775
Q ss_pred -----hhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH--------------------HHHHHHHccCCC-------
Q 007329 213 -----LKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDL--------------------VRARLVFDGMPK------- 260 (608)
Q Consensus 213 -----~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~~~~------- 260 (608)
++++.+.++..+... +-|...|+-+-..+.+.|+. .........+..
T Consensus 219 ~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDT 297 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSC
T ss_pred cchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccccc
Confidence 678888888888775 56778888777777776653 334444444432
Q ss_pred --CCHhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 007329 261 --RDRISWNAMISGYFENGEYMKGLMLFIMMRE 291 (608)
Q Consensus 261 --~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 291 (608)
+++..+..++..|...|+.++|.++++.+.+
T Consensus 298 ~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 298 PLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 3556677777777777777778877777654
No 146
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.33 E-value=5e-06 Score=65.90 Aligned_cols=109 Identities=17% Similarity=0.117 Sum_probs=62.0
Q ss_pred HHHHHHHhHhcCCHHHHHHHHccCC---CCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccC
Q 007329 437 ANTLIDMYSKCKCIDKALEVFHQIP---DKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIG 513 (608)
Q Consensus 437 ~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~ 513 (608)
+..+...+...|++++|.+.|+++. ..+...+..+...+...|++++|+..++++....+.+..++..+...+...|
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 91 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQG 91 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc
Confidence 3344444444444444444444433 1233445555666666666666666666666334445666777777777777
Q ss_pred cHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHh
Q 007329 514 ALMCGKEIHAHALRIGVAFDGFLPNALLDMYVR 546 (608)
Q Consensus 514 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 546 (608)
++++|...++++.+..+. +...+..+..++..
T Consensus 92 ~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 92 DYDEAIEYYQKALELDPN-NAEAKQNLGNAKQK 123 (125)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHh
Confidence 777777777777766543 34444444444443
No 147
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.33 E-value=4.7e-06 Score=67.64 Aligned_cols=93 Identities=10% Similarity=-0.104 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHH
Q 007329 499 SVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGY 574 (608)
Q Consensus 499 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~ 574 (608)
...+..+...+...|++++|...++++.+..+. +...+..+..+|...|++++|...++++ +.+...|..+...|
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 334444444444444444444444444444332 3344444444444555555555544444 22344444555555
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 007329 575 AERGQGALAEEFFRKMID 592 (608)
Q Consensus 575 ~~~g~~~~A~~~~~~m~~ 592 (608)
...|++++|.+.|++..+
T Consensus 88 ~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 555555555555554443
No 148
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.33 E-value=1.5e-06 Score=76.28 Aligned_cols=129 Identities=15% Similarity=0.081 Sum_probs=56.6
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhcC---CC-CCCcchHHHHHHHhcCCCChhhHHHHHHHHHHh----CCC--Cc
Q 007329 162 FSWNVLIGGYAKAGFFDEALSLYQRMFWVG---GV-KPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRF----GYE--AD 231 (608)
Q Consensus 162 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~--~~ 231 (608)
.++..+...+...|++++|+..+++..+.. +. +.....+..+...+...|++++|.+.+++..+. |.. ..
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 106 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA 106 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 344444455555555555555555443310 00 111223334444444455555555544444332 101 11
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHccCCC-----CC----HhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 007329 232 VDVVNALITMYVKCGDLVRARLVFDGMPK-----RD----RISWNAMISGYFENGEYMKGLMLFIMMR 290 (608)
Q Consensus 232 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~ 290 (608)
...+..+...+...|++++|...+++... .+ ..++..+...+...|++++|.+.+++..
T Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 107 SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 23344455555555555555555544321 01 1223445555555556655555555443
No 149
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.32 E-value=4.4e-06 Score=70.36 Aligned_cols=95 Identities=12% Similarity=-0.071 Sum_probs=76.2
Q ss_pred cccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHh
Q 007329 465 VISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMY 544 (608)
Q Consensus 465 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 544 (608)
...|..+...+.+.|++++|++.|++.+...+.+...|..+..++...|++++|...++++++..+. +...|..+..+|
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 89 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 3467777788888888888888888888444557778888888888888888888888888887655 567777888888
Q ss_pred HhcCCHHHHHHHHHhc
Q 007329 545 VRCGRMKPAWNQFNSN 560 (608)
Q Consensus 545 ~~~g~~~~A~~~~~~~ 560 (608)
...|++++|.+.|+++
T Consensus 90 ~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHH
Confidence 8888888888888877
No 150
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.32 E-value=9.7e-06 Score=63.44 Aligned_cols=90 Identities=9% Similarity=0.038 Sum_probs=44.4
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhc
Q 007329 502 LVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAER 577 (608)
Q Consensus 502 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~ 577 (608)
+..+...+...|++++|...++++.+..+. +...+..++.+|...|++++|.+.++++ +.+...|..+...+...
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 334444444445555555555544444322 3344444455555555555555555544 22344555555555555
Q ss_pred CCHHHHHHHHHHHHH
Q 007329 578 GQGALAEEFFRKMID 592 (608)
Q Consensus 578 g~~~~A~~~~~~m~~ 592 (608)
|++++|.+.+++..+
T Consensus 86 ~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 86 NRFEEAKRTYEEGLK 100 (118)
T ss_dssp TCHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHH
Confidence 555555555555554
No 151
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.32 E-value=1.1e-05 Score=64.38 Aligned_cols=93 Identities=6% Similarity=-0.126 Sum_probs=76.1
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHh
Q 007329 467 SWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVR 546 (608)
Q Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 546 (608)
.|..+...+.+.|++++|+..|++.+...+.+...|..+..++...|++++|...++++++..+. +...+..+..+|..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHH
Confidence 45666777888888888888888888545557788888888888899999999999988887655 56777888888899
Q ss_pred cCCHHHHHHHHHhc
Q 007329 547 CGRMKPAWNQFNSN 560 (608)
Q Consensus 547 ~g~~~~A~~~~~~~ 560 (608)
.|++++|.+.|+++
T Consensus 85 ~~~~~~A~~~~~~a 98 (126)
T 3upv_A 85 VKEYASALETLDAA 98 (126)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHH
Confidence 99999999888877
No 152
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.31 E-value=7.7e-06 Score=67.42 Aligned_cols=95 Identities=12% Similarity=-0.077 Sum_probs=72.0
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHH
Q 007329 498 NSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTG 573 (608)
Q Consensus 498 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~ 573 (608)
+...+..+...+...|++++|...++++.+..+. +...|..+..+|...|++++|.+.|+++ +.++..|..+..+
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 4445666777777888888888888887776655 6667777778888888888888888776 4456777778888
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 007329 574 YAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 574 ~~~~g~~~~A~~~~~~m~~~ 593 (608)
|...|++++|.+.|++.++.
T Consensus 99 ~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888887764
No 153
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.30 E-value=5.1e-06 Score=66.83 Aligned_cols=115 Identities=6% Similarity=-0.102 Sum_probs=77.9
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHh
Q 007329 434 IIIANTLIDMYSKCKCIDKALEVFHQIPD---KNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACA 510 (608)
Q Consensus 434 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~ 510 (608)
...+..+...+.+.|++++|.+.|++..+ .+...|..+...+...|++++|++.+++.....+.+...+..+..++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 34455555556666666666666665432 234556666777777777788888887777444556778888888888
Q ss_pred ccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCC
Q 007329 511 RIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGR 549 (608)
Q Consensus 511 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 549 (608)
..|++++|.+.++++.+..+. +...+..+..++.+.|+
T Consensus 96 ~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHTC
T ss_pred HHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhcC
Confidence 888888888888888876554 45566667777766553
No 154
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.30 E-value=4.3e-06 Score=66.19 Aligned_cols=90 Identities=10% Similarity=-0.061 Sum_probs=60.7
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcC
Q 007329 503 VSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERG 578 (608)
Q Consensus 503 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g 578 (608)
..+...+.+.|++++|...++++++..+. +...|..+..++...|++++|...++++ +.+...|..+..+|...|
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 34445566667777777777766665544 5566666777777777777777777766 335667777777777777
Q ss_pred CHHHHHHHHHHHHHc
Q 007329 579 QGALAEEFFRKMIDS 593 (608)
Q Consensus 579 ~~~~A~~~~~~m~~~ 593 (608)
++++|...+++.++.
T Consensus 100 ~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 100 NANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHh
Confidence 777777777777653
No 155
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.29 E-value=1e-06 Score=81.83 Aligned_cols=92 Identities=13% Similarity=-0.030 Sum_probs=45.1
Q ss_pred hHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHH
Q 007329 299 MTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMES---KDVVSWTTMISCYE 375 (608)
Q Consensus 299 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~ 375 (608)
..+..+...+...|++++|...++..++.. +.+...+..+..+|.+.|++++|...+++..+ .+...+..+..+|.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344444555555566666666665555542 22444444555555555555555555554443 12334444444444
Q ss_pred cCCCchHHHHHHHHHH
Q 007329 376 GSVLPDKAVETYQMME 391 (608)
Q Consensus 376 ~~~~~~~a~~~~~~m~ 391 (608)
..|++++|+..|++..
T Consensus 84 ~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 84 EMESYDEAIANLQRAY 99 (281)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 4444444444444443
No 156
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.29 E-value=5e-06 Score=66.57 Aligned_cols=114 Identities=9% Similarity=-0.049 Sum_probs=73.8
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHccCC---CCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhcc
Q 007329 436 IANTLIDMYSKCKCIDKALEVFHQIP---DKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARI 512 (608)
Q Consensus 436 ~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~ 512 (608)
.+..+...+...|++++|...|++.. ..+...|..+...+...|++++|++.+++.....+.+...+..+...+...
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSL 93 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHh
Confidence 34444445555555555555555443 123445566666677777777777777777743444567777777888888
Q ss_pred CcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCH
Q 007329 513 GALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRM 550 (608)
Q Consensus 513 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 550 (608)
|++++|...++++.+..+. +...+..+..++.+.|++
T Consensus 94 ~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 94 NKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLREA 130 (131)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhcC
Confidence 8888888888888776544 556666777777776654
No 157
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.29 E-value=1.2e-06 Score=75.10 Aligned_cols=94 Identities=10% Similarity=0.017 Sum_probs=46.2
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHH-HhccCcH--HHHHHHHHHHHHhCCCCCccHHHHHHH
Q 007329 466 ISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSA-CARIGAL--MCGKEIHAHALRIGVAFDGFLPNALLD 542 (608)
Q Consensus 466 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~-~~~~~~~--~~a~~~~~~~~~~~~~p~~~~~~~l~~ 542 (608)
..|..+...|...|++++|+..|++.....+.+...+..+..+ +...|++ ++|...++++.+..+. +...+..+..
T Consensus 45 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~ 123 (177)
T 2e2e_A 45 EQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSN-EITALMLLAS 123 (177)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 3444444444445555555555555442222344444444444 4445554 5555555555554433 3344445555
Q ss_pred HhHhcCCHHHHHHHHHhc
Q 007329 543 MYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 543 ~~~~~g~~~~A~~~~~~~ 560 (608)
+|...|++++|...++++
T Consensus 124 ~~~~~g~~~~A~~~~~~a 141 (177)
T 2e2e_A 124 DAFMQANYAQAIELWQKV 141 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHH
Confidence 555555555555555554
No 158
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.27 E-value=5.4e-06 Score=67.87 Aligned_cols=95 Identities=12% Similarity=-0.104 Sum_probs=73.4
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHH
Q 007329 498 NSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTG 573 (608)
Q Consensus 498 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~ 573 (608)
+...+..+...+...|++++|...++++.+.++. +...|..+..+|.+.|++++|...|+++ +.++..|..+..+
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 3445566677778888888888888888877655 6677777888888888888888888877 4466777888888
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 007329 574 YAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 574 ~~~~g~~~~A~~~~~~m~~~ 593 (608)
|...|++++|.+.|++.++.
T Consensus 96 ~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 88888888888888888765
No 159
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.27 E-value=4.6e-06 Score=64.68 Aligned_cols=93 Identities=11% Similarity=-0.027 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CC--CHHHHHHHHHH
Q 007329 500 VTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ER--DVSAWNILLTG 573 (608)
Q Consensus 500 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~--~~~~~~~l~~~ 573 (608)
..+..+...+...|++++|...++++.+..+. +...+..+..+|...|++++|.+.++++ +. +...|..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 34445555666666666666666666665443 4455666677777777777777777666 33 46677777777
Q ss_pred HHhc-CCHHHHHHHHHHHHHc
Q 007329 574 YAER-GQGALAEEFFRKMIDS 593 (608)
Q Consensus 574 ~~~~-g~~~~A~~~~~~m~~~ 593 (608)
+... |++++|.+.+++..+.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHHHHHhhc
Confidence 7777 8888888888777765
No 160
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.27 E-value=1.4e-05 Score=62.60 Aligned_cols=108 Identities=12% Similarity=-0.076 Sum_probs=90.8
Q ss_pred cccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHh
Q 007329 465 VISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMY 544 (608)
Q Consensus 465 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 544 (608)
...|..+...+...|++++|...|++.....+.+...+..+...+...|++++|...++++.+..+. +...+..+..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 82 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 3467778889999999999999999998555567888999999999999999999999999987654 677888899999
Q ss_pred HhcCCHHHHHHHHHhc----CCCHHHHHHHHHH
Q 007329 545 VRCGRMKPAWNQFNSN----ERDVSAWNILLTG 573 (608)
Q Consensus 545 ~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~ 573 (608)
...|++++|.+.++++ +.+...+..+...
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 9999999999999988 3355555555443
No 161
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.25 E-value=5.7e-06 Score=79.00 Aligned_cols=144 Identities=8% Similarity=-0.095 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhC
Q 007329 399 EITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLN 478 (608)
Q Consensus 399 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 478 (608)
...+..+...+.+.|+++.|...|+..++........ ..+.+.++- ......|..+..+|.+.
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~-------------~~~~~~~~~----~~~~~~~~nla~~~~~~ 209 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSF-------------SNEEAQKAQ----ALRLASHLNLAMCHLKL 209 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCC-------------CSHHHHHHH----HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccC-------------ChHHHHHHH----HHHHHHHHHHHHHHHHc
Confidence 3455566666666677777777666666543211100 000000000 00135677788888888
Q ss_pred CCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHH-HHHH
Q 007329 479 NRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPA-WNQF 557 (608)
Q Consensus 479 ~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A-~~~~ 557 (608)
|++++|+..+++.+.-.+.+...|..+..++...|++++|...++++++..+. +...+..+..++.+.|++++| ...+
T Consensus 210 g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~ 288 (336)
T 1p5q_A 210 QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLY 288 (336)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888988888888545567888888999999999999999999999887665 567788888889999998888 4455
Q ss_pred Hhc
Q 007329 558 NSN 560 (608)
Q Consensus 558 ~~~ 560 (608)
++|
T Consensus 289 ~~~ 291 (336)
T 1p5q_A 289 ANM 291 (336)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 162
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.25 E-value=6.2e-06 Score=66.07 Aligned_cols=106 Identities=13% Similarity=0.036 Sum_probs=62.5
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCC--CC----ccHHHHH
Q 007329 467 SWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVA--FD----GFLPNAL 540 (608)
Q Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--p~----~~~~~~l 540 (608)
.|..+...+...|++++|+..|++.....+.+...+..+...+...|++++|...++++.+..+. ++ ...+..+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 34555566666666666666666666333445566666666666667777777666666654332 11 4455556
Q ss_pred HHHhHhcCCHHHHHHHHHhc---CCCHHHHHHHHH
Q 007329 541 LDMYVRCGRMKPAWNQFNSN---ERDVSAWNILLT 572 (608)
Q Consensus 541 ~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~l~~ 572 (608)
+.+|.+.|++++|.+.++++ .|+...+..+..
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~ 120 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 66666666666666666665 445544444433
No 163
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.23 E-value=1.6e-05 Score=66.94 Aligned_cols=95 Identities=12% Similarity=-0.060 Sum_probs=46.5
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhc
Q 007329 435 IIANTLIDMYSKCKCIDKALEVFHQIPD---KNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACAR 511 (608)
Q Consensus 435 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~ 511 (608)
..+..+...+.+.|++++|.+.|++..+ .+...|..+..+|.+.|++++|+..|++.+...+.+...|..+..++..
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 91 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFD 91 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3344444455555555555555554431 2334444555555555555555555555552223344455555555555
Q ss_pred cCcHHHHHHHHHHHHHhC
Q 007329 512 IGALMCGKEIHAHALRIG 529 (608)
Q Consensus 512 ~~~~~~a~~~~~~~~~~~ 529 (608)
.|++++|.+.++++++..
T Consensus 92 ~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 92 MADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhC
Confidence 555555555555555443
No 164
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.21 E-value=1.2e-05 Score=65.05 Aligned_cols=96 Identities=8% Similarity=-0.093 Sum_probs=73.5
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHH
Q 007329 464 NVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDM 543 (608)
Q Consensus 464 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 543 (608)
+...|..+...+...|++++|+..|++.+...+.+...+..+..++...|++++|...++++.+..+. +...+..+..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHHH
Confidence 44566677777788888888888888877444556777788888888888888888888888877654 56677778888
Q ss_pred hHhcCCHHHHHHHHHhc
Q 007329 544 YVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 544 ~~~~g~~~~A~~~~~~~ 560 (608)
|...|++++|.+.|+++
T Consensus 87 ~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 87 QLEMESYDEAIANLQRA 103 (137)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHH
Confidence 88888888888888776
No 165
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.20 E-value=3e-05 Score=63.65 Aligned_cols=94 Identities=12% Similarity=-0.029 Sum_probs=53.7
Q ss_pred cccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCC----HHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHH
Q 007329 465 VISWTSIILGLRLNNRSFEALIFFRKMMLNLKPN----SVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNAL 540 (608)
Q Consensus 465 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 540 (608)
...+..+...+...|++++|++.|++.. ...|+ ...+..+..++...|++++|...++++.+..+. +...+..+
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ 105 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQAL-GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHH-TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHH-HHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHHHH
Confidence 3445555666666666666666666666 33344 445555555666666666666666666554332 34445555
Q ss_pred HHHhHhcCCHHHHHHHHHhc
Q 007329 541 LDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 541 ~~~~~~~g~~~~A~~~~~~~ 560 (608)
..+|...|++++|.+.|+++
T Consensus 106 a~~~~~~~~~~~A~~~~~~a 125 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRC 125 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 55566666666666655554
No 166
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.18 E-value=0.00039 Score=64.89 Aligned_cols=218 Identities=11% Similarity=0.012 Sum_probs=139.6
Q ss_pred cCCCch-HHHHHHHHHHHCCCCCCHHH-HHHHHHHHHccC----------ChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 007329 376 GSVLPD-KAVETYQMMEAEGSMPDEIT-IASVLSACACLG----------NLDLGIKLHQLAMRTGLISYIIIANTLIDM 443 (608)
Q Consensus 376 ~~~~~~-~a~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~----------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 443 (608)
+.|.++ +|+.+++.+... .|+..| |+.--..+...+ .+++++.+++.+.... +-+..+|+.-..+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 41 QAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 444443 567777776664 344332 222211121111 1566777777777665 4455666655555
Q ss_pred hHhcC--CHHHHHHHHccCCC---CCcccHHHHHHHHHhCCC-chHHHHHHHHhHhCCCCCHHHHHHHHHHHhcc-----
Q 007329 444 YSKCK--CIDKALEVFHQIPD---KNVISWTSIILGLRLNNR-SFEALIFFRKMMLNLKPNSVTLVSILSACARI----- 512 (608)
Q Consensus 444 ~~~~g--~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~-~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~----- 512 (608)
+.+.| .+++++.+++++.+ .|...|+.-...+...|. ++++++.+++++...+-|...|+.....+...
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~ 197 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 197 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC-
T ss_pred HhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccc
Confidence 55666 47888888887763 455677777777777777 48888888888855566777776665555443
Q ss_pred ---------CcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhc-----------CCHHHHHHHHHhc---CCCHHHHHH
Q 007329 513 ---------GALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRC-----------GRMKPAWNQFNSN---ERDVSAWNI 569 (608)
Q Consensus 513 ---------~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~---~~~~~~~~~ 569 (608)
+.++++++.+..++...+. |...|+-+-..+.+. +.++++++.++++ .||. .|..
T Consensus 198 ~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l 275 (331)
T 3dss_A 198 SGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-KWCL 275 (331)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHH
T ss_pred cccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-chHH
Confidence 4578888888888887776 777777666655555 4578888888888 6653 3432
Q ss_pred HHH-----HHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 570 LLT-----GYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 570 l~~-----~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
+.. +....|..+++.+++.++++. .|...
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--Dp~r~ 309 (331)
T 3dss_A 276 LTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRA 309 (331)
T ss_dssp HHHHHHHHHHCTTTTHHHHHHHHHHHHHH--CGGGH
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHHh--Ccchh
Confidence 222 222467788899999999874 66543
No 167
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.17 E-value=9.9e-06 Score=64.03 Aligned_cols=93 Identities=13% Similarity=-0.112 Sum_probs=77.0
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHh
Q 007329 467 SWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVR 546 (608)
Q Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 546 (608)
.+..+...+.+.|++++|+..|++.+...+.+...+..+..++...|++++|+..++++.+..+. +...+..+..+|.+
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN 97 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 45566777888889999999998888555567788888888888999999999999988887765 56677888888999
Q ss_pred cCCHHHHHHHHHhc
Q 007329 547 CGRMKPAWNQFNSN 560 (608)
Q Consensus 547 ~g~~~~A~~~~~~~ 560 (608)
.|++++|...++++
T Consensus 98 ~g~~~~A~~~~~~a 111 (121)
T 1hxi_A 98 EHNANAALASLRAW 111 (121)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 99999999988887
No 168
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.13 E-value=6.1e-05 Score=74.86 Aligned_cols=190 Identities=11% Similarity=0.007 Sum_probs=108.0
Q ss_pred HHHHHcCCCchHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHccCChHHHHHHHHHHHHhC-CCCc
Q 007329 371 ISCYEGSVLPDKAVETYQMMEAEGSMPD----------------EITIASVLSACACLGNLDLGIKLHQLAMRTG-LISY 433 (608)
Q Consensus 371 i~~~~~~~~~~~a~~~~~~m~~~g~~p~----------------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~ 433 (608)
...+.+.|++++|++.|.++.+...... ...+..+...|...|++++|.+.+..+.+.- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3456778889999998888887642211 1236667777888888888888777665421 1111
Q ss_pred h----hHHHHHHHHhHhcCCHHHHHHHHccCCC-----CC----cccHHHHHHHHHhCCCchHHHHHHHHhH---hCCC-
Q 007329 434 I----IIANTLIDMYSKCKCIDKALEVFHQIPD-----KN----VISWTSIILGLRLNNRSFEALIFFRKMM---LNLK- 496 (608)
Q Consensus 434 ~----~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~---~~~~- 496 (608)
. .+.+.+...+...|+.+.|.++++.... .+ ..++..+...+...|++++|..++++.. .+..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 1223333444556677777776665431 11 1245556666666777777777766665 1111
Q ss_pred -C-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhC--C-CCC---ccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 497 -P-NSVTLVSILSACARIGALMCGKEIHAHALRIG--V-AFD---GFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 497 -p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~-~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
+ ...++..++..|...|++++|..+++++.... . .|. ...+..++..+...|++++|...|.++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 1 12355566666666677777766666655321 1 110 233445555566666666666665554
No 169
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.12 E-value=1.7e-05 Score=66.18 Aligned_cols=127 Identities=16% Similarity=0.102 Sum_probs=84.2
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHhHh--CCCCC----HHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCC-C----cc
Q 007329 467 SWTSIILGLRLNNRSFEALIFFRKMML--NLKPN----SVTLVSILSACARIGALMCGKEIHAHALRIGVAF-D----GF 535 (608)
Q Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~m~~--~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~----~~ 535 (608)
++..+...+...|++++|++.+++... ...++ ..++..+...+...|++++|...++++.+..... + ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 344555566666666666666666651 11111 1356667777777788888888777766432111 1 34
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHHhc------CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 536 LPNALLDMYVRCGRMKPAWNQFNSN------ERD----VSAWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~~~~~~~------~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
.+..+...|...|++++|.+.+++. ..+ ...+..+...+...|++++|.+.+++..+.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5666777888888888888888776 222 346778888889999999999999888753
No 170
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.11 E-value=2e-06 Score=75.13 Aligned_cols=94 Identities=15% Similarity=-0.046 Sum_probs=69.5
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhH
Q 007329 466 ISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYV 545 (608)
Q Consensus 466 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 545 (608)
..|..+..+|.+.|++++|+..+++.+...+.+...+..+..++...|++++|...++++.+..+. +...+..+..++.
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHH
Confidence 567777888888899999999998888445567788888889999999999999999998887654 5667777777887
Q ss_pred hcCCHHHHH-HHHHhc
Q 007329 546 RCGRMKPAW-NQFNSN 560 (608)
Q Consensus 546 ~~g~~~~A~-~~~~~~ 560 (608)
..|+.+++. ..+..+
T Consensus 168 ~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 168 KLKEARKKDKLTFGGM 183 (198)
T ss_dssp HHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 777777665 344443
No 171
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.10 E-value=5.2e-05 Score=60.50 Aligned_cols=90 Identities=9% Similarity=-0.096 Sum_probs=39.7
Q ss_pred HHHHHHhCCCchHHHHHHHHhHhCCCCCH---HHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCC--ccHHHHHHHHhH
Q 007329 471 IILGLRLNNRSFEALIFFRKMMLNLKPNS---VTLVSILSACARIGALMCGKEIHAHALRIGVAFD--GFLPNALLDMYV 545 (608)
Q Consensus 471 l~~~~~~~~~~~~A~~~~~~m~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~ 545 (608)
+...+...|++++|+..|++.....+.+. ..+..+..++...|++++|...++++.+..+... ...+..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 34444555555555555555542112122 2444444444455555555555555444433211 223334444444
Q ss_pred hcCCHHHHHHHHHhc
Q 007329 546 RCGRMKPAWNQFNSN 560 (608)
Q Consensus 546 ~~g~~~~A~~~~~~~ 560 (608)
..|++++|.+.|+++
T Consensus 88 ~~g~~~~A~~~~~~~ 102 (129)
T 2xev_A 88 GEGKNTEAQQTLQQV 102 (129)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHH
Confidence 444444444444444
No 172
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.10 E-value=4.2e-05 Score=62.71 Aligned_cols=103 Identities=11% Similarity=-0.025 Sum_probs=88.3
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCC--CccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHH
Q 007329 496 KPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAF--DGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNI 569 (608)
Q Consensus 496 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~ 569 (608)
+.+...+..+...+...|++++|.+.++++.+..+.. ....+..+..+|...|++++|.+.++++ +.+...|..
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 3467788889999999999999999999998765431 0677888999999999999999999987 447889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 570 LLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 570 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
+...|...|++++|.+.|++..+. .|+..
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~--~p~~~ 133 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSL--EPKNK 133 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CSSCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc--CCCcH
Confidence 999999999999999999999986 66654
No 173
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.08 E-value=2.7e-05 Score=62.15 Aligned_cols=95 Identities=8% Similarity=0.063 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCC-------HHHH
Q 007329 499 SVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERD-------VSAW 567 (608)
Q Consensus 499 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~-------~~~~ 567 (608)
...+..+...+...|++++|...++++.+..+. +...+..++..|...|++++|...++++ +.+ ..+|
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 356778888999999999999999999987654 6778888999999999999999999988 223 7789
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 007329 568 NILLTGYAERGQGALAEEFFRKMIDSK 594 (608)
Q Consensus 568 ~~l~~~~~~~g~~~~A~~~~~~m~~~g 594 (608)
..+...+...|++++|.+.|++..+..
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 999999999999999999999999863
No 174
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.05 E-value=8.9e-05 Score=59.09 Aligned_cols=95 Identities=11% Similarity=-0.038 Sum_probs=71.1
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhCCCCCc---cHHHHHHHHhHhcCCHHHHHHHHHhc---CC-C---HHHHHHHHH
Q 007329 503 VSILSACARIGALMCGKEIHAHALRIGVAFDG---FLPNALLDMYVRCGRMKPAWNQFNSN---ER-D---VSAWNILLT 572 (608)
Q Consensus 503 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~---~~-~---~~~~~~l~~ 572 (608)
..+...+...|++++|...++.+.+..+. +. ..+..++.+|.+.|++++|.+.++++ .| + ...+..+..
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 34556677788888888888888876554 23 46667788888888888888888877 34 3 566778888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 573 GYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 573 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
++...|++++|...|+++.+. .|+..
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~--~p~~~ 110 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ--YPGSD 110 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTSH
T ss_pred HHHHcCCHHHHHHHHHHHHHH--CCCCh
Confidence 888888888888888888875 56554
No 175
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.03 E-value=2.9e-05 Score=59.98 Aligned_cols=95 Identities=9% Similarity=-0.136 Sum_probs=54.9
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCC-CCccHHHHHHHHh
Q 007329 466 ISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVA-FDGFLPNALLDMY 544 (608)
Q Consensus 466 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~ 544 (608)
..|..+...+...|++++|+..|++.....+.+...+..+...+...|++++|.+.++++.+..+. .+...+..+..+|
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 445555555666666666666666665333345555666666666666666666666666654322 0244555566666
Q ss_pred Hhc-CCHHHHHHHHHhc
Q 007329 545 VRC-GRMKPAWNQFNSN 560 (608)
Q Consensus 545 ~~~-g~~~~A~~~~~~~ 560 (608)
.+. |++++|.+.++++
T Consensus 87 ~~~~~~~~~A~~~~~~~ 103 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARA 103 (112)
T ss_dssp TTCSSCSHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHH
Confidence 666 6666666666655
No 176
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.03 E-value=1.1e-05 Score=77.05 Aligned_cols=97 Identities=10% Similarity=-0.014 Sum_probs=53.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc---CC-CHHHHHHHHHHH-H
Q 007329 501 TLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN---ER-DVSAWNILLTGY-A 575 (608)
Q Consensus 501 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~-~~~~~~~l~~~~-~ 575 (608)
.|..+..++.+.|++++|...++++++..+. +...|..+..+|...|++++|.+.|+++ .| +...+..+.... .
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~ 310 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ 310 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 7888889999999999999999999987654 6778888999999999999999999998 33 455666666553 3
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 576 ERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 576 ~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
..+..+.+..+|++|... .|++.
T Consensus 311 ~~~~~~~a~~~~~~~l~~--~p~~~ 333 (338)
T 2if4_A 311 EKALYQKQKEMYKGIFKG--KDEGG 333 (338)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHhhCC--CCCCC
Confidence 456778889999999865 55543
No 177
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.03 E-value=2.4e-05 Score=78.11 Aligned_cols=119 Identities=10% Similarity=-0.035 Sum_probs=57.4
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHccCCC--C-C---------------cccHHHHHHHHHhCCCchHHHHHHHHhHhCCC
Q 007329 435 IIANTLIDMYSKCKCIDKALEVFHQIPD--K-N---------------VISWTSIILGLRLNNRSFEALIFFRKMMLNLK 496 (608)
Q Consensus 435 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~ 496 (608)
..+..+...|.+.|++++|...|++..+ | + ...|..+..+|.+.|++++|+..+++.+...+
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 348 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 348 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 3444555555566666666665555431 1 1 23444455555555555555555555553233
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHH
Q 007329 497 PNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAW 554 (608)
Q Consensus 497 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 554 (608)
.+...|..+..++...|++++|...|+++++..+. +...+..+..++.+.|+.++|.
T Consensus 349 ~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 349 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555544332 3344444555555555544443
No 178
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.00 E-value=8.1e-06 Score=81.95 Aligned_cols=113 Identities=10% Similarity=-0.078 Sum_probs=54.5
Q ss_pred HHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHH
Q 007329 475 LRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAW 554 (608)
Q Consensus 475 ~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 554 (608)
+.+.|++++|++.|++..+..+.+...+..+..++.+.|++++|.+.++++.+..+. +...+..+..+|.+.|++++|.
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHH
Confidence 334455555555555555323334555555555555555555555555555554332 3444555555555555555555
Q ss_pred HHHHhc---C-CCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 007329 555 NQFNSN---E-RDVSAWNILLTG--YAERGQGALAEEFFR 588 (608)
Q Consensus 555 ~~~~~~---~-~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 588 (608)
+.++++ . .+...+..+..+ +.+.|++++|.+.++
T Consensus 95 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 95 RDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 555554 2 233334444333 455555555555555
No 179
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.99 E-value=0.00039 Score=64.93 Aligned_cols=186 Identities=9% Similarity=-0.034 Sum_probs=139.2
Q ss_pred ccCChH-HHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCC----------HHHHHHHHccCCC---CCcccHHHHHHHHH
Q 007329 411 CLGNLD-LGIKLHQLAMRTGLISYIIIANTLIDMYSKCKC----------IDKALEVFHQIPD---KNVISWTSIILGLR 476 (608)
Q Consensus 411 ~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 476 (608)
+.|.++ +|+.+.+.++..+ +-+..+|+.--..+...+. +++++.+++.+.. .+..+|+.-...+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 445544 7888888888765 3333444433333322222 5778888887763 46678888777888
Q ss_pred hCCC--chHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCc-HHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhc------
Q 007329 477 LNNR--SFEALIFFRKMMLNLKPNSVTLVSILSACARIGA-LMCGKEIHAHALRIGVAFDGFLPNALLDMYVRC------ 547 (608)
Q Consensus 477 ~~~~--~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~------ 547 (608)
..++ ++++++++.++....+-|...|+.-...+...|. ++++++.+..+++..+. |...|+....++.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~ 198 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDS 198 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC--
T ss_pred ccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhcccc
Confidence 8884 7899999999996667788888888888888888 58999999999998877 778888777666655
Q ss_pred --------CCHHHHHHHHHhc----CCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHcCCCCCch
Q 007329 548 --------GRMKPAWNQFNSN----ERDVSAWNILLTGYAER-----------GQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 548 --------g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
+.++++++.++++ +.|...|+-+-..+.+. +.++++++.++++.+. .||..
T Consensus 199 ~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~pd~~ 272 (331)
T 3dss_A 199 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--EPENK 272 (331)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CTTCH
T ss_pred ccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--Ccccc
Confidence 5688999999887 66888998766666555 4689999999999985 88876
No 180
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.98 E-value=3.9e-05 Score=76.98 Aligned_cols=115 Identities=13% Similarity=-0.014 Sum_probs=76.7
Q ss_pred HhHhcCCHHHHHHHHccCC---CCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHH
Q 007329 443 MYSKCKCIDKALEVFHQIP---DKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGK 519 (608)
Q Consensus 443 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 519 (608)
.+.+.|++++|.+.|++.. ..+...|..+..+|.+.|++++|++.+++..+..+.+...+..+..++...|++++|.
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4455666666666666554 2235567777777777777888888887777545556777778888888888888888
Q ss_pred HHHHHHHHhCCCCCccHHHHHHHH--hHhcCCHHHHHHHHH
Q 007329 520 EIHAHALRIGVAFDGFLPNALLDM--YVRCGRMKPAWNQFN 558 (608)
Q Consensus 520 ~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~ 558 (608)
+.++++.+..+. +...+..+..+ +.+.|++++|.+.++
T Consensus 95 ~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 95 RDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 888888776554 44555555555 777788888888877
No 181
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.97 E-value=4.8e-05 Score=63.70 Aligned_cols=93 Identities=12% Similarity=0.025 Sum_probs=57.5
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHhHhC------------------CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 007329 467 SWTSIILGLRLNNRSFEALIFFRKMMLN------------------LKPNSVTLVSILSACARIGALMCGKEIHAHALRI 528 (608)
Q Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~------------------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 528 (608)
.+......+.+.|++++|+..|.+.+.- .+.+...|..+..++.+.|++++|...++++++.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 4556667777788888888888777621 1112245555666666666666666666666665
Q ss_pred CCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 529 GVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 529 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
.+. +...|..++.+|...|++++|.+.|+++
T Consensus 93 ~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~a 123 (162)
T 3rkv_A 93 EET-NEKALFRRAKARIAAWKLDEAEEDLKLL 123 (162)
T ss_dssp STT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCc-chHHHHHHHHHHHHHhcHHHHHHHHHHH
Confidence 443 4555556666666666666666666655
No 182
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.96 E-value=3.7e-05 Score=74.23 Aligned_cols=87 Identities=10% Similarity=-0.019 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHH
Q 007329 498 NSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTG 573 (608)
Q Consensus 498 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~ 573 (608)
+...|..+..++.+.|++++|.+.++++++..+. +...+..+..+|.+.|++++|.+.|+++ +.+...+..+...
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~ 350 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKV 350 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3456667777777777777777777777765543 4566667777777778888887777776 3356666777777
Q ss_pred HHhcCCHHHHHH
Q 007329 574 YAERGQGALAEE 585 (608)
Q Consensus 574 ~~~~g~~~~A~~ 585 (608)
+...++.+++..
T Consensus 351 ~~~~~~~~~a~k 362 (370)
T 1ihg_A 351 KQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666665543
No 183
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.94 E-value=9.8e-05 Score=73.35 Aligned_cols=185 Identities=8% Similarity=-0.103 Sum_probs=133.8
Q ss_pred HHHHHhcCChHHHHHHHhhCCC--C---Ch---------------hhHHHHHHHHHcCCCchHHHHHHHHHHHCC-CCCC
Q 007329 340 IKMYLSFGNREEGEKVFSRMES--K---DV---------------VSWTTMISCYEGSVLPDKAVETYQMMEAEG-SMPD 398 (608)
Q Consensus 340 ~~~~~~~~~~~~a~~~~~~~~~--~---~~---------------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~ 398 (608)
...+.+.|++++|++.|..+.+ + +. ..+..+...|...|++++|.+.+..+...- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4567889999999999988754 1 10 236778889999999999999998876531 1222
Q ss_pred HH----HHHHHHHHHHccCChHHHHHHHHHHHHh----CCC-CchhHHHHHHHHhHhcCCHHHHHHHHccCC----C---
Q 007329 399 EI----TIASVLSACACLGNLDLGIKLHQLAMRT----GLI-SYIIIANTLIDMYSKCKCIDKALEVFHQIP----D--- 462 (608)
Q Consensus 399 ~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~--- 462 (608)
.. ..+.+-..+...|+.+.+..++...... +.. .-..++..+...|...|++++|..++++.. .
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 22 2222333344678999999999877642 222 224577889999999999999999988754 1
Q ss_pred -C-CcccHHHHHHHHHhCCCchHHHHHHHHhH---hCCCCC----HHHHHHHHHHHhccCcHHHHHHHHHH
Q 007329 463 -K-NVISWTSIILGLRLNNRSFEALIFFRKMM---LNLKPN----SVTLVSILSACARIGALMCGKEIHAH 524 (608)
Q Consensus 463 -~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~---~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~ 524 (608)
+ ....|..++..|...|++++|..++++.. .....+ ...+..+...+...+++++|...+.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~ 241 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFE 241 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 1 12478888999999999999999999987 223222 23566777788889999999887764
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.93 E-value=1e-05 Score=63.56 Aligned_cols=82 Identities=11% Similarity=0.047 Sum_probs=54.3
Q ss_pred CCCchHHHHHHHHhHhC---CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHH
Q 007329 478 NNRSFEALIFFRKMMLN---LKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAW 554 (608)
Q Consensus 478 ~~~~~~A~~~~~~m~~~---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 554 (608)
.|++++|+..|++.+.. .+.+...+..+..++...|++++|...++++++..+. +...+..+..+|.+.|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 56777788888777722 1224456667777777777777777777777776655 4566666777777777777777
Q ss_pred HHHHhc
Q 007329 555 NQFNSN 560 (608)
Q Consensus 555 ~~~~~~ 560 (608)
+.++++
T Consensus 82 ~~~~~a 87 (117)
T 3k9i_A 82 ELLLKI 87 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777766
No 185
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.91 E-value=7.3e-05 Score=62.60 Aligned_cols=95 Identities=13% Similarity=-0.045 Sum_probs=53.4
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHccCCCC---------------------CcccHHHHHHHHHhCCCchHHHHHHHHhHhC
Q 007329 436 IANTLIDMYSKCKCIDKALEVFHQIPDK---------------------NVISWTSIILGLRLNNRSFEALIFFRKMMLN 494 (608)
Q Consensus 436 ~~~~li~~~~~~g~~~~A~~~~~~~~~~---------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 494 (608)
.+......+.+.|++++|...|.+..+- +...|..+..+|.+.|++++|+..+++.+.-
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3445555566666666666655544311 1134555556666666666666666666533
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCC
Q 007329 495 LKPNSVTLVSILSACARIGALMCGKEIHAHALRIGV 530 (608)
Q Consensus 495 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 530 (608)
.+.+...|..+..++...|++++|...++++.+..+
T Consensus 93 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p 128 (162)
T 3rkv_A 93 EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP 128 (162)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCC
Confidence 344455666666666666666666666666665543
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.90 E-value=2.4e-05 Score=61.39 Aligned_cols=82 Identities=12% Similarity=0.013 Sum_probs=54.1
Q ss_pred cCcHHHHHHHHHHHHHhCC--CCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHH
Q 007329 512 IGALMCGKEIHAHALRIGV--AFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEE 585 (608)
Q Consensus 512 ~~~~~~a~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~ 585 (608)
.|++++|+..++++++.+. .-+...+..++.+|.+.|++++|.+.++++ +.+...+..+..++...|++++|.+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 4667777777777776531 113456666777777777777777777776 3456677777777777777777777
Q ss_pred HHHHHHHc
Q 007329 586 FFRKMIDS 593 (608)
Q Consensus 586 ~~~~m~~~ 593 (608)
.+++.++.
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77777665
No 187
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.84 E-value=0.00014 Score=72.52 Aligned_cols=119 Identities=9% Similarity=-0.044 Sum_probs=79.4
Q ss_pred HHhCCCchHHHHHHHHhH----hCCCCC----HHHHHHHHHHHhccCcHHHHHHHHHHHHHh-----CCC-CC-ccHHHH
Q 007329 475 LRLNNRSFEALIFFRKMM----LNLKPN----SVTLVSILSACARIGALMCGKEIHAHALRI-----GVA-FD-GFLPNA 539 (608)
Q Consensus 475 ~~~~~~~~~A~~~~~~m~----~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~-p~-~~~~~~ 539 (608)
+...|++++|+.++++.+ .-+.|+ ..+++.|..+|...|++++|..+++++++. |.. |+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 445566666666666655 112222 346777777888888888888877776532 322 11 345677
Q ss_pred HHHHhHhcCCHHHHHHHHHhc--------CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 540 LLDMYVRCGRMKPAWNQFNSN--------ERD----VSAWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 540 l~~~~~~~g~~~~A~~~~~~~--------~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
|...|...|++++|..+++++ .|| ..+.+.+..++...|++++|..+++++++.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888765 333 234556777777888899999999988764
No 188
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.80 E-value=0.00055 Score=55.25 Aligned_cols=110 Identities=13% Similarity=-0.042 Sum_probs=92.3
Q ss_pred CCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHh----cCCHHHHH
Q 007329 479 NRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVR----CGRMKPAW 554 (608)
Q Consensus 479 ~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~ 554 (608)
+++++|++.|++..+.-.|+.. +...|...+.+++|.+.+++..+.| ++..+..|...|.. .+++++|.
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3578899999988844345544 7777777788899999999998875 66778888888988 89999999
Q ss_pred HHHHhc--CCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCC
Q 007329 555 NQFNSN--ERDVSAWNILLTGYAE----RGQGALAEEFFRKMIDSKG 595 (608)
Q Consensus 555 ~~~~~~--~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~ 595 (608)
+.|++. ..++..+..|...|.. .+++++|.++|++..+.|.
T Consensus 82 ~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 82 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999998 7788999999999998 8999999999999988753
No 189
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.78 E-value=0.00014 Score=59.35 Aligned_cols=58 Identities=16% Similarity=0.212 Sum_probs=38.3
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHHhc----------CC-CHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 536 LPNALLDMYVRCGRMKPAWNQFNSN----------ER-DVSAW----NILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~~~~~~~----------~~-~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
.|..+..++.+.|++++|+..++++ .| +...| .....++...|++++|+..|++.++.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 5555555566666666655555443 33 34566 77788888888888888888888764
No 190
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.77 E-value=9.1e-05 Score=71.48 Aligned_cols=140 Identities=10% Similarity=-0.088 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhC
Q 007329 399 EITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLN 478 (608)
Q Consensus 399 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 478 (608)
...+..+...+.+.|++++|...++..++.- +.. ......+++ ......+...|..+..+|.+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~~~----~~~~~~~~~~~~nla~~~~~~ 286 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDADG----AKLQPVALSCVLNIGACKLKM 286 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHHHH----GGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChHHH----HHHHHHHHHHHHHHHHHHHhc
Confidence 4567777888888899999998888777521 000 000011111 111112346778888889999
Q ss_pred CCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHH
Q 007329 479 NRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWN 555 (608)
Q Consensus 479 ~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 555 (608)
|++++|++.+++.+...+.+...+..+..++...|++++|.+.++++.+..+. +...+..+..++.+.++.+++.+
T Consensus 287 g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 287 SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998444557788889999999999999999999999987655 66777778888888888877754
No 191
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.77 E-value=0.00015 Score=72.41 Aligned_cols=121 Identities=13% Similarity=-0.072 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCc--------------hhHHHHHHHHhHhcCCHHHHHHHHccCCC--
Q 007329 399 EITIASVLSACACLGNLDLGIKLHQLAMRTGLISY--------------IIIANTLIDMYSKCKCIDKALEVFHQIPD-- 462 (608)
Q Consensus 399 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~-- 462 (608)
...+..+...+.+.|+++.|...|+.+++...... ...|..+..+|.+.|++++|+..+++..+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 34555566666666677777766666665432211 35566666666666777776666666542
Q ss_pred -CCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHH
Q 007329 463 -KNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGK 519 (608)
Q Consensus 463 -~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 519 (608)
.+...|..+..+|...|++++|+..|++.+.-.+.+...+..+..++.+.++.+++.
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666677777777776666322334445555666666666655544
No 192
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.76 E-value=0.00015 Score=59.08 Aligned_cols=91 Identities=16% Similarity=0.013 Sum_probs=71.2
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHhCCCC--------CH-----HHHHHHHHHHhccCcHHHHHHHHHHHHHh------
Q 007329 468 WTSIILGLRLNNRSFEALIFFRKMMLNLKP--------NS-----VTLVSILSACARIGALMCGKEIHAHALRI------ 528 (608)
Q Consensus 468 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p--------~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------ 528 (608)
+......+.+.|++++|++.|++.++ +.| +. ..|..+..++.+.|++++|+..++++++.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~-l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAME-ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH-HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh-hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 34455667777888888888888771 112 23 38888889999999999999999999886
Q ss_pred -CCCCCccHH----HHHHHHhHhcCCHHHHHHHHHhc
Q 007329 529 -GVAFDGFLP----NALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 529 -~~~p~~~~~----~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
.+. +...| .....++...|++++|++.|+++
T Consensus 93 ~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kA 128 (159)
T 2hr2_A 93 LNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKV 128 (159)
T ss_dssp TTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHH
Confidence 543 45677 78899999999999999999887
No 193
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.74 E-value=0.00024 Score=55.28 Aligned_cols=78 Identities=12% Similarity=-0.058 Sum_probs=59.6
Q ss_pred hHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 482 FEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 482 ~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
++|++.|++.....+.+...+..+...+...|++++|...++++.+..+. +...+..+..+|...|++++|...|+++
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35677777777444556777888888888888888888888888877654 4567777888888888888888888776
No 194
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.66 E-value=0.00013 Score=60.59 Aligned_cols=126 Identities=14% Similarity=0.035 Sum_probs=70.0
Q ss_pred hHHHHHHHHhCCChHHHHHHHHHHhhcCCC-CC----hhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCc-----chhH
Q 007329 63 PNSRLNELCLNGSLEQALKYLDSMQELNIC-VD----EDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHL-----SVRL 132 (608)
Q Consensus 63 ~~~ll~~~~~~~~~~~A~~~~~~~~~~g~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~ 132 (608)
+..+...+...|++++|+..+++..+.... ++ ...+..+...+...|++++|...++...+..... ....
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 455666777888888888888877553211 11 1245555566667777777777777665543211 1234
Q ss_pred HhHHHHHhhhcCChhhHHHHHcccCC-----CC----cchHHHHHHHHHhcCChhHHHHHHHHHH
Q 007329 133 GNAFLSMFVKFGDLGHAWYVFGKMCD-----RD----LFSWNVLIGGYAKAGFFDEALSLYQRMF 188 (608)
Q Consensus 133 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~ 188 (608)
+..+...+...|++++|...+++..+ .+ ..++..+...+...|++++|.+.+++..
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 44555555566666666666555421 11 1234444555555555555555555543
No 195
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.61 E-value=3.4e-05 Score=59.59 Aligned_cols=85 Identities=6% Similarity=-0.105 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc---CCC-------HHHHHH
Q 007329 500 VTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN---ERD-------VSAWNI 569 (608)
Q Consensus 500 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~-------~~~~~~ 569 (608)
..+..+...+...|++++|.+.++++.+..+. +...+..+..+|.+.|++++|.+.++++ .|+ ...+..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 34445555555556666666666655555433 4445555556666666666666666555 332 334444
Q ss_pred HHHHHHhcCCHHHHHH
Q 007329 570 LLTGYAERGQGALAEE 585 (608)
Q Consensus 570 l~~~~~~~g~~~~A~~ 585 (608)
+..++...|+.+.|.+
T Consensus 84 ~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHhHhhhHh
Confidence 4445555554444443
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.60 E-value=0.00029 Score=54.79 Aligned_cols=77 Identities=17% Similarity=0.161 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007329 516 MCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKMI 591 (608)
Q Consensus 516 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 591 (608)
+.|.+.++++.+..+. +...+..+...|...|++++|...++++ +.+...|..+...|...|++++|...|++..
T Consensus 2 ~~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 2 QAITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CCHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3567788888876654 6778889999999999999999999998 4568899999999999999999999999998
Q ss_pred Hc
Q 007329 592 DS 593 (608)
Q Consensus 592 ~~ 593 (608)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 74
No 197
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.60 E-value=9.5e-05 Score=70.50 Aligned_cols=146 Identities=11% Similarity=-0.024 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhC
Q 007329 399 EITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLN 478 (608)
Q Consensus 399 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 478 (608)
...+..+...+.+.|+++.|...|+...+.. |+.. .+...|+.+++...+. ...|..+..+|.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~-------~~~~~~~~~~~~~~l~------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDF-------MFQLYGKYQDMALAVK------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHH-------HHTCCHHHHHHHHHHH------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccch-------hhhhcccHHHHHHHHH------HHHHHHHHHHHHHc
Confidence 4567777788889999999999999887654 2222 1223344444444332 23788889999999
Q ss_pred CCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHh-HhcCCHHHHHHHH
Q 007329 479 NRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMY-VRCGRMKPAWNQF 557 (608)
Q Consensus 479 ~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~A~~~~ 557 (608)
|++++|+..+++.+...+.+...|..+..++...|++++|...|+++.+..+. +...+..|.... ...+..+++.+.|
T Consensus 244 g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a~~~~ 322 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQKEMY 322 (338)
T ss_dssp TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998545567889999999999999999999999998876544 455555565553 3456777888888
Q ss_pred Hhc
Q 007329 558 NSN 560 (608)
Q Consensus 558 ~~~ 560 (608)
+++
T Consensus 323 ~~~ 325 (338)
T 2if4_A 323 KGI 325 (338)
T ss_dssp ---
T ss_pred HHh
Confidence 887
No 198
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.59 E-value=3.8e-05 Score=59.34 Aligned_cols=95 Identities=13% Similarity=0.012 Sum_probs=69.0
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCC-C----ccHHHHH
Q 007329 466 ISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAF-D----GFLPNAL 540 (608)
Q Consensus 466 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~----~~~~~~l 540 (608)
..|..+...+...|++++|++.|++.+...+.+...+..+..++...|++++|.+.++++.+..+.. + ...+..+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 84 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRL 84 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 4566677788888888888888888885455577788888888888899999999888888765442 1 3445556
Q ss_pred HHHhHhcCCHHHHHHHHHhc
Q 007329 541 LDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 541 ~~~~~~~g~~~~A~~~~~~~ 560 (608)
..++...|++++|.+.++++
T Consensus 85 ~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 85 ELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHhHhhhHhHHHHh
Confidence 66677777776666555544
No 199
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.53 E-value=0.0019 Score=66.06 Aligned_cols=149 Identities=11% Similarity=-0.066 Sum_probs=116.7
Q ss_pred CHHHHHHHHccCCC--C-CcccHHHHHHHHHhCCC----------chHHHHHHHHhHhCCCCCHHHHHHHHHHHhccC--
Q 007329 449 CIDKALEVFHQIPD--K-NVISWTSIILGLRLNNR----------SFEALIFFRKMMLNLKPNSVTLVSILSACARIG-- 513 (608)
Q Consensus 449 ~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~----------~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~-- 513 (608)
.-++|++.++++.. | +...|+.--..+...|+ +++++++++++....+-+..+|..-..++.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccc
Confidence 34456666666653 2 33456655555555555 789999999999666778889998888888889
Q ss_pred cHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcC-CHHHHHHHHHhc----CCCHHHHHHHHHHHHhc-----------
Q 007329 514 ALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCG-RMKPAWNQFNSN----ERDVSAWNILLTGYAER----------- 577 (608)
Q Consensus 514 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~----------- 577 (608)
+++++++.++++.+..+. +...|+.-..++.+.| .++++.+.++++ ..|...|+.....+.+.
T Consensus 124 ~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 124 NWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred cHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence 679999999999998877 7888888888888889 899999999988 55788999888777663
Q ss_pred ---CCHHHHHHHHHHHHHcCCCCCch
Q 007329 578 ---GQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 578 ---g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
+.++++.+.+++.+.. .|++.
T Consensus 203 ~~~~~~~eel~~~~~ai~~--~P~~~ 226 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFT--DPNDQ 226 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHH--CSSCS
T ss_pred ccHHHHHHHHHHHHHHHhh--CCCCc
Confidence 5679999999999875 67654
No 200
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.50 E-value=0.0011 Score=67.74 Aligned_cols=132 Identities=9% Similarity=-0.062 Sum_probs=77.5
Q ss_pred HHHHHHHHccCCC---CCcccHHHHHHHHHhCC--CchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccC-cHHHHHHHHH
Q 007329 450 IDKALEVFHQIPD---KNVISWTSIILGLRLNN--RSFEALIFFRKMMLNLKPNSVTLVSILSACARIG-ALMCGKEIHA 523 (608)
Q Consensus 450 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~--~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~ 523 (608)
++++++.++.+.+ ++...|+.-...+.+.+ +++++++.++++.+..+-|...|+.-..++.+.| .++++.+.++
T Consensus 89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~ 168 (567)
T 1dce_A 89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 168 (567)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHH
Confidence 4555555554442 23345555555555555 4466666666666444445666666555555556 5666666666
Q ss_pred HHHHhCCCCCccHHHHHHHHhHhc--------------CCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHH
Q 007329 524 HALRIGVAFDGFLPNALLDMYVRC--------------GRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQGAL 582 (608)
Q Consensus 524 ~~~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~ 582 (608)
++++..+. +...|+....++.+. +.+++|.+.++++ +.|...|.-+...+...|+.++
T Consensus 169 ~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 169 SLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp TTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHCCC-CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 66665554 555555555554442 4567777777766 4467777777777766666433
No 201
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.49 E-value=0.00018 Score=58.56 Aligned_cols=48 Identities=19% Similarity=0.239 Sum_probs=24.6
Q ss_pred HHHHHHHHhc----CCCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHcCCCCCch
Q 007329 551 KPAWNQFNSN----ERDVSAWNILLTGYAERG-----------QGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 551 ~~A~~~~~~~----~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
++|+..|+++ +.+..+|..+..+|...| ++++|++.|++.++. .|+..
T Consensus 63 ~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~ 125 (158)
T 1zu2_A 63 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNT 125 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCH
Confidence 3555555554 223445555555555442 556666666666553 55443
No 202
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.47 E-value=0.00076 Score=50.79 Aligned_cols=63 Identities=10% Similarity=0.021 Sum_probs=45.9
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 497 PNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 497 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
-+...+..+..++...|++++|...++++++..+. +...|..+..+|.+.|++++|.+.+++.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35566777777777777777777777777776655 5566777777788888888887777665
No 203
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.46 E-value=0.00026 Score=57.60 Aligned_cols=111 Identities=10% Similarity=-0.075 Sum_probs=81.5
Q ss_pred HhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcH----------HHHHHHHHHHHHhCCCCCccHHHHHHHHhH
Q 007329 476 RLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGAL----------MCGKEIHAHALRIGVAFDGFLPNALLDMYV 545 (608)
Q Consensus 476 ~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~----------~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 545 (608)
.+.+++++|++.+++..+.-+.+...|..+..++...+++ ++|+..|+++++.++. +...|..+..+|.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHH
Confidence 3455678888888888855566778888888888777654 5999999999988776 6778888999998
Q ss_pred hcC-----------CHHHHHHHHHhc---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 546 RCG-----------RMKPAWNQFNSN---ERDVSAWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 546 ~~g-----------~~~~A~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
..| ++++|.+.|+++ .|+...|...+... ++|.++.-.....
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~------~ka~el~~~~~~~ 147 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT------AKAPQLHAEAYKQ 147 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH------HTHHHHHHHHHHS
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH------HhCHhccCccccc
Confidence 774 899999999988 77766665444433 3355555555444
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.45 E-value=0.00095 Score=48.91 Aligned_cols=74 Identities=15% Similarity=0.069 Sum_probs=36.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHH
Q 007329 501 TLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYA 575 (608)
Q Consensus 501 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~ 575 (608)
.+..+...+...|++++|...++++.+..+. +...+..+..+|.+.|++++|.+.++++ +.+...+..+...+.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 3444444555555555555555555544332 3344445555555555555555555554 223444444444443
No 205
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.43 E-value=0.00055 Score=68.21 Aligned_cols=131 Identities=4% Similarity=-0.151 Sum_probs=70.7
Q ss_pred HHcCCCchHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHh-----CC--CCchhHHHH
Q 007329 374 YEGSVLPDKAVETYQMMEAE---GSMPD----EITIASVLSACACLGNLDLGIKLHQLAMRT-----GL--ISYIIIANT 439 (608)
Q Consensus 374 ~~~~~~~~~a~~~~~~m~~~---g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~--~~~~~~~~~ 439 (608)
+...|++++|+.++++..+. -+.|+ ..+++.|...|...|++++|+.++++..+. |. +....+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44566777777766665432 11222 345666666777777777777766654431 11 111233444
Q ss_pred HHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhH-hCCCCCHHHHHHHHHHHhccCcHHHH
Q 007329 440 LIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMM-LNLKPNSVTLVSILSACARIGALMCG 518 (608)
Q Consensus 440 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~-~~~~p~~~~~~~ll~~~~~~~~~~~a 518 (608)
|...|...|++++|..++++ |+++++... ...+....+...+..++...+.+++|
T Consensus 399 La~~~~~~G~~~eA~~~~~~------------------------Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~a 454 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICK------------------------AYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQN 454 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHH------------------------HHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHH------------------------HHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555554432 333333333 11111233455666677778888888
Q ss_pred HHHHHHHHHh
Q 007329 519 KEIHAHALRI 528 (608)
Q Consensus 519 ~~~~~~~~~~ 528 (608)
+.++.++++.
T Consensus 455 e~~~~~~~~~ 464 (490)
T 3n71_A 455 EFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887753
No 206
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.40 E-value=2.5e-05 Score=74.35 Aligned_cols=236 Identities=11% Similarity=0.089 Sum_probs=127.6
Q ss_pred hHHhHHHHHhhhcCChhhHHHHHcccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCC
Q 007329 131 RLGNAFLSMFVKFGDLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGV 210 (608)
Q Consensus 131 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~ 210 (608)
.+|..|..+..+.|++.+|++-|=+. .|+..|..+|....+.|.+++-++.+...++. .-+...=+.++-+|++.
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~---~ke~~IDteLi~ayAk~ 129 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK---ARESYVETELIFALAKT 129 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT---CCSTTTTHHHHHHHHTS
T ss_pred cHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---hcccccHHHHHHHHHhh
Confidence 34445555555555555444433222 33444555555555555555555555444332 12222333455555555
Q ss_pred CChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCC------------------------CCHhHH
Q 007329 211 PDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPK------------------------RDRISW 266 (608)
Q Consensus 211 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------------------~~~~~~ 266 (608)
+++.+.++++. .|+..-...+.+-|...|.++.|.-+|..+.. .++.+|
T Consensus 130 ~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktW 202 (624)
T 3lvg_A 130 NRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTW 202 (624)
T ss_dssp CSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSH
T ss_pred CcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHH
Confidence 55444333332 34443444444555555555555555544431 267789
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhc
Q 007329 267 NAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSF 346 (608)
Q Consensus 267 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 346 (608)
-.+-.+|...+.+.-|.-.--.+.-. | .-...++..|-..|.+++.+.+++...... .....+|+-|.-.|++-
T Consensus 203 KeV~~ACvd~~EfrLAqicGLniIvh---a--deL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 203 KEVCFACVDGKEFRLAQMCGLHIVVH---A--DELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF 276 (624)
T ss_dssp HHHTHHHHHSCTTTTTTHHHHHHHCC---S--SCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS
T ss_pred HHHHHHHhCchHHHHHHHhcchhccc---H--HHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc
Confidence 88888998888887765544444321 1 122334556777788888777777655221 34556777777777765
Q ss_pred CChHHHHHHHhhCCC----C-------ChhhHHHHHHHHHcCCCchHHHH
Q 007329 347 GNREEGEKVFSRMES----K-------DVVSWTTMISCYEGSVLPDKAVE 385 (608)
Q Consensus 347 ~~~~~a~~~~~~~~~----~-------~~~~~~~li~~~~~~~~~~~a~~ 385 (608)
++++..+-++..-. | ....|..++-.|++-.+++.|..
T Consensus 277 -~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 277 -KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp -CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred -CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 45555555554432 2 33457777777777777776653
No 207
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.38 E-value=0.0012 Score=48.36 Aligned_cols=82 Identities=15% Similarity=0.089 Sum_probs=60.2
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhH
Q 007329 466 ISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYV 545 (608)
Q Consensus 466 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 545 (608)
..|..+...+...|++++|+..|++.....+.+...+..+..++...|++++|...++++.+..+. +...+..+..++.
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~ 88 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHH
Confidence 456667777788888888888888887444556777888888888888888888888888877554 4556666666665
Q ss_pred hcC
Q 007329 546 RCG 548 (608)
Q Consensus 546 ~~g 548 (608)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 543
No 208
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.27 E-value=0.0012 Score=63.10 Aligned_cols=315 Identities=9% Similarity=0.048 Sum_probs=168.4
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHHH
Q 007329 159 RDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNAL 238 (608)
Q Consensus 159 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 238 (608)
.++.+|-.+-.+|...+.+.-|.-.--.+. +.|| ....++..|-..|.+++...+++.-.... .....+|+-|
T Consensus 197 ns~ktWKeV~~ACvd~~EfrLAqicGLniI----vhad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTEL 269 (624)
T 3lvg_A 197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIV----VHAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTEL 269 (624)
T ss_dssp CSSCSHHHHTHHHHHSCTTTTTTHHHHHHH----CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHH
T ss_pred CChhHHHHHHHHHhCchHHHHHHHhcchhc----ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHH
Confidence 366788888888888888877765555444 2333 33456677888888888888888766321 3466788888
Q ss_pred HHHHHhcCCHHHHHHHHccCCCC-----------CHhHHHHHHHHHHhcCChhHHHHHHHHHHH----C-------CCCC
Q 007329 239 ITMYVKCGDLVRARLVFDGMPKR-----------DRISWNAMISGYFENGEYMKGLMLFIMMRE----V-------LVDP 296 (608)
Q Consensus 239 i~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~-------~~~p 296 (608)
.-.|++- +.++..+.++..-.+ ....|..++-.|++-.+++.|....-+-.. . .-..
T Consensus 270 aILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~KVa 348 (624)
T 3lvg_A 270 AILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVA 348 (624)
T ss_dssp HHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGGCS
T ss_pred HHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHHcc
Confidence 8888775 455555555443322 455788899999988888877543211000 0 0123
Q ss_pred ChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCCCChhhHHH-HHHHHH
Q 007329 297 DFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVVSWTT-MISCYE 375 (608)
Q Consensus 297 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-li~~~~ 375 (608)
|...|-..|..|.... +....+++..+ .|.. -.+..++.+.+.|++.-...++..+...|....|. +-..|.
T Consensus 349 N~EiyYKAi~FYL~e~-P~lL~DLL~vL-----~prl-Dh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~I 421 (624)
T 3lvg_A 349 NVELYYRAIQFYLEFK-PLLLNDLLMVL-----SPRL-DHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFI 421 (624)
T ss_dssp CSHHHHHHHHHHTTSC-CTTSHHHHHHH-----CTTC-CSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-hHHHHHHHHhc-----cccC-ChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 4444444444443321 11111111111 0100 01123334444444444444444444444433332 333444
Q ss_pred cCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHH
Q 007329 376 GSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALE 455 (608)
Q Consensus 376 ~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 455 (608)
...|++ ++..-+..|-+-..+..|.++- + ..-...-..-...|.+.++++++.+
T Consensus 422 EEEDy~-------------------~LR~SId~ydNFD~i~LA~rLE----k---HeL~eFRrIAA~LYkkn~rw~qsi~ 475 (624)
T 3lvg_A 422 TEEDYQ-------------------ALRTSIDAYDNFDNISLAQRLE----K---HELIEFRRIAAYLFKGNNRWKQSVE 475 (624)
T ss_dssp HTTCCH-------------------HHHHTTSSCCCSCTTHHHHHHH----T---CSSHHHHHHHHHHHHTTCHHHHHSS
T ss_pred hhhhHH-------------------HHHHHHHHhccccHHHHHHHHh----h---CchHHHHHHHHHHHHhcccHHHHHH
Confidence 444433 3333333333444444444332 1 1223333445566888888988887
Q ss_pred HHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 007329 456 VFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEI 521 (608)
Q Consensus 456 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 521 (608)
+.++=. .|--.|......|+.+-|.++++-.++. -+...|...+..|...=+++-++++
T Consensus 476 l~KkDk-----lykDAietAa~S~~~elaeeLL~yFv~~--g~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 476 LCKKDS-----LYKDAMQYASESKDTELAEELLQWFLQE--EKRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp CSSTTC-----CTTGGGTTTTTCCCTTHHHHHHHHHHHH--CSTHHHHHHHHHTSSSSSCHHHHHH
T ss_pred HHHhcc-----cHHHHHHHHHHcCCHHHHHHHHHHHHHc--CchHHHHHHHHHHhhccChHHHHHH
Confidence 665422 2222344445567777777777776621 1335577777777777777766554
No 209
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.17 E-value=0.0043 Score=49.93 Aligned_cols=110 Identities=8% Similarity=-0.048 Sum_probs=65.0
Q ss_pred CChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHH
Q 007329 175 GFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVK----CGDLVR 250 (608)
Q Consensus 175 g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~ 250 (608)
+++++|+++|++..+.+ .|+.. +...+...+.+++|.++|+...+.| +...+..|...|.. .++.++
T Consensus 9 ~d~~~A~~~~~~aa~~g--~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN--EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT--CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC--CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 45677777777777655 33322 5555666666777777777777664 44555566666665 566666
Q ss_pred HHHHHccCCCC-CHhHHHHHHHHHHh----cCChhHHHHHHHHHHHCC
Q 007329 251 ARLVFDGMPKR-DRISWNAMISGYFE----NGEYMKGLMLFIMMREVL 293 (608)
Q Consensus 251 A~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~ 293 (608)
|.+.|++..+. ++..+..|...|.. .++.++|..+|++..+.|
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 66666554332 45555555555555 555555555555555443
No 210
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.13 E-value=0.0016 Score=49.02 Aligned_cols=61 Identities=18% Similarity=0.126 Sum_probs=54.9
Q ss_pred CccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 533 DGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 533 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
+...+..+..+|.+.|++++|.+.|+++ +.+...|..+..+|...|++++|.+.+++.++.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5667888999999999999999999998 446789999999999999999999999998764
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.94 E-value=0.0049 Score=60.25 Aligned_cols=57 Identities=16% Similarity=0.061 Sum_probs=34.5
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHHhc--------CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007329 536 LPNALLDMYVRCGRMKPAWNQFNSN--------ERD----VSAWNILLTGYAERGQGALAEEFFRKMID 592 (608)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 592 (608)
+++.|..+|...|++++|..+++++ .|+ ..+++.|...|...|++++|..++++.++
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 4455555566666666665555544 221 33566777777777777777777776643
No 212
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.89 E-value=0.021 Score=61.72 Aligned_cols=155 Identities=12% Similarity=0.163 Sum_probs=104.8
Q ss_pred HHHHhcCChhHHHH-HHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 007329 169 GGYAKAGFFDEALS-LYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGD 247 (608)
Q Consensus 169 ~~~~~~g~~~~a~~-~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 247 (608)
......+++++|.+ ++..+ ++......++..+.+.|..+.|.++.+.- ..-.......|+
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i-------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~------------~~~f~~~l~~~~ 667 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV-------EGKDSLTKIARFLEGQEYYEEALNISPDQ------------DQKFELALKVGQ 667 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC-------CCHHHHHHHHHHHHHTTCHHHHHHHCCCH------------HHHHHHHHHHTC
T ss_pred hHHHHhCCHHHHHHHHHhcC-------CchHHHHHHHHHHHhCCChHHheecCCCc------------chheehhhhcCC
Confidence 34456788888876 44221 11223366777777888888887765321 111344567899
Q ss_pred HHHHHHHHccCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHh
Q 007329 248 LVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKM 327 (608)
Q Consensus 248 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 327 (608)
+++|.++.+.+. +...|..+...+.+.++++.|.+.|.++.+ |..+...+...|+.+...++-+.....
T Consensus 668 ~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~ 736 (814)
T 3mkq_A 668 LTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT 736 (814)
T ss_dssp HHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc
Confidence 999999988774 668999999999999999999999998754 445555556677777766666655554
Q ss_pred CCCCCcccchHHHHHHHhcCChHHHHHHHhhC
Q 007329 328 GFSDDVSVCNPLIKMYLSFGNREEGEKVFSRM 359 (608)
Q Consensus 328 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 359 (608)
| -++....+|.+.|++++|.+++.++
T Consensus 737 ~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 737 G------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp T------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred C------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4 2345555667777777776665443
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.75 E-value=0.062 Score=50.38 Aligned_cols=61 Identities=11% Similarity=0.117 Sum_probs=34.0
Q ss_pred CccHHHHHHHHhHhcCCHHHHHHHHHhc---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 533 DGFLPNALLDMYVRCGRMKPAWNQFNSN---ERDVSAWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 533 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
++.+|..+...+...|++++|...++++ .|+...|..+...+...|++++|.+.+++....
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 4444555544444556666666666555 555555555555555566666666666555553
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.69 E-value=0.014 Score=57.22 Aligned_cols=55 Identities=16% Similarity=0.166 Sum_probs=26.4
Q ss_pred HHHHHhCCCchHHHHHHHHhH---hC-CCCC----HHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 007329 472 ILGLRLNNRSFEALIFFRKMM---LN-LKPN----SVTLVSILSACARIGALMCGKEIHAHAL 526 (608)
Q Consensus 472 ~~~~~~~~~~~~A~~~~~~m~---~~-~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 526 (608)
+..+.+.|++++|+.++++.+ .. +.|+ ..+++.+..+|...|++++|+.++++++
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L 356 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTM 356 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 334445566666666666555 11 2222 1234444455555555555555544443
No 215
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.65 E-value=0.07 Score=57.53 Aligned_cols=156 Identities=17% Similarity=0.230 Sum_probs=106.4
Q ss_pred HHHHHhCCChHHHHH-HHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhhcCC
Q 007329 67 LNELCLNGSLEQALK-YLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFGD 145 (608)
Q Consensus 67 l~~~~~~~~~~~A~~-~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 145 (608)
.......+++++|.+ ++..+. +......+++.+...|.++.|.++.+. + ..-.......|+
T Consensus 606 ~~~~~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~-----~~~f~~~l~~~~ 667 (814)
T 3mkq_A 606 FQTLTLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPD-------Q-----DQKFELALKVGQ 667 (814)
T ss_dssp HHHHHHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCC-------H-----HHHHHHHHHHTC
T ss_pred HhHHHHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCC-------c-----chheehhhhcCC
Confidence 445567899999977 553221 123347777888888998888776421 1 112344567899
Q ss_pred hhhHHHHHcccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHH
Q 007329 146 LGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIR 225 (608)
Q Consensus 146 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 225 (608)
++.|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...++.+....
T Consensus 668 ~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d----------~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 668 LTLARDLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD----------LESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp HHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC----------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC----------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999998877 4567899999999999999999999998753 34455555557777766666555555
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHccC
Q 007329 226 FGYEADVDVVNALITMYVKCGDLVRARLVFDGM 258 (608)
Q Consensus 226 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 258 (608)
.| -++....+|.+.|++++|.+++.++
T Consensus 736 ~~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 736 TG------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp TT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred cC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 44 2234444566677777777665543
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.61 E-value=0.0071 Score=45.03 Aligned_cols=57 Identities=11% Similarity=0.008 Sum_probs=28.3
Q ss_pred HHHHhCCCchHHHHHHHHhHhCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhC
Q 007329 473 LGLRLNNRSFEALIFFRKMMLNLKPNSV-TLVSILSACARIGALMCGKEIHAHALRIG 529 (608)
Q Consensus 473 ~~~~~~~~~~~A~~~~~~m~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 529 (608)
..+.+.|++++|++.|++.....+.+.. .+..+..++...|++++|.+.++++.+..
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3444455555555555555522333344 45555555555555555555555555443
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.46 E-value=0.0081 Score=58.72 Aligned_cols=83 Identities=7% Similarity=0.021 Sum_probs=56.5
Q ss_pred CCCchHHHHHHHHhH----hCCCCC----HHHHHHHHHHHhccCcHHHHHHHHHHHHH-----hCCC-CC-ccHHHHHHH
Q 007329 478 NNRSFEALIFFRKMM----LNLKPN----SVTLVSILSACARIGALMCGKEIHAHALR-----IGVA-FD-GFLPNALLD 542 (608)
Q Consensus 478 ~~~~~~A~~~~~~m~----~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~-p~-~~~~~~l~~ 542 (608)
.|++++|+.++++.+ .-+.|+ ..+++.+..+|...|++++|+.+++++++ .|.. |+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 355666666666655 112332 34677888888888888888888887763 2322 22 345778888
Q ss_pred HhHhcCCHHHHHHHHHhc
Q 007329 543 MYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 543 ~~~~~g~~~~A~~~~~~~ 560 (608)
.|...|++++|..+++++
T Consensus 391 ~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHH
Confidence 899999999998888775
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.40 E-value=0.023 Score=55.67 Aligned_cols=86 Identities=13% Similarity=0.033 Sum_probs=61.3
Q ss_pred HHHhHhcCCHHHHHHHHccCCC-------C-C---cccHHHHHHHHHhCCCchHHHHHHHHhH----hCCCCC----HHH
Q 007329 441 IDMYSKCKCIDKALEVFHQIPD-------K-N---VISWTSIILGLRLNNRSFEALIFFRKMM----LNLKPN----SVT 501 (608)
Q Consensus 441 i~~~~~~g~~~~A~~~~~~~~~-------~-~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~----~~~~p~----~~~ 501 (608)
+.-+.+.|++++|+.++++..+ + + ..+++.+...|...|++++|+.++++.+ .-..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 4556678899999988876542 1 2 2478888999999999999999999887 113333 335
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHH
Q 007329 502 LVSILSACARIGALMCGKEIHAHAL 526 (608)
Q Consensus 502 ~~~ll~~~~~~~~~~~a~~~~~~~~ 526 (608)
++.|...|...|++++|+.+++++.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 6667777777777777777776655
No 219
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.33 E-value=0.02 Score=45.98 Aligned_cols=77 Identities=12% Similarity=-0.125 Sum_probs=37.1
Q ss_pred HHHHHHHhHhCCCCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHHhC-CCCCccHHHHHHHHhHhcCCHHHHHHHHHh
Q 007329 484 ALIFFRKMMLNLKPNSVTLVSILSACARIG---ALMCGKEIHAHALRIG-VAFDGFLPNALLDMYVRCGRMKPAWNQFNS 559 (608)
Q Consensus 484 A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 559 (608)
+.+-|.+....-.++..+.-.+.+++++.+ +.+++..+++...+.+ +.-....+-.|.-+|.+.|++++|.+.++.
T Consensus 17 ~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~ 96 (152)
T 1pc2_A 17 FEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRG 96 (152)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 333444433223355555555555555555 4445666666555543 100122333344455555555555555555
Q ss_pred c
Q 007329 560 N 560 (608)
Q Consensus 560 ~ 560 (608)
+
T Consensus 97 l 97 (152)
T 1pc2_A 97 L 97 (152)
T ss_dssp H
T ss_pred H
Confidence 4
No 220
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.30 E-value=0.015 Score=43.25 Aligned_cols=79 Identities=11% Similarity=0.040 Sum_probs=56.2
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhCCCCCcc-HHHHHHHHhHhcCCHHHHHHHHHhc---CC-CHHHHHHHHHHHHhcCC
Q 007329 505 ILSACARIGALMCGKEIHAHALRIGVAFDGF-LPNALLDMYVRCGRMKPAWNQFNSN---ER-DVSAWNILLTGYAERGQ 579 (608)
Q Consensus 505 ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~---~~-~~~~~~~l~~~~~~~g~ 579 (608)
....+...|++++|.+.++++.+..+. +.. .+..+..+|...|++++|.+.|+++ .| +...+.. +.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~ 76 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KM 76 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HH
Confidence 455677888999999999988887654 556 7778888888999999999988887 44 3334321 45
Q ss_pred HHHHHHHHHHHHH
Q 007329 580 GALAEEFFRKMID 592 (608)
Q Consensus 580 ~~~A~~~~~~m~~ 592 (608)
+.++...+++...
T Consensus 77 ~~~a~~~~~~~~~ 89 (99)
T 2kc7_A 77 VMDILNFYNKDMY 89 (99)
T ss_dssp HHHHHHHHCCTTH
T ss_pred HHHHHHHHHHHhc
Confidence 5566666655543
No 221
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.20 E-value=0.019 Score=42.12 Aligned_cols=29 Identities=10% Similarity=-0.026 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007329 564 VSAWNILLTGYAERGQGALAEEFFRKMID 592 (608)
Q Consensus 564 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 592 (608)
+..+..+...+...|++++|++.|+++.+
T Consensus 43 ~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 43 EAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33333444444444444444444444443
No 222
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.13 E-value=0.033 Score=40.83 Aligned_cols=64 Identities=8% Similarity=-0.068 Sum_probs=55.4
Q ss_pred CCCHHHHHHHHHHHhccCc---HHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 496 KPNSVTLVSILSACARIGA---LMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 496 ~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
+.|...+..+..++...++ .++|..+++++++..+. ++.....+...+.+.|++++|.+.|+++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~ 69 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLL 69 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5677788888888865544 79999999999998777 7788888999999999999999999998
No 223
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.08 E-value=0.088 Score=49.38 Aligned_cols=73 Identities=10% Similarity=-0.010 Sum_probs=55.0
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc---CCCHHHHH
Q 007329 494 NLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN---ERDVSAWN 568 (608)
Q Consensus 494 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~ 568 (608)
..+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.++++ .|...+|.
T Consensus 272 ~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~ 347 (372)
T 3ly7_A 272 ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLY 347 (372)
T ss_dssp GGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHH
T ss_pred cCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHH
Confidence 345677777777777777788888888888888876 56666667778888888888888888777 67666654
No 224
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.90 E-value=2.3 Score=45.30 Aligned_cols=263 Identities=8% Similarity=-0.063 Sum_probs=136.4
Q ss_pred HHhhcCChhhHHHHHHHHHHhCCCCC--cccchHHHHHHHhcCChHHHHHHHhhCCC-CC---------hh-hHHHHHHH
Q 007329 307 ASELVGDEKLGREVHGYVIKMGFSDD--VSVCNPLIKMYLSFGNREEGEKVFSRMES-KD---------VV-SWTTMISC 373 (608)
Q Consensus 307 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~---------~~-~~~~li~~ 373 (608)
+....|+.+++..+++.....+-..+ ...-..+.-+...+|..+++..++..... ++ .. .-.++.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 45567788888777765433110111 12223344445566666667776655432 22 11 12222224
Q ss_pred HHcCCC-chHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH--hHhcC
Q 007329 374 YEGSVL-PDKAVETYQMMEAEGSMPDEITIA--SVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDM--YSKCK 448 (608)
Q Consensus 374 ~~~~~~-~~~a~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g 448 (608)
++-.|. -+++.+.+..+....- +...... .+...+...|+.+....++..+.+.. +..+...+..+ +.-.|
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYG 538 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTT
T ss_pred HHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCC
Confidence 444443 2567777777765421 1111122 22333556778888888887766532 22333333333 33567
Q ss_pred CHHHHHHHHccCC-CCCcc-cHH---HHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 007329 449 CIDKALEVFHQIP-DKNVI-SWT---SIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHA 523 (608)
Q Consensus 449 ~~~~A~~~~~~~~-~~~~~-~~~---~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 523 (608)
+.+.+..+++.+. ..++. -|. ++.-+|+..|+.....+++..+......+......+.-++...|+.+.+.++++
T Consensus 539 ~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 539 RQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp CGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 7777666666554 23332 232 234566777887666668888774433344444444445556677666777776
Q ss_pred HHHHhCCCCCccHHHHHHHHhHhcCCH-HHHHHHHHhc--CCCHHHHHHHHHHH
Q 007329 524 HALRIGVAFDGFLPNALLDMYVRCGRM-KPAWNQFNSN--ERDVSAWNILLTGY 574 (608)
Q Consensus 524 ~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~--~~~~~~~~~l~~~~ 574 (608)
.+.+.+ .|....-..+.-+....|.. .+|.+.+..+ .+|..+-...+-++
T Consensus 619 ~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 619 LLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIAL 671 (963)
T ss_dssp TGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 555433 33443333444444444443 6788888888 55555443333333
No 225
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.77 E-value=0.18 Score=41.51 Aligned_cols=103 Identities=14% Similarity=0.168 Sum_probs=66.7
Q ss_pred HHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHH
Q 007329 242 YVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVH 321 (608)
Q Consensus 242 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 321 (608)
....|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|.+..+ +..+.-.|...|+.+...++-
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence 35667777777776665 3566777888877888888877777776543 344444555566666666555
Q ss_pred HHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCC
Q 007329 322 GYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMES 361 (608)
Q Consensus 322 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 361 (608)
+.....| -++.....+...|+++++.++|.+...
T Consensus 84 ~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r 117 (177)
T 3mkq_B 84 NIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS 117 (177)
T ss_dssp HHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred HHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC
Confidence 5554444 245555666677777777777665544
No 226
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.69 E-value=0.29 Score=37.75 Aligned_cols=140 Identities=11% Similarity=-0.016 Sum_probs=91.9
Q ss_pred HcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHH
Q 007329 375 EGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKAL 454 (608)
Q Consensus 375 ~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 454 (608)
.-.|..++..++..+.... .+..-|+.+|--....-+-+-..++++.+-+ -.| ...+|++....
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFD----------is~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFD----------LDKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSC----------GGGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh---hcC----------cHhhhcHHHHH
Confidence 3466777777777776654 2555666666555555555555555544322 111 12355555555
Q ss_pred HHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCC
Q 007329 455 EVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVA 531 (608)
Q Consensus 455 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 531 (608)
..+-.+-. +..-....+..+..+|+-++-.+++..+....+|++.....+..||.+.|+..++.+++.++-+.|++
T Consensus 82 ~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 82 ECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 55544432 22334556778888898888888888876567888888888999999999999999999998888865
No 227
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.67 E-value=0.38 Score=43.24 Aligned_cols=114 Identities=11% Similarity=0.032 Sum_probs=68.2
Q ss_pred hcCCHHHHHHHHccCCCCCc--ccHHHHHHH-HHhC--CC------chHHHHHHHHhHhCCCCC---HHHHHHHHHHHhc
Q 007329 446 KCKCIDKALEVFHQIPDKNV--ISWTSIILG-LRLN--NR------SFEALIFFRKMMLNLKPN---SVTLVSILSACAR 511 (608)
Q Consensus 446 ~~g~~~~A~~~~~~~~~~~~--~~~~~l~~~-~~~~--~~------~~~A~~~~~~m~~~~~p~---~~~~~~ll~~~~~ 511 (608)
+.++..+-.+.+.++...++ ..|..++.+ +... |+ ...|...+++.+ .+.|+ ...|..+...|..
T Consensus 133 ~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAl-eLDP~~~~GsA~~~LG~lY~~ 211 (301)
T 3u64_A 133 FSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERAC-DLWPSYQEGAVWNVLTKFYAA 211 (301)
T ss_dssp TSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHH-HHCTTHHHHHHHHHHHHHHHH
T ss_pred HhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHH-HhCCCcccCHHHHHHHHHHHh
Confidence 34555555666666654433 456655543 3332 32 234455555555 34454 4466666666666
Q ss_pred c-----CcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhc-CCHHHHHHHHHhc
Q 007329 512 I-----GALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRC-GRMKPAWNQFNSN 560 (608)
Q Consensus 512 ~-----~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~ 560 (608)
. |+.++|.+.|+++++.++.-+..++..+.+.|++. |+.++|.+.++++
T Consensus 212 vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 212 APESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp SCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred CCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3 77777777777777766643466666677777774 7777777777776
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.16 E-value=0.16 Score=40.77 Aligned_cols=85 Identities=9% Similarity=-0.018 Sum_probs=66.6
Q ss_pred CcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcC---CHHHHHHHHHhc---C-C--CHHHHHHHHHHHHhcCCHHHH
Q 007329 513 GALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCG---RMKPAWNQFNSN---E-R--DVSAWNILLTGYAERGQGALA 583 (608)
Q Consensus 513 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~---~-~--~~~~~~~l~~~~~~~g~~~~A 583 (608)
+....+.+-|.+..+.+. ++..+.-.+..++++.+ +++++..++++. . | +...+..|.-+|.+.|++++|
T Consensus 12 ~~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 445667777777776665 57777777888899888 677999999888 3 4 355677788888999999999
Q ss_pred HHHHHHHHHcCCCCCch
Q 007329 584 EEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 584 ~~~~~~m~~~g~~p~~~ 600 (608)
.++++++++. +|++.
T Consensus 91 ~~y~~~lL~i--eP~n~ 105 (152)
T 1pc2_A 91 LKYVRGLLQT--EPQNN 105 (152)
T ss_dssp HHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHhc--CCCCH
Confidence 9999999985 88776
No 229
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.05 E-value=0.8 Score=37.73 Aligned_cols=105 Identities=14% Similarity=0.103 Sum_probs=69.1
Q ss_pred HHHhhhcCChhhHHHHHcccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhH
Q 007329 137 LSMFVKFGDLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRG 216 (608)
Q Consensus 137 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 216 (608)
.......|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+..
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCHHHH
Confidence 34455778888888887766 4566788888888888888888888887642 33444445556666665
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCC
Q 007329 217 KEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMP 259 (608)
Q Consensus 217 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 259 (608)
.++-+.....| -++.....+.-.|+++++.++|.+..
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 55555544444 23444555566777777777766543
No 230
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.87 E-value=0.14 Score=38.32 Aligned_cols=63 Identities=10% Similarity=-0.118 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhC------CCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 498 NSVTLVSILSACARIGALMCGKEIHAHALRIG------VAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 498 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
+..-+..+...+...|+++.|...++.+.+.. -.+...++..|..+|.+.|++++|...++++
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~a 72 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKL 72 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 44556677888888899999998888877542 1124566777888888888888888888877
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.87 E-value=0.42 Score=37.83 Aligned_cols=98 Identities=15% Similarity=0.190 Sum_probs=56.2
Q ss_pred CCCcccHHHHHHHHHhCCCc------hHHHHHHHHhHhCCCCCHH----HHHHHHH---HHhccCcHHHHHHHHHHHHHh
Q 007329 462 DKNVISWTSIILGLRLNNRS------FEALIFFRKMMLNLKPNSV----TLVSILS---ACARIGALMCGKEIHAHALRI 528 (608)
Q Consensus 462 ~~~~~~~~~l~~~~~~~~~~------~~A~~~~~~m~~~~~p~~~----~~~~ll~---~~~~~~~~~~a~~~~~~~~~~ 528 (608)
..|..+|-..+..+-+.|++ ++..++|++....++|+.. .|..+.- .+...++.++|.++|+.+++.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 34666777777777777777 7777778777766666531 1111110 112236777777777777665
Q ss_pred CCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 529 GVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 529 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
.-+. ..+|-.....=.+.|+++.|.+++.+.
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~A 120 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKA 120 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 2222 334444444445666666666666554
No 232
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.82 E-value=0.21 Score=37.33 Aligned_cols=64 Identities=8% Similarity=-0.010 Sum_probs=42.9
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHh---C----CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCC
Q 007329 468 WTSIILGLRLNNRSFEALIFFRKMML---N----LKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVA 531 (608)
Q Consensus 468 ~~~l~~~~~~~~~~~~A~~~~~~m~~---~----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 531 (608)
...+...+.+.|+++.|...|+.... . -.+....+..+..++.+.|+++.|...++++.+..+.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 34566667777777777777777661 1 1234556777777777777777777777777765443
No 233
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.74 E-value=0.95 Score=34.99 Aligned_cols=140 Identities=11% Similarity=-0.037 Sum_probs=84.5
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHH
Q 007329 274 FENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGE 353 (608)
Q Consensus 274 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 353 (608)
.-.|..++..++..+.... .+..-|+-+|--....-+-+-..+.++. -|-..|.. .+|++....
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~---IGkiFDis----------~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDK---IGSYFDLD----------KCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHH---HGGGSCGG----------GCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHH---HhhhcCcH----------hhhcHHHHH
Confidence 3456677777777666553 2444555555444444443333333333 33222322 233444444
Q ss_pred HHHhhCCCCChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC
Q 007329 354 KVFSRMESKDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLI 431 (608)
Q Consensus 354 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 431 (608)
..+-.+.. +.......+..+..+|.-++-.+++..+.. +..|++.....+..+|.+.|+..++.+++.++-+.|++
T Consensus 82 ~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 82 ECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 44433332 233445566777888888888888888644 34678888888899999999999999999888888854
No 234
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.42 E-value=0.1 Score=46.92 Aligned_cols=87 Identities=14% Similarity=0.119 Sum_probs=70.7
Q ss_pred cHHHHHHHHHHHHHhCCCC-CccHHHHHHHHhHhc-----CCHHHHHHHHHhc---CC--CHHHHHHHHHHHHhc-CCHH
Q 007329 514 ALMCGKEIHAHALRIGVAF-DGFLPNALLDMYVRC-----GRMKPAWNQFNSN---ER--DVSAWNILLTGYAER-GQGA 581 (608)
Q Consensus 514 ~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~---~~--~~~~~~~l~~~~~~~-g~~~ 581 (608)
....|...++++++..+.- +...|..|+..|.+. |+.++|.+.|++. .| +..++......++.. |+.+
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 4567778888888865542 366888999999995 9999999999998 66 388888999999885 9999
Q ss_pred HHHHHHHHHHHcCCC--CCch
Q 007329 582 LAEEFFRKMIDSKGN--WRKL 600 (608)
Q Consensus 582 ~A~~~~~~m~~~g~~--p~~~ 600 (608)
+|.+.+++.++.... |+..
T Consensus 258 ~a~~~L~kAL~a~p~~~P~~~ 278 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPHNK 278 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSSCH
T ss_pred HHHHHHHHHHcCCCCCCCChh
Confidence 999999999997655 5543
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.32 E-value=0.33 Score=38.43 Aligned_cols=104 Identities=9% Similarity=-0.028 Sum_probs=76.7
Q ss_pred CCCHHHHHHHHHHHhccCcH------HHHHHHHHHHHHhCCCCC-ccHHHHHHHH------hHhcCCHHHHHHHHHhc--
Q 007329 496 KPNSVTLVSILSACARIGAL------MCGKEIHAHALRIGVAFD-GFLPNALLDM------YVRCGRMKPAWNQFNSN-- 560 (608)
Q Consensus 496 ~p~~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~~~~~p~-~~~~~~l~~~------~~~~g~~~~A~~~~~~~-- 560 (608)
+-|..+|-..+.-.-+.|+. ++.+++|+++... +.|+ ...|...|.. +...++.++|.++|+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34667777777777777888 8888899988864 3333 2222222221 23458999999999988
Q ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 561 --ERDVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 561 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
+.-...|......-.++|+...|..++.+.+..+.+|..+
T Consensus 89 ~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 89 NCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp HCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred HhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 4447788888888889999999999999999988777766
No 236
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.12 E-value=7.3 Score=41.59 Aligned_cols=249 Identities=14% Similarity=-0.037 Sum_probs=129.7
Q ss_pred HHHhcCChHHHHHHHhhCCC----CChh--hHHHHHHHHHcCCCchHHHHHHHHHHHCCC--CCC---H--HHHHHHHHH
Q 007329 342 MYLSFGNREEGEKVFSRMES----KDVV--SWTTMISCYEGSVLPDKAVETYQMMEAEGS--MPD---E--ITIASVLSA 408 (608)
Q Consensus 342 ~~~~~~~~~~a~~~~~~~~~----~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~p~---~--~t~~~ll~~ 408 (608)
+....|+.++++.+++.... .+.. .-..+.-+....|..+++..++.......- .-+ . ..-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 34566778888888887664 2222 222233355666666678887777654321 011 1 111222222
Q ss_pred HHccCC-hHHHHHHHHHHHHhCCCCch--hHHHHHHHHhHhcCCHHHHHHHHccCCC-CCc--ccHHHHHHHHHhCCCch
Q 007329 409 CACLGN-LDLGIKLHQLAMRTGLISYI--IIANTLIDMYSKCKCIDKALEVFHQIPD-KNV--ISWTSIILGLRLNNRSF 482 (608)
Q Consensus 409 ~~~~~~-~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~ 482 (608)
..-.|. -+++.+.+..+....- ... ..--+|...+.-.|+-+....++..+.+ .+. .-.-++.-++...|+.+
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG
T ss_pred HHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH
Confidence 332332 2344555555443221 111 1112334445566777777777665432 122 22233444566788888
Q ss_pred HHHHHHHHhHhCCCCCHHHH--HHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 483 EALIFFRKMMLNLKPNSVTL--VSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 483 ~A~~~~~~m~~~~~p~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
.+..+++.+.....|....- ..+.-+|+..|+.....+++..+.+.. ..+..-...+.-++...|+.+.+..+++.+
T Consensus 542 ~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L 620 (963)
T 4ady_A 542 LADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLL 620 (963)
T ss_dssp GGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHH
Confidence 88888888774333322222 234456777888877777888877532 223333333344455567766667777655
Q ss_pred --CCCHHHHHHHH--HHHHhcCCH-HHHHHHHHHHHH
Q 007329 561 --ERDVSAWNILL--TGYAERGQG-ALAEEFFRKMID 592 (608)
Q Consensus 561 --~~~~~~~~~l~--~~~~~~g~~-~~A~~~~~~m~~ 592 (608)
..|+.+-.... -+....|.. .+|.+++..+..
T Consensus 621 ~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 621 SKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp GGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 34544443333 333444443 667788888864
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.57 E-value=0.64 Score=35.75 Aligned_cols=81 Identities=9% Similarity=-0.078 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHH---HHHHHHhc-C---C--CHHHHHHHHHHHHhcCCHHHHHHHH
Q 007329 517 CGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKP---AWNQFNSN-E---R--DVSAWNILLTGYAERGQGALAEEFF 587 (608)
Q Consensus 517 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~---~--~~~~~~~l~~~~~~~g~~~~A~~~~ 587 (608)
.+.+-+......|. ++..+--.+..++.+..+..+ ++.+++.+ . | .......|.-++.+.|++++|.+++
T Consensus 19 ~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~ 97 (126)
T 1nzn_A 19 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 97 (126)
T ss_dssp HHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 33333443333333 333333344455555544333 55555555 1 1 1223344555666666666666666
Q ss_pred HHHHHcCCCCCch
Q 007329 588 RKMIDSKGNWRKL 600 (608)
Q Consensus 588 ~~m~~~g~~p~~~ 600 (608)
+.+++. .|+..
T Consensus 98 ~~lL~~--eP~n~ 108 (126)
T 1nzn_A 98 RGLLQT--EPQNN 108 (126)
T ss_dssp HHHHHH--CTTCH
T ss_pred HHHHHh--CCCCH
Confidence 666664 55543
No 238
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.61 E-value=3.1 Score=40.68 Aligned_cols=149 Identities=9% Similarity=-0.039 Sum_probs=72.4
Q ss_pred cCChhHHHHHHHHHHhcCC----CCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHh-CCCCchhHHHHHHHH----HHh
Q 007329 174 AGFFDEALSLYQRMFWVGG----VKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRF-GYEADVDVVNALITM----YVK 244 (608)
Q Consensus 174 ~g~~~~a~~~~~~m~~~~~----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~----~~~ 244 (608)
.|+++.|++-+..+.+... ..-.......++..|...|+++...+.+..+.+. |..+.. ...+++. ...
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhc
Confidence 3778888887776665321 2223344666777788888888777766655543 322221 2223222 222
Q ss_pred cCCH--HHHHHHHccCCC---C-------CHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh-----hHHHHHHHH
Q 007329 245 CGDL--VRARLVFDGMPK---R-------DRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDF-----MTLSSVISA 307 (608)
Q Consensus 245 ~g~~--~~A~~~~~~~~~---~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~~~~~ll~~ 307 (608)
.... +.-..+.+.+.. . .......|...|-..|++.+|.+++..+...-...+. ..+...++.
T Consensus 107 ~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 107 SKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp HCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 2222 222233333321 1 1112344566666677777777777666432111111 123333444
Q ss_pred HhhcCChhhHHHHHHHH
Q 007329 308 SELVGDEKLGREVHGYV 324 (608)
Q Consensus 308 ~~~~~~~~~a~~~~~~~ 324 (608)
|...+++..|..++..+
T Consensus 187 ~l~~~d~~~a~~~~~ki 203 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKI 203 (445)
T ss_dssp HHHHTCHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 44555555555544443
No 239
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=92.01 E-value=5 Score=36.72 Aligned_cols=145 Identities=14% Similarity=0.100 Sum_probs=88.3
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhH-----hCCCCCHHHHHHHHHHHh
Q 007329 436 IANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMM-----LNLKPNSVTLVSILSACA 510 (608)
Q Consensus 436 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~-----~~~~p~~~~~~~ll~~~~ 510 (608)
.|.++..-|.+.+++++|.+++.. -...+.+.|+...|-++-.-++ .+.+++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 345566667888888888887654 2345566777666665543333 467778777777776665
Q ss_pred ccCcHH-HHHHHHHHHH----HhCC--CCCccHHHHHHHHhHhcCCHHHHHHHHHhcC--------------------CC
Q 007329 511 RIGALM-CGKEIHAHAL----RIGV--AFDGFLPNALLDMYVRCGRMKPAWNQFNSNE--------------------RD 563 (608)
Q Consensus 511 ~~~~~~-~a~~~~~~~~----~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------------------~~ 563 (608)
....-+ .-.+++++++ +.|- .-|+.....+...|.+.|++.+|...|-... .+
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence 532111 2234444444 3322 2266778889999999999999988763221 12
Q ss_pred HHHHH----HHHHHHHhcCCHHHHHHHHHHHH
Q 007329 564 VSAWN----ILLTGYAERGQGALAEEFFRKMI 591 (608)
Q Consensus 564 ~~~~~----~l~~~~~~~g~~~~A~~~~~~m~ 591 (608)
+.... -.+--|.-.|+...|..+++...
T Consensus 184 ~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 184 DSTVAEFFSRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 22111 11223556788888888877664
No 240
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=91.71 E-value=7.7 Score=35.44 Aligned_cols=168 Identities=13% Similarity=0.061 Sum_probs=99.9
Q ss_pred HHhHHHHHhhhcCChhhHHHHHcccCCCCcchHHHHHHHHHhcCChhHHHHH----HHHHHhcCCCCCCcchHHHHHHHh
Q 007329 132 LGNAFLSMFVKFGDLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSL----YQRMFWVGGVKPDVYTFPCVLRTC 207 (608)
Q Consensus 132 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~----~~~m~~~~~~~p~~~~~~~ll~~~ 207 (608)
.|.++..-|.+.+++++|++++..- ...+.+.|+...|-++ ++...+.+ ++++......++..+
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~-~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAE-VKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTT-CCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHH
Confidence 4556667777888888888876543 2334556666555553 44444444 788887777777776
Q ss_pred cCCCChh-hHHHHHHHHH----HhCC--CCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhc---C
Q 007329 208 GGVPDLK-RGKEVHVHVI----RFGY--EADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFEN---G 277 (608)
Q Consensus 208 ~~~~~~~-~a~~~~~~~~----~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---~ 277 (608)
.....-+ .-.++++.++ +.|- .-++.....+...|.+.|++.+|...|-.-...|...+..++.-+... |
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCC
Confidence 5533211 2233444444 3332 236778888999999999999999877633323566666666555544 4
Q ss_pred ChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHH
Q 007329 278 EYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIK 326 (608)
Q Consensus 278 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 326 (608)
...++--++- ..+--+...++...|..+++...+
T Consensus 183 ~~~e~dlf~~---------------RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 183 EDSTVAEFFS---------------RLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CHHHHHHHHH---------------HHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred CcchHHHHHH---------------HHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4333221111 112234456788888888776543
No 241
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=91.40 E-value=0.57 Score=36.06 Aligned_cols=83 Identities=12% Similarity=-0.130 Sum_probs=56.2
Q ss_pred chHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHH---HHHHHHHHHHhC-CCCCccHHHHHHHHhHhcCCHHHHHHH
Q 007329 481 SFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMC---GKEIHAHALRIG-VAFDGFLPNALLDMYVRCGRMKPAWNQ 556 (608)
Q Consensus 481 ~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~ 556 (608)
...+.+-|.+....-.++..+--.+.+++.+..+... +..+++.+.+.+ +.-.....-.|.-++.+.|++++|.+.
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3344455555542234788888888888888876655 778888777654 111233344577788999999999999
Q ss_pred HHhc---CCC
Q 007329 557 FNSN---ERD 563 (608)
Q Consensus 557 ~~~~---~~~ 563 (608)
++.+ +|+
T Consensus 97 ~~~lL~~eP~ 106 (126)
T 1nzn_A 97 VRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHCTT
T ss_pred HHHHHHhCCC
Confidence 9888 554
No 242
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=90.77 E-value=10 Score=34.99 Aligned_cols=168 Identities=13% Similarity=0.068 Sum_probs=97.3
Q ss_pred HHhHHHHHhhhcCChhhHHHHHcccCCCCcchHHHHHHHHHhcCChhHHHHHH----HHHHhcCCCCCCcchHHHHHHHh
Q 007329 132 LGNAFLSMFVKFGDLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLY----QRMFWVGGVKPDVYTFPCVLRTC 207 (608)
Q Consensus 132 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~----~~m~~~~~~~p~~~~~~~ll~~~ 207 (608)
+|.++..-|.+.+++++|++++-.- ...+.+.|+...|.++- +...+.+ +++|......++..+
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~-~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAG-QRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHT-CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHH
Confidence 3455666677888888888876542 22345556655544433 4444444 788887777777776
Q ss_pred cCCCChh-hHHHHHHHH----HHhC--CCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCChh
Q 007329 208 GGVPDLK-RGKEVHVHV----IRFG--YEADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYM 280 (608)
Q Consensus 208 ~~~~~~~-~a~~~~~~~----~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 280 (608)
.....-+ .=..+.+.+ .+.| ..-|......+...|.+.+++.+|...|-.-.++++..|..++.-+...+...
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~ 184 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESH 184 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCc
Confidence 6555322 112333333 3344 23466777888899999999999998885322223356655555554444322
Q ss_pred HHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHH
Q 007329 281 KGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIK 326 (608)
Q Consensus 281 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 326 (608)
++- .+.-. .+--|...++...|..+++...+
T Consensus 185 e~d--------------lfiaR-aVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 TAP--------------LYCAR-AVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp GHH--------------HHHHH-HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHH--------------HHHHH-HHHHHHHhCCHHHHHHHHHHHHH
Confidence 221 11112 22234556788888777766553
No 243
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.40 E-value=4.9 Score=41.95 Aligned_cols=49 Identities=10% Similarity=-0.040 Sum_probs=23.7
Q ss_pred ccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 511 RIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 511 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
..|+++.|+++-+++....+. +-.+|..|..+|...|+++.|+-.+..+
T Consensus 349 ~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 349 NRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 344455555555544444333 3444555555555555555555554444
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.94 E-value=5 Score=41.84 Aligned_cols=50 Identities=14% Similarity=0.106 Sum_probs=44.1
Q ss_pred HHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007329 541 LDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKM 590 (608)
Q Consensus 541 ~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 590 (608)
.+.+...|+++-|+++-+++ +-+..+|..|..+|...|+++.|+-.++-+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 44566789999999999988 557899999999999999999999888876
No 245
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=89.77 E-value=2.3 Score=30.65 Aligned_cols=86 Identities=20% Similarity=0.140 Sum_probs=60.8
Q ss_pred CchhhhHHHHHHHHhcCCcchhHHhHHHHHhhhcCChhhHHHHHcccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007329 110 GYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFGDLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFW 189 (608)
Q Consensus 110 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 189 (608)
..++|.-+-+.+...+. ...+--.-+..+...|++++|..+.+..+.||...|-+|-. .+.|-.+++...+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45677777777666554 22222333455678899999999999999999999988765 467888888888878876
Q ss_pred cCCCCCCcchHH
Q 007329 190 VGGVKPDVYTFP 201 (608)
Q Consensus 190 ~~~~~p~~~~~~ 201 (608)
+| .|....|.
T Consensus 98 sg--~p~~q~Fa 107 (116)
T 2p58_C 98 SQ--DPRIQTFV 107 (116)
T ss_dssp CC--CHHHHHHH
T ss_pred CC--CHHHHHHH
Confidence 66 55544443
No 246
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=89.40 E-value=2.2 Score=30.72 Aligned_cols=86 Identities=13% Similarity=-0.002 Sum_probs=61.5
Q ss_pred CchhhhHHHHHHHHhcCCcchhHHhHHHHHhhhcCChhhHHHHHcccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007329 110 GYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFGDLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFW 189 (608)
Q Consensus 110 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 189 (608)
..++|.-+-+.+...+. ...+--.-+..+...|++++|..+.+..+.||...|-+|-. .+.|-.+++...+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45677777776666554 22222333455678899999999999999999999987755 578888888888888887
Q ss_pred cCCCCCCcchHH
Q 007329 190 VGGVKPDVYTFP 201 (608)
Q Consensus 190 ~~~~~p~~~~~~ 201 (608)
+| .|....|.
T Consensus 97 sg--~p~~q~Fa 106 (115)
T 2uwj_G 97 SS--DPALADFA 106 (115)
T ss_dssp CS--SHHHHHHH
T ss_pred CC--CHHHHHHH
Confidence 76 55544443
No 247
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=88.64 E-value=5.7 Score=32.12 Aligned_cols=21 Identities=19% Similarity=0.145 Sum_probs=15.0
Q ss_pred HHHHhHhcCCHHHHHHHHHhc
Q 007329 540 LLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 540 l~~~~~~~g~~~~A~~~~~~~ 560 (608)
+..+|.+.|++++|+.+++.+
T Consensus 128 ia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 128 LAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHCCHHHHHHHHhcC
Confidence 556677777777777777776
No 248
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.58 E-value=3.3 Score=46.24 Aligned_cols=52 Identities=19% Similarity=0.116 Sum_probs=26.8
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCC
Q 007329 405 VLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIP 461 (608)
Q Consensus 405 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 461 (608)
++..+...+..+.+.++... ++.+....-.+..+|...|++++|.+.|++..
T Consensus 818 l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa 869 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 869 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 44445555555555443321 12233333344555666777777777776653
No 249
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=88.35 E-value=2.9 Score=36.95 Aligned_cols=115 Identities=8% Similarity=-0.047 Sum_probs=79.3
Q ss_pred HHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCC--ccHHHHHHHHhHhcCC
Q 007329 472 ILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFD--GFLPNALLDMYVRCGR 549 (608)
Q Consensus 472 ~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~ 549 (608)
+..+.+.|+.++|++....-++..+-|...-..++.-+|-.|++++|.+-++...+..+... ...|..+|.+
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a------ 77 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA------ 77 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH------
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH------
Confidence 34567889999999999998878888998899999999999999999999998888755422 2234444432
Q ss_pred HHHHHH-HHHhc-CC-----CHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHc
Q 007329 550 MKPAWN-QFNSN-ER-----DVSAWNILLTGYA--ERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 550 ~~~A~~-~~~~~-~~-----~~~~~~~l~~~~~--~~g~~~~A~~~~~~m~~~ 593 (608)
+..++ +|..- .| ...-...++.+.. ..|+.++|.++-+++.+.
T Consensus 78 -E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 -AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp -HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 11111 22211 22 2233345566654 569999999999888765
No 250
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=87.88 E-value=2.3 Score=40.79 Aligned_cols=70 Identities=7% Similarity=-0.063 Sum_probs=52.1
Q ss_pred HHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH-----HhCCCCCccHHH
Q 007329 469 TSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHAL-----RIGVAFDGFLPN 538 (608)
Q Consensus 469 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-----~~~~~p~~~~~~ 538 (608)
..++..+...|++++|+..+..+....+-+...+..++.++.+.|+..+|++.|+... +.|+.|.+.+-.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 3455667778888888888877775556677788888888888888888888887765 458888766543
No 251
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.58 E-value=7.3 Score=43.52 Aligned_cols=53 Identities=17% Similarity=0.170 Sum_probs=35.7
Q ss_pred hHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHcCCCchHHHHHHHHH
Q 007329 337 NPLIKMYLSFGNREEGEKVFSRMESKDVVSWTTMISCYEGSVLPDKAVETYQMM 390 (608)
Q Consensus 337 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 390 (608)
..++..+...+..+-+.++..-... +...--.+..+|...|++++|.+.|++.
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3466667777887777776655544 3333344566788888888888888764
No 252
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.37 E-value=3.2 Score=30.15 Aligned_cols=63 Identities=8% Similarity=0.144 Sum_probs=47.7
Q ss_pred ChHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHH
Q 007329 75 SLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLS 138 (608)
Q Consensus 75 ~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (608)
+.-+..+-++.+....+.|++....+.+++|.+.+++..|.++++-+...-.. ...+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~-~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP-HKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-CTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC-chhhHHHHHH
Confidence 55677778888888888899999999999999999999999998887654322 2445665554
No 253
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=86.95 E-value=3 Score=32.24 Aligned_cols=67 Identities=7% Similarity=-0.133 Sum_probs=36.1
Q ss_pred CCCCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 494 NLKPNSVTLVSILSACARIG---ALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 494 ~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
+-.|+..|--.+.+++++.. +..++..+++.+.+.+..-....+-.|.-++.+.|++++|.+..+.+
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~l 104 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTL 104 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34455555555555665554 33456666666665543222333334555566666666666666655
No 254
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=86.80 E-value=2.3 Score=40.72 Aligned_cols=63 Identities=16% Similarity=0.199 Sum_probs=49.9
Q ss_pred HHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCch
Q 007329 538 NALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKMID-----SKGNWRKL 600 (608)
Q Consensus 538 ~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~ 600 (608)
..+++.+...|++++|...+... +-+...|..++.+|.+.|+..+|++.|+++.+ .|+.|..-
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 45677788889998888887776 44677888999999999999999888887643 48888766
No 255
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=86.08 E-value=6.8 Score=30.74 Aligned_cols=66 Identities=8% Similarity=-0.137 Sum_probs=42.3
Q ss_pred CCCCHHHHHHHHHHHhccCc---HHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 495 LKPNSVTLVSILSACARIGA---LMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 495 ~~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
-.|+..+--.+.+++.+..+ ..++..+++.+.+.++.-.....-.|.-++.|.|++++|.+..+.+
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~l 103 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTL 103 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 35666666666777766653 4467777777776554323333344666777777777777777766
No 256
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=85.83 E-value=11 Score=35.89 Aligned_cols=26 Identities=12% Similarity=-0.101 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHH
Q 007329 400 ITIASVLSACACLGNLDLGIKLHQLA 425 (608)
Q Consensus 400 ~t~~~ll~~~~~~~~~~~a~~~~~~~ 425 (608)
.....|...|.+.|+.++..+++...
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~ 45 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVT 45 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34445555666666666655555543
No 257
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=85.59 E-value=22 Score=32.73 Aligned_cols=167 Identities=13% Similarity=0.060 Sum_probs=99.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCChhHHHHHH----HHHHHCCCCCChhHHHHHHHHHh
Q 007329 234 VVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLF----IMMREVLVDPDFMTLSSVISASE 309 (608)
Q Consensus 234 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~----~~m~~~~~~p~~~~~~~ll~~~~ 309 (608)
+|.++..-|.+.+++++|.+++.. -...+.+.|+...+.++- +-..+.++++|......++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 456677778899999999887543 234566677777666655 44556788888888888887776
Q ss_pred hcCChh-hHHHHHHHHHHh----C--CCCCcccchHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHcCCCchH
Q 007329 310 LVGDEK-LGREVHGYVIKM----G--FSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVVSWTTMISCYEGSVLPDK 382 (608)
Q Consensus 310 ~~~~~~-~a~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 382 (608)
.....+ .-..+++.+++. | -.-|+.....+...|.+.+++.+|+.-|-.-.++....+..++.-+...+...+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e 185 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT 185 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc
Confidence 655322 223344444432 3 223566777888899999999999888743222223455444433333222111
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 007329 383 AVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAM 426 (608)
Q Consensus 383 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 426 (608)
+|...-..+ --|...+++..|..+++...
T Consensus 186 --------------~dlfiaRaV-L~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 186 --------------APLYCARAV-LPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp --------------HHHHHHHHH-HHHHHTTCHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHH-HHHHHhCCHHHHHHHHHHHH
Confidence 122222222 33555678888887766544
No 258
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=84.49 E-value=8.5 Score=29.73 Aligned_cols=70 Identities=7% Similarity=0.014 Sum_probs=54.0
Q ss_pred CCCCCccHHHHHHHHhHhcCC---HHHHHHHHHhc---CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 529 GVAFDGFLPNALLDMYVRCGR---MKPAWNQFNSN---ER--DVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 529 ~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
+..|++.+--.+..++.+..+ ..+++.+++++ .| ....+--|.-++.+.|++++|.++.+.+++. .|+..
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~N~ 112 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNK 112 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTTCH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCCCH
Confidence 455566665567778887765 45678888877 44 3556778888999999999999999999985 88876
No 259
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=84.36 E-value=6.7 Score=28.50 Aligned_cols=60 Identities=13% Similarity=0.189 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 007329 382 KAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLID 442 (608)
Q Consensus 382 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 442 (608)
++.+-++.+....+.|++......+++|-+.+++..|.++++-+...- .....+|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 556667777777888999999999999999999999999998777432 233456666654
No 260
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=82.55 E-value=12 Score=27.10 Aligned_cols=79 Identities=14% Similarity=-0.021 Sum_probs=57.2
Q ss_pred CChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 007329 211 PDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMR 290 (608)
Q Consensus 211 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 290 (608)
...++|..+-+.+...|. ...+--.-+..+...|++++|..+.+...-||...|-+|... +.|..+++...+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 345677777776666653 333333334557788999999999999999999998877654 6788888888887777
Q ss_pred HCC
Q 007329 291 EVL 293 (608)
Q Consensus 291 ~~~ 293 (608)
..|
T Consensus 96 ~sg 98 (115)
T 2uwj_G 96 GSS 98 (115)
T ss_dssp TCS
T ss_pred hCC
Confidence 664
No 261
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=82.40 E-value=16 Score=29.58 Aligned_cols=122 Identities=11% Similarity=0.068 Sum_probs=66.9
Q ss_pred HHHHHhhhcCChhhHHHHHcccC-----CCCc-------chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcc-hHH
Q 007329 135 AFLSMFVKFGDLGHAWYVFGKMC-----DRDL-------FSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVY-TFP 201 (608)
Q Consensus 135 ~l~~~~~~~g~~~~A~~~~~~~~-----~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~ 201 (608)
.-+..+...|.++.|+.+.+.+. .++. .++..+.+++...|++.+|...|++..+....-+... ++.
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 33566777888888888777652 2332 1456677788888888888888888654321212111 111
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCC--CHhHHHHH
Q 007329 202 CVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKR--DRISWNAM 269 (608)
Q Consensus 202 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l 269 (608)
.+ .. ...... ......+...--.+..+|.+.|++++|+.+++.++.+ ++..--.|
T Consensus 105 ~~-~~---~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~L 161 (167)
T 3ffl_A 105 ST-GN---SASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLL 161 (167)
T ss_dssp -------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHH
T ss_pred cc-cc---cCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHH
Confidence 11 00 000000 0012234445455777888888899998888888653 44443333
No 262
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=82.26 E-value=12 Score=27.07 Aligned_cols=79 Identities=11% Similarity=-0.042 Sum_probs=55.6
Q ss_pred CChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 007329 211 PDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMR 290 (608)
Q Consensus 211 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 290 (608)
...++|..+-+.+...|. ...+--.-+..+...|++++|..+.+...-||...|-+|... +.|..+++...+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 345667777776666653 333333334557788999999999999998999988777654 6677777777776776
Q ss_pred HCC
Q 007329 291 EVL 293 (608)
Q Consensus 291 ~~~ 293 (608)
..|
T Consensus 97 ~sg 99 (116)
T 2p58_C 97 RSQ 99 (116)
T ss_dssp TCC
T ss_pred hCC
Confidence 554
No 263
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=80.34 E-value=54 Score=33.40 Aligned_cols=112 Identities=13% Similarity=-0.073 Sum_probs=70.1
Q ss_pred CCchHHHHHHHHHHHCCCCCCHHHHHH----HHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHH
Q 007329 378 VLPDKAVETYQMMEAEGSMPDEITIAS----VLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKA 453 (608)
Q Consensus 378 ~~~~~a~~~~~~m~~~g~~p~~~t~~~----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 453 (608)
.+.+.|...+....... ..+...... +.......+...++...+....... .+.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHH
Confidence 37789999998887543 223333222 2223334453556666666544332 3333344445555678999999
Q ss_pred HHHHccCCCCCc--cc-HHHHHHHHHhCCCchHHHHHHHHhH
Q 007329 454 LEVFHQIPDKNV--IS-WTSIILGLRLNNRSFEALIFFRKMM 492 (608)
Q Consensus 454 ~~~~~~~~~~~~--~~-~~~l~~~~~~~~~~~~A~~~~~~m~ 492 (608)
...|+.|..... .- ..=+..++.+.|+.++|..+|+.+.
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 999999986322 11 2234557778999999999999886
No 264
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=80.00 E-value=39 Score=31.53 Aligned_cols=70 Identities=14% Similarity=0.140 Sum_probs=46.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHccCCCCC---HhHHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCChhHHHHHH
Q 007329 236 NALITMYVKCGDLVRARLVFDGMPKRD---RISWNAMISGYFENGE--YMKGLMLFIMMREVLVDPDFMTLSSVI 305 (608)
Q Consensus 236 ~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~~~~ll 305 (608)
..++.-|...|+.++|.+.++++..+. ......+..++-+.++ .+...+++..+...|+-+.......+.
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~ 295 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYE 295 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 567888889999999999999988763 3344455555544333 456778888888777665544443333
No 265
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=79.78 E-value=32 Score=30.50 Aligned_cols=15 Identities=13% Similarity=0.085 Sum_probs=7.6
Q ss_pred HHHHHHHhCCChHHH
Q 007329 65 SRLNELCLNGSLEQA 79 (608)
Q Consensus 65 ~ll~~~~~~~~~~~A 79 (608)
..+...++.|+.+-.
T Consensus 7 ~~L~~A~~~g~~~~v 21 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLV 21 (285)
T ss_dssp HHHHHHHHTTCHHHH
T ss_pred hHHHHHHHcCCHHHH
Confidence 344455556665443
No 266
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=79.70 E-value=51 Score=33.81 Aligned_cols=20 Identities=10% Similarity=0.086 Sum_probs=14.0
Q ss_pred HHHhcCCHHHHHHHHccCCC
Q 007329 241 MYVKCGDLVRARLVFDGMPK 260 (608)
Q Consensus 241 ~~~~~g~~~~A~~~~~~~~~ 260 (608)
-+...|++++|..+|.-..+
T Consensus 452 ~ae~~G~~~dAi~LY~La~~ 471 (661)
T 2qx5_A 452 RADEDGRIYDSILLYQLAEE 471 (661)
T ss_dssp HHHHTTCHHHHHHHHHHTTC
T ss_pred HHHHCCCHHHHHHHHHHhcC
Confidence 45567888888887766544
No 267
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=79.21 E-value=21 Score=27.98 Aligned_cols=70 Identities=7% Similarity=0.014 Sum_probs=53.1
Q ss_pred CCCCCccHHHHHHHHhHhcCC---HHHHHHHHHhc---CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 529 GVAFDGFLPNALLDMYVRCGR---MKPAWNQFNSN---ER--DVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 529 ~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
+..|+..+--.+..++.+..+ ..+++.+++.+ .| ......-|.-++.+.|++++|.++.+.+++. .|+.-
T Consensus 34 ~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~n~ 111 (144)
T 1y8m_A 34 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNK 111 (144)
T ss_dssp STTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCCCH
T ss_pred cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcH
Confidence 334566666667788888775 45678888887 44 2445567777999999999999999999995 88875
No 268
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=79.18 E-value=9.2 Score=29.50 Aligned_cols=75 Identities=8% Similarity=0.101 Sum_probs=53.6
Q ss_pred hHHHHHHHHh-CC-ChHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHH
Q 007329 63 PNSRLNELCL-NG-SLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLS 138 (608)
Q Consensus 63 ~~~ll~~~~~-~~-~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (608)
+...-..|.. .. |.-+..+-++.+....+-|++......+++|.+.+|+..|.++++-+...-. +...+|..+++
T Consensus 54 FdaRy~~~F~~~~iD~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~-~~~~iY~y~lq 130 (152)
T 2y69_E 54 FDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG-PHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCTTHHHHHHH
T ss_pred HHHHHHHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC-CchhhHHHHHH
Confidence 3344444443 33 5566777788888888899999999999999999999999999988765432 23455666554
No 269
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.80 E-value=50 Score=32.08 Aligned_cols=92 Identities=7% Similarity=-0.072 Sum_probs=64.1
Q ss_pred HHHHHHHHhCCCchHHHHHHHHhH-hCCCC-C----HHHHHHHHHHHhccCcHHHHHHHHHHHHH----hCCCCC--ccH
Q 007329 469 TSIILGLRLNNRSFEALIFFRKMM-LNLKP-N----SVTLVSILSACARIGALMCGKEIHAHALR----IGVAFD--GFL 536 (608)
Q Consensus 469 ~~l~~~~~~~~~~~~A~~~~~~m~-~~~~p-~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~p~--~~~ 536 (608)
..|...+...|++.+|.+++.++. +-... + ...+..-++.|...+++.+|..++.++.. ....|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 456777888899999998888887 22211 2 23456667788888999999888887652 111121 245
Q ss_pred HHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 537 PNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 537 ~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
+...+..+...+++.+|...|..+
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHH
Confidence 667778888889999888877766
No 270
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=76.37 E-value=15 Score=28.36 Aligned_cols=60 Identities=13% Similarity=0.189 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 007329 382 KAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLID 442 (608)
Q Consensus 382 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 442 (608)
+..+-++.+....+.|++......+++|-+.+++..|.++++-++..- .+...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 455566677777889999999999999999999999999998777432 333556776654
No 271
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=75.08 E-value=39 Score=29.87 Aligned_cols=48 Identities=8% Similarity=0.066 Sum_probs=24.6
Q ss_pred hcCChhhHHHHHHHHHHhCCCCCccc--chHHHHHHHhcCChHHHHHHHh
Q 007329 310 LVGDEKLGREVHGYVIKMGFSDDVSV--CNPLIKMYLSFGNREEGEKVFS 357 (608)
Q Consensus 310 ~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~ 357 (608)
..++.....++.+.+.+.|..++... -.+.+...++.|+.+-+..+++
T Consensus 191 ~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 191 LSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 34444444556666666665544322 2234444455566665555555
No 272
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.33 E-value=37 Score=32.81 Aligned_cols=94 Identities=11% Similarity=-0.090 Sum_probs=46.9
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHhH---hCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhC-CCCCccHHH----
Q 007329 467 SWTSIILGLRLNNRSFEALIFFRKMM---LNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIG-VAFDGFLPN---- 538 (608)
Q Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~m~---~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~---- 538 (608)
++..+..-|.+.|++++|.+.|.++. .+..--...+..+++.+...+++..+...+.++...- -.+|....+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 44455555666666666666666665 1122223345555666666666666666666554321 111221111
Q ss_pred HHHHHhHhcCCHHHHHHHHHhc
Q 007329 539 ALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 539 ~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
.-+-.+...+++.+|-..|-++
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHH
Confidence 1122234556666666666544
No 273
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=70.92 E-value=46 Score=27.96 Aligned_cols=60 Identities=13% Similarity=-0.017 Sum_probs=27.2
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 007329 230 ADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMR 290 (608)
Q Consensus 230 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 290 (608)
++..+-...+.++.+.|+.+....+.+.+..++...-...+.++.+.+. .++...+..+.
T Consensus 124 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l 183 (211)
T 3ltm_A 124 EDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLA 183 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 3444444455555555554433334444444454444445555555444 23333343333
No 274
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=69.62 E-value=1e+02 Score=31.41 Aligned_cols=310 Identities=9% Similarity=-0.028 Sum_probs=160.6
Q ss_pred HHHHhCCChHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcc-hhHHhHHHHHhhhcCCh
Q 007329 68 NELCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLS-VRLGNAFLSMFVKFGDL 146 (608)
Q Consensus 68 ~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 146 (608)
....+.|++..+..+...+...-+ ..-..|..+...+. ..... ++..-+.+..-.|- ...-+..+..+.+.+++
T Consensus 14 ~~a~~~~~~~~~~~l~~~l~~~pL-~~yl~y~~l~~~l~-~~~~~---ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w 88 (618)
T 1qsa_A 14 KQAWDNRQMDVVEQMMPGLKDYPL-YPYLEYRQITDDLM-NQPAV---TVTNFVRANPTLPPARTLQSRFVNELARREDW 88 (618)
T ss_dssp HHHHHTTCHHHHHHHSGGGTTSTT-HHHHHHHHHHHTGG-GCCHH---HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHCCCHHHHHHHHHhhcCCCc-HHHHHHHHHHhCcc-cCCHH---HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCH
Confidence 345667888887777665533211 11123333332221 11222 33333333332222 23445566777888899
Q ss_pred hhHHHHHcccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhh--HHHHHHHHH
Q 007329 147 GHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKR--GKEVHVHVI 224 (608)
Q Consensus 147 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~--a~~~~~~~~ 224 (608)
......+.. +..+...-.....+....|+..+|......+-..+ ......+..++..+.+.|.+.. ..+=++.+.
T Consensus 89 ~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~--~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al 165 (618)
T 1qsa_A 89 RGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG--KSQPNACDKLFSVWRASGKQDPLAYLERIRLAM 165 (618)
T ss_dssp HHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS--SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC--CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 988887776 43344444456667778898888888887777666 3344566667776665554432 222222222
Q ss_pred HhC-----------CCCchhH-HHHHHHHHHhcCCHHHHHHHHccCCCC--CHhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 007329 225 RFG-----------YEADVDV-VNALITMYVKCGDLVRARLVFDGMPKR--DRISWNAMISGYFENGEYMKGLMLFIMMR 290 (608)
Q Consensus 225 ~~g-----------~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 290 (608)
..| +.++... ...++..+ .+...+.......... +...+...+.-+.+. +.+.|...+....
T Consensus 166 ~~~~~~~a~~l~~~l~~~~~~~a~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~~~~rlar~-d~~~A~~~~~~~~ 241 (618)
T 1qsa_A 166 KAGNTGLVTVLAGQMPADYQTIASAIISLA---NNPNTVLTFARTTGATDFTRQMAAVAFASVARQ-DAENARLMIPSLA 241 (618)
T ss_dssp HTTCHHHHHHHHHTCCGGGHHHHHHHHHHH---HCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHhCCHHHHHHHHHHHHHH---hChHhHHHHHhccCCChhhHHHHHHHHHHHHhc-CHHHHHHHHHhhh
Confidence 222 1112111 11111111 1222222222222111 111122223334443 7788999998886
Q ss_pred HCCCCCChhHHH----HHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCCCC---
Q 007329 291 EVLVDPDFMTLS----SVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKD--- 363 (608)
Q Consensus 291 ~~~~~p~~~~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--- 363 (608)
+.+. .+..... .+.......+...++...+...... ..+.....-.+....+.|+++.|...|+.|....
T Consensus 242 ~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~ 318 (618)
T 1qsa_A 242 QAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEK 318 (618)
T ss_dssp HHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGS
T ss_pred hccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHHHHHHHcccccccc
Confidence 5432 2333222 2222333444355666666664433 2333334445555667899999999999997632
Q ss_pred hhhHHHHHHHHHcCCCchHHHHHHHHHHH
Q 007329 364 VVSWTTMISCYEGSVLPDKAVETYQMMEA 392 (608)
Q Consensus 364 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 392 (608)
....-=+.+++...|+.++|..+|..+..
T Consensus 319 ~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 319 DEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 22222244567788999999999988764
No 275
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=69.21 E-value=23 Score=32.28 Aligned_cols=65 Identities=17% Similarity=0.189 Sum_probs=43.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHccCCCC---CHhHHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCChhH
Q 007329 236 NALITMYVKCGDLVRARLVFDGMPKR---DRISWNAMISGYFENGE--YMKGLMLFIMMREVLVDPDFMT 300 (608)
Q Consensus 236 ~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~ 300 (608)
..++.-|...|+.++|.+.++++..| ....+..+..++-+.++ .+...+++..+.+.|+-+....
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~ 239 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQM 239 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 56778888889999999999999876 22344444455544333 4556778888877766554443
No 276
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=67.06 E-value=53 Score=29.36 Aligned_cols=12 Identities=8% Similarity=-0.019 Sum_probs=4.7
Q ss_pred HhcCChHHHHHH
Q 007329 344 LSFGNREEGEKV 355 (608)
Q Consensus 344 ~~~~~~~~a~~~ 355 (608)
+..|+.+-+.-+
T Consensus 203 ~~~~~~~~v~~L 214 (285)
T 3kea_A 203 IDNKDIEMLQAL 214 (285)
T ss_dssp HHHTCHHHHHHH
T ss_pred HHcCCHHHHHHH
Confidence 334444333333
No 277
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=66.85 E-value=83 Score=29.33 Aligned_cols=62 Identities=10% Similarity=0.072 Sum_probs=38.5
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHhCCCC--CHHHHHHHHHHHhccC--cHHHHHHHHHHHHHhCCC
Q 007329 468 WTSIILGLRLNNRSFEALIFFRKMMLNLKP--NSVTLVSILSACARIG--ALMCGKEIHAHALRIGVA 531 (608)
Q Consensus 468 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p--~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~ 531 (608)
.+.++.-|...++.++|.+.++++. .+. ...+...+..++-+.+ ..+...+++..+.+.|+-
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~--~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gll 285 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELE--VPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 285 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHC--CTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHhccCCCHHHHHHHHHHcc--CCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCC
Confidence 4667788888888999998888885 221 1233444555555433 234566677766666544
No 278
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=66.35 E-value=78 Score=30.37 Aligned_cols=111 Identities=11% Similarity=0.133 Sum_probs=52.3
Q ss_pred HHHHHHhCCChHHHHHHHHHHhhcCCCCChhh--HHHHHHHhhccCCchhhhHHHHHHHHhcCCcchh--HHhHHHHHhh
Q 007329 66 RLNELCLNGSLEQALKYLDSMQELNICVDEDA--LVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVR--LGNAFLSMFV 141 (608)
Q Consensus 66 ll~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~ 141 (608)
.+..-+..|+.+-+..++ +.|..++... ..+.+...+..|+.+-+..+ ++.|..++.. .....+...+
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll----~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~g~t~L~~A~ 88 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLL----QRGASPNVSNVKVETPLHMAARAGHTEVAKYL----LQNKAKVNAKAKDDQTPLHCAA 88 (437)
T ss_dssp HHHHHHHHTCHHHHHHHH----HTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHH----HHHTCCSSCCCTTSCCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHH----HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH----HhCCCCCCCCCCCCCCHHHHHH
Confidence 355556667765544444 4455444221 12334444455665544433 4455443221 1123344555
Q ss_pred hcCChhhHHHHHcccCCCC---cchHHHHHHHHHhcCChhHHHHHHH
Q 007329 142 KFGDLGHAWYVFGKMCDRD---LFSWNVLIGGYAKAGFFDEALSLYQ 185 (608)
Q Consensus 142 ~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~ 185 (608)
+.|..+-+.-+++.-..++ ...++. +...+..|+.+-+..+++
T Consensus 89 ~~g~~~~v~~Ll~~ga~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~ 134 (437)
T 1n11_A 89 RIGHTNMVKLLLENNANPNLATTAGHTP-LHIAAREGHVETVLALLE 134 (437)
T ss_dssp HHTCHHHHHHHHHHTCCTTCCCTTCCCH-HHHHHHHTCHHHHHHHHH
T ss_pred HCCCHHHHHHHHhCCCCCCCCCCCCCcH-HHHHHHcCCHHHHHHHHh
Confidence 6677776666666543322 222222 333455566655555444
No 279
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=65.01 E-value=21 Score=31.55 Aligned_cols=49 Identities=16% Similarity=0.023 Sum_probs=29.4
Q ss_pred hHhcCCHHHHHHHHccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHhH
Q 007329 444 YSKCKCIDKALEVFHQIPD---KNVISWTSIILGLRLNNRSFEALIFFRKMM 492 (608)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 492 (608)
..+.|++++|++....-.+ .|...-..++..+|-.|+++.|..-++...
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a 58 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSI 58 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4556667766666554332 234445556667777777777766666555
No 280
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=64.82 E-value=46 Score=30.28 Aligned_cols=42 Identities=10% Similarity=0.010 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch---hhhhccc
Q 007329 566 AWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL---MGLFRKC 607 (608)
Q Consensus 566 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~~ac 607 (608)
+...-+....+.+++.-|..+.+++++.+..|+.. ..++.+|
T Consensus 209 aLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a~qArkil~~c 253 (325)
T 3mv2_A 209 ALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRAEQARKIKNKA 253 (325)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 45555666667777777777777777654433333 4444444
No 281
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=64.27 E-value=81 Score=28.86 Aligned_cols=27 Identities=22% Similarity=0.175 Sum_probs=17.4
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHhhcCCCCC
Q 007329 64 NSRLNELCLNGSLEQALKYLDSMQELNICVD 94 (608)
Q Consensus 64 ~~ll~~~~~~~~~~~A~~~~~~~~~~g~~~~ 94 (608)
++.|..-++.|+.+-+..++ +.|..++
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL----~~Gadvn 52 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLL----EGGANVN 52 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHH----HHTCCTT
T ss_pred ChHHHHHHHcCCHHHHHHHH----HCCCCCC
Confidence 55666777888877655444 4566554
No 282
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=63.15 E-value=44 Score=32.30 Aligned_cols=58 Identities=9% Similarity=-0.170 Sum_probs=41.4
Q ss_pred HHhHHHHHhhhcCChhhHHHHHcccCC------CCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007329 132 LGNAFLSMFVKFGDLGHAWYVFGKMCD------RDLFSWNVLIGGYAKAGFFDEALSLYQRMFW 189 (608)
Q Consensus 132 ~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 189 (608)
+...+...|.+.|+++.|.+.|.++.. .-...+-.+|+.+...+++..+...+.+...
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 456677788888888888888877732 2234566677777778888888877777654
No 283
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=62.63 E-value=73 Score=27.19 Aligned_cols=18 Identities=11% Similarity=-0.012 Sum_probs=8.6
Q ss_pred HHhcCChhHHHHHHHHHH
Q 007329 171 YAKAGFFDEALSLYQRMF 188 (608)
Q Consensus 171 ~~~~g~~~~a~~~~~~m~ 188 (608)
.++.|+.+.+..+++.+.
T Consensus 16 A~~~g~~~~v~~Ll~~~~ 33 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQ 33 (241)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 344455555444444443
No 284
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=59.48 E-value=83 Score=26.82 Aligned_cols=18 Identities=22% Similarity=0.248 Sum_probs=10.3
Q ss_pred HHHhhhcCChhhHHHHHc
Q 007329 137 LSMFVKFGDLGHAWYVFG 154 (608)
Q Consensus 137 ~~~~~~~g~~~~A~~~~~ 154 (608)
+...++.|+.+....+++
T Consensus 13 L~~A~~~g~~~~v~~Ll~ 30 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVN 30 (241)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHH
Confidence 344455666666666655
No 285
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.18 E-value=56 Score=32.21 Aligned_cols=61 Identities=18% Similarity=0.003 Sum_probs=44.1
Q ss_pred hhHHhHHHHHhhhcCChhhHHHHHcccCCCCc-chHH-------HHHHHHHhcCChhHHHHHHHHHHhc
Q 007329 130 VRLGNAFLSMFVKFGDLGHAWYVFGKMCDRDL-FSWN-------VLIGGYAKAGFFDEALSLYQRMFWV 190 (608)
Q Consensus 130 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~-------~li~~~~~~g~~~~a~~~~~~m~~~ 190 (608)
..++|.++..|...+.++.|..+..+..-|.. .+-+ -+...+.-.+++.+|.+.|....+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45678888888888999999999988855532 2222 2345566778899998888887654
No 286
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=57.53 E-value=71 Score=26.79 Aligned_cols=55 Identities=11% Similarity=0.033 Sum_probs=35.2
Q ss_pred CChhHHHHHHHHHHhcCCCCC-CcchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCC
Q 007329 175 GFFDEALSLYQRMFWVGGVKP-DVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEA 230 (608)
Q Consensus 175 g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 230 (608)
+...++.++|..|...+ +-- -...|......+...|++.+|.++|+.-++.+-.|
T Consensus 93 ~~~~~p~~if~~L~~~~-IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKG-IGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHT-SSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCC-CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 34557777888877766 333 23345555556666777777777777777766655
No 287
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=56.81 E-value=37 Score=29.46 Aligned_cols=26 Identities=12% Similarity=0.056 Sum_probs=16.4
Q ss_pred CccHHHHHHHHhHhcCCHHHHHHHHH
Q 007329 533 DGFLPNALLDMYVRCGRMKPAWNQFN 558 (608)
Q Consensus 533 ~~~~~~~l~~~~~~~g~~~~A~~~~~ 558 (608)
+.......+..+.+.|+-++|.++|=
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL 115 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFL 115 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHH
Confidence 44444555666677777777777663
No 288
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=55.97 E-value=67 Score=24.66 Aligned_cols=65 Identities=15% Similarity=0.180 Sum_probs=42.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHccCCCC---CHhHHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCChhH
Q 007329 236 NALITMYVKCGDLVRARLVFDGMPKR---DRISWNAMISGYFENGE--YMKGLMLFIMMREVLVDPDFMT 300 (608)
Q Consensus 236 ~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~ 300 (608)
..++.-|...|+.++|.+.++++..+ .......+..++-+.++ .+.+..++..+...|+-+....
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~ 80 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 80 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 56777788888999999988888765 22344444455554432 3567777877877765544433
No 289
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=55.89 E-value=1.9e+02 Score=29.74 Aligned_cols=44 Identities=16% Similarity=0.067 Sum_probs=28.8
Q ss_pred hHHHHHHHHhCCChHHHHHHHHHHhhcCCCCChhhHHHHHHHhhc
Q 007329 63 PNSRLNELCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEW 107 (608)
Q Consensus 63 ~~~ll~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 107 (608)
.|.+|=-+.|.|++++|.++.++.... +..-...|...+..++.
T Consensus 155 ~Wa~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 155 IWALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC--
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHHh
Confidence 788888999999999999999876431 11112456666666653
No 290
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=55.74 E-value=91 Score=26.13 Aligned_cols=57 Identities=11% Similarity=-0.023 Sum_probs=42.0
Q ss_pred CCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCch
Q 007329 378 VLPDKAVETYQMMEAEGSMPD-EITIASVLSACACLGNLDLGIKLHQLAMRTGLISYI 434 (608)
Q Consensus 378 ~~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 434 (608)
+...++.++|..|..+|+--. ..-|......+...|++.+|.++|+.-++.+-.|-.
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYN 150 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 335688888888888776544 455677777778888888888888888877766643
No 291
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=55.70 E-value=62 Score=26.70 Aligned_cols=179 Identities=9% Similarity=0.093 Sum_probs=82.0
Q ss_pred HHHHHhCCChHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhH--HhHHHHHhhhcC
Q 007329 67 LNELCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRL--GNAFLSMFVKFG 144 (608)
Q Consensus 67 l~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g 144 (608)
+...+..|+.+....++..-...--..+..-. +.+...+..|+.+ +.+.+++.|..++... ....+...+..|
T Consensus 9 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~-t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 83 (201)
T 3hra_A 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGN-TPLNIAVHNNDIE----IAKALIDRGADINLQNSISDSPYLYAGAQG 83 (201)
T ss_dssp HHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSC-CHHHHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHcCCCCCCCCCCCCC-CHHHHHHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence 44556777777766666532100001122222 2333333455544 4444456665544321 123344455678
Q ss_pred ChhhHHHHHcccC-C---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC---CCcchHHHHHHHhcCCCChhhHH
Q 007329 145 DLGHAWYVFGKMC-D---RDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVK---PDVYTFPCVLRTCGGVPDLKRGK 217 (608)
Q Consensus 145 ~~~~A~~~~~~~~-~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~---p~~~~~~~ll~~~~~~~~~~~a~ 217 (608)
..+-+..+++.-. . .+..-.+. +...+..|+.+-+..+++. ++.. .|..-.+.+..++........-.
T Consensus 84 ~~~~~~~Ll~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ 158 (201)
T 3hra_A 84 RTEILAYMLKHATPDLNKHNRYGGNA-LIPAAEKGHIDNVKLLLED----GREDIDFQNDFGYTALIEAVGLREGNQLYQ 158 (201)
T ss_dssp CHHHHHHHHHHSCCCTTCCCTTSCCS-HHHHHHTTCHHHHHHHHHH----CCCCTTCCCTTSCCHHHHHHHSSCCSHHHH
T ss_pred CHHHHHHHHhccCcccccccCCCCcH-HHHHHHcCCHHHHHHHHHc----CCCCcCCCCCCCCCHHHHHHHhccchhhHH
Confidence 8877777775432 1 22222222 2334556666554444443 2122 23333334444433333233346
Q ss_pred HHHHHHHHhCCCCchhHH--HHHHHHHHhcCCHHHHHHHH
Q 007329 218 EVHVHVIRFGYEADVDVV--NALITMYVKCGDLVRARLVF 255 (608)
Q Consensus 218 ~~~~~~~~~g~~~~~~~~--~~li~~~~~~g~~~~A~~~~ 255 (608)
++.+.+++.|..++.... .+-+...++.|+.+-+.-++
T Consensus 159 ~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll 198 (201)
T 3hra_A 159 DIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILA 198 (201)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHH
Confidence 677777777766553321 12233344555555444433
No 292
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=55.60 E-value=18 Score=31.85 Aligned_cols=94 Identities=14% Similarity=-0.018 Sum_probs=51.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHHhhcCCCCChhh-------HHHHHHHhh--ccCCchhhhHHHHHHHHhc---------C
Q 007329 65 SRLNELCLNGSLEQALKYLDSMQELNICVDEDA-------LVNLVRLCE--WKRGYDEGLYLHSVVSKTM---------S 126 (608)
Q Consensus 65 ~ll~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~-------~~~ll~~~~--~~~~~~~a~~~~~~~~~~~---------~ 126 (608)
..+...++.|+.+....+++.+.+.|..++... ...|..+.. +.|+.+-+..+++.-...+ .
T Consensus 7 ~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~ 86 (260)
T 3jxi_A 7 PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPF 86 (260)
T ss_dssp HHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCB
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccc
Confidence 346667788898888888887777776655332 223333322 5677776666655533211 0
Q ss_pred CcchhHHhHHHHHhhhcCChhhHHHHHcccCC
Q 007329 127 HLSVRLGNAFLSMFVKFGDLGHAWYVFGKMCD 158 (608)
Q Consensus 127 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 158 (608)
........+.+...+..|..+-+..+++.-..
T Consensus 87 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~ 118 (260)
T 3jxi_A 87 RDVYYRGQTALHIAIERRCKHYVELLVEKGAD 118 (260)
T ss_dssp CCSSEESBCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred cccccCCCCHHHHHHHcCCHHHHHHHHhCCCC
Confidence 00000112334445566777777767665433
No 293
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=55.42 E-value=99 Score=28.10 Aligned_cols=26 Identities=15% Similarity=0.264 Sum_probs=21.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHccCCCC
Q 007329 236 NALITMYVKCGDLVRARLVFDGMPKR 261 (608)
Q Consensus 236 ~~li~~~~~~g~~~~A~~~~~~~~~~ 261 (608)
..++.-|...|+.++|...++++..+
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el~~p 32 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDLNLG 32 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCc
Confidence 46777788888888888888888765
No 294
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=54.51 E-value=91 Score=25.76 Aligned_cols=50 Identities=16% Similarity=0.054 Sum_probs=24.3
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCCh
Q 007329 230 ADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEY 279 (608)
Q Consensus 230 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~ 279 (608)
++..+....+..+.+.|+.+....+.+.+..++...-...+.++.+.+..
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~ 75 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE 75 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH
Confidence 34444444445555555544444444445455555544455555555443
No 295
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=54.47 E-value=1.5e+02 Score=28.15 Aligned_cols=57 Identities=18% Similarity=0.004 Sum_probs=28.9
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHccCChHHHHHHHHHHH
Q 007329 370 MISCYEGSVLPDKAVETYQMMEAEGSMPD-----EITIASVLSACACLGNLDLGIKLHQLAM 426 (608)
Q Consensus 370 li~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 426 (608)
++..|...|++.+|..++.++.+.=-+.| ...+..-++.|...+++.++...+....
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 44556666666666666665554211111 1123334445555666666666665444
No 296
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=53.91 E-value=58 Score=28.40 Aligned_cols=54 Identities=7% Similarity=-0.145 Sum_probs=29.3
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCCcc-------hHHHHHHHh--cCCCChhhHHHHHHHHH
Q 007329 170 GYAKAGFFDEALSLYQRMFWVGGVKPDVY-------TFPCVLRTC--GGVPDLKRGKEVHVHVI 224 (608)
Q Consensus 170 ~~~~~g~~~~a~~~~~~m~~~~~~~p~~~-------~~~~ll~~~--~~~~~~~~a~~~~~~~~ 224 (608)
..++.|+.+....+++.+.+.+ ..++.. -.+.|..+. ++.|+.+-+..+++.-.
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~-~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHK-KRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHT-CCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-CCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 3456677777766777665554 444422 223333333 25677766666665543
No 297
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=53.33 E-value=61 Score=25.81 Aligned_cols=66 Identities=15% Similarity=0.193 Sum_probs=42.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHccCCCC---CHhHHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCChhH
Q 007329 235 VNALITMYVKCGDLVRARLVFDGMPKR---DRISWNAMISGYFENGE--YMKGLMLFIMMREVLVDPDFMT 300 (608)
Q Consensus 235 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~ 300 (608)
...++.-|...|+.++|.+.++++..+ ...+...+..++-+.++ .+.+..++..+...|+-+....
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~ 82 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 82 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 356777788888999998888888765 22344444445544322 4566777777777665544433
No 298
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=52.18 E-value=97 Score=26.22 Aligned_cols=14 Identities=7% Similarity=-0.265 Sum_probs=5.7
Q ss_pred HHHhcCChHHHHHH
Q 007329 342 MYLSFGNREEGEKV 355 (608)
Q Consensus 342 ~~~~~~~~~~a~~~ 355 (608)
...+.|+.+-+.-+
T Consensus 216 ~A~~~~~~~~v~~L 229 (240)
T 3eu9_A 216 LAKQRKNVWMINHL 229 (240)
T ss_dssp HHHHTTCHHHHHHH
T ss_pred HHHHcCcHHHHHHH
Confidence 33444444443333
No 299
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=49.91 E-value=83 Score=25.00 Aligned_cols=65 Identities=14% Similarity=0.214 Sum_probs=43.1
Q ss_pred hHHHHHHHhcCChHHHHHHHhhCCCCC---hhhHHHHHHHHHcCCC--chHHHHHHHHHHHCCCCCCHHH
Q 007329 337 NPLIKMYLSFGNREEGEKVFSRMESKD---VVSWTTMISCYEGSVL--PDKAVETYQMMEAEGSMPDEIT 401 (608)
Q Consensus 337 ~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~t 401 (608)
+.++.-|...|+.++|...++++..|. ......+..++-+.++ .+.+..++..+...|+-+....
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~ 82 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 82 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 457778888889999999998887653 2334444555555332 4567778888887776544443
No 300
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=49.40 E-value=80 Score=25.96 Aligned_cols=37 Identities=8% Similarity=0.104 Sum_probs=17.6
Q ss_pred HHHHHHHHHhCCCCCcccc--hHHHHHHHhcCChHHHHH
Q 007329 318 REVHGYVIKMGFSDDVSVC--NPLIKMYLSFGNREEGEK 354 (608)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~ 354 (608)
.++.+.+.+.|..++.... .+-+....+.|+.+-+.-
T Consensus 158 ~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~ 196 (201)
T 3hra_A 158 QDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKI 196 (201)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHH
Confidence 4555556666655543322 123444444555544433
No 301
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=49.28 E-value=69 Score=31.55 Aligned_cols=61 Identities=13% Similarity=0.133 Sum_probs=42.6
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcc------hHH-HHHHHhcCCCChhhHHHHHHHHHHh
Q 007329 162 FSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVY------TFP-CVLRTCGGVPDLKRGKEVHVHVIRF 226 (608)
Q Consensus 162 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~------~~~-~ll~~~~~~~~~~~a~~~~~~~~~~ 226 (608)
..+|.+++.|...+.++.|..+..+.. ++.+.. +|. .+.+...-.+++.+|.+.+....+.
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~----fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLE----YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHC----SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCc----CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 468899999999999999999999874 222211 222 2345566677888888877776654
No 302
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=48.40 E-value=90 Score=23.92 Aligned_cols=65 Identities=14% Similarity=0.224 Sum_probs=43.6
Q ss_pred hHHHHHHHhcCChHHHHHHHhhCCCCCh---hhHHHHHHHHHcCCC--chHHHHHHHHHHHCCCCCCHHH
Q 007329 337 NPLIKMYLSFGNREEGEKVFSRMESKDV---VSWTTMISCYEGSVL--PDKAVETYQMMEAEGSMPDEIT 401 (608)
Q Consensus 337 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~t 401 (608)
..++.-|...|+.++|...++++..|.. .....+..++-+.++ .+.+..++..+...|+-+....
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~ 80 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 80 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 4577788888999999999998876532 334444555555432 3567778888887776544443
No 303
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=48.20 E-value=1.2e+02 Score=25.10 Aligned_cols=49 Identities=16% Similarity=0.026 Sum_probs=21.4
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCC
Q 007329 230 ADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGE 278 (608)
Q Consensus 230 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 278 (608)
++..+-...+.++.+.|+.+....+.+.+..++...-...+.++.+.|.
T Consensus 119 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 119 EDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG 167 (201)
T ss_dssp SSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 3444444444455554444333333333334444444444444444443
No 304
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=47.68 E-value=68 Score=27.81 Aligned_cols=24 Identities=13% Similarity=0.104 Sum_probs=19.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHHhh
Q 007329 65 SRLNELCLNGSLEQALKYLDSMQE 88 (608)
Q Consensus 65 ~ll~~~~~~~~~~~A~~~~~~~~~ 88 (608)
.-+..+....++++|+.++++...
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 457788889999999999988754
No 305
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=46.85 E-value=1.3e+02 Score=25.13 Aligned_cols=48 Identities=17% Similarity=0.077 Sum_probs=22.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCC
Q 007329 231 DVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGE 278 (608)
Q Consensus 231 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 278 (608)
+..+-...+..+.+.|+.+....+.+.+..+|...-...+.++.+.++
T Consensus 32 ~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~ 79 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGD 79 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 344444444445555554444444444444454444444455554444
No 306
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=46.43 E-value=74 Score=29.58 Aligned_cols=16 Identities=0% Similarity=-0.078 Sum_probs=7.5
Q ss_pred HHhcCChHHHHHHHhh
Q 007329 343 YLSFGNREEGEKVFSR 358 (608)
Q Consensus 343 ~~~~~~~~~a~~~~~~ 358 (608)
.+..|+.+-+..+++.
T Consensus 251 A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 251 SVRAAMVLLTKELLQK 266 (364)
T ss_dssp HHHTCCHHHHHHHHHH
T ss_pred HHHhChHHHHHHHHHc
Confidence 3444555555444443
No 307
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=45.76 E-value=1.4e+02 Score=25.45 Aligned_cols=55 Identities=13% Similarity=0.117 Sum_probs=45.2
Q ss_pred chHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCch
Q 007329 380 PDKAVETYQMMEAEGSMPD-EITIASVLSACACLGNLDLGIKLHQLAMRTGLISYI 434 (608)
Q Consensus 380 ~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 434 (608)
.+++.++|..|..+|+--. ..-|......+...|++.+|.++|..-++.+-.|-.
T Consensus 130 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 130 IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 3688899999999986654 456778888888999999999999999988877743
No 308
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=44.96 E-value=1.1e+02 Score=33.18 Aligned_cols=126 Identities=13% Similarity=0.008 Sum_probs=70.4
Q ss_pred HHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHH
Q 007329 440 LIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGK 519 (608)
Q Consensus 440 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 519 (608)
++..+...|..+-|.++..-+.. ++..--.+..+|...|++++|.++|++.-.|+..+..... ..+...
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~----------~~~~~~ 884 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFA----------VLREFQ 884 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCG----------GGHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCccccc----------chhhhh
Confidence 55666777888888777766664 4433345667788889999999999887644332210000 000000
Q ss_pred HHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc-----CCCH----HHHHHHHHHHHhcC
Q 007329 520 EIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN-----ERDV----SAWNILLTGYAERG 578 (608)
Q Consensus 520 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~~----~~~~~l~~~~~~~g 578 (608)
.++... +. ......-|..++..+.+.+.++.+.++-+.+ ..|. ..|..+.++.+..|
T Consensus 885 ~ll~~~-e~-~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 885 EIAEKY-HH-QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHT-TT-CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hccCcc-cc-cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 111100 00 0001235677888888888888877766655 2232 25666666665544
No 309
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=44.30 E-value=1.2e+02 Score=24.36 Aligned_cols=55 Identities=9% Similarity=0.045 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchh
Q 007329 381 DKAVETYQMMEAEGSMPD-EITIASVLSACACLGNLDLGIKLHQLAMRTGLISYII 435 (608)
Q Consensus 381 ~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 435 (608)
+...++|..|..+|+-.. ..-|......+...|++..|.++|..-++.+-.|-..
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 457889999999886544 4567777778888999999999999998888777544
No 310
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=40.88 E-value=1.3e+02 Score=23.78 Aligned_cols=84 Identities=8% Similarity=0.001 Sum_probs=55.5
Q ss_pred HHHHHHHhhCCC-CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 007329 350 EEGEKVFSRMES-KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPD-EITIASVLSACACLGNLDLGIKLHQLAMR 427 (608)
Q Consensus 350 ~~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 427 (608)
+.+.+.|..... .|..-|-.+=--|+.. .+++.++|..|..+|+-.. ..-|......+...|++.+|.++++.-++
T Consensus 52 Erc~~~f~~~~~YknD~RyLklWl~ya~~--~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~ 129 (152)
T 4a1g_A 52 EHLMKEFLDKKKYHNDPRFISYCLKFAEY--NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQ 129 (152)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHTT--BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHh--cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444555555443 2322222222223332 3558999999999886544 45677788888899999999999999998
Q ss_pred hCCCCchh
Q 007329 428 TGLISYII 435 (608)
Q Consensus 428 ~~~~~~~~ 435 (608)
.+-.|-..
T Consensus 130 ~~A~P~~r 137 (152)
T 4a1g_A 130 NQAEPREF 137 (152)
T ss_dssp TTCBSHHH
T ss_pred cCCccHHH
Confidence 88777543
No 311
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=40.41 E-value=2.1e+02 Score=25.93 Aligned_cols=105 Identities=10% Similarity=0.059 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhCCCCchhH--HHHHHHHHHhcCCHHHHHHHHccCC----CCCHhHHHHHHHHHHhcCChhHHHHHHHHH
Q 007329 216 GKEVHVHVIRFGYEADVDV--VNALITMYVKCGDLVRARLVFDGMP----KRDRISWNAMISGYFENGEYMKGLMLFIMM 289 (608)
Q Consensus 216 a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 289 (608)
...+.+.+++.|..++... -.+.+...+..|..+.+..+++.-. ..|..-++.|.. -++.|+.+ +.+.+
T Consensus 218 ~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~-A~~~g~~~----iv~~L 292 (337)
T 4g8k_A 218 VEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLL-AVELKLKK----IAELL 292 (337)
T ss_dssp HHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHH-HHHTTCHH----HHHHH
T ss_pred HHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHH-HHHcCCHH----HHHHH
Confidence 3445556677776655321 1233445567788888877776422 122222223322 33455543 44455
Q ss_pred HHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCC
Q 007329 290 REVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDD 332 (608)
Q Consensus 290 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 332 (608)
.+.|..+|..+ .+...++.|+.+ +.+.+++.|-.+|
T Consensus 293 l~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~GA~~d 328 (337)
T 4g8k_A 293 CKRGASTDCGD---LVMTARRNYDHS----LVKVLLSHGAKED 328 (337)
T ss_dssp HTTSCSSTTCC---HHHHHHHTTCHH----HHHHHHHTTCCC-
T ss_pred HHCCCCCCCCC---HHHHHHHcCCHH----HHHHHHHCcCCCC
Confidence 66777776654 233334455543 3445556665555
No 312
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=39.97 E-value=1.3e+02 Score=26.78 Aligned_cols=19 Identities=11% Similarity=0.123 Sum_probs=9.5
Q ss_pred HHHHHhcCChHHHHHHHhh
Q 007329 340 IKMYLSFGNREEGEKVFSR 358 (608)
Q Consensus 340 ~~~~~~~~~~~~a~~~~~~ 358 (608)
+...+..|+.+-+..+++.
T Consensus 99 L~~A~~~g~~~~v~~Ll~~ 117 (285)
T 3kea_A 99 LYYAVDSGNMQTVKLFVKK 117 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhc
Confidence 3334455555555555544
No 313
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=39.96 E-value=1.4e+02 Score=23.69 Aligned_cols=53 Identities=9% Similarity=0.093 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHhcCCCCC-CcchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCc
Q 007329 178 DEALSLYQRMFWVGGVKP-DVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEAD 231 (608)
Q Consensus 178 ~~a~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 231 (608)
+++.++|..|...+ +-- -...|..-...+...|++++|.++|+.-++.+-.|-
T Consensus 82 ~dp~~if~~L~~~~-IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 82 SDLHQFFEFLYNHG-IGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp SCHHHHHHHHHTTT-TTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHCC-CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 44778888887766 433 334455666667777888888888888887776664
No 314
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=39.94 E-value=33 Score=22.06 Aligned_cols=48 Identities=13% Similarity=0.089 Sum_probs=29.5
Q ss_pred HHHHHHHHHhc--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc
Q 007329 550 MKPAWNQFNSN--ERDVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRK 599 (608)
Q Consensus 550 ~~~A~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 599 (608)
.++.++.++.| .-|..+....+.+ ..|+++.|+..+-+|...+..|+.
T Consensus 9 ~ee~l~~L~emFP~ld~~~I~~vL~a--~~gdvd~aI~~LL~m~~~~~~~~~ 58 (59)
T 1wgl_A 9 SEEDLKAIQDMFPNMDQEVIRSVLEA--QRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp CHHHHHHHHHHCSSSCHHHHHHHHTT--TTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred CHHHHHHHHHHCCCCCHHHHHHHHHH--cCCCHHHHHHHHHcCcCCCCCCCC
Confidence 35666667777 3344444444433 367788888887777766666653
No 315
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=38.78 E-value=22 Score=22.85 Aligned_cols=25 Identities=4% Similarity=0.077 Sum_probs=19.6
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCcc
Q 007329 174 AGFFDEALSLYQRMFWVGGVKPDVY 198 (608)
Q Consensus 174 ~g~~~~a~~~~~~m~~~~~~~p~~~ 198 (608)
.-+++.|+..|.++...|.++|+..
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eAF 57 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVAF 57 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHh
Confidence 4578899999999887776777653
No 316
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=37.25 E-value=69 Score=27.83 Aligned_cols=91 Identities=10% Similarity=0.003 Sum_probs=49.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHHhhcCCCCCh-------hhHHHHHHHhhcc---CCchhhhHHHHHHHHhcCCc------
Q 007329 65 SRLNELCLNGSLEQALKYLDSMQELNICVDE-------DALVNLVRLCEWK---RGYDEGLYLHSVVSKTMSHL------ 128 (608)
Q Consensus 65 ~ll~~~~~~~~~~~A~~~~~~~~~~g~~~~~-------~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~~------ 128 (608)
+.+...++.|+.+....+++.+.+.|..++. .-... +...+.. |+.+-+..+++.-...+...
T Consensus 4 t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~-L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~ 82 (256)
T 2etb_A 4 DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTC-LMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQ 82 (256)
T ss_dssp HHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCH-HHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCC
T ss_pred cHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCH-HHHHHHccccchHHHHHHHHhcCCcccchhhhcccc
Confidence 3456667788888877788877777765543 22222 3323333 67766666654433322100
Q ss_pred ----chhHHhHHHHHhhhcCChhhHHHHHcccC
Q 007329 129 ----SVRLGNAFLSMFVKFGDLGHAWYVFGKMC 157 (608)
Q Consensus 129 ----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 157 (608)
|.. ....+...+..|+.+-+..+++.-.
T Consensus 83 ~~~~d~~-g~t~L~~A~~~g~~~~v~~Ll~~ga 114 (256)
T 2etb_A 83 CTDEFYQ-GHSALHIAIEKRSLQCVKLLVENGA 114 (256)
T ss_dssp CCSTTTT-TCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred ccccccc-CCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 111 2233444556777777777776543
No 317
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=36.13 E-value=1.2e+02 Score=24.32 Aligned_cols=72 Identities=11% Similarity=0.165 Sum_probs=49.5
Q ss_pred hhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHh--CCCCchhHHHHHHHHHHhcCCHH
Q 007329 177 FDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRF--GYEADVDVVNALITMYVKCGDLV 249 (608)
Q Consensus 177 ~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~ 249 (608)
.+.+++-+.+..+..|++.+.. -..++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|-+.
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 3455555555544444777543 345667777777888999999999988 76677777666777788777543
No 318
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=35.97 E-value=2.6e+02 Score=30.37 Aligned_cols=127 Identities=9% Similarity=-0.014 Sum_probs=66.5
Q ss_pred HHHHhhhcCChhhHHHHHcccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhh
Q 007329 136 FLSMFVKFGDLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKR 215 (608)
Q Consensus 136 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 215 (608)
++..+...|..+-|.++..-++. +...--.+..+|...|++++|.++|++.- +|+..+....... +.
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA--~gl~~~~~~~~~~----------~~ 882 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS--LVLYSHTSQFAVL----------RE 882 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC--CTTCSSCCSCGGG----------HH
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh--hhcccCcccccch----------hh
Confidence 44555566777777665555544 33333356667778888888888887753 2243322111000 00
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHc----cCCCCCH----hHHHHHHHHHHhcC
Q 007329 216 GKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFD----GMPKRDR----ISWNAMISGYFENG 277 (608)
Q Consensus 216 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~----~~~~~~~----~~~~~li~~~~~~~ 277 (608)
...++... + .......-|..++..+-+.+-++.+.++-+ .+...|. ..|+.+.++.+..|
T Consensus 883 ~~~ll~~~-e-~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 883 FQEIAEKY-H-HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHT-T-TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhhccCcc-c-ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 01111100 0 001123367788888888888877765543 3333333 35666676666544
No 319
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=35.66 E-value=1.9e+02 Score=24.31 Aligned_cols=150 Identities=11% Similarity=0.000 Sum_probs=71.3
Q ss_pred HHHHHhCCChHHHHHHHHHHhhcCCCCCh---hhHHHHHHHhhccCCchhhhHHHHHHHHhcCCc-----ch--hHHhHH
Q 007329 67 LNELCLNGSLEQALKYLDSMQELNICVDE---DALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHL-----SV--RLGNAF 136 (608)
Q Consensus 67 l~~~~~~~~~~~A~~~~~~~~~~g~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~--~~~~~l 136 (608)
+..-++.|+.+....+++. .|..++. .-. +.+...+..|+.+.+..+ ++.+..+ +. ......
T Consensus 7 L~~A~~~g~~~~v~~Ll~~---~g~~~~~~~~~g~-t~L~~A~~~g~~~~v~~L----l~~~~~~~~~~~~~~~~~g~t~ 78 (232)
T 2rfa_A 7 LLLAAKENDVQALSKLLKF---EGCEVHQRGAMGE-TALHIAALYDNLEAAMVL----MEAAPELVFEPMTSELYEGQTA 78 (232)
T ss_dssp HHHHHHTTCHHHHHHHHTT---TCSCTTCCCTTSC-CHHHHHHHTTCHHHHHHH----HHHCGGGGGCCCCSTTTTTCCH
T ss_pred HHHHHHcCCHHHHHHHHHh---cCCCcccCCCCCC-CHHHHHHHcCCHHHHHHH----HHcCchhccccccccCCCCcCH
Confidence 4555667776555444442 1333322 112 233333445555544444 3333322 10 111233
Q ss_pred HHHhhhcCChhhHHHHHcccCCCCc----------------chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcch-
Q 007329 137 LSMFVKFGDLGHAWYVFGKMCDRDL----------------FSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYT- 199 (608)
Q Consensus 137 ~~~~~~~g~~~~A~~~~~~~~~~~~----------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~- 199 (608)
+...+..|+.+-+..+++.-...+. .-++. +...+..|+.+-+.-++ +.| ..++...
T Consensus 79 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~v~~Ll----~~g-a~~~~~d~ 152 (232)
T 2rfa_A 79 LHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHP-LSFAACVGSEEIVRLLI----EHG-ADIRAQDS 152 (232)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSH-HHHHHHHTCHHHHHHHH----HTT-CCTTCCCT
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCH-HHHHHHcCCHHHHHHHH----HCC-CCCCCCCC
Confidence 4445566777776666665433222 12233 33344556654433333 333 4443221
Q ss_pred -HHHHHHHhcCCCChhhHHHHHHHHHHhCCCC
Q 007329 200 -FPCVLRTCGGVPDLKRGKEVHVHVIRFGYEA 230 (608)
Q Consensus 200 -~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 230 (608)
-.+.+...+..|+.+.+.++++.+.+.|..+
T Consensus 153 ~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~ 184 (232)
T 2rfa_A 153 LGNTVLHILILQPNKTFACQMYNLLLSYDGGD 184 (232)
T ss_dssp TSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSC
T ss_pred CCCCHHHHHHHcCChHHHHHHHHHHHhcCCch
Confidence 1234555666777777777777777777543
No 320
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=34.93 E-value=69 Score=29.77 Aligned_cols=37 Identities=16% Similarity=0.221 Sum_probs=17.6
Q ss_pred HHHHHhCCCCCccc--chHHHHHHHhcCChHHHHHHHhh
Q 007329 322 GYVIKMGFSDDVSV--CNPLIKMYLSFGNREEGEKVFSR 358 (608)
Q Consensus 322 ~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~ 358 (608)
+.+++.|..++... ..+.+...+..|+.+-+..+++.
T Consensus 157 ~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ 195 (364)
T 3ljn_A 157 KILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDT 195 (364)
T ss_dssp HHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 33334454444322 12334444556666666666654
No 321
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=34.25 E-value=1.1e+02 Score=20.84 Aligned_cols=61 Identities=8% Similarity=0.023 Sum_probs=38.7
Q ss_pred HHhhcCCCCChhhHHHHHHHhhccC-CchhhhHHHHHHHHhcCCcchhHHhHHHHHhhhcCCh
Q 007329 85 SMQELNICVDEDALVNLVRLCEWKR-GYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFGDL 146 (608)
Q Consensus 85 ~~~~~g~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 146 (608)
.+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.++..+..+....+..+...|-+
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 3555676665443 45566665554 5667778888887776666666666666666666644
No 322
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=33.95 E-value=1.6e+02 Score=24.72 Aligned_cols=15 Identities=0% Similarity=-0.108 Sum_probs=6.7
Q ss_pred HHhcCCHHHHHHHHc
Q 007329 242 YVKCGDLVRARLVFD 256 (608)
Q Consensus 242 ~~~~g~~~~A~~~~~ 256 (608)
.+..|+.+-+..+++
T Consensus 49 A~~~~~~~~v~~Ll~ 63 (240)
T 3eu9_A 49 AAINNRIDLVKYYIS 63 (240)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHH
Confidence 344444444444443
No 323
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=33.86 E-value=2e+02 Score=24.12 Aligned_cols=18 Identities=11% Similarity=-0.117 Sum_probs=9.0
Q ss_pred HHhhhcCChhhHHHHHcc
Q 007329 138 SMFVKFGDLGHAWYVFGK 155 (608)
Q Consensus 138 ~~~~~~g~~~~A~~~~~~ 155 (608)
...++.|+++....+++.
T Consensus 11 ~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 11 CNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHh
Confidence 334445555555555543
No 324
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=32.85 E-value=82 Score=27.71 Aligned_cols=93 Identities=11% Similarity=0.007 Sum_probs=51.3
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHhhcCCCC-------ChhhHHHHHHHhh--ccCCchhhhHHHHHHHHhc---------
Q 007329 64 NSRLNELCLNGSLEQALKYLDSMQELNICV-------DEDALVNLVRLCE--WKRGYDEGLYLHSVVSKTM--------- 125 (608)
Q Consensus 64 ~~ll~~~~~~~~~~~A~~~~~~~~~~g~~~-------~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~--------- 125 (608)
.+.+...++.|+.+.+..+++.....+... +..-...|..++. +.|+.+-+..+++.-...+
T Consensus 14 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~ 93 (273)
T 2pnn_A 14 RRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNAS 93 (273)
T ss_dssp HHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCC
T ss_pred chHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcc
Confidence 455667788899988888888776655433 2233334444443 3577766666655432211
Q ss_pred CC-cchhHHhHHHHHhhhcCChhhHHHHHcccC
Q 007329 126 SH-LSVRLGNAFLSMFVKFGDLGHAWYVFGKMC 157 (608)
Q Consensus 126 ~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 157 (608)
.. .+..- ...+...+..|+.+-+..+++.-.
T Consensus 94 ~~~~d~~g-~tpL~~A~~~g~~~~v~~Ll~~ga 125 (273)
T 2pnn_A 94 YTDSYYKG-QTALHIAIERRNMTLVTLLVENGA 125 (273)
T ss_dssp CCSTTTTT-CCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred cccccCCC-CCHHHHHHHcCCHHHHHHHHHCCC
Confidence 00 11122 223444456677777777776543
No 325
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=32.79 E-value=95 Score=22.30 Aligned_cols=38 Identities=13% Similarity=0.084 Sum_probs=29.4
Q ss_pred CCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHH
Q 007329 448 KCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEAL 485 (608)
Q Consensus 448 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 485 (608)
.+.+.|.++++.+...++..|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46788888888888888888888888887767655443
No 326
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=31.76 E-value=1.3e+02 Score=21.18 Aligned_cols=60 Identities=15% Similarity=0.153 Sum_probs=35.9
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCChh
Q 007329 217 KEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYM 280 (608)
Q Consensus 217 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 280 (608)
..+++.+.+.|+-.... +..+- ......++|.++++.+..++...|..++.++.+.+...
T Consensus 25 ~~lld~L~~~~vlt~~~-~e~I~---~~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~ 84 (94)
T 2p1h_A 25 SYIMDHMISDGFLTISE-EEKVR---NEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKD 84 (94)
T ss_dssp HHHHHHHHHHTSSCHHH-HHHHH---TSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHCCCCCHHH-HHHHH---cCCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHH
Confidence 34555666655432222 11111 12466777888888887777778888887777766543
No 327
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=31.16 E-value=2.3e+02 Score=23.66 Aligned_cols=20 Identities=15% Similarity=0.280 Sum_probs=13.5
Q ss_pred HHHHHHhCCChHHHHHHHHH
Q 007329 66 RLNELCLNGSLEQALKYLDS 85 (608)
Q Consensus 66 ll~~~~~~~~~~~A~~~~~~ 85 (608)
.+...++.|+.+....+++.
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHhCCHHHHHHHHHh
Confidence 35666677777777666665
No 328
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=30.30 E-value=64 Score=23.24 Aligned_cols=38 Identities=13% Similarity=-0.017 Sum_probs=30.6
Q ss_pred CChhhHHHHHcccCCCCcchHHHHHHHHHhcCChhHHH
Q 007329 144 GDLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEAL 181 (608)
Q Consensus 144 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 181 (608)
...+.|.++++.++.+...+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46788999999998888889999999987767655553
No 329
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=29.14 E-value=2.9e+02 Score=24.12 Aligned_cols=255 Identities=9% Similarity=-0.078 Sum_probs=0.0
Q ss_pred HHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcC-ChhhHHH
Q 007329 241 MYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVG-DEKLGRE 319 (608)
Q Consensus 241 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~ 319 (608)
.+...++-.....+++.+..++...-...+.++.+.| ...+...+..+.. .++...-...+.++...| ..+....
T Consensus 15 ~l~~~~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~-~~~~~~~L~~~l~---d~~~~vR~~A~~aL~~l~~~~~~~~~ 90 (280)
T 1oyz_A 15 GLYNQCKKLNDDELFRLLDDHNSLKRISSARVLQLRG-GQDAVRLAIEFCS---DKNYIRRDIGAFILGQIKICKKCEDN 90 (280)
T ss_dssp HHHHHHHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHC-CHHHHHHHHHHHT---CSSHHHHHHHHHHHHHSCCCTTTHHH
T ss_pred HHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHccC-CchHHHHHHHHHc---CCCHHHHHHHHHHHHHhccccccchH
Q ss_pred HHHHHH-HhCCCCCcccchHHHHHHHhcC------ChHHHHHHHhhCCCCChhhHHHHHHHHHcCCCchHHHHHHHHHHH
Q 007329 320 VHGYVI-KMGFSDDVSVCNPLIKMYLSFG------NREEGEKVFSRMESKDVVSWTTMISCYEGSVLPDKAVETYQMMEA 392 (608)
Q Consensus 320 ~~~~~~-~~~~~~~~~~~~~l~~~~~~~~------~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 392 (608)
++..+. ..--.++..+-...+.++...+ ...-...+...+..++...-...+.++...|+.+..-.+.+.+.
T Consensus 91 l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~- 169 (280)
T 1oyz_A 91 VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLK- 169 (280)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---CCHHHHHHHHT-
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHc-
Q ss_pred CCCCCCHHHHHHHHHHHHccC--ChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCCcccHHH
Q 007329 393 EGSMPDEITIASVLSACACLG--NLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTS 470 (608)
Q Consensus 393 ~g~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 470 (608)
.++...-...+.++...+ ..+....+...+. .++..+-...+.++.+.|+....-.+.+.+.+++ .-..
T Consensus 170 ---d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~----d~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~d~~--vr~~ 240 (280)
T 1oyz_A 170 ---DPNGDVRNWAAFAININKYDNSDIRDCFVEMLQ----DKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKNT--VYDD 240 (280)
T ss_dssp ---CSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTT----CSCHHHHHHHHHHHHHTTCGGGHHHHHHHHTSSS--CCHH
T ss_pred ---CCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhc----CCCHHHHHHHHHHHHHhCCHhhHHHHHHHhcCcc--HHHH
Q ss_pred HHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhc
Q 007329 471 IILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACAR 511 (608)
Q Consensus 471 l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~ 511 (608)
.+.++.+.|. .+++..+.++. .-.++.......+.+..+
T Consensus 241 a~~aL~~i~~-~~~~~~L~~~l-~~~~~~~~~~~~~~~l~~ 279 (280)
T 1oyz_A 241 IIEAAGELGD-KTLLPVLDTML-YKFDDNEIITSAIDKLKR 279 (280)
T ss_dssp HHHHHHHHCC-GGGHHHHHHHH-TTSSCCHHHHHHHHHHTC
T ss_pred HHHHHHhcCc-hhhhHHHHHHH-hcCCCcHHHHHHHHHhhc
No 330
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=29.08 E-value=1.7e+02 Score=23.05 Aligned_cols=61 Identities=10% Similarity=0.051 Sum_probs=37.9
Q ss_pred HHhhcCCCCChhhHHHHHHHhhccC-CchhhhHHHHHHHHhcCCcchhHHhHHHHHhhhcCCh
Q 007329 85 SMQELNICVDEDALVNLVRLCEWKR-GYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFGDL 146 (608)
Q Consensus 85 ~~~~~g~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 146 (608)
.+.+.|.+++..-. .++..+...+ ..-.|.++++.+.+.++..+..|.-.-++.+...|-+
T Consensus 7 ~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 7 ALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 35556766554333 4455555555 6677888888887777666666655556666666644
No 331
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=29.04 E-value=1.9e+02 Score=24.37 Aligned_cols=13 Identities=23% Similarity=0.350 Sum_probs=6.7
Q ss_pred HHHHHHHhCCChH
Q 007329 65 SRLNELCLNGSLE 77 (608)
Q Consensus 65 ~ll~~~~~~~~~~ 77 (608)
+.+...+..|+.+
T Consensus 13 t~L~~A~~~g~~~ 25 (237)
T 3b7b_A 13 SPLHAAAEAGHVD 25 (237)
T ss_dssp CHHHHHHHHTCHH
T ss_pred CHHHHHHHcCcHH
Confidence 3344555556654
No 332
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=28.70 E-value=3.8e+02 Score=25.33 Aligned_cols=177 Identities=12% Similarity=0.047 Sum_probs=87.2
Q ss_pred hHHHHHHHHhCCChHHHHHHHHHHhhcCCCCChh--hHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchh--HHhHHHH
Q 007329 63 PNSRLNELCLNGSLEQALKYLDSMQELNICVDED--ALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVR--LGNAFLS 138 (608)
Q Consensus 63 ~~~ll~~~~~~~~~~~A~~~~~~~~~~g~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~ 138 (608)
..+.+..-++.|+.+-+..+++ .|..++.. .-.+.+...+..|+.+ +.+.+++.|..++.. .....+.
T Consensus 47 ~~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~ga~~~~~~~~g~t~L~ 118 (437)
T 1n11_A 47 VETPLHMAARAGHTEVAKYLLQ----NKAKVNAKAKDDQTPLHCAARIGHTN----MVKLLLENNANPNLATTAGHTPLH 118 (437)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHH----HTCCSSCCCTTSCCHHHHHHHHTCHH----HHHHHHHHTCCTTCCCTTCCCHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHh----CCCCCCCCCCCCCCHHHHHHHCCCHH----HHHHHHhCCCCCCCCCCCCCcHHH
Confidence 3445666677787765544444 45443321 1123344444566654 444456666554422 1223455
Q ss_pred HhhhcCChhhHHHHHcccCCC---CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcch--HHHHHHHhcCCCCh
Q 007329 139 MFVKFGDLGHAWYVFGKMCDR---DLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYT--FPCVLRTCGGVPDL 213 (608)
Q Consensus 139 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~--~~~ll~~~~~~~~~ 213 (608)
..++.|..+-+..+++.-... +...++. +...+..|+.+-+.-+++ .+ ..++... -.+.+...+..|+.
T Consensus 119 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~----~g-~~~~~~~~~g~t~L~~A~~~~~~ 192 (437)
T 1n11_A 119 IAAREGHVETVLALLEKEASQACMTKKGFTP-LHVAAKYGKVRVAELLLE----RD-AHPNAAGKNGLTPLHVAVHHNNL 192 (437)
T ss_dssp HHHHHTCHHHHHHHHHTTCCSCCCCTTSCCH-HHHHHHTTCHHHHHHHHH----TT-CCTTCCCSSCCCHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHhCCCCCcCCCCCCCCH-HHHHHHcCCHHHHHHHHh----CC-CCCCCCCCCCCCHHHHHHHcCCH
Confidence 566788988888888765332 2222223 334456677654443333 33 4443221 11223334445554
Q ss_pred hhHHHHHHHHHHhCCCCchhHH--HHHHHHHHhcCCHHHHHHHHcc
Q 007329 214 KRGKEVHVHVIRFGYEADVDVV--NALITMYVKCGDLVRARLVFDG 257 (608)
Q Consensus 214 ~~a~~~~~~~~~~g~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~ 257 (608)
+ +++.+.+.|..++...+ .+.+...+..|+.+-+..+++.
T Consensus 193 ~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 234 (437)
T 1n11_A 193 D----IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQY 234 (437)
T ss_dssp H----HHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred H----HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 3 44445555554433211 1233344566777766666654
No 333
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=28.21 E-value=1.8e+02 Score=23.21 Aligned_cols=71 Identities=6% Similarity=-0.042 Sum_probs=47.9
Q ss_pred hHHHHHHHHH-HhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHh--cCCcchhHHhHHHHHhhhcCChh
Q 007329 76 LEQALKYLDS-MQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKT--MSHLSVRLGNAFLSMFVKFGDLG 147 (608)
Q Consensus 76 ~~~A~~~~~~-~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~ 147 (608)
.+.+++-+.+ +.+.|.+.+. .=..++..+...+..-.|.++++.+.+. ++..+..|--.-++.+...|-+.
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 3455555544 4566877654 3355677777777888999999999888 77766666555566777776543
No 334
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=28.09 E-value=2.7e+02 Score=23.37 Aligned_cols=15 Identities=13% Similarity=0.222 Sum_probs=7.5
Q ss_pred HhcCCHHHHHHHHcc
Q 007329 243 VKCGDLVRARLVFDG 257 (608)
Q Consensus 243 ~~~g~~~~A~~~~~~ 257 (608)
+..|+.+-+..+++.
T Consensus 85 ~~~~~~~~~~~Ll~~ 99 (237)
T 3b7b_A 85 AKKGHYEVVQYLLSN 99 (237)
T ss_dssp HHTTCHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHhC
Confidence 444555555555543
No 335
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=27.89 E-value=2e+02 Score=22.34 Aligned_cols=59 Identities=3% Similarity=-0.112 Sum_probs=28.0
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCC
Q 007329 390 MEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKC 449 (608)
Q Consensus 390 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 449 (608)
+.+.|++++..-. .++..+...+..-.|.++++.+.+.+...+..+.-.-++.+...|-
T Consensus 13 l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 13 LKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 4455555554332 2223333334445566666666555444444444444455555544
No 336
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=27.63 E-value=1.4e+02 Score=23.32 Aligned_cols=33 Identities=3% Similarity=-0.030 Sum_probs=13.7
Q ss_pred hcCChhHHHHHHHHHHHCCCCCChhHHHHHHHH
Q 007329 275 ENGEYMKGLMLFIMMREVLVDPDFMTLSSVISA 307 (608)
Q Consensus 275 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 307 (608)
..+..-.|.++++.+.+.+...+..|....+..
T Consensus 33 ~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~ 65 (145)
T 2fe3_A 33 NSMAHPTADDIYKALEGKFPNMSVATVYNNLRV 65 (145)
T ss_dssp HCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHH
Confidence 333334444444444444433344443333333
No 337
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=27.56 E-value=1.6e+02 Score=22.58 Aligned_cols=60 Identities=7% Similarity=0.056 Sum_probs=32.7
Q ss_pred HhhcCCCCChhhHHHHHHHhhccC-CchhhhHHHHHHHHhcCCcchhHHhHHHHHhhhcCCh
Q 007329 86 MQELNICVDEDALVNLVRLCEWKR-GYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFGDL 146 (608)
Q Consensus 86 ~~~~g~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 146 (608)
+.+.|.+++..-. .++..+...+ ..-.|.++++.+.+.++..+..|.-.-++.+...|-+
T Consensus 9 l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 9 LRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 4455655443332 3444454444 5666777777777766665555544455555555543
No 338
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=27.13 E-value=1e+02 Score=23.89 Aligned_cols=16 Identities=31% Similarity=0.283 Sum_probs=8.4
Q ss_pred HHhcCChhHHHHHHHH
Q 007329 171 YAKAGFFDEALSLYQR 186 (608)
Q Consensus 171 ~~~~g~~~~a~~~~~~ 186 (608)
.++.|+.+.+..+++.
T Consensus 9 A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 9 AAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHTCHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHh
Confidence 3445555555555544
No 339
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=26.94 E-value=2e+02 Score=22.59 Aligned_cols=39 Identities=8% Similarity=0.151 Sum_probs=16.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHH
Q 007329 269 MISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISA 307 (608)
Q Consensus 269 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 307 (608)
++..+...+..-.|.++++.+.+.+...+..|.-..+..
T Consensus 32 IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~ 70 (150)
T 2xig_A 32 VVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNF 70 (150)
T ss_dssp HHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHH
Confidence 333333344444455555555444434444443333333
No 340
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=25.68 E-value=4.7e+02 Score=25.37 Aligned_cols=22 Identities=9% Similarity=0.060 Sum_probs=10.7
Q ss_pred hhHHHHHHHhhccCCchhhhHH
Q 007329 96 DALVNLVRLCEWKRGYDEGLYL 117 (608)
Q Consensus 96 ~~~~~ll~~~~~~~~~~~a~~~ 117 (608)
..|..-...+...|++++|-++
T Consensus 362 ~L~~~~F~~l~~~g~y~~AA~~ 383 (494)
T 1bpo_A 362 ELFARKFNALFAQGNYSEAAKV 383 (494)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHH
Confidence 3344444445555555555444
No 341
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=24.86 E-value=2.3e+02 Score=26.45 Aligned_cols=124 Identities=15% Similarity=0.133 Sum_probs=0.0
Q ss_pred hHHHHHHHhcCChHHHHHHHhhCCCCC---hhhHHHHHHHHHcCCCc--hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 007329 337 NPLIKMYLSFGNREEGEKVFSRMESKD---VVSWTTMISCYEGSVLP--DKAVETYQMMEAEGSMPDEITIASVLSACAC 411 (608)
Q Consensus 337 ~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~--~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 411 (608)
..++.-|...|+.++|...++++..|+ ......++......++. +.+..++..+...|+-+.......+...+..
T Consensus 16 ~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf~~lle~ 95 (364)
T 3l6a_A 16 ETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLNVLDQ 95 (364)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhh
Q ss_pred cC----ChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccC
Q 007329 412 LG----NLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQI 460 (608)
Q Consensus 412 ~~----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 460 (608)
.. +...|..++..+...-+.-+......+...+...+...-...+++.+
T Consensus 96 l~Dl~iDiP~a~~~la~f~ar~i~~~~l~~~~l~~~l~~G~~~~l~l~vl~~~ 148 (364)
T 3l6a_A 96 CPKLEVDIPLVKSYLAQFAARAIISELVSISELAQPLESGTHFPLFLLCLQQL 148 (364)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHTTSSCHHHHHHHHGGGTTTTHHHHHHHHH
T ss_pred ChHhccccccHHHHHHHHHHHHHHcCCCCHHHHHHHhcccchHHHHHHHHHHH
No 342
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=24.62 E-value=1.9e+02 Score=20.40 Aligned_cols=60 Identities=13% Similarity=0.079 Sum_probs=35.9
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCch
Q 007329 419 IKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSF 482 (608)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 482 (608)
..+++.+.+.|+-. ..-+..+. ......++|.++++.+...+...|..++.++.+.+...
T Consensus 25 ~~lld~L~~~~vlt-~~~~e~I~---~~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~ 84 (94)
T 2p1h_A 25 SYIMDHMISDGFLT-ISEEEKVR---NEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKD 84 (94)
T ss_dssp HHHHHHHHHHTSSC-HHHHHHHH---TSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHCCCCC-HHHHHHHH---cCCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHH
Confidence 34555566555332 22222222 13567778888888887777777777777777766533
No 343
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=24.53 E-value=3.1e+02 Score=23.37 Aligned_cols=53 Identities=11% Similarity=0.040 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHhcCCCCC-CcchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCc
Q 007329 178 DEALSLYQRMFWVGGVKP-DVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEAD 231 (608)
Q Consensus 178 ~~a~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 231 (608)
+.+.++|..|...+ +-- -...|......+...|++.+|.++|+.-++.+-.|-
T Consensus 131 ~~p~~if~~L~~~~-IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHH-IGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTT-CSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CCHHHHHHHHHHCC-cchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 56667777777766 433 333455556666677778888888777777776663
No 344
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=23.52 E-value=5.1e+02 Score=25.09 Aligned_cols=87 Identities=11% Similarity=0.077 Sum_probs=47.5
Q ss_pred ccchHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007329 334 SVCNPLIKMYLSFGNREEGEKVFSRMES---KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACA 410 (608)
Q Consensus 334 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 410 (608)
..|..-.+.+...|++++|.++--.... ++..|.+.+-..-...|+..-.+.+|..+.+.| +.+..--.-+++.-.
T Consensus 362 ~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~Ln~~ESlEl~r~vL 440 (494)
T 1bpo_A 362 ELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLNKYESLELCRPVL 440 (494)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-ccchHHhhHHhHHHH
Confidence 3344445566677788877777666554 444455444443344566666666777776665 334433333444444
Q ss_pred ccCChHHHHHH
Q 007329 411 CLGNLDLGIKL 421 (608)
Q Consensus 411 ~~~~~~~a~~~ 421 (608)
..|+.+..+.+
T Consensus 441 ~q~r~~llekW 451 (494)
T 1bpo_A 441 QQGRKQLLEKW 451 (494)
T ss_dssp HTTCHHHHHHH
T ss_pred hccHHHHHHHH
Confidence 55555444443
No 345
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=23.38 E-value=3.2e+02 Score=22.73 Aligned_cols=16 Identities=13% Similarity=-0.101 Sum_probs=8.5
Q ss_pred hhhcCChhhHHHHHcc
Q 007329 140 FVKFGDLGHAWYVFGK 155 (608)
Q Consensus 140 ~~~~g~~~~A~~~~~~ 155 (608)
.++.|+.+....+++.
T Consensus 10 A~~~g~~~~v~~Ll~~ 25 (232)
T 2rfa_A 10 AAKENDVQALSKLLKF 25 (232)
T ss_dssp HHHTTCHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHh
Confidence 3445555555555554
No 346
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=22.35 E-value=2.1e+02 Score=23.84 Aligned_cols=44 Identities=23% Similarity=0.198 Sum_probs=25.1
Q ss_pred HHHHHHHHHhc--CCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 550 MKPAWNQFNSN--ERDVS-------AWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 550 ~~~A~~~~~~~--~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
++.|+.+|+.+ .-|.. .=...+..|.+.|.+++|.++|++....
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcC
Confidence 45666677666 11210 1123445577888888888888876544
No 347
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=22.27 E-value=1.2e+02 Score=23.25 Aligned_cols=47 Identities=6% Similarity=-0.076 Sum_probs=28.1
Q ss_pred HHHHHHHhCCChHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccCCc
Q 007329 65 SRLNELCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGY 111 (608)
Q Consensus 65 ~ll~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~ 111 (608)
.++..+...+..-.|.++++.+.+.+...+..|....|..+...|-+
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 34555555556666777777776666555666655556655555543
No 348
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=22.19 E-value=2.9e+02 Score=21.66 Aligned_cols=62 Identities=8% Similarity=0.034 Sum_probs=39.4
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCH
Q 007329 388 QMMEAEGSMPDEITIASVLSACACLG-NLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCI 450 (608)
Q Consensus 388 ~~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 450 (608)
+.+.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 346667777776544 3344455555 5667888888888776666666555556666666644
No 349
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=22.15 E-value=4.5e+02 Score=23.90 Aligned_cols=29 Identities=14% Similarity=0.139 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 007329 566 AWNILLTGYAERGQGALAEEFFRKMIDSK 594 (608)
Q Consensus 566 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 594 (608)
+...-+....+.+++.-|..+.+++++.+
T Consensus 200 aLr~AM~~a~K~KNy~tAa~fArrLLel~ 228 (320)
T 3mkr_B 200 VLRTALNLFFKLKNFRTAAAFARRLLELG 228 (320)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 44455555666666666666666666653
No 350
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=22.12 E-value=3.1e+02 Score=21.98 Aligned_cols=48 Identities=8% Similarity=0.168 Sum_probs=30.4
Q ss_pred HhcCCHHHHHHHHHhc-----CC--CHHHHHHHHH-H-----HHhcCCHHHHHHHHHHHHH
Q 007329 545 VRCGRMKPAWNQFNSN-----ER--DVSAWNILLT-G-----YAERGQGALAEEFFRKMID 592 (608)
Q Consensus 545 ~~~g~~~~A~~~~~~~-----~~--~~~~~~~l~~-~-----~~~~g~~~~A~~~~~~m~~ 592 (608)
...|++-+|-++++.. .+ +...|..||. . ..+.|+...|..++++...
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3447777777777776 22 3445666665 2 3456788888887777755
No 351
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=21.89 E-value=4.5e+02 Score=23.87 Aligned_cols=141 Identities=16% Similarity=0.018 Sum_probs=79.8
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHhhc-C----CCCChhhHHHH---HHHhhccCCchhhhHHHHHHHHhcCCcchhHHhH
Q 007329 64 NSRLNELCLNGSLEQALKYLDSMQEL-N----ICVDEDALVNL---VRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNA 135 (608)
Q Consensus 64 ~~ll~~~~~~~~~~~A~~~~~~~~~~-g----~~~~~~~~~~l---l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 135 (608)
+.+...+.-.-+-++|...|..+... + ..|+....... +..+.+.-+ -+++..+.+.|+.|...+..-
T Consensus 153 ~~i~a~ll~~~~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~----p~L~~hL~~~~i~~~~~~~~W 228 (331)
T 3qye_A 153 SFVAGILLLHMSEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYH----RDLYNHLEEHEIGPSLYAAPW 228 (331)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHC----HHHHHHHHHTTCCGGGTSHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCChHHHHHHH
Confidence 44444444444677899988887643 2 23343222221 222222222 357777888899988888888
Q ss_pred HHHHhhhcCChhhHHHHHcccCC-CCcchHHH---HHH----HHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHh
Q 007329 136 FLSMFVKFGDLGHAWYVFGKMCD-RDLFSWNV---LIG----GYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTC 207 (608)
Q Consensus 136 l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~---li~----~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~ 207 (608)
++..+++.=.++.+.++++.+.. .....+.. ++. ...+..++++.++++..... ..+......++.-.
T Consensus 229 ~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~p----~~~~~di~~li~~A 304 (331)
T 3qye_A 229 FLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLP----NLGLVQMEKTINQV 304 (331)
T ss_dssp HHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTTT----CCCHHHHHHHHHHH
T ss_pred HHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCC----CCCHHHHHHHHHHH
Confidence 88888888789999999998732 22222211 111 12233577777777776321 22334555556554
Q ss_pred cCCCC
Q 007329 208 GGVPD 212 (608)
Q Consensus 208 ~~~~~ 212 (608)
.....
T Consensus 305 ~~l~~ 309 (331)
T 3qye_A 305 FEMDI 309 (331)
T ss_dssp HHCCC
T ss_pred HhCCc
Confidence 44443
No 352
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=21.73 E-value=4.7e+02 Score=23.97 Aligned_cols=60 Identities=15% Similarity=0.241 Sum_probs=32.2
Q ss_pred hHHHHHHHhcCChHHHHHHHhhCCCCCh---hhHHHHHHHHHcCC-CchHHHHHHHHHHHCCCC
Q 007329 337 NPLIKMYLSFGNREEGEKVFSRMESKDV---VSWTTMISCYEGSV-LPDKAVETYQMMEAEGSM 396 (608)
Q Consensus 337 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~ 396 (608)
..++.-|...|+.++|...++++..|.. .....+..++-+.. ..+.+..++..+.+.|+-
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~i 78 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHL 78 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCC
Confidence 4566777777788888888877776532 12222222222211 124455566666665544
No 353
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=21.54 E-value=1.2e+02 Score=26.54 Aligned_cols=17 Identities=0% Similarity=-0.128 Sum_probs=9.8
Q ss_pred HhcCCHHHHHHHHccCC
Q 007329 445 SKCKCIDKALEVFHQIP 461 (608)
Q Consensus 445 ~~~g~~~~A~~~~~~~~ 461 (608)
+..|+.+-+..+++.-.
T Consensus 109 ~~~g~~~~v~~Ll~~ga 125 (273)
T 2pnn_A 109 IERRNMTLVTLLVENGA 125 (273)
T ss_dssp HHTTCHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHCCC
Confidence 44566666666666543
No 354
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=21.48 E-value=4.7e+02 Score=23.94 Aligned_cols=92 Identities=11% Similarity=-0.041 Sum_probs=49.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHccCCCCC---HhHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCChhH---HHHHHHHH
Q 007329 236 NALITMYVKCGDLVRARLVFDGMPKRD---RISWNAMISGYFENG-EYMKGLMLFIMMREVLVDPDFMT---LSSVISAS 308 (608)
Q Consensus 236 ~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~---~~~ll~~~ 308 (608)
..++.-|...|+.++|.+.++++..|. ......+..++-+.. ..+.+..++..+.+.|+-+.... |..++..+
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~~~~l 94 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEILELA 94 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhC
Confidence 567777888889999999998887663 122222222222211 23455666777766655433332 33333333
Q ss_pred hhc-CChhhHHHHHHHHHHh
Q 007329 309 ELV-GDEKLGREVHGYVIKM 327 (608)
Q Consensus 309 ~~~-~~~~~a~~~~~~~~~~ 327 (608)
... =+...|...+..+...
T Consensus 95 ~Dl~lDiP~a~~~La~~v~~ 114 (339)
T 1ug3_A 95 EDMEIDIPHVWLYLAELVTP 114 (339)
T ss_dssp HHHTTTCTTHHHHHHHHHGG
T ss_pred hHhhcCccchHHHHHHHHHH
Confidence 222 2455555555555443
No 355
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=20.98 E-value=3e+02 Score=21.51 Aligned_cols=60 Identities=12% Similarity=0.042 Sum_probs=29.1
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCH
Q 007329 390 MEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCI 450 (608)
Q Consensus 390 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 450 (608)
+.+.|++++..-. .++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-+
T Consensus 18 l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 18 IKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 4455555444332 23333334444556666666666555455554444445555555543
No 356
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=20.85 E-value=2.1e+02 Score=21.78 Aligned_cols=45 Identities=18% Similarity=0.028 Sum_probs=26.1
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 007329 370 MISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGN 414 (608)
Q Consensus 370 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 414 (608)
++..+...+..-.|.++++.+.+.+...+..|.-..|..+...|-
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 344444455556666777777666655566665555555555543
No 357
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=20.74 E-value=1.8e+02 Score=22.45 Aligned_cols=47 Identities=15% Similarity=0.245 Sum_probs=33.1
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 007329 202 CVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDL 248 (608)
Q Consensus 202 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 248 (608)
.++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-+
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 45556666666677888888888877667777666667777777654
No 358
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=20.56 E-value=2e+02 Score=19.38 Aligned_cols=60 Identities=7% Similarity=0.011 Sum_probs=34.1
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCC
Q 007329 389 MMEAEGSMPDEITIASVLSACACLG-NLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKC 449 (608)
Q Consensus 389 ~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 449 (608)
.+.+.|++.+..-. .++..+...+ ..-.+.++++.+.+.+...+..+....+..+.+.|-
T Consensus 7 ~l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 7 ALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 35566766665443 4445555443 455667777777666555555555555555555543
No 359
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=20.20 E-value=2.2e+02 Score=22.17 Aligned_cols=30 Identities=7% Similarity=-0.071 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHHHCCCCCChhHHHHHHHHH
Q 007329 279 YMKGLMLFIMMREVLVDPDFMTLSSVISAS 308 (608)
Q Consensus 279 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 308 (608)
.-.|.++++.+.+.+...+..|.-..|..+
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L 62 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELL 62 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHH
Confidence 344555555555444444444433333333
Done!