BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007330
(607 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 86/195 (44%), Gaps = 20/195 (10%)
Query: 201 RRASFPVSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAI 260
R AS P I ++ L +H G+FD L L+ L + G N + A+
Sbjct: 30 RHASVPAGIPTNAQI--LYLHDNQITKLE--PGVFDSLINLKELYL------GSNQLGAL 79
Query: 261 PKEK-EKLVHLRYLKLSLLMREELPDIVCE-LFNLQTLEVEHCPRLKRLPQGIGKLVNLR 318
P + L L L L LP V + L +L+ L + C +L LP+GI +L +L
Sbjct: 80 PVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM-CCNKLTELPRGIERLTHLT 138
Query: 319 HLIYYYSNLDYMPKG-FERLTCLRTLTEFVVSGGKYSGKACNIEGLRH--LNHLGGVFRI 375
HL + L +P G F+RL+ +LT + G + + +I LR+ +H R
Sbjct: 139 HLALDQNQLKSIPHGAFDRLS---SLTHAYLFGNPWDCECRDIMYLRNWVADHTSIAMRW 195
Query: 376 TGLGNVTDVDEAENA 390
G V D D A+ A
Sbjct: 196 DGKA-VNDPDSAKCA 209
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 66/117 (56%), Gaps = 14/117 (11%)
Query: 231 LQGLFDYLTCLRALKITGKVSWGQNSIYAIPKEKEKLVHLRYLKLSLLMREELPDIVCE- 289
+QG+ YL +R L + G N ++ I KE L +L YL L+ + LP+ V +
Sbjct: 56 VQGI-QYLPNVRYLALGG------NKLHDISALKE-LTNLTYLILTGNQLQSLPNGVFDK 107
Query: 290 LFNLQTLE-VEHCPRLKRLPQGI-GKLVNLRHLIYYYSNLDYMPKG-FERLTCLRTL 343
L NL+ L VE+ +L+ LP G+ KL NL +L Y++ L +PKG F++LT L L
Sbjct: 108 LTNLKELVLVEN--QLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRL 162
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 38.1 bits (87), Expect = 0.016, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 265 EKLVHLRYLKLSLLMREELPDIVCELFNLQTLEVEHCPRLKRLPQGI-GKLVNLRHLIYY 323
+KL L L LS + LPD V + T+ H +L+ LP G+ KL L+ L
Sbjct: 49 DKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD 108
Query: 324 YSNLDYMPKG-FERLTCLRTL 343
+ L +P G F+RLT L+ +
Sbjct: 109 TNQLKSVPDGIFDRLTSLQKI 129
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 55/140 (39%), Gaps = 18/140 (12%)
Query: 426 HSNLVALDILGFK--GKITFPKWIMSLNNLKSLHLRSCEKCEILSPLGKLPSLETLYIAG 483
H LV L L + G + P I +L NLKSL +R+ + + LP LE L + G
Sbjct: 179 HQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRG 238
Query: 484 MSGKRVGDEFFGIGSDCNIAFPKLKFLRVVDMFEWEEWGFGITRSNVKEDVMVMPCLNYL 543
+ R FG + LK L + D I R + L L
Sbjct: 239 CTALRNYPPIFGGRA-------PLKRLILKDCSNLLTLPLDIHR---------LTQLEKL 282
Query: 544 DIQFCFKLKALPGYLLEITA 563
D++ C L LP + ++ A
Sbjct: 283 DLRGCVNLSRLPSLIAQLPA 302
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 9/93 (9%)
Query: 260 IPKEKEKLVHLRYLKLSLLMREELPDIVCELFNLQTLEVEHCPRLKRLPQGIGK------ 313
+P ++ L L L+ LP + L L+ L + CP L LP+ +
Sbjct: 119 LPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178
Query: 314 ---LVNLRHLIYYYSNLDYMPKGFERLTCLRTL 343
LVNL+ L ++ + +P L L++L
Sbjct: 179 HQGLVNLQSLRLEWTGIRSLPASIANLQNLKSL 211
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 261 PKEKEKLVHLRYLKLSLLMREELPDIVCELFNLQTLEVEHCPRLKRLPQGIGKLVNLRHL 320
P + +L HL++ + ELPD + L+TL + P L+ LP I L LR L
Sbjct: 97 PDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNP-LRALPASIASLNRLREL 155
>pdb|1CK6|A Chain A, Binding Mode Of Salicylhydroxamic Acid To Arthromyces
Ramosus Peroxidase
pdb|1C8I|A Chain A, Binding Mode Of Hydroxylamine To Arthromyces Ramosus
Peroxidase
pdb|1ARP|A Chain A, Crystal Structure Of The Fungal Peroxidase From
Arthromyces Ramosus At 1.9 Angstroms Resolution:
Structural Comparisons With The Lignin And Cytochrome C
Peroxidases
pdb|1ARU|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1ARV|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1ARW|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1ARX|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1ARY|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1GZA|A Chain A, Peroxidase
pdb|1GZB|A Chain A, Peroxidase
pdb|1HSR|A Chain A, Binding Mode Of Benzhydroxamic Acid To Arthromyces Ramosus
Peroxidase
pdb|2E3B|A Chain A, Crystal Structure Of The Ha-Bound Form Of Arthromyces
Ramosus Peroxidase At 1.3 Angstroms Resolution
pdb|2E3A|A Chain A, Crystal Structure Of The No-Bound Form Of Arthromyces
Ramosus Peroxidase At 1.3 Angstroms Resolution
pdb|2E39|A Chain A, Crystal Structure Of The Cn-Bound Form Of Arthromyces
Ramosus Peroxidase At 1.3 Angstroms Resolution
Length = 344
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 217 SLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWG 253
S++ HS E++F GL D + LRA+ I VS+G
Sbjct: 79 SIIAHSNIELAFPANGGLTDTIEALRAVGINHGVSFG 115
>pdb|1LYK|A Chain A, The Impact Of The Physical And Chemical Enviroment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
pdb|1LYK|B Chain B, The Impact Of The Physical And Chemical Enviroment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
Length = 343
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 217 SLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWG 253
S++ HS E++F GL D + LRA+ I VS+G
Sbjct: 78 SIIAHSNIELAFPANGGLTDTVEALRAVGINHGVSFG 114
>pdb|1LY9|A Chain A, The Impact Of The Physical And Chemical Environment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
pdb|1LY9|B Chain B, The Impact Of The Physical And Chemical Environment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
pdb|1LYC|A Chain A, The Impact Of The Physical And Chemical Enviroment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
pdb|1LYC|B Chain B, The Impact Of The Physical And Chemical Enviroment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
Length = 343
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 217 SLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWG 253
S++ HS E++F GL D + LRA+ I VS+G
Sbjct: 78 SIIAHSNIELAFPANGGLTDTVEALRAVGINHGVSFG 114
>pdb|1H3J|A Chain A, Structure Of Recombinant Coprinus Cinereus Peroxidase
Determined To 2.0 A
pdb|1H3J|B Chain B, Structure Of Recombinant Coprinus Cinereus Peroxidase
Determined To 2.0 A
Length = 342
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 217 SLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWG 253
S++ HS E++F GL D + LRA+ I VS+G
Sbjct: 77 SIIAHSNIELAFPANGGLTDTVEALRAVGINHGVSFG 113
>pdb|1LY8|A Chain A, The Crystal Structure Of A Mutant Enzyme Of Coprinus
Cinereus Peroxidase Provides An Understanding Of Its
Increased Thermostability And Insight Into Modelling Of
Protein Structures
pdb|1LY8|B Chain B, The Crystal Structure Of A Mutant Enzyme Of Coprinus
Cinereus Peroxidase Provides An Understanding Of Its
Increased Thermostability And Insight Into Modelling Of
Protein Structures
Length = 343
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 217 SLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWG 253
S++ HS E++F GL D + LRA+ I VS+G
Sbjct: 78 SIIAHSNIELAFPANGGLTDTVEALRAVGINHGVSFG 114
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Query: 267 LVHLRYLKLSLLMREELPDIVC--ELFNLQTLEVEHCPRLKRLPQGI-GKLVNLRHLIYY 323
L ++RYL L +L DI EL NL L + +L+ LP G+ KL NL+ L+
Sbjct: 62 LPNVRYLALG---GNKLHDISALKELTNLTYL-ILTGNQLQSLPNGVFDKLTNLKELVLV 117
Query: 324 YSNLDYMPKG-FERLTCLRTL 343
+ L +P G F++LT L L
Sbjct: 118 ENQLQSLPDGVFDKLTNLTYL 138
>pdb|3V9F|A Chain A, Crystal Structure Of The Extracellular Domain Of The
Putative Hybrid Two Component System Bt3049 From B.
Thetaiotaomicron
pdb|3V9F|B Chain B, Crystal Structure Of The Extracellular Domain Of The
Putative Hybrid Two Component System Bt3049 From B.
Thetaiotaomicron
pdb|3V9F|C Chain C, Crystal Structure Of The Extracellular Domain Of The
Putative Hybrid Two Component System Bt3049 From B.
Thetaiotaomicron
pdb|3V9F|D Chain D, Crystal Structure Of The Extracellular Domain Of The
Putative Hybrid Two Component System Bt3049 From B.
Thetaiotaomicron
Length = 781
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 34 LHKFGNLLCLRRARKERGSSILDIEMGKLNELENDPLAPLL 74
L+KF + ++E+ SS+ I +LNE+ DP+ P++
Sbjct: 40 LNKFDGTRFITYYKEEQSSSVQSITGNELNEVYTDPVQPVI 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.141 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,730,392
Number of Sequences: 62578
Number of extensions: 738811
Number of successful extensions: 1341
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1322
Number of HSP's gapped (non-prelim): 20
length of query: 607
length of database: 14,973,337
effective HSP length: 104
effective length of query: 503
effective length of database: 8,465,225
effective search space: 4258008175
effective search space used: 4258008175
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)