Query 007330
Match_columns 607
No_of_seqs 362 out of 3547
Neff 10.3
Searched_HMMs 46136
Date Thu Mar 28 22:06:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007330.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007330hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.5E-58 3.3E-63 500.9 18.4 341 1-350 325-677 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.5E-49 3.3E-54 454.8 26.4 509 1-578 359-909 (1153)
3 KOG0444 Cytoskeletal regulator 99.9 2.9E-29 6.4E-34 247.4 -7.5 341 190-577 32-377 (1255)
4 PLN00113 leucine-rich repeat r 99.9 4.4E-26 9.6E-31 262.0 15.5 329 238-605 139-489 (968)
5 PLN00113 leucine-rich repeat r 99.9 7.1E-26 1.5E-30 260.3 15.2 371 189-605 117-513 (968)
6 KOG0444 Cytoskeletal regulator 99.9 4.9E-26 1.1E-30 224.8 -5.1 342 190-576 7-353 (1255)
7 PLN03210 Resistant to P. syrin 99.9 2.1E-22 4.5E-27 231.7 18.0 156 394-576 776-944 (1153)
8 KOG4194 Membrane glycoprotein 99.9 1.3E-23 2.8E-28 206.5 2.5 132 422-569 312-446 (873)
9 KOG0472 Leucine-rich repeat pr 99.9 2.3E-24 4.9E-29 202.8 -5.1 343 189-573 67-539 (565)
10 KOG4194 Membrane glycoprotein 99.9 5.8E-23 1.3E-27 201.9 4.0 344 189-574 77-428 (873)
11 KOG0472 Leucine-rich repeat pr 99.9 1.3E-24 2.8E-29 204.4 -10.4 349 189-572 44-468 (565)
12 KOG0618 Serine/threonine phosp 99.8 8.7E-21 1.9E-25 196.5 -5.0 86 240-332 46-131 (1081)
13 KOG0618 Serine/threonine phosp 99.7 4.5E-19 9.8E-24 184.0 -2.8 349 192-574 47-488 (1081)
14 PF00931 NB-ARC: NB-ARC domain 99.7 1.8E-18 3.8E-23 170.4 -2.0 113 5-118 169-285 (287)
15 PRK15387 E3 ubiquitin-protein 99.6 8.9E-16 1.9E-20 164.5 13.0 77 240-332 223-299 (788)
16 PRK15370 E3 ubiquitin-protein 99.6 1.4E-15 3.1E-20 164.1 8.0 82 240-334 179-260 (754)
17 PRK15370 E3 ubiquitin-protein 99.6 4.3E-15 9.3E-20 160.4 9.9 82 240-334 200-281 (754)
18 KOG0617 Ras suppressor protein 99.6 4.9E-17 1.1E-21 136.0 -4.5 151 254-472 42-194 (264)
19 PRK15387 E3 ubiquitin-protein 99.5 6.3E-14 1.4E-18 150.5 12.9 254 192-549 203-456 (788)
20 KOG0617 Ras suppressor protein 99.5 2E-16 4.4E-21 132.3 -4.8 160 189-361 32-193 (264)
21 KOG4658 Apoptotic ATPase [Sign 99.5 3.9E-14 8.4E-19 155.4 5.2 323 209-572 519-856 (889)
22 KOG4237 Extracellular matrix p 99.4 5.2E-15 1.1E-19 140.0 -2.8 134 200-344 56-194 (498)
23 cd00116 LRR_RI Leucine-rich re 99.3 5.6E-13 1.2E-17 133.6 0.1 40 263-302 76-119 (319)
24 cd00116 LRR_RI Leucine-rich re 99.2 3.4E-12 7.3E-17 128.0 2.5 272 233-515 17-317 (319)
25 KOG4237 Extracellular matrix p 99.1 2.1E-12 4.5E-17 122.6 -3.6 273 189-485 66-357 (498)
26 KOG0532 Leucine-rich repeat (L 99.1 7.3E-12 1.6E-16 124.3 -3.4 213 194-462 54-271 (722)
27 COG4886 Leucine-rich repeat (L 99.0 5.6E-10 1.2E-14 115.2 5.2 107 235-351 112-219 (394)
28 KOG0532 Leucine-rich repeat (L 98.9 4.5E-11 9.8E-16 118.8 -4.1 189 242-484 78-270 (722)
29 PF14580 LRR_9: Leucine-rich r 98.9 1.2E-09 2.5E-14 96.5 3.9 132 208-350 14-152 (175)
30 KOG4341 F-box protein containi 98.8 2.6E-10 5.7E-15 109.5 -2.0 307 239-599 138-457 (483)
31 KOG3207 Beta-tubulin folding c 98.8 1.1E-09 2.4E-14 105.9 1.1 220 257-547 110-335 (505)
32 PF14580 LRR_9: Leucine-rich r 98.8 4E-09 8.7E-14 93.0 4.0 122 189-322 18-147 (175)
33 COG4886 Leucine-rich repeat (L 98.8 4.5E-09 9.7E-14 108.5 4.8 193 243-487 97-290 (394)
34 KOG1259 Nischarin, modulator o 98.7 1.9E-09 4.1E-14 99.1 0.4 37 313-352 282-318 (490)
35 KOG1259 Nischarin, modulator o 98.6 7E-09 1.5E-13 95.4 -0.4 130 209-353 280-411 (490)
36 KOG4341 F-box protein containi 98.6 3.2E-09 6.8E-14 102.2 -3.6 305 213-567 138-457 (483)
37 KOG3207 Beta-tubulin folding c 98.5 3.5E-08 7.5E-13 95.7 2.0 150 189-344 120-277 (505)
38 PF13855 LRR_8: Leucine rich r 98.4 3E-07 6.4E-12 66.4 4.4 58 239-302 1-60 (61)
39 KOG1909 Ran GTPase-activating 98.4 3.4E-07 7.3E-12 86.6 4.3 125 386-516 175-309 (382)
40 KOG0531 Protein phosphatase 1, 98.3 8.3E-08 1.8E-12 99.2 -1.4 127 211-352 70-197 (414)
41 KOG2120 SCF ubiquitin ligase, 98.3 2.9E-08 6.3E-13 91.4 -4.5 90 391-485 255-349 (419)
42 KOG1909 Ran GTPase-activating 98.3 2.6E-07 5.6E-12 87.3 1.5 257 207-486 24-310 (382)
43 PLN03150 hypothetical protein; 98.3 1.1E-06 2.5E-11 95.1 6.6 91 240-336 419-512 (623)
44 PLN03150 hypothetical protein; 98.2 2.2E-06 4.8E-11 92.9 7.9 83 269-354 419-503 (623)
45 KOG0531 Protein phosphatase 1, 98.2 1.1E-07 2.3E-12 98.5 -2.2 127 192-330 74-201 (414)
46 PF12799 LRR_4: Leucine Rich r 98.2 1.1E-06 2.4E-11 58.0 3.3 40 268-308 1-40 (44)
47 PF13855 LRR_8: Leucine rich r 98.2 1.2E-06 2.7E-11 63.2 3.6 60 213-280 1-61 (61)
48 PRK15386 type III secretion pr 98.0 3.7E-05 7.9E-10 76.6 10.1 65 235-310 48-113 (426)
49 PF12799 LRR_4: Leucine Rich r 98.0 6.5E-06 1.4E-10 54.3 3.2 41 239-285 1-41 (44)
50 KOG4579 Leucine-rich repeat (L 97.9 3.2E-06 6.9E-11 69.1 1.3 92 235-333 49-141 (177)
51 KOG3665 ZYG-1-like serine/thre 97.9 6.5E-06 1.4E-10 89.0 2.5 131 189-327 121-262 (699)
52 KOG1859 Leucine-rich repeat pr 97.8 6.8E-07 1.5E-11 92.2 -5.0 93 254-352 173-265 (1096)
53 PRK15386 type III secretion pr 97.8 8.7E-05 1.9E-09 74.0 9.2 77 391-485 47-123 (426)
54 KOG2120 SCF ubiquitin ligase, 97.8 1.4E-06 3E-11 80.6 -3.8 19 389-407 227-245 (419)
55 KOG3665 ZYG-1-like serine/thre 97.6 5.1E-05 1.1E-09 82.2 3.8 136 212-353 121-262 (699)
56 KOG2982 Uncharacterized conser 97.5 0.00014 3.1E-09 67.6 5.8 86 233-328 65-159 (418)
57 KOG2982 Uncharacterized conser 97.4 5.5E-05 1.2E-09 70.3 1.6 67 449-521 197-265 (418)
58 KOG1859 Leucine-rich repeat pr 97.4 7E-06 1.5E-10 85.0 -5.5 131 189-331 163-295 (1096)
59 KOG4579 Leucine-rich repeat (L 97.4 4.4E-05 9.5E-10 62.6 0.0 95 208-311 48-142 (177)
60 KOG2123 Uncharacterized conser 97.2 4.3E-05 9.3E-10 70.3 -2.2 100 211-321 17-123 (388)
61 COG5238 RNA1 Ran GTPase-activa 97.1 0.00054 1.2E-08 63.1 4.1 44 287-330 88-135 (388)
62 KOG1644 U2-associated snRNP A' 96.9 0.00086 1.9E-08 59.1 3.8 82 235-323 60-148 (233)
63 KOG2123 Uncharacterized conser 96.7 6.1E-05 1.3E-09 69.3 -5.1 59 425-485 39-99 (388)
64 KOG1644 U2-associated snRNP A' 96.5 0.0041 8.9E-08 55.0 5.0 88 421-515 58-150 (233)
65 KOG2739 Leucine-rich acidic nu 96.5 0.0013 2.8E-08 60.6 1.9 60 266-326 63-127 (260)
66 PF00560 LRR_1: Leucine Rich R 96.2 0.0018 3.9E-08 35.4 0.8 17 270-286 2-18 (22)
67 KOG1947 Leucine rich repeat pr 96.2 0.00056 1.2E-08 72.8 -2.5 34 267-300 187-223 (482)
68 COG5238 RNA1 Ran GTPase-activa 96.0 0.0024 5.2E-08 58.9 0.8 252 264-553 26-317 (388)
69 KOG2739 Leucine-rich acidic nu 95.8 0.0052 1.1E-07 56.7 2.2 85 265-351 40-126 (260)
70 PF00560 LRR_1: Leucine Rich R 95.6 0.0049 1.1E-07 33.6 0.8 21 292-313 1-21 (22)
71 KOG3864 Uncharacterized conser 94.8 0.0022 4.8E-08 56.6 -3.4 84 453-550 103-188 (221)
72 KOG3864 Uncharacterized conser 94.7 0.0027 5.8E-08 56.1 -3.2 67 503-576 123-190 (221)
73 KOG1947 Leucine rich repeat pr 94.6 0.0041 8.9E-08 66.1 -2.6 171 391-579 183-368 (482)
74 KOG0473 Leucine-rich repeat pr 94.3 0.0033 7.1E-08 56.7 -3.5 84 235-325 38-121 (326)
75 PF13504 LRR_7: Leucine rich r 94.2 0.027 5.9E-07 28.4 1.2 13 270-282 3-15 (17)
76 KOG0473 Leucine-rich repeat pr 94.0 0.0043 9.2E-08 56.0 -3.4 87 257-344 30-117 (326)
77 PF13504 LRR_7: Leucine rich r 93.6 0.042 9E-07 27.7 1.2 17 291-308 1-17 (17)
78 PF13306 LRR_5: Leucine rich r 93.4 0.15 3.3E-06 42.8 5.2 100 208-321 7-109 (129)
79 PF13306 LRR_5: Leucine rich r 91.7 0.84 1.8E-05 38.2 7.6 32 449-482 33-66 (129)
80 smart00369 LRR_TYP Leucine-ric 90.8 0.21 4.5E-06 28.4 2.0 19 268-286 2-20 (26)
81 smart00370 LRR Leucine-rich re 90.8 0.21 4.5E-06 28.4 2.0 19 268-286 2-20 (26)
82 smart00370 LRR Leucine-rich re 88.7 0.31 6.6E-06 27.7 1.6 21 290-311 1-21 (26)
83 smart00369 LRR_TYP Leucine-ric 88.7 0.31 6.6E-06 27.7 1.6 21 290-311 1-21 (26)
84 PRK04841 transcriptional regul 86.7 2.5 5.3E-05 49.0 9.0 125 18-168 206-332 (903)
85 smart00367 LRR_CC Leucine-rich 81.2 0.84 1.8E-05 25.9 1.0 14 538-551 2-15 (26)
86 smart00364 LRR_BAC Leucine-ric 78.0 1.5 3.2E-05 24.9 1.3 17 269-285 3-19 (26)
87 smart00365 LRR_SD22 Leucine-ri 67.8 4.2 9E-05 23.2 1.6 14 268-281 2-15 (26)
88 PF13516 LRR_6: Leucine Rich r 56.1 7.4 0.00016 21.3 1.2 13 290-302 1-13 (24)
89 smart00368 LRR_RI Leucine rich 49.2 12 0.00027 21.5 1.5 12 269-280 3-14 (28)
90 KOG4308 LRR-containing protein 38.0 1.6 3.4E-05 45.8 -6.1 86 241-327 89-184 (478)
91 KOG3763 mRNA export factor TAP 35.8 16 0.00035 38.1 0.9 84 424-512 215-308 (585)
92 KOG3763 mRNA export factor TAP 31.7 31 0.00067 36.2 2.1 37 211-247 216-252 (585)
93 PF14050 Nudc_N: N-terminal co 30.1 97 0.0021 22.1 3.8 32 15-46 2-33 (62)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-58 Score=500.89 Aligned_cols=341 Identities=27% Similarity=0.419 Sum_probs=282.4
Q ss_pred CcccccCCC-cccccchHHHHHHHHhcCCChHHHHHHHHHhhccCCChhHHHHHHhcccccc----cCcCCCCchHHHHh
Q 007330 1 MFNFTSLLD-ESEKRKLLYESSKVQQGGVGIKTILHKFGNLLCLRRARKERGSSILDIEMGK----LNELENDPLAPLLL 75 (607)
Q Consensus 1 ~f~~~~~~~-~~~~~~~~~~~~~i~~~c~GlPLal~~~g~~L~~~~~~~~W~~~~~~~~~~~----l~~~~~~i~~~L~~ 75 (607)
+|...||.. ....+.++++|++||++|+|||||++++|+.|+.|++.++| +++.+...+. .++.++.|+++|++
T Consensus 325 LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW-~~~~~~l~s~~~~~~~~~~~~i~~iLkl 403 (889)
T KOG4658|consen 325 LFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEW-RRALNVLKSSLAADFSGMEESILPILKL 403 (889)
T ss_pred HHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHH-HHHHccccccccCCCCchhhhhHHhhhc
Confidence 466677766 33446699999999999999999999999999999999999 9998876655 22335679999999
Q ss_pred cccCCChhhHHHhhhhcccCCCceeChhHHHHHHHHcCCcccC-CCCcHHHHHHHHHHHHHHcCCCcccccCCCCCeeEE
Q 007330 76 SYNDFPPMIKLCFLYCAVFPKGYNIEKDELIKLWMAQGYIRPI-GNKEMEVIGQEYFDYLATRSFFQKFDKDDEDNVTRC 154 (607)
Q Consensus 76 SYd~L~~~~k~cfL~~s~fp~~~~i~~~~Li~~wi~~g~i~~~-~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~ 154 (607)
|||+||.++|.||||||+|||||.|+++.|+.+|+||||+.+. .++++++.|+.|+.+|+.++|++..... ++..+|
T Consensus 404 Syd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~--~~~~~~ 481 (889)
T KOG4658|consen 404 SYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE--GRKETV 481 (889)
T ss_pred cHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc--cceeEE
Confidence 9999999999999999999999999999999999999999884 4688999999999999999999987654 666889
Q ss_pred EECHHHHHHHHHhhh-----hceEEEecC-CCccccccCccCceeEEEEEeCCCCCccccccCCCCeeEEEeeccchhhh
Q 007330 155 KMSDAVHDFAQFLTK-----HEYFSIEAD-GSEESLTKTSLEKFRHSMLVLGRRASFPVSIFKAKKLRSLLIHSEFEVSF 228 (607)
Q Consensus 155 ~mhdli~~~~~~~~~-----~e~~~~~~~-~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 228 (607)
+|||+||+||.++++ .++.+...+ +....+....+..+|+++++++....++. -..+++|++|.+.++.....
T Consensus 482 kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~-~~~~~~L~tLll~~n~~~l~ 560 (889)
T KOG4658|consen 482 KMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAG-SSENPKLRTLLLQRNSDWLL 560 (889)
T ss_pred EeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccC-CCCCCccceEEEeecchhhh
Confidence 999999999999999 666555443 44445566668899999999999877443 34566899999999854345
Q ss_pred hhhhhhhccCCceeEEEecCcccccccccccccccccCcccccEEecCCCCcccCchhhhcCCcccEeecCCCCCccccc
Q 007330 229 HVLQGLFDYLTCLRALKITGKVSWGQNSIYAIPKEKEKLVHLRYLKLSLLMREELPDIVCELFNLQTLEVEHCPRLKRLP 308 (607)
Q Consensus 229 ~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp 308 (607)
.....+|..++.|+||||++ +..+.++|+.++.|.+||||+++++.+..+|..+++|++|.+||+..+..+..+|
T Consensus 561 ~is~~ff~~m~~LrVLDLs~-----~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~ 635 (889)
T KOG4658|consen 561 EISGEFFRSLPLLRVLDLSG-----NSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIP 635 (889)
T ss_pred hcCHHHHhhCcceEEEECCC-----CCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccccccccccc
Confidence 55677799999999999996 5567889999999999999999999999999999999999999999998777777
Q ss_pred cccccccCcccccccccccccCcCCCCCCCCCCccCcEEecC
Q 007330 309 QGIGKLVNLRHLIYYYSNLDYMPKGFERLTCLRTLTEFVVSG 350 (607)
Q Consensus 309 ~~i~~l~~L~~L~~~~~~l~~lp~~i~~l~~L~~L~~~~~~~ 350 (607)
..+..|++|++|.+.+.....-...++.+.+|++|..+....
T Consensus 636 ~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 636 GILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred chhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence 666779999999976655322222344555666665554533
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.5e-49 Score=454.77 Aligned_cols=509 Identities=20% Similarity=0.211 Sum_probs=351.9
Q ss_pred CcccccCCCcccccchHHHHHHHHhcCCChHHHHHHHHHhhccCCChhHHHHHHhcccccccCcCCCCchHHHHhcccCC
Q 007330 1 MFNFTSLLDESEKRKLLYESSKVQQGGVGIKTILHKFGNLLCLRRARKERGSSILDIEMGKLNELENDPLAPLLLSYNDF 80 (607)
Q Consensus 1 ~f~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~~g~~L~~~~~~~~W~~~~~~~~~~~l~~~~~~i~~~L~~SYd~L 80 (607)
||+.+||++..+++++++++++||++|+|+||||+++|+.|+++ +.++| +.+++.+...+ +.+|+++|++|||+|
T Consensus 359 LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W-~~~l~~L~~~~---~~~I~~~L~~SYd~L 433 (1153)
T PLN03210 359 MFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDW-MDMLPRLRNGL---DGKIEKTLRVSYDGL 433 (1153)
T ss_pred HHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHH-HHHHHHHHhCc---cHHHHHHHHHhhhcc
Confidence 58899999988888999999999999999999999999999998 89999 98888765433 346999999999999
Q ss_pred Ch-hhHHHhhhhcccCCCceeChhHHHHHHHHcCCcccCCCCcHHHHHHHHHHHHHHcCCCcccccCCCCCeeEEEECHH
Q 007330 81 PP-MIKLCFLYCAVFPKGYNIEKDELIKLWMAQGYIRPIGNKEMEVIGQEYFDYLATRSFFQKFDKDDEDNVTRCKMSDA 159 (607)
Q Consensus 81 ~~-~~k~cfL~~s~fp~~~~i~~~~Li~~wi~~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mhdl 159 (607)
++ ..|.||+||||||.++.+ +.+..|.+.+.+. ++..++.|++++|++.... .++|||+
T Consensus 434 ~~~~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~----------~~~~l~~L~~ksLi~~~~~-------~~~MHdL 493 (1153)
T PLN03210 434 NNKKDKAIFRHIACLFNGEKV---NDIKLLLANSDLD----------VNIGLKNLVDKSLIHVRED-------IVEMHSL 493 (1153)
T ss_pred CccchhhhhheehhhcCCCCH---HHHHHHHHhcCCC----------chhChHHHHhcCCEEEcCC-------eEEhhhH
Confidence 87 699999999999988644 4577788876553 2334889999999987532 4899999
Q ss_pred HHHHHHHhhhhce-------EEEecCCCcc-ccccCccCceeEEEEEeCCCCCc---cccccCCCCeeEEEeeccchh--
Q 007330 160 VHDFAQFLTKHEY-------FSIEADGSEE-SLTKTSLEKFRHSMLVLGRRASF---PVSIFKAKKLRSLLIHSEFEV-- 226 (607)
Q Consensus 160 i~~~~~~~~~~e~-------~~~~~~~~~~-~~~~~~~~~~r~l~l~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~-- 226 (607)
+|+||+.+++.+. +......... ........+++.+++......++ ..++.+|++|+.|.+..+...
T Consensus 494 l~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~ 573 (1153)
T PLN03210 494 LQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQK 573 (1153)
T ss_pred HHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEeccccccc
Confidence 9999999988763 1111100000 01112245678887766555432 456788999999988654210
Q ss_pred --hhhhhhhhhccC-CceeEEEecCcccccccccccccccccCcccccEEecCCCCcccCchhhhcCCcccEeecCCCCC
Q 007330 227 --SFHVLQGLFDYL-TCLRALKITGKVSWGQNSIYAIPKEKEKLVHLRYLKLSLLMREELPDIVCELFNLQTLEVEHCPR 303 (607)
Q Consensus 227 --~~~~~~~~~~~l-~~L~~L~L~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~ 303 (607)
....++..+..+ .+||.|++. ++.++.+|..+ .+.+|++|+++++.+..+|..+..+++|++|+|++|..
T Consensus 574 ~~~~~~lp~~~~~lp~~Lr~L~~~------~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~ 646 (1153)
T PLN03210 574 KEVRWHLPEGFDYLPPKLRLLRWD------KYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKN 646 (1153)
T ss_pred ccceeecCcchhhcCcccEEEEec------CCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCC
Confidence 011122324444 458888888 66777777666 46777777777777777777777777777777777766
Q ss_pred ccccccccccccCcccccc-cccccccCcCCCCCCCCCCccCcEEecCCc-cCCCcccccccccccccCceEEEeccCCC
Q 007330 304 LKRLPQGIGKLVNLRHLIY-YYSNLDYMPKGFERLTCLRTLTEFVVSGGK-YSGKACNIEGLRHLNHLGGVFRITGLGNV 381 (607)
Q Consensus 304 l~~lp~~i~~l~~L~~L~~-~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~-~~~~~~~~~~l~~L~~L~~~l~i~~~~~~ 381 (607)
++.+| .++.+++|+.|++ +|..+..+|..++.+++|+.|. ++++. +...+..+ +++.|+ .+.+.+|..+
T Consensus 647 l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~---L~~c~~L~~Lp~~i----~l~sL~-~L~Lsgc~~L 717 (1153)
T PLN03210 647 LKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD---MSRCENLEILPTGI----NLKSLY-RLNLSGCSRL 717 (1153)
T ss_pred cCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEe---CCCCCCcCccCCcC----CCCCCC-EEeCCCCCCc
Confidence 77776 4677777777773 4556677777777777666666 33321 11222211 233333 5555555433
Q ss_pred CCHhHHHHHHhcCCCCCcceEEEecCCCCCchh--------------cHHHHh--------hcCCCCCCcceEEEeecCC
Q 007330 382 TDVDEAENAELEKKRNVVDLGLWFDKDEEGEEA--------------DHEEII--------EALKPHSNLVALDILGFKG 439 (607)
Q Consensus 382 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--------------~~~~~~--------~~l~~~~~L~~L~l~~~~~ 439 (607)
..... ...+|+.|+++.+........ ....+. .....+++|+.|++++|..
T Consensus 718 ~~~p~-------~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~ 790 (1153)
T PLN03210 718 KSFPD-------ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPS 790 (1153)
T ss_pred ccccc-------ccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCC
Confidence 32211 123455555544432110000 000000 0112246788888888877
Q ss_pred CCCCChhhhcCCCccEEEEecCCCCCcCCCCCCCCCCCeeEecCCc-CeeeCccccCCCCCCccCCCccceeeecccccc
Q 007330 440 KITFPKWIMSLNNLKSLHLRSCEKCEILSPLGKLPSLETLYIAGMS-GKRVGDEFFGIGSDCNIAFPKLKFLRVVDMFEW 518 (607)
Q Consensus 440 ~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 518 (607)
...+|.+++.+++|+.|+|++|..++.+|....+++|+.|++++|. +..++. ..++|+.|+++++ .+
T Consensus 791 l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~-----------~~~nL~~L~Ls~n-~i 858 (1153)
T PLN03210 791 LVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPD-----------ISTNISDLNLSRT-GI 858 (1153)
T ss_pred ccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccc-----------cccccCEeECCCC-CC
Confidence 7668888888889999999888877777766678888999998887 544432 3457888888775 55
Q ss_pred ccccccccccCcccccccCCccceeeeecccCccccCCCCCCCCCcCeEEEecCcchhHh
Q 007330 519 EEWGFGITRSNVKEDVMVMPCLNYLDIQFCFKLKALPGYLLEITALEKLEILCCPILEQR 578 (607)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~ 578 (607)
+.++.. +..+++|+.|++++|++++.+|..+..+++|+.+++++|++|...
T Consensus 859 ~~iP~s---------i~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 859 EEVPWW---------IEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred ccChHH---------HhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccc
Confidence 555544 789999999999999999999988889999999999999988753
No 3
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.94 E-value=2.9e-29 Score=247.44 Aligned_cols=341 Identities=20% Similarity=0.224 Sum_probs=268.6
Q ss_pred CceeEEEEEeCCCCCccccccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccc--cccccccCc
Q 007330 190 EKFRHSMLVLGRRASFPVSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIY--AIPKEKEKL 267 (607)
Q Consensus 190 ~~~r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~--~lp~~~~~l 267 (607)
.+++.+.+.......+|..+..+.+|+.|.+.+|. .... -+-++.++.||.+++. +|.++ .+|..+..+
T Consensus 32 t~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~--L~~v-hGELs~Lp~LRsv~~R------~N~LKnsGiP~diF~l 102 (1255)
T KOG0444|consen 32 TQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQ--LISV-HGELSDLPRLRSVIVR------DNNLKNSGIPTDIFRL 102 (1255)
T ss_pred hheeEEEechhhhhhChHHHHHHhhhhhhhhhhhh--hHhh-hhhhccchhhHHHhhh------ccccccCCCCchhccc
Confidence 35778888888888889999999999999998886 3332 3337888999999998 66664 478889999
Q ss_pred ccccEEecCCCCcccCchhhhcCCcccEeecCCCCCcccccccc-ccccCcccccccccccccCcCCCCCCCCCCccCcE
Q 007330 268 VHLRYLKLSLLMREELPDIVCELFNLQTLEVEHCPRLKRLPQGI-GKLVNLRHLIYYYSNLDYMPKGFERLTCLRTLTEF 346 (607)
Q Consensus 268 ~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i-~~l~~L~~L~~~~~~l~~lp~~i~~l~~L~~L~~~ 346 (607)
..|..|||++|++.+.|..+.+-+++.+|+|++|+ |..+|..+ .+|+-|-.||++.|++..+|+.+.++.+||+|.
T Consensus 103 ~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~-- 179 (1255)
T KOG0444|consen 103 KDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLK-- 179 (1255)
T ss_pred ccceeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhh--
Confidence 99999999999999999999999999999999987 99999775 688899999999999999999999999998887
Q ss_pred EecCCccCCCcccccccccccccCceEEEeccCCCCCHhHHHHHHhcCCCCCcceEEEecCCCCCchhcHHHHhhcCCCC
Q 007330 347 VVSGGKYSGKACNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAELEKKRNVVDLGLWFDKDEEGEEADHEEIIEALKPH 426 (607)
Q Consensus 347 ~~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~ 426 (607)
++++.+. .+.+.+++.++.|. ++.+++ ........+..+..+.+|..++++.|.. ..+|+.+-.+
T Consensus 180 -Ls~NPL~--hfQLrQLPsmtsL~-vLhms~---TqRTl~N~Ptsld~l~NL~dvDlS~N~L--------p~vPecly~l 244 (1255)
T KOG0444|consen 180 -LSNNPLN--HFQLRQLPSMTSLS-VLHMSN---TQRTLDNIPTSLDDLHNLRDVDLSENNL--------PIVPECLYKL 244 (1255)
T ss_pred -cCCChhh--HHHHhcCccchhhh-hhhccc---ccchhhcCCCchhhhhhhhhccccccCC--------CcchHHHhhh
Confidence 6666532 23455566666554 444433 2222233345566778888888888764 3567778888
Q ss_pred CCcceEEEeecCCCCCCChhhhcCCCccEEEEecCCCCCcCCCCCCCCCCCeeEecCCc--CeeeCccccCCCCCCccCC
Q 007330 427 SNLVALDILGFKGKITFPKWIMSLNNLKSLHLRSCEKCEILSPLGKLPSLETLYIAGMS--GKRVGDEFFGIGSDCNIAF 504 (607)
Q Consensus 427 ~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~--~~~~~~~~~~~~~~~~~~~ 504 (607)
++|+.|++++|.++. +....+.+.+|++|+++.|+....+..+..++.|+.|++.+|. +..+|..+ +.+
T Consensus 245 ~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGI--------GKL 315 (1255)
T KOG0444|consen 245 RNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGI--------GKL 315 (1255)
T ss_pred hhhheeccCcCceee-eeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccch--------hhh
Confidence 899999999998887 7777778889999999999766666678899999999998887 34444422 356
Q ss_pred CccceeeeccccccccccccccccCcccccccCCccceeeeecccCccccCCCCCCCCCcCeEEEecCcchhH
Q 007330 505 PKLKFLRVVDMFEWEEWGFGITRSNVKEDVMVMPCLNYLDIQFCFKLKALPGYLLEITALEKLEILCCPILEQ 577 (607)
Q Consensus 505 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~ 577 (607)
-+|+.+...++ .++-+|.| ++.|++|+.|.+.. +.+-.+|+.|.-++.|+.|++..+|+|-.
T Consensus 316 ~~Levf~aanN-~LElVPEg---------lcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 316 IQLEVFHAANN-KLELVPEG---------LCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLVM 377 (1255)
T ss_pred hhhHHHHhhcc-ccccCchh---------hhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCccC
Confidence 67777777765 77777777 89999999999985 78999999999999999999999998763
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.93 E-value=4.4e-26 Score=261.95 Aligned_cols=329 Identities=18% Similarity=0.218 Sum_probs=176.1
Q ss_pred CCceeEEEecCcccccccccc-cccccccCcccccEEecCCCCc-ccCchhhhcCCcccEeecCCCCCcccccccccccc
Q 007330 238 LTCLRALKITGKVSWGQNSIY-AIPKEKEKLVHLRYLKLSLLMR-EELPDIVCELFNLQTLEVEHCPRLKRLPQGIGKLV 315 (607)
Q Consensus 238 l~~L~~L~L~~~~~~~~~~l~-~lp~~~~~l~~L~~L~L~~~~i-~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~ 315 (607)
+++|++|+++ ++.+. .+|..++.+++|++|++++|.+ ..+|..++++++|++|++++|.....+|..+++++
T Consensus 139 l~~L~~L~Ls------~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 212 (968)
T PLN00113 139 IPNLETLDLS------NNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMK 212 (968)
T ss_pred cCCCCEEECc------CCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcC
Confidence 4455555555 44443 3456666666666666666663 35566666666666666666664445666666666
Q ss_pred Ccccccccccccc-cCcCCCCCCCCCCccCcEEecCCccCC-CcccccccccccccCceEEEeccCCCCCHhHHHHHHhc
Q 007330 316 NLRHLIYYYSNLD-YMPKGFERLTCLRTLTEFVVSGGKYSG-KACNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAELE 393 (607)
Q Consensus 316 ~L~~L~~~~~~l~-~lp~~i~~l~~L~~L~~~~~~~~~~~~-~~~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~ 393 (607)
+|++|+++.|.+. .+|..++.+++|+.|+ ++++.+.+ .+..+..+++|+ .+.+..... .......+.
T Consensus 213 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~---L~~n~l~~~~p~~l~~l~~L~----~L~L~~n~l----~~~~p~~l~ 281 (968)
T PLN00113 213 SLKWIYLGYNNLSGEIPYEIGGLTSLNHLD---LVYNNLTGPIPSSLGNLKNLQ----YLFLYQNKL----SGPIPPSIF 281 (968)
T ss_pred CccEEECcCCccCCcCChhHhcCCCCCEEE---CcCceeccccChhHhCCCCCC----EEECcCCee----eccCchhHh
Confidence 6666666665554 4555566666665555 44443322 122333333333 443333211 111123344
Q ss_pred CCCCCcceEEEecCCCCCchhcHHHHhhcCCCCCCcceEEEeecCCCCCCChhhhcCCCccEEEEecCCCCCcCC-CCCC
Q 007330 394 KKRNVVDLGLWFDKDEEGEEADHEEIIEALKPHSNLVALDILGFKGKITFPKWIMSLNNLKSLHLRSCEKCEILS-PLGK 472 (607)
Q Consensus 394 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~-~l~~ 472 (607)
.+++|+.|++++|.. .+.++..+..+++|+.|++++|...+.+|.++..+++|+.|++++|.....+| .++.
T Consensus 282 ~l~~L~~L~Ls~n~l-------~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 354 (968)
T PLN00113 282 SLQKLISLDLSDNSL-------SGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK 354 (968)
T ss_pred hccCcCEEECcCCee-------ccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhC
Confidence 556666666666543 22344455566677777777766665566666667777777777665443333 3566
Q ss_pred CCCCCeeEecCCcCe-eeCccccCC----------------CCCCccCCCccceeeeccccccccccccccccCcccccc
Q 007330 473 LPSLETLYIAGMSGK-RVGDEFFGI----------------GSDCNIAFPKLKFLRVVDMFEWEEWGFGITRSNVKEDVM 535 (607)
Q Consensus 473 l~~L~~L~L~~~~~~-~~~~~~~~~----------------~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 535 (607)
+++|+.|++++|.+. .++..+... .+.....+++|+.|++.++.-...++ ..+.
T Consensus 355 ~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p---------~~~~ 425 (968)
T PLN00113 355 HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELP---------SEFT 425 (968)
T ss_pred CCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECC---------hhHh
Confidence 667777777666633 222222100 00001234455555555543222222 2255
Q ss_pred cCCccceeeeecccCccccCCCCCCCCCcCeEEEecCcchhHhhhcCCCCCCCcccccCeeEeCceEeec
Q 007330 536 VMPCLNYLDIQFCFKLKALPGYLLEITALEKLEILCCPILEQRYRKGTGEDWAKVAHVPTITINRQYVQG 605 (607)
Q Consensus 536 ~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~ 605 (607)
.+++|+.|++++|.....+|..+..+++|+.|++++|.-.... +.+....++..+.+.++.+.+
T Consensus 426 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~------p~~~~~~~L~~L~ls~n~l~~ 489 (968)
T PLN00113 426 KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGL------PDSFGSKRLENLDLSRNQFSG 489 (968)
T ss_pred cCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeec------CcccccccceEEECcCCccCC
Confidence 6677777777776544445555566777777777777532211 122233556667777766654
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.93 E-value=7.1e-26 Score=260.25 Aligned_cols=371 Identities=20% Similarity=0.206 Sum_probs=212.7
Q ss_pred cCceeEEEEEeCCCCCccccccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccc-cccccccCc
Q 007330 189 LEKFRHSMLVLGRRASFPVSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIY-AIPKEKEKL 267 (607)
Q Consensus 189 ~~~~r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~-~lp~~~~~l 267 (607)
..++|++.+.++...... ....+++|++|++++|. ....++..+..+++|++|+++ ++.+. .+|..++++
T Consensus 117 l~~L~~L~Ls~n~l~~~~-p~~~l~~L~~L~Ls~n~--~~~~~p~~~~~l~~L~~L~L~------~n~l~~~~p~~~~~l 187 (968)
T PLN00113 117 SSSLRYLNLSNNNFTGSI-PRGSIPNLETLDLSNNM--LSGEIPNDIGSFSSLKVLDLG------GNVLVGKIPNSLTNL 187 (968)
T ss_pred CCCCCEEECcCCcccccc-CccccCCCCEEECcCCc--ccccCChHHhcCCCCCEEECc------cCcccccCChhhhhC
Confidence 345666666655543211 11345666666666664 222344446667777777776 44442 456666667
Q ss_pred ccccEEecCCCCc-ccCchhhhcCCcccEeecCCCCCccccccccccccCcccccccccccc-cCcCCCCCCCCCCccCc
Q 007330 268 VHLRYLKLSLLMR-EELPDIVCELFNLQTLEVEHCPRLKRLPQGIGKLVNLRHLIYYYSNLD-YMPKGFERLTCLRTLTE 345 (607)
Q Consensus 268 ~~L~~L~L~~~~i-~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~l~-~lp~~i~~l~~L~~L~~ 345 (607)
++|++|++++|.+ ..+|..++++++|++|++++|.....+|..++++++|++|+++.|.+. .+|..++++++|+.|.
T Consensus 188 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~- 266 (968)
T PLN00113 188 TSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLF- 266 (968)
T ss_pred cCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEE-
Confidence 7777777776663 345666666777777777766644456666666777777776666554 4555566666555554
Q ss_pred EEecCCccCC-CcccccccccccccCceEEEeccCCCCC--------------------HhHHHHHHhcCCCCCcceEEE
Q 007330 346 FVVSGGKYSG-KACNIEGLRHLNHLGGVFRITGLGNVTD--------------------VDEAENAELEKKRNVVDLGLW 404 (607)
Q Consensus 346 ~~~~~~~~~~-~~~~~~~l~~L~~L~~~l~i~~~~~~~~--------------------~~~~~~~~l~~~~~L~~L~l~ 404 (607)
++.+.+.+ .+..+..+.+|+ .+.+.++..... ........+..+++|+.|+++
T Consensus 267 --L~~n~l~~~~p~~l~~l~~L~----~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~ 340 (968)
T PLN00113 267 --LYQNKLSGPIPPSIFSLQKLI----SLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLW 340 (968)
T ss_pred --CcCCeeeccCchhHhhccCcC----EEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECc
Confidence 34443321 112222233322 333332211000 000111223344445555554
Q ss_pred ecCCCCCchhcHHHHhhcCCCCCCcceEEEeecCCCCCCChhhhcCCCccEEEEecCCCCCcC-CCCCCCCCCCeeEecC
Q 007330 405 FDKDEEGEEADHEEIIEALKPHSNLVALDILGFKGKITFPKWIMSLNNLKSLHLRSCEKCEIL-SPLGKLPSLETLYIAG 483 (607)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~-~~l~~l~~L~~L~L~~ 483 (607)
.|.. .+.++..+..+++|+.|++++|...+.+|.++..+++|+.|++++|.....+ ..++.+++|+.|++++
T Consensus 341 ~n~l-------~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~ 413 (968)
T PLN00113 341 SNKF-------SGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQD 413 (968)
T ss_pred CCCC-------cCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcC
Confidence 4432 1223344445555555666555555445555555556666666655433322 3366778888888888
Q ss_pred CcCee-eCccccCCCCCCccCCCccceeeeccccccccccccccccCcccccccCCccceeeeecccCccccCCCCCCCC
Q 007330 484 MSGKR-VGDEFFGIGSDCNIAFPKLKFLRVVDMFEWEEWGFGITRSNVKEDVMVMPCLNYLDIQFCFKLKALPGYLLEIT 562 (607)
Q Consensus 484 ~~~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~ 562 (607)
|.+.. ++..+ ..+++|+.|+++++.-...++.. ...+++|+.|++++|.....+|..+ ..+
T Consensus 414 n~l~~~~p~~~--------~~l~~L~~L~Ls~N~l~~~~~~~---------~~~l~~L~~L~L~~n~~~~~~p~~~-~~~ 475 (968)
T PLN00113 414 NSFSGELPSEF--------TKLPLVYFLDISNNNLQGRINSR---------KWDMPSLQMLSLARNKFFGGLPDSF-GSK 475 (968)
T ss_pred CEeeeECChhH--------hcCCCCCEEECcCCcccCccChh---------hccCCCCcEEECcCceeeeecCccc-ccc
Confidence 87443 33322 36899999999998544444433 5689999999999998777788655 468
Q ss_pred CcCeEEEecCcchhHhhhcCCCCCCCcccccCeeEeCceEeec
Q 007330 563 ALEKLEILCCPILEQRYRKGTGEDWAKVAHVPTITINRQYVQG 605 (607)
Q Consensus 563 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~ 605 (607)
+|+.|++++|.-.. .....+..+..+..+.+.+|.+.+
T Consensus 476 ~L~~L~ls~n~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~~ 513 (968)
T PLN00113 476 RLENLDLSRNQFSG-----AVPRKLGSLSELMQLKLSENKLSG 513 (968)
T ss_pred cceEEECcCCccCC-----ccChhhhhhhccCEEECcCCccee
Confidence 99999999986422 122234566777788888887765
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=4.9e-26 Score=224.85 Aligned_cols=342 Identities=19% Similarity=0.209 Sum_probs=283.5
Q ss_pred CceeEEEEEeCCCC--CccccccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccccccccccCc
Q 007330 190 EKFRHSMLVLGRRA--SFPVSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIPKEKEKL 267 (607)
Q Consensus 190 ~~~r~l~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp~~~~~l 267 (607)
+=+|.+.+++++.. .+|.....|++++-|.+.... ... +|.-++.+.+|..|.+. +|.+..+-..++.|
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~--L~~-vPeEL~~lqkLEHLs~~------HN~L~~vhGELs~L 77 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTK--LEQ-VPEELSRLQKLEHLSMA------HNQLISVHGELSDL 77 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhh--hhh-ChHHHHHHhhhhhhhhh------hhhhHhhhhhhccc
Confidence 34677788887764 678888999999999998774 333 55558999999999999 99999998899999
Q ss_pred ccccEEecCCCCc--ccCchhhhcCCcccEeecCCCCCccccccccccccCcccccccccccccCcCCCCCCCCCCccCc
Q 007330 268 VHLRYLKLSLLMR--EELPDIVCELFNLQTLEVEHCPRLKRLPQGIGKLVNLRHLIYYYSNLDYMPKGFERLTCLRTLTE 345 (607)
Q Consensus 268 ~~L~~L~L~~~~i--~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~l~~lp~~i~~l~~L~~L~~ 345 (607)
+.||.+.++.|++ ..+|..|-+|..|.+|||++|. ++++|..+..-+++-.|+++.|++..+|..+ +-+|..|-.
T Consensus 78 p~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~IetIPn~l--finLtDLLf 154 (1255)
T KOG0444|consen 78 PRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNNIETIPNSL--FINLTDLLF 154 (1255)
T ss_pred hhhHHHhhhccccccCCCCchhcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccCccccCCchH--HHhhHhHhh
Confidence 9999999999985 5789999999999999999998 9999999999999999999999999999864 334555555
Q ss_pred EEecCCccCCCcccccccccccccCceEEEeccCCCCCHhHHHHHHhcCCCCCcceEEEecCCCCCchhcHHHHhhcCCC
Q 007330 346 FVVSGGKYSGKACNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAELEKKRNVVDLGLWFDKDEEGEEADHEEIIEALKP 425 (607)
Q Consensus 346 ~~~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~ 425 (607)
++++.+.++.+++.+..+..|+.| .+++ +.+.......+..+.+|+.|.++.+.. ....+|.++..
T Consensus 155 LDLS~NrLe~LPPQ~RRL~~LqtL----~Ls~----NPL~hfQLrQLPsmtsL~vLhms~TqR------Tl~N~Ptsld~ 220 (1255)
T KOG0444|consen 155 LDLSNNRLEMLPPQIRRLSMLQTL----KLSN----NPLNHFQLRQLPSMTSLSVLHMSNTQR------TLDNIPTSLDD 220 (1255)
T ss_pred hccccchhhhcCHHHHHHhhhhhh----hcCC----ChhhHHHHhcCccchhhhhhhcccccc------hhhcCCCchhh
Confidence 569999988888888888887744 3333 334455556677778888888876653 24578888889
Q ss_pred CCCcceEEEeecCCCCCCChhhhcCCCccEEEEecCCCCCcCCCCCCCCCCCeeEecCCcCeeeCccccCCCCCCccCCC
Q 007330 426 HSNLVALDILGFKGKITFPKWIMSLNNLKSLHLRSCEKCEILSPLGKLPSLETLYIAGMSGKRVGDEFFGIGSDCNIAFP 505 (607)
Q Consensus 426 ~~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~ 505 (607)
+.+|..++++.|.+.. +|+++..+++|+.|+|++|...+.--..+...+|++|+++.|.++.+|+.+. .++
T Consensus 221 l~NL~dvDlS~N~Lp~-vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avc--------KL~ 291 (1255)
T KOG0444|consen 221 LHNLRDVDLSENNLPI-VPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVC--------KLT 291 (1255)
T ss_pred hhhhhhccccccCCCc-chHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHh--------hhH
Confidence 9999999999999988 9999999999999999999776655567788899999999999998988664 688
Q ss_pred ccceeeecccc-ccccccccccccCcccccccCCccceeeeecccCccccCCCCCCCCCcCeEEEecCcchh
Q 007330 506 KLKFLRVVDMF-EWEEWGFGITRSNVKEDVMVMPCLNYLDIQFCFKLKALPGYLLEITALEKLEILCCPILE 576 (607)
Q Consensus 506 ~L~~L~l~~~~-~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~ 576 (607)
+|+.|.+.++. ..+-+|.| ++.+.+|+++...+ +++.-+|+++..+..|++|.+..+.-++
T Consensus 292 kL~kLy~n~NkL~FeGiPSG---------IGKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~NrLiT 353 (1255)
T KOG0444|consen 292 KLTKLYANNNKLTFEGIPSG---------IGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDHNRLIT 353 (1255)
T ss_pred HHHHHHhccCcccccCCccc---------hhhhhhhHHHHhhc-cccccCchhhhhhHHHHHhcccccceee
Confidence 99999887753 23444555 99999999999998 6899999999999999999998876544
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=2.1e-22 Score=231.71 Aligned_cols=156 Identities=17% Similarity=0.188 Sum_probs=122.5
Q ss_pred CCCCCcceEEEecCCCCCchhcHHHHhhcCCCCCCcceEEEeecCCCCCCChhhhcCCCccEEEEecCCCCCcCCCCCCC
Q 007330 394 KKRNVVDLGLWFDKDEEGEEADHEEIIEALKPHSNLVALDILGFKGKITFPKWIMSLNNLKSLHLRSCEKCEILSPLGKL 473 (607)
Q Consensus 394 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~l 473 (607)
..++|+.|+++.|.. ...+|..++.+++|+.|++++|...+.+|..+ .+++|+.|++++|..+..++.+ .
T Consensus 776 ~~~sL~~L~Ls~n~~-------l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~--~ 845 (1153)
T PLN03210 776 LSPSLTRLFLSDIPS-------LVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI--S 845 (1153)
T ss_pred ccccchheeCCCCCC-------ccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc--c
Confidence 346899999987754 33567788899999999999998777688766 7899999999999877766543 4
Q ss_pred CCCCeeEecCCcCeeeCccccCCCCCCccCCCccceeeeccccccccccccccccCcccccccCCccceeeeecccCccc
Q 007330 474 PSLETLYIAGMSGKRVGDEFFGIGSDCNIAFPKLKFLRVVDMFEWEEWGFGITRSNVKEDVMVMPCLNYLDIQFCFKLKA 553 (607)
Q Consensus 474 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 553 (607)
++|+.|+|++|.++.+|..+ ..+++|+.|++.+|+++..++.. ...+++|+.|++++|.++..
T Consensus 846 ~nL~~L~Ls~n~i~~iP~si--------~~l~~L~~L~L~~C~~L~~l~~~---------~~~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 846 TNISDLNLSRTGIEEVPWWI--------EKFSNLSFLDMNGCNNLQRVSLN---------ISKLKHLETVDFSDCGALTE 908 (1153)
T ss_pred cccCEeECCCCCCccChHHH--------hcCCCCCEEECCCCCCcCccCcc---------cccccCCCeeecCCCccccc
Confidence 78999999999888777654 37999999999999999988765 67899999999999999986
Q ss_pred cCCC-------------CCCCCCcCeEEEecCcchh
Q 007330 554 LPGY-------------LLEITALEKLEILCCPILE 576 (607)
Q Consensus 554 lp~~-------------~~~l~~L~~L~l~~c~~l~ 576 (607)
++-. ...+++...+.+.+|.++.
T Consensus 909 ~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~ 944 (1153)
T PLN03210 909 ASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLD 944 (1153)
T ss_pred ccCCCCchhhhhhcccccccCCchhccccccccCCC
Confidence 5421 0122333455667777665
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.87 E-value=1.3e-23 Score=206.51 Aligned_cols=132 Identities=16% Similarity=0.142 Sum_probs=58.2
Q ss_pred cCCCCCCcceEEEeecCCCCCCC-hhhhcCCCccEEEEecCCCCCcC-CCCCCCCCCCeeEecCCcCeeeCccccCCCCC
Q 007330 422 ALKPHSNLVALDILGFKGKITFP-KWIMSLNNLKSLHLRSCEKCEIL-SPLGKLPSLETLYIAGMSGKRVGDEFFGIGSD 499 (607)
Q Consensus 422 ~l~~~~~L~~L~l~~~~~~~~lp-~~l~~l~~L~~L~L~~~~~~~~~-~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~ 499 (607)
.+...++|+.|+++.|.+.. ++ ..+..+..|++|.|+.|.....- ..+.++.+|+.|+|++|.+...-++ +..
T Consensus 312 ~WsftqkL~~LdLs~N~i~~-l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED----aa~ 386 (873)
T KOG4194|consen 312 SWSFTQKLKELDLSSNRITR-LDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED----AAV 386 (873)
T ss_pred hhhhcccceeEecccccccc-CChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec----chh
Confidence 34444455555555555544 32 23334455555555555322111 1134455555555555553221111 111
Q ss_pred CccCCCccceeeeccccccccccccccccCcccccccCCccceeeeecccCcccc-CCCCCCCCCcCeEEE
Q 007330 500 CNIAFPKLKFLRVVDMFEWEEWGFGITRSNVKEDVMVMPCLNYLDIQFCFKLKAL-PGYLLEITALEKLEI 569 (607)
Q Consensus 500 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l 569 (607)
...++++|+.|.+.++ +++.++.. ++..+++|++|++.+++ +.++ |..+.++ .|++|.+
T Consensus 387 ~f~gl~~LrkL~l~gN-qlk~I~kr--------Afsgl~~LE~LdL~~Na-iaSIq~nAFe~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 387 AFNGLPSLRKLRLTGN-QLKSIPKR--------AFSGLEALEHLDLGDNA-IASIQPNAFEPM-ELKELVM 446 (873)
T ss_pred hhccchhhhheeecCc-eeeecchh--------hhccCcccceecCCCCc-ceeecccccccc-hhhhhhh
Confidence 1124555666665554 45555422 23455566666665543 3332 3334433 5555543
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.87 E-value=2.3e-24 Score=202.75 Aligned_cols=343 Identities=22% Similarity=0.233 Sum_probs=236.2
Q ss_pred cCceeEEEEEeCCCCCccccccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccccccccccCcc
Q 007330 189 LEKFRHSMLVLGRRASFPVSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIPKEKEKLV 268 (607)
Q Consensus 189 ~~~~r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp~~~~~l~ 268 (607)
...+..+.++++...+.|+++.+...+++|++++|. ..+ ++..+.+...|+.|+.+ ++.+.++|++++.+.
T Consensus 67 L~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~--ls~-lp~~i~s~~~l~~l~~s------~n~~~el~~~i~~~~ 137 (565)
T KOG0472|consen 67 LACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNK--LSE-LPEQIGSLISLVKLDCS------SNELKELPDSIGRLL 137 (565)
T ss_pred ccceeEEEeccchhhhCCHHHHHHHHHHHhhcccch--Hhh-ccHHHhhhhhhhhhhcc------ccceeecCchHHHHh
Confidence 344667788888888888888889999999998885 333 45557888889999988 888888888888888
Q ss_pred cccEEecCCCCcccCchhhhcCCcccEeecCCCCCccccccccccccCcccccccccccccCcCCCCCCCCCCccCcEEe
Q 007330 269 HLRYLKLSLLMREELPDIVCELFNLQTLEVEHCPRLKRLPQGIGKLVNLRHLIYYYSNLDYMPKGFERLTCLRTLTEFVV 348 (607)
Q Consensus 269 ~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~l~~lp~~i~~l~~L~~L~~~~~ 348 (607)
.|..|+..+|++.++|+.++++.+|..|++.+|. ++.+|+..-.|+.|++||...|-++.+|+.++.+.+|..|. +
T Consensus 138 ~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~Ly---L 213 (565)
T KOG0472|consen 138 DLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLY---L 213 (565)
T ss_pred hhhhhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHH---h
Confidence 8888888888888888888888888888888877 77787777668888888887888888888888877777665 5
Q ss_pred cCCccCCCcccccccccccccCceEEEeccCCCCCHhHHHHHHhcCCCCCcceEEEecCCCCCchhcHHHHhhcCCCCCC
Q 007330 349 SGGKYSGKACNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAELEKKRNVVDLGLWFDKDEEGEEADHEEIIEALKPHSN 428 (607)
Q Consensus 349 ~~~~~~~~~~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~ 428 (607)
..+++...+ .+..+..|.++. +. ...+.-...+....++++..|++..|.. .+.|..+..+.+
T Consensus 214 ~~Nki~~lP-ef~gcs~L~Elh----~g----~N~i~~lpae~~~~L~~l~vLDLRdNkl--------ke~Pde~clLrs 276 (565)
T KOG0472|consen 214 RRNKIRFLP-EFPGCSLLKELH----VG----ENQIEMLPAEHLKHLNSLLVLDLRDNKL--------KEVPDEICLLRS 276 (565)
T ss_pred hhcccccCC-CCCccHHHHHHH----hc----ccHHHhhHHHHhcccccceeeecccccc--------ccCchHHHHhhh
Confidence 666544333 444444444332 10 0112222223333555555555555542 234444444445
Q ss_pred cceEEEeecCCCCCCChhhhcCCCccEEEEec------------------------------------------------
Q 007330 429 LVALDILGFKGKITFPKWIMSLNNLKSLHLRS------------------------------------------------ 460 (607)
Q Consensus 429 L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~------------------------------------------------ 460 (607)
|++|++++|.+.. +|..++++ .|+.|.+.|
T Consensus 277 L~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~ 354 (565)
T KOG0472|consen 277 LERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSES 354 (565)
T ss_pred hhhhcccCCcccc-CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCc
Confidence 5555555554444 44444444 444444433
Q ss_pred -------------------------------------------CCCCCcCC------------------------CCCCC
Q 007330 461 -------------------------------------------CEKCEILS------------------------PLGKL 473 (607)
Q Consensus 461 -------------------------------------------~~~~~~~~------------------------~l~~l 473 (607)
|+.++.+. .+..+
T Consensus 355 ~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l 434 (565)
T KOG0472|consen 355 FPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQL 434 (565)
T ss_pred ccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhh
Confidence 22111110 13458
Q ss_pred CCCCeeEecCCcCeeeCccccCCCCCCccCCCccceeeeccccccccccccc--------------cccCccc-ccccCC
Q 007330 474 PSLETLYIAGMSGKRVGDEFFGIGSDCNIAFPKLKFLRVVDMFEWEEWGFGI--------------TRSNVKE-DVMVMP 538 (607)
Q Consensus 474 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~--------------~~~~~~~-~~~~~~ 538 (607)
++|..|++++|.+.++|.+++ ..-.|+.|+++.+ .+...|..+ .+..++. -+..|.
T Consensus 435 ~kLt~L~L~NN~Ln~LP~e~~--------~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~ 505 (565)
T KOG0472|consen 435 QKLTFLDLSNNLLNDLPEEMG--------SLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMR 505 (565)
T ss_pred hcceeeecccchhhhcchhhh--------hhhhhheeccccc-ccccchHHHhhHHHHHHHHhccccccccChHHhhhhh
Confidence 999999999999999998875 5556999999886 555555221 1233333 388999
Q ss_pred ccceeeeecccCccccCCCCCCCCCcCeEEEecCc
Q 007330 539 CLNYLDIQFCFKLKALPGYLLEITALEKLEILCCP 573 (607)
Q Consensus 539 ~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 573 (607)
+|..|++.+ +.+..+|..++++++|++|+++|+|
T Consensus 506 nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 506 NLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred hcceeccCC-CchhhCChhhccccceeEEEecCCc
Confidence 999999998 5799999999999999999999987
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.87 E-value=5.8e-23 Score=201.94 Aligned_cols=344 Identities=18% Similarity=0.175 Sum_probs=226.4
Q ss_pred cCceeEEEEEeCCCCCc-cccccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccccc-cccccC
Q 007330 189 LEKFRHSMLVLGRRASF-PVSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAI-PKEKEK 266 (607)
Q Consensus 189 ~~~~r~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~l-p~~~~~ 266 (607)
+...+.|.++++.+..+ +..+.++++|+.+.+..|. ...+|.+.....+|+.|+|. +|.|..+ .+.++.
T Consensus 77 p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~---Lt~IP~f~~~sghl~~L~L~------~N~I~sv~se~L~~ 147 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNE---LTRIPRFGHESGHLEKLDLR------HNLISSVTSEELSA 147 (873)
T ss_pred ccceeeeeccccccccCcHHHHhcCCcceeeeeccch---hhhcccccccccceeEEeee------ccccccccHHHHHh
Confidence 55667777777766554 3456677777777777774 22345544555567777777 6666666 345666
Q ss_pred cccccEEecCCCCcccCchh-hhcCCcccEeecCCCCCccccc-cccccccCcccccccccccccCcCC-CCCCCCCCcc
Q 007330 267 LVHLRYLKLSLLMREELPDI-VCELFNLQTLEVEHCPRLKRLP-QGIGKLVNLRHLIYYYSNLDYMPKG-FERLTCLRTL 343 (607)
Q Consensus 267 l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~~~~~~l~~lp~~-i~~l~~L~~L 343 (607)
++.||.|||+.|.|.++|.. +..=.++++|+|++|. |+.+- ..+..+.+|..|.++.|+++.+|.. +.+|..|+.|
T Consensus 148 l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~L 226 (873)
T KOG4194|consen 148 LPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESL 226 (873)
T ss_pred HhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeecccCcccccCHHHhhhcchhhhh
Confidence 77777777777777777643 4455677777777776 66553 2356666777777777777777754 3335555555
Q ss_pred CcEEecCCccCCC-cccccccccccccCceEEEeccCCCCCHhHHHHHHhcCCCCCcceEEEecCCCCCchhcHHHHhhc
Q 007330 344 TEFVVSGGKYSGK-ACNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAELEKKRNVVDLGLWFDKDEEGEEADHEEIIEA 422 (607)
Q Consensus 344 ~~~~~~~~~~~~~-~~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 422 (607)
+ +..|.+.-. ...+..|++|+.++ +.-.+...+. -..+..+.+++.|++..|... ..--.+
T Consensus 227 d---LnrN~irive~ltFqgL~Sl~nlk--lqrN~I~kL~------DG~Fy~l~kme~l~L~~N~l~-------~vn~g~ 288 (873)
T KOG4194|consen 227 D---LNRNRIRIVEGLTFQGLPSLQNLK--LQRNDISKLD------DGAFYGLEKMEHLNLETNRLQ-------AVNEGW 288 (873)
T ss_pred h---ccccceeeehhhhhcCchhhhhhh--hhhcCccccc------Ccceeeecccceeecccchhh-------hhhccc
Confidence 5 444443221 12233444444331 1111222222 234667888899999888752 222346
Q ss_pred CCCCCCcceEEEeecCCCCCCChhhhcCCCccEEEEecCCCCCcC-CCCCCCCCCCeeEecCCcCeeeCccccCCCCCCc
Q 007330 423 LKPHSNLVALDILGFKGKITFPKWIMSLNNLKSLHLRSCEKCEIL-SPLGKLPSLETLYIAGMSGKRVGDEFFGIGSDCN 501 (607)
Q Consensus 423 l~~~~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~-~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~ 501 (607)
+-.++.|+.|+++.|.+...-++....+++|++|+|+.|...... ..+..|..|+.|.|+.|.+..+.+..|.
T Consensus 289 lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~------ 362 (873)
T KOG4194|consen 289 LFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFV------ 362 (873)
T ss_pred ccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHH------
Confidence 778899999999999888755666678899999999999655433 3477888999999999988888776653
Q ss_pred cCCCccceeeeccccccccccccccccCcccccccCCccceeeeecccCccccC-CCCCCCCCcCeEEEecCcc
Q 007330 502 IAFPKLKFLRVVDMFEWEEWGFGITRSNVKEDVMVMPCLNYLDIQFCFKLKALP-GYLLEITALEKLEILCCPI 574 (607)
Q Consensus 502 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~c~~ 574 (607)
++.+|+.|+++++. +. |. ++.-...+..+++|++|.+.+ ++++.+| ..+..+++|++|++.+++-
T Consensus 363 -~lssL~~LdLr~N~-ls-~~----IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 363 -GLSSLHKLDLRSNE-LS-WC----IEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred -HhhhhhhhcCcCCe-EE-EE----EecchhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCCcc
Confidence 78889999988752 22 11 011122355799999999998 5799998 4466789999999988864
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.85 E-value=1.3e-24 Score=204.42 Aligned_cols=349 Identities=21% Similarity=0.230 Sum_probs=275.0
Q ss_pred cCceeEEEEEeCCCCCccccccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccccccccccCcc
Q 007330 189 LEKFRHSMLVLGRRASFPVSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIPKEKEKLV 268 (607)
Q Consensus 189 ~~~~r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp~~~~~l~ 268 (607)
......+.+.++....+.+....+..+.+|.+++|. ..+ ++..+..+..++.|+.+ ++.+..+|..++.+.
T Consensus 44 qv~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~--l~~-lp~aig~l~~l~~l~vs------~n~ls~lp~~i~s~~ 114 (565)
T KOG0472|consen 44 QVDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNK--LSQ-LPAAIGELEALKSLNVS------HNKLSELPEQIGSLI 114 (565)
T ss_pred hcchhhhhhccCchhhccHhhhcccceeEEEeccch--hhh-CCHHHHHHHHHHHhhcc------cchHhhccHHHhhhh
Confidence 345667777888887777888899999999999986 444 45558889999999999 999999999999999
Q ss_pred cccEEecCCCCcccCchhhhcCCcccEeecCCCCCccccccccccccCcccccccccccccCcCCCCCCCCCCccCcEEe
Q 007330 269 HLRYLKLSLLMREELPDIVCELFNLQTLEVEHCPRLKRLPQGIGKLVNLRHLIYYYSNLDYMPKGFERLTCLRTLTEFVV 348 (607)
Q Consensus 269 ~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~l~~lp~~i~~l~~L~~L~~~~~ 348 (607)
.|+.|+.+++.+.++|++++.+..|+.|+..+|. +..+|.+++.+.+|..|++.+|.++.+|+..-+++.|++|+ +
T Consensus 115 ~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld---~ 190 (565)
T KOG0472|consen 115 SLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLD---C 190 (565)
T ss_pred hhhhhhccccceeecCchHHHHhhhhhhhccccc-cccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcc---c
Confidence 9999999999999999999999999999999987 99999999999999999999999999998877788888887 8
Q ss_pred cCCccCCCcccccccccccccCceEEEeccCCCCCHhHHHHHHhcCCCCCcceEEEecCCCCCchhcHHHHhhcCC-CCC
Q 007330 349 SGGKYSGKACNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAELEKKRNVVDLGLWFDKDEEGEEADHEEIIEALK-PHS 427 (607)
Q Consensus 349 ~~~~~~~~~~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~-~~~ 427 (607)
..+.+...+..++.+.+|..|. +.-.. ......+.++..|++|.+..|. ++.++.... .++
T Consensus 191 ~~N~L~tlP~~lg~l~~L~~Ly--L~~Nk--------i~~lPef~gcs~L~Elh~g~N~--------i~~lpae~~~~L~ 252 (565)
T KOG0472|consen 191 NSNLLETLPPELGGLESLELLY--LRRNK--------IRFLPEFPGCSLLKELHVGENQ--------IEMLPAEHLKHLN 252 (565)
T ss_pred chhhhhcCChhhcchhhhHHHH--hhhcc--------cccCCCCCccHHHHHHHhcccH--------HHhhHHHHhcccc
Confidence 8888888888888888876542 11111 1112256778888888887765 455665554 789
Q ss_pred CcceEEEeecCCCCCCChhhhcCCCccEEEEecCCCCCcCCCCCCCCCCCeeEecCCcCeeeCccccCCC----------
Q 007330 428 NLVALDILGFKGKITFPKWIMSLNNLKSLHLRSCEKCEILSPLGKLPSLETLYIAGMSGKRVGDEFFGIG---------- 497 (607)
Q Consensus 428 ~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~---------- 497 (607)
++..|++..|.... +|..+..+.+|.+|++++|.....++.+|.+ .|+.|-+.+|++..+..+++..+
T Consensus 253 ~l~vLDLRdNklke-~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs 330 (565)
T KOG0472|consen 253 SLLVLDLRDNKLKE-VPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRS 330 (565)
T ss_pred cceeeecccccccc-CchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHH
Confidence 99999999999988 9999999999999999999888888889999 99999999998654432221100
Q ss_pred -------------CC-----CccCC------Cccceeeecccccccccccc--------------c--------------
Q 007330 498 -------------SD-----CNIAF------PKLKFLRVVDMFEWEEWGFG--------------I-------------- 525 (607)
Q Consensus 498 -------------~~-----~~~~~------~~L~~L~l~~~~~l~~~~~~--------------~-------------- 525 (607)
.. ....| -+.+.|++++- +++.+|.. +
T Consensus 331 ~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~-qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~ 409 (565)
T KOG0472|consen 331 KIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDK-QLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVE 409 (565)
T ss_pred hhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccc-ccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHH
Confidence 00 01123 24566666653 44444411 0
Q ss_pred -------------cccCcccccccCCccceeeeecccCccccCCCCCCCCCcCeEEEecC
Q 007330 526 -------------TRSNVKEDVMVMPCLNYLDIQFCFKLKALPGYLLEITALEKLEILCC 572 (607)
Q Consensus 526 -------------~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c 572 (607)
.++.+|..+..+++|..|++++ +-+..+|..+..+.+|+.++++.+
T Consensus 410 lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~N-N~Ln~LP~e~~~lv~Lq~LnlS~N 468 (565)
T KOG0472|consen 410 LKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSN-NLLNDLPEEMGSLVRLQTLNLSFN 468 (565)
T ss_pred HHHHHHHHHhhcCccccchHHHHhhhcceeeeccc-chhhhcchhhhhhhhhheeccccc
Confidence 1234566688999999999998 469999988888999999999865
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.77 E-value=8.7e-21 Score=196.52 Aligned_cols=86 Identities=30% Similarity=0.442 Sum_probs=45.0
Q ss_pred ceeEEEecCcccccccccccccccccCcccccEEecCCCCcccCchhhhcCCcccEeecCCCCCccccccccccccCccc
Q 007330 240 CLRALKITGKVSWGQNSIYAIPKEKEKLVHLRYLKLSLLMREELPDIVCELFNLQTLEVEHCPRLKRLPQGIGKLVNLRH 319 (607)
Q Consensus 240 ~L~~L~L~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~ 319 (607)
+|+.||++ ++.+..+|..+..+.+|+.|+++.|.|.++|.+++++.+|++|+|.+|. +..+|.++..+++|++
T Consensus 46 ~L~~l~ls------nn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~-l~~lP~~~~~lknl~~ 118 (1081)
T KOG0618|consen 46 KLKSLDLS------NNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNR-LQSLPASISELKNLQY 118 (1081)
T ss_pred eeEEeecc------ccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccch-hhcCchhHHhhhcccc
Confidence 35555555 4555555555555555555555555555555555555555555555544 5555555555555555
Q ss_pred ccccccccccCcC
Q 007330 320 LIYYYSNLDYMPK 332 (607)
Q Consensus 320 L~~~~~~l~~lp~ 332 (607)
|+++.|.+..+|.
T Consensus 119 LdlS~N~f~~~Pl 131 (1081)
T KOG0618|consen 119 LDLSFNHFGPIPL 131 (1081)
T ss_pred cccchhccCCCch
Confidence 5555555444443
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.71 E-value=4.5e-19 Score=183.96 Aligned_cols=349 Identities=18% Similarity=0.197 Sum_probs=215.0
Q ss_pred eeEEEEEeCCCCCccccccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccccccccccCccccc
Q 007330 192 FRHSMLVLGRRASFPVSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIPKEKEKLVHLR 271 (607)
Q Consensus 192 ~r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp~~~~~l~~L~ 271 (607)
+.++.++++.+..+|..+..+++|+.|.++.|. +.. .+....++++|++|.|. ++.+..+|.++..+++|+
T Consensus 47 L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~--i~~-vp~s~~~~~~l~~lnL~------~n~l~~lP~~~~~lknl~ 117 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQITLLSHLRQLNLSRNY--IRS-VPSSCSNMRNLQYLNLK------NNRLQSLPASISELKNLQ 117 (1081)
T ss_pred eEEeeccccccccCCchhhhHHHHhhcccchhh--Hhh-Cchhhhhhhcchhheec------cchhhcCchhHHhhhccc
Confidence 788889999998889889999999999999985 333 34557899999999999 899999999999999999
Q ss_pred EEecCCCCcccCchhhhcCCcccEeecCCCCCcccccc-------------------ccccccCcccccccccccccCcC
Q 007330 272 YLKLSLLMREELPDIVCELFNLQTLEVEHCPRLKRLPQ-------------------GIGKLVNLRHLIYYYSNLDYMPK 332 (607)
Q Consensus 272 ~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~-------------------~i~~l~~L~~L~~~~~~l~~lp~ 332 (607)
+|++++|.+..+|.-+..+..++.++.++|..+..++. ++..++. .|+++.|.+.
T Consensus 118 ~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~---- 191 (1081)
T KOG0618|consen 118 YLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME---- 191 (1081)
T ss_pred ccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhh----
Confidence 99999999999998888888888888887743333332 2222222 2444444433
Q ss_pred CCCCCCCCCccCcEEecCCccCCCccccccccccc----------------ccCceEEEeccCCCCCHhHHHHHHhcCCC
Q 007330 333 GFERLTCLRTLTEFVVSGGKYSGKACNIEGLRHLN----------------HLGGVFRITGLGNVTDVDEAENAELEKKR 396 (607)
Q Consensus 333 ~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~----------------~L~~~l~i~~~~~~~~~~~~~~~~l~~~~ 396 (607)
+..++++..|..+.+..+.+......-..+..|. .+. .+.++. ... ...+..+..+.
T Consensus 192 -~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~-~~dis~----n~l-~~lp~wi~~~~ 264 (1081)
T KOG0618|consen 192 -VLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQ-YLDISH----NNL-SNLPEWIGACA 264 (1081)
T ss_pred -hhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccce-eeecch----hhh-hcchHHHHhcc
Confidence 1122233333333333333211111111111110 000 111111 001 11124455566
Q ss_pred CCcceEEEecCCCC---------------CchhcHHHHhhcCCCCCCcceEEEeecCCCCCCChhhh-------------
Q 007330 397 NVVDLGLWFDKDEE---------------GEEADHEEIIEALKPHSNLVALDILGFKGKITFPKWIM------------- 448 (607)
Q Consensus 397 ~L~~L~l~~~~~~~---------------~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~l~------------- 448 (607)
+|+.+....|.... ......+.+++...+.++|++|++..|.+.. +|+.+-
T Consensus 265 nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~-lp~~~l~v~~~~l~~ln~s 343 (1081)
T KOG0618|consen 265 NLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPS-LPDNFLAVLNASLNTLNVS 343 (1081)
T ss_pred cceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccc-cchHHHhhhhHHHHHHhhh
Confidence 66666666665421 1111234566667778888888888887766 554221
Q ss_pred -------------cCCCccEEEEecCCCCC-cCCCCCCCCCCCeeEecCCcCeeeCccccCCCCCCccCCCccceeeecc
Q 007330 449 -------------SLNNLKSLHLRSCEKCE-ILSPLGKLPSLETLYIAGMSGKRVGDEFFGIGSDCNIAFPKLKFLRVVD 514 (607)
Q Consensus 449 -------------~l~~L~~L~L~~~~~~~-~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 514 (607)
.++.|+.|++.+|...+ ..|.+.++++|+.|+|++|.+..+|...+. .++.|+.|.+++
T Consensus 344 ~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~-------kle~LeeL~LSG 416 (1081)
T KOG0618|consen 344 SNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLR-------KLEELEELNLSG 416 (1081)
T ss_pred hccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHh-------chHHhHHHhccc
Confidence 23346666777776433 567788889999999999988888876653 688888899988
Q ss_pred cccccccccccc--------------ccCcccccccCCccceeeeecccCccc--cCCCCCCCCCcCeEEEecCcc
Q 007330 515 MFEWEEWGFGIT--------------RSNVKEDVMVMPCLNYLDIQFCFKLKA--LPGYLLEITALEKLEILCCPI 574 (607)
Q Consensus 515 ~~~l~~~~~~~~--------------~~~~~~~~~~~~~L~~L~l~~c~~l~~--lp~~~~~l~~L~~L~l~~c~~ 574 (607)
+ .++.++..++ +...| .+..++.|+.+|++. ++|+. +|..... ++|+.|+++|++.
T Consensus 417 N-kL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~-N~L~~~~l~~~~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 417 N-KLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSC-NNLSEVTLPEALPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred c-hhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEeccc-chhhhhhhhhhCCC-cccceeeccCCcc
Confidence 6 6666663310 01223 455677777777773 55654 3332221 6777777777764
No 14
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.68 E-value=1.8e-18 Score=170.41 Aligned_cols=113 Identities=26% Similarity=0.474 Sum_probs=90.1
Q ss_pred ccCCCc-ccccchHHHHHHHHhcCCChHHHHHHHHHhhccCCChhHHHHHHhcccccccCc---CCCCchHHHHhcccCC
Q 007330 5 TSLLDE-SEKRKLLYESSKVQQGGVGIKTILHKFGNLLCLRRARKERGSSILDIEMGKLNE---LENDPLAPLLLSYNDF 80 (607)
Q Consensus 5 ~~~~~~-~~~~~~~~~~~~i~~~c~GlPLal~~~g~~L~~~~~~~~W~~~~~~~~~~~l~~---~~~~i~~~L~~SYd~L 80 (607)
.++... ..++.+.+++++|+++|+|+||||+++|++|+.+.+..+| +++++.......+ ....++.++.+||+.|
T Consensus 169 ~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w-~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L 247 (287)
T PF00931_consen 169 RAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEW-EEALEELENSLRESRDYDRSVFSALELSYDSL 247 (287)
T ss_dssp HHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSH-HHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSS
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccceechhcC
Confidence 344433 3456778999999999999999999999999776678999 8887665544432 2356999999999999
Q ss_pred ChhhHHHhhhhcccCCCceeChhHHHHHHHHcCCcccC
Q 007330 81 PPMIKLCFLYCAVFPKGYNIEKDELIKLWMAQGYIRPI 118 (607)
Q Consensus 81 ~~~~k~cfL~~s~fp~~~~i~~~~Li~~wi~~g~i~~~ 118 (607)
|+++|.||+|||+||+++.|+++.|+++|+++||+...
T Consensus 248 ~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 248 PDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred CccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 99999999999999999999999999999999999764
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.65 E-value=8.9e-16 Score=164.55 Aligned_cols=77 Identities=26% Similarity=0.297 Sum_probs=43.6
Q ss_pred ceeEEEecCcccccccccccccccccCcccccEEecCCCCcccCchhhhcCCcccEeecCCCCCccccccccccccCccc
Q 007330 240 CLRALKITGKVSWGQNSIYAIPKEKEKLVHLRYLKLSLLMREELPDIVCELFNLQTLEVEHCPRLKRLPQGIGKLVNLRH 319 (607)
Q Consensus 240 ~L~~L~L~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~ 319 (607)
+|+.|++. +|.++.+|.. +++|++|++++|.++.+|.. .++|+.|++++|. +..+|.. ..+|+.
T Consensus 223 ~L~~L~L~------~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~-L~~Lp~l---p~~L~~ 286 (788)
T PRK15387 223 HITTLVIP------DNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP-LTHLPAL---PSGLCK 286 (788)
T ss_pred CCCEEEcc------CCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCCc-hhhhhhc---hhhcCE
Confidence 56666666 5566666532 35666666666666666542 3456666666655 5555532 234555
Q ss_pred ccccccccccCcC
Q 007330 320 LIYYYSNLDYMPK 332 (607)
Q Consensus 320 L~~~~~~l~~lp~ 332 (607)
|+++.|++..+|.
T Consensus 287 L~Ls~N~Lt~LP~ 299 (788)
T PRK15387 287 LWIFGNQLTSLPV 299 (788)
T ss_pred EECcCCccccccc
Confidence 6666666665554
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.59 E-value=1.4e-15 Score=164.08 Aligned_cols=82 Identities=16% Similarity=0.205 Sum_probs=48.6
Q ss_pred ceeEEEecCcccccccccccccccccCcccccEEecCCCCcccCchhhhcCCcccEeecCCCCCccccccccccccCccc
Q 007330 240 CLRALKITGKVSWGQNSIYAIPKEKEKLVHLRYLKLSLLMREELPDIVCELFNLQTLEVEHCPRLKRLPQGIGKLVNLRH 319 (607)
Q Consensus 240 ~L~~L~L~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~ 319 (607)
+..+|+++ +..++.+|..+. .+|+.|++++|.++.+|..+. .+|++|++++|. ++.+|..+. .+|+.
T Consensus 179 ~~~~L~L~------~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L~~ 245 (754)
T PRK15370 179 NKTELRLK------ILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTIQE 245 (754)
T ss_pred CceEEEeC------CCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc-cccCChhhh--ccccE
Confidence 45566666 555666665443 456666666666666665543 466666666665 566665443 35666
Q ss_pred ccccccccccCcCCC
Q 007330 320 LIYYYSNLDYMPKGF 334 (607)
Q Consensus 320 L~~~~~~l~~lp~~i 334 (607)
|+++.|.+..+|..+
T Consensus 246 L~Ls~N~L~~LP~~l 260 (754)
T PRK15370 246 MELSINRITELPERL 260 (754)
T ss_pred EECcCCccCcCChhH
Confidence 666666666666544
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.58 E-value=4.3e-15 Score=160.40 Aligned_cols=82 Identities=15% Similarity=0.304 Sum_probs=44.9
Q ss_pred ceeEEEecCcccccccccccccccccCcccccEEecCCCCcccCchhhhcCCcccEeecCCCCCccccccccccccCccc
Q 007330 240 CLRALKITGKVSWGQNSIYAIPKEKEKLVHLRYLKLSLLMREELPDIVCELFNLQTLEVEHCPRLKRLPQGIGKLVNLRH 319 (607)
Q Consensus 240 ~L~~L~L~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~ 319 (607)
.|+.|+++ +|.++.+|..+. .+|++|++++|.++.+|..+. .+|+.|+|++|. +..+|..+. .+|+.
T Consensus 200 ~L~~L~Ls------~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~-L~~LP~~l~--s~L~~ 266 (754)
T PRK15370 200 QITTLILD------NNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINR-ITELPERLP--SALQS 266 (754)
T ss_pred CCcEEEec------CCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCc-cCcCChhHh--CCCCE
Confidence 45566665 555555554432 356666666666555555442 355666666655 555555443 35566
Q ss_pred ccccccccccCcCCC
Q 007330 320 LIYYYSNLDYMPKGF 334 (607)
Q Consensus 320 L~~~~~~l~~lp~~i 334 (607)
|++++|++..+|..+
T Consensus 267 L~Ls~N~L~~LP~~l 281 (754)
T PRK15370 267 LDLFHNKISCLPENL 281 (754)
T ss_pred EECcCCccCcccccc
Confidence 666566665555543
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.57 E-value=4.9e-17 Score=135.99 Aligned_cols=151 Identities=28% Similarity=0.371 Sum_probs=85.7
Q ss_pred ccccccccccccCcccccEEecCCCCcccCchhhhcCCcccEeecCCCCCccccccccccccCcccccccccccc--cCc
Q 007330 254 QNSIYAIPKEKEKLVHLRYLKLSLLMREELPDIVCELFNLQTLEVEHCPRLKRLPQGIGKLVNLRHLIYYYSNLD--YMP 331 (607)
Q Consensus 254 ~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~l~--~lp 331 (607)
++.+..+|..+..+.+|+.|++.+|+++++|.+++.+++|++|++.-|+ +..+|.+++.++.|+.||+..|++. .+|
T Consensus 42 HNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~levldltynnl~e~~lp 120 (264)
T KOG0617|consen 42 HNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALEVLDLTYNNLNENSLP 120 (264)
T ss_pred cCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh-hhcCccccCCCchhhhhhccccccccccCC
Confidence 5555555555555555555555555555555555555555555555544 5555555555555555555554442 233
Q ss_pred CCCCCCCCCCccCcEEecCCccCCCcccccccccccccCceEEEeccCCCCCHhHHHHHHhcCCCCCcceEEEecCCCCC
Q 007330 332 KGFERLTCLRTLTEFVVSGGKYSGKACNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAELEKKRNVVDLGLWFDKDEEG 411 (607)
Q Consensus 332 ~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 411 (607)
..+..++.|+.|. ++.++
T Consensus 121 gnff~m~tlraly---l~dnd----------------------------------------------------------- 138 (264)
T KOG0617|consen 121 GNFFYMTTLRALY---LGDND----------------------------------------------------------- 138 (264)
T ss_pred cchhHHHHHHHHH---hcCCC-----------------------------------------------------------
Confidence 3333333222221 33222
Q ss_pred chhcHHHHhhcCCCCCCcceEEEeecCCCCCCChhhhcCCCccEEEEecCCCCCcCCCCCC
Q 007330 412 EEADHEEIIEALKPHSNLVALDILGFKGKITFPKWIMSLNNLKSLHLRSCEKCEILSPLGK 472 (607)
Q Consensus 412 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~ 472 (607)
.+.+|..++.+++|+.|.+..|.... +|..++.+..|++|++.+|...-.+|.++.
T Consensus 139 ----fe~lp~dvg~lt~lqil~lrdndll~-lpkeig~lt~lrelhiqgnrl~vlppel~~ 194 (264)
T KOG0617|consen 139 ----FEILPPDVGKLTNLQILSLRDNDLLS-LPKEIGDLTRLRELHIQGNRLTVLPPELAN 194 (264)
T ss_pred ----cccCChhhhhhcceeEEeeccCchhh-CcHHHHHHHHHHHHhcccceeeecChhhhh
Confidence 23345556666777777777777777 888888888888888888865555555443
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.52 E-value=6.3e-14 Score=150.46 Aligned_cols=254 Identities=16% Similarity=0.075 Sum_probs=153.3
Q ss_pred eeEEEEEeCCCCCccccccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccccccccccCccccc
Q 007330 192 FRHSMLVLGRRASFPVSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIPKEKEKLVHLR 271 (607)
Q Consensus 192 ~r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp~~~~~l~~L~ 271 (607)
-..+.+..+.+..+|..+. ++|+.|.+.+|. ... ++. .+++|++|+++ +|.++.+|.. .++|+
T Consensus 203 ~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~--Lt~-LP~---lp~~Lk~LdLs------~N~LtsLP~l---p~sL~ 265 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLP--AHITTLVIPDNN--LTS-LPA---LPPELRTLEVS------GNQLTSLPVL---PPGLL 265 (788)
T ss_pred CcEEEcCCCCCCcCCcchh--cCCCEEEccCCc--CCC-CCC---CCCCCcEEEec------CCccCcccCc---ccccc
Confidence 4456777777777676554 478899998886 222 232 35789999998 7888888753 46888
Q ss_pred EEecCCCCcccCchhhhcCCcccEeecCCCCCccccccccccccCcccccccccccccCcCCCCCCCCCCccCcEEecCC
Q 007330 272 YLKLSLLMREELPDIVCELFNLQTLEVEHCPRLKRLPQGIGKLVNLRHLIYYYSNLDYMPKGFERLTCLRTLTEFVVSGG 351 (607)
Q Consensus 272 ~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~ 351 (607)
.|++++|.+..+|.. ..+|+.|++++|. ++.+|.. +++|+.|+++.|.+..+|.... +|+.|. ++++
T Consensus 266 ~L~Ls~N~L~~Lp~l---p~~L~~L~Ls~N~-Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp~---~L~~L~---Ls~N 332 (788)
T PRK15387 266 ELSIFSNPLTHLPAL---PSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQLASLPALPS---ELCKLW---AYNN 332 (788)
T ss_pred eeeccCCchhhhhhc---hhhcCEEECcCCc-ccccccc---ccccceeECCCCccccCCCCcc---cccccc---cccC
Confidence 999999988888763 3568888999987 8888853 4689999988888888875332 333333 4444
Q ss_pred ccCCCcccccccccccccCceEEEeccCCCCCHhHHHHHHhcCCCCCcceEEEecCCCCCchhcHHHHhhcCCCCCCcce
Q 007330 352 KYSGKACNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAELEKKRNVVDLGLWFDKDEEGEEADHEEIIEALKPHSNLVA 431 (607)
Q Consensus 352 ~~~~~~~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~ 431 (607)
.+..++. + ..+|+.|+++.|... .+|. .+++|+.
T Consensus 333 ~L~~LP~-------l----------------------------p~~Lq~LdLS~N~Ls--------~LP~---lp~~L~~ 366 (788)
T PRK15387 333 QLTSLPT-------L----------------------------PSGLQELSVSDNQLA--------SLPT---LPSELYK 366 (788)
T ss_pred ccccccc-------c----------------------------ccccceEecCCCccC--------CCCC---CCcccce
Confidence 3221110 0 024555555555431 1111 1245666
Q ss_pred EEEeecCCCCCCChhhhcCCCccEEEEecCCCCCcCCCCCCCCCCCeeEecCCcCeeeCccccCCCCCCccCCCccceee
Q 007330 432 LDILGFKGKITFPKWIMSLNNLKSLHLRSCEKCEILSPLGKLPSLETLYIAGMSGKRVGDEFFGIGSDCNIAFPKLKFLR 511 (607)
Q Consensus 432 L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 511 (607)
|++++|.+.. +|.. .++|+.|++++|.... +|.. .++|+.|++++|.++.+|. .+.+|+.|+
T Consensus 367 L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l--~s~L~~LdLS~N~LssIP~-----------l~~~L~~L~ 428 (788)
T PRK15387 367 LWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL--PSELKELMVSGNRLTSLPM-----------LPSGLLSLS 428 (788)
T ss_pred ehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc--ccCCCEEEccCCcCCCCCc-----------chhhhhhhh
Confidence 6666666554 5542 2456666666664332 3321 2456666666666554442 223456666
Q ss_pred eccccccccccccccccCcccccccCCccceeeeeccc
Q 007330 512 VVDMFEWEEWGFGITRSNVKEDVMVMPCLNYLDIQFCF 549 (607)
Q Consensus 512 l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 549 (607)
++++ .++.++.. +..+++|+.|++++|+
T Consensus 429 Ls~N-qLt~LP~s---------l~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 429 VYRN-QLTRLPES---------LIHLSSETTVNLEGNP 456 (788)
T ss_pred hccC-cccccChH---------HhhccCCCeEECCCCC
Confidence 6654 34444433 5566666666666654
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.52 E-value=2e-16 Score=132.30 Aligned_cols=160 Identities=23% Similarity=0.291 Sum_probs=102.5
Q ss_pred cCceeEEEEEeCCCCCccccccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccccccccccCcc
Q 007330 189 LEKFRHSMLVLGRRASFPVSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIPKEKEKLV 268 (607)
Q Consensus 189 ~~~~r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp~~~~~l~ 268 (607)
...+.++.++++.+..+++.+.++.+|+.|++++|. +.+ ++..++++++||.|++. -+.+..+|..|+.++
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq--ie~-lp~~issl~klr~lnvg------mnrl~~lprgfgs~p 102 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ--IEE-LPTSISSLPKLRILNVG------MNRLNILPRGFGSFP 102 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch--hhh-cChhhhhchhhhheecc------hhhhhcCccccCCCc
Confidence 345666777777776667777777777777777764 333 34446677777777776 666666777777777
Q ss_pred cccEEecCCCCc--ccCchhhhcCCcccEeecCCCCCccccccccccccCcccccccccccccCcCCCCCCCCCCccCcE
Q 007330 269 HLRYLKLSLLMR--EELPDIVCELFNLQTLEVEHCPRLKRLPQGIGKLVNLRHLIYYYSNLDYMPKGFERLTCLRTLTEF 346 (607)
Q Consensus 269 ~L~~L~L~~~~i--~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~l~~lp~~i~~l~~L~~L~~~ 346 (607)
.|++|||.+|++ ..+|..+-.+.-|+.|.|++|. ...+|..++++++||.|.++.|.+-.+|..++.++.|++|.
T Consensus 103 ~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelh-- 179 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELH-- 179 (264)
T ss_pred hhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHh--
Confidence 777777776663 3456666666666666666655 66666666666666666666666666666666666666665
Q ss_pred EecCCccCCCccccc
Q 007330 347 VVSGGKYSGKACNIE 361 (607)
Q Consensus 347 ~~~~~~~~~~~~~~~ 361 (607)
+.++.++..++.++
T Consensus 180 -iqgnrl~vlppel~ 193 (264)
T KOG0617|consen 180 -IQGNRLTVLPPELA 193 (264)
T ss_pred -cccceeeecChhhh
Confidence 55555444444333
No 21
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.46 E-value=3.9e-14 Score=155.43 Aligned_cols=323 Identities=23% Similarity=0.239 Sum_probs=205.6
Q ss_pred ccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccc--cccccc-cccCcccccEEecCCCC-cccCc
Q 007330 209 IFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNS--IYAIPK-EKEKLVHLRYLKLSLLM-REELP 284 (607)
Q Consensus 209 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~--l~~lp~-~~~~l~~L~~L~L~~~~-i~~lp 284 (607)
.......|...+.++. ... ++. -..++.|++|-+. .+. +..++. .|..++.|++|||++|. +..+|
T Consensus 519 ~~~~~~~rr~s~~~~~--~~~-~~~-~~~~~~L~tLll~------~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP 588 (889)
T KOG4658|consen 519 VKSWNSVRRMSLMNNK--IEH-IAG-SSENPKLRTLLLQ------RNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP 588 (889)
T ss_pred ccchhheeEEEEeccc--hhh-ccC-CCCCCccceEEEe------ecchhhhhcCHHHHhhCcceEEEECCCCCccCcCC
Confidence 3455778888888875 222 222 2455689999998 443 566654 37789999999999887 99999
Q ss_pred hhhhcCCcccEeecCCCCCccccccccccccCcccccccccc-cccCcCCCCCCCCCCccCcEEecCCccCCCccccccc
Q 007330 285 DIVCELFNLQTLEVEHCPRLKRLPQGIGKLVNLRHLIYYYSN-LDYMPKGFERLTCLRTLTEFVVSGGKYSGKACNIEGL 363 (607)
Q Consensus 285 ~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~-l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l 363 (607)
.+|++|-+|++|+++++. +..+|.++++|++|.+|++..+. +..+|.....|++|++|..+.-. .......+.++
T Consensus 589 ~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~---~~~~~~~l~el 664 (889)
T KOG4658|consen 589 SSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA---LSNDKLLLKEL 664 (889)
T ss_pred hHHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc---cccchhhHHhh
Confidence 999999999999999988 99999999999999999966544 34444445558999988855433 22224455666
Q ss_pred ccccccCceEEEeccCCCCCHhHHHHHHhcCCCCCcceEEEecCCCCCchhcHHHHhhcCCCCCCcceEEEeecCCCCCC
Q 007330 364 RHLNHLGGVFRITGLGNVTDVDEAENAELEKKRNVVDLGLWFDKDEEGEEADHEEIIEALKPHSNLVALDILGFKGKITF 443 (607)
Q Consensus 364 ~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l 443 (607)
.+|+.|. .+.+...+. .....+..+..|.++...-... .......+..+..+.+|+.|.+.+|......
T Consensus 665 ~~Le~L~-~ls~~~~s~------~~~e~l~~~~~L~~~~~~l~~~----~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~ 733 (889)
T KOG4658|consen 665 ENLEHLE-NLSITISSV------LLLEDLLGMTRLRSLLQSLSIE----GCSKRTLISSLGSLGNLEELSILDCGISEIV 733 (889)
T ss_pred hcccchh-hheeecchh------HhHhhhhhhHHHHHHhHhhhhc----ccccceeecccccccCcceEEEEcCCCchhh
Confidence 6666665 444432211 1112222333333221111100 0012334556677889999999998876533
Q ss_pred Chhhh-----c-CCCccEEEEecCCCCCcCCCCCCCCCCCeeEecCCc-CeeeCccccCC--CCCCccCCCcccee-eec
Q 007330 444 PKWIM-----S-LNNLKSLHLRSCEKCEILSPLGKLPSLETLYIAGMS-GKRVGDEFFGI--GSDCNIAFPKLKFL-RVV 513 (607)
Q Consensus 444 p~~l~-----~-l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~-~~~~~~~~~~~--~~~~~~~~~~L~~L-~l~ 513 (607)
..|.. . ++++..+.+.+|.....+.+....|+|+.|++..|. ++.+....-.. .......|+++..+ .+.
T Consensus 734 ~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~ 813 (889)
T KOG4658|consen 734 IEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLC 813 (889)
T ss_pred cccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeee
Confidence 33322 2 556777777777777777777788899999999888 44432211100 00011356677777 466
Q ss_pred cccccccccccccccCcccccccCCccceeeeecccCccccCCCCCCCCCcCeEEEecC
Q 007330 514 DMFEWEEWGFGITRSNVKEDVMVMPCLNYLDIQFCFKLKALPGYLLEITALEKLEILCC 572 (607)
Q Consensus 514 ~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c 572 (607)
+.+.+..+... ...+++|+.+.+..||+++.+| .+.++.+.+|
T Consensus 814 ~l~~l~~i~~~---------~l~~~~l~~~~ve~~p~l~~~P-------~~~~~~i~~~ 856 (889)
T KOG4658|consen 814 SLGGLPQLYWL---------PLSFLKLEELIVEECPKLGKLP-------LLSTLTIVGC 856 (889)
T ss_pred cCCCCceeEec---------ccCccchhheehhcCcccccCc-------cccccceecc
Confidence 66666555433 3356668888888888887766 3445556665
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.44 E-value=5.2e-15 Score=139.99 Aligned_cols=134 Identities=22% Similarity=0.265 Sum_probs=106.4
Q ss_pred CCCCCccccccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccccc-cccccCcccccEEecCC-
Q 007330 200 GRRASFPVSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAI-PKEKEKLVHLRYLKLSL- 277 (607)
Q Consensus 200 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~l-p~~~~~l~~L~~L~L~~- 277 (607)
....++|..+ .+....+.+..|. +..++++.|+.+++||.|||+ +|.|+.| |..|.++..|-.|-+.+
T Consensus 56 ~GL~eVP~~L--P~~tveirLdqN~--I~~iP~~aF~~l~~LRrLdLS------~N~Is~I~p~AF~GL~~l~~Lvlyg~ 125 (498)
T KOG4237|consen 56 KGLTEVPANL--PPETVEIRLDQNQ--ISSIPPGAFKTLHRLRRLDLS------KNNISFIAPDAFKGLASLLSLVLYGN 125 (498)
T ss_pred CCcccCcccC--CCcceEEEeccCC--cccCChhhccchhhhceeccc------ccchhhcChHhhhhhHhhhHHHhhcC
Confidence 3444555544 3456677787776 667788899999999999999 9999988 88899999988887777
Q ss_pred CCcccCchh-hhcCCcccEeecCCCCCccc-cccccccccCcccccccccccccCcC-CCCCCCCCCccC
Q 007330 278 LMREELPDI-VCELFNLQTLEVEHCPRLKR-LPQGIGKLVNLRHLIYYYSNLDYMPK-GFERLTCLRTLT 344 (607)
Q Consensus 278 ~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~-lp~~i~~l~~L~~L~~~~~~l~~lp~-~i~~l~~L~~L~ 344 (607)
|.|+++|.. +++|..|+.|.+.-|. +.- ..+.+..|++|..|.+..|.+..++. .+..+.+++++.
T Consensus 126 NkI~~l~k~~F~gL~slqrLllNan~-i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlh 194 (498)
T KOG4237|consen 126 NKITDLPKGAFGGLSSLQRLLLNANH-INCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLH 194 (498)
T ss_pred CchhhhhhhHhhhHHHHHHHhcChhh-hcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHh
Confidence 779999986 7899999999999887 554 44567899999999999999888887 466666666665
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.28 E-value=5.6e-13 Score=133.59 Aligned_cols=40 Identities=23% Similarity=0.112 Sum_probs=17.2
Q ss_pred cccCcccccEEecCCCCcc-cCchhhhcCCc---ccEeecCCCC
Q 007330 263 EKEKLVHLRYLKLSLLMRE-ELPDIVCELFN---LQTLEVEHCP 302 (607)
Q Consensus 263 ~~~~l~~L~~L~L~~~~i~-~lp~~i~~L~~---L~~L~L~~~~ 302 (607)
.+..+++|++|++++|.+. ..+..+..+.+ |++|++++|.
T Consensus 76 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~ 119 (319)
T cd00116 76 GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNG 119 (319)
T ss_pred HHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCc
Confidence 3444445555555554433 22222333333 5555555444
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.22 E-value=3.4e-12 Score=127.95 Aligned_cols=272 Identities=19% Similarity=0.168 Sum_probs=147.0
Q ss_pred hhhccCCceeEEEecCcccccccccccccccccCcccccEEecCCCCccc-------CchhhhcCCcccEeecCCCCCcc
Q 007330 233 GLFDYLTCLRALKITGKVSWGQNSIYAIPKEKEKLVHLRYLKLSLLMREE-------LPDIVCELFNLQTLEVEHCPRLK 305 (607)
Q Consensus 233 ~~~~~l~~L~~L~L~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~-------lp~~i~~L~~L~~L~L~~~~~l~ 305 (607)
..+..+..|++|+++++. ++...+..++..+...+.|++|+++++.+.. ++..+.++++|+.|++++|....
T Consensus 17 ~~~~~l~~L~~l~l~~~~-l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 95 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNT-LGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGP 95 (319)
T ss_pred HHHHHHhhccEEeecCCC-CcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCCh
Confidence 335555567777777321 1111123345555566667777777665442 33445667777788877776333
Q ss_pred ccccccccccC---ccccccccccccc-----CcCCCCCC-CCCCccCcEEecCCccCCCc--ccccccccccccCceEE
Q 007330 306 RLPQGIGKLVN---LRHLIYYYSNLDY-----MPKGFERL-TCLRTLTEFVVSGGKYSGKA--CNIEGLRHLNHLGGVFR 374 (607)
Q Consensus 306 ~lp~~i~~l~~---L~~L~~~~~~l~~-----lp~~i~~l-~~L~~L~~~~~~~~~~~~~~--~~~~~l~~L~~L~~~l~ 374 (607)
..+..+..+.+ |++|+++++.+.. +...+..+ ++|+.|. ++++.+.+.. .....+..++.++ .+.
T Consensus 96 ~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~---L~~n~l~~~~~~~~~~~~~~~~~L~-~L~ 171 (319)
T cd00116 96 DGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLV---LGRNRLEGASCEALAKALRANRDLK-ELN 171 (319)
T ss_pred hHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEE---cCCCcCCchHHHHHHHHHHhCCCcC-EEE
Confidence 44444544444 7777776666542 22223333 4444443 6555543211 1112233333344 555
Q ss_pred EeccCCCCCHhHHHHHHhcCCCCCcceEEEecCCCCCchhcHHHHhhcCCCCCCcceEEEeecCCCCCCChhhh-----c
Q 007330 375 ITGLGNVTDVDEAENAELEKKRNVVDLGLWFDKDEEGEEADHEEIIEALKPHSNLVALDILGFKGKITFPKWIM-----S 449 (607)
Q Consensus 375 i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~l~-----~ 449 (607)
+.++.-...........+...++|+.|+++.|.... .....+...+..+++|+.|++++|.....-+..+. .
T Consensus 172 l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~---~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~ 248 (319)
T cd00116 172 LANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTD---EGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSP 248 (319)
T ss_pred CcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccCh---HHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhcc
Confidence 554321111112233445566788888888776431 12234555666778899999998876531122222 2
Q ss_pred CCCccEEEEecCCCCC-----cCCCCCCCCCCCeeEecCCcCeeeCccccCCCCCCccCC-Cccceeeeccc
Q 007330 450 LNNLKSLHLRSCEKCE-----ILSPLGKLPSLETLYIAGMSGKRVGDEFFGIGSDCNIAF-PKLKFLRVVDM 515 (607)
Q Consensus 450 l~~L~~L~L~~~~~~~-----~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~ 515 (607)
.+.|++|++++|.... ....+..+++|+++++++|.+...+...+... ...+ +.|++|++.+.
T Consensus 249 ~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 249 NISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAES---LLEPGNELESLWVKDD 317 (319)
T ss_pred CCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHH---HhhcCCchhhcccCCC
Confidence 3789999999886431 12234556889999999988554432222110 0144 67888887664
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.14 E-value=2.1e-12 Score=122.64 Aligned_cols=273 Identities=17% Similarity=0.113 Sum_probs=175.4
Q ss_pred cCceeEEEEEeCCCCCcc-ccccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCccccccccccccc-ccccC
Q 007330 189 LEKFRHSMLVLGRRASFP-VSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIP-KEKEK 266 (607)
Q Consensus 189 ~~~~r~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp-~~~~~ 266 (607)
+.....+.+..+.+..+| .+|..+++||.|++++|. +..+-+..|..++.|-.|-+.+ ++.|+.+| ..|++
T Consensus 66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~--Is~I~p~AF~GL~~l~~Lvlyg-----~NkI~~l~k~~F~g 138 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNN--ISFIAPDAFKGLASLLSLVLYG-----NNKITDLPKGAFGG 138 (498)
T ss_pred CCcceEEEeccCCcccCChhhccchhhhceecccccc--hhhcChHhhhhhHhhhHHHhhc-----CCchhhhhhhHhhh
Confidence 777888999999999886 578899999999999997 6666788899999998888874 68999998 45889
Q ss_pred cccccEEecCCCCcccCchh-hhcCCcccEeecCCCCCcccccc-ccccccCcccccccccccc---cCc----------
Q 007330 267 LVHLRYLKLSLLMREELPDI-VCELFNLQTLEVEHCPRLKRLPQ-GIGKLVNLRHLIYYYSNLD---YMP---------- 331 (607)
Q Consensus 267 l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~~~~~~l~---~lp---------- 331 (607)
|..|+-|.+.-|.+.-++.. +..|++|..|.+.+|. +..++. .+..+.+++.+.+..|.+. .+|
T Consensus 139 L~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ 217 (498)
T KOG4237|consen 139 LSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNP 217 (498)
T ss_pred HHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchhhhHHhhch
Confidence 99999999999998877654 8899999999999987 888887 6788999999986655421 111
Q ss_pred CCCCCCCCCCccCcEEecCCccCCCcccccccccccccCceEEEeccCCCCCHhHHHHHHhcCCCCCcceEEEecCCCCC
Q 007330 332 KGFERLTCLRTLTEFVVSGGKYSGKACNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAELEKKRNVVDLGLWFDKDEEG 411 (607)
Q Consensus 332 ~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 411 (607)
-..+.....+.........+.+.. ..... .++.++..+.. ............+..+++|++|+++.|...
T Consensus 218 ietsgarc~~p~rl~~~Ri~q~~a-~kf~c---~~esl~s~~~~----~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~-- 287 (498)
T KOG4237|consen 218 IETSGARCVSPYRLYYKRINQEDA-RKFLC---SLESLPSRLSS----EDFPDSICPAKCFKKLPNLRKLNLSNNKIT-- 287 (498)
T ss_pred hhcccceecchHHHHHHHhcccch-hhhhh---hHHhHHHhhcc----ccCcCCcChHHHHhhcccceEeccCCCccc--
Confidence 111111111111111111111000 00000 01111100000 000111222345777788888888877652
Q ss_pred chhcHHHHhhcCCCCCCcceEEEeecCCCCCCCh-hhhcCCCccEEEEecCCCCCcC-CCCCCCCCCCeeEecCCc
Q 007330 412 EEADHEEIIEALKPHSNLVALDILGFKGKITFPK-WIMSLNNLKSLHLRSCEKCEIL-SPLGKLPSLETLYIAGMS 485 (607)
Q Consensus 412 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~L~~~~~~~~~-~~l~~l~~L~~L~L~~~~ 485 (607)
..-..++.....++.|.+..|.+.. +-. .+..+..|+.|+|.+|+..... ..+..+.+|.+|.+-.|+
T Consensus 288 -----~i~~~aFe~~a~l~eL~L~~N~l~~-v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 288 -----RIEDGAFEGAAELQELYLTRNKLEF-VSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred -----hhhhhhhcchhhhhhhhcCcchHHH-HHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 2333456666777777777777655 322 2336777888888877654433 336667777777776554
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.06 E-value=7.3e-12 Score=124.35 Aligned_cols=213 Identities=23% Similarity=0.259 Sum_probs=151.8
Q ss_pred EEEEEeCCCCCccc--cccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccccccccccCccccc
Q 007330 194 HSMLVLGRRASFPV--SIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIPKEKEKLVHLR 271 (607)
Q Consensus 194 ~l~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp~~~~~l~~L~ 271 (607)
++.+++.....++. .-..+..-...+++.|+ ... ++.-++.|-.|..|.|. .|.+..+|..++++..|.
T Consensus 54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR--~~e-lp~~~~~f~~Le~liLy------~n~~r~ip~~i~~L~~lt 124 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNR--FSE-LPEEACAFVSLESLILY------HNCIRTIPEAICNLEALT 124 (722)
T ss_pred ccccccchhhcCCCccccccccchhhhhccccc--ccc-CchHHHHHHHHHHHHHH------hccceecchhhhhhhHHH
Confidence 34444444444432 12344445556677775 323 44457788889999999 899999999999999999
Q ss_pred EEecCCCCcccCchhhhcCCcccEeecCCCCCccccccccccccCcccccccccccccCcCCCCCCCCCCccCcEEecCC
Q 007330 272 YLKLSLLMREELPDIVCELFNLQTLEVEHCPRLKRLPQGIGKLVNLRHLIYYYSNLDYMPKGFERLTCLRTLTEFVVSGG 351 (607)
Q Consensus 272 ~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~ 351 (607)
||+|+.|++..+|..++.|+ |+.|-+++|+ ++.+|..|+.+..|.+||.++|.+..+|..++.+++|+.|. +..+
T Consensus 125 ~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~---vrRn 199 (722)
T KOG0532|consen 125 FLDLSSNQLSHLPDGLCDLP-LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLN---VRRN 199 (722)
T ss_pred HhhhccchhhcCChhhhcCc-ceeEEEecCc-cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHH---Hhhh
Confidence 99999999999999998877 8999999987 99999999999999999999999999999999999888887 5555
Q ss_pred ccCCCcccccccccccccCceEEEeccCCCCCHhHHHHHHhcCCCCCcceEEEecCCCCCchhcHHHHhhcCCCCCCcce
Q 007330 352 KYSGKACNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAELEKKRNVVDLGLWFDKDEEGEEADHEEIIEALKPHSNLVA 431 (607)
Q Consensus 352 ~~~~~~~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~ 431 (607)
.+..++..+. . -.|..|+++.|.. ..+|-.+..++.|+.
T Consensus 200 ~l~~lp~El~---~------------------------------LpLi~lDfScNki--------s~iPv~fr~m~~Lq~ 238 (722)
T KOG0532|consen 200 HLEDLPEELC---S------------------------------LPLIRLDFSCNKI--------SYLPVDFRKMRHLQV 238 (722)
T ss_pred hhhhCCHHHh---C------------------------------CceeeeecccCce--------eecchhhhhhhhhee
Confidence 5332222211 1 1244555555542 345666777777888
Q ss_pred EEEeecCCCCCCChhhh---cCCCccEEEEecCC
Q 007330 432 LDILGFKGKITFPKWIM---SLNNLKSLHLRSCE 462 (607)
Q Consensus 432 L~l~~~~~~~~lp~~l~---~l~~L~~L~L~~~~ 462 (607)
|.|.+|.+.. =|..+. ...=.++|+..-|.
T Consensus 239 l~LenNPLqS-PPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 239 LQLENNPLQS-PPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred eeeccCCCCC-ChHHHHhccceeeeeeecchhcc
Confidence 8887777766 343333 23334666666663
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.95 E-value=5.6e-10 Score=115.22 Aligned_cols=107 Identities=31% Similarity=0.362 Sum_probs=89.9
Q ss_pred hccCCceeEEEecCcccccccccccccccccCcc-cccEEecCCCCcccCchhhhcCCcccEeecCCCCCcccccccccc
Q 007330 235 FDYLTCLRALKITGKVSWGQNSIYAIPKEKEKLV-HLRYLKLSLLMREELPDIVCELFNLQTLEVEHCPRLKRLPQGIGK 313 (607)
Q Consensus 235 ~~~l~~L~~L~L~~~~~~~~~~l~~lp~~~~~l~-~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~ 313 (607)
+..++.+..|++. ++.+..+|.....+. +|++|+++++.+..+|..++.+++|+.|++++|. +.++|...+.
T Consensus 112 ~~~~~~l~~L~l~------~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~ 184 (394)
T COG4886 112 LLELTNLTSLDLD------NNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSN 184 (394)
T ss_pred hhcccceeEEecC------CcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhhhhhhh
Confidence 4455789999999 889999988887775 9999999999999998889999999999999988 8999887778
Q ss_pred ccCcccccccccccccCcCCCCCCCCCCccCcEEecCC
Q 007330 314 LVNLRHLIYYYSNLDYMPKGFERLTCLRTLTEFVVSGG 351 (607)
Q Consensus 314 l~~L~~L~~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~ 351 (607)
+++|+.|+++.|.+..+|..++....|+.|. ++.+
T Consensus 185 ~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~---~~~N 219 (394)
T COG4886 185 LSNLNNLDLSGNKISDLPPEIELLSALEELD---LSNN 219 (394)
T ss_pred hhhhhheeccCCccccCchhhhhhhhhhhhh---hcCC
Confidence 9999999999999999988766666666665 5544
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.92 E-value=4.5e-11 Score=118.84 Aligned_cols=189 Identities=23% Similarity=0.303 Sum_probs=129.5
Q ss_pred eEEEecCcccccccccccccccccCcccccEEecCCCCcccCchhhhcCCcccEeecCCCCCccccccccccccCccccc
Q 007330 242 RALKITGKVSWGQNSIYAIPKEKEKLVHLRYLKLSLLMREELPDIVCELFNLQTLEVEHCPRLKRLPQGIGKLVNLRHLI 321 (607)
Q Consensus 242 ~~L~L~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~ 321 (607)
...||+ .|.+.++|..++.+..|+.|.|..|.+..+|..+++|..|.+|||+.|. +..+|..+..| -|+.|-
T Consensus 78 ~~aDls------rNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~l-pLkvli 149 (722)
T KOG0532|consen 78 VFADLS------RNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDL-PLKVLI 149 (722)
T ss_pred hhhhcc------ccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch-hhcCChhhhcC-cceeEE
Confidence 445666 7788888888888888888888888888888888888888888888887 88888888766 478888
Q ss_pred ccccccccCcCCCCCCCCCCccCcEEecCCccCCCcccccccccccccCceEEEeccCCCCCHhHHHHHHhcCCCCCcce
Q 007330 322 YYYSNLDYMPKGFERLTCLRTLTEFVVSGGKYSGKACNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAELEKKRNVVDL 401 (607)
Q Consensus 322 ~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L 401 (607)
++.|+++.+|+.++.+..|..|+ ++.|.+...+..+..+. +|+.|
T Consensus 150 ~sNNkl~~lp~~ig~~~tl~~ld---~s~nei~slpsql~~l~--------------------------------slr~l 194 (722)
T KOG0532|consen 150 VSNNKLTSLPEEIGLLPTLAHLD---VSKNEIQSLPSQLGYLT--------------------------------SLRDL 194 (722)
T ss_pred EecCccccCCcccccchhHHHhh---hhhhhhhhchHHhhhHH--------------------------------HHHHH
Confidence 88888888888888555555554 56555443333333333 33333
Q ss_pred EEEecCCCCCchhcHHHHhhcCCCCCCcceEEEeecCCCCCCChhhhcCCCccEEEEecCCCCCcCCC-C---CCCCCCC
Q 007330 402 GLWFDKDEEGEEADHEEIIEALKPHSNLVALDILGFKGKITFPKWIMSLNNLKSLHLRSCEKCEILSP-L---GKLPSLE 477 (607)
Q Consensus 402 ~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~-l---~~l~~L~ 477 (607)
.+..|. ...+|+.+. .-.|.+|++++|++.. +|-.+..+..|++|.|.+|.... +|. + |...=-+
T Consensus 195 ~vrRn~--------l~~lp~El~-~LpLi~lDfScNkis~-iPv~fr~m~~Lq~l~LenNPLqS-PPAqIC~kGkVHIFK 263 (722)
T KOG0532|consen 195 NVRRNH--------LEDLPEELC-SLPLIRLDFSCNKISY-LPVDFRKMRHLQVLQLENNPLQS-PPAQICEKGKVHIFK 263 (722)
T ss_pred HHhhhh--------hhhCCHHHh-CCceeeeecccCceee-cchhhhhhhhheeeeeccCCCCC-ChHHHHhccceeeee
Confidence 333332 234555555 3467888888888877 88888888888888888885333 332 2 2333345
Q ss_pred eeEecCC
Q 007330 478 TLYIAGM 484 (607)
Q Consensus 478 ~L~L~~~ 484 (607)
+|++.-|
T Consensus 264 yL~~qA~ 270 (722)
T KOG0532|consen 264 YLSTQAC 270 (722)
T ss_pred eecchhc
Confidence 6666665
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.89 E-value=1.2e-09 Score=96.45 Aligned_cols=132 Identities=22% Similarity=0.174 Sum_probs=49.6
Q ss_pred cccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccccccccccCcccccEEecCCCCcccCchhh
Q 007330 208 SIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIPKEKEKLVHLRYLKLSLLMREELPDIV 287 (607)
Q Consensus 208 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i 287 (607)
...++.+++.|++.++. +.. +...-..+.+|++|+++ +|.++.++ .+..+++|+.|++++|.|+++++.+
T Consensus 14 ~~~n~~~~~~L~L~~n~--I~~-Ie~L~~~l~~L~~L~Ls------~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l 83 (175)
T PF14580_consen 14 QYNNPVKLRELNLRGNQ--IST-IENLGATLDKLEVLDLS------NNQITKLE-GLPGLPRLKTLDLSNNRISSISEGL 83 (175)
T ss_dssp -------------------------S--TT-TT--EEE-T------TS--S--T-T----TT--EEE--SS---S-CHHH
T ss_pred ccccccccccccccccc--ccc-ccchhhhhcCCCEEECC------CCCCcccc-CccChhhhhhcccCCCCCCccccch
Confidence 34455567888888775 222 23311256788888888 78888774 5777888888888888888886655
Q ss_pred -hcCCcccEeecCCCCCccccc--cccccccCcccccccccccccCcC----CCCCCCCCCccCcEEecC
Q 007330 288 -CELFNLQTLEVEHCPRLKRLP--QGIGKLVNLRHLIYYYSNLDYMPK----GFERLTCLRTLTEFVVSG 350 (607)
Q Consensus 288 -~~L~~L~~L~L~~~~~l~~lp--~~i~~l~~L~~L~~~~~~l~~lp~----~i~~l~~L~~L~~~~~~~ 350 (607)
..+++|++|++++|. +.++- ..+..+++|++|++.+|.+...+. -+..+++|+.|+...+..
T Consensus 84 ~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~~ 152 (175)
T PF14580_consen 84 DKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVTE 152 (175)
T ss_dssp HHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETTS
T ss_pred HHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEccH
Confidence 368888888888876 55442 345677888888887777765442 245677777777655544
No 30
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.84 E-value=2.6e-10 Score=109.47 Aligned_cols=307 Identities=17% Similarity=0.196 Sum_probs=179.1
Q ss_pred CceeEEEecCcccccccccccccccccCcccccEEecCCCC-cccC--chhhhcCCcccEeecCCCCCccccc--ccccc
Q 007330 239 TCLRALKITGKVSWGQNSIYAIPKEKEKLVHLRYLKLSLLM-REEL--PDIVCELFNLQTLEVEHCPRLKRLP--QGIGK 313 (607)
Q Consensus 239 ~~L~~L~L~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~-i~~l--p~~i~~L~~L~~L~L~~~~~l~~lp--~~i~~ 313 (607)
..||.|.+.||-.++...+..+ ...+++++.|++.+|. +++- -..-..+++|++|++..|..++..- .-...
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~---~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~g 214 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTF---ASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEG 214 (483)
T ss_pred cccccccccccccCCcchhhHH---hhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHh
Confidence 4688999998877777666554 3467788888888887 3322 1123578999999999988777532 12356
Q ss_pred ccCccccccccc-ccccCcCCCCCCCCCCccCcEEecCCccCCCcccccccccccccCceEEEeccCCCCCHhHHHHHHh
Q 007330 314 LVNLRHLIYYYS-NLDYMPKGFERLTCLRTLTEFVVSGGKYSGKACNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAEL 392 (607)
Q Consensus 314 l~~L~~L~~~~~-~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l 392 (607)
+++|.+|+++++ .+.. .++ +.+ ...+..+..+ ...+|..... +.....-
T Consensus 215 C~kL~~lNlSwc~qi~~--~gv------~~~----------------~rG~~~l~~~----~~kGC~e~~l--e~l~~~~ 264 (483)
T KOG4341|consen 215 CRKLKYLNLSWCPQISG--NGV------QAL----------------QRGCKELEKL----SLKGCLELEL--EALLKAA 264 (483)
T ss_pred hhhHHHhhhccCchhhc--Ccc------hHH----------------hccchhhhhh----hhcccccccH--HHHHHHh
Confidence 788888885543 2222 111 111 1111111111 0111211111 1111111
Q ss_pred cCCCCCcceEEEecCCCCCchhcHHHHhhcCCCCCCcceEEEeecCCCCCCChh-hh-cCCCccEEEEecCCCCCc--CC
Q 007330 393 EKKRNVVDLGLWFDKDEEGEEADHEEIIEALKPHSNLVALDILGFKGKITFPKW-IM-SLNNLKSLHLRSCEKCEI--LS 468 (607)
Q Consensus 393 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~-l~-~l~~L~~L~L~~~~~~~~--~~ 468 (607)
..+..+.++++..|...+ +..+...-.....|+.|+.+++...+..+-| ++ ..++|+.|.+.+|+.... +.
T Consensus 265 ~~~~~i~~lnl~~c~~lT-----D~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft 339 (483)
T KOG4341|consen 265 AYCLEILKLNLQHCNQLT-----DEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFT 339 (483)
T ss_pred ccChHhhccchhhhcccc-----chHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhh
Confidence 223334444444443211 2233333445678888888888775533333 22 778999999999975442 22
Q ss_pred CC-CCCCCCCeeEecCCc-CeeeCccccCCCCCCccCCCccceeeeccccccccccccccccCcccccccCCccceeeee
Q 007330 469 PL-GKLPSLETLYIAGMS-GKRVGDEFFGIGSDCNIAFPKLKFLRVVDMFEWEEWGFGITRSNVKEDVMVMPCLNYLDIQ 546 (607)
Q Consensus 469 ~l-~~l~~L~~L~L~~~~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 546 (607)
.+ .+++.|+.+++.+|. +.+- . +... ...+|.|+.|.+++|..+++-... .......++..|+.+.+.
T Consensus 340 ~l~rn~~~Le~l~~e~~~~~~d~--t-L~sl---s~~C~~lr~lslshce~itD~gi~----~l~~~~c~~~~l~~lEL~ 409 (483)
T KOG4341|consen 340 MLGRNCPHLERLDLEECGLITDG--T-LASL---SRNCPRLRVLSLSHCELITDEGIR----HLSSSSCSLEGLEVLELD 409 (483)
T ss_pred hhhcCChhhhhhcccccceehhh--h-Hhhh---ccCCchhccCChhhhhhhhhhhhh----hhhhccccccccceeeec
Confidence 23 468899999999887 3222 1 1111 137899999999998766544100 011125678899999999
Q ss_pred cccCccc-cCCCCCCCCCcCeEEEecCcchhHhhhcCCCCCCCcccccCeeEeC
Q 007330 547 FCFKLKA-LPGYLLEITALEKLEILCCPILEQRYRKGTGEDWAKVAHVPTITIN 599 (607)
Q Consensus 547 ~c~~l~~-lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ip~~~~~ 599 (607)
+||.+.. .-..+..+++|+.+++.+|..+.+.-.+ ...+|.|++.+.
T Consensus 410 n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~------~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 410 NCPLITDATLEHLSICRNLERIELIDCQDVTKEAIS------RFATHLPNIKVH 457 (483)
T ss_pred CCCCchHHHHHHHhhCcccceeeeechhhhhhhhhH------HHHhhCccceeh
Confidence 9998765 3355667889999999999987754322 334555555443
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=1.1e-09 Score=105.91 Aligned_cols=220 Identities=17% Similarity=0.142 Sum_probs=131.8
Q ss_pred cccccccccCcccccEEecCCCCcccCch--hhhcCCcccEeecCCCC--CccccccccccccCcccccccccccccCcC
Q 007330 257 IYAIPKEKEKLVHLRYLKLSLLMREELPD--IVCELFNLQTLEVEHCP--RLKRLPQGIGKLVNLRHLIYYYSNLDYMPK 332 (607)
Q Consensus 257 l~~lp~~~~~l~~L~~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~--~l~~lp~~i~~l~~L~~L~~~~~~l~~lp~ 332 (607)
+.++...=+++++||...|.++.+...+. ....|++++.|||+.|- ++..+-.....|++|+.|+++.|.+...-.
T Consensus 110 fDki~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~ 189 (505)
T KOG3207|consen 110 FDKIAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS 189 (505)
T ss_pred HHHHHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcc
Confidence 33444445578888888888888777763 57788999999999874 122343445678888888888776643211
Q ss_pred CCCCCCCCCccCcEEecCCccCCCcccccccccccccCceEEEeccCCCCCHhHHHHHHhcCCCCCcceEEEecCCCCCc
Q 007330 333 GFERLTCLRTLTEFVVSGGKYSGKACNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAELEKKRNVVDLGLWFDKDEEGE 412 (607)
Q Consensus 333 ~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 412 (607)
+.-. . .+++|+.|.++.|+..
T Consensus 190 s~~~------~--------------------------------------------------~l~~lK~L~l~~CGls--- 210 (505)
T KOG3207|consen 190 SNTT------L--------------------------------------------------LLSHLKQLVLNSCGLS--- 210 (505)
T ss_pred ccch------h--------------------------------------------------hhhhhheEEeccCCCC---
Confidence 1000 0 1123333444444331
Q ss_pred hhcHHHHhhcCCCCCCcceEEEeecCCCCCCChhhhcCCCccEEEEecCCCCCc--CCCCCCCCCCCeeEecCCcCeeeC
Q 007330 413 EADHEEIIEALKPHSNLVALDILGFKGKITFPKWIMSLNNLKSLHLRSCEKCEI--LSPLGKLPSLETLYIAGMSGKRVG 490 (607)
Q Consensus 413 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~--~~~l~~l~~L~~L~L~~~~~~~~~ 490 (607)
-..+...+..+++|+.|.+.+|.....--.....++.|+.|+|++|..... .+..+.+|.|..|+++.|.+.++.
T Consensus 211 ---~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~ 287 (505)
T KOG3207|consen 211 ---WKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIA 287 (505)
T ss_pred ---HHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhc
Confidence 123333444567777777777743221222234667888899988875553 356788999999999888765553
Q ss_pred ccccCCCCCCccCCCccceeeeccccccccccccccccCcccccccCCccceeeeec
Q 007330 491 DEFFGIGSDCNIAFPKLKFLRVVDMFEWEEWGFGITRSNVKEDVMVMPCLNYLDIQF 547 (607)
Q Consensus 491 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 547 (607)
.--.+.. .....||+|++|.+..+ ++.+|..- ..+..+++|+.|.+-.
T Consensus 288 ~~d~~s~-~kt~~f~kL~~L~i~~N-~I~~w~sl-------~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 288 EPDVESL-DKTHTFPKLEYLNISEN-NIRDWRSL-------NHLRTLENLKHLRITL 335 (505)
T ss_pred CCCccch-hhhcccccceeeecccC-cccccccc-------chhhccchhhhhhccc
Confidence 2111110 01147999999999987 44444411 1144667788877654
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.79 E-value=4e-09 Score=93.05 Aligned_cols=122 Identities=25% Similarity=0.214 Sum_probs=53.5
Q ss_pred cCceeEEEEEeCCCCCcccccc-CCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccccccccc-cC
Q 007330 189 LEKFRHSMLVLGRRASFPVSIF-KAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIPKEK-EK 266 (607)
Q Consensus 189 ~~~~r~l~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp~~~-~~ 266 (607)
+.+.|.|.+.++.+..+ +.+. .+.+|+.|++++|. +.. +.+ +..++.|++|+++ +|.++.++..+ ..
T Consensus 18 ~~~~~~L~L~~n~I~~I-e~L~~~l~~L~~L~Ls~N~--I~~-l~~-l~~L~~L~~L~L~------~N~I~~i~~~l~~~ 86 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTI-ENLGATLDKLEVLDLSNNQ--ITK-LEG-LPGLPRLKTLDLS------NNRISSISEGLDKN 86 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS----S---TT-----TT--EEE--------SS---S-CHHHHHH
T ss_pred ccccccccccccccccc-cchhhhhcCCCEEECCCCC--Ccc-ccC-ccChhhhhhcccC------CCCCCccccchHHh
Confidence 55679999999998874 3444 57899999999996 333 444 7789999999999 99999986555 46
Q ss_pred cccccEEecCCCCcccCch--hhhcCCcccEeecCCCCCcccccc----ccccccCcccccc
Q 007330 267 LVHLRYLKLSLLMREELPD--IVCELFNLQTLEVEHCPRLKRLPQ----GIGKLVNLRHLIY 322 (607)
Q Consensus 267 l~~L~~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~~l~~lp~----~i~~l~~L~~L~~ 322 (607)
+++|+.|++++|.|.++.+ .+..+++|++|++.+|+ +..-+. .+..+++|+.||.
T Consensus 87 lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 87 LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETT
T ss_pred CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCC
Confidence 8999999999999876643 47789999999999998 665543 3678999999993
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.78 E-value=4.5e-09 Score=108.48 Aligned_cols=193 Identities=27% Similarity=0.354 Sum_probs=138.7
Q ss_pred EEEecCcccccccccccccccccCcccccEEecCCCCcccCchhhhcCC-cccEeecCCCCCccccccccccccCccccc
Q 007330 243 ALKITGKVSWGQNSIYAIPKEKEKLVHLRYLKLSLLMREELPDIVCELF-NLQTLEVEHCPRLKRLPQGIGKLVNLRHLI 321 (607)
Q Consensus 243 ~L~L~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~-~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~ 321 (607)
.+++. .+.+..-+..+..+..++.|++.++.+.++|...+.+. +|+.|++++|. +..+|..++.+++|+.|+
T Consensus 97 ~l~~~------~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~ 169 (394)
T COG4886 97 SLDLN------LNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLD 169 (394)
T ss_pred eeecc------ccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccc-hhhhhhhhhccccccccc
Confidence 46666 55553334556667889999999999999999888885 99999999988 999988899999999999
Q ss_pred ccccccccCcCCCCCCCCCCccCcEEecCCccCCCcccccccccccccCceEEEeccCCCCCHhHHHHHHhcCCCCCcce
Q 007330 322 YYYSNLDYMPKGFERLTCLRTLTEFVVSGGKYSGKACNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAELEKKRNVVDL 401 (607)
Q Consensus 322 ~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L 401 (607)
++.|.+..+|...+.+++|+.|. ++++.+...+..+. ...+|+++
T Consensus 170 l~~N~l~~l~~~~~~~~~L~~L~---ls~N~i~~l~~~~~--------------------------------~~~~L~~l 214 (394)
T COG4886 170 LSFNDLSDLPKLLSNLSNLNNLD---LSGNKISDLPPEIE--------------------------------LLSALEEL 214 (394)
T ss_pred cCCchhhhhhhhhhhhhhhhhee---ccCCccccCchhhh--------------------------------hhhhhhhh
Confidence 99999999998776777777766 77766333222211 12234455
Q ss_pred EEEecCCCCCchhcHHHHhhcCCCCCCcceEEEeecCCCCCCChhhhcCCCccEEEEecCCCCCcCCCCCCCCCCCeeEe
Q 007330 402 GLWFDKDEEGEEADHEEIIEALKPHSNLVALDILGFKGKITFPKWIMSLNNLKSLHLRSCEKCEILSPLGKLPSLETLYI 481 (607)
Q Consensus 402 ~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L 481 (607)
.+..|.. ...+..+..+.++..+.+.++.... ++..+..+++++.|++++|. ...++.++.+.+|+.|++
T Consensus 215 ~~~~N~~--------~~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~-i~~i~~~~~~~~l~~L~~ 284 (394)
T COG4886 215 DLSNNSI--------IELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQ-ISSISSLGSLTNLRELDL 284 (394)
T ss_pred hhcCCcc--------eecchhhhhcccccccccCCceeee-ccchhccccccceecccccc-ccccccccccCccCEEec
Confidence 5554421 1334445566677777777776665 57777788888888888884 334444788888888888
Q ss_pred cCCcCe
Q 007330 482 AGMSGK 487 (607)
Q Consensus 482 ~~~~~~ 487 (607)
+++.+.
T Consensus 285 s~n~~~ 290 (394)
T COG4886 285 SGNSLS 290 (394)
T ss_pred cCcccc
Confidence 887743
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.74 E-value=1.9e-09 Score=99.06 Aligned_cols=37 Identities=16% Similarity=0.118 Sum_probs=22.6
Q ss_pred cccCcccccccccccccCcCCCCCCCCCCccCcEEecCCc
Q 007330 313 KLVNLRHLIYYYSNLDYMPKGFERLTCLRTLTEFVVSGGK 352 (607)
Q Consensus 313 ~l~~L~~L~~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~ 352 (607)
..+.|+.||++.|.++.+.+++.-++.++.|. ++.|.
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~---lS~N~ 318 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLI---LSQNR 318 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEe---ccccc
Confidence 45567777777777777766555555555444 44443
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.60 E-value=7e-09 Score=95.41 Aligned_cols=130 Identities=23% Similarity=0.295 Sum_probs=94.1
Q ss_pred ccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccccccccccCcccccEEecCCCCcccCchhhh
Q 007330 209 IFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIPKEKEKLVHLRYLKLSLLMREELPDIVC 288 (607)
Q Consensus 209 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~ 288 (607)
...+..|..+++++|. +.. +.+.+.-.+.+|+|+++ +|.+..+- .+..|.+|+.|||++|.+.++-..-.
T Consensus 280 ~dTWq~LtelDLS~N~--I~~-iDESvKL~Pkir~L~lS------~N~i~~v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh~ 349 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNL--ITQ-IDESVKLAPKLRRLILS------QNRIRTVQ-NLAELPQLQLLDLSGNLLAECVGWHL 349 (490)
T ss_pred cchHhhhhhccccccc--hhh-hhhhhhhccceeEEecc------ccceeeeh-hhhhcccceEeecccchhHhhhhhHh
Confidence 3445667888888875 333 44446777888888888 77877763 47778888888888888777766666
Q ss_pred cCCcccEeecCCCCCccccccccccccCcccccccccccccCc--CCCCCCCCCCccCcEEecCCcc
Q 007330 289 ELFNLQTLEVEHCPRLKRLPQGIGKLVNLRHLIYYYSNLDYMP--KGFERLTCLRTLTEFVVSGGKY 353 (607)
Q Consensus 289 ~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~l~~lp--~~i~~l~~L~~L~~~~~~~~~~ 353 (607)
+|-|.++|.|++|. +..+ .+++++.+|..||++.|++..+. .+|++++.|+++. +.+|.+
T Consensus 350 KLGNIKtL~La~N~-iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~---L~~NPl 411 (490)
T KOG1259|consen 350 KLGNIKTLKLAQNK-IETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLR---LTGNPL 411 (490)
T ss_pred hhcCEeeeehhhhh-Hhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHh---hcCCCc
Confidence 77888888888876 7777 37888888888888888887654 4577777777666 555543
No 36
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.57 E-value=3.2e-09 Score=102.22 Aligned_cols=305 Identities=15% Similarity=0.119 Sum_probs=172.9
Q ss_pred CCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccccccccccCcccccEEecCCCC-cccCch--hhhc
Q 007330 213 KKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIPKEKEKLVHLRYLKLSLLM-REELPD--IVCE 289 (607)
Q Consensus 213 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~-i~~lp~--~i~~ 289 (607)
..||.|.+.|+...-...+..+...++++..|.+.+|..+++..+..+. ..+..|++|++..|. ++...- -...
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla---~~C~~l~~l~L~~c~~iT~~~Lk~la~g 214 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLA---RYCRKLRHLNLHSCSSITDVSLKYLAEG 214 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHH---HhcchhhhhhhcccchhHHHHHHHHHHh
Confidence 4577777777765555556666677788888887776655444433332 256778888887755 443321 1346
Q ss_pred CCcccEeecCCCCCccc--cccccccccCcccccc-cccccccCcCCCCCCCCCCccCcEEecCCccCCCcccccccccc
Q 007330 290 LFNLQTLEVEHCPRLKR--LPQGIGKLVNLRHLIY-YYSNLDYMPKGFERLTCLRTLTEFVVSGGKYSGKACNIEGLRHL 366 (607)
Q Consensus 290 L~~L~~L~L~~~~~l~~--lp~~i~~l~~L~~L~~-~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L 366 (607)
+++|++|+++.|..+.. +..-.....+++.+.. +|.. .+ ++.|.. .-.....+
T Consensus 215 C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e---~~--------le~l~~-------------~~~~~~~i 270 (483)
T KOG4341|consen 215 CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLE---LE--------LEALLK-------------AAAYCLEI 270 (483)
T ss_pred hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccccc---cc--------HHHHHH-------------HhccChHh
Confidence 78888888888875554 1111223333333331 1211 10 011100 00000000
Q ss_pred cccCceEEEeccCCCCCHhHHHHHHhcCCCCCcceEEEecCCCCCchhcHHHHhhcC-CCCCCcceEEEeecCCCCCCC-
Q 007330 367 NHLGGVFRITGLGNVTDVDEAENAELEKKRNVVDLGLWFDKDEEGEEADHEEIIEAL-KPHSNLVALDILGFKGKITFP- 444 (607)
Q Consensus 367 ~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~lp- 444 (607)
. ++....|..+++.... ..-..+..|+.|..+.+... .+.....+ ....+|+.|.+.+|...+..-
T Consensus 271 ~----~lnl~~c~~lTD~~~~--~i~~~c~~lq~l~~s~~t~~------~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~f 338 (483)
T KOG4341|consen 271 L----KLNLQHCNQLTDEDLW--LIACGCHALQVLCYSSCTDI------TDEVLWALGQHCHNLQVLELSGCQQFSDRGF 338 (483)
T ss_pred h----ccchhhhccccchHHH--HHhhhhhHhhhhcccCCCCC------chHHHHHHhcCCCceEEEeccccchhhhhhh
Confidence 0 1112223333332211 11234556777777666532 22233333 456899999999987543111
Q ss_pred hhhh-cCCCccEEEEecCCCCCc--CCC-CCCCCCCCeeEecCCc-CeeeCccccCCCCCCccCCCccceeeeccccccc
Q 007330 445 KWIM-SLNNLKSLHLRSCEKCEI--LSP-LGKLPSLETLYIAGMS-GKRVGDEFFGIGSDCNIAFPKLKFLRVVDMFEWE 519 (607)
Q Consensus 445 ~~l~-~l~~L~~L~L~~~~~~~~--~~~-l~~l~~L~~L~L~~~~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 519 (607)
..++ +++.|+.+++.+|....+ +-. -.++|.|+.|.++.|. +++.+...+.... -+...|..+.+++++.+.
T Consensus 339 t~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~---c~~~~l~~lEL~n~p~i~ 415 (483)
T KOG4341|consen 339 TMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSS---CSLEGLEVLELDNCPLIT 415 (483)
T ss_pred hhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcc---ccccccceeeecCCCCch
Confidence 1122 889999999999964332 222 3478999999999998 6655444443322 267789999999998876
Q ss_pred cccccccccCcccccccCCccceeeeecccCccccC--CCCCCCCCcCeE
Q 007330 520 EWGFGITRSNVKEDVMVMPCLNYLDIQFCFKLKALP--GYLLEITALEKL 567 (607)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp--~~~~~l~~L~~L 567 (607)
+-... ....+++|+.+++.+|..+..-+ ....++|++++.
T Consensus 416 d~~Le--------~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 416 DATLE--------HLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVH 457 (483)
T ss_pred HHHHH--------HHhhCcccceeeeechhhhhhhhhHHHHhhCccceeh
Confidence 54421 15688999999999999887644 233445555543
No 37
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=3.5e-08 Score=95.73 Aligned_cols=150 Identities=19% Similarity=0.111 Sum_probs=103.9
Q ss_pred cCceeEEEEEeCCCCCcc--ccccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccccccc--cc
Q 007330 189 LEKFRHSMLVLGRRASFP--VSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIPK--EK 264 (607)
Q Consensus 189 ~~~~r~l~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp~--~~ 264 (607)
.+++|.+++.++...... .....|++++.|+++.|-......+..+...+++|+.|+++ .|.+....+ .-
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls------~Nrl~~~~~s~~~ 193 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLS------SNRLSNFISSNTT 193 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccc------cccccCCccccch
Confidence 567888888887776533 25678999999999998633334456667899999999999 444432211 11
Q ss_pred cCcccccEEecCCCCcc--cCchhhhcCCcccEeecCCCCCccccccccccccCcccccccccccccCc--CCCCCCCCC
Q 007330 265 EKLVHLRYLKLSLLMRE--ELPDIVCELFNLQTLEVEHCPRLKRLPQGIGKLVNLRHLIYYYSNLDYMP--KGFERLTCL 340 (607)
Q Consensus 265 ~~l~~L~~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~l~~lp--~~i~~l~~L 340 (607)
..+.+|+.|.|++|.+. ++-.-+..+++|+.|+|..|..+..--....-+..|+.||++.|++...+ ..++.++.|
T Consensus 194 ~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L 273 (505)
T KOG3207|consen 194 LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGL 273 (505)
T ss_pred hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccch
Confidence 26788999999999865 22233557899999999998534332233456778999999988887776 345666666
Q ss_pred CccC
Q 007330 341 RTLT 344 (607)
Q Consensus 341 ~~L~ 344 (607)
..|.
T Consensus 274 ~~Ln 277 (505)
T KOG3207|consen 274 NQLN 277 (505)
T ss_pred hhhh
Confidence 6655
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.42 E-value=3e-07 Score=66.44 Aligned_cols=58 Identities=26% Similarity=0.342 Sum_probs=41.9
Q ss_pred CceeEEEecCccccccccccccc-ccccCcccccEEecCCCCcccCch-hhhcCCcccEeecCCCC
Q 007330 239 TCLRALKITGKVSWGQNSIYAIP-KEKEKLVHLRYLKLSLLMREELPD-IVCELFNLQTLEVEHCP 302 (607)
Q Consensus 239 ~~L~~L~L~~~~~~~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~ 302 (607)
++|++|+++ ++.++.+| ..|..+++|++|++++|.+..+|+ .+.++++|++|++++|.
T Consensus 1 p~L~~L~l~------~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLS------NNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEET------SSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECC------CCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 457777777 67777775 456777777777777777777765 46777777777777765
No 39
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.36 E-value=3.4e-07 Score=86.58 Aligned_cols=125 Identities=21% Similarity=0.213 Sum_probs=78.6
Q ss_pred HHHHHHhcCCCCCcceEEEecCCCCCchhcHHHHhhcCCCCCCcceEEEeecCCCCC----CChhhhcCCCccEEEEecC
Q 007330 386 EAENAELEKKRNVVDLGLWFDKDEEGEEADHEEIIEALKPHSNLVALDILGFKGKIT----FPKWIMSLNNLKSLHLRSC 461 (607)
Q Consensus 386 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~----lp~~l~~l~~L~~L~L~~~ 461 (607)
......+...+.|+.+.+..|++... -..-+...+..+++|+.|++.+|.+... +-..+..+++|+.|++++|
T Consensus 175 ~~~A~~~~~~~~leevr~~qN~I~~e---G~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 175 TALAEAFQSHPTLEEVRLSQNGIRPE---GVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC 251 (382)
T ss_pred HHHHHHHHhccccceEEEecccccCc---hhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence 34445566778888888888875421 1234456777888899999988887652 2223346788899999888
Q ss_pred CCCC-----cCCC-CCCCCCCCeeEecCCcCeeeCccccCCCCCCccCCCccceeeecccc
Q 007330 462 EKCE-----ILSP-LGKLPSLETLYIAGMSGKRVGDEFFGIGSDCNIAFPKLKFLRVVDMF 516 (607)
Q Consensus 462 ~~~~-----~~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 516 (607)
..-. .... -...|+|+.|.+.+|.++.-....... +...-|.|+.|.|++|.
T Consensus 252 ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~---~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 252 LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAA---CMAEKPDLEKLNLNGNR 309 (382)
T ss_pred ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHH---HHhcchhhHHhcCCccc
Confidence 5221 0111 234788999999888755433222111 11247888999988874
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.30 E-value=8.3e-08 Score=99.25 Aligned_cols=127 Identities=22% Similarity=0.295 Sum_probs=84.9
Q ss_pred CCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccccccccccCcccccEEecCCCCcccCchhhhcC
Q 007330 211 KAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIPKEKEKLVHLRYLKLSLLMREELPDIVCEL 290 (607)
Q Consensus 211 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L 290 (607)
.+..++.+.+..+. +.. ....+..+++|..|++. ++.++.+...+..+++|++|++++|.|+++. .+..+
T Consensus 70 ~l~~l~~l~l~~n~--i~~-~~~~l~~~~~l~~l~l~------~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l 139 (414)
T KOG0531|consen 70 SLTSLKELNLRQNL--IAK-ILNHLSKLKSLEALDLY------DNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTL 139 (414)
T ss_pred HhHhHHhhccchhh--hhh-hhcccccccceeeeecc------ccchhhcccchhhhhcchheecccccccccc-chhhc
Confidence 44555555555553 222 12226677888888888 7788777554777888888888888888874 37777
Q ss_pred CcccEeecCCCCCccccccccccccCcccccccccccccCcCC-CCCCCCCCccCcEEecCCc
Q 007330 291 FNLQTLEVEHCPRLKRLPQGIGKLVNLRHLIYYYSNLDYMPKG-FERLTCLRTLTEFVVSGGK 352 (607)
Q Consensus 291 ~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~l~~lp~~-i~~l~~L~~L~~~~~~~~~ 352 (607)
..|+.|++.+|. +..++ .+..+++|+.++++.|.+..+... ...+.+++.+. ++.+.
T Consensus 140 ~~L~~L~l~~N~-i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~---l~~n~ 197 (414)
T KOG0531|consen 140 TLLKELNLSGNL-ISDIS-GLESLKSLKLLDLSYNRIVDIENDELSELISLEELD---LGGNS 197 (414)
T ss_pred cchhhheeccCc-chhcc-CCccchhhhcccCCcchhhhhhhhhhhhccchHHHh---ccCCc
Confidence 778888888877 77664 566688888888888877766543 34444444444 44444
No 41
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=2.9e-08 Score=91.41 Aligned_cols=90 Identities=14% Similarity=0.160 Sum_probs=49.5
Q ss_pred HhcCCCCCcceEEEecCCCCCchhcHHHHhhcCCCCCCcceEEEeecCCCC---CCChhhhcCCCccEEEEecCCCCC--
Q 007330 391 ELEKKRNVVDLGLWFDKDEEGEEADHEEIIEALKPHSNLVALDILGFKGKI---TFPKWIMSLNNLKSLHLRSCEKCE-- 465 (607)
Q Consensus 391 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~---~lp~~l~~l~~L~~L~L~~~~~~~-- 465 (607)
.+.+++.|.+|+++||...... .......++ ++|..|+++|+.-.- .+..-...+++|..|+|++|..++
T Consensus 255 l~~scs~L~~LNlsWc~l~~~~---Vtv~V~his--e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~ 329 (419)
T KOG2120|consen 255 LLSSCSRLDELNLSWCFLFTEK---VTVAVAHIS--ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKND 329 (419)
T ss_pred HHHhhhhHhhcCchHhhccchh---hhHHHhhhc--hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCch
Confidence 3456667777777777653210 111122222 467777777765321 011111267777777777775443
Q ss_pred cCCCCCCCCCCCeeEecCCc
Q 007330 466 ILSPLGKLPSLETLYIAGMS 485 (607)
Q Consensus 466 ~~~~l~~l~~L~~L~L~~~~ 485 (607)
....+-.++.|++|.++.|+
T Consensus 330 ~~~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 330 CFQEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred HHHHHHhcchheeeehhhhc
Confidence 22335567777777777776
No 42
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.28 E-value=2.6e-07 Score=87.34 Aligned_cols=257 Identities=17% Similarity=0.140 Sum_probs=138.5
Q ss_pred ccccCCCCeeEEEeeccch--hhhhhhhhhhccCCceeEEEecCcccccccccccccc-------cccCcccccEEecCC
Q 007330 207 VSIFKAKKLRSLLIHSEFE--VSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIPK-------EKEKLVHLRYLKLSL 277 (607)
Q Consensus 207 ~~~~~~~~L~~L~l~~~~~--~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp~-------~~~~l~~L~~L~L~~ 277 (607)
+....+..+..+++++|.. ....++...+.+.+.||+-++++- +.+....++|+ .+-..++|++|+||.
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~--ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM--FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh--hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 4445667778888888762 123345555677778888888731 11222233443 233445777777777
Q ss_pred CCcc-----cCchhhhcCCcccEeecCCCCCccccccc-cccccCcccccccccccccCcCCCCCCCCCCccCcEEecCC
Q 007330 278 LMRE-----ELPDIVCELFNLQTLEVEHCPRLKRLPQG-IGKLVNLRHLIYYYSNLDYMPKGFERLTCLRTLTEFVVSGG 351 (607)
Q Consensus 278 ~~i~-----~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~ 351 (607)
|-+. .+-+-+.++..|++|.|.+|. +...-.. ++ ..|.+|. .+ ..++.-+ .|+++.++.|
T Consensus 102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~--~al~~l~--~~------kk~~~~~---~Lrv~i~~rN 167 (382)
T KOG1909|consen 102 NAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLG--RALFELA--VN------KKAASKP---KLRVFICGRN 167 (382)
T ss_pred cccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHH--HHHHHHH--HH------hccCCCc---ceEEEEeecc
Confidence 6532 122235567777777777765 3321000 00 0111111 00 0011111 2333334444
Q ss_pred ccCCCcc-----cccccccccccCceEEEeccCCCCCHhHHHHHHhcCCCCCcceEEEecCCCCCchhcHHHHhhcCCCC
Q 007330 352 KYSGKAC-----NIEGLRHLNHLGGVFRITGLGNVTDVDEAENAELEKKRNVVDLGLWFDKDEEGEEADHEEIIEALKPH 426 (607)
Q Consensus 352 ~~~~~~~-----~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~ 426 (607)
.+...+. .+...+.|. .+.+..-..-..........+..+++|+.|++..|..... -...+-..+..+
T Consensus 168 rlen~ga~~~A~~~~~~~~le----evr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~e---gs~~LakaL~s~ 240 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLE----EVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLE---GSVALAKALSSW 240 (382)
T ss_pred ccccccHHHHHHHHHhccccc----eEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhH---HHHHHHHHhccc
Confidence 4321111 112222333 3333222211222245667788999999999998865321 122345667778
Q ss_pred CCcceEEEeecCCCCCCChhhh-----cCCCccEEEEecCCCCC-----cCCCCCCCCCCCeeEecCCcC
Q 007330 427 SNLVALDILGFKGKITFPKWIM-----SLNNLKSLHLRSCEKCE-----ILSPLGKLPSLETLYIAGMSG 486 (607)
Q Consensus 427 ~~L~~L~l~~~~~~~~lp~~l~-----~l~~L~~L~L~~~~~~~-----~~~~l~~l~~L~~L~L~~~~~ 486 (607)
++|+.|++++|.....-...+. ..|+|+.|.+.+|.... ........|.|+.|+|++|.+
T Consensus 241 ~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 241 PHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred chheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 8999999999987653222222 67899999999996432 112245589999999999985
No 43
>PLN03150 hypothetical protein; Provisional
Probab=98.27 E-value=1.1e-06 Score=95.10 Aligned_cols=91 Identities=22% Similarity=0.344 Sum_probs=73.1
Q ss_pred ceeEEEecCcccccccccc-cccccccCcccccEEecCCCCcc-cCchhhhcCCcccEeecCCCCCccccccccccccCc
Q 007330 240 CLRALKITGKVSWGQNSIY-AIPKEKEKLVHLRYLKLSLLMRE-ELPDIVCELFNLQTLEVEHCPRLKRLPQGIGKLVNL 317 (607)
Q Consensus 240 ~L~~L~L~~~~~~~~~~l~-~lp~~~~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L 317 (607)
.++.|+|+ ++.+. .+|..++.+++|+.|+|++|.+. .+|..++.+++|++|+|++|.....+|..+++|++|
T Consensus 419 ~v~~L~L~------~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L 492 (623)
T PLN03150 419 FIDGLGLD------NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSL 492 (623)
T ss_pred EEEEEECC------CCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCC
Confidence 47788888 66664 56888888899999999988864 788888889999999999888555788888889999
Q ss_pred ccccccccccc-cCcCCCCC
Q 007330 318 RHLIYYYSNLD-YMPKGFER 336 (607)
Q Consensus 318 ~~L~~~~~~l~-~lp~~i~~ 336 (607)
++|++++|.+. .+|..++.
T Consensus 493 ~~L~Ls~N~l~g~iP~~l~~ 512 (623)
T PLN03150 493 RILNLNGNSLSGRVPAALGG 512 (623)
T ss_pred CEEECcCCcccccCChHHhh
Confidence 99998888775 67776654
No 44
>PLN03150 hypothetical protein; Provisional
Probab=98.24 E-value=2.2e-06 Score=92.88 Aligned_cols=83 Identities=23% Similarity=0.377 Sum_probs=54.9
Q ss_pred cccEEecCCCCc-ccCchhhhcCCcccEeecCCCCCccccccccccccCcccccccccccc-cCcCCCCCCCCCCccCcE
Q 007330 269 HLRYLKLSLLMR-EELPDIVCELFNLQTLEVEHCPRLKRLPQGIGKLVNLRHLIYYYSNLD-YMPKGFERLTCLRTLTEF 346 (607)
Q Consensus 269 ~L~~L~L~~~~i-~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~l~-~lp~~i~~l~~L~~L~~~ 346 (607)
.++.|+|+++.+ ..+|..++++++|++|+|++|.....+|..++.+++|+.|+++.|.+. .+|..++.+++|+.|.
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~-- 496 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN-- 496 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEE--
Confidence 366677777764 356667777777777777777644467777777777777777777665 5666666666666655
Q ss_pred EecCCccC
Q 007330 347 VVSGGKYS 354 (607)
Q Consensus 347 ~~~~~~~~ 354 (607)
++++.+.
T Consensus 497 -Ls~N~l~ 503 (623)
T PLN03150 497 -LNGNSLS 503 (623)
T ss_pred -CcCCccc
Confidence 5555543
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.24 E-value=1.1e-07 Score=98.47 Aligned_cols=127 Identities=18% Similarity=0.193 Sum_probs=77.3
Q ss_pred eeEEEEEeCCCCCccccccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccccccccccCccccc
Q 007330 192 FRHSMLVLGRRASFPVSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIPKEKEKLVHLR 271 (607)
Q Consensus 192 ~r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp~~~~~l~~L~ 271 (607)
+..+.+..+.+......+..+.++..|++.+|. +.. +...+..+++|++|+++ +|.|+.+ ..+..+..|+
T Consensus 74 l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~--i~~-i~~~l~~~~~L~~L~ls------~N~I~~i-~~l~~l~~L~ 143 (414)
T KOG0531|consen 74 LKELNLRQNLIAKILNHLSKLKSLEALDLYDNK--IEK-IENLLSSLVNLQVLDLS------FNKITKL-EGLSTLTLLK 143 (414)
T ss_pred HHhhccchhhhhhhhcccccccceeeeeccccc--hhh-cccchhhhhcchheecc------ccccccc-cchhhccchh
Confidence 333444444444323335566777777777765 222 22224567777777777 6777666 3466666677
Q ss_pred EEecCCCCcccCchhhhcCCcccEeecCCCCCccccccc-cccccCcccccccccccccC
Q 007330 272 YLKLSLLMREELPDIVCELFNLQTLEVEHCPRLKRLPQG-IGKLVNLRHLIYYYSNLDYM 330 (607)
Q Consensus 272 ~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~~~~~~l~~l 330 (607)
.|++++|.+..++. +..+++|+.+++++|. +..+... ...+.+|+.+++..|.+..+
T Consensus 144 ~L~l~~N~i~~~~~-~~~l~~L~~l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n~i~~i 201 (414)
T KOG0531|consen 144 ELNLSGNLISDISG-LESLKSLKLLDLSYNR-IVDIENDELSELISLEELDLGGNSIREI 201 (414)
T ss_pred hheeccCcchhccC-CccchhhhcccCCcch-hhhhhhhhhhhccchHHHhccCCchhcc
Confidence 77777777776643 5557777777777776 5555432 46677777777666665443
No 46
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.23 E-value=1.1e-06 Score=58.00 Aligned_cols=40 Identities=30% Similarity=0.401 Sum_probs=26.9
Q ss_pred ccccEEecCCCCcccCchhhhcCCcccEeecCCCCCccccc
Q 007330 268 VHLRYLKLSLLMREELPDIVCELFNLQTLEVEHCPRLKRLP 308 (607)
Q Consensus 268 ~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp 308 (607)
++|++|++++|.++++|+.+++|++|++|++++|. ++++|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 35777777777777777767777777777777775 65554
No 47
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.21 E-value=1.2e-06 Score=63.17 Aligned_cols=60 Identities=28% Similarity=0.347 Sum_probs=52.0
Q ss_pred CCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCccccccccccccc-ccccCcccccEEecCCCCc
Q 007330 213 KKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIP-KEKEKLVHLRYLKLSLLMR 280 (607)
Q Consensus 213 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp-~~~~~l~~L~~L~L~~~~i 280 (607)
|+|++|++.+|. .....+..|..+++|++|+++ ++.++.+| ..|..+++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~--l~~i~~~~f~~l~~L~~L~l~------~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNK--LTEIPPDSFSNLPNLETLDLS------NNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSST--ESEECTTTTTTGTTESEEEET------SSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCC--CCccCHHHHcCCCCCCEeEcc------CCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 578999999986 556667789999999999999 89998885 6789999999999999864
No 48
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.00 E-value=3.7e-05 Score=76.64 Aligned_cols=65 Identities=23% Similarity=0.326 Sum_probs=47.1
Q ss_pred hccCCceeEEEecCcccccccccccccccccCcccccEEecCCCC-cccCchhhhcCCcccEeecCCCCCccccccc
Q 007330 235 FDYLTCLRALKITGKVSWGQNSIYAIPKEKEKLVHLRYLKLSLLM-REELPDIVCELFNLQTLEVEHCPRLKRLPQG 310 (607)
Q Consensus 235 ~~~l~~L~~L~L~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~-i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~ 310 (607)
+..+++++.|+++ ++.++.+|. + ..+|+.|.+++|. ++.+|..+ ..+|++|++++|..+..+|.+
T Consensus 48 ~~~~~~l~~L~Is------~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s 113 (426)
T PRK15386 48 IEEARASGRLYIK------DCDIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES 113 (426)
T ss_pred HHHhcCCCEEEeC------CCCCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc
Confidence 5556888888888 667777772 2 3468888888766 77777655 357888888888667777754
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.99 E-value=6.5e-06 Score=54.31 Aligned_cols=41 Identities=27% Similarity=0.341 Sum_probs=35.2
Q ss_pred CceeEEEecCcccccccccccccccccCcccccEEecCCCCcccCch
Q 007330 239 TCLRALKITGKVSWGQNSIYAIPKEKEKLVHLRYLKLSLLMREELPD 285 (607)
Q Consensus 239 ~~L~~L~L~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~ 285 (607)
++|++|+++ ++.++.+|..+++|++|++|++++|.++++|+
T Consensus 1 ~~L~~L~l~------~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLS------NNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEET------SSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEcc------CCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 478999999 89999998889999999999999999988764
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.94 E-value=3.2e-06 Score=69.12 Aligned_cols=92 Identities=17% Similarity=0.188 Sum_probs=69.5
Q ss_pred hccCCceeEEEecCcccccccccccccccccC-cccccEEecCCCCcccCchhhhcCCcccEeecCCCCCcccccccccc
Q 007330 235 FDYLTCLRALKITGKVSWGQNSIYAIPKEKEK-LVHLRYLKLSLLMREELPDIVCELFNLQTLEVEHCPRLKRLPQGIGK 313 (607)
Q Consensus 235 ~~~l~~L~~L~L~~~~~~~~~~l~~lp~~~~~-l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~ 313 (607)
+.....|...+|+ +|.++++|..|.. ++.++.|++++|.+.++|.++..++.|+.|+++.|. +...|..|..
T Consensus 49 l~~~~el~~i~ls------~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~ 121 (177)
T KOG4579|consen 49 LSKGYELTKISLS------DNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAP 121 (177)
T ss_pred HhCCceEEEEecc------cchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCc-cccchHHHHH
Confidence 4556677777888 7778777766653 347888888888888888888888888888888877 6677777777
Q ss_pred ccCcccccccccccccCcCC
Q 007330 314 LVNLRHLIYYYSNLDYMPKG 333 (607)
Q Consensus 314 l~~L~~L~~~~~~l~~lp~~ 333 (607)
|.+|..|+...+....+|..
T Consensus 122 L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 122 LIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred HHhHHHhcCCCCccccCcHH
Confidence 88888888777777776654
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.86 E-value=6.5e-06 Score=89.02 Aligned_cols=131 Identities=19% Similarity=0.131 Sum_probs=88.3
Q ss_pred cCceeEEEEEeCCCC--Cccc-cccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCccccccccccccccccc
Q 007330 189 LEKFRHSMLVLGRRA--SFPV-SIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIPKEKE 265 (607)
Q Consensus 189 ~~~~r~l~l~~~~~~--~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp~~~~ 265 (607)
..+++++.+.+...- .++. ....+|.|++|.+.+......+ +...+.++++|+.||++ ++.++.+ .+++
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d-F~~lc~sFpNL~sLDIS------~TnI~nl-~GIS 192 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD-FSQLCASFPNLRSLDIS------GTNISNL-SGIS 192 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh-HHHHhhccCccceeecC------CCCccCc-HHHh
Confidence 567888888775432 1122 2345788999988886532222 55567888999999998 7888777 6788
Q ss_pred CcccccEEecCCCCcccCc--hhhhcCCcccEeecCCCCCcccc--c----cccccccCccccccccccc
Q 007330 266 KLVHLRYLKLSLLMREELP--DIVCELFNLQTLEVEHCPRLKRL--P----QGIGKLVNLRHLIYYYSNL 327 (607)
Q Consensus 266 ~l~~L~~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~~l~~l--p----~~i~~l~~L~~L~~~~~~l 327 (607)
.|++|+.|.+++-.+..-. ..+.+|++|++||+|.......- . +.-..|++|+.||.+++.+
T Consensus 193 ~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 193 RLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred ccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 8999999988887765533 24678899999999876533321 1 1112377788888666555
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.84 E-value=6.8e-07 Score=92.16 Aligned_cols=93 Identities=23% Similarity=0.177 Sum_probs=60.1
Q ss_pred ccccccccccccCcccccEEecCCCCcccCchhhhcCCcccEeecCCCCCccccccccccccCcccccccccccccCcCC
Q 007330 254 QNSIYAIPKEKEKLVHLRYLKLSLLMREELPDIVCELFNLQTLEVEHCPRLKRLPQGIGKLVNLRHLIYYYSNLDYMPKG 333 (607)
Q Consensus 254 ~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~l~~lp~~ 333 (607)
+|.+..+-.++.-++.|+.|+|++|++...- .+..|++|++|||+.|. +..+|.--..-.+|+.|.+++|.++.+ .+
T Consensus 173 yN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~L~~L~lrnN~l~tL-~g 249 (1096)
T KOG1859|consen 173 YNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCKLQLLNLRNNALTTL-RG 249 (1096)
T ss_pred hhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhhhheeeeecccHHHhh-hh
Confidence 6666666566666777777777777776664 57777777777777776 666663221122377777777777666 45
Q ss_pred CCCCCCCCccCcEEecCCc
Q 007330 334 FERLTCLRTLTEFVVSGGK 352 (607)
Q Consensus 334 i~~l~~L~~L~~~~~~~~~ 352 (607)
|.+|++|+.|+ ++.|-
T Consensus 250 ie~LksL~~LD---lsyNl 265 (1096)
T KOG1859|consen 250 IENLKSLYGLD---LSYNL 265 (1096)
T ss_pred HHhhhhhhccc---hhHhh
Confidence 66666666665 55443
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.81 E-value=8.7e-05 Score=74.03 Aligned_cols=77 Identities=22% Similarity=0.221 Sum_probs=45.3
Q ss_pred HhcCCCCCcceEEEecCCCCCchhcHHHHhhcCCCCCCcceEEEeecCCCCCCChhhhcCCCccEEEEecCCCCCcCCCC
Q 007330 391 ELEKKRNVVDLGLWFDKDEEGEEADHEEIIEALKPHSNLVALDILGFKGKITFPKWIMSLNNLKSLHLRSCEKCEILSPL 470 (607)
Q Consensus 391 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l 470 (607)
.+..+.+++.|+++.|.. ..+| .-+++|+.|.+++|.....+|..+ .++|++|.+++|..+..+|
T Consensus 47 r~~~~~~l~~L~Is~c~L--------~sLP---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP-- 111 (426)
T PRK15386 47 QIEEARASGRLYIKDCDI--------ESLP---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP-- 111 (426)
T ss_pred HHHHhcCCCEEEeCCCCC--------cccC---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc--
Confidence 345567777777776643 1222 134567777777766655566544 2577777777775443332
Q ss_pred CCCCCCCeeEecCCc
Q 007330 471 GKLPSLETLYIAGMS 485 (607)
Q Consensus 471 ~~l~~L~~L~L~~~~ 485 (607)
++|+.|++..+.
T Consensus 112 ---~sLe~L~L~~n~ 123 (426)
T PRK15386 112 ---ESVRSLEIKGSA 123 (426)
T ss_pred ---cccceEEeCCCC
Confidence 356666665443
No 54
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=1.4e-06 Score=80.64 Aligned_cols=19 Identities=26% Similarity=0.287 Sum_probs=9.2
Q ss_pred HHHhcCCCCCcceEEEecC
Q 007330 389 NAELEKKRNVVDLGLWFDK 407 (607)
Q Consensus 389 ~~~l~~~~~L~~L~l~~~~ 407 (607)
...+.+-.+|+.|+++.++
T Consensus 227 ~~~iAkN~~L~~lnlsm~s 245 (419)
T KOG2120|consen 227 VNTIAKNSNLVRLNLSMCS 245 (419)
T ss_pred HHHHhccccceeecccccc
Confidence 3444444555555555443
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.57 E-value=5.1e-05 Score=82.23 Aligned_cols=136 Identities=22% Similarity=0.112 Sum_probs=91.7
Q ss_pred CCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccccccccccCcccccEEecCCCCcccCchhhhcCC
Q 007330 212 AKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIPKEKEKLVHLRYLKLSLLMREELPDIVCELF 291 (607)
Q Consensus 212 ~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~ 291 (607)
-.+|+.|+++|.......|+...-..+|+|+.|.++|..... .++-.-..++++|+.||+|+++++.+ ..+++|+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~----~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~Lk 195 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDN----DDFSQLCASFPNLRSLDISGTNISNL-SGISRLK 195 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecc----hhHHHHhhccCccceeecCCCCccCc-HHHhccc
Confidence 467899999888766777777777889999999998432211 11223345788999999999999888 6799999
Q ss_pred cccEeecCCCCCcccc--ccccccccCcccccccccccccCcCC----CCCCCCCCccCcEEecCCcc
Q 007330 292 NLQTLEVEHCPRLKRL--PQGIGKLVNLRHLIYYYSNLDYMPKG----FERLTCLRTLTEFVVSGGKY 353 (607)
Q Consensus 292 ~L~~L~L~~~~~l~~l--p~~i~~l~~L~~L~~~~~~l~~lp~~----i~~l~~L~~L~~~~~~~~~~ 353 (607)
+|++|.+++-. +..- -..+.+|++|++||++......-+.- +..-..|..|..++++++.+
T Consensus 196 nLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 196 NLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred cHHHHhccCCC-CCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 99999988754 3321 13577899999999776544332211 11122234444445877664
No 56
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.55 E-value=0.00014 Score=67.64 Aligned_cols=86 Identities=26% Similarity=0.215 Sum_probs=56.3
Q ss_pred hhhccCCceeEEEecCcccccccccc---cccccccCcccccEEecCCCCc----ccCchhhhcCCcccEeecCCCCCcc
Q 007330 233 GLFDYLTCLRALKITGKVSWGQNSIY---AIPKEKEKLVHLRYLKLSLLMR----EELPDIVCELFNLQTLEVEHCPRLK 305 (607)
Q Consensus 233 ~~~~~l~~L~~L~L~~~~~~~~~~l~---~lp~~~~~l~~L~~L~L~~~~i----~~lp~~i~~L~~L~~L~L~~~~~l~ 305 (607)
.+-..++.++.|||. +|.+. ++-.-+.++++|++|+++.|.+ .++| ..+.+|++|-|.++. +.
T Consensus 65 ~~~~~~~~v~elDL~------~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~-L~ 134 (418)
T KOG2982|consen 65 LFGSSVTDVKELDLT------GNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTG-LS 134 (418)
T ss_pred HHHHHhhhhhhhhcc------cchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCCC-CC
Confidence 334567788888888 44442 2333455788888888888864 4444 346788888888875 32
Q ss_pred --ccccccccccCcccccccccccc
Q 007330 306 --RLPQGIGKLVNLRHLIYYYSNLD 328 (607)
Q Consensus 306 --~lp~~i~~l~~L~~L~~~~~~l~ 328 (607)
.....+..++.++.|+++.|++.
T Consensus 135 w~~~~s~l~~lP~vtelHmS~N~~r 159 (418)
T KOG2982|consen 135 WTQSTSSLDDLPKVTELHMSDNSLR 159 (418)
T ss_pred hhhhhhhhhcchhhhhhhhccchhh
Confidence 34445567777888877766554
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.43 E-value=5.5e-05 Score=70.32 Aligned_cols=67 Identities=18% Similarity=0.095 Sum_probs=31.8
Q ss_pred cCCCccEEEEecCCCC--CcCCCCCCCCCCCeeEecCCcCeeeCccccCCCCCCccCCCccceeeeccccccccc
Q 007330 449 SLNNLKSLHLRSCEKC--EILSPLGKLPSLETLYIAGMSGKRVGDEFFGIGSDCNIAFPKLKFLRVVDMFEWEEW 521 (607)
Q Consensus 449 ~l~~L~~L~L~~~~~~--~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 521 (607)
.+|++..+.+..|+.- ..-.....+|.+-.|+|+.+++.+... +.. ..+||+|..|.+.+.|-+..+
T Consensus 197 ~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswas--vD~----Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWAS--VDA----LNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred hcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHH--HHH----HcCCchhheeeccCCcccccc
Confidence 4556666666666421 122223445555556666554322211 000 125666666666666554433
No 58
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.37 E-value=7e-06 Score=84.98 Aligned_cols=131 Identities=18% Similarity=0.115 Sum_probs=80.9
Q ss_pred cCceeEEEEEeCCCCCccccccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccccccccccCcc
Q 007330 189 LEKFRHSMLVLGRRASFPVSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIPKEKEKLV 268 (607)
Q Consensus 189 ~~~~r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp~~~~~l~ 268 (607)
|..+...++..+....+..++.-++.+++|+++.|+ ... .. .+..+++|+.|||+ +|.+..+|.--..=-
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk--~~~-v~-~Lr~l~~LkhLDls------yN~L~~vp~l~~~gc 232 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNK--FTK-VD-NLRRLPKLKHLDLS------YNCLRHVPQLSMVGC 232 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhh--hhh-hH-HHHhcccccccccc------cchhccccccchhhh
Confidence 445555555555555445555666777777777775 222 22 36677777888887 777777762111112
Q ss_pred cccEEecCCCCcccCchhhhcCCcccEeecCCCCCccccc--cccccccCcccccccccccccCc
Q 007330 269 HLRYLKLSLLMREELPDIVCELFNLQTLEVEHCPRLKRLP--QGIGKLVNLRHLIYYYSNLDYMP 331 (607)
Q Consensus 269 ~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp--~~i~~l~~L~~L~~~~~~l~~lp 331 (607)
+|..|.+++|.++++- .+.+|++|+.||++.|- +.+.. .-++.|..|+.|++.+|.+.--|
T Consensus 233 ~L~~L~lrnN~l~tL~-gie~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 233 KLQLLNLRNNALTTLR-GIENLKSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred hheeeeecccHHHhhh-hHHhhhhhhccchhHhh-hhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 3777788777777773 47777788888887765 33211 23566777777777777665433
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.36 E-value=4.4e-05 Score=62.63 Aligned_cols=95 Identities=16% Similarity=0.202 Sum_probs=80.7
Q ss_pred cccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccccccccccCcccccEEecCCCCcccCchhh
Q 007330 208 SIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIPKEKEKLVHLRYLKLSLLMREELPDIV 287 (607)
Q Consensus 208 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i 287 (607)
.+.+...|...++++|. ....++.+...++.+.+|+++ ++.+.++|..+..++.||.|+++.|.+...|..+
T Consensus 48 ~l~~~~el~~i~ls~N~--fk~fp~kft~kf~t~t~lNl~------~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi 119 (177)
T KOG4579|consen 48 MLSKGYELTKISLSDNG--FKKFPKKFTIKFPTATTLNLA------NNEISDVPEELAAMPALRSLNLRFNPLNAEPRVI 119 (177)
T ss_pred HHhCCceEEEEecccch--hhhCCHHHhhccchhhhhhcc------hhhhhhchHHHhhhHHhhhcccccCccccchHHH
Confidence 34455667778888886 555566766778899999999 9999999999999999999999999999999999
Q ss_pred hcCCcccEeecCCCCCcccccccc
Q 007330 288 CELFNLQTLEVEHCPRLKRLPQGI 311 (607)
Q Consensus 288 ~~L~~L~~L~L~~~~~l~~lp~~i 311 (607)
..|.+|-.||..++. +.++|-.+
T Consensus 120 ~~L~~l~~Lds~~na-~~eid~dl 142 (177)
T KOG4579|consen 120 APLIKLDMLDSPENA-RAEIDVDL 142 (177)
T ss_pred HHHHhHHHhcCCCCc-cccCcHHH
Confidence 999999999999987 77787663
No 60
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.16 E-value=4.3e-05 Score=70.32 Aligned_cols=100 Identities=20% Similarity=0.172 Sum_probs=76.4
Q ss_pred CCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccccccccccCcccccEEecCCCCcccCch--hhh
Q 007330 211 KAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIPKEKEKLVHLRYLKLSLLMREELPD--IVC 288 (607)
Q Consensus 211 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~--~i~ 288 (607)
++.+.+.|+..|+. ..+ -.....|+.|.||.|+ -|.|+.+ ..+..+++|+.|.|+.|.|.++-+ .+.
T Consensus 17 dl~~vkKLNcwg~~--L~D--Isic~kMp~lEVLsLS------vNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLk 85 (388)
T KOG2123|consen 17 DLENVKKLNCWGCG--LDD--ISICEKMPLLEVLSLS------VNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLK 85 (388)
T ss_pred HHHHhhhhcccCCC--ccH--HHHHHhcccceeEEee------ccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHh
Confidence 35567778888875 332 2336789999999999 8899888 457889999999999999888754 367
Q ss_pred cCCcccEeecCCCCCcccccc-----ccccccCccccc
Q 007330 289 ELFNLQTLEVEHCPRLKRLPQ-----GIGKLVNLRHLI 321 (607)
Q Consensus 289 ~L~~L~~L~L~~~~~l~~lp~-----~i~~l~~L~~L~ 321 (607)
++++|++|.|..|.....-+. .+..|++|+.||
T Consensus 86 nlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 86 NLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 899999999988876554432 246688888887
No 61
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.09 E-value=0.00054 Score=63.07 Aligned_cols=44 Identities=18% Similarity=0.218 Sum_probs=26.2
Q ss_pred hhcCCcccEeecCCCCCccccccc----cccccCcccccccccccccC
Q 007330 287 VCELFNLQTLEVEHCPRLKRLPQG----IGKLVNLRHLIYYYSNLDYM 330 (607)
Q Consensus 287 i~~L~~L~~L~L~~~~~l~~lp~~----i~~l~~L~~L~~~~~~l~~l 330 (607)
+-+|++|+..+|++|..-.+.|+. |++-+.|.||.+.+|++..+
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~ 135 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPI 135 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCcc
Confidence 456677777777776533344432 45566677777666665443
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.94 E-value=0.00086 Score=59.14 Aligned_cols=82 Identities=26% Similarity=0.246 Sum_probs=46.7
Q ss_pred hccCCceeEEEecCccccccccccccccccc-CcccccEEecCCCCcccCch--hhhcCCcccEeecCCCCCcccccc--
Q 007330 235 FDYLTCLRALKITGKVSWGQNSIYAIPKEKE-KLVHLRYLKLSLLMREELPD--IVCELFNLQTLEVEHCPRLKRLPQ-- 309 (607)
Q Consensus 235 ~~~l~~L~~L~L~~~~~~~~~~l~~lp~~~~-~l~~L~~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~~l~~lp~-- 309 (607)
|..++.|.+|.+. +|.|+.+...+. .+++|..|.|.+|++.++.+ .+..|++|++|.+-+|. +..-+.
T Consensus 60 lp~l~rL~tLll~------nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np-v~~k~~YR 132 (233)
T KOG1644|consen 60 LPHLPRLHTLLLN------NNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP-VEHKKNYR 132 (233)
T ss_pred CCCccccceEEec------CCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCc-hhcccCce
Confidence 5566666666666 666666644444 33556666666666554422 24556666666666665 443221
Q ss_pred --ccccccCccccccc
Q 007330 310 --GIGKLVNLRHLIYY 323 (607)
Q Consensus 310 --~i~~l~~L~~L~~~ 323 (607)
.+..+++|+.||..
T Consensus 133 ~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 133 LYVLYKLPSLRTLDFQ 148 (233)
T ss_pred eEEEEecCcceEeehh
Confidence 24566666666643
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.72 E-value=6.1e-05 Score=69.32 Aligned_cols=59 Identities=27% Similarity=0.162 Sum_probs=25.1
Q ss_pred CCCCcceEEEeecCCCCCCChhhhcCCCccEEEEecCCCC--CcCCCCCCCCCCCeeEecCCc
Q 007330 425 PHSNLVALDILGFKGKITFPKWIMSLNNLKSLHLRSCEKC--EILSPLGKLPSLETLYIAGMS 485 (607)
Q Consensus 425 ~~~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~--~~~~~l~~l~~L~~L~L~~~~ 485 (607)
.++.|+.|.|+-|.+.. -..+..|++|++|+|..|... ..+.-+.++|+|+.|.|..|+
T Consensus 39 kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENP 99 (388)
T ss_pred hcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCC
Confidence 34445555555444443 122344445555555444211 112223444455555554444
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.53 E-value=0.0041 Score=54.99 Aligned_cols=88 Identities=23% Similarity=0.204 Sum_probs=54.9
Q ss_pred hcCCCCCCcceEEEeecCCCCCCChhhh-cCCCccEEEEecCCC--CCcCCCCCCCCCCCeeEecCCcCeeeCc--cccC
Q 007330 421 EALKPHSNLVALDILGFKGKITFPKWIM-SLNNLKSLHLRSCEK--CEILSPLGKLPSLETLYIAGMSGKRVGD--EFFG 495 (607)
Q Consensus 421 ~~l~~~~~L~~L~l~~~~~~~~lp~~l~-~l~~L~~L~L~~~~~--~~~~~~l~~l~~L~~L~L~~~~~~~~~~--~~~~ 495 (607)
..+..++.|..|.+.+|.+.. +...+. .+++|..|.|.+|.. +.++..+..+|.|++|.+-+|+++.-.. ..+-
T Consensus 58 ~~lp~l~rL~tLll~nNrIt~-I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl 136 (233)
T KOG1644|consen 58 DNLPHLPRLHTLLLNNNRITR-IDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVL 136 (233)
T ss_pred ccCCCccccceEEecCCccee-eccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEE
Confidence 445566777777777777776 333333 667788888887763 3466667777888888877776433221 1110
Q ss_pred CCCCCccCCCccceeeeccc
Q 007330 496 IGSDCNIAFPKLKFLRVVDM 515 (607)
Q Consensus 496 ~~~~~~~~~~~L~~L~l~~~ 515 (607)
-.+|+|+.|++...
T Consensus 137 ------~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 137 ------YKLPSLRTLDFQKV 150 (233)
T ss_pred ------EecCcceEeehhhh
Confidence 24677777776653
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.51 E-value=0.0013 Score=60.63 Aligned_cols=60 Identities=27% Similarity=0.284 Sum_probs=27.5
Q ss_pred CcccccEEecCCC--C-cccCchhhhcCCcccEeecCCCCCccccc--cccccccCcccccccccc
Q 007330 266 KLVHLRYLKLSLL--M-REELPDIVCELFNLQTLEVEHCPRLKRLP--QGIGKLVNLRHLIYYYSN 326 (607)
Q Consensus 266 ~l~~L~~L~L~~~--~-i~~lp~~i~~L~~L~~L~L~~~~~l~~lp--~~i~~l~~L~~L~~~~~~ 326 (607)
.|++|++|.++.| . ...++..+.++++|++|++++|+ ++.+. ..+..+.+|..|+++.+.
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccchhhhhcchhhhhcccCC
Confidence 4555555555555 2 23333334445555555555554 33210 123344445555544433
No 66
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.25 E-value=0.0018 Score=35.38 Aligned_cols=17 Identities=35% Similarity=0.399 Sum_probs=7.5
Q ss_pred ccEEecCCCCcccCchh
Q 007330 270 LRYLKLSLLMREELPDI 286 (607)
Q Consensus 270 L~~L~L~~~~i~~lp~~ 286 (607)
|++|++++|.++.+|++
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 44444444444444443
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.22 E-value=0.00056 Score=72.77 Aligned_cols=34 Identities=24% Similarity=0.197 Sum_probs=23.1
Q ss_pred cccccEEecCCCC-ccc--CchhhhcCCcccEeecCC
Q 007330 267 LVHLRYLKLSLLM-REE--LPDIVCELFNLQTLEVEH 300 (607)
Q Consensus 267 l~~L~~L~L~~~~-i~~--lp~~i~~L~~L~~L~L~~ 300 (607)
.+.|+.|.+.++. +.. +-.....+++|+.|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 5777777777765 444 334466778888888877
No 68
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.99 E-value=0.0024 Score=58.95 Aligned_cols=252 Identities=16% Similarity=0.053 Sum_probs=131.6
Q ss_pred ccCcccccEEecCCCCccc-----CchhhhcCCcccEeecCCCCCcc----cccc-------ccccccCccccccccccc
Q 007330 264 KEKLVHLRYLKLSLLMREE-----LPDIVCELFNLQTLEVEHCPRLK----RLPQ-------GIGKLVNLRHLIYYYSNL 327 (607)
Q Consensus 264 ~~~l~~L~~L~L~~~~i~~-----lp~~i~~L~~L~~L~L~~~~~l~----~lp~-------~i~~l~~L~~L~~~~~~l 327 (607)
+..+..+..++||||.|.+ +...|.+-.+|+.-++++-. .. ++|. .+-++++|+..+++.|.+
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 4456778888888887643 33345566777777776532 11 2322 234556666666555544
Q ss_pred c-cCcCCCCCCCCCCccCcEEecCCccCCCcccccccccccccCceEEEeccC--CCCCHh-------HHHHHHhcCCCC
Q 007330 328 D-YMPKGFERLTCLRTLTEFVVSGGKYSGKACNIEGLRHLNHLGGVFRITGLG--NVTDVD-------EAENAELEKKRN 397 (607)
Q Consensus 328 ~-~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~~~--~~~~~~-------~~~~~~l~~~~~ 397 (607)
. ..|+.++ ..++.-..|. .+.+.++. .+.... .+........+.
T Consensus 105 g~~~~e~L~----------------------d~is~~t~l~----HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~ 158 (388)
T COG5238 105 GSEFPEELG----------------------DLISSSTDLV----HLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPK 158 (388)
T ss_pred CcccchHHH----------------------HHHhcCCCce----eEEeecCCCCccchhHHHHHHHHHHHHhhhccCCC
Confidence 2 1222111 1112222333 33333332 211111 122233446678
Q ss_pred CcceEEEecCCCCCchhcHHHHhhcCCCCCCcceEEEeecCCCCCCChh--------hhcCCCccEEEEecCCCCCc---
Q 007330 398 VVDLGLWFDKDEEGEEADHEEIIEALKPHSNLVALDILGFKGKITFPKW--------IMSLNNLKSLHLRSCEKCEI--- 466 (607)
Q Consensus 398 L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~--------l~~l~~L~~L~L~~~~~~~~--- 466 (607)
|+......|+....... ..-..+....+|+.+.+..|.+. |.. +..+.+|+.|+|.+|.....
T Consensus 159 Le~vicgrNRlengs~~---~~a~~l~sh~~lk~vki~qNgIr---pegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~ 232 (388)
T COG5238 159 LEVVICGRNRLENGSKE---LSAALLESHENLKEVKIQQNGIR---PEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSR 232 (388)
T ss_pred ceEEEeccchhccCcHH---HHHHHHHhhcCceeEEeeecCcC---cchhHHHHHHHHHHhCcceeeeccccchhhhhHH
Confidence 88888877765433222 22223444568888888887764 332 22678899999988864321
Q ss_pred --CCCCCCCCCCCeeEecCCcCeeeCccc-cCCCCCCccCCCccceeeeccccccccccccccccCcccccccCCcccee
Q 007330 467 --LSPLGKLPSLETLYIAGMSGKRVGDEF-FGIGSDCNIAFPKLKFLRVVDMFEWEEWGFGITRSNVKEDVMVMPCLNYL 543 (607)
Q Consensus 467 --~~~l~~l~~L~~L~L~~~~~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L 543 (607)
-..+...+.|+.|.+.+|-++.-+... +.... -..+|+|..|...+...-..+... ++-....-..+|-|..|
T Consensus 233 ~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~--e~~~p~l~~L~~~Yne~~~~~i~~--~~l~~~e~~~~p~L~~l 308 (388)
T COG5238 233 YLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFN--EKFVPNLMPLPGDYNERRGGIILD--ISLNEFEQDAVPLLVDL 308 (388)
T ss_pred HHHHHhcccchhhhccccchhhccccHHHHHHHhh--hhcCCCccccccchhhhcCceeee--echhhhhhcccHHHHHH
Confidence 112456677889999888755444322 11000 025788888887775322111100 00011123478888888
Q ss_pred eeecccCccc
Q 007330 544 DIQFCFKLKA 553 (607)
Q Consensus 544 ~l~~c~~l~~ 553 (607)
.++++ .++.
T Consensus 309 e~ngN-r~~E 317 (388)
T COG5238 309 ERNGN-RIKE 317 (388)
T ss_pred HHccC-cchh
Confidence 88874 4443
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.81 E-value=0.0052 Score=56.69 Aligned_cols=85 Identities=19% Similarity=0.102 Sum_probs=56.4
Q ss_pred cCcccccEEecCCCCcccCchhhhcCCcccEeecCCC--CCccccccccccccCcccccccccccccCcCCCCCCCCCCc
Q 007330 265 EKLVHLRYLKLSLLMREELPDIVCELFNLQTLEVEHC--PRLKRLPQGIGKLVNLRHLIYYYSNLDYMPKGFERLTCLRT 342 (607)
Q Consensus 265 ~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~--~~l~~lp~~i~~l~~L~~L~~~~~~l~~lp~~i~~l~~L~~ 342 (607)
-.+..|+.|++.++.++++- .+-.|++|++|+++.| +-...++.-..++++|++|+++.|++.. +..+..+++|+.
T Consensus 40 d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~-lstl~pl~~l~n 117 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD-LSTLRPLKELEN 117 (260)
T ss_pred ccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc-ccccchhhhhcc
Confidence 34566777777777655552 2446899999999999 4344566556677999999999998865 344554555554
Q ss_pred cCcEEecCC
Q 007330 343 LTEFVVSGG 351 (607)
Q Consensus 343 L~~~~~~~~ 351 (607)
|..+....+
T Consensus 118 L~~Ldl~n~ 126 (260)
T KOG2739|consen 118 LKSLDLFNC 126 (260)
T ss_pred hhhhhcccC
Confidence 444334333
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.64 E-value=0.0049 Score=33.65 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=15.7
Q ss_pred cccEeecCCCCCcccccccccc
Q 007330 292 NLQTLEVEHCPRLKRLPQGIGK 313 (607)
Q Consensus 292 ~L~~L~L~~~~~l~~lp~~i~~ 313 (607)
+|++|||++|. ++.+|.++++
T Consensus 1 ~L~~Ldls~n~-l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNN-LTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSE-ESEEGTTTTT
T ss_pred CccEEECCCCc-CEeCChhhcC
Confidence 57888888885 7788876654
No 71
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.77 E-value=0.0022 Score=56.65 Aligned_cols=84 Identities=18% Similarity=0.104 Sum_probs=40.7
Q ss_pred ccEEEEecCCCC-CcCCCCCCCCCCCeeEecCCc-CeeeCccccCCCCCCccCCCccceeeeccccccccccccccccCc
Q 007330 453 LKSLHLRSCEKC-EILSPLGKLPSLETLYIAGMS-GKRVGDEFFGIGSDCNIAFPKLKFLRVVDMFEWEEWGFGITRSNV 530 (607)
Q Consensus 453 L~~L~L~~~~~~-~~~~~l~~l~~L~~L~L~~~~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 530 (607)
++.++-+++... +.+.-+..+++++.|.+.+|. +.+..-+..+ ..+|+|+.|+|++|+.+++....
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~------~~~~~L~~L~lsgC~rIT~~GL~------ 170 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLG------GLAPSLQDLDLSGCPRITDGGLA------ 170 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhc------ccccchheeeccCCCeechhHHH------
Confidence 444555544321 123345556666666666665 3332222222 14556666666666655544311
Q ss_pred ccccccCCccceeeeecccC
Q 007330 531 KEDVMVMPCLNYLDIQFCFK 550 (607)
Q Consensus 531 ~~~~~~~~~L~~L~l~~c~~ 550 (607)
.+..+++|+.|.|++.+.
T Consensus 171 --~L~~lknLr~L~l~~l~~ 188 (221)
T KOG3864|consen 171 --CLLKLKNLRRLHLYDLPY 188 (221)
T ss_pred --HHHHhhhhHHHHhcCchh
Confidence 144556666666555443
No 72
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.66 E-value=0.0027 Score=56.15 Aligned_cols=67 Identities=19% Similarity=0.356 Sum_probs=38.2
Q ss_pred CCCccceeeeccccccccccccccccCcccccccCCccceeeeecccCccccC-CCCCCCCCcCeEEEecCcchh
Q 007330 503 AFPKLKFLRVVDMFEWEEWGFGITRSNVKEDVMVMPCLNYLDIQFCFKLKALP-GYLLEITALEKLEILCCPILE 576 (607)
Q Consensus 503 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~c~~l~ 576 (607)
.++.++.|.+.+|..+.+|+-+ ..-+..|+|+.|+|++|+.+++-- ..+..+++|+.|.+.+.|.+.
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~-------~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLE-------RLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred ccchhhhheeccccchhhHHHH-------HhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhh
Confidence 4566666666666666666521 011256677777777776665421 234456666666666655433
No 73
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.64 E-value=0.0041 Score=66.08 Aligned_cols=171 Identities=24% Similarity=0.210 Sum_probs=98.1
Q ss_pred HhcCCCCCcceEEEecCCCCCchhcHHHHhhcCCCCCCcceEEEeec-CCCCCCC----hhhhcCCCccEEEEecCCCCC
Q 007330 391 ELEKKRNVVDLGLWFDKDEEGEEADHEEIIEALKPHSNLVALDILGF-KGKITFP----KWIMSLNNLKSLHLRSCEKCE 465 (607)
Q Consensus 391 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~lp----~~l~~l~~L~~L~L~~~~~~~ 465 (607)
....+++|+.|.+..+.... ...........++|+.|+++++ ......+ .....+++|+.|+++.|....
T Consensus 183 l~~~~~~L~~l~l~~~~~~~-----~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~is 257 (482)
T KOG1947|consen 183 LLSSCPLLKRLSLSGCSKIT-----DDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVT 257 (482)
T ss_pred HHhhCchhhHhhhcccccCC-----hhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccC
Confidence 33447888888887665322 1114455566788888888873 2222122 112266888888888886433
Q ss_pred --cCCCCC-CCCCCCeeEecCCc-CeeeCccccCCCCCCccCCCccceeeeccccccccccccccccCcccccccCCccc
Q 007330 466 --ILSPLG-KLPSLETLYIAGMS-GKRVGDEFFGIGSDCNIAFPKLKFLRVVDMFEWEEWGFGITRSNVKEDVMVMPCLN 541 (607)
Q Consensus 466 --~~~~l~-~l~~L~~L~L~~~~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~ 541 (607)
.+..+. .+++|+.|.+.+|. +++.+-.... ..+++|+.|++++|..+.+-. +......+++|+
T Consensus 258 d~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~------~~~~~L~~L~l~~c~~~~d~~-------l~~~~~~c~~l~ 324 (482)
T KOG1947|consen 258 DIGLSALASRCPNLETLSLSNCSNLTDEGLVSIA------ERCPSLRELDLSGCHGLTDSG-------LEALLKNCPNLR 324 (482)
T ss_pred chhHHHHHhhCCCcceEccCCCCccchhHHHHHH------HhcCcccEEeeecCccchHHH-------HHHHHHhCcchh
Confidence 222222 37888888887777 4444333322 267888888888887663211 111133567666
Q ss_pred eeeeeccc---CccccC-CCCCCC--CCcCeEEEecCcchhHhh
Q 007330 542 YLDIQFCF---KLKALP-GYLLEI--TALEKLEILCCPILEQRY 579 (607)
Q Consensus 542 ~L~l~~c~---~l~~lp-~~~~~l--~~L~~L~l~~c~~l~~~~ 579 (607)
.|.+..+. .++.+- ..+... ..+..+.+.+|++++...
T Consensus 325 ~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~ 368 (482)
T KOG1947|consen 325 ELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLS 368 (482)
T ss_pred hhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhh
Confidence 66655544 344322 111112 267777888888877644
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.31 E-value=0.0033 Score=56.72 Aligned_cols=84 Identities=14% Similarity=0.047 Sum_probs=47.4
Q ss_pred hccCCceeEEEecCcccccccccccccccccCcccccEEecCCCCcccCchhhhcCCcccEeecCCCCCccccccccccc
Q 007330 235 FDYLTCLRALKITGKVSWGQNSIYAIPKEKEKLVHLRYLKLSLLMREELPDIVCELFNLQTLEVEHCPRLKRLPQGIGKL 314 (607)
Q Consensus 235 ~~~l~~L~~L~L~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l 314 (607)
+..++...+||++ .+.+..+-..++-++.|..|+++.+.+..+|...+.+..++.+++..|. ....|.+.+++
T Consensus 38 i~~~kr~tvld~~------s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k~ 110 (326)
T KOG0473|consen 38 IASFKRVTVLDLS------SNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKKE 110 (326)
T ss_pred hhccceeeeehhh------hhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCCcccccc
Confidence 3344555556655 4555444445555555666666655566666666666666666655544 55566666666
Q ss_pred cCccccccccc
Q 007330 315 VNLRHLIYYYS 325 (607)
Q Consensus 315 ~~L~~L~~~~~ 325 (607)
+.+++++...+
T Consensus 111 ~~~k~~e~k~~ 121 (326)
T KOG0473|consen 111 PHPKKNEQKKT 121 (326)
T ss_pred CCcchhhhccC
Confidence 66666654443
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.24 E-value=0.027 Score=28.42 Aligned_cols=13 Identities=38% Similarity=0.199 Sum_probs=4.0
Q ss_pred ccEEecCCCCccc
Q 007330 270 LRYLKLSLLMREE 282 (607)
Q Consensus 270 L~~L~L~~~~i~~ 282 (607)
|+.|++++|.+++
T Consensus 3 L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 3 LRTLDLSNNRLTS 15 (17)
T ss_dssp -SEEEETSS--SS
T ss_pred cCEEECCCCCCCC
Confidence 3444444443333
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.00 E-value=0.0043 Score=56.00 Aligned_cols=87 Identities=18% Similarity=0.145 Sum_probs=76.5
Q ss_pred ccccc-ccccCcccccEEecCCCCcccCchhhhcCCcccEeecCCCCCccccccccccccCcccccccccccccCcCCCC
Q 007330 257 IYAIP-KEKEKLVHLRYLKLSLLMREELPDIVCELFNLQTLEVEHCPRLKRLPQGIGKLVNLRHLIYYYSNLDYMPKGFE 335 (607)
Q Consensus 257 l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~l~~lp~~i~ 335 (607)
+.++| ..+....+-+.||++.+.+..+-..++.++.|..||++.+. +..+|...+++..++++++..|+....|.+.+
T Consensus 30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq-~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~ 108 (326)
T KOG0473|consen 30 LSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQ-IKFLPKDAKQQRETVNAASHKNNHSQQPKSQK 108 (326)
T ss_pred hcccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhh-HhhChhhHHHHHHHHHHHhhccchhhCCcccc
Confidence 34444 34667889999999999988888889999999999999987 99999999999999999999999999999999
Q ss_pred CCCCCCccC
Q 007330 336 RLTCLRTLT 344 (607)
Q Consensus 336 ~l~~L~~L~ 344 (607)
.++.++.++
T Consensus 109 k~~~~k~~e 117 (326)
T KOG0473|consen 109 KEPHPKKNE 117 (326)
T ss_pred ccCCcchhh
Confidence 888888776
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.60 E-value=0.042 Score=27.75 Aligned_cols=17 Identities=41% Similarity=0.602 Sum_probs=10.0
Q ss_pred CcccEeecCCCCCccccc
Q 007330 291 FNLQTLEVEHCPRLKRLP 308 (607)
Q Consensus 291 ~~L~~L~L~~~~~l~~lp 308 (607)
++|+.|+|++|. ++++|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 468888888887 77665
No 78
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.40 E-value=0.15 Score=42.83 Aligned_cols=100 Identities=13% Similarity=0.241 Sum_probs=43.4
Q ss_pred cccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCccccccccccccc-ccccCcccccEEecCCCCcccCchh
Q 007330 208 SIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIP-KEKEKLVHLRYLKLSLLMREELPDI 286 (607)
Q Consensus 208 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~ 286 (607)
.+..+++|+.+.+... ...+-...|..+..|+.+.+. ++ +..++ ..+.++..|+.+.+.+ .+..++..
T Consensus 7 ~F~~~~~l~~i~~~~~---~~~I~~~~F~~~~~l~~i~~~------~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~ 75 (129)
T PF13306_consen 7 AFYNCSNLESITFPNT---IKKIGENAFSNCTSLKSINFP------NN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDN 75 (129)
T ss_dssp TTTT-TT--EEEETST-----EE-TTTTTT-TT-SEEEES------ST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TT
T ss_pred HHhCCCCCCEEEECCC---eeEeChhhccccccccccccc------cc-ccccceeeeecccccccccccc-cccccccc
Confidence 4555666676666543 233334456666667777766 32 44443 3355555667777654 44444433
Q ss_pred -hhcCCcccEeecCCCCCccccccc-cccccCccccc
Q 007330 287 -VCELFNLQTLEVEHCPRLKRLPQG-IGKLVNLRHLI 321 (607)
Q Consensus 287 -i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~ 321 (607)
+..+++|+.+++..+ +..++.. +.+. +|+.+.
T Consensus 76 ~F~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~ 109 (129)
T PF13306_consen 76 AFSNCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEIN 109 (129)
T ss_dssp TTTT-TTECEEEETTT---BEEHTTTTTT--T--EEE
T ss_pred cccccccccccccCcc--ccEEchhhhcCC-CceEEE
Confidence 445666766666542 4444333 2333 555554
No 79
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=91.72 E-value=0.84 Score=38.20 Aligned_cols=32 Identities=19% Similarity=0.310 Sum_probs=11.7
Q ss_pred cCCCccEEEEecCCCCCcC--CCCCCCCCCCeeEec
Q 007330 449 SLNNLKSLHLRSCEKCEIL--SPLGKLPSLETLYIA 482 (607)
Q Consensus 449 ~l~~L~~L~L~~~~~~~~~--~~l~~l~~L~~L~L~ 482 (607)
.+++|+.+.+..+ ...+ ..+..+++|+.+.+.
T Consensus 33 ~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 33 NCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp T-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEET
T ss_pred ccccccccccccc--ccccceeeeeccccccccccc
Confidence 4445555555442 1111 123444455555553
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.79 E-value=0.21 Score=28.41 Aligned_cols=19 Identities=37% Similarity=0.242 Sum_probs=10.7
Q ss_pred ccccEEecCCCCcccCchh
Q 007330 268 VHLRYLKLSLLMREELPDI 286 (607)
Q Consensus 268 ~~L~~L~L~~~~i~~lp~~ 286 (607)
++|++|+|++|.+..+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4555556655555555544
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.79 E-value=0.21 Score=28.41 Aligned_cols=19 Identities=37% Similarity=0.242 Sum_probs=10.7
Q ss_pred ccccEEecCCCCcccCchh
Q 007330 268 VHLRYLKLSLLMREELPDI 286 (607)
Q Consensus 268 ~~L~~L~L~~~~i~~lp~~ 286 (607)
++|++|+|++|.+..+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4555556655555555544
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.69 E-value=0.31 Score=27.69 Aligned_cols=21 Identities=38% Similarity=0.610 Sum_probs=13.2
Q ss_pred CCcccEeecCCCCCcccccccc
Q 007330 290 LFNLQTLEVEHCPRLKRLPQGI 311 (607)
Q Consensus 290 L~~L~~L~L~~~~~l~~lp~~i 311 (607)
|++|++|+|++|. +..+|.+.
T Consensus 1 L~~L~~L~L~~N~-l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQ-LSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCc-CCcCCHHH
Confidence 3566777777765 66666543
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.69 E-value=0.31 Score=27.69 Aligned_cols=21 Identities=38% Similarity=0.610 Sum_probs=13.2
Q ss_pred CCcccEeecCCCCCcccccccc
Q 007330 290 LFNLQTLEVEHCPRLKRLPQGI 311 (607)
Q Consensus 290 L~~L~~L~L~~~~~l~~lp~~i 311 (607)
|++|++|+|++|. +..+|.+.
T Consensus 1 L~~L~~L~L~~N~-l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQ-LSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCc-CCcCCHHH
Confidence 3566777777765 66666543
No 84
>PRK04841 transcriptional regulator MalT; Provisional
Probab=86.73 E-value=2.5 Score=49.05 Aligned_cols=125 Identities=16% Similarity=0.142 Sum_probs=79.2
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhhccCCChhHHHHHHhcccccccCcC-CCCchHHHHh-cccCCChhhHHHhhhhcccC
Q 007330 18 YESSKVQQGGVGIKTILHKFGNLLCLRRARKERGSSILDIEMGKLNEL-ENDPLAPLLL-SYNDFPPMIKLCFLYCAVFP 95 (607)
Q Consensus 18 ~~~~~i~~~c~GlPLal~~~g~~L~~~~~~~~W~~~~~~~~~~~l~~~-~~~i~~~L~~-SYd~L~~~~k~cfL~~s~fp 95 (607)
+.+.++.+.|+|.|+++..++..++.......+ .. +.+.+. ...+...+.- -|+.||++.+..++..|+++
T Consensus 206 ~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~~~---~~----~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~ 278 (903)
T PRK04841 206 AESSRLCDDVEGWATALQLIALSARQNNSSLHD---SA----RRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR 278 (903)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCCchhh---hh----HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc
Confidence 456789999999999999999887654211111 00 112221 2235555443 48899999999999999987
Q ss_pred CCceeChhHHHHHHHHcCCcccCCCCcHHHHHHHHHHHHHHcCCCcccccCCCCCeeEEEECHHHHHHHHHhh
Q 007330 96 KGYNIEKDELIKLWMAQGYIRPIGNKEMEVIGQEYFDYLATRSFFQKFDKDDEDNVTRCKMSDAVHDFAQFLT 168 (607)
Q Consensus 96 ~~~~i~~~~Li~~wi~~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mhdli~~~~~~~~ 168 (607)
.++ ..+... +.+. +.+...+.+|.+.+++...... .+ ..++.|++++++.....
T Consensus 279 ---~~~-~~l~~~-----l~~~-------~~~~~~L~~l~~~~l~~~~~~~-~~--~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 279 ---SMN-DALIVR-----VTGE-------ENGQMRLEELERQGLFIQRMDD-SG--EWFRYHPLFASFLRHRC 332 (903)
T ss_pred ---cCC-HHHHHH-----HcCC-------CcHHHHHHHHHHCCCeeEeecC-CC--CEEehhHHHHHHHHHHH
Confidence 233 223221 1111 1257789999999997532211 11 35778999999998754
No 85
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=81.21 E-value=0.84 Score=25.91 Aligned_cols=14 Identities=36% Similarity=0.638 Sum_probs=6.4
Q ss_pred CccceeeeecccCc
Q 007330 538 PCLNYLDIQFCFKL 551 (607)
Q Consensus 538 ~~L~~L~l~~c~~l 551 (607)
|+|++|++++|+++
T Consensus 2 ~~L~~L~l~~C~~i 15 (26)
T smart00367 2 PNLRELDLSGCTNI 15 (26)
T ss_pred CCCCEeCCCCCCCc
Confidence 34444444444443
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=77.98 E-value=1.5 Score=24.91 Aligned_cols=17 Identities=29% Similarity=0.350 Sum_probs=11.1
Q ss_pred cccEEecCCCCcccCch
Q 007330 269 HLRYLKLSLLMREELPD 285 (607)
Q Consensus 269 ~L~~L~L~~~~i~~lp~ 285 (607)
+|++|++++|.++++|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 46666666666666665
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=67.79 E-value=4.2 Score=23.16 Aligned_cols=14 Identities=29% Similarity=0.154 Sum_probs=6.7
Q ss_pred ccccEEecCCCCcc
Q 007330 268 VHLRYLKLSLLMRE 281 (607)
Q Consensus 268 ~~L~~L~L~~~~i~ 281 (607)
++|+.|++++|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34455555555443
No 88
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=56.06 E-value=7.4 Score=21.33 Aligned_cols=13 Identities=31% Similarity=0.337 Sum_probs=7.7
Q ss_pred CCcccEeecCCCC
Q 007330 290 LFNLQTLEVEHCP 302 (607)
Q Consensus 290 L~~L~~L~L~~~~ 302 (607)
+++|++|+|++|.
T Consensus 1 ~~~L~~L~l~~n~ 13 (24)
T PF13516_consen 1 NPNLETLDLSNNQ 13 (24)
T ss_dssp -TT-SEEE-TSSB
T ss_pred CCCCCEEEccCCc
Confidence 3677888888876
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=49.20 E-value=12 Score=21.52 Aligned_cols=12 Identities=42% Similarity=0.193 Sum_probs=6.2
Q ss_pred cccEEecCCCCc
Q 007330 269 HLRYLKLSLLMR 280 (607)
Q Consensus 269 ~L~~L~L~~~~i 280 (607)
+|++|+|++|.+
T Consensus 3 ~L~~LdL~~N~i 14 (28)
T smart00368 3 SLRELDLSNNKL 14 (28)
T ss_pred ccCEEECCCCCC
Confidence 455555555544
No 90
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=38.04 E-value=1.6 Score=45.79 Aligned_cols=86 Identities=21% Similarity=0.104 Sum_probs=49.4
Q ss_pred eeEEEecCcccccccccccccccccCcccccEEecCCCCcccCc-----hhhhcC-CcccEeecCCCCCcc----ccccc
Q 007330 241 LRALKITGKVSWGQNSIYAIPKEKEKLVHLRYLKLSLLMREELP-----DIVCEL-FNLQTLEVEHCPRLK----RLPQG 310 (607)
Q Consensus 241 L~~L~L~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp-----~~i~~L-~~L~~L~L~~~~~l~----~lp~~ 310 (607)
+..|.|.+|..- ......+-..+.....|..|++++|.+...- ..+... ..|++|++..|..-. .+.+.
T Consensus 89 l~~L~L~~~~l~-~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 89 LLHLSLANNRLG-DRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred HHHhhhhhCccc-cchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 677777732111 1223334456667788888888888865221 112222 556777777776222 24555
Q ss_pred cccccCccccccccccc
Q 007330 311 IGKLVNLRHLIYYYSNL 327 (607)
Q Consensus 311 i~~l~~L~~L~~~~~~l 327 (607)
+.....++.++++-|.+
T Consensus 168 L~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGL 184 (478)
T ss_pred HhcccchhHHHHHhccc
Confidence 66667777777666655
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=35.83 E-value=16 Score=38.13 Aligned_cols=84 Identities=23% Similarity=0.248 Sum_probs=48.5
Q ss_pred CCCCCcceEEEeecCCCCCCCh--hh-hcCCCccEEEEecCCC-CCc---CCCCCCCCCCCeeEecCCcC-eeeCc--cc
Q 007330 424 KPHSNLVALDILGFKGKITFPK--WI-MSLNNLKSLHLRSCEK-CEI---LSPLGKLPSLETLYIAGMSG-KRVGD--EF 493 (607)
Q Consensus 424 ~~~~~L~~L~l~~~~~~~~lp~--~l-~~l~~L~~L~L~~~~~-~~~---~~~l~~l~~L~~L~L~~~~~-~~~~~--~~ 493 (607)
.+.+.+.++++++|.+.. +.. .+ ...|+|+.|+|++|+. ... ++.++++ .|++|-+.+|++ +.... +.
T Consensus 215 ~n~p~i~sl~lsnNrL~~-Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l-~Leel~l~GNPlc~tf~~~s~y 292 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYH-LDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGL-PLEELVLEGNPLCTTFSDRSEY 292 (585)
T ss_pred cCCcceeeeecccchhhc-hhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCC-CHHHeeecCCccccchhhhHHH
Confidence 466788888888888765 321 11 2678899999998842 222 2223333 488888888883 22211 11
Q ss_pred cCCCCCCccCCCccceeee
Q 007330 494 FGIGSDCNIAFPKLKFLRV 512 (607)
Q Consensus 494 ~~~~~~~~~~~~~L~~L~l 512 (607)
+.. ....||+|..|+=
T Consensus 293 v~~---i~~~FPKL~~LDG 308 (585)
T KOG3763|consen 293 VSA---IRELFPKLLRLDG 308 (585)
T ss_pred HHH---HHHhcchheeecC
Confidence 110 0126888877753
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=31.74 E-value=31 Score=36.21 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=17.7
Q ss_pred CCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEec
Q 007330 211 KAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKIT 247 (607)
Q Consensus 211 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~ 247 (607)
+.+.+.++.+++|+....+.+...-...++|+.|+|+
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS 252 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLS 252 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecc
Confidence 3455555555555432233333334445555555555
No 93
>PF14050 Nudc_N: N-terminal conserved domain of Nudc.
Probab=30.10 E-value=97 Score=22.08 Aligned_cols=32 Identities=19% Similarity=0.172 Sum_probs=27.9
Q ss_pred chHHHHHHHHhcCCChHHHHHHHHHhhccCCC
Q 007330 15 KLLYESSKVQQGGVGIKTILHKFGNLLCLRRA 46 (607)
Q Consensus 15 ~~~~~~~~i~~~c~GlPLal~~~g~~L~~~~~ 46 (607)
.+..+--.|++.|+|++=-+-++-+.|+.|.|
T Consensus 2 ~~D~~ll~iaq~~~~I~~~Ld~fF~FL~RkTD 33 (62)
T PF14050_consen 2 RFDNMLLSIAQQCGGIEDFLDTFFSFLRRKTD 33 (62)
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHhccCc
Confidence 45667788999999999999999999999853
Done!