Query 007330
Match_columns 607
No_of_seqs 362 out of 3547
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 23:04:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007330.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007330hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4eco_A Uncharacterized protein 100.0 1.6E-29 5.6E-34 275.1 10.0 349 190-574 81-578 (636)
2 4ecn_A Leucine-rich repeat pro 100.0 3.8E-28 1.3E-32 268.9 15.0 341 189-574 447-839 (876)
3 3vq2_A TLR4, TOLL-like recepto 100.0 2.6E-27 8.9E-32 257.8 21.2 376 189-605 31-487 (606)
4 3rgz_A Protein brassinosteroid 100.0 1.4E-28 4.8E-33 274.1 11.4 383 189-597 268-766 (768)
5 3rgz_A Protein brassinosteroid 99.9 2.6E-28 8.9E-33 271.9 13.2 377 189-605 246-718 (768)
6 4ecn_A Leucine-rich repeat pro 99.9 5.8E-28 2E-32 267.3 15.6 329 231-603 440-839 (876)
7 4eco_A Uncharacterized protein 99.9 2.6E-28 8.9E-33 265.7 12.3 336 189-574 205-599 (636)
8 3t6q_A CD180 antigen; protein- 99.9 7.3E-27 2.5E-31 254.3 18.6 385 189-605 32-490 (606)
9 2z63_A TOLL-like receptor 4, v 99.9 3.8E-27 1.3E-31 254.7 15.8 134 189-331 27-165 (570)
10 1o6v_A Internalin A; bacterial 99.9 6.3E-26 2.2E-30 238.2 22.8 275 189-515 45-319 (466)
11 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 4.7E-26 1.6E-30 245.2 21.8 370 192-604 33-510 (562)
12 2z7x_B TOLL-like receptor 1, v 99.9 6.1E-26 2.1E-30 242.2 22.4 126 189-327 20-150 (520)
13 2z81_A CD282 antigen, TOLL-lik 99.9 4.4E-26 1.5E-30 245.1 20.4 284 189-491 25-427 (549)
14 3vq2_A TLR4, TOLL-like recepto 99.9 9.2E-27 3.2E-31 253.5 15.2 144 189-341 55-207 (606)
15 4fmz_A Internalin; leucine ric 99.9 8.1E-26 2.8E-30 228.2 19.0 302 189-573 43-344 (347)
16 3t6q_A CD180 antigen; protein- 99.9 3.3E-26 1.1E-30 249.1 16.3 130 189-327 56-191 (606)
17 3v47_A TOLL-like receptor 5B a 99.9 1.3E-25 4.4E-30 235.5 20.1 356 189-573 29-406 (455)
18 2z7x_B TOLL-like receptor 1, v 99.9 1.3E-25 4.4E-30 239.7 18.7 145 193-353 3-150 (520)
19 3o6n_A APL1; leucine-rich repe 99.9 2.9E-25 1E-29 227.7 20.3 304 211-574 43-351 (390)
20 2id5_A Lingo-1, leucine rich r 99.9 5.3E-25 1.8E-29 232.2 20.8 313 193-573 14-331 (477)
21 4fmz_A Internalin; leucine ric 99.9 8.3E-25 2.8E-29 220.8 20.3 297 172-549 48-344 (347)
22 1ziw_A TOLL-like receptor 3; i 99.9 1.3E-25 4.5E-30 247.7 15.3 382 189-604 24-467 (680)
23 2z63_A TOLL-like receptor 4, v 99.9 5.9E-26 2E-30 245.3 11.2 147 194-354 11-162 (570)
24 1o6v_A Internalin A; bacterial 99.9 1.8E-24 6.1E-29 227.1 21.9 322 188-574 66-387 (466)
25 2z81_A CD282 antigen, TOLL-lik 99.9 1.5E-24 5.3E-29 233.1 21.8 369 198-604 13-510 (549)
26 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2E-24 6.9E-29 232.4 21.9 341 189-574 51-509 (562)
27 3oja_B Anopheles plasmodium-re 99.9 1.4E-24 4.7E-29 235.0 20.2 304 211-574 49-357 (597)
28 3v47_A TOLL-like receptor 5B a 99.9 2.3E-24 7.8E-29 226.1 20.1 366 194-605 14-409 (455)
29 3bz5_A Internalin-J, INLJ; leu 99.9 3.5E-24 1.2E-28 223.1 19.6 314 206-573 35-350 (457)
30 3o6n_A APL1; leucine-rich repe 99.9 9.6E-25 3.3E-29 223.9 14.8 303 189-549 44-350 (390)
31 3j0a_A TOLL-like receptor 5; m 99.9 4.1E-24 1.4E-28 240.6 21.0 302 188-515 22-372 (844)
32 4fcg_A Uncharacterized protein 99.9 5.9E-24 2E-28 211.9 16.9 230 237-571 79-310 (328)
33 1ziw_A TOLL-like receptor 3; i 99.9 3.6E-24 1.2E-28 236.2 16.8 348 194-573 8-364 (680)
34 3bz5_A Internalin-J, INLJ; leu 99.9 2.7E-23 9.1E-28 216.5 21.6 303 189-555 41-355 (457)
35 3oja_B Anopheles plasmodium-re 99.9 1.8E-24 6E-29 234.2 12.2 303 189-549 50-356 (597)
36 3j0a_A TOLL-like receptor 5; m 99.9 4.4E-23 1.5E-27 232.2 22.9 338 193-573 7-392 (844)
37 2id5_A Lingo-1, leucine rich r 99.9 1.7E-23 5.8E-28 220.7 18.3 294 189-549 31-331 (477)
38 2ft3_A Biglycan; proteoglycan, 99.9 4.6E-23 1.6E-27 206.4 16.4 246 191-494 34-284 (332)
39 4fcg_A Uncharacterized protein 99.9 2.4E-22 8.2E-27 200.2 16.7 220 212-547 80-310 (328)
40 1xku_A Decorin; proteoglycan, 99.9 4.1E-22 1.4E-26 199.3 17.7 246 192-494 33-283 (330)
41 4g8a_A TOLL-like receptor 4; l 99.9 3.4E-22 1.2E-26 218.8 18.6 143 189-340 51-199 (635)
42 1xku_A Decorin; proteoglycan, 99.9 5.6E-22 1.9E-26 198.3 16.9 263 240-573 32-304 (330)
43 2ft3_A Biglycan; proteoglycan, 99.9 1.6E-22 5.5E-27 202.5 11.8 292 214-573 34-331 (332)
44 1jl5_A Outer protein YOPM; leu 99.9 5.9E-22 2E-26 206.1 16.1 320 189-573 10-368 (454)
45 1ogq_A PGIP-2, polygalacturona 99.9 6.2E-23 2.1E-27 203.2 8.1 118 214-338 51-173 (313)
46 1ogq_A PGIP-2, polygalacturona 99.9 5.4E-23 1.8E-27 203.7 7.4 245 190-485 50-302 (313)
47 2a5y_B CED-4; apoptosis; HET: 99.9 2.2E-23 7.4E-28 222.2 3.7 159 1-173 301-473 (549)
48 1jl5_A Outer protein YOPM; leu 99.9 1.5E-20 5.2E-25 195.5 21.1 301 189-573 90-407 (454)
49 4g8a_A TOLL-like receptor 4; l 99.8 1.1E-20 3.8E-25 206.8 18.0 142 199-354 40-186 (635)
50 2z66_A Variable lymphocyte rec 99.8 9.3E-21 3.2E-25 187.4 13.3 237 254-573 16-259 (306)
51 3g06_A SSPH2 (leucine-rich rep 99.8 4E-20 1.4E-24 198.3 18.2 119 191-333 41-159 (622)
52 2z80_A TOLL-like receptor 2, v 99.8 6.5E-21 2.2E-25 192.5 11.4 255 239-574 52-313 (353)
53 3o53_A Protein LRIM1, AGAP0063 99.8 2.2E-21 7.5E-26 192.7 4.7 264 215-554 12-278 (317)
54 2z66_A Variable lymphocyte rec 99.8 1.8E-20 6.2E-25 185.3 11.0 87 422-515 170-258 (306)
55 3zyi_A Leucine-rich repeat-con 99.8 1.2E-19 4.2E-24 189.5 16.6 146 193-352 57-207 (452)
56 3zyi_A Leucine-rich repeat-con 99.8 5.3E-19 1.8E-23 184.7 20.0 76 254-332 63-140 (452)
57 3zyj_A Leucine-rich repeat-con 99.8 2.1E-19 7.1E-24 187.1 16.7 146 193-352 46-196 (440)
58 2z80_A TOLL-like receptor 2, v 99.8 1.7E-19 5.7E-24 182.2 15.2 265 195-485 36-312 (353)
59 3zyj_A Leucine-rich repeat-con 99.8 7E-19 2.4E-23 183.1 20.3 109 423-549 181-290 (440)
60 1z7x_W Ribonuclease inhibitor; 99.8 1.1E-21 3.6E-26 206.1 -2.3 363 189-574 2-410 (461)
61 3g06_A SSPH2 (leucine-rich rep 99.8 1.5E-18 5E-23 186.1 19.7 237 239-575 61-297 (622)
62 1ozn_A Reticulon 4 receptor; N 99.8 1.9E-19 6.6E-24 175.9 11.3 128 193-331 14-145 (285)
63 3o53_A Protein LRIM1, AGAP0063 99.8 2E-20 6.7E-25 185.8 3.8 247 209-522 30-279 (317)
64 3oja_A Leucine-rich immune mol 99.8 5.4E-20 1.8E-24 193.3 6.3 100 236-352 31-131 (487)
65 3ogk_B Coronatine-insensitive 99.8 1.2E-19 4.1E-24 196.8 8.4 204 189-404 111-326 (592)
66 3ogk_B Coronatine-insensitive 99.8 5.1E-20 1.8E-24 199.7 5.4 347 190-573 138-524 (592)
67 1ozn_A Reticulon 4 receptor; N 99.8 4.8E-18 1.6E-22 166.0 18.1 218 242-549 14-236 (285)
68 1z7x_W Ribonuclease inhibitor; 99.8 2.3E-21 7.9E-26 203.5 -7.8 368 212-604 2-411 (461)
69 2p1m_B Transport inhibitor res 99.8 1.5E-19 5.1E-24 196.2 5.8 366 189-576 104-520 (594)
70 3oja_A Leucine-rich immune mol 99.8 1.7E-18 6E-23 181.8 12.4 236 266-570 32-270 (487)
71 1wwl_A Monocyte differentiatio 99.7 1.1E-19 3.7E-24 180.0 0.6 77 266-343 93-178 (312)
72 2xwt_C Thyrotropin receptor; s 99.7 2.6E-17 8.8E-22 156.2 15.3 206 257-574 23-238 (239)
73 1h6u_A Internalin H; cell adhe 99.7 1.5E-17 5.2E-22 164.0 11.8 66 423-491 169-234 (308)
74 1p9a_G Platelet glycoprotein I 99.7 9.6E-17 3.3E-21 156.6 16.9 98 236-343 7-105 (290)
75 1wwl_A Monocyte differentiatio 99.7 6.3E-19 2.2E-23 174.5 0.8 245 235-549 39-307 (312)
76 2o6q_A Variable lymphocyte rec 99.7 1.7E-16 5.8E-21 153.5 17.6 194 240-515 17-215 (270)
77 3rfs_A Internalin B, repeat mo 99.7 1E-16 3.5E-21 155.2 15.4 114 427-563 133-247 (272)
78 2xwt_C Thyrotropin receptor; s 99.7 5.4E-17 1.9E-21 154.0 13.0 105 240-351 32-140 (239)
79 1p9a_G Platelet glycoprotein I 99.7 1.6E-16 5.6E-21 155.0 15.6 198 209-485 6-206 (290)
80 2z62_A TOLL-like receptor 4, v 99.7 6E-17 2E-21 157.3 12.2 123 213-344 28-155 (276)
81 2z62_A TOLL-like receptor 4, v 99.7 5.8E-17 2E-21 157.5 12.1 84 240-330 29-115 (276)
82 4ay9_X Follicle-stimulating ho 99.7 1.6E-16 5.4E-21 159.9 14.6 236 242-547 12-255 (350)
83 1h6u_A Internalin H; cell adhe 99.7 3.1E-16 1.1E-20 154.6 14.3 190 236-515 38-227 (308)
84 2o6q_A Variable lymphocyte rec 99.7 6.6E-16 2.3E-20 149.3 15.8 176 239-486 37-217 (270)
85 3rfs_A Internalin B, repeat mo 99.7 5.5E-16 1.9E-20 150.0 14.8 84 425-522 155-239 (272)
86 2ast_B S-phase kinase-associat 99.7 2.7E-17 9.4E-22 164.7 3.7 223 213-515 47-282 (336)
87 4glp_A Monocyte differentiatio 99.6 5.5E-16 1.9E-20 153.2 12.5 131 211-352 62-208 (310)
88 3sfz_A APAF-1, apoptotic pepti 99.6 1.9E-16 6.5E-21 186.8 9.7 143 12-171 302-452 (1249)
89 2ca6_A RAN GTPase-activating p 99.6 1.1E-17 3.8E-22 170.9 -0.7 125 203-328 22-172 (386)
90 2p1m_B Transport inhibitor res 99.6 1.4E-17 4.7E-22 180.7 -2.0 238 306-571 280-540 (594)
91 2ast_B S-phase kinase-associat 99.6 9E-17 3.1E-21 161.0 4.0 222 191-484 48-282 (336)
92 2ca6_A RAN GTPase-activating p 99.6 4.7E-17 1.6E-21 166.2 0.9 239 231-516 24-314 (386)
93 1h6t_A Internalin B; cell adhe 99.6 2.6E-15 9E-20 146.6 11.2 62 425-489 154-215 (291)
94 4ay9_X Follicle-stimulating ho 99.6 5.5E-15 1.9E-19 148.6 13.3 217 239-514 30-255 (350)
95 1vt4_I APAF-1 related killer D 99.6 9E-16 3.1E-20 166.5 6.9 118 18-164 317-436 (1221)
96 3m19_A Variable lymphocyte rec 99.6 2.8E-14 9.6E-19 136.2 16.2 173 239-486 14-191 (251)
97 1m9s_A Internalin B; cell inva 99.6 5.9E-15 2E-19 158.0 11.3 64 423-489 149-212 (605)
98 4glp_A Monocyte differentiatio 99.6 5.2E-15 1.8E-19 146.1 9.8 201 212-487 90-307 (310)
99 3goz_A Leucine-rich repeat-con 99.6 9.7E-16 3.3E-20 154.9 3.3 94 230-330 13-124 (362)
100 1h6t_A Internalin B; cell adhe 99.5 3E-14 1E-18 139.0 13.0 170 264-516 42-211 (291)
101 3cvr_A Invasion plasmid antige 99.5 1.6E-14 5.4E-19 153.0 11.4 93 239-352 59-151 (571)
102 1xeu_A Internalin C; cellular 99.5 7.1E-15 2.4E-19 141.1 7.6 172 237-490 17-188 (263)
103 1m9s_A Internalin B; cell inva 99.5 1.6E-14 5.5E-19 154.6 10.2 179 254-516 30-208 (605)
104 3m19_A Variable lymphocyte rec 99.5 5.4E-14 1.8E-18 134.2 10.4 152 190-353 35-191 (251)
105 2o6s_A Variable lymphocyte rec 99.5 3E-14 1E-18 131.8 8.3 139 194-343 11-153 (208)
106 4ezg_A Putative uncharacterize 99.5 8.5E-14 2.9E-18 127.5 11.0 148 189-352 43-192 (197)
107 3cvr_A Invasion plasmid antige 99.5 1E-13 3.4E-18 146.8 12.7 118 191-332 60-177 (571)
108 4ezg_A Putative uncharacterize 99.5 4E-14 1.4E-18 129.6 8.5 151 265-486 41-193 (197)
109 1z6t_A APAF-1, apoptotic prote 99.5 2E-14 7E-19 155.3 7.1 138 14-168 304-449 (591)
110 3goz_A Leucine-rich repeat-con 99.5 1.8E-14 6.1E-19 145.6 5.9 235 209-485 18-295 (362)
111 3e6j_A Variable lymphocyte rec 99.5 1.7E-13 5.9E-18 128.6 11.0 149 193-355 22-173 (229)
112 4b8c_D Glucose-repressible alc 99.5 2E-14 7E-19 157.8 4.3 158 189-356 172-331 (727)
113 2o6s_A Variable lymphocyte rec 99.5 9.2E-13 3.1E-17 121.7 14.8 76 254-332 16-93 (208)
114 1dce_A Protein (RAB geranylger 99.4 2.2E-15 7.5E-20 160.4 -3.8 119 428-568 442-566 (567)
115 2v9t_B SLIT homolog 2 protein 99.4 7.3E-13 2.5E-17 123.4 13.5 83 242-333 14-98 (220)
116 2ell_A Acidic leucine-rich nuc 99.4 1.4E-13 4.9E-18 122.5 7.9 132 190-332 24-164 (168)
117 1dce_A Protein (RAB geranylger 99.4 4.6E-16 1.6E-20 165.6 -10.2 205 265-544 346-566 (567)
118 2v9t_B SLIT homolog 2 protein 99.4 2.9E-13 9.9E-18 126.1 9.7 146 194-353 15-164 (220)
119 2v70_A SLIT-2, SLIT homolog 2 99.4 6.5E-13 2.2E-17 123.7 10.2 147 193-353 14-165 (220)
120 2ell_A Acidic leucine-rich nuc 99.4 5.9E-13 2E-17 118.4 8.5 130 210-349 21-158 (168)
121 2xot_A Amphoterin-induced prot 99.4 1E-12 3.6E-17 132.4 9.7 170 242-486 21-201 (361)
122 2je0_A Acidic leucine-rich nuc 99.4 3.9E-13 1.3E-17 117.0 4.9 123 212-344 16-146 (149)
123 3e6j_A Variable lymphocyte rec 99.4 1.9E-12 6.6E-17 121.4 9.9 131 189-328 39-172 (229)
124 1xeu_A Internalin C; cellular 99.4 2.1E-12 7.3E-17 123.8 10.3 145 189-353 40-184 (263)
125 1a9n_A U2A', U2A'; complex (nu 99.3 1.3E-12 4.3E-17 117.2 7.0 128 207-345 13-147 (176)
126 2je0_A Acidic leucine-rich nuc 99.3 1.2E-12 3.9E-17 114.0 5.4 124 189-323 16-148 (149)
127 2v70_A SLIT-2, SLIT homolog 2 99.3 3.2E-12 1.1E-16 119.0 8.7 131 189-328 31-166 (220)
128 1a9n_A U2A', U2A'; complex (nu 99.3 3.8E-12 1.3E-16 114.1 5.7 129 189-329 18-154 (176)
129 2xot_A Amphoterin-induced prot 99.2 1.1E-11 3.7E-16 125.0 9.0 152 193-355 21-177 (361)
130 4b8c_D Glucose-repressible alc 99.2 6.7E-12 2.3E-16 137.9 6.3 115 206-330 217-331 (727)
131 1w8a_A SLIT protein; signaling 99.2 1.7E-11 5.9E-16 111.4 7.5 65 264-329 50-116 (192)
132 3sb4_A Hypothetical leucine ri 99.2 1.3E-10 4.4E-15 115.5 14.4 283 212-568 24-327 (329)
133 2o6r_A Variable lymphocyte rec 99.2 5.3E-11 1.8E-15 106.7 9.0 106 213-327 28-136 (177)
134 2wfh_A SLIT homolog 2 protein 99.2 5.9E-11 2E-15 107.8 8.7 86 240-332 32-119 (193)
135 1w8a_A SLIT protein; signaling 99.2 4.5E-11 1.5E-15 108.6 7.7 125 193-328 11-139 (192)
136 1ds9_A Outer arm dynein; leuci 99.1 5.8E-13 2E-17 122.0 -6.5 126 192-329 25-154 (198)
137 2wfh_A SLIT homolog 2 protein 99.1 1.1E-10 3.6E-15 106.1 8.5 124 193-328 13-139 (193)
138 3sb4_A Hypothetical leucine ri 99.1 4.4E-11 1.5E-15 118.9 4.9 266 237-572 23-307 (329)
139 2r9u_A Variable lymphocyte rec 99.1 2E-10 6.7E-15 102.4 8.7 100 242-353 15-117 (174)
140 1ds9_A Outer arm dynein; leuci 99.1 1.6E-12 5.5E-17 119.0 -5.9 126 214-352 24-151 (198)
141 3g39_A Variable lymphocyte rec 99.0 3.8E-10 1.3E-14 100.1 8.7 103 241-355 11-116 (170)
142 2o6r_A Variable lymphocyte rec 99.0 3.2E-10 1.1E-14 101.5 7.9 108 238-355 27-138 (177)
143 2r9u_A Variable lymphocyte rec 99.0 5.8E-10 2E-14 99.3 7.2 87 239-332 33-122 (174)
144 4fdw_A Leucine rich hypothetic 98.9 4.9E-08 1.7E-12 99.1 18.8 139 427-590 248-394 (401)
145 3g39_A Variable lymphocyte rec 98.9 2.2E-09 7.6E-14 95.2 6.8 83 239-328 30-115 (170)
146 4fdw_A Leucine rich hypothetic 98.7 2.2E-07 7.4E-12 94.3 16.3 83 422-515 266-355 (401)
147 2ifg_A High affinity nerve gro 98.6 4.4E-08 1.5E-12 97.9 8.5 95 254-353 17-115 (347)
148 4fs7_A Uncharacterized protein 98.5 1.4E-06 4.9E-11 88.5 16.0 126 423-571 249-375 (394)
149 2ifg_A High affinity nerve gro 98.5 1.3E-07 4.4E-12 94.5 6.8 93 201-302 20-114 (347)
150 4fs7_A Uncharacterized protein 98.3 6.2E-06 2.1E-10 83.7 15.3 303 206-567 64-393 (394)
151 2ra8_A Uncharacterized protein 98.3 6.8E-08 2.3E-12 96.2 0.6 136 423-573 168-318 (362)
152 3un9_A NLR family member X1; l 98.3 9E-08 3.1E-12 96.1 -0.2 154 189-353 71-251 (372)
153 3e4g_A ATP synthase subunit S, 98.2 3.1E-07 1.1E-11 80.1 1.7 40 538-577 114-154 (176)
154 2ra8_A Uncharacterized protein 98.2 5.2E-07 1.8E-11 89.8 3.3 176 419-604 131-320 (362)
155 3un9_A NLR family member X1; l 98.1 7.5E-07 2.6E-11 89.4 3.2 139 189-329 100-253 (372)
156 3e4g_A ATP synthase subunit S, 98.1 3.6E-06 1.2E-10 73.4 6.5 94 211-306 59-154 (176)
157 1io0_A Tropomodulin; LRR prote 98.1 1.4E-06 4.6E-11 78.1 3.8 118 208-327 31-163 (185)
158 4gt6_A Cell surface protein; l 98.1 9.8E-05 3.4E-09 74.8 16.8 307 207-573 57-368 (394)
159 1io0_A Tropomodulin; LRR prote 98.0 1.3E-06 4.6E-11 78.2 1.4 101 227-328 24-136 (185)
160 3rw6_A Nuclear RNA export fact 97.9 4.3E-06 1.5E-10 78.8 3.4 80 235-321 166-257 (267)
161 4gt6_A Cell surface protein; l 97.7 0.00071 2.4E-08 68.4 15.4 314 192-570 66-386 (394)
162 4h09_A Hypothetical leucine ri 97.5 0.00037 1.3E-08 70.1 10.9 81 208-300 41-122 (379)
163 4h09_A Hypothetical leucine ri 97.4 0.0016 5.4E-08 65.4 13.8 118 189-321 45-164 (379)
164 3rw6_A Nuclear RNA export fact 97.2 0.00032 1.1E-08 66.0 5.5 82 210-298 167-258 (267)
165 3rfe_A Platelet glycoprotein I 95.7 0.015 5.3E-07 47.9 5.8 52 243-302 12-66 (130)
166 1pgv_A TMD-1, tropomodulin TMD 94.7 0.021 7.1E-07 50.6 3.8 74 229-302 31-109 (197)
167 3rfe_A Platelet glycoprotein I 93.9 0.068 2.3E-06 44.0 5.0 54 271-327 11-67 (130)
168 1pgv_A TMD-1, tropomodulin TMD 92.5 0.11 3.6E-06 46.0 4.3 111 209-325 37-167 (197)
169 2qen_A Walker-type ATPase; unk 78.0 4.3 0.00015 39.2 7.2 122 18-164 226-348 (350)
170 2fna_A Conserved hypothetical 67.3 11 0.00036 36.5 7.2 118 21-163 233-355 (357)
171 1w5s_A Origin recognition comp 49.7 73 0.0025 31.1 10.0 115 17-144 239-372 (412)
172 1hqc_A RUVB; extended AAA-ATPa 41.1 6.3 0.00021 37.7 0.3 109 18-142 191-324 (324)
173 2vda_B Maltoporin; sugar trans 23.2 54 0.0019 17.3 1.9 19 26-44 7-25 (28)
No 1
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=1.6e-29 Score=275.15 Aligned_cols=349 Identities=16% Similarity=0.104 Sum_probs=212.8
Q ss_pred CceeEEEEEeCCCC-CccccccCCCCeeEEEeeccch-------------------------------------------
Q 007330 190 EKFRHSMLVLGRRA-SFPVSIFKAKKLRSLLIHSEFE------------------------------------------- 225 (607)
Q Consensus 190 ~~~r~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~------------------------------------------- 225 (607)
.+|+.+.+.++.+. .++..+..+++|++|++++|..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 56888888887765 4578888999999999988731
Q ss_pred ---------------------------------hhhhhhhhhhccCCceeEEEecCccccccccccc-------------
Q 007330 226 ---------------------------------VSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYA------------- 259 (607)
Q Consensus 226 ---------------------------------~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~------------- 259 (607)
.... ++..+.++++|++|+|+ ++.+..
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls------~n~l~~~~~~~~~~~~~~~ 233 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMG------NSPFVAENICEAWENENSE 233 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEE------SCCCCGGGBSSSCSCTTSH
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECc------CCccccccccccccccccc
Confidence 0112 45568889999999999 667766
Q ss_pred -----cccccc--CcccccEEecCCCC-cccCchhhhcCCcccEeecCCCCCcc--ccccccccc------cCccccccc
Q 007330 260 -----IPKEKE--KLVHLRYLKLSLLM-REELPDIVCELFNLQTLEVEHCPRLK--RLPQGIGKL------VNLRHLIYY 323 (607)
Q Consensus 260 -----lp~~~~--~l~~L~~L~L~~~~-i~~lp~~i~~L~~L~~L~L~~~~~l~--~lp~~i~~l------~~L~~L~~~ 323 (607)
+|..++ ++++|++|++++|. ...+|..++++++|++|++++|..+. .+|..++.+ ++|++|+++
T Consensus 234 ~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~ 313 (636)
T 4eco_A 234 YAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIG 313 (636)
T ss_dssp HHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECC
T ss_pred hhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECC
Confidence 888888 99999999999988 67788889999999999999987344 588888877 899999988
Q ss_pred ccccccCcC--CCCCCCCCCccCcEEecCCccCCCcccccccccccccCceEEEeccCCCCCHhHHHHHHhcCCCC-Ccc
Q 007330 324 YSNLDYMPK--GFERLTCLRTLTEFVVSGGKYSGKACNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAELEKKRN-VVD 400 (607)
Q Consensus 324 ~~~l~~lp~--~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~-L~~ 400 (607)
.|.+..+|. .++.+++|+.|. ++++.+.+....+..+++|+ .+.+.+..- . .....+..+++ |+.
T Consensus 314 ~n~l~~ip~~~~l~~l~~L~~L~---L~~N~l~g~ip~~~~l~~L~----~L~L~~N~l-~----~lp~~l~~l~~~L~~ 381 (636)
T 4eco_A 314 YNNLKTFPVETSLQKMKKLGMLE---CLYNQLEGKLPAFGSEIKLA----SLNLAYNQI-T----EIPANFCGFTEQVEN 381 (636)
T ss_dssp SSCCSSCCCHHHHTTCTTCCEEE---CCSCCCEEECCCCEEEEEES----EEECCSSEE-E----ECCTTSEEECTTCCE
T ss_pred CCcCCccCchhhhccCCCCCEEe---CcCCcCccchhhhCCCCCCC----EEECCCCcc-c----cccHhhhhhcccCcE
Confidence 888888888 788888777766 66666552222334444443 444333210 0 11122445555 666
Q ss_pred eEEEecCCCCCch------------------hcHHHHhhcCC-------CCCCcceEEEeecCCCCCCChhhh-cCCCcc
Q 007330 401 LGLWFDKDEEGEE------------------ADHEEIIEALK-------PHSNLVALDILGFKGKITFPKWIM-SLNNLK 454 (607)
Q Consensus 401 L~l~~~~~~~~~~------------------~~~~~~~~~l~-------~~~~L~~L~l~~~~~~~~lp~~l~-~l~~L~ 454 (607)
|+++.|....... ...+..+..+. ..++|+.|++++|.+.. +|..+. .+++|+
T Consensus 382 L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~~~l~~L~ 460 (636)
T 4eco_A 382 LSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK-FPKELFSTGSPLS 460 (636)
T ss_dssp EECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCS-CCTHHHHTTCCCS
T ss_pred EEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCc-CCHHHHccCCCCC
Confidence 6666665421000 00111222222 33455555555555543 444332 355555
Q ss_pred EEEEecCCCCCcCCCCC--------CCCCCCeeEecCCcCeeeCccccCCCCCCccCCCccceeeecccccccccccccc
Q 007330 455 SLHLRSCEKCEILSPLG--------KLPSLETLYIAGMSGKRVGDEFFGIGSDCNIAFPKLKFLRVVDMFEWEEWGFGIT 526 (607)
Q Consensus 455 ~L~L~~~~~~~~~~~l~--------~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 526 (607)
.|+|++|.....+.... .+++|++|++++|.++.++..+.. ..+++|+.|+++++ .+..++..
T Consensus 461 ~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~------~~l~~L~~L~Ls~N-~l~~ip~~-- 531 (636)
T 4eco_A 461 SINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRA------TTLPYLVGIDLSYN-SFSKFPTQ-- 531 (636)
T ss_dssp EEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGST------TTCTTCCEEECCSS-CCSSCCCG--
T ss_pred EEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhh------ccCCCcCEEECCCC-CCCCcChh--
Confidence 55555554332221111 122555555555554444433321 14556666666655 33333333
Q ss_pred ccCcccccccCCccceeeeec------ccCccccCCCCCCCCCcCeEEEecCcc
Q 007330 527 RSNVKEDVMVMPCLNYLDIQF------CFKLKALPGYLLEITALEKLEILCCPI 574 (607)
Q Consensus 527 ~~~~~~~~~~~~~L~~L~l~~------c~~l~~lp~~~~~l~~L~~L~l~~c~~ 574 (607)
+..+++|++|++++ |.....+|..+..+++|++|++++|.-
T Consensus 532 -------~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 532 -------PLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp -------GGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred -------hhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 56677777777743 333455676677777777777777754
No 2
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=3.8e-28 Score=268.87 Aligned_cols=341 Identities=16% Similarity=0.161 Sum_probs=252.4
Q ss_pred cCceeEEEEEeCCCCC------------------cccccc--CCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecC
Q 007330 189 LEKFRHSMLVLGRRAS------------------FPVSIF--KAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITG 248 (607)
Q Consensus 189 ~~~~r~l~l~~~~~~~------------------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~ 248 (607)
..+++.|.+.++.+.. +|..+. ++++|+.|++++|. ....++..+.++++|++|+++
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~--l~~~iP~~l~~L~~L~~L~Ls- 523 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP--NMTQLPDFLYDLPELQSLNIA- 523 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCT--TCCSCCGGGGGCSSCCEEECT-
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCC--CCccChHHHhCCCCCCEEECc-
Confidence 5689999999998887 788877 99999999999986 334456778999999999999
Q ss_pred cccccccc-cc--cccccccCcc-------cccEEecCCCCcccCch--hhhcCCcccEeecCCCCCccccccccccccC
Q 007330 249 KVSWGQNS-IY--AIPKEKEKLV-------HLRYLKLSLLMREELPD--IVCELFNLQTLEVEHCPRLKRLPQGIGKLVN 316 (607)
Q Consensus 249 ~~~~~~~~-l~--~lp~~~~~l~-------~L~~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~ 316 (607)
++. +. .+|..++.+. +|++|++++|.+..+|. .++++++|++|+|++|. +..+| .++.+++
T Consensus 524 -----~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~L~~ 596 (876)
T 4ecn_A 524 -----CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE-AFGTNVK 596 (876)
T ss_dssp -----TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-CCCTTSE
T ss_pred -----CCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-cccch-hhcCCCc
Confidence 665 65 3777676665 99999999999999999 89999999999999998 77999 8999999
Q ss_pred cccccccccccccCcCCCCCCCC-CCccCcEEecCCccCCCcccccccccccccCceEEEeccCCCCCHhHHHHHHhc--
Q 007330 317 LRHLIYYYSNLDYMPKGFERLTC-LRTLTEFVVSGGKYSGKACNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAELE-- 393 (607)
Q Consensus 317 L~~L~~~~~~l~~lp~~i~~l~~-L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~-- 393 (607)
|++|+++.|.+..+|..+..+++ |+.|. ++++.+...+..+..+.. ..|+ .+.+.+..-...... ....+.
T Consensus 597 L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~---Ls~N~L~~lp~~~~~~~~-~~L~-~L~Ls~N~l~g~ip~-l~~~l~~~ 670 (876)
T 4ecn_A 597 LTDLKLDYNQIEEIPEDFCAFTDQVEGLG---FSHNKLKYIPNIFNAKSV-YVMG-SVDFSYNKIGSEGRN-ISCSMDDY 670 (876)
T ss_dssp ESEEECCSSCCSCCCTTSCEECTTCCEEE---CCSSCCCSCCSCCCTTCS-SCEE-EEECCSSCTTTTSSS-CSSCTTTC
T ss_pred ceEEECcCCccccchHHHhhccccCCEEE---CcCCCCCcCchhhhcccc-CCCC-EEECcCCcCCCcccc-chhhhccc
Confidence 99999999999999988888877 77776 777776654443333322 1122 455544321111000 000111
Q ss_pred CCCCCcceEEEecCCCCCchhcHHHHhhcC-CCCCCcceEEEeecCCCCCCChhhhcC--------CCccEEEEecCCCC
Q 007330 394 KKRNVVDLGLWFDKDEEGEEADHEEIIEAL-KPHSNLVALDILGFKGKITFPKWIMSL--------NNLKSLHLRSCEKC 464 (607)
Q Consensus 394 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~lp~~l~~l--------~~L~~L~L~~~~~~ 464 (607)
..++|+.|+++.|.... ++..+ ..+++|+.|++++|.+.. +|.++... ++|+.|+|++|...
T Consensus 671 ~~~~L~~L~Ls~N~L~~--------lp~~~~~~l~~L~~L~Ls~N~L~~-ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~ 741 (876)
T 4ecn_A 671 KGINASTVTLSYNEIQK--------FPTELFATGSPISTIILSNNLMTS-IPENSLKPKDGNYKNTYLLTTIDLRFNKLT 741 (876)
T ss_dssp CCCCEEEEECCSSCCCS--------CCHHHHHTTCCCSEEECCSCCCSC-CCTTSSSCTTSCCTTGGGCCEEECCSSCCC
T ss_pred cCCCcCEEEccCCcCCc--------cCHHHHccCCCCCEEECCCCcCCc-cChHHhccccccccccCCccEEECCCCCCc
Confidence 33588899998887632 22222 357889999999988885 88765532 38999999998655
Q ss_pred CcCCCCC--CCCCCCeeEecCCcCeeeCccccCCCCCCccCCCccceeeecccc------ccccccccccccCccccccc
Q 007330 465 EILSPLG--KLPSLETLYIAGMSGKRVGDEFFGIGSDCNIAFPKLKFLRVVDMF------EWEEWGFGITRSNVKEDVMV 536 (607)
Q Consensus 465 ~~~~~l~--~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~------~l~~~~~~~~~~~~~~~~~~ 536 (607)
..+..+. .+++|+.|+|++|.+..+|..+ ..+++|+.|++++++ -...+ |..+..
T Consensus 742 ~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l--------~~L~~L~~L~Ls~N~~ls~N~l~~~i---------p~~l~~ 804 (876)
T 4ecn_A 742 SLSDDFRATTLPYLSNMDVSYNCFSSFPTQP--------LNSSQLKAFGIRHQRDAEGNRILRQW---------PTGITT 804 (876)
T ss_dssp CCCGGGSTTTCTTCCEEECCSSCCSSCCCGG--------GGCTTCCEEECCCCBCTTCCBCCCCC---------CTTGGG
T ss_pred cchHHhhhccCCCcCEEEeCCCCCCccchhh--------hcCCCCCEEECCCCCCcccccccccC---------hHHHhc
Confidence 4444555 8899999999998876666544 368899999998743 22233 334778
Q ss_pred CCccceeeeecccCccccCCCCCCCCCcCeEEEecCcc
Q 007330 537 MPCLNYLDIQFCFKLKALPGYLLEITALEKLEILCCPI 574 (607)
Q Consensus 537 ~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 574 (607)
+++|+.|++++|. ++.+|..+. ++|+.|++++|+-
T Consensus 805 L~~L~~L~Ls~N~-L~~Ip~~l~--~~L~~LdLs~N~l 839 (876)
T 4ecn_A 805 CPSLIQLQIGSND-IRKVDEKLT--PQLYILDIADNPN 839 (876)
T ss_dssp CSSCCEEECCSSC-CCBCCSCCC--SSSCEEECCSCTT
T ss_pred CCCCCEEECCCCC-CCccCHhhc--CCCCEEECCCCCC
Confidence 9999999999975 588997754 6999999999874
No 3
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=2.6e-27 Score=257.80 Aligned_cols=376 Identities=18% Similarity=0.113 Sum_probs=242.4
Q ss_pred cCceeEEEEEeCCCCCccc-cccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccccc-cccccC
Q 007330 189 LEKFRHSMLVLGRRASFPV-SIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAI-PKEKEK 266 (607)
Q Consensus 189 ~~~~r~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~l-p~~~~~ 266 (607)
+..++++.++++.+..++. .+.++++|++|++++|. .....+..|..+++|++|+++ ++.+..+ |..+++
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~~i~~~~~~~l~~L~~L~Ls------~n~l~~~~p~~~~~ 102 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE--IETIEDKAWHGLHHLSNLILT------GNPIQSFSPGSFSG 102 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC--CCEECTTTTTTCTTCCEEECT------TCCCCCCCTTSSTT
T ss_pred CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCc--ccccCHHHhhchhhcCEeECC------CCcccccChhhcCC
Confidence 5789999999998877654 78899999999999986 445556678999999999999 8888887 788999
Q ss_pred cccccEEecCCCCcccCc-hhhhcCCcccEeecCCCCCcc--ccccccccccCcccccccccccccCcC-CCCCCCCCCc
Q 007330 267 LVHLRYLKLSLLMREELP-DIVCELFNLQTLEVEHCPRLK--RLPQGIGKLVNLRHLIYYYSNLDYMPK-GFERLTCLRT 342 (607)
Q Consensus 267 l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~--~lp~~i~~l~~L~~L~~~~~~l~~lp~-~i~~l~~L~~ 342 (607)
+++|++|++++|.+..+| ..++++++|++|++++|. +. .+|..++++++|++|+++.|.+..++. .++.+++|+.
T Consensus 103 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 181 (606)
T 3vq2_A 103 LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF-IHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQ 181 (606)
T ss_dssp CTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSC-CCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTT
T ss_pred cccCCEEEccCCccccccccccCCCCCCCEEeCCCCc-ccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhcccc
Confidence 999999999999998887 569999999999999998 55 589999999999999999999887653 4656665553
Q ss_pred -cCcEEecCCccCCCcccccccccccccCceEEEeccCCCCCHhHHHHHH------------------------------
Q 007330 343 -LTEFVVSGGKYSGKACNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAE------------------------------ 391 (607)
Q Consensus 343 -L~~~~~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~------------------------------ 391 (607)
+..++++.+.+...+.......+|+ .+.+.+... ........
T Consensus 182 ~l~~L~l~~n~l~~~~~~~~~~~~L~----~L~L~~n~~---~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~ 254 (606)
T 3vq2_A 182 VNLSLDMSLNPIDFIQDQAFQGIKLH----ELTLRGNFN---SSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSI 254 (606)
T ss_dssp CCCEEECTTCCCCEECTTTTTTCEEE----EEEEESCCS---CHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGG
T ss_pred ccceeeccCCCcceeCcccccCceee----eeeccCCcc---chhHHHHHhccccccccccccccccccCCcccccChHH
Confidence 3345566666544433332222333 333333211 01112222
Q ss_pred --------------------------hcCCCCCcceEEEecCCCCCchhcHHHHhhcCCCCCCcceEEEeecCCCCCCCh
Q 007330 392 --------------------------LEKKRNVVDLGLWFDKDEEGEEADHEEIIEALKPHSNLVALDILGFKGKITFPK 445 (607)
Q Consensus 392 --------------------------l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~ 445 (607)
+..+++|+.|+++.+... .++ .+..+++|+.|++++|.... +|.
T Consensus 255 ~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--------~l~-~l~~~~~L~~L~l~~n~l~~-lp~ 324 (606)
T 3vq2_A 255 MEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK--------YLE-DVPKHFKWQSLSIIRCQLKQ-FPT 324 (606)
T ss_dssp GTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCC--------CCC-CCCTTCCCSEEEEESCCCSS-CCC
T ss_pred hhhhhhccHhheeccccccccccccccccCCCCCEEEecCccch--------hhh-hccccccCCEEEcccccCcc-ccc
Confidence 334455555555555431 112 45566677777777777743 664
Q ss_pred hhhcCCCccEEEEecCCCCCcCCCCCCCCCCCeeEecCCcCeeeC--ccccCCCCCCccCCCccceeeeccccccccccc
Q 007330 446 WIMSLNNLKSLHLRSCEKCEILSPLGKLPSLETLYIAGMSGKRVG--DEFFGIGSDCNIAFPKLKFLRVVDMFEWEEWGF 523 (607)
Q Consensus 446 ~l~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~--~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 523 (607)
+ .+++|+.|++++|...... .++.+++|++|++++|.++.++ ...+ ..+++|++|+++++. +..++.
T Consensus 325 ~--~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~-------~~~~~L~~L~L~~n~-l~~~~~ 393 (606)
T 3vq2_A 325 L--DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNALSFSGCCSYSD-------LGTNSLRHLDLSFNG-AIIMSA 393 (606)
T ss_dssp C--CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSCEEEEEECCHHH-------HCCSCCCEEECCSCS-EEEECC
T ss_pred C--CCCccceeeccCCcCccch-hhccCCCCCEEECcCCccCCCcchhhhh-------ccCCcccEeECCCCc-cccchh
Confidence 3 6777777777777443333 4556777777777777654442 1111 245555555555542 222221
Q ss_pred cc--------------cccC-cc-cccccCCccceeeeecccCccccCCCCCCCCCcCeEEEecCcchhHhhhcCCCCCC
Q 007330 524 GI--------------TRSN-VK-EDVMVMPCLNYLDIQFCFKLKALPGYLLEITALEKLEILCCPILEQRYRKGTGEDW 587 (607)
Q Consensus 524 ~~--------------~~~~-~~-~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 587 (607)
.+ .+.. .+ ..+..+++|++|++++|......|..+..+++|+.|++++|.--... ....+
T Consensus 394 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~ 469 (606)
T 3vq2_A 394 NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNT----LSNVF 469 (606)
T ss_dssp CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE----ECSCC
T ss_pred hccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcc----hHHhh
Confidence 10 0000 11 23556777777777776544445666777777777777777532211 12234
Q ss_pred CcccccCeeEeCceEeec
Q 007330 588 AKVAHVPTITINRQYVQG 605 (607)
Q Consensus 588 ~~~~~ip~~~~~~~~~~~ 605 (607)
....++..+.+.++.+.+
T Consensus 470 ~~l~~L~~L~Ls~n~l~~ 487 (606)
T 3vq2_A 470 ANTTNLTFLDLSKCQLEQ 487 (606)
T ss_dssp TTCTTCCEEECTTSCCCE
T ss_pred ccCCCCCEEECCCCcCCc
Confidence 556667777777766544
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=1.4e-28 Score=274.06 Aligned_cols=383 Identities=19% Similarity=0.167 Sum_probs=252.8
Q ss_pred cCceeEEEEEeCCCC-CccccccCC-CCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccc-ccccc-c
Q 007330 189 LEKFRHSMLVLGRRA-SFPVSIFKA-KKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIY-AIPKE-K 264 (607)
Q Consensus 189 ~~~~r~l~l~~~~~~-~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~-~lp~~-~ 264 (607)
..+++++.+.++.+. .++..+... ++|+.|++++|. ....++..+..+++|++|+++ ++.+. .+|.. +
T Consensus 268 l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~--l~~~~p~~~~~l~~L~~L~L~------~n~l~~~ip~~~l 339 (768)
T 3rgz_A 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH--FYGAVPPFFGSCSLLESLALS------SNNFSGELPMDTL 339 (768)
T ss_dssp CTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSE--EEECCCGGGGGCTTCCEEECC------SSEEEEECCHHHH
T ss_pred cCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCc--CCCccchHHhcCCCccEEECC------CCcccCcCCHHHH
Confidence 567889999888775 556666554 899999999886 443456668899999999999 77776 67765 8
Q ss_pred cCcccccEEecCCCCcc-cCchhhhcCC-cccEeecCCCCCcccccccccc--ccCcccccccccccc-cCcCCCCCCCC
Q 007330 265 EKLVHLRYLKLSLLMRE-ELPDIVCELF-NLQTLEVEHCPRLKRLPQGIGK--LVNLRHLIYYYSNLD-YMPKGFERLTC 339 (607)
Q Consensus 265 ~~l~~L~~L~L~~~~i~-~lp~~i~~L~-~L~~L~L~~~~~l~~lp~~i~~--l~~L~~L~~~~~~l~-~lp~~i~~l~~ 339 (607)
+.+++|++|++++|.+. .+|..+.++. +|++|++++|.....+|..+.. +++|++|+++.|.+. .+|..++.+++
T Consensus 340 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~ 419 (768)
T 3rgz_A 340 LKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSE 419 (768)
T ss_dssp TTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTT
T ss_pred hcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCC
Confidence 88999999999999865 7888888887 8999999988755567777766 788888888888776 66777777777
Q ss_pred CCccCcEEecCCccCCC-cccccccccccccCceEEEeccCCCCCHhHHHHHHhcCCCCCcceEEEecCCCCCchhcHHH
Q 007330 340 LRTLTEFVVSGGKYSGK-ACNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAELEKKRNVVDLGLWFDKDEEGEEADHEE 418 (607)
Q Consensus 340 L~~L~~~~~~~~~~~~~-~~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 418 (607)
|+.|. ++++.+.+. +..+..+++|+ .+.+.+..-... ....+..+++|+.|+++.|.... .
T Consensus 420 L~~L~---Ls~N~l~~~~p~~l~~l~~L~----~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~-------~ 481 (768)
T 3rgz_A 420 LVSLH---LSFNYLSGTIPSSLGSLSKLR----DLKLWLNMLEGE----IPQELMYVKTLETLILDFNDLTG-------E 481 (768)
T ss_dssp CCEEE---CCSSEEESCCCGGGGGCTTCC----EEECCSSCCCSC----CCGGGGGCTTCCEEECCSSCCCS-------C
T ss_pred CCEEE---CcCCcccCcccHHHhcCCCCC----EEECCCCcccCc----CCHHHcCCCCceEEEecCCcccC-------c
Confidence 66665 666665432 33444444444 555555432211 12345677888888888876532 3
Q ss_pred HhhcCCCCCCcceEEEeecCCCCCCChhhhcCCCccEEEEecCCCCCcC-CCCCCCCCCCeeEecCCcCe-eeCccccCC
Q 007330 419 IIEALKPHSNLVALDILGFKGKITFPKWIMSLNNLKSLHLRSCEKCEIL-SPLGKLPSLETLYIAGMSGK-RVGDEFFGI 496 (607)
Q Consensus 419 ~~~~l~~~~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~-~~l~~l~~L~~L~L~~~~~~-~~~~~~~~~ 496 (607)
++..+..+++|+.|++++|.+.+.+|.+++.+++|+.|+|++|.....+ ..++.+++|+.|++++|.+. .+|..++..
T Consensus 482 ~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~ 561 (768)
T 3rgz_A 482 IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ 561 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTT
T ss_pred CCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcc
Confidence 4556677788888888888888668888888888888888888655433 34777888888888888733 455433210
Q ss_pred C--------------------------------------------------------------CCCccCCCccceeeecc
Q 007330 497 G--------------------------------------------------------------SDCNIAFPKLKFLRVVD 514 (607)
Q Consensus 497 ~--------------------------------------------------------------~~~~~~~~~L~~L~l~~ 514 (607)
. +.....+++|+.|++++
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~ 641 (768)
T 3rgz_A 562 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY 641 (768)
T ss_dssp TTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCS
T ss_pred cchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcC
Confidence 0 00112346677777776
Q ss_pred cccccccccccc--------------c-cCcccccccCCccceeeeecccCccccCCCCCCCCCcCeEEEecCcch----
Q 007330 515 MFEWEEWGFGIT--------------R-SNVKEDVMVMPCLNYLDIQFCFKLKALPGYLLEITALEKLEILCCPIL---- 575 (607)
Q Consensus 515 ~~~l~~~~~~~~--------------~-~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l---- 575 (607)
+.-...++..+. + ...|..++.+++|+.|++++|.-...+|..+..+++|+.|++++|+--
T Consensus 642 N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP 721 (768)
T 3rgz_A 642 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721 (768)
T ss_dssp SCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECC
T ss_pred CcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCC
Confidence 643334442210 0 234555778888888888887655578888888888888888766211
Q ss_pred -------------------h----HhhhcCCCCCCCcccccCeeE
Q 007330 576 -------------------E----QRYRKGTGEDWAKVAHVPTIT 597 (607)
Q Consensus 576 -------------------~----~~~~~~~~~~~~~~~~ip~~~ 597 (607)
. ..|....+++|++++|+|.+.
T Consensus 722 ~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 722 EMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp SSSSGGGSCGGGGCSCTEEESTTSCCCCSCC--------------
T ss_pred CchhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCccccC
Confidence 0 145667777888888888654
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=2.6e-28 Score=271.90 Aligned_cols=377 Identities=16% Similarity=0.139 Sum_probs=273.1
Q ss_pred cCceeEEEEEeCCCCCccccccCCCCeeEEEeeccchhhhhhhhhhhcc-CCceeEEEecCcccccccccc-cccccccC
Q 007330 189 LEKFRHSMLVLGRRASFPVSIFKAKKLRSLLIHSEFEVSFHVLQGLFDY-LTCLRALKITGKVSWGQNSIY-AIPKEKEK 266 (607)
Q Consensus 189 ~~~~r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-l~~L~~L~L~~~~~~~~~~l~-~lp~~~~~ 266 (607)
..+++.+.+.++.+....+.. .+++|++|++++|. ....++..+.. +++|++|+++ ++.+. .+|..++.
T Consensus 246 l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~--l~~~ip~~~~~~~~~L~~L~Ls------~n~l~~~~p~~~~~ 316 (768)
T 3rgz_A 246 CTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENK--FTGEIPDFLSGACDTLTGLDLS------GNHFYGAVPPFFGS 316 (768)
T ss_dssp CSSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSE--EEESCCCCSCTTCTTCSEEECC------SSEEEECCCGGGGG
T ss_pred CCCCCEEECCCCcccCccCcc-ccCCCCEEECcCCc--cCCccCHHHHhhcCcCCEEECc------CCcCCCccchHHhc
Confidence 567899999998876433333 89999999999986 33223443444 5999999999 77776 56889999
Q ss_pred cccccEEecCCCCcc-cCchh-hhcCCcccEeecCCCCCcccccccccccc-Ccccccccccccc-cCcCCCCC--CCCC
Q 007330 267 LVHLRYLKLSLLMRE-ELPDI-VCELFNLQTLEVEHCPRLKRLPQGIGKLV-NLRHLIYYYSNLD-YMPKGFER--LTCL 340 (607)
Q Consensus 267 l~~L~~L~L~~~~i~-~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~l~-~L~~L~~~~~~l~-~lp~~i~~--l~~L 340 (607)
+++|++|++++|.+. .+|.. ++++++|++|++++|.....+|..+..++ +|++|+++.|.+. .+|..+.. +++|
T Consensus 317 l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L 396 (768)
T 3rgz_A 317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396 (768)
T ss_dssp CTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCC
T ss_pred CCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCc
Confidence 999999999999976 89977 99999999999999984458999999998 9999999998886 46666655 5666
Q ss_pred CccCcEEecCCccCC-CcccccccccccccCceEEEeccCCCCCHhHHHHHHhcCCCCCcceEEEecCCCCCchhcHHHH
Q 007330 341 RTLTEFVVSGGKYSG-KACNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAELEKKRNVVDLGLWFDKDEEGEEADHEEI 419 (607)
Q Consensus 341 ~~L~~~~~~~~~~~~-~~~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 419 (607)
+.|. ++++.+.+ .+..+..+++|+ .+.+.+..-. ......+..+++|+.|+++.|... +.+
T Consensus 397 ~~L~---L~~n~l~~~~p~~l~~l~~L~----~L~Ls~N~l~----~~~p~~l~~l~~L~~L~L~~n~l~-------~~~ 458 (768)
T 3rgz_A 397 QELY---LQNNGFTGKIPPTLSNCSELV----SLHLSFNYLS----GTIPSSLGSLSKLRDLKLWLNMLE-------GEI 458 (768)
T ss_dssp CEEE---CCSSEEEEECCGGGGGCTTCC----EEECCSSEEE----SCCCGGGGGCTTCCEEECCSSCCC-------SCC
T ss_pred cEEE---CCCCccccccCHHHhcCCCCC----EEECcCCccc----CcccHHHhcCCCCCEEECCCCccc-------CcC
Confidence 6655 77776542 233455555555 6665543211 112345778899999999998763 245
Q ss_pred hhcCCCCCCcceEEEeecCCCCCCChhhhcCCCccEEEEecCCCCCcC-CCCCCCCCCCeeEecCCcCe-eeCccccCCC
Q 007330 420 IEALKPHSNLVALDILGFKGKITFPKWIMSLNNLKSLHLRSCEKCEIL-SPLGKLPSLETLYIAGMSGK-RVGDEFFGIG 497 (607)
Q Consensus 420 ~~~l~~~~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~-~~l~~l~~L~~L~L~~~~~~-~~~~~~~~~~ 497 (607)
+..+..+++|+.|++++|.+.+.+|.++..+++|+.|+|++|.....+ ..++.+++|++|+|++|.+. .+|..+
T Consensus 459 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l---- 534 (768)
T 3rgz_A 459 PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL---- 534 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGG----
T ss_pred CHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHH----
Confidence 667778899999999999999879999999999999999999866444 45889999999999999965 555444
Q ss_pred CCCccCCCccceeeeccccccccccccc----------------------------------------------------
Q 007330 498 SDCNIAFPKLKFLRVVDMFEWEEWGFGI---------------------------------------------------- 525 (607)
Q Consensus 498 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~---------------------------------------------------- 525 (607)
..+++|+.|++++++-...++..+
T Consensus 535 ----~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 610 (768)
T 3rgz_A 535 ----GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR 610 (768)
T ss_dssp ----GGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGT
T ss_pred ----cCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccc
Confidence 378999999999875433332110
Q ss_pred ---------------------------c-----c-cCcccccccCCccceeeeecccCccccCCCCCCCCCcCeEEEecC
Q 007330 526 ---------------------------T-----R-SNVKEDVMVMPCLNYLDIQFCFKLKALPGYLLEITALEKLEILCC 572 (607)
Q Consensus 526 ---------------------------~-----~-~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c 572 (607)
. + ...|..++.+++|+.|++++|.-...+|..+..+++|+.|++++|
T Consensus 611 ~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N 690 (768)
T 3rgz_A 611 NPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN 690 (768)
T ss_dssp CCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred cccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCC
Confidence 0 0 123455666666777777765444466666666777777777766
Q ss_pred cchhHhhhcCCCCCCCcccccCeeEeCceEeec
Q 007330 573 PILEQRYRKGTGEDWAKVAHVPTITINRQYVQG 605 (607)
Q Consensus 573 ~~l~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~ 605 (607)
.-- ....+.+..+..+..+.+.+|++.|
T Consensus 691 ~l~-----g~ip~~l~~l~~L~~L~ls~N~l~g 718 (768)
T 3rgz_A 691 KLD-----GRIPQAMSALTMLTEIDLSNNNLSG 718 (768)
T ss_dssp CCE-----ECCCGGGGGCCCCSEEECCSSEEEE
T ss_pred ccc-----CcCChHHhCCCCCCEEECcCCcccc
Confidence 421 1222334556666677777776655
No 6
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=5.8e-28 Score=267.34 Aligned_cols=329 Identities=16% Similarity=0.133 Sum_probs=204.6
Q ss_pred hhhhhccCCceeEEEecCccccccccccc------------------cccccc--CcccccEEecCCCC-cccCchhhhc
Q 007330 231 LQGLFDYLTCLRALKITGKVSWGQNSIYA------------------IPKEKE--KLVHLRYLKLSLLM-REELPDIVCE 289 (607)
Q Consensus 231 ~~~~~~~l~~L~~L~L~~~~~~~~~~l~~------------------lp~~~~--~l~~L~~L~L~~~~-i~~lp~~i~~ 289 (607)
+|..+.++++|++|+|+ ++.+.. +|..++ ++++|++|+|++|. ...+|..+++
T Consensus 440 IP~~l~~L~~L~~L~Ls------~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~ 513 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFA------NSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513 (876)
T ss_dssp ECGGGGGCTTCCEEEEE------SCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred hhHHHhcCCCCCEEECc------CCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence 34557788888888888 666665 777777 88888888888877 6677877888
Q ss_pred CCcccEeecCCCCCcc--cccccccccc-------CcccccccccccccCcC--CCCCCCCCCccCcEEecCCccCCCcc
Q 007330 290 LFNLQTLEVEHCPRLK--RLPQGIGKLV-------NLRHLIYYYSNLDYMPK--GFERLTCLRTLTEFVVSGGKYSGKAC 358 (607)
Q Consensus 290 L~~L~~L~L~~~~~l~--~lp~~i~~l~-------~L~~L~~~~~~l~~lp~--~i~~l~~L~~L~~~~~~~~~~~~~~~ 358 (607)
+++|++|+|++|..+. .+|..++.++ +|++|+++.|.+..+|. .++.+++|+.|. ++++.+...+
T Consensus 514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~---Ls~N~l~~lp- 589 (876)
T 4ecn_A 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLD---CVHNKVRHLE- 589 (876)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEE---CTTSCCCBCC-
T ss_pred CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEE---CCCCCcccch-
Confidence 8888888888876344 4777666665 78888877777777777 677766666655 6666544222
Q ss_pred cccccccccccCceEEEeccCCCCCHhHHHHHHhcCCCC-CcceEEEecCCCCCchh------------------cHH--
Q 007330 359 NIEGLRHLNHLGGVFRITGLGNVTDVDEAENAELEKKRN-VVDLGLWFDKDEEGEEA------------------DHE-- 417 (607)
Q Consensus 359 ~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~------------------~~~-- 417 (607)
.+..+++|+ .+.+.+..-. .+ ...+..+++ |+.|+++.|........ ..+
T Consensus 590 ~~~~L~~L~----~L~Ls~N~l~-~l----p~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~i 660 (876)
T 4ecn_A 590 AFGTNVKLT----DLKLDYNQIE-EI----PEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEG 660 (876)
T ss_dssp CCCTTSEES----EEECCSSCCS-CC----CTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTS
T ss_pred hhcCCCcce----EEECcCCccc-cc----hHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCcc
Confidence 333333333 4444432211 11 122444555 66666665543210000 000
Q ss_pred -HHhhcCC--CCCCcceEEEeecCCCCCCChhhh-cCCCccEEEEecCCCCCcCCCCC--------CCCCCCeeEecCCc
Q 007330 418 -EIIEALK--PHSNLVALDILGFKGKITFPKWIM-SLNNLKSLHLRSCEKCEILSPLG--------KLPSLETLYIAGMS 485 (607)
Q Consensus 418 -~~~~~l~--~~~~L~~L~l~~~~~~~~lp~~l~-~l~~L~~L~L~~~~~~~~~~~l~--------~l~~L~~L~L~~~~ 485 (607)
.++..+. ..++|+.|++++|.+.. +|.++. .+++|+.|+|++|.....+..+. .+++|+.|+|++|.
T Consensus 661 p~l~~~l~~~~~~~L~~L~Ls~N~L~~-lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~ 739 (876)
T 4ecn_A 661 RNISCSMDDYKGINASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK 739 (876)
T ss_dssp SSCSSCTTTCCCCCEEEEECCSSCCCS-CCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSC
T ss_pred ccchhhhccccCCCcCEEEccCCcCCc-cCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCC
Confidence 0011111 23467777777777775 777665 67788888888875443333222 23478888888887
Q ss_pred CeeeCccccCCCCCCccCCCccceeeeccccccccccccccccCcccccccCCccceeeeec------ccCccccCCCCC
Q 007330 486 GKRVGDEFFGIGSDCNIAFPKLKFLRVVDMFEWEEWGFGITRSNVKEDVMVMPCLNYLDIQF------CFKLKALPGYLL 559 (607)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~------c~~l~~lp~~~~ 559 (607)
++.++..+.. ..+++|+.|+++++ .+..++.. +..+++|+.|++++ |.....+|..+.
T Consensus 740 L~~lp~~l~~------~~l~~L~~L~Ls~N-~L~~lp~~---------l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~ 803 (876)
T 4ecn_A 740 LTSLSDDFRA------TTLPYLSNMDVSYN-CFSSFPTQ---------PLNSSQLKAFGIRHQRDAEGNRILRQWPTGIT 803 (876)
T ss_dssp CCCCCGGGST------TTCTTCCEEECCSS-CCSSCCCG---------GGGCTTCCEEECCCCBCTTCCBCCCCCCTTGG
T ss_pred CccchHHhhh------ccCCCcCEEEeCCC-CCCccchh---------hhcCCCCCEEECCCCCCcccccccccChHHHh
Confidence 7666654431 15778888888876 44445544 67888899998876 444566788888
Q ss_pred CCCCcCeEEEecCcchhHhhhcCCCCCCCcccccCeeEeCceEe
Q 007330 560 EITALEKLEILCCPILEQRYRKGTGEDWAKVAHVPTITINRQYV 603 (607)
Q Consensus 560 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ip~~~~~~~~~ 603 (607)
.+++|+.|++++|.- .. +. ..+. ..+..+.+.+|.+
T Consensus 804 ~L~~L~~L~Ls~N~L-~~-Ip----~~l~--~~L~~LdLs~N~l 839 (876)
T 4ecn_A 804 TCPSLIQLQIGSNDI-RK-VD----EKLT--PQLYILDIADNPN 839 (876)
T ss_dssp GCSSCCEEECCSSCC-CB-CC----SCCC--SSSCEEECCSCTT
T ss_pred cCCCCCEEECCCCCC-Cc-cC----Hhhc--CCCCEEECCCCCC
Confidence 888999999988864 22 11 1121 3666777777654
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=2.6e-28 Score=265.72 Aligned_cols=336 Identities=16% Similarity=0.182 Sum_probs=262.5
Q ss_pred cCceeEEEEEeCCCCC------------------cccccc--CCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecC
Q 007330 189 LEKFRHSMLVLGRRAS------------------FPVSIF--KAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITG 248 (607)
Q Consensus 189 ~~~~r~l~l~~~~~~~------------------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~ 248 (607)
..+++.+.+.++.+.. +|..+. ++++|++|++++|. ....++..+.++++|++|+++
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~--l~~~~p~~l~~l~~L~~L~Ls- 281 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP--NLTKLPTFLKALPEMQLINVA- 281 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT--TCSSCCTTTTTCSSCCEEECT-
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc--CCccChHHHhcCCCCCEEECc-
Confidence 5689999999999887 888888 99999999999986 334456778999999999999
Q ss_pred cccccccc-cc--cccccccCc------ccccEEecCCCCcccCch--hhhcCCcccEeecCCCCCcc-ccccccccccC
Q 007330 249 KVSWGQNS-IY--AIPKEKEKL------VHLRYLKLSLLMREELPD--IVCELFNLQTLEVEHCPRLK-RLPQGIGKLVN 316 (607)
Q Consensus 249 ~~~~~~~~-l~--~lp~~~~~l------~~L~~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~~l~-~lp~~i~~l~~ 316 (607)
++. ++ .+|..++.+ ++|++|++++|.+..+|. .++++++|++|++++|. +. .+| .++.+++
T Consensus 282 -----~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~-l~g~ip-~~~~l~~ 354 (636)
T 4eco_A 282 -----CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQ-LEGKLP-AFGSEIK 354 (636)
T ss_dssp -----TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCC-CEEECC-CCEEEEE
T ss_pred -----CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCc-Cccchh-hhCCCCC
Confidence 666 66 488888776 999999999999999999 89999999999999998 55 899 9999999
Q ss_pred cccccccccccccCcCCCCCCCC-CCccCcEEecCCccCCCcccccccc--cccccCceEEEeccCCCCCHhHHHHHHhc
Q 007330 317 LRHLIYYYSNLDYMPKGFERLTC-LRTLTEFVVSGGKYSGKACNIEGLR--HLNHLGGVFRITGLGNVTDVDEAENAELE 393 (607)
Q Consensus 317 L~~L~~~~~~l~~lp~~i~~l~~-L~~L~~~~~~~~~~~~~~~~~~~l~--~L~~L~~~l~i~~~~~~~~~~~~~~~~l~ 393 (607)
|++|+++.|.+..+|..+..+++ |+.|. ++++.+...+..+..+. +|+ .+.+....-.. .....+.
T Consensus 355 L~~L~L~~N~l~~lp~~l~~l~~~L~~L~---Ls~N~l~~lp~~~~~~~l~~L~----~L~Ls~N~l~~----~~p~~l~ 423 (636)
T 4eco_A 355 LASLNLAYNQITEIPANFCGFTEQVENLS---FAHNKLKYIPNIFDAKSVSVMS----AIDFSYNEIGS----VDGKNFD 423 (636)
T ss_dssp ESEEECCSSEEEECCTTSEEECTTCCEEE---CCSSCCSSCCSCCCTTCSSCEE----EEECCSSCTTT----TTTCSSC
T ss_pred CCEEECCCCccccccHhhhhhcccCcEEE---ccCCcCcccchhhhhcccCccC----EEECcCCcCCC----cchhhhc
Confidence 99999999999999998888877 77776 78887665554433322 444 55555432211 1112233
Q ss_pred -------CCCCCcceEEEecCCCCCchhcHHHHhhc-CCCCCCcceEEEeecCCCCCCChhhhc--------CCCccEEE
Q 007330 394 -------KKRNVVDLGLWFDKDEEGEEADHEEIIEA-LKPHSNLVALDILGFKGKITFPKWIMS--------LNNLKSLH 457 (607)
Q Consensus 394 -------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~lp~~l~~--------l~~L~~L~ 457 (607)
.+.+|+.|+++.|.... ++.. +..+++|+.|++++|.+.. +|..+.. +++|+.|+
T Consensus 424 ~~~~~~~~~~~L~~L~Ls~N~l~~--------lp~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~~~~~~~~l~~L~~L~ 494 (636)
T 4eco_A 424 PLDPTPFKGINVSSINLSNNQISK--------FPKELFSTGSPLSSINLMGNMLTE-IPKNSLKDENENFKNTYLLTSID 494 (636)
T ss_dssp TTCSSCCCCCCEEEEECCSSCCCS--------CCTHHHHTTCCCSEEECCSSCCSB-CCSSSSEETTEECTTGGGCCEEE
T ss_pred ccccccccCCCCCEEECcCCccCc--------CCHHHHccCCCCCEEECCCCCCCC-cCHHHhccccccccccCCccEEE
Confidence 56799999999987632 2222 2357899999999999985 8876543 23999999
Q ss_pred EecCCCCCcCCCCC--CCCCCCeeEecCCcCeeeCccccCCCCCCccCCCccceeeecccc------ccccccccccccC
Q 007330 458 LRSCEKCEILSPLG--KLPSLETLYIAGMSGKRVGDEFFGIGSDCNIAFPKLKFLRVVDMF------EWEEWGFGITRSN 529 (607)
Q Consensus 458 L~~~~~~~~~~~l~--~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~------~l~~~~~~~~~~~ 529 (607)
|++|.....+..+. .+++|+.|+|++|.++.+|..+. .+++|+.|+++++. ....++.
T Consensus 495 Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--------~l~~L~~L~Ls~N~~ls~N~l~~~~p~------ 560 (636)
T 4eco_A 495 LRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPL--------NSSTLKGFGIRNQRDAQGNRTLREWPE------ 560 (636)
T ss_dssp CCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGG--------GCSSCCEEECCSCBCTTCCBCCCCCCT------
T ss_pred CcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhh--------cCCCCCEEECCCCcccccCcccccChH------
Confidence 99997665455565 89999999999999776766553 68999999997643 2333433
Q ss_pred cccccccCCccceeeeecccCccccCCCCCCCCCcCeEEEecCcc
Q 007330 530 VKEDVMVMPCLNYLDIQFCFKLKALPGYLLEITALEKLEILCCPI 574 (607)
Q Consensus 530 ~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 574 (607)
.+..+++|++|++++|. ++.+|..+. ++|+.|++++|+-
T Consensus 561 ---~l~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N~l 599 (636)
T 4eco_A 561 ---GITLCPSLTQLQIGSND-IRKVNEKIT--PNISVLDIKDNPN 599 (636)
T ss_dssp ---TGGGCSSCCEEECCSSC-CCBCCSCCC--TTCCEEECCSCTT
T ss_pred ---HHhcCCCCCEEECCCCc-CCccCHhHh--CcCCEEECcCCCC
Confidence 37889999999999975 699998765 8999999999964
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.94 E-value=7.3e-27 Score=254.28 Aligned_cols=385 Identities=11% Similarity=0.031 Sum_probs=245.4
Q ss_pred cCceeEEEEEeCCCCCc-cccccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccccc-cccccC
Q 007330 189 LEKFRHSMLVLGRRASF-PVSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAI-PKEKEK 266 (607)
Q Consensus 189 ~~~~r~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~l-p~~~~~ 266 (607)
+..++++.++++.+..+ +..+.++++|++|++++|. .....+..|..+++|++|+++ ++.+..+ |..++.
T Consensus 32 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~Ls------~n~l~~~~~~~~~~ 103 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ--IYWIHEDTFQSQHRLDTLVLT------ANPLIFMAETALSG 103 (606)
T ss_dssp CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCC--CCEECTTTTTTCTTCCEEECT------TCCCSEECTTTTSS
T ss_pred CCcCcEEEccCCccCcCChhHhccCccceEEECCCCc--cceeChhhccCccccCeeeCC------CCcccccChhhhcc
Confidence 56899999999998876 5578899999999999986 445556778999999999999 7788766 778999
Q ss_pred cccccEEecCCCCcccC-chhhhcCCcccEeecCCCCCccccc-cccccccCcccccccccccccCc-CCCCCCCCCCcc
Q 007330 267 LVHLRYLKLSLLMREEL-PDIVCELFNLQTLEVEHCPRLKRLP-QGIGKLVNLRHLIYYYSNLDYMP-KGFERLTCLRTL 343 (607)
Q Consensus 267 l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~~~~~~l~~lp-~~i~~l~~L~~L 343 (607)
+++|++|++++|.+..+ |..++++++|++|++++|. +..++ ..+..+++|++|+++.|.+..++ ..++.+++|+.+
T Consensus 104 l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l 182 (606)
T 3t6q_A 104 PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL 182 (606)
T ss_dssp CTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSE
T ss_pred cccccEeeccccCcccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCcccccChhhhhhhccccee
Confidence 99999999999999888 5668999999999999998 66552 34445999999999999988764 456777777744
Q ss_pred CcEEecCCccCCCcccccccccccc-------------------------------------------------cCceEE
Q 007330 344 TEFVVSGGKYSGKACNIEGLRHLNH-------------------------------------------------LGGVFR 374 (607)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~l~~L~~-------------------------------------------------L~~~l~ 374 (607)
.++++++.+.+..........|+. ++ .+.
T Consensus 183 -~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~-~L~ 260 (606)
T 3t6q_A 183 -SLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVE-SIN 260 (606)
T ss_dssp -EEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEE-EEE
T ss_pred -EEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCcee-EEE
Confidence 244666655443332222111110 11 111
Q ss_pred EeccCCCCCHhHHHHHHhcCCCCCcceEEEecCCCCCchhcHHHHhhcCCCCCCcceEEEeecCCCCCCChhhhcCCCcc
Q 007330 375 ITGLGNVTDVDEAENAELEKKRNVVDLGLWFDKDEEGEEADHEEIIEALKPHSNLVALDILGFKGKITFPKWIMSLNNLK 454 (607)
Q Consensus 375 i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~l~~l~~L~ 454 (607)
+.+.. + .......+..+++|+.|+++.|... .+|..+..+++|++|++++|.+....|..+..+++|+
T Consensus 261 l~~n~-l---~~~~~~~~~~l~~L~~L~l~~n~l~--------~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 328 (606)
T 3t6q_A 261 LQKHY-F---FNISSNTFHCFSGLQELDLTATHLS--------ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLT 328 (606)
T ss_dssp CTTCC-C---SSCCTTTTTTCTTCSEEECTTSCCS--------CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCS
T ss_pred eecCc-c---CccCHHHhccccCCCEEeccCCccC--------CCChhhcccccCCEEECccCCcCcCchhhhhccCcCC
Confidence 11110 0 0111123556677888887777542 3455667777888888887777664455667777777
Q ss_pred EEEEecCCCCCcCC--CCCCCCCCCeeEecCCcCeeeC--ccccCCCCCCccCCCccceeeeccccccccccccc-----
Q 007330 455 SLHLRSCEKCEILS--PLGKLPSLETLYIAGMSGKRVG--DEFFGIGSDCNIAFPKLKFLRVVDMFEWEEWGFGI----- 525 (607)
Q Consensus 455 ~L~L~~~~~~~~~~--~l~~l~~L~~L~L~~~~~~~~~--~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~----- 525 (607)
+|++++|.....++ .++.+++|++|++++|.+..++ ...+ ..+++|++|+++++.-....+..+
T Consensus 329 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 401 (606)
T 3t6q_A 329 HLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL-------RNLSHLQSLNLSYNEPLSLKTEAFKECPQ 401 (606)
T ss_dssp EEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTT-------TTCTTCCEEECCSCSCEEECTTTTTTCTT
T ss_pred EEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhc-------ccCCCCCEEECCCCcCCcCCHHHhcCCcc
Confidence 77777776443322 2667777777777777755443 1111 256666666666652111111110
Q ss_pred ----c-----c--cCcccccccCCccceeeeecccCccccCCCCCCCCCcCeEEEecCcchhHhhhcCCCCCCCcccccC
Q 007330 526 ----T-----R--SNVKEDVMVMPCLNYLDIQFCFKLKALPGYLLEITALEKLEILCCPILEQRYRKGTGEDWAKVAHVP 594 (607)
Q Consensus 526 ----~-----~--~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ip 594 (607)
. + ...+..+..+++|++|++++|..-...|..+..+++|++|++++|+--.... .....+.....+.
T Consensus 402 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~~~l~~L~ 479 (606)
T 3t6q_A 402 LELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNI--QKTNSLQTLGRLE 479 (606)
T ss_dssp CSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEE--CSSCGGGGCTTCC
T ss_pred CCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCcccc--ccchhhccCCCcc
Confidence 0 0 0011225567777777777764333345556667777777777775322111 1112244556666
Q ss_pred eeEeCceEeec
Q 007330 595 TITINRQYVQG 605 (607)
Q Consensus 595 ~~~~~~~~~~~ 605 (607)
.+.+.++.+.+
T Consensus 480 ~L~Ls~n~l~~ 490 (606)
T 3t6q_A 480 ILVLSFCDLSS 490 (606)
T ss_dssp EEECTTSCCCE
T ss_pred EEECCCCccCc
Confidence 67777766554
No 9
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.94 E-value=3.8e-27 Score=254.69 Aligned_cols=134 Identities=21% Similarity=0.205 Sum_probs=106.2
Q ss_pred cCceeEEEEEeCCCCCcc-ccccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCccccccccccccc-ccccC
Q 007330 189 LEKFRHSMLVLGRRASFP-VSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIP-KEKEK 266 (607)
Q Consensus 189 ~~~~r~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp-~~~~~ 266 (607)
+..++++.++++.+..++ ..+..+++|++|++++|. .....+..|..+++|++|+++ ++.+..+| ..++.
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~--i~~i~~~~~~~l~~L~~L~L~------~n~l~~~~~~~~~~ 98 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE--IQTIEDGAYQSLSHLSTLILT------GNPIQSLALGAFSG 98 (570)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCC--CCEECTTTTTTCTTCCEEECT------TCCCCEECTTTTTT
T ss_pred cccccEEEccCCccCccChhHhhCCCCceEEECCCCc--CCccCcccccCchhCCEEeCc------CCcCCccCHhhhcC
Confidence 567899999888887653 467889999999999886 444456668889999999999 77777774 67888
Q ss_pred cccccEEecCCCCcccCch-hhhcCCcccEeecCCCCCcc--ccccccccccCcccccccccccccCc
Q 007330 267 LVHLRYLKLSLLMREELPD-IVCELFNLQTLEVEHCPRLK--RLPQGIGKLVNLRHLIYYYSNLDYMP 331 (607)
Q Consensus 267 l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~--~lp~~i~~l~~L~~L~~~~~~l~~lp 331 (607)
+++|++|++++|.+..+|. .++++++|++|++++|. +. .+|..++++++|++|+++.|.+..++
T Consensus 99 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~ 165 (570)
T 2z63_A 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (570)
T ss_dssp CTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECTTSCCCEEC
T ss_pred ccccccccccccccccCCCccccccccccEEecCCCc-cceecChhhhcccCCCCEEeCcCCccceec
Confidence 8888888888888888876 58888888888888887 54 36888888888888888877776553
No 10
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=6.3e-26 Score=238.22 Aligned_cols=275 Identities=19% Similarity=0.186 Sum_probs=156.9
Q ss_pred cCceeEEEEEeCCCCCccccccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccccccccccCcc
Q 007330 189 LEKFRHSMLVLGRRASFPVSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIPKEKEKLV 268 (607)
Q Consensus 189 ~~~~r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp~~~~~l~ 268 (607)
...++.+.+.++.+..++ .+..+++|++|++++|. .... +. +..+++|++|+++ ++.+..++. ++.++
T Consensus 45 l~~l~~L~l~~~~i~~l~-~~~~l~~L~~L~Ls~n~--l~~~-~~-~~~l~~L~~L~l~------~n~l~~~~~-~~~l~ 112 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQ--LTDI-TP-LKNLTKLVDILMN------NNQIADITP-LANLT 112 (466)
T ss_dssp HHTCCEEECCSSCCCCCT-TGGGCTTCCEEECCSSC--CCCC-GG-GTTCTTCCEEECC------SSCCCCCGG-GTTCT
T ss_pred hccccEEecCCCCCccCc-chhhhcCCCEEECCCCc--cCCc-hh-hhccccCCEEECC------CCccccChh-hcCCC
Confidence 346777777777766643 46677888888888775 3232 23 6778888888888 667777765 77788
Q ss_pred cccEEecCCCCcccCchhhhcCCcccEeecCCCCCccccccccccccCcccccccccccccCcCCCCCCCCCCccCcEEe
Q 007330 269 HLRYLKLSLLMREELPDIVCELFNLQTLEVEHCPRLKRLPQGIGKLVNLRHLIYYYSNLDYMPKGFERLTCLRTLTEFVV 348 (607)
Q Consensus 269 ~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~l~~lp~~i~~l~~L~~L~~~~~ 348 (607)
+|++|++++|.+..+|. +.++++|++|++++|. +..+| .++.+++|++|+++ +.+..++. +..+++|+.|. +
T Consensus 113 ~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~-~~~~l~~L~~L~l~-~~~~~~~~-~~~l~~L~~L~---l 184 (466)
T 1o6v_A 113 NLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNT-ISDIS-ALSGLTSLQQLSFG-NQVTDLKP-LANLTTLERLD---I 184 (466)
T ss_dssp TCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEE-ECCCG-GGTTCTTCSEEEEE-ESCCCCGG-GTTCTTCCEEE---C
T ss_pred CCCEEECCCCCCCCChH-HcCCCCCCEEECCCCc-cCCCh-hhccCCcccEeecC-CcccCchh-hccCCCCCEEE---C
Confidence 88888888888777765 7788888888888876 66665 46677777777754 33333332 44444444443 5
Q ss_pred cCCccCCCcccccccccccccCceEEEeccCCCCCHhHHHHHHhcCCCCCcceEEEecCCCCCchhcHHHHhhcCCCCCC
Q 007330 349 SGGKYSGKACNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAELEKKRNVVDLGLWFDKDEEGEEADHEEIIEALKPHSN 428 (607)
Q Consensus 349 ~~~~~~~~~~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~ 428 (607)
+++.+... ..+..++.|+ .+.+.+....... .+..+++|+.|+++.|..... ..+..+++
T Consensus 185 ~~n~l~~~----~~l~~l~~L~-~L~l~~n~l~~~~------~~~~l~~L~~L~l~~n~l~~~---------~~l~~l~~ 244 (466)
T 1o6v_A 185 SSNKVSDI----SVLAKLTNLE-SLIATNNQISDIT------PLGILTNLDELSLNGNQLKDI---------GTLASLTN 244 (466)
T ss_dssp CSSCCCCC----GGGGGCTTCS-EEECCSSCCCCCG------GGGGCTTCCEEECCSSCCCCC---------GGGGGCTT
T ss_pred cCCcCCCC----hhhccCCCCC-EEEecCCcccccc------cccccCCCCEEECCCCCcccc---------hhhhcCCC
Confidence 55553332 1233333333 4544443221111 144456666666665544211 23344555
Q ss_pred cceEEEeecCCCCCCChhhhcCCCccEEEEecCCCCCcCCCCCCCCCCCeeEecCCcCeeeCccccCCCCCCccCCCccc
Q 007330 429 LVALDILGFKGKITFPKWIMSLNNLKSLHLRSCEKCEILSPLGKLPSLETLYIAGMSGKRVGDEFFGIGSDCNIAFPKLK 508 (607)
Q Consensus 429 L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~L~ 508 (607)
|+.|++++|.... ++. +..+++|+.|++++|.... .+.+..+++|+.|++++|.++.++. + ..+++|+
T Consensus 245 L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~L~~n~l~~~~~--~-------~~l~~L~ 312 (466)
T 1o6v_A 245 LTDLDLANNQISN-LAP-LSGLTKLTELKLGANQISN-ISPLAGLTALTNLELNENQLEDISP--I-------SNLKNLT 312 (466)
T ss_dssp CSEEECCSSCCCC-CGG-GTTCTTCSEEECCSSCCCC-CGGGTTCTTCSEEECCSSCCSCCGG--G-------GGCTTCS
T ss_pred CCEEECCCCcccc-chh-hhcCCCCCEEECCCCccCc-cccccCCCccCeEEcCCCcccCchh--h-------cCCCCCC
Confidence 6666666655554 332 4555566666666553322 2225555556666665555443322 1 2455555
Q ss_pred eeeeccc
Q 007330 509 FLRVVDM 515 (607)
Q Consensus 509 ~L~l~~~ 515 (607)
.|+++++
T Consensus 313 ~L~L~~n 319 (466)
T 1o6v_A 313 YLTLYFN 319 (466)
T ss_dssp EEECCSS
T ss_pred EEECcCC
Confidence 5555554
No 11
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=4.7e-26 Score=245.18 Aligned_cols=370 Identities=15% Similarity=0.093 Sum_probs=224.4
Q ss_pred eeEEEEEeCCCCCccccccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccccc-cccccCcccc
Q 007330 192 FRHSMLVLGRRASFPVSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAI-PKEKEKLVHL 270 (607)
Q Consensus 192 ~r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~l-p~~~~~l~~L 270 (607)
.+++.+.++.+..+|..+. +++++|++++|. .....+..|..+++|++|+++ ++.++.+ |..++.+++|
T Consensus 33 ~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~--i~~~~~~~~~~l~~L~~L~Ls------~N~l~~~~~~~~~~l~~L 102 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDLP--PRTKALSLSQNS--ISELRMPDISFLSELRVLRLS------HNRIRSLDFHVFLFNQDL 102 (562)
T ss_dssp CCEEECTTSCCCSCCTTSC--TTCCEEECCSSC--CCCCCGGGTTTCTTCCEEECC------SCCCCEECTTTTTTCTTC
T ss_pred CcEEEcCCCCCccCCCCCC--CCcCEEECCCCC--ccccChhhhccCCCccEEECC------CCCCCcCCHHHhCCCCCC
Confidence 3777887777777666553 788888888886 445455668888888888888 7777777 6678888888
Q ss_pred cEEecCCCCcccCchhhhcCCcccEeecCCCCCcccc--ccccccccCcccccccccccccCcCCCCCCCCCCccCcEEe
Q 007330 271 RYLKLSLLMREELPDIVCELFNLQTLEVEHCPRLKRL--PQGIGKLVNLRHLIYYYSNLDYMPKGFERLTCLRTLTEFVV 348 (607)
Q Consensus 271 ~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~l--p~~i~~l~~L~~L~~~~~~l~~lp~~i~~l~~L~~L~~~~~ 348 (607)
++|++++|.+..+|.. .+++|++|++++|. +..+ |..++++++|++|+++.|.+.. ..+..+++| .|..+.+
T Consensus 103 ~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L-~L~~L~L 176 (562)
T 3a79_B 103 EYLDVSHNRLQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHL-HLSCILL 176 (562)
T ss_dssp CEEECTTSCCCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTS-CEEEEEE
T ss_pred CEEECCCCcCCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCcccc--Cchhhhhhc-eeeEEEe
Confidence 8888888888888876 78888888888887 6654 4678888888888888887765 234555555 3344445
Q ss_pred cCCcc--CCC-cccccccc-----------------------cccccCceEEEeccCC----------------------
Q 007330 349 SGGKY--SGK-ACNIEGLR-----------------------HLNHLGGVFRITGLGN---------------------- 380 (607)
Q Consensus 349 ~~~~~--~~~-~~~~~~l~-----------------------~L~~L~~~l~i~~~~~---------------------- 380 (607)
+.+.+ .+. +..+..+. .+..++ .+.+.....
T Consensus 177 ~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~-~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~ 255 (562)
T 3a79_B 177 DLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQ-LSNIKLNDENCQRLMTFLSELTRGPTLLNVT 255 (562)
T ss_dssp EESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEE-EEEEECCSTTHHHHHHHHHHHHSCSSCEEEE
T ss_pred ecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEE-EecccccccccchHHHHHHHHhccCcceEEE
Confidence 55543 111 11111111 122222 333332100
Q ss_pred -----CCCHhHHHHHHhcCCCCCcceEEEecCCCCCchh----------------------------cHHHHhh------
Q 007330 381 -----VTDVDEAENAELEKKRNVVDLGLWFDKDEEGEEA----------------------------DHEEIIE------ 421 (607)
Q Consensus 381 -----~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~----------------------------~~~~~~~------ 421 (607)
+...............+|++|+++.|........ .......
T Consensus 256 L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~ 335 (562)
T 3a79_B 256 LQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKM 335 (562)
T ss_dssp EEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSE
T ss_pred ecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceE
Confidence 0000000001111223666677666643210000 0000000
Q ss_pred ------------cCCCCCCcceEEEeecCCCCCCChhhhcCCCccEEEEecCCCCCc---CCCCCCCCCCCeeEecCCcC
Q 007330 422 ------------ALKPHSNLVALDILGFKGKITFPKWIMSLNNLKSLHLRSCEKCEI---LSPLGKLPSLETLYIAGMSG 486 (607)
Q Consensus 422 ------------~l~~~~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~---~~~l~~l~~L~~L~L~~~~~ 486 (607)
....+++|+.|++++|.+.+..|.++..+++|+.|++++|..... +..++.+++|++|++++|.+
T Consensus 336 L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l 415 (562)
T 3a79_B 336 LSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSL 415 (562)
T ss_dssp EEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCC
T ss_pred EEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcC
Confidence 014667888888888887776777778888888888888854431 12467888888888888886
Q ss_pred ee-eCccccCCCCCCccCCCccceeeeccccccccccccccccCcccccccC-CccceeeeecccCccccCCCCCCCCCc
Q 007330 487 KR-VGDEFFGIGSDCNIAFPKLKFLRVVDMFEWEEWGFGITRSNVKEDVMVM-PCLNYLDIQFCFKLKALPGYLLEITAL 564 (607)
Q Consensus 487 ~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~c~~l~~lp~~~~~l~~L 564 (607)
+. ++...+. .+++|+.|+++++.-....+. .+ ++|++|++++| .++.+|..+..+++|
T Consensus 416 ~~~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~------------~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L 475 (562)
T 3a79_B 416 NSHAYDRTCA-------WAESILVLNLSSNMLTGSVFR------------CLPPKVKVLDLHNN-RIMSIPKDVTHLQAL 475 (562)
T ss_dssp BSCCSSCCCC-------CCTTCCEEECCSSCCCGGGGS------------SCCTTCSEEECCSS-CCCCCCTTTTSSCCC
T ss_pred CCccChhhhc-------CcccCCEEECCCCCCCcchhh------------hhcCcCCEEECCCC-cCcccChhhcCCCCC
Confidence 55 6554432 567777777777632222221 23 57777777775 566777666677777
Q ss_pred CeEEEecCcchhHhhhcCCCC-CCCcccccCeeEeCceEee
Q 007330 565 EKLEILCCPILEQRYRKGTGE-DWAKVAHVPTITINRQYVQ 604 (607)
Q Consensus 565 ~~L~l~~c~~l~~~~~~~~~~-~~~~~~~ip~~~~~~~~~~ 604 (607)
+.|++++|. ++. ... .+..+.++..+.+.+|.+.
T Consensus 476 ~~L~L~~N~-l~~-----l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 476 QELNVASNQ-LKS-----VPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp SEEECCSSC-CCC-----CCTTSTTTCTTCCCEECCSCCBC
T ss_pred CEEECCCCC-CCC-----CCHHHHhcCCCCCEEEecCCCcC
Confidence 777777764 221 111 1444555566666666554
No 12
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.94 E-value=6.1e-26 Score=242.22 Aligned_cols=126 Identities=17% Similarity=0.179 Sum_probs=103.8
Q ss_pred cCceeEEEEEeCCCCCcc-ccccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccccccccccCc
Q 007330 189 LEKFRHSMLVLGRRASFP-VSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIPKEKEKL 267 (607)
Q Consensus 189 ~~~~r~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp~~~~~l 267 (607)
+.+++++.++++.+..++ ..+..+++|++|++++|. .....+..|..+++|++|+++ ++.++.+|.. .+
T Consensus 20 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls------~N~l~~lp~~--~l 89 (520)
T 2z7x_B 20 SQKTTILNISQNYISELWTSDILSLSKLRILIISHNR--IQYLDISVFKFNQELEYLDLS------HNKLVKISCH--PT 89 (520)
T ss_dssp CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSC--CCEEEGGGGTTCTTCCEEECC------SSCCCEEECC--CC
T ss_pred cccccEEECCCCcccccChhhccccccccEEecCCCc--cCCcChHHhhcccCCCEEecC------CCceeecCcc--cc
Confidence 478999999999887764 578889999999999987 445556678899999999999 8888888876 78
Q ss_pred ccccEEecCCCCccc--CchhhhcCCcccEeecCCCCCccccccccccccCc--cccccccccc
Q 007330 268 VHLRYLKLSLLMREE--LPDIVCELFNLQTLEVEHCPRLKRLPQGIGKLVNL--RHLIYYYSNL 327 (607)
Q Consensus 268 ~~L~~L~L~~~~i~~--lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L--~~L~~~~~~l 327 (607)
++|++|++++|.+.. +|..++++++|++|++++|. +.. ..+..+++| ++|+++.|.+
T Consensus 90 ~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 90 VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK--SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG--GGGGGGTTSCEEEEEEEECTT
T ss_pred CCccEEeccCCccccccchhhhccCCcceEEEecCcc-cch--hhccccccceeeEEEeecccc
Confidence 999999999999876 56889999999999999987 554 356777777 8888777766
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=4.4e-26 Score=245.08 Aligned_cols=284 Identities=15% Similarity=0.113 Sum_probs=191.1
Q ss_pred cCceeEEEEEeCCCCCc-cccccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCccccccccccccccc-ccC
Q 007330 189 LEKFRHSMLVLGRRASF-PVSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIPKE-KEK 266 (607)
Q Consensus 189 ~~~~r~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp~~-~~~ 266 (607)
...++++.+.++.+..+ +..+..+++|++|++++|. .....+..|..+++|++|+++ ++.+..+|.. ++.
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~Ls------~n~l~~~~~~~~~~ 96 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR--INTIEGDAFYSLGSLEHLDLS------DNHLSSLSSSWFGP 96 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSC--CCEECTTTTTTCTTCCEEECT------TSCCCSCCHHHHTT
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCCC--cCccChhhccccccCCEEECC------CCccCccCHHHhcc
Confidence 46799999999988765 4578889999999999986 445556668899999999999 7888877654 889
Q ss_pred cccccEEecCCCCccc--CchhhhcCCcccEeecCCCCCccccc-cccccccCccccccccccccc-CcCCCCCCCCCCc
Q 007330 267 LVHLRYLKLSLLMREE--LPDIVCELFNLQTLEVEHCPRLKRLP-QGIGKLVNLRHLIYYYSNLDY-MPKGFERLTCLRT 342 (607)
Q Consensus 267 l~~L~~L~L~~~~i~~--lp~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~~~~~~l~~-lp~~i~~l~~L~~ 342 (607)
+++|++|++++|.+.. +|..++++++|++|++++|..++.+| ..++.+++|++|+++.|.+.. .|..++.+++|+.
T Consensus 97 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 176 (549)
T 2z81_A 97 LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHH 176 (549)
T ss_dssp CTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEE
T ss_pred CCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCce
Confidence 9999999999999875 46678999999999999987677776 468889999999988888765 5566666554433
Q ss_pred ---------------------cCcEEecCCccCCCcc---c-ccccccc-------------------------cccCc-
Q 007330 343 ---------------------LTEFVVSGGKYSGKAC---N-IEGLRHL-------------------------NHLGG- 371 (607)
Q Consensus 343 ---------------------L~~~~~~~~~~~~~~~---~-~~~l~~L-------------------------~~L~~- 371 (607)
|..++++++.+.+... . ...+++| ..+..
T Consensus 177 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l 256 (549)
T 2z81_A 177 LTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV 256 (549)
T ss_dssp EEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEE
T ss_pred EecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccc
Confidence 3334455554433210 0 0000000 01110
Q ss_pred ----------------------------eEEEeccC----------------------------CCCCHhHHHHHHhcCC
Q 007330 372 ----------------------------VFRITGLG----------------------------NVTDVDEAENAELEKK 395 (607)
Q Consensus 372 ----------------------------~l~i~~~~----------------------------~~~~~~~~~~~~l~~~ 395 (607)
.+.+.... .+..+. ...+..+
T Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip---~~~~~~l 333 (549)
T 2z81_A 257 EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVP---CSFSQHL 333 (549)
T ss_dssp EEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCC---HHHHHHC
T ss_pred ccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCC---HHHHhcC
Confidence 11111110 000000 1112346
Q ss_pred CCCcceEEEecCCCCCchhcHHHH---hhcCCCCCCcceEEEeecCCCCCCC---hhhhcCCCccEEEEecCCCCCcCCC
Q 007330 396 RNVVDLGLWFDKDEEGEEADHEEI---IEALKPHSNLVALDILGFKGKITFP---KWIMSLNNLKSLHLRSCEKCEILSP 469 (607)
Q Consensus 396 ~~L~~L~l~~~~~~~~~~~~~~~~---~~~l~~~~~L~~L~l~~~~~~~~lp---~~l~~l~~L~~L~L~~~~~~~~~~~ 469 (607)
++|+.|+++.|... +.. +..++.+++|+.|++++|.+.. +| ..+..+++|++|++++|.....+..
T Consensus 334 ~~L~~L~Ls~N~l~-------~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~ 405 (549)
T 2z81_A 334 KSLEFLDLSENLMV-------EEYLKNSACKGAWPSLQTLVLSQNHLRS-MQKTGEILLTLKNLTSLDISRNTFHPMPDS 405 (549)
T ss_dssp TTCCEEECCSSCCC-------HHHHHHHTCTTSSTTCCEEECTTSCCCC-HHHHHHHGGGCTTCCEEECTTCCCCCCCSC
T ss_pred ccccEEEccCCccc-------cccccchhhhhccccCcEEEccCCcccc-cccchhhhhcCCCCCEEECCCCCCccCChh
Confidence 77777777777642 223 3346777888888888888776 54 3466888899999988865555556
Q ss_pred CCCCCCCCeeEecCCcCeeeCc
Q 007330 470 LGKLPSLETLYIAGMSGKRVGD 491 (607)
Q Consensus 470 l~~l~~L~~L~L~~~~~~~~~~ 491 (607)
++.+++|++|++++|.++.++.
T Consensus 406 ~~~~~~L~~L~Ls~N~l~~l~~ 427 (549)
T 2z81_A 406 CQWPEKMRFLNLSSTGIRVVKT 427 (549)
T ss_dssp CCCCTTCCEEECTTSCCSCCCT
T ss_pred hcccccccEEECCCCCcccccc
Confidence 7788888888888888665543
No 14
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=9.2e-27 Score=253.48 Aligned_cols=144 Identities=15% Similarity=0.149 Sum_probs=111.5
Q ss_pred cCceeEEEEEeCCCCCc-cccccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCccccccccccccc-ccccC
Q 007330 189 LEKFRHSMLVLGRRASF-PVSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIP-KEKEK 266 (607)
Q Consensus 189 ~~~~r~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp-~~~~~ 266 (607)
...++++.+.++.+..+ +..+.++++|++|++++|. .....+..|..+++|++|+++ ++.+..+| ..++.
T Consensus 55 l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~--l~~~~p~~~~~l~~L~~L~L~------~n~l~~~~~~~~~~ 126 (606)
T 3vq2_A 55 FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP--IQSFSPGSFSGLTSLENLVAV------ETKLASLESFPIGQ 126 (606)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC--CCCCCTTSSTTCTTCCEEECT------TSCCCCSSSSCCTT
T ss_pred CccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc--ccccChhhcCCcccCCEEEcc------CCccccccccccCC
Confidence 56789999998888765 4567899999999999986 445456678999999999999 78887775 67899
Q ss_pred cccccEEecCCCCcc--cCchhhhcCCcccEeecCCCCCcccc-ccccccccCcc----cccccccccccCcCCCCCCCC
Q 007330 267 LVHLRYLKLSLLMRE--ELPDIVCELFNLQTLEVEHCPRLKRL-PQGIGKLVNLR----HLIYYYSNLDYMPKGFERLTC 339 (607)
Q Consensus 267 l~~L~~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~l~~L~----~L~~~~~~l~~lp~~i~~l~~ 339 (607)
+++|++|++++|.+. .+|..++++++|++|++++|. +..+ |..++.+++|+ +|+++.|.+..+|.......+
T Consensus 127 l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~ 205 (606)
T 3vq2_A 127 LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK 205 (606)
T ss_dssp CTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC-CCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCE
T ss_pred CCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc-ceecChhhhhhhhccccccceeeccCCCcceeCcccccCce
Confidence 999999999999977 478889999999999999987 5544 45566666655 567777777666655443333
Q ss_pred CC
Q 007330 340 LR 341 (607)
Q Consensus 340 L~ 341 (607)
|+
T Consensus 206 L~ 207 (606)
T 3vq2_A 206 LH 207 (606)
T ss_dssp EE
T ss_pred ee
Confidence 33
No 15
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=8.1e-26 Score=228.18 Aligned_cols=302 Identities=16% Similarity=0.119 Sum_probs=204.5
Q ss_pred cCceeEEEEEeCCCCCccccccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccccccccccCcc
Q 007330 189 LEKFRHSMLVLGRRASFPVSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIPKEKEKLV 268 (607)
Q Consensus 189 ~~~~r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp~~~~~l~ 268 (607)
..+++++.+.++.+..+ +.+..+++|++|++++|. ... ++. +..+++|++|+++ ++.+..+| .+..++
T Consensus 43 l~~L~~L~l~~~~i~~~-~~~~~~~~L~~L~l~~n~--i~~-~~~-~~~l~~L~~L~L~------~n~i~~~~-~~~~l~ 110 (347)
T 4fmz_A 43 LESITKLVVAGEKVASI-QGIEYLTNLEYLNLNGNQ--ITD-ISP-LSNLVKLTNLYIG------TNKITDIS-ALQNLT 110 (347)
T ss_dssp HTTCSEEECCSSCCCCC-TTGGGCTTCCEEECCSSC--CCC-CGG-GTTCTTCCEEECC------SSCCCCCG-GGTTCT
T ss_pred cccccEEEEeCCccccc-hhhhhcCCccEEEccCCc--ccc-chh-hhcCCcCCEEEcc------CCcccCch-HHcCCC
Confidence 55677777777776664 346667777777777775 222 222 6677777777777 66666664 467777
Q ss_pred cccEEecCCCCcccCchhhhcCCcccEeecCCCCCccccccccccccCcccccccccccccCcCCCCCCCCCCccCcEEe
Q 007330 269 HLRYLKLSLLMREELPDIVCELFNLQTLEVEHCPRLKRLPQGIGKLVNLRHLIYYYSNLDYMPKGFERLTCLRTLTEFVV 348 (607)
Q Consensus 269 ~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~l~~lp~~i~~l~~L~~L~~~~~ 348 (607)
+|++|++++|.+..+|. +.++++|++|++++|..+..++ .+..+++|++|+++.+.+..++. +..+++|+.|. +
T Consensus 111 ~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~---l 184 (347)
T 4fmz_A 111 NLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLS---L 184 (347)
T ss_dssp TCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEE---C
T ss_pred cCCEEECcCCcccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh-hccCCCCCEEE---c
Confidence 77777777777777766 7777777777777776555554 47777777777777776666554 44444444443 5
Q ss_pred cCCccCCCcccccccccccccCceEEEeccCCCCCHhHHHHHHhcCCCCCcceEEEecCCCCCchhcHHHHhhcCCCCCC
Q 007330 349 SGGKYSGKACNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAELEKKRNVVDLGLWFDKDEEGEEADHEEIIEALKPHSN 428 (607)
Q Consensus 349 ~~~~~~~~~~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~ 428 (607)
+++.+..... +..+++|+.|+++.|..... ..+..+++
T Consensus 185 ~~n~l~~~~~---------------------------------~~~l~~L~~L~l~~n~l~~~---------~~~~~~~~ 222 (347)
T 4fmz_A 185 NYNQIEDISP---------------------------------LASLTSLHYFTAYVNQITDI---------TPVANMTR 222 (347)
T ss_dssp TTSCCCCCGG---------------------------------GGGCTTCCEEECCSSCCCCC---------GGGGGCTT
T ss_pred cCCccccccc---------------------------------ccCCCccceeecccCCCCCC---------chhhcCCc
Confidence 5544221111 34455666677766654221 11556788
Q ss_pred cceEEEeecCCCCCCChhhhcCCCccEEEEecCCCCCcCCCCCCCCCCCeeEecCCcCeeeCccccCCCCCCccCCCccc
Q 007330 429 LVALDILGFKGKITFPKWIMSLNNLKSLHLRSCEKCEILSPLGKLPSLETLYIAGMSGKRVGDEFFGIGSDCNIAFPKLK 508 (607)
Q Consensus 429 L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~L~ 508 (607)
|+.|++++|.... +|. +..+++|++|++++|.. ..++.+..+++|++|++++|.++.++. + ..+++|+
T Consensus 223 L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~l~~n~l~~~~~--~-------~~l~~L~ 290 (347)
T 4fmz_A 223 LNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQI-SDINAVKDLTKLKMLNVGSNQISDISV--L-------NNLSQLN 290 (347)
T ss_dssp CCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCC-CCCGGGTTCTTCCEEECCSSCCCCCGG--G-------GGCTTCS
T ss_pred CCEEEccCCccCC-Ccc-hhcCCCCCEEECCCCcc-CCChhHhcCCCcCEEEccCCccCCChh--h-------cCCCCCC
Confidence 8999998888877 555 77888999999998853 345668888999999999988666532 2 3688899
Q ss_pred eeeeccccccccccccccccCcccccccCCccceeeeecccCccccCCCCCCCCCcCeEEEecCc
Q 007330 509 FLRVVDMFEWEEWGFGITRSNVKEDVMVMPCLNYLDIQFCFKLKALPGYLLEITALEKLEILCCP 573 (607)
Q Consensus 509 ~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 573 (607)
.|+++++.-....+.. +..+++|++|++++|+ +..++. +..+++|+.|++++|+
T Consensus 291 ~L~L~~n~l~~~~~~~---------l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 291 SLFLNNNQLGNEDMEV---------IGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp EEECCSSCCCGGGHHH---------HHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC-
T ss_pred EEECcCCcCCCcChhH---------hhccccCCEEEccCCc-cccccC-hhhhhccceeehhhhc
Confidence 9999988432222222 5678999999999975 666655 7778999999998886
No 16
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.93 E-value=3.3e-26 Score=249.09 Aligned_cols=130 Identities=13% Similarity=0.065 Sum_probs=71.5
Q ss_pred cCceeEEEEEeCCCCCc-cccccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccccc-cccccC
Q 007330 189 LEKFRHSMLVLGRRASF-PVSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAI-PKEKEK 266 (607)
Q Consensus 189 ~~~~r~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~l-p~~~~~ 266 (607)
..+++++.+.++.+..+ +..+..+++|++|++++|. .....+..+..+++|++|+++ ++.+..+ |..++.
T Consensus 56 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~------~n~i~~l~~~~~~~ 127 (606)
T 3t6q_A 56 LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP--LIFMAETALSGPKALKHLFFI------QTGISSIDFIPLHN 127 (606)
T ss_dssp CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC--CSEECTTTTSSCTTCCEEECT------TSCCSCGGGSCCTT
T ss_pred CccceEEECCCCccceeChhhccCccccCeeeCCCCc--ccccChhhhcccccccEeecc------ccCcccCCcchhcc
Confidence 34566777766665543 4456667777777777665 333334456666677777776 5555554 445556
Q ss_pred cccccEEecCCCCcccCc-hhhhcCCcccEeecCCCCCcccc-ccccccccCcc--ccccccccc
Q 007330 267 LVHLRYLKLSLLMREELP-DIVCELFNLQTLEVEHCPRLKRL-PQGIGKLVNLR--HLIYYYSNL 327 (607)
Q Consensus 267 l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~l~~L~--~L~~~~~~l 327 (607)
+++|++|++++|.+..++ +.+..+++|++|++++|. +..+ |..++.+++|+ .|+++.|.+
T Consensus 128 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 128 QKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKEDMSSLQQATNLSLNLNGNDI 191 (606)
T ss_dssp CTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSC-CCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred CCcccEEECCCCcccccCcccccCCcccCEEEcccCc-ccccChhhhhhhcccceeEEecCCCcc
Confidence 666666666666655542 223335666666666554 3333 33344444444 334444333
No 17
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=1.3e-25 Score=235.54 Aligned_cols=356 Identities=15% Similarity=0.121 Sum_probs=253.3
Q ss_pred cCceeEEEEEeCCCCCc-cccccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccccc-cccccC
Q 007330 189 LEKFRHSMLVLGRRASF-PVSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAI-PKEKEK 266 (607)
Q Consensus 189 ~~~~r~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~l-p~~~~~ 266 (607)
+.+++++.+.++.+..+ +..+.++++|++|++++|.. .....+..|..+++|++|+++ ++.+..+ |..++.
T Consensus 29 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~-~~~i~~~~~~~l~~L~~L~Ls------~n~l~~~~~~~~~~ 101 (455)
T 3v47_A 29 PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTP-GLVIRNNTFRGLSSLIILKLD------YNQFLQLETGAFNG 101 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCST-TCEECTTTTTTCTTCCEEECT------TCTTCEECTTTTTT
T ss_pred CCccCEEEecCCccCcCChhHhccCccccEEECcCCcc-cceECcccccccccCCEEeCC------CCccCccChhhccC
Confidence 57899999999988765 56788999999999999862 113335668899999999999 7788776 788999
Q ss_pred cccccEEecCCCCccc-Cchh--hhcCCcccEeecCCCCCcccc-ccc-cccccCcccccccccccccCcC-CCCCCCCC
Q 007330 267 LVHLRYLKLSLLMREE-LPDI--VCELFNLQTLEVEHCPRLKRL-PQG-IGKLVNLRHLIYYYSNLDYMPK-GFERLTCL 340 (607)
Q Consensus 267 l~~L~~L~L~~~~i~~-lp~~--i~~L~~L~~L~L~~~~~l~~l-p~~-i~~l~~L~~L~~~~~~l~~lp~-~i~~l~~L 340 (607)
+++|++|++++|.+.. +|.. ++++++|++|++++|. +..+ |.. ++.+++|++|+++.|.+..++. .+..+..
T Consensus 102 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~- 179 (455)
T 3v47_A 102 LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQG- 179 (455)
T ss_dssp CTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTT-
T ss_pred cccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcccccChhhhhcccc-
Confidence 9999999999999875 4444 8899999999999998 6655 655 7899999999999998876643 4444421
Q ss_pred CccCcEEecCCccCCCcccc------cccccccccCceEEEeccCCCCCHhHHHHHHhcCCCCCcceEEEecCCCCCchh
Q 007330 341 RTLTEFVVSGGKYSGKACNI------EGLRHLNHLGGVFRITGLGNVTDVDEAENAELEKKRNVVDLGLWFDKDEEGEEA 414 (607)
Q Consensus 341 ~~L~~~~~~~~~~~~~~~~~------~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 414 (607)
..|..+.++.+.+....... ..+..++.|+ .+.+.+..- ...............+|+.|+++.+........
T Consensus 180 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~-~L~Ls~n~l-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 257 (455)
T 3v47_A 180 KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSIT-TLDLSGNGF-KESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG 257 (455)
T ss_dssp CEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEE-EEECTTSCC-CHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT
T ss_pred ccccccccccCcccccchhhccccccccccccceee-eEecCCCcc-cccchhhhhccccccceeeEeeccccccccccc
Confidence 24444557776654433211 1111223333 555554322 111111222233457888888877643211000
Q ss_pred c---HHHHhhcC--CCCCCcceEEEeecCCCCCCChhhhcCCCccEEEEecCCCCCcCC-CCCCCCCCCeeEecCCcCee
Q 007330 415 D---HEEIIEAL--KPHSNLVALDILGFKGKITFPKWIMSLNNLKSLHLRSCEKCEILS-PLGKLPSLETLYIAGMSGKR 488 (607)
Q Consensus 415 ~---~~~~~~~l--~~~~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~ 488 (607)
. .......+ ...++|+.|++++|.+....|.++..+++|+.|++++|......+ .++.+++|++|++++|.++.
T Consensus 258 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 337 (455)
T 3v47_A 258 HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS 337 (455)
T ss_dssp CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCC
Confidence 0 00000001 123689999999999988778889999999999999997666544 68899999999999999877
Q ss_pred eCccccCCCCCCccCCCccceeeeccccccccc-cccccccCcccccccCCccceeeeecccCccccCCC-CCCCCCcCe
Q 007330 489 VGDEFFGIGSDCNIAFPKLKFLRVVDMFEWEEW-GFGITRSNVKEDVMVMPCLNYLDIQFCFKLKALPGY-LLEITALEK 566 (607)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~ 566 (607)
++...+. .+++|++|+++++ .+..+ +.. +..+++|++|++++| .++.+|.. +..+++|+.
T Consensus 338 ~~~~~~~-------~l~~L~~L~Ls~N-~l~~~~~~~---------~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~ 399 (455)
T 3v47_A 338 IDSRMFE-------NLDKLEVLDLSYN-HIRALGDQS---------FLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQK 399 (455)
T ss_dssp ECGGGGT-------TCTTCCEEECCSS-CCCEECTTT---------TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCE
T ss_pred cChhHhc-------CcccCCEEECCCC-cccccChhh---------ccccccccEEECCCC-ccccCCHhHhccCCcccE
Confidence 7655553 7899999999998 44444 333 678999999999996 68888854 578999999
Q ss_pred EEEecCc
Q 007330 567 LEILCCP 573 (607)
Q Consensus 567 L~l~~c~ 573 (607)
|++++|+
T Consensus 400 L~l~~N~ 406 (455)
T 3v47_A 400 IWLHTNP 406 (455)
T ss_dssp EECCSSC
T ss_pred EEccCCC
Confidence 9998765
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=1.3e-25 Score=239.66 Aligned_cols=145 Identities=17% Similarity=0.146 Sum_probs=118.1
Q ss_pred eEEEEEeCCCCCccccccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccccc-cccccCccccc
Q 007330 193 RHSMLVLGRRASFPVSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAI-PKEKEKLVHLR 271 (607)
Q Consensus 193 r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~l-p~~~~~l~~L~ 271 (607)
+++.++++.+..+|..+. ++|+.|++++|. .....+..|..+++|++|+++ ++.+..+ |..++.+++|+
T Consensus 3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~Ls------~n~l~~~~~~~~~~l~~L~ 72 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNY--ISELWTSDILSLSKLRILIIS------HNRIQYLDISVFKFNQELE 72 (520)
T ss_dssp CEEECTTSCCSSCCCSCC--TTCSEEECCSSC--CCCCCHHHHTTCTTCCEEECC------SSCCCEEEGGGGTTCTTCC
T ss_pred ceEecCCCCccccccccc--ccccEEECCCCc--ccccChhhccccccccEEecC------CCccCCcChHHhhcccCCC
Confidence 567788888887776665 899999999997 445556678999999999999 8888887 78899999999
Q ss_pred EEecCCCCcccCchhhhcCCcccEeecCCCCCccc--cccccccccCcccccccccccccCcCCCCCCCCCCccCcEEec
Q 007330 272 YLKLSLLMREELPDIVCELFNLQTLEVEHCPRLKR--LPQGIGKLVNLRHLIYYYSNLDYMPKGFERLTCLRTLTEFVVS 349 (607)
Q Consensus 272 ~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~--lp~~i~~l~~L~~L~~~~~~l~~lp~~i~~l~~L~~L~~~~~~ 349 (607)
+|++++|.++.+|.. .+++|++|++++|. +.. +|..++.+++|++|+++.|.+.. ..+..+++| .|..+.++
T Consensus 73 ~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L-~L~~L~l~ 146 (520)
T 2z7x_B 73 YLDLSHNKLVKISCH--PTVNLKHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHL-NISKVLLV 146 (520)
T ss_dssp EEECCSSCCCEEECC--CCCCCSEEECCSSC-CSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTS-CEEEEEEE
T ss_pred EEecCCCceeecCcc--ccCCccEEeccCCc-cccccchhhhccCCcceEEEecCcccch--hhccccccc-eeeEEEee
Confidence 999999999999987 89999999999998 654 67899999999999999988865 345556666 12333355
Q ss_pred CCcc
Q 007330 350 GGKY 353 (607)
Q Consensus 350 ~~~~ 353 (607)
++.+
T Consensus 147 ~n~l 150 (520)
T 2z7x_B 147 LGET 150 (520)
T ss_dssp ECTT
T ss_pred cccc
Confidence 5443
No 19
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=2.9e-25 Score=227.71 Aligned_cols=304 Identities=17% Similarity=0.152 Sum_probs=216.0
Q ss_pred CCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCccccccccccccc-ccccCcccccEEecCCCCcccCchh-hh
Q 007330 211 KAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIP-KEKEKLVHLRYLKLSLLMREELPDI-VC 288 (607)
Q Consensus 211 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~-i~ 288 (607)
.+++++.|++.++. .....+..+..+++|++|+++ ++.+..+| ..++.+++|++|++++|.+..+|+. ++
T Consensus 43 ~l~~l~~l~l~~~~--l~~l~~~~~~~l~~L~~L~L~------~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 114 (390)
T 3o6n_A 43 TLNNQKIVTFKNST--MRKLPAALLDSFRQVELLNLN------DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ 114 (390)
T ss_dssp GGCCCSEEEEESCE--ESEECTHHHHHCCCCSEEECT------TSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred ccCCceEEEecCCc--hhhCChhHhcccccCcEEECC------CCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhc
Confidence 45777777777765 444455556777778888877 66666664 3677777788888877777776543 67
Q ss_pred cCCcccEeecCCCCCcccccccc-ccccCcccccccccccccCcC-CCCCCCCCCccCcEEecCCccCCCcccccccccc
Q 007330 289 ELFNLQTLEVEHCPRLKRLPQGI-GKLVNLRHLIYYYSNLDYMPK-GFERLTCLRTLTEFVVSGGKYSGKACNIEGLRHL 366 (607)
Q Consensus 289 ~L~~L~~L~L~~~~~l~~lp~~i-~~l~~L~~L~~~~~~l~~lp~-~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L 366 (607)
++++|++|++++|. +..+|..+ +.+++|++|+++.|.+..++. .+..+++|+.|. ++++.+... .+..+++|
T Consensus 115 ~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~---l~~n~l~~~--~~~~l~~L 188 (390)
T 3o6n_A 115 NVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ---LSSNRLTHV--DLSLIPSL 188 (390)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEE---CCSSCCSBC--CGGGCTTC
T ss_pred CCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEE---CCCCcCCcc--cccccccc
Confidence 77778888887776 67777664 677778888877777766654 355555555554 666654332 22333333
Q ss_pred cccCceEEEeccCCCCCHhHHHHHHhcCCCCCcceEEEecCCCCCchhcHHHHhhcCCCCCCcceEEEeecCCCCCCChh
Q 007330 367 NHLGGVFRITGLGNVTDVDEAENAELEKKRNVVDLGLWFDKDEEGEEADHEEIIEALKPHSNLVALDILGFKGKITFPKW 446 (607)
Q Consensus 367 ~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~ 446 (607)
+ .+.+.... +. .+....+|+.|+++.|.... ++. ..+++|+.|++++|.+.. +.+
T Consensus 189 ~----~L~l~~n~-l~--------~~~~~~~L~~L~l~~n~l~~--------~~~--~~~~~L~~L~l~~n~l~~--~~~ 243 (390)
T 3o6n_A 189 F----HANVSYNL-LS--------TLAIPIAVEELDASHNSINV--------VRG--PVNVELTILKLQHNNLTD--TAW 243 (390)
T ss_dssp S----EEECCSSC-CS--------EEECCSSCSEEECCSSCCCE--------EEC--CCCSSCCEEECCSSCCCC--CGG
T ss_pred c----eeeccccc-cc--------ccCCCCcceEEECCCCeeee--------ccc--cccccccEEECCCCCCcc--cHH
Confidence 3 44433321 11 12344678889988886532 111 235799999999999887 468
Q ss_pred hhcCCCccEEEEecCCCCCc-CCCCCCCCCCCeeEecCCcCeeeCccccCCCCCCccCCCccceeeeccccccccccccc
Q 007330 447 IMSLNNLKSLHLRSCEKCEI-LSPLGKLPSLETLYIAGMSGKRVGDEFFGIGSDCNIAFPKLKFLRVVDMFEWEEWGFGI 525 (607)
Q Consensus 447 l~~l~~L~~L~L~~~~~~~~-~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 525 (607)
+..+++|++|++++|..... +..+..+++|++|++++|.++.++... ..+++|+.|+++++ .+..++..
T Consensus 244 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--------~~l~~L~~L~L~~n-~l~~~~~~- 313 (390)
T 3o6n_A 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYG--------QPIPTLKVLDLSHN-HLLHVERN- 313 (390)
T ss_dssp GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSS--------SCCTTCCEEECCSS-CCCCCGGG-
T ss_pred HcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCccc--------CCCCCCCEEECCCC-cceecCcc-
Confidence 89999999999999976554 345889999999999999988776543 26899999999998 56666554
Q ss_pred cccCcccccccCCccceeeeecccCccccCCCCCCCCCcCeEEEecCcc
Q 007330 526 TRSNVKEDVMVMPCLNYLDIQFCFKLKALPGYLLEITALEKLEILCCPI 574 (607)
Q Consensus 526 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 574 (607)
+..+++|++|++++| .+..+| +..+++|+.|++++++-
T Consensus 314 --------~~~l~~L~~L~L~~N-~i~~~~--~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 314 --------QPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp --------HHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSCE
T ss_pred --------ccccCcCCEEECCCC-ccceeC--chhhccCCEEEcCCCCc
Confidence 678999999999996 477776 66789999999998864
No 20
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=5.3e-25 Score=232.22 Aligned_cols=313 Identities=19% Similarity=0.163 Sum_probs=188.0
Q ss_pred eEEEEEeCCCCCccccccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccccc-cccccCccccc
Q 007330 193 RHSMLVLGRRASFPVSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAI-PKEKEKLVHLR 271 (607)
Q Consensus 193 r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~l-p~~~~~l~~L~ 271 (607)
+.+...+..+..+|..+ .++++.|++++|. .....+..|..+++|++|+|+ ++.+..+ |..++++++|+
T Consensus 14 ~~v~c~~~~l~~ip~~~--~~~l~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~------~n~i~~~~~~~~~~l~~L~ 83 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI--PTETRLLDLGKNR--IKTLNQDEFASFPHLEELELN------ENIVSAVEPGAFNNLFNLR 83 (477)
T ss_dssp TEEECCSCCCSSCCSCC--CTTCSEEECCSSC--CCEECTTTTTTCTTCCEEECT------TSCCCEECTTTTTTCTTCC
T ss_pred CEEEeCCCCcCcCCCCC--CCCCcEEECCCCc--cceECHhHccCCCCCCEEECC------CCccCEeChhhhhCCccCC
Confidence 34555555566656544 3678899998886 444445668888999999998 7777776 67888899999
Q ss_pred EEecCCCCcccCchh-hhcCCcccEeecCCCCCccccccccccccCcccccccccccccCc-CCCCCCCCCCccCcEEec
Q 007330 272 YLKLSLLMREELPDI-VCELFNLQTLEVEHCPRLKRLPQGIGKLVNLRHLIYYYSNLDYMP-KGFERLTCLRTLTEFVVS 349 (607)
Q Consensus 272 ~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~l~~lp-~~i~~l~~L~~L~~~~~~ 349 (607)
+|+|++|.+..+|.. ++++++|++|+|++|......|..+..+++|++|+++.|.+..++ ..+..+++|+.|. ++
T Consensus 84 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~---l~ 160 (477)
T 2id5_A 84 TLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLT---LE 160 (477)
T ss_dssp EEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEE---EE
T ss_pred EEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEE---CC
Confidence 999999988888865 688999999999998733344667888999999998888887664 3566666666554 66
Q ss_pred CCccCCCcccccccccccccCceEEEeccCCCCCHhHHHHHHhcCCCCCcceEEEecCCCCCchhcHHHHhhcCCCCCCc
Q 007330 350 GGKYSGKACNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAELEKKRNVVDLGLWFDKDEEGEEADHEEIIEALKPHSNL 429 (607)
Q Consensus 350 ~~~~~~~~~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L 429 (607)
++.+...+. ..+..+++|+.|+++.|.... ..+..+..+++|
T Consensus 161 ~n~l~~~~~-------------------------------~~l~~l~~L~~L~l~~n~i~~-------~~~~~~~~l~~L 202 (477)
T 2id5_A 161 KCNLTSIPT-------------------------------EALSHLHGLIVLRLRHLNINA-------IRDYSFKRLYRL 202 (477)
T ss_dssp SCCCSSCCH-------------------------------HHHTTCTTCCEEEEESCCCCE-------ECTTCSCSCTTC
T ss_pred CCcCcccCh-------------------------------hHhcccCCCcEEeCCCCcCcE-------eChhhcccCccc
Confidence 655332221 123344455555555544311 011234455556
Q ss_pred ceEEEeecCCCCCCChhhhcCCCccEEEEecCCCCCcCC-CCCCCCCCCeeEecCCcCeeeCccccCCCCCCccCCCccc
Q 007330 430 VALDILGFKGKITFPKWIMSLNNLKSLHLRSCEKCEILS-PLGKLPSLETLYIAGMSGKRVGDEFFGIGSDCNIAFPKLK 508 (607)
Q Consensus 430 ~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~L~ 508 (607)
+.|++++|.....+|.......+|+.|++++|.....++ .+..+++|+.|+|++|.++.++...+. .+++|+
T Consensus 203 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-------~l~~L~ 275 (477)
T 2id5_A 203 KVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLH-------ELLRLQ 275 (477)
T ss_dssp CEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCT-------TCTTCC
T ss_pred ceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcc-------ccccCC
Confidence 666666555544455544444456666666553322211 245555666666666555555443332 455566
Q ss_pred eeeeccccccccccccccccCcccccccCCccceeeeecccCccccCC-CCCCCCCcCeEEEecCc
Q 007330 509 FLRVVDMFEWEEWGFGITRSNVKEDVMVMPCLNYLDIQFCFKLKALPG-YLLEITALEKLEILCCP 573 (607)
Q Consensus 509 ~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~c~ 573 (607)
.|+++++ .+..+.. ..+..+++|++|++++| .++.+|. .+..+++|+.|++++++
T Consensus 276 ~L~L~~n-~l~~~~~--------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 276 EIQLVGG-QLAVVEP--------YAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp EEECCSS-CCSEECT--------TTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred EEECCCC-ccceECH--------HHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCC
Confidence 6666554 2222211 11445566666666654 4555543 23445566666655543
No 21
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=8.3e-25 Score=220.75 Aligned_cols=297 Identities=16% Similarity=0.141 Sum_probs=219.5
Q ss_pred eEEEecCCCccccccCccCceeEEEEEeCCCCCccccccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCccc
Q 007330 172 YFSIEADGSEESLTKTSLEKFRHSMLVLGRRASFPVSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVS 251 (607)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 251 (607)
............+.-....+++++.+.++.+..++. +..+++|++|++++|. ... ++ .+..+++|++|+++
T Consensus 48 ~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~--i~~-~~-~~~~l~~L~~L~l~---- 118 (347)
T 4fmz_A 48 KLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNK--ITD-IS-ALQNLTNLRELYLN---- 118 (347)
T ss_dssp EEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC--CCC-CG-GGTTCTTCSEEECT----
T ss_pred EEEEeCCccccchhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCc--ccC-ch-HHcCCCcCCEEECc----
Confidence 333333333333333346789999999998887655 8899999999999986 333 33 38899999999999
Q ss_pred ccccccccccccccCcccccEEecCCCCcccCchhhhcCCcccEeecCCCCCccccccccccccCcccccccccccccCc
Q 007330 252 WGQNSIYAIPKEKEKLVHLRYLKLSLLMREELPDIVCELFNLQTLEVEHCPRLKRLPQGIGKLVNLRHLIYYYSNLDYMP 331 (607)
Q Consensus 252 ~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~l~~lp 331 (607)
++.+..+|. +..+++|++|++++|.....+..+..+++|++|++++|. +..++. +..+++|++|+++.|.+..++
T Consensus 119 --~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~-~~~l~~L~~L~l~~n~l~~~~ 193 (347)
T 4fmz_A 119 --EDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP-IANLTDLYSLSLNYNQIEDIS 193 (347)
T ss_dssp --TSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECTTSCCCCCG
T ss_pred --CCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh-hccCCCCCEEEccCCcccccc
Confidence 888888876 889999999999999744444559999999999999998 777764 899999999999999998876
Q ss_pred CCCCCCCCCCccCcEEecCCccCCCcccccccccccccCceEEEeccCCCCCHhHHHHHHhcCCCCCcceEEEecCCCCC
Q 007330 332 KGFERLTCLRTLTEFVVSGGKYSGKACNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAELEKKRNVVDLGLWFDKDEEG 411 (607)
Q Consensus 332 ~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 411 (607)
. +..+++|+.| .++++.+..... +..+++|+.|++++|....
T Consensus 194 ~-~~~l~~L~~L---~l~~n~l~~~~~---------------------------------~~~~~~L~~L~l~~n~l~~- 235 (347)
T 4fmz_A 194 P-LASLTSLHYF---TAYVNQITDITP---------------------------------VANMTRLNSLKIGNNKITD- 235 (347)
T ss_dssp G-GGGCTTCCEE---ECCSSCCCCCGG---------------------------------GGGCTTCCEEECCSSCCCC-
T ss_pred c-ccCCCcccee---ecccCCCCCCch---------------------------------hhcCCcCCEEEccCCccCC-
Confidence 6 4455555544 466665322211 3345566777777665422
Q ss_pred chhcHHHHhhcCCCCCCcceEEEeecCCCCCCChhhhcCCCccEEEEecCCCCCcCCCCCCCCCCCeeEecCCcCeeeCc
Q 007330 412 EEADHEEIIEALKPHSNLVALDILGFKGKITFPKWIMSLNNLKSLHLRSCEKCEILSPLGKLPSLETLYIAGMSGKRVGD 491 (607)
Q Consensus 412 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~ 491 (607)
.+. +..+++|+.|++++|.... + ..+..+++|+.|++++|.. ..++.+..+++|+.|++++|.+...+.
T Consensus 236 -------~~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~L~~n~l~~~~~ 304 (347)
T 4fmz_A 236 -------LSP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQI-SDISVLNNLSQLNSLFLNNNQLGNEDM 304 (347)
T ss_dssp -------CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCC-CCCGGGGGCTTCSEEECCSSCCCGGGH
T ss_pred -------Ccc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCcc-CCChhhcCCCCCCEEECcCCcCCCcCh
Confidence 111 6678899999999988876 4 4577889999999999853 345667888999999999998665544
Q ss_pred cccCCCCCCccCCCccceeeeccccccccccccccccCcccccccCCccceeeeeccc
Q 007330 492 EFFGIGSDCNIAFPKLKFLRVVDMFEWEEWGFGITRSNVKEDVMVMPCLNYLDIQFCF 549 (607)
Q Consensus 492 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 549 (607)
..+ ..+++|++|++++++ +..++. +..+++|++|++++|+
T Consensus 305 ~~l-------~~l~~L~~L~L~~n~-l~~~~~----------~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 305 EVI-------GGLTNLTTLFLSQNH-ITDIRP----------LASLSKMDSADFANQV 344 (347)
T ss_dssp HHH-------HTCTTCSEEECCSSS-CCCCGG----------GGGCTTCSEESSSCC-
T ss_pred hHh-------hccccCCEEEccCCc-cccccC----------hhhhhccceeehhhhc
Confidence 433 368899999999985 443321 4488999999999875
No 22
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.93 E-value=1.3e-25 Score=247.71 Aligned_cols=382 Identities=15% Similarity=0.107 Sum_probs=238.4
Q ss_pred cCceeEEEEEeCCCCCccc-cccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccccccc-cccC
Q 007330 189 LEKFRHSMLVLGRRASFPV-SIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIPK-EKEK 266 (607)
Q Consensus 189 ~~~~r~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp~-~~~~ 266 (607)
+.+++++.+.++.+..++. .+.++++|++|++++|. .....+..+..+++|++|+++ ++.+..+|. .++.
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~------~n~l~~l~~~~~~~ 95 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT--ISKLEPELCQKLPMLKVLNLQ------HNELSQLSDKTFAF 95 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSC--CCCCCTTHHHHCTTCCEEECC------SSCCCCCCTTTTTT
T ss_pred CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCc--cCccCHHHHhcccCcCEEECC------CCccCccChhhhcc
Confidence 5789999999998887654 58899999999999986 445557778999999999999 888888876 5999
Q ss_pred cccccEEecCCCCcccCc-hhhhcCCcccEeecCCCCCccccccccccccCcccccccccccccCcCC-C--CCCCCCCc
Q 007330 267 LVHLRYLKLSLLMREELP-DIVCELFNLQTLEVEHCPRLKRLPQGIGKLVNLRHLIYYYSNLDYMPKG-F--ERLTCLRT 342 (607)
Q Consensus 267 l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~l~~lp~~-i--~~l~~L~~ 342 (607)
+++|++|++++|.+..+| ..++++++|++|++++|......|..++++++|++|+++.|.+..++.. + ..+++|+.
T Consensus 96 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~ 175 (680)
T 1ziw_A 96 CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK 175 (680)
T ss_dssp CTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESE
T ss_pred CCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccE
Confidence 999999999999998887 4699999999999999984445566789999999999999988877653 2 23344554
Q ss_pred cCcEEecCCccCCCcc-cccccccccccCceEEEeccCCCCCHhHHHH-----------------------HHhcCC--C
Q 007330 343 LTEFVVSGGKYSGKAC-NIEGLRHLNHLGGVFRITGLGNVTDVDEAEN-----------------------AELEKK--R 396 (607)
Q Consensus 343 L~~~~~~~~~~~~~~~-~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~-----------------------~~l~~~--~ 396 (607)
| +++.+.+.+... .+..+.+|+ .+.+.............. ..+..+ +
T Consensus 176 L---~L~~n~l~~~~~~~~~~l~~L~----~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~ 248 (680)
T 1ziw_A 176 L---ELSSNQIKEFSPGCFHAIGRLF----GLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWT 248 (680)
T ss_dssp E---ECTTCCCCCBCTTGGGGSSEEC----EEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGS
T ss_pred E---ECCCCcccccChhhhhhhhhhh----hhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcC
Confidence 4 477776554432 233444443 333222110000000000 011111 2
Q ss_pred CCcceEEEecCCCCCchhcHHHHhhcCCCCCCcceEEEeecCCCCCCChhhhcCCCccEEEEecCCCCC-----cCC---
Q 007330 397 NVVDLGLWFDKDEEGEEADHEEIIEALKPHSNLVALDILGFKGKITFPKWIMSLNNLKSLHLRSCEKCE-----ILS--- 468 (607)
Q Consensus 397 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~-----~~~--- 468 (607)
+|+.|+++.|.... ..+..+..+++|+.|++++|...+..|.++..+++|+.|++++|.... .++
T Consensus 249 ~L~~L~Ls~n~l~~-------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~ 321 (680)
T 1ziw_A 249 NLTMLDLSYNNLNV-------VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKID 321 (680)
T ss_dssp CCCEEECTTSCCCE-------ECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEEC
T ss_pred CCCEEECCCCCcCc-------cCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccC
Confidence 25555555444311 112345566677777777666665455566666667777666553221 112
Q ss_pred --CCCCCCCCCeeEecCCcCeeeCccccCCCCCCccCCCccceeeeccccc-ccccccc------------c-----ccc
Q 007330 469 --PLGKLPSLETLYIAGMSGKRVGDEFFGIGSDCNIAFPKLKFLRVVDMFE-WEEWGFG------------I-----TRS 528 (607)
Q Consensus 469 --~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-l~~~~~~------------~-----~~~ 528 (607)
.++.+++|++|++++|.+..++...+ ..+++|++|+++++.. +..++.. + .+.
T Consensus 322 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~-------~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~ 394 (680)
T 1ziw_A 322 DFSFQWLKCLEHLNMEDNDIPGIKSNMF-------TGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKIS 394 (680)
T ss_dssp TTTTTTCTTCCEEECCSCCBCCCCTTTT-------TTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCC
T ss_pred hhhcccCCCCCEEECCCCccCCCChhHh-------ccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCC
Confidence 35567777777777776555544433 2567777777766531 1111100 0 000
Q ss_pred C-cccccccCCccceeeeecccCccccC-CCCCCCCCcCeEEEecCcchhHhhhcCCCCCCCcccccCeeEeCceEee
Q 007330 529 N-VKEDVMVMPCLNYLDIQFCFKLKALP-GYLLEITALEKLEILCCPILEQRYRKGTGEDWAKVAHVPTITINRQYVQ 604 (607)
Q Consensus 529 ~-~~~~~~~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ip~~~~~~~~~~ 604 (607)
. .+..+..+++|+.|++++|.....+| ..+..+++|+.|++++|.-. ......+.....+..+.+.++.+.
T Consensus 395 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~-----~~~~~~~~~~~~L~~L~l~~n~l~ 467 (680)
T 1ziw_A 395 KIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL-----QLTRNSFALVPSLQRLMLRRVALK 467 (680)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEE-----ECCTTTTTTCTTCCEEECTTSCCB
T ss_pred eEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcc-----eeChhhhhcCcccccchhcccccc
Confidence 1 12345667777777777765434455 45666777777777777521 112233445566666676665543
No 23
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.92 E-value=5.9e-26 Score=245.35 Aligned_cols=147 Identities=22% Similarity=0.180 Sum_probs=118.4
Q ss_pred EEEEEeCCCCCccccccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccccc-cccccCcccccE
Q 007330 194 HSMLVLGRRASFPVSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAI-PKEKEKLVHLRY 272 (607)
Q Consensus 194 ~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~l-p~~~~~l~~L~~ 272 (607)
.+...+.....+|..+ .+++++|++++|. .....+..|..+++|++|+++ ++.+..+ |..++++++|++
T Consensus 11 ~~~c~~~~l~~ip~~l--~~~l~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls------~n~i~~i~~~~~~~l~~L~~ 80 (570)
T 2z63_A 11 TYQCMELNFYKIPDNL--PFSTKNLDLSFNP--LRHLGSYSFFSFPELQVLDLS------RCEIQTIEDGAYQSLSHLST 80 (570)
T ss_dssp EEECCSSCCSSCCSSS--CSSCCEEECCSCC--CCEECTTTTTTCSSCCEEECT------TCCCCEECTTTTTTCTTCCE
T ss_pred EEEeCCCCccccCCCc--cccccEEEccCCc--cCccChhHhhCCCCceEEECC------CCcCCccCcccccCchhCCE
Confidence 3444444555556544 3689999999997 444455568999999999999 7788877 466899999999
Q ss_pred EecCCCCcccCc-hhhhcCCcccEeecCCCCCcccccc-ccccccCccccccccccccc--CcCCCCCCCCCCccCcEEe
Q 007330 273 LKLSLLMREELP-DIVCELFNLQTLEVEHCPRLKRLPQ-GIGKLVNLRHLIYYYSNLDY--MPKGFERLTCLRTLTEFVV 348 (607)
Q Consensus 273 L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~~~~~~l~~--lp~~i~~l~~L~~L~~~~~ 348 (607)
|++++|.+..+| ..++++++|++|++++|. +..+|. .++++++|++|+++.|.+.. +|..++++++|++|. +
T Consensus 81 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~---l 156 (570)
T 2z63_A 81 LILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD---L 156 (570)
T ss_dssp EECTTCCCCEECTTTTTTCTTCCEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE---C
T ss_pred EeCcCCcCCccCHhhhcCccccccccccccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEe---C
Confidence 999999998887 569999999999999997 888775 58999999999999999875 688888888888776 6
Q ss_pred cCCccC
Q 007330 349 SGGKYS 354 (607)
Q Consensus 349 ~~~~~~ 354 (607)
+++.+.
T Consensus 157 ~~n~l~ 162 (570)
T 2z63_A 157 SSNKIQ 162 (570)
T ss_dssp TTSCCC
T ss_pred cCCccc
Confidence 655543
No 24
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=1.8e-24 Score=227.14 Aligned_cols=322 Identities=18% Similarity=0.204 Sum_probs=250.0
Q ss_pred ccCceeEEEEEeCCCCCccccccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccccccccccCc
Q 007330 188 SLEKFRHSMLVLGRRASFPVSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIPKEKEKL 267 (607)
Q Consensus 188 ~~~~~r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp~~~~~l 267 (607)
....++++.+.++.+..++. +..+++|+.|++++|. ... .+. +..+++|++|+++ ++.+..+|. ++.+
T Consensus 66 ~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~--l~~-~~~-~~~l~~L~~L~L~------~n~l~~~~~-~~~l 133 (466)
T 1o6v_A 66 YLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQ--IAD-ITP-LANLTNLTGLTLF------NNQITDIDP-LKNL 133 (466)
T ss_dssp GCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC--CCC-CGG-GTTCTTCCEEECC------SSCCCCCGG-GTTC
T ss_pred hhcCCCEEECCCCccCCchh-hhccccCCEEECCCCc--ccc-Chh-hcCCCCCCEEECC------CCCCCCChH-HcCC
Confidence 36789999999999888665 8899999999999986 333 233 8899999999999 788888865 8999
Q ss_pred ccccEEecCCCCcccCchhhhcCCcccEeecCCCCCccccccccccccCcccccccccccccCcCCCCCCCCCCccCcEE
Q 007330 268 VHLRYLKLSLLMREELPDIVCELFNLQTLEVEHCPRLKRLPQGIGKLVNLRHLIYYYSNLDYMPKGFERLTCLRTLTEFV 347 (607)
Q Consensus 268 ~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~l~~lp~~i~~l~~L~~L~~~~ 347 (607)
++|++|++++|.+..+|. ++++++|++|++++ . +..++ .++.+++|++|+++.+.+..++. +..+++|+.|.
T Consensus 134 ~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~-~-~~~~~-~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~--- 205 (466)
T 1o6v_A 134 TNLNRLELSSNTISDISA-LSGLTSLQQLSFGN-Q-VTDLK-PLANLTTLERLDISSNKVSDISV-LAKLTNLESLI--- 205 (466)
T ss_dssp TTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEE-S-CCCCG-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEE---
T ss_pred CCCCEEECCCCccCCChh-hccCCcccEeecCC-c-ccCch-hhccCCCCCEEECcCCcCCCChh-hccCCCCCEEE---
Confidence 999999999999998875 89999999999974 3 55555 48999999999999998887753 55566555554
Q ss_pred ecCCccCCCcccccccccccccCceEEEeccCCCCCHhHHHHHHhcCCCCCcceEEEecCCCCCchhcHHHHhhcCCCCC
Q 007330 348 VSGGKYSGKACNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAELEKKRNVVDLGLWFDKDEEGEEADHEEIIEALKPHS 427 (607)
Q Consensus 348 ~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~ 427 (607)
++++.+.+... +.. ++.|+ .+.+.+.. +... ..+..+++|+.|+++.|..... + .+..++
T Consensus 206 l~~n~l~~~~~-~~~---l~~L~-~L~l~~n~-l~~~-----~~l~~l~~L~~L~l~~n~l~~~--------~-~~~~l~ 265 (466)
T 1o6v_A 206 ATNNQISDITP-LGI---LTNLD-ELSLNGNQ-LKDI-----GTLASLTNLTDLDLANNQISNL--------A-PLSGLT 265 (466)
T ss_dssp CCSSCCCCCGG-GGG---CTTCC-EEECCSSC-CCCC-----GGGGGCTTCSEEECCSSCCCCC--------G-GGTTCT
T ss_pred ecCCccccccc-ccc---cCCCC-EEECCCCC-cccc-----hhhhcCCCCCEEECCCCccccc--------h-hhhcCC
Confidence 77777554433 333 44444 66666543 2222 3567889999999999876321 1 267889
Q ss_pred CcceEEEeecCCCCCCChhhhcCCCccEEEEecCCCCCcCCCCCCCCCCCeeEecCCcCeeeCccccCCCCCCccCCCcc
Q 007330 428 NLVALDILGFKGKITFPKWIMSLNNLKSLHLRSCEKCEILSPLGKLPSLETLYIAGMSGKRVGDEFFGIGSDCNIAFPKL 507 (607)
Q Consensus 428 ~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~L 507 (607)
+|+.|++++|.... +|. +..+++|+.|++++|... .++.++.+++|+.|++++|.+..++. + ..+++|
T Consensus 266 ~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~L~L~~n~l~~~~~--~-------~~l~~L 333 (466)
T 1o6v_A 266 KLTELKLGANQISN-ISP-LAGLTALTNLELNENQLE-DISPISNLKNLTYLTLYFNNISDISP--V-------SSLTKL 333 (466)
T ss_dssp TCSEEECCSSCCCC-CGG-GTTCTTCSEEECCSSCCS-CCGGGGGCTTCSEEECCSSCCSCCGG--G-------GGCTTC
T ss_pred CCCEEECCCCccCc-ccc-ccCCCccCeEEcCCCccc-CchhhcCCCCCCEEECcCCcCCCchh--h-------ccCccC
Confidence 99999999999887 665 788999999999999644 44458899999999999998665543 1 378999
Q ss_pred ceeeeccccccccccccccccCcccccccCCccceeeeecccCccccCCCCCCCCCcCeEEEecCcc
Q 007330 508 KFLRVVDMFEWEEWGFGITRSNVKEDVMVMPCLNYLDIQFCFKLKALPGYLLEITALEKLEILCCPI 574 (607)
Q Consensus 508 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 574 (607)
+.|+++++ .+..++ . +..+++|+.|++++|+ +..++. +..+++|+.|++++|+-
T Consensus 334 ~~L~l~~n-~l~~~~-~---------l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 334 QRLFFYNN-KVSDVS-S---------LANLTNINWLSAGHNQ-ISDLTP-LANLTRITQLGLNDQAW 387 (466)
T ss_dssp CEEECCSS-CCCCCG-G---------GTTCTTCCEEECCSSC-CCBCGG-GTTCTTCCEEECCCEEE
T ss_pred CEeECCCC-ccCCch-h---------hccCCCCCEEeCCCCc-cCccch-hhcCCCCCEEeccCCcc
Confidence 99999998 454442 2 6689999999999975 555554 77899999999998853
No 25
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.92 E-value=1.5e-24 Score=233.06 Aligned_cols=369 Identities=17% Similarity=0.140 Sum_probs=226.2
Q ss_pred EeCCCCCccccccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCccccccccccccc-ccccCcccccEEecC
Q 007330 198 VLGRRASFPVSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIP-KEKEKLVHLRYLKLS 276 (607)
Q Consensus 198 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp-~~~~~l~~L~~L~L~ 276 (607)
..+.+..+|..+. ++|++|++++|. .....+..|..+++|++|+++ ++.+..++ ..++.+++|++|+++
T Consensus 13 ~~~~l~~ip~~~~--~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls------~n~i~~~~~~~~~~l~~L~~L~Ls 82 (549)
T 2z81_A 13 RSRSFTSIPSGLT--AAMKSLDLSFNK--ITYIGHGDLRACANLQVLILK------SSRINTIEGDAFYSLGSLEHLDLS 82 (549)
T ss_dssp TTSCCSSCCSCCC--TTCCEEECCSSC--CCEECSSTTSSCTTCCEEECT------TSCCCEECTTTTTTCTTCCEEECT
T ss_pred CCCccccccccCC--CCccEEECcCCc--cCccChhhhhcCCcccEEECC------CCCcCccChhhccccccCCEEECC
Confidence 3445566666553 799999999997 444455668999999999999 78887775 679999999999999
Q ss_pred CCCcccCchh-hhcCCcccEeecCCCCCcc--ccccccccccCcccccccccc-cccCc-CCCCCCCCCCccCcEEecCC
Q 007330 277 LLMREELPDI-VCELFNLQTLEVEHCPRLK--RLPQGIGKLVNLRHLIYYYSN-LDYMP-KGFERLTCLRTLTEFVVSGG 351 (607)
Q Consensus 277 ~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~--~lp~~i~~l~~L~~L~~~~~~-l~~lp-~~i~~l~~L~~L~~~~~~~~ 351 (607)
+|.+..+|+. ++++++|++|++++|. +. ..|..++++++|++|+++.|. +..+| ..+..+++|+.|. ++++
T Consensus 83 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~---L~~n 158 (549)
T 2z81_A 83 DNHLSSLSSSWFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELE---IKAL 158 (549)
T ss_dssp TSCCCSCCHHHHTTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE---EEET
T ss_pred CCccCccCHHHhccCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeee---ccCC
Confidence 9999998876 9999999999999998 66 457789999999999988877 66776 4677777777666 6666
Q ss_pred ccCCC-cccccccccccccCceEEEeccCCCCCHhHHHHHHhcCCCCCcceEEEecCCCCCc------------------
Q 007330 352 KYSGK-ACNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAELEKKRNVVDLGLWFDKDEEGE------------------ 412 (607)
Q Consensus 352 ~~~~~-~~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~------------------ 412 (607)
.+.+. +..+..+++|+ .+.+..... ... ....+..+++|+.|+++.|......
T Consensus 159 ~l~~~~~~~l~~l~~L~----~L~l~~n~~-~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l 230 (549)
T 2z81_A 159 SLRNYQSQSLKSIRDIH----HLTLHLSES-AFL---LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAF 230 (549)
T ss_dssp TCCEECTTTTTTCSEEE----EEEEECSBS-TTH---HHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEE
T ss_pred cccccChhhhhccccCc----eEecccCcc-ccc---chhhHhhcccccEEEccCCccccccccccchhhhhhcccceec
Confidence 55432 23344444444 444444321 111 1122334566666666665443210
Q ss_pred ------hhcHHHHhhcC------------------------------C-----------------------------CCC
Q 007330 413 ------EADHEEIIEAL------------------------------K-----------------------------PHS 427 (607)
Q Consensus 413 ------~~~~~~~~~~l------------------------------~-----------------------------~~~ 427 (607)
......+...+ . ...
T Consensus 231 ~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~ 310 (549)
T 2z81_A 231 RGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLE 310 (549)
T ss_dssp ESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHST
T ss_pred cccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcc
Confidence 00000111000 0 123
Q ss_pred CcceEEEeecCCCCCCChhhh-cCCCccEEEEecCCCCCc----CCCCCCCCCCCeeEecCCcCeeeCc--cccCCCCCC
Q 007330 428 NLVALDILGFKGKITFPKWIM-SLNNLKSLHLRSCEKCEI----LSPLGKLPSLETLYIAGMSGKRVGD--EFFGIGSDC 500 (607)
Q Consensus 428 ~L~~L~l~~~~~~~~lp~~l~-~l~~L~~L~L~~~~~~~~----~~~l~~l~~L~~L~L~~~~~~~~~~--~~~~~~~~~ 500 (607)
+|+.|++++|.... +|.++. .+++|+.|++++|..... ...++.+++|++|++++|.++.++. ..+
T Consensus 311 ~L~~L~l~~n~l~~-ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------ 383 (549)
T 2z81_A 311 KVKRITVENSKVFL-VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL------ 383 (549)
T ss_dssp TCCEEEEESSCCCC-CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHG------
T ss_pred cceEEEeccCcccc-CCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhh------
Confidence 56677777776655 777763 688888888888865442 2235677777777777777654432 111
Q ss_pred ccCCCccceeeeccccccccccccc--------------------------------cccCcccccccCCccceeeeecc
Q 007330 501 NIAFPKLKFLRVVDMFEWEEWGFGI--------------------------------TRSNVKEDVMVMPCLNYLDIQFC 548 (607)
Q Consensus 501 ~~~~~~L~~L~l~~~~~l~~~~~~~--------------------------------~~~~~~~~~~~~~~L~~L~l~~c 548 (607)
..+++|++|+++++ .++.++..+ +...+......+++|++|++++|
T Consensus 384 -~~l~~L~~L~Ls~N-~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N 461 (549)
T 2z81_A 384 -LTLKNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN 461 (549)
T ss_dssp -GGCTTCCEEECTTC-CCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS
T ss_pred -hcCCCCCEEECCCC-CCccCChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCC
Confidence 14455555555554 333332210 00000111235666666666664
Q ss_pred cCccccCCCCCCCCCcCeEEEecCcchhHhhhcCCCCCCCcccccCeeEeCceEee
Q 007330 549 FKLKALPGYLLEITALEKLEILCCPILEQRYRKGTGEDWAKVAHVPTITINRQYVQ 604 (607)
Q Consensus 549 ~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ip~~~~~~~~~~ 604 (607)
+++.+|. ...+++|+.|++++|. ++. .....+.....+..+.+.+|.+.
T Consensus 462 -~l~~ip~-~~~l~~L~~L~Ls~N~-l~~----~~~~~~~~l~~L~~L~l~~N~~~ 510 (549)
T 2z81_A 462 -KLKTLPD-ASLFPVLLVMKISRNQ-LKS----VPDGIFDRLTSLQKIWLHTNPWD 510 (549)
T ss_dssp -CCSSCCC-GGGCTTCCEEECCSSC-CCC----CCTTGGGGCTTCCEEECCSSCBC
T ss_pred -ccCcCCC-cccCccCCEEecCCCc-cCC----cCHHHHhcCcccCEEEecCCCcc
Confidence 4556665 3446667777776663 221 11112345566666777776653
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=2e-24 Score=232.41 Aligned_cols=341 Identities=14% Similarity=0.074 Sum_probs=241.8
Q ss_pred cCceeEEEEEeCCCCCcc-ccccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccccccccccCc
Q 007330 189 LEKFRHSMLVLGRRASFP-VSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIPKEKEKL 267 (607)
Q Consensus 189 ~~~~r~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp~~~~~l 267 (607)
+.+++++.+.++.+..++ ..+..+++|++|++++|. .....+..|..+++|++|+++ ++.++.+|.. .+
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~Ls------~N~l~~lp~~--~l 120 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR--IRSLDFHVFLFNQDLEYLDVS------HNRLQNISCC--PM 120 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCC--CCEECTTTTTTCTTCCEEECT------TSCCCEECSC--CC
T ss_pred CCCcCEEECCCCCccccChhhhccCCCccEEECCCCC--CCcCCHHHhCCCCCCCEEECC------CCcCCccCcc--cc
Confidence 578999999999988765 588999999999999997 555556778999999999999 8889999877 89
Q ss_pred ccccEEecCCCCcccCc--hhhhcCCcccEeecCCCCCccccccccccccCc--cccccccccc--c-cCcCCCCCCC--
Q 007330 268 VHLRYLKLSLLMREELP--DIVCELFNLQTLEVEHCPRLKRLPQGIGKLVNL--RHLIYYYSNL--D-YMPKGFERLT-- 338 (607)
Q Consensus 268 ~~L~~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L--~~L~~~~~~l--~-~lp~~i~~l~-- 338 (607)
++|++|++++|.+..+| ..++++++|++|++++|. +.. ..+..+++| ++|+++.|.+ . ..|..+..+.
T Consensus 121 ~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~ 197 (562)
T 3a79_B 121 ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQ--LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTT 197 (562)
T ss_dssp TTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCT--TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEE
T ss_pred ccCCEEECCCCCccccCchHhhcccCcccEEecCCCc-ccc--CchhhhhhceeeEEEeecccccccccCcccccccCcc
Confidence 99999999999998865 689999999999999987 554 245566666 8888877766 2 2233332222
Q ss_pred ---------------------CCCccCcEEecCC----------------------------------------------
Q 007330 339 ---------------------CLRTLTEFVVSGG---------------------------------------------- 351 (607)
Q Consensus 339 ---------------------~L~~L~~~~~~~~---------------------------------------------- 351 (607)
++..|..++++.+
T Consensus 198 ~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~ 277 (562)
T 3a79_B 198 VLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRP 277 (562)
T ss_dssp EEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSS
T ss_pred eEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhccc
Confidence 1222222223222
Q ss_pred ---------ccC-CCccccc--ccccccccCceEEEeccCCCCCHhHHHHHHh----------------------cCCCC
Q 007330 352 ---------KYS-GKACNIE--GLRHLNHLGGVFRITGLGNVTDVDEAENAEL----------------------EKKRN 397 (607)
Q Consensus 352 ---------~~~-~~~~~~~--~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l----------------------~~~~~ 397 (607)
.+. ..+..+. ...+|+.|. ...+.... + .........+ ..+++
T Consensus 278 L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~-~~~~~~~~-~-~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~ 354 (562)
T 3a79_B 278 VEYLNIYNLTITERIDREEFTYSETALKSLM-IEHVKNQV-F-LFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSS 354 (562)
T ss_dssp EEEEEEEEEEECSCCCCCCCCCCSCSCCEEE-EEEEEECC-C-SSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCC
T ss_pred ccEEEEeccEeeccccchhhhcccccchhee-hhhcccce-e-ecChhhhhhhhccCcceEEEccCCCcccccCccCCCC
Confidence 111 1111110 001122111 11111100 0 1111111111 56678
Q ss_pred CcceEEEecCCCCCchhcHHHHhhcCCCCCCcceEEEeecCCCCCCC---hhhhcCCCccEEEEecCCCCCcCC--CCCC
Q 007330 398 VVDLGLWFDKDEEGEEADHEEIIEALKPHSNLVALDILGFKGKITFP---KWIMSLNNLKSLHLRSCEKCEILS--PLGK 472 (607)
Q Consensus 398 L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp---~~l~~l~~L~~L~L~~~~~~~~~~--~l~~ 472 (607)
|+.|+++.|... +..+..+..+++|+.|++++|.+.+ ++ ..+..+++|+.|++++|.....++ .+..
T Consensus 355 L~~L~l~~n~l~-------~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~ 426 (562)
T 3a79_B 355 FTFLNFTQNVFT-------DSVFQGCSTLKRLQTLILQRNGLKN-FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW 426 (562)
T ss_dssp CCEEECCSSCCC-------TTTTTTCCSCSSCCEEECCSSCCCB-TTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCC
T ss_pred ceEEECCCCccc-------cchhhhhcccCCCCEEECCCCCcCC-cccchhhhcCCCCCCEEECCCCcCCCccChhhhcC
Confidence 888888877652 2456778899999999999999887 54 457799999999999997665333 3778
Q ss_pred CCCCCeeEecCCcCeeeCccccCCCCCCccCC-CccceeeeccccccccccccccccCcccccccCCccceeeeecccCc
Q 007330 473 LPSLETLYIAGMSGKRVGDEFFGIGSDCNIAF-PKLKFLRVVDMFEWEEWGFGITRSNVKEDVMVMPCLNYLDIQFCFKL 551 (607)
Q Consensus 473 l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l 551 (607)
+++|++|++++|.++. ..+ ..+ ++|+.|+++++ .++.++.+ +..+++|++|++++| .+
T Consensus 427 l~~L~~L~l~~n~l~~---~~~-------~~l~~~L~~L~L~~N-~l~~ip~~---------~~~l~~L~~L~L~~N-~l 485 (562)
T 3a79_B 427 AESILVLNLSSNMLTG---SVF-------RCLPPKVKVLDLHNN-RIMSIPKD---------VTHLQALQELNVASN-QL 485 (562)
T ss_dssp CTTCCEEECCSSCCCG---GGG-------SSCCTTCSEEECCSS-CCCCCCTT---------TTSSCCCSEEECCSS-CC
T ss_pred cccCCEEECCCCCCCc---chh-------hhhcCcCCEEECCCC-cCcccChh---------hcCCCCCCEEECCCC-CC
Confidence 9999999999998542 111 134 69999999998 67777765 668999999999995 68
Q ss_pred cccCCC-CCCCCCcCeEEEecCcc
Q 007330 552 KALPGY-LLEITALEKLEILCCPI 574 (607)
Q Consensus 552 ~~lp~~-~~~l~~L~~L~l~~c~~ 574 (607)
+.+|.. +..+++|+.|+++++|-
T Consensus 486 ~~l~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 486 KSVPDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp CCCCTTSTTTCTTCCCEECCSCCB
T ss_pred CCCCHHHHhcCCCCCEEEecCCCc
Confidence 899987 88899999999998763
No 27
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=1.4e-24 Score=235.04 Aligned_cols=304 Identities=17% Similarity=0.155 Sum_probs=226.0
Q ss_pred CCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCccccccccccccc-ccccCcccccEEecCCCCcccCchh-hh
Q 007330 211 KAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIP-KEKEKLVHLRYLKLSLLMREELPDI-VC 288 (607)
Q Consensus 211 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~-i~ 288 (607)
.+++++.|.+.++. ....++..+..+++|++|+++ ++.+..+| ..++.+++|++|+|++|.+..+|+. ++
T Consensus 49 ~l~~l~~l~l~~~~--l~~lp~~~~~~l~~L~~L~L~------~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 120 (597)
T 3oja_B 49 TLNNQKIVTFKNST--MRKLPAALLDSFRQVELLNLN------DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ 120 (597)
T ss_dssp GGCCCSEEEESSCE--ESEECTHHHHHCCCCSEEECT------TSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cCCCceEEEeeCCC--CCCcCHHHHccCCCCcEEECC------CCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHc
Confidence 46778888888775 445556667788888888888 67777764 4788888888888888888777664 58
Q ss_pred cCCcccEeecCCCCCcccccccc-ccccCcccccccccccccCcC-CCCCCCCCCccCcEEecCCccCCCcccccccccc
Q 007330 289 ELFNLQTLEVEHCPRLKRLPQGI-GKLVNLRHLIYYYSNLDYMPK-GFERLTCLRTLTEFVVSGGKYSGKACNIEGLRHL 366 (607)
Q Consensus 289 ~L~~L~~L~L~~~~~l~~lp~~i-~~l~~L~~L~~~~~~l~~lp~-~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L 366 (607)
++++|++|+|++|. +..+|..+ +.+++|++|+++.|.+..+++ .++.+++|+.|. ++++.+.+. .+..+++|
T Consensus 121 ~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~---L~~N~l~~~--~~~~l~~L 194 (597)
T 3oja_B 121 NVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ---LSSNRLTHV--DLSLIPSL 194 (597)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE---CTTSCCSBC--CGGGCTTC
T ss_pred CCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEE---CcCCCCCCc--Chhhhhhh
Confidence 88888888888886 77777664 788888888888888877655 466666666655 677665433 23333443
Q ss_pred cccCceEEEeccCCCCCHhHHHHHHhcCCCCCcceEEEecCCCCCchhcHHHHhhcCCCCCCcceEEEeecCCCCCCChh
Q 007330 367 NHLGGVFRITGLGNVTDVDEAENAELEKKRNVVDLGLWFDKDEEGEEADHEEIIEALKPHSNLVALDILGFKGKITFPKW 446 (607)
Q Consensus 367 ~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~ 446 (607)
. .+.+.+.. +. .+....+|+.|++++|.... ++. ..+++|+.|++++|.+.. +.+
T Consensus 195 ~----~L~l~~n~-l~--------~l~~~~~L~~L~ls~n~l~~--------~~~--~~~~~L~~L~L~~n~l~~--~~~ 249 (597)
T 3oja_B 195 F----HANVSYNL-LS--------TLAIPIAVEELDASHNSINV--------VRG--PVNVELTILKLQHNNLTD--TAW 249 (597)
T ss_dssp S----EEECCSSC-CS--------EEECCTTCSEEECCSSCCCE--------EEC--SCCSCCCEEECCSSCCCC--CGG
T ss_pred h----hhhcccCc-cc--------cccCCchhheeeccCCcccc--------ccc--ccCCCCCEEECCCCCCCC--Chh
Confidence 3 44443321 11 13445688999998887532 111 124689999999999887 678
Q ss_pred hhcCCCccEEEEecCCCCCcC-CCCCCCCCCCeeEecCCcCeeeCccccCCCCCCccCCCccceeeeccccccccccccc
Q 007330 447 IMSLNNLKSLHLRSCEKCEIL-SPLGKLPSLETLYIAGMSGKRVGDEFFGIGSDCNIAFPKLKFLRVVDMFEWEEWGFGI 525 (607)
Q Consensus 447 l~~l~~L~~L~L~~~~~~~~~-~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 525 (607)
+..+++|+.|+|++|.....+ ..++.+++|+.|+|++|.+..++... ..+|+|+.|+++++ .+..++..
T Consensus 250 l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~--------~~l~~L~~L~Ls~N-~l~~i~~~- 319 (597)
T 3oja_B 250 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYG--------QPIPTLKVLDLSHN-HLLHVERN- 319 (597)
T ss_dssp GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSS--------SCCTTCCEEECCSS-CCCCCGGG-
T ss_pred hccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCccc--------ccCCCCcEEECCCC-CCCccCcc-
Confidence 999999999999999766553 45889999999999999988776543 26899999999998 55556554
Q ss_pred cccCcccccccCCccceeeeecccCccccCCCCCCCCCcCeEEEecCcc
Q 007330 526 TRSNVKEDVMVMPCLNYLDIQFCFKLKALPGYLLEITALEKLEILCCPI 574 (607)
Q Consensus 526 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 574 (607)
+..+++|+.|++++| .+..+| +..+++|+.|++++|+-
T Consensus 320 --------~~~l~~L~~L~L~~N-~l~~~~--~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 320 --------QPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp --------HHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSCE
T ss_pred --------cccCCCCCEEECCCC-CCCCcC--hhhcCCCCEEEeeCCCC
Confidence 678999999999997 477776 56789999999999874
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=2.3e-24 Score=226.06 Aligned_cols=366 Identities=15% Similarity=0.156 Sum_probs=256.9
Q ss_pred EEEEEeCCCCCccccccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccc-cc-cccccCccccc
Q 007330 194 HSMLVLGRRASFPVSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIY-AI-PKEKEKLVHLR 271 (607)
Q Consensus 194 ~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~-~l-p~~~~~l~~L~ 271 (607)
.+...+..+..+|. -.++|++|++++|. .....+..+..+++|++|+++ ++.+. .+ |..++.+++|+
T Consensus 14 ~~~c~~~~l~~lp~---l~~~l~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~L~------~n~~~~~i~~~~~~~l~~L~ 82 (455)
T 3v47_A 14 NAICINRGLHQVPE---LPAHVNYVDLSLNS--IAELNETSFSRLQDLQFLKVE------QQTPGLVIRNNTFRGLSSLI 82 (455)
T ss_dssp EEECCSSCCSSCCC---CCTTCCEEECCSSC--CCEECTTTTSSCTTCCEEECC------CCSTTCEECTTTTTTCTTCC
T ss_pred ccCcCCCCcccCCC---CCCccCEEEecCCc--cCcCChhHhccCccccEEECc------CCcccceECcccccccccCC
Confidence 34455555666555 24889999999997 445556678999999999999 66664 45 56789999999
Q ss_pred EEecCCCCcccC-chhhhcCCcccEeecCCCCCcc-ccccc--cccccCcccccccccccccCc-CC-CCCCCCCCccCc
Q 007330 272 YLKLSLLMREEL-PDIVCELFNLQTLEVEHCPRLK-RLPQG--IGKLVNLRHLIYYYSNLDYMP-KG-FERLTCLRTLTE 345 (607)
Q Consensus 272 ~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~-~lp~~--i~~l~~L~~L~~~~~~l~~lp-~~-i~~l~~L~~L~~ 345 (607)
+|++++|.+..+ |..++++++|++|++++|. +. .+|.. ++.+++|++|+++.|.+..++ .. +..+++|+.|.
T Consensus 83 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~- 160 (455)
T 3v47_A 83 ILKLDYNQFLQLETGAFNGLANLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLD- 160 (455)
T ss_dssp EEECTTCTTCEECTTTTTTCTTCCEEECTTSC-CBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEE-
T ss_pred EEeCCCCccCccChhhccCcccCCEEeCCCCC-CCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEe-
Confidence 999999998777 6789999999999999998 55 45555 899999999999999998774 43 66677666665
Q ss_pred EEecCCccCCCcc-cccccccccccCceEEEeccCCCC--C--HhHHHHHHhcCCCCCcceEEEecCCCCCchhcHHHHh
Q 007330 346 FVVSGGKYSGKAC-NIEGLRHLNHLGGVFRITGLGNVT--D--VDEAENAELEKKRNVVDLGLWFDKDEEGEEADHEEII 420 (607)
Q Consensus 346 ~~~~~~~~~~~~~-~~~~l~~L~~L~~~l~i~~~~~~~--~--~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 420 (607)
++++.+.+... .+..+.. ..+. .+.+....... . ........+..+++|+.|++++|... +..+
T Consensus 161 --L~~n~l~~~~~~~l~~l~~-~~L~-~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-------~~~~ 229 (455)
T 3v47_A 161 --LTFNKVKSICEEDLLNFQG-KHFT-LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFK-------ESMA 229 (455)
T ss_dssp --CTTCCBSCCCTTTSGGGTT-CEEE-EEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCC-------HHHH
T ss_pred --CCCCcccccChhhhhcccc-cccc-ccccccCcccccchhhccccccccccccceeeeEecCCCccc-------ccch
Confidence 78777654432 2333311 1222 44443322111 0 11111222345678999999988753 2222
Q ss_pred hc---CCCCCCcceEEEeecCCCCCC----------Chhhh--cCCCccEEEEecCCCCCcCC-CCCCCCCCCeeEecCC
Q 007330 421 EA---LKPHSNLVALDILGFKGKITF----------PKWIM--SLNNLKSLHLRSCEKCEILS-PLGKLPSLETLYIAGM 484 (607)
Q Consensus 421 ~~---l~~~~~L~~L~l~~~~~~~~l----------p~~l~--~l~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~L~~~ 484 (607)
.. ....++|+.|+++++...... +..+. ..++|+.|++++|.....++ .++.+++|++|++++|
T Consensus 230 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 309 (455)
T 3v47_A 230 KRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN 309 (455)
T ss_dssp HHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred hhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCC
Confidence 22 223488999999987544311 11111 34789999999997666544 4889999999999999
Q ss_pred cCeeeCccccCCCCCCccCCCccceeeeccccccccccccccccCcccccccCCccceeeeecccCcccc-CCCCCCCCC
Q 007330 485 SGKRVGDEFFGIGSDCNIAFPKLKFLRVVDMFEWEEWGFGITRSNVKEDVMVMPCLNYLDIQFCFKLKAL-PGYLLEITA 563 (607)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-p~~~~~l~~ 563 (607)
.+..++...+ ..+++|++|+++++ .+..+... .+..+++|++|++++|. +..+ |..+..+++
T Consensus 310 ~l~~~~~~~~-------~~l~~L~~L~Ls~N-~l~~~~~~--------~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~ 372 (455)
T 3v47_A 310 EINKIDDNAF-------WGLTHLLKLNLSQN-FLGSIDSR--------MFENLDKLEVLDLSYNH-IRALGDQSFLGLPN 372 (455)
T ss_dssp CCCEECTTTT-------TTCTTCCEEECCSS-CCCEECGG--------GGTTCTTCCEEECCSSC-CCEECTTTTTTCTT
T ss_pred cccccChhHh-------cCcccCCEEECCCC-ccCCcChh--------HhcCcccCCEEECCCCc-ccccChhhcccccc
Confidence 9887765554 37899999999998 44444321 26789999999999975 5555 778889999
Q ss_pred cCeEEEecCcchhHhhhcCCCCCCCcccccCeeEeCceEeec
Q 007330 564 LEKLEILCCPILEQRYRKGTGEDWAKVAHVPTITINRQYVQG 605 (607)
Q Consensus 564 L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~ 605 (607)
|++|++++|.- +. -....+..+..+..+.+.+|.+.+
T Consensus 373 L~~L~L~~N~l-~~----~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 373 LKELALDTNQL-KS----VPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp CCEEECCSSCC-SC----CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccEEECCCCcc-cc----CCHhHhccCCcccEEEccCCCccc
Confidence 99999999852 22 122234667788889999887754
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=3.5e-24 Score=223.10 Aligned_cols=314 Identities=19% Similarity=0.109 Sum_probs=230.4
Q ss_pred cccccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccccccccccCcccccEEecCCCCcccCch
Q 007330 206 PVSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIPKEKEKLVHLRYLKLSLLMREELPD 285 (607)
Q Consensus 206 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~ 285 (607)
+..+..+++|++|+++++. ... ++ .+..+++|++|+++ ++.++.+| ++.+++|++|++++|.+..+|
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~--l~~-~~-~l~~l~~L~~L~Ls------~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~- 101 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSS--ITD-MT-GIEKLTGLTKLICT------SNNITTLD--LSQNTNLTYLACDSNKLTNLD- 101 (457)
T ss_dssp EEEHHHHTTCCEEECCSSC--CCC-CT-TGGGCTTCSEEECC------SSCCSCCC--CTTCTTCSEEECCSSCCSCCC-
T ss_pred ccChhHcCCCCEEEccCCC--ccc-Ch-hhcccCCCCEEEcc------CCcCCeEc--cccCCCCCEEECcCCCCceee-
Confidence 4466778999999999986 333 34 38899999999999 78888886 889999999999999999986
Q ss_pred hhhcCCcccEeecCCCCCccccccccccccCcccccccccccccCcCCCCCCCCCCccCcEEecCCccCCCccccccccc
Q 007330 286 IVCELFNLQTLEVEHCPRLKRLPQGIGKLVNLRHLIYYYSNLDYMPKGFERLTCLRTLTEFVVSGGKYSGKACNIEGLRH 365 (607)
Q Consensus 286 ~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~ 365 (607)
++++++|++|++++|. +..+| ++.+++|++|+++.|.+..++ ++.+++|+.|. ++.+...+.. .+..
T Consensus 102 -~~~l~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~---l~~n~~~~~~-~~~~--- 168 (457)
T 3bz5_A 102 -VTPLTKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELD---CHLNKKITKL-DVTP--- 168 (457)
T ss_dssp -CTTCTTCCEEECCSSC-CSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEE---CTTCSCCCCC-CCTT---
T ss_pred -cCCCCcCCEEECCCCc-CCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEE---CCCCCccccc-cccc---
Confidence 8999999999999997 88886 899999999999999998874 66666666665 7776432222 2333
Q ss_pred ccccCceEEEeccCCCCCHhHHHHHHhcCCCCCcceEEEecCCCCCchhcHHHHhhcCCCCCCcceEEEeecCCCCCCCh
Q 007330 366 LNHLGGVFRITGLGNVTDVDEAENAELEKKRNVVDLGLWFDKDEEGEEADHEEIIEALKPHSNLVALDILGFKGKITFPK 445 (607)
Q Consensus 366 L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~ 445 (607)
++.|+ .+.+.+.. +... .+..+++|+.|+++.|..... .+..+++|+.|++++|.+.+ +|
T Consensus 169 l~~L~-~L~ls~n~-l~~l------~l~~l~~L~~L~l~~N~l~~~----------~l~~l~~L~~L~Ls~N~l~~-ip- 228 (457)
T 3bz5_A 169 QTQLT-TLDCSFNK-ITEL------DVSQNKLLNRLNCDTNNITKL----------DLNQNIQLTFLDCSSNKLTE-ID- 228 (457)
T ss_dssp CTTCC-EEECCSSC-CCCC------CCTTCTTCCEEECCSSCCSCC----------CCTTCTTCSEEECCSSCCSC-CC-
T ss_pred CCcCC-EEECCCCc-ccee------ccccCCCCCEEECcCCcCCee----------ccccCCCCCEEECcCCcccc-cC-
Confidence 44444 66666532 2322 167789999999998876431 36788999999999999988 87
Q ss_pred hhhcCCCccEEEEecCCCCCcCCCCCCCCCCCeeEecCCcCeeeCccccC-CCCCCccCCCccceeeecccccccccccc
Q 007330 446 WIMSLNNLKSLHLRSCEKCEILSPLGKLPSLETLYIAGMSGKRVGDEFFG-IGSDCNIAFPKLKFLRVVDMFEWEEWGFG 524 (607)
Q Consensus 446 ~l~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 524 (607)
+..+++|+.|++++|..... + ++.+++|+.|+++++.++.+.-.... .+......+++|+.|+++++..++.++..
T Consensus 229 -~~~l~~L~~L~l~~N~l~~~-~-~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~ 305 (457)
T 3bz5_A 229 -VTPLTQLTYFDCSVNPLTEL-D-VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQ 305 (457)
T ss_dssp -CTTCTTCSEEECCSSCCSCC-C-CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECT
T ss_pred -ccccCCCCEEEeeCCcCCCc-C-HHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccC
Confidence 78899999999999965443 2 56677777666666554433221100 00000136799999999999877766632
Q ss_pred c-cccCcccccccCCccceeeeecccCccccCCCCCCCCCcCeEEEecCc
Q 007330 525 I-TRSNVKEDVMVMPCLNYLDIQFCFKLKALPGYLLEITALEKLEILCCP 573 (607)
Q Consensus 525 ~-~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 573 (607)
. .+..+ .+..+++|++|++++| +++.++ +..+++|+.|+++++.
T Consensus 306 ~~~L~~L--~l~~~~~L~~L~L~~N-~l~~l~--l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 306 AAGITEL--DLSQNPKLVYLYLNNT-ELTELD--VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp TCCCSCC--CCTTCTTCCEEECTTC-CCSCCC--CTTCTTCSEEECCSSC
T ss_pred CCcceEe--chhhcccCCEEECCCC-cccccc--cccCCcCcEEECCCCC
Confidence 1 01111 2557789999999885 577775 7789999999998764
No 30
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=9.6e-25 Score=223.89 Aligned_cols=303 Identities=15% Similarity=0.067 Sum_probs=236.5
Q ss_pred cCceeEEEEEeCCCCCcccc-ccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCccccccccccccc-ccccC
Q 007330 189 LEKFRHSMLVLGRRASFPVS-IFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIP-KEKEK 266 (607)
Q Consensus 189 ~~~~r~l~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp-~~~~~ 266 (607)
...++++.+.++.+..++.. +..+++|++|+++++. .....+..+..+++|++|+++ ++.+..+| ..++.
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~--i~~~~~~~~~~l~~L~~L~L~------~n~l~~~~~~~~~~ 115 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ--IEEIDTYAFAYAHTIQKLYMG------FNAIRYLPPHVFQN 115 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSC--CCEECTTTTTTCTTCCEEECC------SSCCCCCCTTTTTT
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCc--ccccChhhccCCCCcCEEECC------CCCCCcCCHHHhcC
Confidence 57899999999988877654 5789999999999986 445455568999999999999 78888874 56899
Q ss_pred cccccEEecCCCCcccCchh-hhcCCcccEeecCCCCCcccc-ccccccccCcccccccccccccCcCCCCCCCCCCccC
Q 007330 267 LVHLRYLKLSLLMREELPDI-VCELFNLQTLEVEHCPRLKRL-PQGIGKLVNLRHLIYYYSNLDYMPKGFERLTCLRTLT 344 (607)
Q Consensus 267 l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~~~~~~l~~lp~~i~~l~~L~~L~ 344 (607)
+++|++|++++|.+..+|.. ++++++|++|++++|. +..+ |..++.+++|++|+++.|.+..++ ++.+++|+.|.
T Consensus 116 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~ 192 (390)
T 3o6n_A 116 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHAN 192 (390)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEE
T ss_pred CCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCCccc--cccccccceee
Confidence 99999999999999999987 4899999999999998 6665 456899999999999999998774 34455555554
Q ss_pred cEEecCCccCCCcccccccccccccCceEEEeccCCCCCHhHHHHHHhcCCCCCcceEEEecCCCCCchhcHHHHhhcCC
Q 007330 345 EFVVSGGKYSGKACNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAELEKKRNVVDLGLWFDKDEEGEEADHEEIIEALK 424 (607)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~ 424 (607)
++.+.+.. +..... ++ .+.+.+..- ... .....++|+.|+++.|.... ...+.
T Consensus 193 ---l~~n~l~~----~~~~~~---L~-~L~l~~n~l-~~~------~~~~~~~L~~L~l~~n~l~~---------~~~l~ 245 (390)
T 3o6n_A 193 ---VSYNLLST----LAIPIA---VE-ELDASHNSI-NVV------RGPVNVELTILKLQHNNLTD---------TAWLL 245 (390)
T ss_dssp ---CCSSCCSE----EECCSS---CS-EEECCSSCC-CEE------ECCCCSSCCEEECCSSCCCC---------CGGGG
T ss_pred ---cccccccc----cCCCCc---ce-EEECCCCee-eec------cccccccccEEECCCCCCcc---------cHHHc
Confidence 66665322 222223 33 454444221 111 01234789999999987642 14567
Q ss_pred CCCCcceEEEeecCCCCCCChhhhcCCCccEEEEecCCCCCcCCCCCCCCCCCeeEecCCcCeeeCccccCCCCCCccCC
Q 007330 425 PHSNLVALDILGFKGKITFPKWIMSLNNLKSLHLRSCEKCEILSPLGKLPSLETLYIAGMSGKRVGDEFFGIGSDCNIAF 504 (607)
Q Consensus 425 ~~~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~ 504 (607)
.+++|+.|++++|.+....|..+..+++|+.|++++|...........+++|++|++++|.+..++..+ ..+
T Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--------~~l 317 (390)
T 3o6n_A 246 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQ--------PQF 317 (390)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGH--------HHH
T ss_pred CCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccc--------ccc
Confidence 889999999999999885688899999999999999976665556778999999999999987776544 368
Q ss_pred CccceeeeccccccccccccccccCcccccccCCccceeeeeccc
Q 007330 505 PKLKFLRVVDMFEWEEWGFGITRSNVKEDVMVMPCLNYLDIQFCF 549 (607)
Q Consensus 505 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 549 (607)
++|+.|+++++ .+..++. ..+++|++|++++++
T Consensus 318 ~~L~~L~L~~N-~i~~~~~-----------~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 318 DRLENLYLDHN-SIVTLKL-----------STHHTLKNLTLSHND 350 (390)
T ss_dssp TTCSEEECCSS-CCCCCCC-----------CTTCCCSEEECCSSC
T ss_pred CcCCEEECCCC-ccceeCc-----------hhhccCCEEEcCCCC
Confidence 99999999998 4555544 489999999999965
No 31
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.92 E-value=4.1e-24 Score=240.60 Aligned_cols=302 Identities=18% Similarity=0.211 Sum_probs=183.1
Q ss_pred ccCceeEEEEEeCCCCCc-cccccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccccc-ccccc
Q 007330 188 SLEKFRHSMLVLGRRASF-PVSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAI-PKEKE 265 (607)
Q Consensus 188 ~~~~~r~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~l-p~~~~ 265 (607)
.+.++++|.++++.+..+ +..+..+++|++|++++|.. .....+..|.++++|++|+|+ ++.+..+ |..++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~-~~~i~~~~f~~L~~L~~L~Ls------~N~l~~~~p~~~~ 94 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT-PLTIDKEAFRNLPNLRILDLG------SSKIYFLHPDAFQ 94 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCC-CCEECTTTTSSCTTCCEEECT------TCCCCEECTTSSC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCC-ccccCHHHhcCCCCCCEEECC------CCcCcccCHhHcc
Confidence 478899999999988765 56789999999999999841 233336668999999999999 7888776 88999
Q ss_pred CcccccEEecCCCCccc-Cchh--hhcCCcccEeecCCCCCcccc--ccccccccCcccccccccccccC-cCCCCCC--
Q 007330 266 KLVHLRYLKLSLLMREE-LPDI--VCELFNLQTLEVEHCPRLKRL--PQGIGKLVNLRHLIYYYSNLDYM-PKGFERL-- 337 (607)
Q Consensus 266 ~l~~L~~L~L~~~~i~~-lp~~--i~~L~~L~~L~L~~~~~l~~l--p~~i~~l~~L~~L~~~~~~l~~l-p~~i~~l-- 337 (607)
++++|++|+|++|.+.. +|.. ++++++|++|+|++|. +..+ +..++++++|++|+++.|.+..+ |..+..+
T Consensus 95 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~ 173 (844)
T 3j0a_A 95 GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG 173 (844)
T ss_dssp SCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH
T ss_pred CCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccC
Confidence 99999999999999765 5655 8999999999999998 5544 35789999999999988887654 3334433
Q ss_pred CCCCccCcEEecCCccCCCc-cccccccc-c--cccCceEEEeccCCC--------------------------------
Q 007330 338 TCLRTLTEFVVSGGKYSGKA-CNIEGLRH-L--NHLGGVFRITGLGNV-------------------------------- 381 (607)
Q Consensus 338 ~~L~~L~~~~~~~~~~~~~~-~~~~~l~~-L--~~L~~~l~i~~~~~~-------------------------------- 381 (607)
++|+.|. ++.+.+.+.. ..+..+.+ + ..|+ .+.+.+..-.
T Consensus 174 ~~L~~L~---L~~n~l~~~~~~~~~~~~~~~~~~~L~-~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~ 249 (844)
T 3j0a_A 174 KTLSFFS---LAANSLYSRVSVDWGKCMNPFRNMVLE-ILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGF 249 (844)
T ss_dssp CSSCCCE---ECCSBSCCCCCCCCCSSSCTTTTCCBS-EEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSC
T ss_pred CccceEE---CCCCccccccccchhhcCCccccCcee-EEecCCCcCchhHHHHHHhhcCcccccceecccccccccccc
Confidence 4444443 5444432211 11111111 0 0011 2222211000
Q ss_pred CCHhHHHHHHhcC--CCCCcceEEEecCCCCCchhcHHHHhhcCCCCCCcceEEEeecCCCCCCChhhhcCCCccEEEEe
Q 007330 382 TDVDEAENAELEK--KRNVVDLGLWFDKDEEGEEADHEEIIEALKPHSNLVALDILGFKGKITFPKWIMSLNNLKSLHLR 459 (607)
Q Consensus 382 ~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~ 459 (607)
..........+.. .++|+.|+++.|.... ..+..+..+++|+.|++++|.+....|..+..+++|++|+|+
T Consensus 250 ~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~-------~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls 322 (844)
T 3j0a_A 250 HNIKDPDQNTFAGLARSSVRHLDLSHGFVFS-------LNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS 322 (844)
T ss_dssp SSSTTGGGTTTTTTTTSCCCEEECTTCCCCE-------ECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEE
T ss_pred cccCCCChhhhhccccCCccEEECCCCcccc-------cChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECC
Confidence 0000000011111 2456666665554321 123345556666666666666655445555566666666666
Q ss_pred cCCCCCc-CCCCCCCCCCCeeEecCCcCeeeCccccCCCCCCccCCCccceeeeccc
Q 007330 460 SCEKCEI-LSPLGKLPSLETLYIAGMSGKRVGDEFFGIGSDCNIAFPKLKFLRVVDM 515 (607)
Q Consensus 460 ~~~~~~~-~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 515 (607)
+|..... ...++.+++|++|++++|.+..++...+. .+++|+.|+++++
T Consensus 323 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~-------~l~~L~~L~Ls~N 372 (844)
T 3j0a_A 323 YNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFK-------FLEKLQTLDLRDN 372 (844)
T ss_dssp SCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSC-------SCCCCCEEEEETC
T ss_pred CCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhc-------CCCCCCEEECCCC
Confidence 6654333 23355666666666666655544443331 3445555555443
No 32
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=5.9e-24 Score=211.87 Aligned_cols=230 Identities=24% Similarity=0.285 Sum_probs=178.5
Q ss_pred cCCceeEEEecCcccccccccccccccccCcccccEEecCCCCcccCchhhhcCCcccEeecCCCCCccccccccccccC
Q 007330 237 YLTCLRALKITGKVSWGQNSIYAIPKEKEKLVHLRYLKLSLLMREELPDIVCELFNLQTLEVEHCPRLKRLPQGIGKLVN 316 (607)
Q Consensus 237 ~l~~L~~L~L~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~ 316 (607)
....+++|+++ ++.+..+|..++.+++|++|++++|.+..+|..++++++|++|+|++|. +..+|..++++++
T Consensus 79 ~~~~l~~L~L~------~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~ 151 (328)
T 4fcg_A 79 TQPGRVALELR------SVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPASIASLNR 151 (328)
T ss_dssp TSTTCCEEEEE------SSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTT
T ss_pred cccceeEEEcc------CCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCcC
Confidence 45789999999 8888899998999999999999999988999999999999999999987 7789999999999
Q ss_pred ccccccccc-ccccCcCCCCCCCCCCccCcEEecCCccCCCcccccccccccccCceEEEeccCCCCCHhHHHHHHhcCC
Q 007330 317 LRHLIYYYS-NLDYMPKGFERLTCLRTLTEFVVSGGKYSGKACNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAELEKK 395 (607)
Q Consensus 317 L~~L~~~~~-~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~ 395 (607)
|++|+++.| .+..+|..+.... .
T Consensus 152 L~~L~L~~n~~~~~~p~~~~~~~---------~----------------------------------------------- 175 (328)
T 4fcg_A 152 LRELSIRACPELTELPEPLASTD---------A----------------------------------------------- 175 (328)
T ss_dssp CCEEEEEEETTCCCCCSCSEEEC---------------------------------------------------------
T ss_pred CCEEECCCCCCccccChhHhhcc---------c-----------------------------------------------
Confidence 999996664 4455555332200 0
Q ss_pred CCCcceEEEecCCCCCchhcHHHHhhcCCCCCCcceEEEeecCCCCCCChhhhcCCCccEEEEecCCCCCcCCCCCCCCC
Q 007330 396 RNVVDLGLWFDKDEEGEEADHEEIIEALKPHSNLVALDILGFKGKITFPKWIMSLNNLKSLHLRSCEKCEILSPLGKLPS 475 (607)
Q Consensus 396 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~l~~ 475 (607)
...+..+++|+.|++++|.+.. +|.++..+++|++|+|++|.....++.++.+++
T Consensus 176 ------------------------~~~~~~l~~L~~L~L~~n~l~~-lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~ 230 (328)
T 4fcg_A 176 ------------------------SGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLSALGPAIHHLPK 230 (328)
T ss_dssp ------------------------CCCEEESTTCCEEEEEEECCCC-CCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTT
T ss_pred ------------------------hhhhccCCCCCEEECcCCCcCc-chHhhcCCCCCCEEEccCCCCCcCchhhccCCC
Confidence 0012234567777777777764 788888888888888888876655556778888
Q ss_pred CCeeEecCCc-CeeeCccccCCCCCCccCCCccceeeeccccccccccccccccCcccccccCCccceeeeecccCcccc
Q 007330 476 LETLYIAGMS-GKRVGDEFFGIGSDCNIAFPKLKFLRVVDMFEWEEWGFGITRSNVKEDVMVMPCLNYLDIQFCFKLKAL 554 (607)
Q Consensus 476 L~~L~L~~~~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l 554 (607)
|++|++++|. ...++..+ ..+++|++|++++|.....++.. +..+++|++|++++|+.++.+
T Consensus 231 L~~L~Ls~n~~~~~~p~~~--------~~l~~L~~L~L~~n~~~~~~p~~---------~~~l~~L~~L~L~~n~~~~~i 293 (328)
T 4fcg_A 231 LEELDLRGCTALRNYPPIF--------GGRAPLKRLILKDCSNLLTLPLD---------IHRLTQLEKLDLRGCVNLSRL 293 (328)
T ss_dssp CCEEECTTCTTCCBCCCCT--------TCCCCCCEEECTTCTTCCBCCTT---------GGGCTTCCEEECTTCTTCCCC
T ss_pred CCEEECcCCcchhhhHHHh--------cCCCCCCEEECCCCCchhhcchh---------hhcCCCCCEEeCCCCCchhhc
Confidence 8888888877 44444433 36788888888888777766655 778899999999999989999
Q ss_pred CCCCCCCCCcCeEEEec
Q 007330 555 PGYLLEITALEKLEILC 571 (607)
Q Consensus 555 p~~~~~l~~L~~L~l~~ 571 (607)
|..+.++++|+.+.+..
T Consensus 294 P~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 294 PSLIAQLPANCIILVPP 310 (328)
T ss_dssp CGGGGGSCTTCEEECCG
T ss_pred cHHHhhccCceEEeCCH
Confidence 99899999999888764
No 33
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.91 E-value=3.6e-24 Score=236.25 Aligned_cols=348 Identities=14% Similarity=0.106 Sum_probs=229.3
Q ss_pred EEEEEeCCCCCccccccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccccc-cccccCcccccE
Q 007330 194 HSMLVLGRRASFPVSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAI-PKEKEKLVHLRY 272 (607)
Q Consensus 194 ~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~l-p~~~~~l~~L~~ 272 (607)
.+..++..+..+|..+. +++++|++++|. .....+..|.++++|++|+++ ++.+..+ |..++++++|++
T Consensus 8 ~~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls------~n~l~~~~~~~~~~l~~L~~ 77 (680)
T 1ziw_A 8 VADCSHLKLTQVPDDLP--TNITVLNLTHNQ--LRRLPAANFTRYSQLTSLDVG------FNTISKLEPELCQKLPMLKV 77 (680)
T ss_dssp EEECCSSCCSSCCSCSC--TTCSEEECCSSC--CCCCCGGGGGGGTTCSEEECC------SSCCCCCCTTHHHHCTTCCE
T ss_pred eeECCCCCccccccccC--CCCcEEECCCCC--CCCcCHHHHhCCCcCcEEECC------CCccCccCHHHHhcccCcCE
Confidence 45555666666666553 799999999997 455566678999999999999 7778776 677899999999
Q ss_pred EecCCCCcccCch-hhhcCCcccEeecCCCCCccccc-cccccccCcccccccccccccCc-CCCCCCCCCCccCcEEec
Q 007330 273 LKLSLLMREELPD-IVCELFNLQTLEVEHCPRLKRLP-QGIGKLVNLRHLIYYYSNLDYMP-KGFERLTCLRTLTEFVVS 349 (607)
Q Consensus 273 L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~~~~~~l~~lp-~~i~~l~~L~~L~~~~~~ 349 (607)
|++++|.+..+|. .++++++|++|++++|. +..+| ..++++++|++|+++.|.+..++ ..++.+++|+.|. ++
T Consensus 78 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~---L~ 153 (680)
T 1ziw_A 78 LNLQHNELSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELL---LS 153 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEE---CC
T ss_pred EECCCCccCccChhhhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEE---cc
Confidence 9999999999997 49999999999999998 67776 57899999999999999887664 4466777776665 77
Q ss_pred CCccCCCcccccccccccccCceEEEeccCCCCCHhHHHHHHhcCCCCCcceEEEecCCCCCchhcHHHHhhcCCCCCCc
Q 007330 350 GGKYSGKACNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAELEKKRNVVDLGLWFDKDEEGEEADHEEIIEALKPHSNL 429 (607)
Q Consensus 350 ~~~~~~~~~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L 429 (607)
++.+.+..........++.|+ .+.+.+.. +.. .....+..+.+|+.|.+..+... ......+...+ ..++|
T Consensus 154 ~n~l~~~~~~~~~~~~~~~L~-~L~L~~n~-l~~---~~~~~~~~l~~L~~L~l~~~~l~---~~~~~~~~~~l-~~~~L 224 (680)
T 1ziw_A 154 NNKIQALKSEELDIFANSSLK-KLELSSNQ-IKE---FSPGCFHAIGRLFGLFLNNVQLG---PSLTEKLCLEL-ANTSI 224 (680)
T ss_dssp SSCCCCBCHHHHGGGTTCEES-EEECTTCC-CCC---BCTTGGGGSSEECEEECTTCCCH---HHHHHHHHHHH-TTSCC
T ss_pred CCcccccCHHHhhcccccccc-EEECCCCc-ccc---cChhhhhhhhhhhhhhccccccC---hhhHHHHHHHh-hhccc
Confidence 777655443211111223333 55555432 111 11234566777888877655431 11112222222 34788
Q ss_pred ceEEEeecCCCCCCChhhhcCCC--ccEEEEecCCCCCcC-CCCCCCCCCCeeEecCCcCeeeCccccCCCCCCccCCCc
Q 007330 430 VALDILGFKGKITFPKWIMSLNN--LKSLHLRSCEKCEIL-SPLGKLPSLETLYIAGMSGKRVGDEFFGIGSDCNIAFPK 506 (607)
Q Consensus 430 ~~L~l~~~~~~~~lp~~l~~l~~--L~~L~L~~~~~~~~~-~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (607)
+.|++++|...+..|.++..++. |+.|++++|...... ..++.+++|++|++++|.+..++...+ ..+++
T Consensus 225 ~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-------~~l~~ 297 (680)
T 1ziw_A 225 RNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL-------HGLFN 297 (680)
T ss_dssp CEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTT-------TTCTT
T ss_pred cEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhh-------cCCCC
Confidence 88888888877756777776644 888888888655443 347788888888888888666554433 26777
Q ss_pred cceeeeccccccccccccccccC-cccccccCCccceeeeecccCcccc-CCCCCCCCCcCeEEEecCc
Q 007330 507 LKFLRVVDMFEWEEWGFGITRSN-VKEDVMVMPCLNYLDIQFCFKLKAL-PGYLLEITALEKLEILCCP 573 (607)
Q Consensus 507 L~~L~l~~~~~l~~~~~~~~~~~-~~~~~~~~~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~c~ 573 (607)
|+.|++.++.....+... .+.. ....+..+++|++|++++|. +..+ |..+..+++|++|++++|.
T Consensus 298 L~~L~L~~~~~~~~~~~~-~lp~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 298 VRYLNLKRSFTKQSISLA-SLPKIDDFSFQWLKCLEHLNMEDND-IPGIKSNMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp CCEEECTTCBCCC-------CCEECTTTTTTCTTCCEEECCSCC-BCCCCTTTTTTCTTCCEEECTTCB
T ss_pred ccEEeccchhhhcccccc-cccccChhhcccCCCCCEEECCCCc-cCCCChhHhccccCCcEEECCCCc
Confidence 888877754211111000 0000 00124466777777777753 4433 3445666777777776653
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=2.7e-23 Score=216.49 Aligned_cols=303 Identities=18% Similarity=0.118 Sum_probs=219.3
Q ss_pred cCceeEEEEEeCCCCCccccccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccccccccccCcc
Q 007330 189 LEKFRHSMLVLGRRASFPVSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIPKEKEKLV 268 (607)
Q Consensus 189 ~~~~r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp~~~~~l~ 268 (607)
..+++++.+.++.+..++ .+..+++|++|++++|. ... ++ +..+++|++|+++ ++.++.+| ++.++
T Consensus 41 l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~--l~~-~~--~~~l~~L~~L~Ls------~N~l~~~~--~~~l~ 106 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNN--ITT-LD--LSQNTNLTYLACD------SNKLTNLD--VTPLT 106 (457)
T ss_dssp HTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSC--CSC-CC--CTTCTTCSEEECC------SSCCSCCC--CTTCT
T ss_pred cCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCc--CCe-Ec--cccCCCCCEEECc------CCCCceee--cCCCC
Confidence 567899999999888754 78899999999999996 333 22 7889999999999 78888875 88999
Q ss_pred cccEEecCCCCcccCchhhhcCCcccEeecCCCCCccccccccccccCccccccccc-ccccCcCCCCCCCCCCccCcEE
Q 007330 269 HLRYLKLSLLMREELPDIVCELFNLQTLEVEHCPRLKRLPQGIGKLVNLRHLIYYYS-NLDYMPKGFERLTCLRTLTEFV 347 (607)
Q Consensus 269 ~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~-~l~~lp~~i~~l~~L~~L~~~~ 347 (607)
+|++|++++|.+..+| ++++++|++|++++|. ++.+| ++.+++|++|+++.| .+..+ .++.+++|+.|.
T Consensus 107 ~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~--- 176 (457)
T 3bz5_A 107 KLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLD--- 176 (457)
T ss_dssp TCCEEECCSSCCSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEE---
T ss_pred cCCEEECCCCcCCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEE---
Confidence 9999999999999986 8999999999999997 77775 889999999998777 44454 355566655554
Q ss_pred ecCCccCCCcccccccccccccCceEEEeccCCCCCHhHHHHHHhcCCCCCcceEEEecCCCCCchhcHHHHhhcCCCCC
Q 007330 348 VSGGKYSGKACNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAELEKKRNVVDLGLWFDKDEEGEEADHEEIIEALKPHS 427 (607)
Q Consensus 348 ~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~ 427 (607)
++++.+.+.+ +..+++|+ .+.+.+.. +... .+..+++|+.|+++.|.... ++ +..++
T Consensus 177 ls~n~l~~l~--l~~l~~L~----~L~l~~N~-l~~~------~l~~l~~L~~L~Ls~N~l~~--------ip--~~~l~ 233 (457)
T 3bz5_A 177 CSFNKITELD--VSQNKLLN----RLNCDTNN-ITKL------DLNQNIQLTFLDCSSNKLTE--------ID--VTPLT 233 (457)
T ss_dssp CCSSCCCCCC--CTTCTTCC----EEECCSSC-CSCC------CCTTCTTCSEEECCSSCCSC--------CC--CTTCT
T ss_pred CCCCccceec--cccCCCCC----EEECcCCc-CCee------ccccCCCCCEEECcCCcccc--------cC--ccccC
Confidence 8888776643 44444444 66555432 2222 36788999999999997632 22 67889
Q ss_pred CcceEEEeecCCCCCCChhhhcCCCccEEEEec----------CCCCCcCCCCCCCCCCCeeEecCCc-CeeeCccccCC
Q 007330 428 NLVALDILGFKGKITFPKWIMSLNNLKSLHLRS----------CEKCEILSPLGKLPSLETLYIAGMS-GKRVGDEFFGI 496 (607)
Q Consensus 428 ~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~----------~~~~~~~~~l~~l~~L~~L~L~~~~-~~~~~~~~~~~ 496 (607)
+|+.|++++|.+.+ +| +..+++|+.|++++ |.....++ .+.+++|+.|++++|. +..++...-..
T Consensus 234 ~L~~L~l~~N~l~~-~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~~l~~l~~~~~~L 309 (457)
T 3bz5_A 234 QLTYFDCSVNPLTE-LD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNTQLYLLDCQAAGI 309 (457)
T ss_dssp TCSEEECCSSCCSC-CC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTCTTCCEEECTTCCC
T ss_pred CCCEEEeeCCcCCC-cC--HHHCCCCCEEeccCCCCCEEECCCCccCCccc-ccccccCCEEECCCCcccceeccCCCcc
Confidence 99999999999887 55 34566666555544 43333333 5678999999999998 66666422111
Q ss_pred CCCCccCCCccceeeeccccccccccccccccCcccccccCCccceeeeecccCccccC
Q 007330 497 GSDCNIAFPKLKFLRVVDMFEWEEWGFGITRSNVKEDVMVMPCLNYLDIQFCFKLKALP 555 (607)
Q Consensus 497 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp 555 (607)
........++|+.|+++++ .++.++ +..+++|+.|+++++ .+..+|
T Consensus 310 ~~L~l~~~~~L~~L~L~~N-~l~~l~-----------l~~l~~L~~L~l~~N-~l~~l~ 355 (457)
T 3bz5_A 310 TELDLSQNPKLVYLYLNNT-ELTELD-----------VSHNTKLKSLSCVNA-HIQDFS 355 (457)
T ss_dssp SCCCCTTCTTCCEEECTTC-CCSCCC-----------CTTCTTCSEEECCSS-CCCBCT
T ss_pred eEechhhcccCCEEECCCC-cccccc-----------cccCCcCcEEECCCC-CCCCcc
Confidence 1111234566666666665 333332 558999999999985 566543
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=1.8e-24 Score=234.18 Aligned_cols=303 Identities=15% Similarity=0.066 Sum_probs=235.9
Q ss_pred cCceeEEEEEeCCCCCcccc-ccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCccccccccccccc-ccccC
Q 007330 189 LEKFRHSMLVLGRRASFPVS-IFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIP-KEKEK 266 (607)
Q Consensus 189 ~~~~r~l~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp-~~~~~ 266 (607)
...++.+.+.++.+..++.. +..+++|++|++++|. .....+..|..+++|++|+|+ ++.+..+| ..++.
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~------~n~l~~~~~~~~~~ 121 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ--IEEIDTYAFAYAHTIQKLYMG------FNAIRYLPPHVFQN 121 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSC--CCEECTTTTTTCTTCCEEECC------SSCCCCCCTTTTTT
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCC--CCCCChHHhcCCCCCCEEECC------CCcCCCCCHHHHcC
Confidence 46788999988888776654 5679999999999987 445556678999999999999 78888875 45799
Q ss_pred cccccEEecCCCCcccCchh-hhcCCcccEeecCCCCCcccc-ccccccccCcccccccccccccCcCCCCCCCCCCccC
Q 007330 267 LVHLRYLKLSLLMREELPDI-VCELFNLQTLEVEHCPRLKRL-PQGIGKLVNLRHLIYYYSNLDYMPKGFERLTCLRTLT 344 (607)
Q Consensus 267 l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~~~~~~l~~lp~~i~~l~~L~~L~ 344 (607)
+++|++|+|++|.+..+|.. ++++++|++|+|++|. +..+ |..++.+++|++|+++.|.+..++ ++.+++|+.|.
T Consensus 122 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~ 198 (597)
T 3oja_B 122 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHAN 198 (597)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEE
T ss_pred CCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhh
Confidence 99999999999999999987 4899999999999998 5555 456899999999999999998875 34456555554
Q ss_pred cEEecCCccCCCcccccccccccccCceEEEeccCCCCCHhHHHHHHhcCCCCCcceEEEecCCCCCchhcHHHHhhcCC
Q 007330 345 EFVVSGGKYSGKACNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAELEKKRNVVDLGLWFDKDEEGEEADHEEIIEALK 424 (607)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~ 424 (607)
++++.+.+ +..... +. .+.+.+... .... ....++|+.|++++|.... +..+.
T Consensus 199 ---l~~n~l~~----l~~~~~---L~-~L~ls~n~l-~~~~------~~~~~~L~~L~L~~n~l~~---------~~~l~ 251 (597)
T 3oja_B 199 ---VSYNLLST----LAIPIA---VE-ELDASHNSI-NVVR------GPVNVELTILKLQHNNLTD---------TAWLL 251 (597)
T ss_dssp ---CCSSCCSE----EECCTT---CS-EEECCSSCC-CEEE------CSCCSCCCEEECCSSCCCC---------CGGGG
T ss_pred ---cccCcccc----ccCCch---hh-eeeccCCcc-cccc------cccCCCCCEEECCCCCCCC---------Chhhc
Confidence 66665322 222223 33 555444221 1110 0123689999999987632 25677
Q ss_pred CCCCcceEEEeecCCCCCCChhhhcCCCccEEEEecCCCCCcCCCCCCCCCCCeeEecCCcCeeeCccccCCCCCCccCC
Q 007330 425 PHSNLVALDILGFKGKITFPKWIMSLNNLKSLHLRSCEKCEILSPLGKLPSLETLYIAGMSGKRVGDEFFGIGSDCNIAF 504 (607)
Q Consensus 425 ~~~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~ 504 (607)
.+++|+.|++++|.+.+..|..+..+++|+.|+|++|.....+...+.+|+|+.|+|++|.+..++..+ ..+
T Consensus 252 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~--------~~l 323 (597)
T 3oja_B 252 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQ--------PQF 323 (597)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGH--------HHH
T ss_pred cCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCccc--------ccC
Confidence 889999999999999886688999999999999999976666666778999999999999987777654 278
Q ss_pred CccceeeeccccccccccccccccCcccccccCCccceeeeeccc
Q 007330 505 PKLKFLRVVDMFEWEEWGFGITRSNVKEDVMVMPCLNYLDIQFCF 549 (607)
Q Consensus 505 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 549 (607)
++|+.|+++++ .+..++. ..+++|+.|++++|+
T Consensus 324 ~~L~~L~L~~N-~l~~~~~-----------~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 324 DRLENLYLDHN-SIVTLKL-----------STHHTLKNLTLSHND 356 (597)
T ss_dssp TTCSEEECCSS-CCCCCCC-----------CTTCCCSEEECCSSC
T ss_pred CCCCEEECCCC-CCCCcCh-----------hhcCCCCEEEeeCCC
Confidence 99999999998 4555544 489999999999976
No 36
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.90 E-value=4.4e-23 Score=232.18 Aligned_cols=338 Identities=17% Similarity=0.147 Sum_probs=231.1
Q ss_pred eEEEEEeCCCCCccccccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCccccccc-ccccc-cccccCcccc
Q 007330 193 RHSMLVLGRRASFPVSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQN-SIYAI-PKEKEKLVHL 270 (607)
Q Consensus 193 r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~-~l~~l-p~~~~~l~~L 270 (607)
+.+..++.....+|. -.+++++|++++|. +....+..|..+++|++|+++ ++ .+..+ |..++++++|
T Consensus 7 ~~~dcs~~~L~~vP~---lp~~l~~LdLs~N~--i~~i~~~~~~~l~~L~~LdLs------~n~~~~~i~~~~f~~L~~L 75 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ---VLNTTERLLLSFNY--IRTVTASSFPFLEQLQLLELG------SQYTPLTIDKEAFRNLPNL 75 (844)
T ss_dssp EEEEESCCCSSCCCS---SCTTCCEEEEESCC--CCEECSSSCSSCCSCSEEEEC------TTCCCCEECTTTTSSCTTC
T ss_pred eEEEccCCCCCCCCC---CCCCcCEEECCCCc--CCccChhHCcccccCeEEeCC------CCCCccccCHHHhcCCCCC
Confidence 345555666777665 46899999999997 455556678999999999999 44 45566 7889999999
Q ss_pred cEEecCCCCcccC-chhhhcCCcccEeecCCCCCccccccc--cccccCcccccccccccccCc--CCCCCCCCCCccCc
Q 007330 271 RYLKLSLLMREEL-PDIVCELFNLQTLEVEHCPRLKRLPQG--IGKLVNLRHLIYYYSNLDYMP--KGFERLTCLRTLTE 345 (607)
Q Consensus 271 ~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~--i~~l~~L~~L~~~~~~l~~lp--~~i~~l~~L~~L~~ 345 (607)
++|+|++|.+..+ |..++++++|++|+|++|.....+|.. ++++++|++|+++.|.+..++ ..++++++|+.|.
T Consensus 76 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~- 154 (844)
T 3j0a_A 76 RILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSID- 154 (844)
T ss_dssp CEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEE-
T ss_pred CEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEE-
Confidence 9999999998877 778999999999999999844446665 899999999999999998764 3577788777776
Q ss_pred EEecCCccCCCc-cccccc--ccccccCceEEEeccCCCCCHhHHHHHHhcCCC------CCcceEEEecCCCCCchhcH
Q 007330 346 FVVSGGKYSGKA-CNIEGL--RHLNHLGGVFRITGLGNVTDVDEAENAELEKKR------NVVDLGLWFDKDEEGEEADH 416 (607)
Q Consensus 346 ~~~~~~~~~~~~-~~~~~l--~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~------~L~~L~l~~~~~~~~~~~~~ 416 (607)
++++.+.+.. ..+..+ ++|+ .+.+....-.... ...+..+. .|+.|+++.|..........
T Consensus 155 --Ls~N~i~~~~~~~l~~l~~~~L~----~L~L~~n~l~~~~----~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 224 (844)
T 3j0a_A 155 --FSSNQIFLVCEHELEPLQGKTLS----FFSLAANSLYSRV----SVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNF 224 (844)
T ss_dssp --EESSCCCCCCSGGGHHHHHCSSC----CCEECCSBSCCCC----CCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGG
T ss_pred --CCCCcCCeeCHHHcccccCCccc----eEECCCCcccccc----ccchhhcCCccccCceeEEecCCCcCchhHHHHH
Confidence 7777654432 233333 3343 4444433211110 01112222 48999998885432111100
Q ss_pred HH-----------------------------HhhcCCC--CCCcceEEEeecCCCCCCChhhhcCCCccEEEEecCCCCC
Q 007330 417 EE-----------------------------IIEALKP--HSNLVALDILGFKGKITFPKWIMSLNNLKSLHLRSCEKCE 465 (607)
Q Consensus 417 ~~-----------------------------~~~~l~~--~~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~ 465 (607)
.. ....+.. .++|+.|++++|......|..+..+++|+.|+|++|....
T Consensus 225 ~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~ 304 (844)
T 3j0a_A 225 SNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK 304 (844)
T ss_dssp GGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCE
T ss_pred HhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCC
Confidence 00 0011111 3678888888887776556667788888888888886555
Q ss_pred cCC-CCCCCCCCCeeEecCCcCeeeCccccCCCCCCccCCCccceeeeccccccccccccccccCcccccccCCccceee
Q 007330 466 ILS-PLGKLPSLETLYIAGMSGKRVGDEFFGIGSDCNIAFPKLKFLRVVDMFEWEEWGFGITRSNVKEDVMVMPCLNYLD 544 (607)
Q Consensus 466 ~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ 544 (607)
..+ .+..+++|++|++++|.++.+....+ ..+++|+.|+++++ .+..++.. .+..+++|++|+
T Consensus 305 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-------~~l~~L~~L~L~~N-~i~~~~~~--------~~~~l~~L~~L~ 368 (844)
T 3j0a_A 305 IADEAFYGLDNLQVLNLSYNLLGELYSSNF-------YGLPKVAYIDLQKN-HIAIIQDQ--------TFKFLEKLQTLD 368 (844)
T ss_dssp ECTTTTTTCSSCCEEEEESCCCSCCCSCSC-------SSCTTCCEEECCSC-CCCCCCSS--------CSCSCCCCCEEE
T ss_pred CChHHhcCCCCCCEEECCCCCCCccCHHHh-------cCCCCCCEEECCCC-CCCccChh--------hhcCCCCCCEEE
Confidence 433 47788888888888887665544333 36788888888876 44444322 256788888888
Q ss_pred eecccCccccCCCCCCCCCcCeEEEecCc
Q 007330 545 IQFCFKLKALPGYLLEITALEKLEILCCP 573 (607)
Q Consensus 545 l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 573 (607)
+++| .++.++. +++|+.+++++|.
T Consensus 369 Ls~N-~l~~i~~----~~~L~~L~l~~N~ 392 (844)
T 3j0a_A 369 LRDN-ALTTIHF----IPSIPDIFLSGNK 392 (844)
T ss_dssp EETC-CSCCCSS----CCSCSEEEEESCC
T ss_pred CCCC-CCCcccC----CCCcchhccCCCC
Confidence 8885 4665553 6788888888875
No 37
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=1.7e-23 Score=220.71 Aligned_cols=294 Identities=20% Similarity=0.124 Sum_probs=199.5
Q ss_pred cCceeEEEEEeCCCCCc-cccccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccccccc-cccC
Q 007330 189 LEKFRHSMLVLGRRASF-PVSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIPK-EKEK 266 (607)
Q Consensus 189 ~~~~r~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp~-~~~~ 266 (607)
+..++.|.+.++.+..+ +..+..+++|++|++++|. +....+..|..+++|++|+|+ ++.+..+|. .+++
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--i~~~~~~~~~~l~~L~~L~L~------~n~l~~~~~~~~~~ 102 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI--VSAVEPGAFNNLFNLRTLGLR------SNRLKLIPLGVFTG 102 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSC--CCEECTTTTTTCTTCCEEECC------SSCCCSCCTTSSTT
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCc--cCEeChhhhhCCccCCEEECC------CCcCCccCcccccC
Confidence 57899999999998876 4578899999999999986 445556678999999999999 888988875 4789
Q ss_pred cccccEEecCCCCcccC-chhhhcCCcccEeecCCCCCcccc-ccccccccCcccccccccccccCcCC-CCCCCCCCcc
Q 007330 267 LVHLRYLKLSLLMREEL-PDIVCELFNLQTLEVEHCPRLKRL-PQGIGKLVNLRHLIYYYSNLDYMPKG-FERLTCLRTL 343 (607)
Q Consensus 267 l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~~~~~~l~~lp~~-i~~l~~L~~L 343 (607)
+++|++|++++|.+..+ |..+.++++|++|++++|. +..+ |..+..+++|++|+++.|.+..+|.. +..+++|+.|
T Consensus 103 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 181 (477)
T 2id5_A 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVL 181 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEE
T ss_pred CCCCCEEECCCCccccCChhHccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEE
Confidence 99999999999998777 4568999999999999998 5544 56789999999999999999888753 6667766666
Q ss_pred CcEEecCCccCCCcccccccccccccCceEEEeccCCCCCHhHHHHHHhcCCCCCcceEEEecCCCCCchhcHHHHhhcC
Q 007330 344 TEFVVSGGKYSGKACNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAELEKKRNVVDLGLWFDKDEEGEEADHEEIIEAL 423 (607)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l 423 (607)
. ++.+.+..... .. +..+++|+.|+++.+... ..++...
T Consensus 182 ~---l~~n~i~~~~~--~~-----------------------------~~~l~~L~~L~l~~~~~~-------~~~~~~~ 220 (477)
T 2id5_A 182 R---LRHLNINAIRD--YS-----------------------------FKRLYRLKVLEISHWPYL-------DTMTPNC 220 (477)
T ss_dssp E---EESCCCCEECT--TC-----------------------------SCSCTTCCEEEEECCTTC-------CEECTTT
T ss_pred e---CCCCcCcEeCh--hh-----------------------------cccCcccceeeCCCCccc-------cccCccc
Confidence 5 66665332211 11 223344555555544321 1122222
Q ss_pred CCCCCcceEEEeecCCCCCCCh-hhhcCCCccEEEEecCCCCCcCC-CCCCCCCCCeeEecCCcCeeeCccccCCCCCCc
Q 007330 424 KPHSNLVALDILGFKGKITFPK-WIMSLNNLKSLHLRSCEKCEILS-PLGKLPSLETLYIAGMSGKRVGDEFFGIGSDCN 501 (607)
Q Consensus 424 ~~~~~L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~ 501 (607)
....+|+.|++++|.+.. +|. .+..+++|+.|+|++|......+ .+..+++|+.|+|++|.+..++...+
T Consensus 221 ~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~------- 292 (477)
T 2id5_A 221 LYGLNLTSLSITHCNLTA-VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAF------- 292 (477)
T ss_dssp TTTCCCSEEEEESSCCCS-CCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTB-------
T ss_pred ccCccccEEECcCCcccc-cCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHh-------
Confidence 333466666666666665 553 45566666666666665333222 25566666666666666555544333
Q ss_pred cCCCccceeeeccccccccccccccccCcccccccCCccceeeeeccc
Q 007330 502 IAFPKLKFLRVVDMFEWEEWGFGITRSNVKEDVMVMPCLNYLDIQFCF 549 (607)
Q Consensus 502 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 549 (607)
..+++|+.|+++++ .++.++.. .+..+++|++|++++++
T Consensus 293 ~~l~~L~~L~L~~N-~l~~~~~~--------~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 293 RGLNYLRVLNVSGN-QLTTLEES--------VFHSVGNLETLILDSNP 331 (477)
T ss_dssp TTCTTCCEEECCSS-CCSCCCGG--------GBSCGGGCCEEECCSSC
T ss_pred cCcccCCEEECCCC-cCceeCHh--------HcCCCcccCEEEccCCC
Confidence 25566666666665 34444322 13456666666666643
No 38
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.90 E-value=4.6e-23 Score=206.40 Aligned_cols=246 Identities=22% Similarity=0.212 Sum_probs=157.5
Q ss_pred ceeEEEEEeCCCCCccccccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccccc-cccccCccc
Q 007330 191 KFRHSMLVLGRRASFPVSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAI-PKEKEKLVH 269 (607)
Q Consensus 191 ~~r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~l-p~~~~~l~~ 269 (607)
.++.+.+.++.+..+|..+ .++++.|++++|. .....+..+..+++|++|+++ ++.+..+ |..++.+++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~--i~~~~~~~~~~l~~L~~L~L~------~n~l~~~~~~~~~~l~~ 103 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI--SPDTTLLDLQNND--ISELRKDDFKGLQHLYALVLV------NNKISKIHEKAFSPLRK 103 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC--CTTCCEEECCSSC--CCEECTTTTTTCTTCCEEECC------SSCCCEECGGGSTTCTT
T ss_pred cCCEEECCCCCccccCCCC--CCCCeEEECCCCc--CCccCHhHhhCCCCCcEEECC------CCccCccCHhHhhCcCC
Confidence 3566777666666666544 3678888888876 344445557788888888888 6677666 667788888
Q ss_pred ccEEecCCCCcccCchhhhcCCcccEeecCCCCCccccccc-cccccCccccccccccccc---CcCCCCCCCCCCccCc
Q 007330 270 LRYLKLSLLMREELPDIVCELFNLQTLEVEHCPRLKRLPQG-IGKLVNLRHLIYYYSNLDY---MPKGFERLTCLRTLTE 345 (607)
Q Consensus 270 L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~~~~~~l~~---lp~~i~~l~~L~~L~~ 345 (607)
|++|++++|.+..+|..+. ++|++|++++|. +..+|.. +..+++|++|+++.|.+.. .|..+..+ +|+.|.
T Consensus 104 L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~- 178 (332)
T 2ft3_A 104 LQKLYISKNHLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLR- 178 (332)
T ss_dssp CCEEECCSSCCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCB-
T ss_pred CCEEECCCCcCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEE-
Confidence 8888888888888877665 788888888877 6666654 6778888888887777753 33344444 444444
Q ss_pred EEecCCccCCCcccccccccccccCceEEEeccCCCCCHhHHHHHHhcCCCCCcceEEEecCCCCCchhcHHHHhhcCCC
Q 007330 346 FVVSGGKYSGKACNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAELEKKRNVVDLGLWFDKDEEGEEADHEEIIEALKP 425 (607)
Q Consensus 346 ~~~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~ 425 (607)
++++.+...+..+ .++|+.|++++|.... ..+..+..
T Consensus 179 --l~~n~l~~l~~~~----------------------------------~~~L~~L~l~~n~i~~-------~~~~~l~~ 215 (332)
T 2ft3_A 179 --ISEAKLTGIPKDL----------------------------------PETLNELHLDHNKIQA-------IELEDLLR 215 (332)
T ss_dssp --CCSSBCSSCCSSS----------------------------------CSSCSCCBCCSSCCCC-------CCTTSSTT
T ss_pred --CcCCCCCccCccc----------------------------------cCCCCEEECCCCcCCc-------cCHHHhcC
Confidence 5555432211110 1345555555554321 11234556
Q ss_pred CCCcceEEEeecCCCCCCChhhhcCCCccEEEEecCCCCCcCCCCCCCCCCCeeEecCCcCeeeCcccc
Q 007330 426 HSNLVALDILGFKGKITFPKWIMSLNNLKSLHLRSCEKCEILSPLGKLPSLETLYIAGMSGKRVGDEFF 494 (607)
Q Consensus 426 ~~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~ 494 (607)
+++|+.|++++|.+....|.++..+++|+.|++++|.....+..+..+++|++|++++|.++.++...+
T Consensus 216 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~ 284 (332)
T 2ft3_A 216 YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDF 284 (332)
T ss_dssp CTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSS
T ss_pred CCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHc
Confidence 667777777777766633446667777777777777554444446667777777777776666655444
No 39
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=2.4e-22 Score=200.22 Aligned_cols=220 Identities=20% Similarity=0.241 Sum_probs=158.6
Q ss_pred CCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccccccccccCcccccEEecCCCCcccCchhhhcCC
Q 007330 212 AKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIPKEKEKLVHLRYLKLSLLMREELPDIVCELF 291 (607)
Q Consensus 212 ~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~ 291 (607)
.++++.|+++++. ... ++..+..+++|++|+++ ++.+..+|..++.+++|++|++++|.+..+|..+++++
T Consensus 80 ~~~l~~L~L~~n~--l~~-lp~~l~~l~~L~~L~L~------~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~ 150 (328)
T 4fcg_A 80 QPGRVALELRSVP--LPQ-FPDQAFRLSHLQHMTID------AAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLN 150 (328)
T ss_dssp STTCCEEEEESSC--CSS-CCSCGGGGTTCSEEEEE------SSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCT
T ss_pred ccceeEEEccCCC--chh-cChhhhhCCCCCEEECC------CCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCc
Confidence 4678888888876 333 34446779999999999 88888999999999999999999999999999999999
Q ss_pred cccEeecCCCCCcccccccccc---------ccCcccccccccccccCcCCCCCCCCCCccCcEEecCCccCCCcccccc
Q 007330 292 NLQTLEVEHCPRLKRLPQGIGK---------LVNLRHLIYYYSNLDYMPKGFERLTCLRTLTEFVVSGGKYSGKACNIEG 362 (607)
Q Consensus 292 ~L~~L~L~~~~~l~~lp~~i~~---------l~~L~~L~~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~ 362 (607)
+|++|++++|..++.+|..++. +++|++|+++.|.+..+|..++
T Consensus 151 ~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~--------------------------- 203 (328)
T 4fcg_A 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIA--------------------------- 203 (328)
T ss_dssp TCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGG---------------------------
T ss_pred CCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhc---------------------------
Confidence 9999999999888899987765 5555555555554444443322
Q ss_pred cccccccCceEEEeccCCCCCHhHHHHHHhcCCCCCcceEEEecCCCCCchhcHHHHhhcCCCCCCcceEEEeecCCCCC
Q 007330 363 LRHLNHLGGVFRITGLGNVTDVDEAENAELEKKRNVVDLGLWFDKDEEGEEADHEEIIEALKPHSNLVALDILGFKGKIT 442 (607)
Q Consensus 363 l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 442 (607)
.+++|+.|++++|.+.+
T Consensus 204 --------------------------------------------------------------~l~~L~~L~L~~N~l~~- 220 (328)
T 4fcg_A 204 --------------------------------------------------------------NLQNLKSLKIRNSPLSA- 220 (328)
T ss_dssp --------------------------------------------------------------GCTTCCEEEEESSCCCC-
T ss_pred --------------------------------------------------------------CCCCCCEEEccCCCCCc-
Confidence 33455555666666555
Q ss_pred CChhhhcCCCccEEEEecCCCCCcCC-CCCCCCCCCeeEecCCc-CeeeCccccCCCCCCccCCCccceeeecccccccc
Q 007330 443 FPKWIMSLNNLKSLHLRSCEKCEILS-PLGKLPSLETLYIAGMS-GKRVGDEFFGIGSDCNIAFPKLKFLRVVDMFEWEE 520 (607)
Q Consensus 443 lp~~l~~l~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~L~~~~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 520 (607)
+|..+..+++|++|++++|.....++ .++.+++|++|+|++|. ...++..+ ..+++|++|++++|+.++.
T Consensus 221 l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~--------~~l~~L~~L~L~~n~~~~~ 292 (328)
T 4fcg_A 221 LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDI--------HRLTQLEKLDLRGCVNLSR 292 (328)
T ss_dssp CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTG--------GGCTTCCEEECTTCTTCCC
T ss_pred CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhh--------hcCCCCCEEeCCCCCchhh
Confidence 66666677777777777766554433 36677777777777776 44455433 2567777777777776666
Q ss_pred ccccccccCcccccccCCccceeeeec
Q 007330 521 WGFGITRSNVKEDVMVMPCLNYLDIQF 547 (607)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~L~~L~l~~ 547 (607)
++.. +..+++|+.+.+..
T Consensus 293 iP~~---------l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 293 LPSL---------IAQLPANCIILVPP 310 (328)
T ss_dssp CCGG---------GGGSCTTCEEECCG
T ss_pred ccHH---------HhhccCceEEeCCH
Confidence 6655 66777777777765
No 40
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.88 E-value=4.1e-22 Score=199.34 Aligned_cols=246 Identities=18% Similarity=0.151 Sum_probs=121.6
Q ss_pred eeEEEEEeCCCCCccccccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccccc-cccccCcccc
Q 007330 192 FRHSMLVLGRRASFPVSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAI-PKEKEKLVHL 270 (607)
Q Consensus 192 ~r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~l-p~~~~~l~~L 270 (607)
++.+.+.+..+..+|..+ .++++.|++++|. .....+..+..+++|++|+++ ++.+..+ |..++.+++|
T Consensus 33 l~~l~~~~~~l~~lp~~~--~~~l~~L~L~~n~--i~~~~~~~~~~l~~L~~L~L~------~n~l~~~~~~~~~~l~~L 102 (330)
T 1xku_A 33 LRVVQCSDLGLEKVPKDL--PPDTALLDLQNNK--ITEIKDGDFKNLKNLHTLILI------NNKISKISPGAFAPLVKL 102 (330)
T ss_dssp TTEEECTTSCCCSCCCSC--CTTCCEEECCSSC--CCCBCTTTTTTCTTCCEEECC------SSCCCCBCTTTTTTCTTC
T ss_pred CeEEEecCCCccccCccC--CCCCeEEECCCCc--CCEeChhhhccCCCCCEEECC------CCcCCeeCHHHhcCCCCC
Confidence 344444444444444333 2456666666654 333333345566666666666 5555555 5556666666
Q ss_pred cEEecCCCCcccCchhhhcCCcccEeecCCCCCcccccc-ccccccCccccccccccccc---CcCCCCCCCCCCccCcE
Q 007330 271 RYLKLSLLMREELPDIVCELFNLQTLEVEHCPRLKRLPQ-GIGKLVNLRHLIYYYSNLDY---MPKGFERLTCLRTLTEF 346 (607)
Q Consensus 271 ~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~~~~~~l~~---lp~~i~~l~~L~~L~~~ 346 (607)
++|++++|.++.+|..+. ++|++|++++|. +..++. .+..+++|++|+++.|.+.. .+..+..+++|+.|.
T Consensus 103 ~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~-- 177 (330)
T 1xku_A 103 ERLYLSKNQLKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR-- 177 (330)
T ss_dssp CEEECCSSCCSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEE--
T ss_pred CEEECCCCcCCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEE--
Confidence 666666666666665443 566666666655 444433 34566666666665555542 222233333333332
Q ss_pred EecCCccCCCcccccccccccccCceEEEeccCCCCCHhHHHHHHhcCCCCCcceEEEecCCCCCchhcHHHHhhcCCCC
Q 007330 347 VVSGGKYSGKACNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAELEKKRNVVDLGLWFDKDEEGEEADHEEIIEALKPH 426 (607)
Q Consensus 347 ~~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~ 426 (607)
++++.+...+.. ..++|+.|+++.|.... ..+..+..+
T Consensus 178 -l~~n~l~~l~~~----------------------------------~~~~L~~L~l~~n~l~~-------~~~~~~~~l 215 (330)
T 1xku_A 178 -IADTNITTIPQG----------------------------------LPPSLTELHLDGNKITK-------VDAASLKGL 215 (330)
T ss_dssp -CCSSCCCSCCSS----------------------------------CCTTCSEEECTTSCCCE-------ECTGGGTTC
T ss_pred -CCCCccccCCcc----------------------------------ccccCCEEECCCCcCCc-------cCHHHhcCC
Confidence 443332111100 01244444444443211 112334455
Q ss_pred CCcceEEEeecCCCCCCChhhhcCCCccEEEEecCCCCCcCCCCCCCCCCCeeEecCCcCeeeCcccc
Q 007330 427 SNLVALDILGFKGKITFPKWIMSLNNLKSLHLRSCEKCEILSPLGKLPSLETLYIAGMSGKRVGDEFF 494 (607)
Q Consensus 427 ~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~ 494 (607)
++|+.|++++|.+....+.++..+++|++|++++|.....+..+..+++|++|++++|.++.++...+
T Consensus 216 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f 283 (330)
T 1xku_A 216 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDF 283 (330)
T ss_dssp TTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred CCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhc
Confidence 55666666655555423334555556666666665444333445555666666666655555544433
No 41
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.88 E-value=3.4e-22 Score=218.82 Aligned_cols=143 Identities=20% Similarity=0.202 Sum_probs=120.1
Q ss_pred cCceeEEEEEeCCCCCcc-ccccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccccccc-cccC
Q 007330 189 LEKFRHSMLVLGRRASFP-VSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIPK-EKEK 266 (607)
Q Consensus 189 ~~~~r~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp~-~~~~ 266 (607)
+..+++|.++++.+..++ .++.++++|++|++++|. +..+.+..|.++++|++|+|+ +|.++.+|. .|++
T Consensus 51 p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~--i~~i~~~~f~~L~~L~~L~Ls------~N~l~~l~~~~f~~ 122 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE--IQTIEDGAYQSLSHLSTLILT------GNPIQSLALGAFSG 122 (635)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC--CCEECTTTTTTCTTCCEEECT------TCCCCEECGGGGTT
T ss_pred CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCc--CCCcChhHhcCCCCCCEEEcc------CCcCCCCCHHHhcC
Confidence 678999999999998775 478899999999999996 555566778999999999999 888988874 5899
Q ss_pred cccccEEecCCCCcccCchh-hhcCCcccEeecCCCCCcc--ccccccccccCcccccccccccccCcC-CCCCCCCC
Q 007330 267 LVHLRYLKLSLLMREELPDI-VCELFNLQTLEVEHCPRLK--RLPQGIGKLVNLRHLIYYYSNLDYMPK-GFERLTCL 340 (607)
Q Consensus 267 l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~--~lp~~i~~l~~L~~L~~~~~~l~~lp~-~i~~l~~L 340 (607)
+++|++|++++|.+..+|+. ++++++|++|++++|. +. .+|..++.+++|++|+++.|.+..++. .+..+.++
T Consensus 123 L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l 199 (635)
T 4g8a_A 123 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 199 (635)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC
T ss_pred CCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCccccccccccccchhhh
Confidence 99999999999999999864 8999999999999997 55 467888999999999999998876643 33333333
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.88 E-value=5.6e-22 Score=198.35 Aligned_cols=263 Identities=17% Similarity=0.181 Sum_probs=130.0
Q ss_pred ceeEEEecCcccccccccccccccccCcccccEEecCCCCcccCch-hhhcCCcccEeecCCCCCcccc-ccccccccCc
Q 007330 240 CLRALKITGKVSWGQNSIYAIPKEKEKLVHLRYLKLSLLMREELPD-IVCELFNLQTLEVEHCPRLKRL-PQGIGKLVNL 317 (607)
Q Consensus 240 ~L~~L~L~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~l-p~~i~~l~~L 317 (607)
++++++++ ++.++.+|..+. ++|++|++++|.++.+|. .++++++|++|++++|. +..+ |..++.+++|
T Consensus 32 ~l~~l~~~------~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L 102 (330)
T 1xku_A 32 HLRVVQCS------DLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAPLVKL 102 (330)
T ss_dssp ETTEEECT------TSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTTTTCTTC
T ss_pred CCeEEEec------CCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCc-CCeeCHHHhcCCCCC
Confidence 45666666 555556655443 466666666666666654 46666666666666665 4443 5556666666
Q ss_pred ccccccccccccCcCCCCCCCCCCccCcEEecCCccCCCcccccccccccccCceEEEeccCCCCCHhHHHHHHhcCCCC
Q 007330 318 RHLIYYYSNLDYMPKGFERLTCLRTLTEFVVSGGKYSGKACNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAELEKKRN 397 (607)
Q Consensus 318 ~~L~~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~ 397 (607)
++|+++.|.+..+|..+. ++|+.|. ++++.+.... ...+..+++
T Consensus 103 ~~L~Ls~n~l~~l~~~~~--~~L~~L~---l~~n~l~~~~-------------------------------~~~~~~l~~ 146 (330)
T 1xku_A 103 ERLYLSKNQLKELPEKMP--KTLQELR---VHENEITKVR-------------------------------KSVFNGLNQ 146 (330)
T ss_dssp CEEECCSSCCSBCCSSCC--TTCCEEE---CCSSCCCBBC-------------------------------HHHHTTCTT
T ss_pred CEEECCCCcCCccChhhc--ccccEEE---CCCCcccccC-------------------------------HhHhcCCcc
Confidence 666666666666665543 3333333 4444321111 112233344
Q ss_pred CcceEEEecCCCCCchhcHHHHhhcCCCCCCcceEEEeecCCCCCCChhhhcCCCccEEEEecCCCCCc-CCCCCCCCCC
Q 007330 398 VVDLGLWFDKDEEGEEADHEEIIEALKPHSNLVALDILGFKGKITFPKWIMSLNNLKSLHLRSCEKCEI-LSPLGKLPSL 476 (607)
Q Consensus 398 L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~-~~~l~~l~~L 476 (607)
|+.|+++.|.... .+..+..+..+++|+.|++++|.+.. +|..+. ++|++|++++|..... +..+..+++|
T Consensus 147 L~~L~l~~n~l~~-----~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L 218 (330)
T 1xku_A 147 MIVVELGTNPLKS-----SGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNL 218 (330)
T ss_dssp CCEEECCSSCCCG-----GGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTC
T ss_pred ccEEECCCCcCCc-----cCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCC
Confidence 4444444443210 00112233445555555555555544 444332 5555555555543332 1234555556
Q ss_pred CeeEecCCcCeeeCccccCCCCCCccCCCccceeeeccccccccccccccccCcccccccCCccceeeeecccCccccCC
Q 007330 477 ETLYIAGMSGKRVGDEFFGIGSDCNIAFPKLKFLRVVDMFEWEEWGFGITRSNVKEDVMVMPCLNYLDIQFCFKLKALPG 556 (607)
Q Consensus 477 ~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~ 556 (607)
++|++++|.++.++...+ ..+++|++|+++++ .+..++.+ +..+++|++|++++| .++.+|.
T Consensus 219 ~~L~Ls~n~l~~~~~~~~-------~~l~~L~~L~L~~N-~l~~lp~~---------l~~l~~L~~L~l~~N-~i~~~~~ 280 (330)
T 1xku_A 219 AKLGLSFNSISAVDNGSL-------ANTPHLRELHLNNN-KLVKVPGG---------LADHKYIQVVYLHNN-NISAIGS 280 (330)
T ss_dssp CEEECCSSCCCEECTTTG-------GGSTTCCEEECCSS-CCSSCCTT---------TTTCSSCCEEECCSS-CCCCCCT
T ss_pred CEEECCCCcCceeChhhc-------cCCCCCCEEECCCC-cCccCChh---------hccCCCcCEEECCCC-cCCccCh
Confidence 666665555544443322 14555566655554 33333333 445556666666553 3444442
Q ss_pred C-CC------CCCCcCeEEEecCc
Q 007330 557 Y-LL------EITALEKLEILCCP 573 (607)
Q Consensus 557 ~-~~------~l~~L~~L~l~~c~ 573 (607)
. +. ..++|+.|++.++|
T Consensus 281 ~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 281 NDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp TSSSCSSCCTTSCCCSEEECCSSS
T ss_pred hhcCCcccccccccccceEeecCc
Confidence 1 11 12455555555555
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=1.6e-22 Score=202.47 Aligned_cols=292 Identities=16% Similarity=0.094 Sum_probs=166.6
Q ss_pred CeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccccc-cccccCcccccEEecCCCCcccC-chhhhcCC
Q 007330 214 KLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAI-PKEKEKLVHLRYLKLSLLMREEL-PDIVCELF 291 (607)
Q Consensus 214 ~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~l-p~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~ 291 (607)
+++.++++++. ... ++..+ .++|++|+++ ++.+..+ |..++.+++|++|++++|.+..+ |..+++++
T Consensus 34 ~l~~l~~~~~~--l~~-ip~~~--~~~l~~L~l~------~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 102 (332)
T 2ft3_A 34 HLRVVQCSDLG--LKA-VPKEI--SPDTTLLDLQ------NNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLR 102 (332)
T ss_dssp ETTEEECCSSC--CSS-CCSCC--CTTCCEEECC------SSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCT
T ss_pred cCCEEECCCCC--ccc-cCCCC--CCCCeEEECC------CCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcC
Confidence 46666666654 222 22212 3567777777 6666666 34567777777777777776666 45577777
Q ss_pred cccEeecCCCCCccccccccccccCcccccccccccccCcCC-CCCCCCCCccCcEEecCCccCCCcccccccccccccC
Q 007330 292 NLQTLEVEHCPRLKRLPQGIGKLVNLRHLIYYYSNLDYMPKG-FERLTCLRTLTEFVVSGGKYSGKACNIEGLRHLNHLG 370 (607)
Q Consensus 292 ~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~l~~lp~~-i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~ 370 (607)
+|++|++++|. +..+|..+. ++|++|+++.|.+..+|.. +..+++|+.|. ++++.+......
T Consensus 103 ~L~~L~L~~n~-l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~---l~~n~l~~~~~~----------- 165 (332)
T 2ft3_A 103 KLQKLYISKNH-LVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIE---MGGNPLENSGFE----------- 165 (332)
T ss_dssp TCCEEECCSSC-CCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEE---CCSCCCBGGGSC-----------
T ss_pred CCCEEECCCCc-CCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEE---CCCCccccCCCC-----------
Confidence 77777777765 666766655 6777777777777666653 45555555544 554442110000
Q ss_pred ceEEEeccCCCCCHhHHHHHHhcCCCCCcceEEEecCCCCCchhcHHHHhhcCCCCCCcceEEEeecCCCCCCChhhhcC
Q 007330 371 GVFRITGLGNVTDVDEAENAELEKKRNVVDLGLWFDKDEEGEEADHEEIIEALKPHSNLVALDILGFKGKITFPKWIMSL 450 (607)
Q Consensus 371 ~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~l~~l 450 (607)
...+..+ +|+.|+++.|.... ++..+ +++|+.|++++|.+....|..+..+
T Consensus 166 ------------------~~~~~~l-~L~~L~l~~n~l~~--------l~~~~--~~~L~~L~l~~n~i~~~~~~~l~~l 216 (332)
T 2ft3_A 166 ------------------PGAFDGL-KLNYLRISEAKLTG--------IPKDL--PETLNELHLDHNKIQAIELEDLLRY 216 (332)
T ss_dssp ------------------TTSSCSC-CCSCCBCCSSBCSS--------CCSSS--CSSCSCCBCCSSCCCCCCTTSSTTC
T ss_pred ------------------cccccCC-ccCEEECcCCCCCc--------cCccc--cCCCCEEECCCCcCCccCHHHhcCC
Confidence 0011222 55566666554321 22222 2577777777777776344566777
Q ss_pred CCccEEEEecCCCCCcCC-CCCCCCCCCeeEecCCcCeeeCccccCCCCCCccCCCccceeeeccccccccccccccccC
Q 007330 451 NNLKSLHLRSCEKCEILS-PLGKLPSLETLYIAGMSGKRVGDEFFGIGSDCNIAFPKLKFLRVVDMFEWEEWGFGITRSN 529 (607)
Q Consensus 451 ~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 529 (607)
++|+.|++++|......+ .++.+++|++|++++|.++.+|..+ ..+++|+.|+++++ .++.++... ...
T Consensus 217 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l--------~~l~~L~~L~l~~N-~l~~~~~~~-~~~ 286 (332)
T 2ft3_A 217 SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGL--------PDLKLLQVVYLHTN-NITKVGVND-FCP 286 (332)
T ss_dssp TTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTG--------GGCTTCCEEECCSS-CCCBCCTTS-SSC
T ss_pred CCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhh--------hcCccCCEEECCCC-CCCccChhH-ccc
Confidence 777777777775444333 3667777777777777766666543 25677777777775 444443220 000
Q ss_pred cccccccCCccceeeeecccCc--cccCCCCCCCCCcCeEEEecCc
Q 007330 530 VKEDVMVMPCLNYLDIQFCFKL--KALPGYLLEITALEKLEILCCP 573 (607)
Q Consensus 530 ~~~~~~~~~~L~~L~l~~c~~l--~~lp~~~~~l~~L~~L~l~~c~ 573 (607)
. .....+++|+.|++.+++.. ...|..+..+++|+.+++++|.
T Consensus 287 ~-~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 287 V-GFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp S-SCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred c-ccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 0 00112566777777776533 2334456667777777777664
No 44
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.87 E-value=5.9e-22 Score=206.14 Aligned_cols=320 Identities=16% Similarity=0.089 Sum_probs=133.4
Q ss_pred cCceeEEEEEeCCCCCccccccCCCCeeEEEeeccchhhhhhhhhhhccCCce-------------eEEEecCccccccc
Q 007330 189 LEKFRHSMLVLGRRASFPVSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCL-------------RALKITGKVSWGQN 255 (607)
Q Consensus 189 ~~~~r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L-------------~~L~L~~~~~~~~~ 255 (607)
...++.+.++++.+..+|..+.++++|+.|++++|. ....++..+..+++| ++|+++ ++
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~--~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~------~~ 81 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSE--WERNAPPGNGEQREMAVSRLRDCLDRQAHELELN------NL 81 (454)
T ss_dssp ------------------------CCHHHHHHHHHH--HHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECT------TS
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCc--ccccCCcccccchhcchhhhhhhhccCCCEEEec------CC
Confidence 456788888888888888888999999999998875 333344445555554 777777 55
Q ss_pred ccccccccccCcccccEEecCCCCcccCchhhhc-----------------CCcccEeecCCCCCccccccccccccCcc
Q 007330 256 SIYAIPKEKEKLVHLRYLKLSLLMREELPDIVCE-----------------LFNLQTLEVEHCPRLKRLPQGIGKLVNLR 318 (607)
Q Consensus 256 ~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~-----------------L~~L~~L~L~~~~~l~~lp~~i~~l~~L~ 318 (607)
.++.+|.. .++|++|++++|.+..+|..+.+ .++|++|++++|. ++.+| .++.+++|+
T Consensus 82 ~l~~lp~~---~~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~-l~~lp-~~~~l~~L~ 156 (454)
T 1jl5_A 82 GLSSLPEL---PPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQ-LEKLP-ELQNSSFLK 156 (454)
T ss_dssp CCSCCCSC---CTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSC-CSSCC-CCTTCTTCC
T ss_pred ccccCCCC---cCCCCEEEccCCcCCccccccCCCcEEECCCCccCcccCCCCCCCEEECcCCC-CCCCc-ccCCCCCCC
Confidence 55555541 24555566655555555532200 1344444444443 44444 344445555
Q ss_pred cccccccccccCcCCCCCCCCCCccCcEEecCCccCCCcccccccccccccCceEEEeccCCCCCHhHHHHHHhcCCCCC
Q 007330 319 HLIYYYSNLDYMPKGFERLTCLRTLTEFVVSGGKYSGKACNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAELEKKRNV 398 (607)
Q Consensus 319 ~L~~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L 398 (607)
+|+++.|.+..+|..+ .+|+.| +++++.+.+.+ .+.. ++.|+ .+.+.+..- .... ....+|
T Consensus 157 ~L~l~~N~l~~lp~~~---~~L~~L---~L~~n~l~~l~-~~~~---l~~L~-~L~l~~N~l-~~l~-------~~~~~L 217 (454)
T 1jl5_A 157 IIDVDNNSLKKLPDLP---PSLEFI---AAGNNQLEELP-ELQN---LPFLT-AIYADNNSL-KKLP-------DLPLSL 217 (454)
T ss_dssp EEECCSSCCSCCCCCC---TTCCEE---ECCSSCCSSCC-CCTT---CTTCC-EEECCSSCC-SSCC-------CCCTTC
T ss_pred EEECCCCcCcccCCCc---ccccEE---ECcCCcCCcCc-cccC---CCCCC-EEECCCCcC-CcCC-------CCcCcc
Confidence 5554444444444322 122222 24444333221 1222 22222 333322110 0000 011244
Q ss_pred cceEEEecCCCCCchhcHHHHhhcCCCCCCcceEEEeecCCCCCCChhhhcCCCccEEEEecCCCCCcCCCCCCCCCCCe
Q 007330 399 VDLGLWFDKDEEGEEADHEEIIEALKPHSNLVALDILGFKGKITFPKWIMSLNNLKSLHLRSCEKCEILSPLGKLPSLET 478 (607)
Q Consensus 399 ~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~ 478 (607)
+.|+++.|... .++ .+..+++|+.|++++|.+.+ +|.. +++|+.|++++|.... ++. .+++|++
T Consensus 218 ~~L~l~~n~l~--------~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~--~~~~L~~ 281 (454)
T 1jl5_A 218 ESIVAGNNILE--------ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPE--LPQSLTF 281 (454)
T ss_dssp CEEECCSSCCS--------SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCC--CCTTCCE
T ss_pred cEEECcCCcCC--------ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCc--ccCcCCE
Confidence 44444444321 112 24445555555555555544 4432 2455555555553222 221 1245555
Q ss_pred eEecCCcCeeeCcccc-------CCCC-CCccCC-CccceeeeccccccccccccccccCcccccccCCccceeeeeccc
Q 007330 479 LYIAGMSGKRVGDEFF-------GIGS-DCNIAF-PKLKFLRVVDMFEWEEWGFGITRSNVKEDVMVMPCLNYLDIQFCF 549 (607)
Q Consensus 479 L~L~~~~~~~~~~~~~-------~~~~-~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 549 (607)
|++++|.++.++.... .... .....+ ++|+.|+++++ .+..++. .+++|++|++++|
T Consensus 282 L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N-~l~~lp~------------~~~~L~~L~L~~N- 347 (454)
T 1jl5_A 282 LDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN-KLIELPA------------LPPRLERLIASFN- 347 (454)
T ss_dssp EECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSS-CCSCCCC------------CCTTCCEEECCSS-
T ss_pred EECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCC-ccccccc------------cCCcCCEEECCCC-
Confidence 5555555444321100 0000 000011 34555555553 2332221 3567777777775
Q ss_pred CccccCCCCCCCCCcCeEEEecCc
Q 007330 550 KLKALPGYLLEITALEKLEILCCP 573 (607)
Q Consensus 550 ~l~~lp~~~~~l~~L~~L~l~~c~ 573 (607)
.++.+|. .+++|+.|++++|+
T Consensus 348 ~l~~lp~---~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 348 HLAEVPE---LPQNLKQLHVEYNP 368 (454)
T ss_dssp CCSCCCC---CCTTCCEEECCSSC
T ss_pred ccccccc---hhhhccEEECCCCC
Confidence 4666775 35777777777764
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.87 E-value=6.2e-23 Score=203.25 Aligned_cols=118 Identities=22% Similarity=0.324 Sum_probs=61.1
Q ss_pred CeeEEEeeccchhhhh--hhhhhhccCCceeEEEecCcccccccccc-cccccccCcccccEEecCCCCcc-cCchhhhc
Q 007330 214 KLRSLLIHSEFEVSFH--VLQGLFDYLTCLRALKITGKVSWGQNSIY-AIPKEKEKLVHLRYLKLSLLMRE-ELPDIVCE 289 (607)
Q Consensus 214 ~L~~L~l~~~~~~~~~--~~~~~~~~l~~L~~L~L~~~~~~~~~~l~-~lp~~~~~l~~L~~L~L~~~~i~-~lp~~i~~ 289 (607)
+++.|+++++. ... .++..+..+++|++|++++ .+.+. .+|..++.+++|++|++++|.+. .+|..+++
T Consensus 51 ~l~~L~L~~~~--l~~~~~~~~~l~~l~~L~~L~L~~-----~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~ 123 (313)
T 1ogq_A 51 RVNNLDLSGLN--LPKPYPIPSSLANLPYLNFLYIGG-----INNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ 123 (313)
T ss_dssp CEEEEEEECCC--CSSCEECCGGGGGCTTCSEEEEEE-----ETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG
T ss_pred eEEEEECCCCC--ccCCcccChhHhCCCCCCeeeCCC-----CCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhC
Confidence 45555555543 111 2333455555566666551 13332 34555555666666666665554 55555556
Q ss_pred CCcccEeecCCCCCccccccccccccCcccccccccccc-cCcCCCCCCC
Q 007330 290 LFNLQTLEVEHCPRLKRLPQGIGKLVNLRHLIYYYSNLD-YMPKGFERLT 338 (607)
Q Consensus 290 L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~l~-~lp~~i~~l~ 338 (607)
+++|++|++++|.....+|..++.+++|++|+++.|.+. .+|..++.++
T Consensus 124 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 173 (313)
T 1ogq_A 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS 173 (313)
T ss_dssp CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCC
T ss_pred CCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhh
Confidence 666666666665522245555555666666665555554 4444444443
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.87 E-value=5.4e-23 Score=203.71 Aligned_cols=245 Identities=20% Similarity=0.179 Sum_probs=174.4
Q ss_pred CceeEEEEEeCCCC---CccccccCCCCeeEEEeec-cchhhhhhhhhhhccCCceeEEEecCcccccccccc-cccccc
Q 007330 190 EKFRHSMLVLGRRA---SFPVSIFKAKKLRSLLIHS-EFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIY-AIPKEK 264 (607)
Q Consensus 190 ~~~r~l~l~~~~~~---~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~-~lp~~~ 264 (607)
.+++++.+.++.+. .++..+..+++|++|++++ +. ....++..+..+++|++|+++ ++.+. .+|..+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~--l~~~~p~~l~~l~~L~~L~Ls------~n~l~~~~p~~~ 121 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN--LVGPIPPAIAKLTQLHYLYIT------HTNVSGAIPDFL 121 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETT--EESCCCGGGGGCTTCSEEEEE------EECCEEECCGGG
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCc--ccccCChhHhcCCCCCEEECc------CCeeCCcCCHHH
Confidence 67999999999887 4688999999999999995 54 333456668999999999999 88887 779999
Q ss_pred cCcccccEEecCCCCcc-cCchhhhcCCcccEeecCCCCCcccccccccccc-Ccccccccccccc-cCcCCCCCCCCCC
Q 007330 265 EKLVHLRYLKLSLLMRE-ELPDIVCELFNLQTLEVEHCPRLKRLPQGIGKLV-NLRHLIYYYSNLD-YMPKGFERLTCLR 341 (607)
Q Consensus 265 ~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~-~L~~L~~~~~~l~-~lp~~i~~l~~L~ 341 (607)
+.+++|++|++++|.+. .+|..++++++|++|++++|.....+|..++.++ +|++|+++.|.+. .+|..+..++ |+
T Consensus 122 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~ 200 (313)
T 1ogq_A 122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LA 200 (313)
T ss_dssp GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CS
T ss_pred hCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-cc
Confidence 99999999999999977 7899999999999999999984348999999998 9999999999887 6777776664 44
Q ss_pred ccCcEEecCCccCCCcccccccccccccCceEEEeccCCCCCHhHHHHHHhcCCCCCcceEEEecCCCCCchhcHHHHhh
Q 007330 342 TLTEFVVSGGKYSGKACNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAELEKKRNVVDLGLWFDKDEEGEEADHEEIIE 421 (607)
Q Consensus 342 ~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 421 (607)
.| +++++.+.+.. ...+..+++|+.|+++.|... ..+.
T Consensus 201 ~L---~Ls~N~l~~~~-------------------------------~~~~~~l~~L~~L~L~~N~l~--------~~~~ 238 (313)
T 1ogq_A 201 FV---DLSRNMLEGDA-------------------------------SVLFGSDKNTQKIHLAKNSLA--------FDLG 238 (313)
T ss_dssp EE---ECCSSEEEECC-------------------------------GGGCCTTSCCSEEECCSSEEC--------CBGG
T ss_pred EE---ECcCCcccCcC-------------------------------CHHHhcCCCCCEEECCCCcee--------eecC
Confidence 44 46665522110 011233445555555554431 1122
Q ss_pred cCCCCCCcceEEEeecCCCCCCChhhhcCCCccEEEEecCCCCCcCCCCCCCCCCCeeEecCCc
Q 007330 422 ALKPHSNLVALDILGFKGKITFPKWIMSLNNLKSLHLRSCEKCEILSPLGKLPSLETLYIAGMS 485 (607)
Q Consensus 422 ~l~~~~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~ 485 (607)
.+..+++|+.|++++|.+.+.+|.++..+++|+.|+|++|.....+|..+.+++|+.|++.+|+
T Consensus 239 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 239 KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred cccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCC
Confidence 2445566666666666665445666666666666666666544445555555666666665554
No 47
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.87 E-value=2.2e-23 Score=222.19 Aligned_cols=159 Identities=15% Similarity=0.136 Sum_probs=123.4
Q ss_pred CcccccCCCcccccchHHHHHHHHhcCCChHHHHHHHHHhhccCCChhHHHHHHhcccccccCcCCCCchHHHHhcccCC
Q 007330 1 MFNFTSLLDESEKRKLLYESSKVQQGGVGIKTILHKFGNLLCLRRARKERGSSILDIEMGKLNELENDPLAPLLLSYNDF 80 (607)
Q Consensus 1 ~f~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~~g~~L~~~~~~~~W~~~~~~~~~~~l~~~~~~i~~~L~~SYd~L 80 (607)
||+.+||++.. ++++++++++|+++|+|+||||+++|+.|+.+ +. +| ...+....+.. ....+.++|++||++|
T Consensus 301 Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~w-~~-~~~l~~~l~~~--~~~~i~~~l~~Sy~~L 374 (549)
T 2a5y_B 301 FLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-TF-EK-MAQLNNKLESR--GLVGVECITPYSYKSL 374 (549)
T ss_dssp HHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-SH-HH-HHHHHHHHHHH--CSSTTCCCSSSSSSSH
T ss_pred HHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccc-hH-HH-HHHhHHHhhcc--cHHHHHHHHhcccccc
Confidence 46667776543 57899999999999999999999999999876 32 33 22233322222 2346999999999999
Q ss_pred ChhhHHHhh-----------hhcccCCCceeChhHHHHHHHHc--CCcccCC-CCcHHHHHHHHHHHHHHcCCCcccccC
Q 007330 81 PPMIKLCFL-----------YCAVFPKGYNIEKDELIKLWMAQ--GYIRPIG-NKEMEVIGQEYFDYLATRSFFQKFDKD 146 (607)
Q Consensus 81 ~~~~k~cfL-----------~~s~fp~~~~i~~~~Li~~wi~~--g~i~~~~-~~~~~~~~~~~~~~L~~~~ll~~~~~~ 146 (607)
|.++|.||+ |||+||+|+.|+ ++.|+|+ ||+.... +.+++++++ ++++|++++|++....+
T Consensus 375 ~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~ 449 (549)
T 2a5y_B 375 AMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRM 449 (549)
T ss_dssp HHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEEECS
T ss_pred cHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecCC
Confidence 999999999 999999999999 8999999 9998776 567888888 99999999999987553
Q ss_pred CCCCeeEEEECHHHHHHHHHhhhhceE
Q 007330 147 DEDNVTRCKMSDAVHDFAQFLTKHEYF 173 (607)
Q Consensus 147 ~~~~~~~~~mhdli~~~~~~~~~~e~~ 173 (607)
...+|+|||++|++|+.++.+++.
T Consensus 450 ---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 450 ---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp ---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred ---CceEEEeChHHHHHHHHHHHHHHH
Confidence 345799999999999998877643
No 48
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.86 E-value=1.5e-20 Score=195.50 Aligned_cols=301 Identities=18% Similarity=0.183 Sum_probs=192.9
Q ss_pred cCceeEEEEEeCCCCCccccccCCCCeeEEEeeccchhhhhhhhhhhccC-CceeEEEecCcccccccccccccccccCc
Q 007330 189 LEKFRHSMLVLGRRASFPVSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYL-TCLRALKITGKVSWGQNSIYAIPKEKEKL 267 (607)
Q Consensus 189 ~~~~r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l-~~L~~L~L~~~~~~~~~~l~~lp~~~~~l 267 (607)
+..++.+.+.++.+..++.. .++|+.|++++|. ... +... ++|++|+++ ++.++.+| .++.+
T Consensus 90 ~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~--l~~-----l~~~~~~L~~L~L~------~n~l~~lp-~~~~l 152 (454)
T 1jl5_A 90 PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNN--LKA-----LSDLPPLLEYLGVS------NNQLEKLP-ELQNS 152 (454)
T ss_dssp CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSC--CSC-----CCSCCTTCCEEECC------SSCCSSCC-CCTTC
T ss_pred cCCCCEEEccCCcCCccccc---cCCCcEEECCCCc--cCc-----ccCCCCCCCEEECc------CCCCCCCc-ccCCC
Confidence 56788888888877765532 4788888888875 211 2122 688888888 77787787 58888
Q ss_pred ccccEEecCCCCcccCchhhhcCCcccEeecCCCCCccccccccccccCcccccccccccccCcCCCCCCCCCCccCcEE
Q 007330 268 VHLRYLKLSLLMREELPDIVCELFNLQTLEVEHCPRLKRLPQGIGKLVNLRHLIYYYSNLDYMPKGFERLTCLRTLTEFV 347 (607)
Q Consensus 268 ~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~l~~lp~~i~~l~~L~~L~~~~ 347 (607)
++|++|++++|.+..+|..+ .+|++|++++|. +..+| .++.+++|++|+++.|.+..+|... .+|+.| +
T Consensus 153 ~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~-l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L---~ 221 (454)
T 1jl5_A 153 SFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQ-LEELP-ELQNLPFLTAIYADNNSLKKLPDLP---LSLESI---V 221 (454)
T ss_dssp TTCCEEECCSSCCSCCCCCC---TTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSSCCSSCCCCC---TTCCEE---E
T ss_pred CCCCEEECCCCcCcccCCCc---ccccEEECcCCc-CCcCc-cccCCCCCCEEECCCCcCCcCCCCc---CcccEE---E
Confidence 88999999988888887644 588888998886 77787 6888888999988888888777543 344444 4
Q ss_pred ecCCccCCCcccccccccccccCceEEEeccCCCCCHhHHHHHHhcCCCCCcceEEEecCCCCCchhcHHHHhhcCCCCC
Q 007330 348 VSGGKYSGKACNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAELEKKRNVVDLGLWFDKDEEGEEADHEEIIEALKPHS 427 (607)
Q Consensus 348 ~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~ 427 (607)
++++.+...+ .+. .++.|+ .+.+.+.. +.... ...++|+.|+++.|.... ++. .++
T Consensus 222 l~~n~l~~lp-~~~---~l~~L~-~L~l~~N~-l~~l~-------~~~~~L~~L~l~~N~l~~--------l~~---~~~ 277 (454)
T 1jl5_A 222 AGNNILEELP-ELQ---NLPFLT-TIYADNNL-LKTLP-------DLPPSLEALNVRDNYLTD--------LPE---LPQ 277 (454)
T ss_dssp CCSSCCSSCC-CCT---TCTTCC-EEECCSSC-CSSCC-------SCCTTCCEEECCSSCCSC--------CCC---CCT
T ss_pred CcCCcCCccc-ccC---CCCCCC-EEECCCCc-CCccc-------ccccccCEEECCCCcccc--------cCc---ccC
Confidence 7777655433 233 344444 56555432 11111 123678888888776532 111 236
Q ss_pred CcceEEEeecCCCCCCChhhhcCCCccEEEEecCCCCCcCCCCCCC-CCCCeeEecCCcCeeeCccccCCCCCCccCCCc
Q 007330 428 NLVALDILGFKGKITFPKWIMSLNNLKSLHLRSCEKCEILSPLGKL-PSLETLYIAGMSGKRVGDEFFGIGSDCNIAFPK 506 (607)
Q Consensus 428 ~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~l-~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (607)
+|+.|++++|.+.+ +|.. .++|+.|++++|.... ++ .+ ++|++|++++|.++.++. .+++
T Consensus 278 ~L~~L~ls~N~l~~-l~~~---~~~L~~L~l~~N~l~~-i~---~~~~~L~~L~Ls~N~l~~lp~-----------~~~~ 338 (454)
T 1jl5_A 278 SLTFLDVSENIFSG-LSEL---PPNLYYLNASSNEIRS-LC---DLPPSLEELNVSNNKLIELPA-----------LPPR 338 (454)
T ss_dssp TCCEEECCSSCCSE-ESCC---CTTCCEEECCSSCCSE-EC---CCCTTCCEEECCSSCCSCCCC-----------CCTT
T ss_pred cCCEEECcCCccCc-ccCc---CCcCCEEECcCCcCCc-cc---CCcCcCCEEECCCCccccccc-----------cCCc
Confidence 78888888887766 4431 2578888888775333 22 23 478888888887655443 4678
Q ss_pred cceeeeccccccccccccccccCcccccccCCccceeeeecccCcc--ccCCCCCCC-------------CCcCeEEEec
Q 007330 507 LKFLRVVDMFEWEEWGFGITRSNVKEDVMVMPCLNYLDIQFCFKLK--ALPGYLLEI-------------TALEKLEILC 571 (607)
Q Consensus 507 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~--~lp~~~~~l-------------~~L~~L~l~~ 571 (607)
|++|+++++ .++.++. .+++|++|++++|+-.. .+|..+..+ ++|+.|++++
T Consensus 339 L~~L~L~~N-~l~~lp~------------~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~ 405 (454)
T 1jl5_A 339 LERLIASFN-HLAEVPE------------LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVET 405 (454)
T ss_dssp CCEEECCSS-CCSCCCC------------CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-------------------
T ss_pred CCEEECCCC-ccccccc------------hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCC
Confidence 899998887 4444332 46888889888865333 466666666 7788888888
Q ss_pred Cc
Q 007330 572 CP 573 (607)
Q Consensus 572 c~ 573 (607)
++
T Consensus 406 N~ 407 (454)
T 1jl5_A 406 NP 407 (454)
T ss_dssp --
T ss_pred Cc
Confidence 75
No 49
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.85 E-value=1.1e-20 Score=206.77 Aligned_cols=142 Identities=23% Similarity=0.167 Sum_probs=117.0
Q ss_pred eCCCCCccccccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCccccccccccccc-ccccCcccccEEecCC
Q 007330 199 LGRRASFPVSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIP-KEKEKLVHLRYLKLSL 277 (607)
Q Consensus 199 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp-~~~~~l~~L~~L~L~~ 277 (607)
+....++|..+ .+++++|++++|. +....+..|.++++|++|+|+ ++.++.+| ..|+++++|++|+|++
T Consensus 40 ~~~l~~vP~~l--p~~~~~LdLs~N~--i~~l~~~~f~~l~~L~~L~Ls------~N~i~~i~~~~f~~L~~L~~L~Ls~ 109 (635)
T 4g8a_A 40 ELNFYKIPDNL--PFSTKNLDLSFNP--LRHLGSYSFFSFPELQVLDLS------RCEIQTIEDGAYQSLSHLSTLILTG 109 (635)
T ss_dssp TSCCSSCCSSS--CTTCCEEECTTSC--CCEECTTTTTTCTTCCEEECT------TCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CCCcCccCCCC--CcCCCEEEeeCCC--CCCCCHHHHhCCCCCCEEECC------CCcCCCcChhHhcCCCCCCEEEccC
Confidence 33555666554 3589999999997 555566779999999999999 88999885 4689999999999999
Q ss_pred CCcccCchh-hhcCCcccEeecCCCCCccccccc-cccccCccccccccccccc--CcCCCCCCCCCCccCcEEecCCcc
Q 007330 278 LMREELPDI-VCELFNLQTLEVEHCPRLKRLPQG-IGKLVNLRHLIYYYSNLDY--MPKGFERLTCLRTLTEFVVSGGKY 353 (607)
Q Consensus 278 ~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~~~~~~l~~--lp~~i~~l~~L~~L~~~~~~~~~~ 353 (607)
|.++.+|.. +++|++|++|+|++|. ++.+|.. ++++++|++|+++.|.+.. +|..++.+++|+.|. ++++.+
T Consensus 110 N~l~~l~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~---L~~N~l 185 (635)
T 4g8a_A 110 NPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD---LSSNKI 185 (635)
T ss_dssp CCCCEECGGGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE---CCSSCC
T ss_pred CcCCCCCHHHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhc---ccCccc
Confidence 999999865 7999999999999997 8888764 8999999999999999875 456677788777775 666654
Q ss_pred C
Q 007330 354 S 354 (607)
Q Consensus 354 ~ 354 (607)
.
T Consensus 186 ~ 186 (635)
T 4g8a_A 186 Q 186 (635)
T ss_dssp C
T ss_pred c
Confidence 3
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.84 E-value=9.3e-21 Score=187.37 Aligned_cols=237 Identities=16% Similarity=0.145 Sum_probs=124.6
Q ss_pred ccccccccccccCcccccEEecCCCCcccCchh-hhcCCcccEeecCCCCCcccc---ccccccccCccccccccccccc
Q 007330 254 QNSIYAIPKEKEKLVHLRYLKLSLLMREELPDI-VCELFNLQTLEVEHCPRLKRL---PQGIGKLVNLRHLIYYYSNLDY 329 (607)
Q Consensus 254 ~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~l---p~~i~~l~~L~~L~~~~~~l~~ 329 (607)
+..++.+|..+. ++|++|++++|.+..+|.. +.++++|++|++++|. +..+ |..+..+++|++|+++.|.+..
T Consensus 16 ~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~ 92 (306)
T 2z66_A 16 SKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFNGVIT 92 (306)
T ss_dssp SSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSCSEEE
T ss_pred CCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCc-cCcccCcccccccccccCEEECCCCcccc
Confidence 445555554332 4566666666665555554 4556666666666654 4332 3444555666666655555555
Q ss_pred CcCCCCCCCCCCccCcEEecCCccCCCcccccccccccccCceEEEeccCCCCCHhHHHHHHhcCCCCCcceEEEecCCC
Q 007330 330 MPKGFERLTCLRTLTEFVVSGGKYSGKACNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAELEKKRNVVDLGLWFDKDE 409 (607)
Q Consensus 330 lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 409 (607)
+|..+..+++|+.|. ++++.+.....
T Consensus 93 l~~~~~~l~~L~~L~---l~~n~l~~~~~--------------------------------------------------- 118 (306)
T 2z66_A 93 MSSNFLGLEQLEHLD---FQHSNLKQMSE--------------------------------------------------- 118 (306)
T ss_dssp EEEEEETCTTCCEEE---CTTSEEESSTT---------------------------------------------------
T ss_pred ChhhcCCCCCCCEEE---CCCCccccccc---------------------------------------------------
Confidence 555444444444443 33332110000
Q ss_pred CCchhcHHHHhhcCCCCCCcceEEEeecCCCCCCChhhhcCCCccEEEEecCCCCC--cCCCCCCCCCCCeeEecCCcCe
Q 007330 410 EGEEADHEEIIEALKPHSNLVALDILGFKGKITFPKWIMSLNNLKSLHLRSCEKCE--ILSPLGKLPSLETLYIAGMSGK 487 (607)
Q Consensus 410 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~--~~~~l~~l~~L~~L~L~~~~~~ 487 (607)
...+..+++|+.|++++|......|..+..+++|++|++++|.... .+..+..+++|++|++++|.++
T Consensus 119 ----------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 188 (306)
T 2z66_A 119 ----------FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188 (306)
T ss_dssp ----------TTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC
T ss_pred ----------chhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcC
Confidence 0112233445555555555444344555566666666666665333 3344566666666666666655
Q ss_pred eeCccccCCCCCCccCCCccceeeeccccccccccccccccCcccccccCCccceeeeecccCccccCCCCCCCC-CcCe
Q 007330 488 RVGDEFFGIGSDCNIAFPKLKFLRVVDMFEWEEWGFGITRSNVKEDVMVMPCLNYLDIQFCFKLKALPGYLLEIT-ALEK 566 (607)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~-~L~~ 566 (607)
.++...+ ..+++|+.|+++++ .+..++.. .+..+++|++|++++|......|..+..++ +|+.
T Consensus 189 ~~~~~~~-------~~l~~L~~L~L~~N-~l~~~~~~--------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~ 252 (306)
T 2z66_A 189 QLSPTAF-------NSLSSLQVLNMSHN-NFFSLDTF--------PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF 252 (306)
T ss_dssp EECTTTT-------TTCTTCCEEECTTS-CCSBCCSG--------GGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCE
T ss_pred CcCHHHh-------cCCCCCCEEECCCC-ccCccChh--------hccCcccCCEeECCCCCCcccCHHHHHhhhccCCE
Confidence 5543333 24566667766665 23333211 144667777777777643344455566653 7777
Q ss_pred EEEecCc
Q 007330 567 LEILCCP 573 (607)
Q Consensus 567 L~l~~c~ 573 (607)
|++++++
T Consensus 253 L~L~~N~ 259 (306)
T 2z66_A 253 LNLTQND 259 (306)
T ss_dssp EECTTCC
T ss_pred EEccCCC
Confidence 7777654
No 51
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.83 E-value=4e-20 Score=198.26 Aligned_cols=119 Identities=18% Similarity=0.094 Sum_probs=86.5
Q ss_pred ceeEEEEEeCCCCCccccccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccccccccccCcccc
Q 007330 191 KFRHSMLVLGRRASFPVSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIPKEKEKLVHL 270 (607)
Q Consensus 191 ~~r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp~~~~~l~~L 270 (607)
.++.+.+.++.+..+|..+. ++|+.|++++|. +.. ++. .+++|++|+|+ +|.++.+|. .+++|
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~--l~~-lp~---~l~~L~~L~Ls------~N~l~~lp~---~l~~L 103 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNN--LTS-LPA---LPPELRTLEVS------GNQLTSLPV---LPPGL 103 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCC--CSC-CCC---CCTTCCEEEEC------SCCCSCCCC---CCTTC
T ss_pred CCcEEEecCCCcCccChhhC--CCCcEEEecCCC--CCC-CCC---cCCCCCEEEcC------CCcCCcCCC---CCCCC
Confidence 46777787777777666554 788888888875 222 222 56788888888 677777775 56788
Q ss_pred cEEecCCCCcccCchhhhcCCcccEeecCCCCCccccccccccccCcccccccccccccCcCC
Q 007330 271 RYLKLSLLMREELPDIVCELFNLQTLEVEHCPRLKRLPQGIGKLVNLRHLIYYYSNLDYMPKG 333 (607)
Q Consensus 271 ~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~l~~lp~~ 333 (607)
++|++++|.+..+|. .+++|++|++++|. +..+|.. +++|++|+++.|.+..+|..
T Consensus 104 ~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~l~~l~~~ 159 (622)
T 3g06_A 104 LELSIFSNPLTHLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQLASLPAL 159 (622)
T ss_dssp CEEEECSCCCCCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCCSCCCCC
T ss_pred CEEECcCCcCCCCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCcCCCcCCc
Confidence 888888888888876 56778888888876 7777764 47788888888777777653
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.83 E-value=6.5e-21 Score=192.50 Aligned_cols=255 Identities=18% Similarity=0.136 Sum_probs=148.2
Q ss_pred CceeEEEecCcccccccccccccc-cccCcccccEEecCCCCcccCc-hhhhcCCcccEeecCCCCCccccccc-ccccc
Q 007330 239 TCLRALKITGKVSWGQNSIYAIPK-EKEKLVHLRYLKLSLLMREELP-DIVCELFNLQTLEVEHCPRLKRLPQG-IGKLV 315 (607)
Q Consensus 239 ~~L~~L~L~~~~~~~~~~l~~lp~-~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~ 315 (607)
++|++|+++ ++.++.+|. .++.+++|++|++++|.+..++ ..++++++|++|++++|. ++.+|.. ++.++
T Consensus 52 ~~L~~L~l~------~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~ 124 (353)
T 2z80_A 52 EAVKSLDLS------NNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLS 124 (353)
T ss_dssp TTCCEEECT------TSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTCT
T ss_pred ccCcEEECC------CCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCCc
Confidence 366666666 556665543 5666666666666666666553 346666666666666665 5556554 56666
Q ss_pred CcccccccccccccCcC--CCCCCCCCCccCcEEecCCccCCCcccccccccccccCceEEEeccCCCCCHhHHHHHHhc
Q 007330 316 NLRHLIYYYSNLDYMPK--GFERLTCLRTLTEFVVSGGKYSGKACNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAELE 393 (607)
Q Consensus 316 ~L~~L~~~~~~l~~lp~--~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~ 393 (607)
+|++|+++.|.+..+|. .+..+++|+.|.
T Consensus 125 ~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~------------------------------------------------- 155 (353)
T 2z80_A 125 SLTFLNLLGNPYKTLGETSLFSHLTKLQILR------------------------------------------------- 155 (353)
T ss_dssp TCSEEECTTCCCSSSCSSCSCTTCTTCCEEE-------------------------------------------------
T ss_pred cCCEEECCCCCCcccCchhhhccCCCCcEEE-------------------------------------------------
Confidence 66666666666666554 344444444443
Q ss_pred CCCCCcceEEEecCCCCCchhcHHHHhhcCCCCCCcceEEEeecCCCCCCChhhhcCCCccEEEEecCCCCCcCCC-CCC
Q 007330 394 KKRNVVDLGLWFDKDEEGEEADHEEIIEALKPHSNLVALDILGFKGKITFPKWIMSLNNLKSLHLRSCEKCEILSP-LGK 472 (607)
Q Consensus 394 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~-l~~ 472 (607)
++.|.... ...+..+..+++|+.|++++|......|..+..+++|++|++++|.....+.. +..
T Consensus 156 ---------l~~n~~~~------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 220 (353)
T 2z80_A 156 ---------VGNMDTFT------KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDV 220 (353)
T ss_dssp ---------EEESSSCC------EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHH
T ss_pred ---------CCCCcccc------ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhh
Confidence 33321000 00112344556677777777766664566677777777777777753322221 234
Q ss_pred CCCCCeeEecCCcCeeeCccccCCCCCCccCCCccceeeeccccccccccccccccCcccccccCCccceeeeecccCcc
Q 007330 473 LPSLETLYIAGMSGKRVGDEFFGIGSDCNIAFPKLKFLRVVDMFEWEEWGFGITRSNVKEDVMVMPCLNYLDIQFCFKLK 552 (607)
Q Consensus 473 l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 552 (607)
+++|+.|++++|.++.++...+... ...+.++.+.+.++. +.... ....|..+..+++|++|++++| .++
T Consensus 221 ~~~L~~L~L~~n~l~~~~~~~l~~~----~~~~~l~~l~L~~~~-l~~~~----l~~l~~~l~~l~~L~~L~Ls~N-~l~ 290 (353)
T 2z80_A 221 TSSVECLELRDTDLDTFHFSELSTG----ETNSLIKKFTFRNVK-ITDES----LFQVMKLLNQISGLLELEFSRN-QLK 290 (353)
T ss_dssp TTTEEEEEEESCBCTTCCCC----------CCCCCCEEEEESCB-CCHHH----HHHHHHHHHTCTTCCEEECCSS-CCC
T ss_pred cccccEEECCCCccccccccccccc----cccchhhcccccccc-ccCcc----hhhhHHHHhcccCCCEEECCCC-CCC
Confidence 6777777777776544433222211 134556666666552 21100 0112233668899999999986 678
Q ss_pred ccCCCC-CCCCCcCeEEEecCcc
Q 007330 553 ALPGYL-LEITALEKLEILCCPI 574 (607)
Q Consensus 553 ~lp~~~-~~l~~L~~L~l~~c~~ 574 (607)
.+|..+ ..+++|++|++++|+-
T Consensus 291 ~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 291 SVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccCHHHHhcCCCCCEEEeeCCCc
Confidence 888775 7889999999988763
No 53
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.82 E-value=2.2e-21 Score=192.66 Aligned_cols=264 Identities=13% Similarity=0.019 Sum_probs=149.8
Q ss_pred eeEEEeeccchhhhhhhhhhhccCCceeEEEecCccccccccccccc-ccccCcccccEEecCCCCcccCchhhhcCCcc
Q 007330 215 LRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIP-KEKEKLVHLRYLKLSLLMREELPDIVCELFNL 293 (607)
Q Consensus 215 L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L 293 (607)
++.+++..+. ....+...+..+++|++|+++ ++.+..++ ..++.+++|++|++++|.+..+++ +..+++|
T Consensus 12 l~i~~ls~~~--l~~~~~~~~~~~~~L~~L~L~------~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L 82 (317)
T 3o53_A 12 YKIEKVTDSS--LKQALASLRQSAWNVKELDLS------GNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTL 82 (317)
T ss_dssp EEEESCCTTT--HHHHHHHHHTTGGGCSEEECT------TSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTC
T ss_pred eeEeeccccc--hhhhHHHHhccCCCCCEEECc------CCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCC
Confidence 3334444443 445556666777788888888 77777664 577888888888888888877765 7888888
Q ss_pred cEeecCCCCCccccccccccccCcccccccccccccCcCCCCCCCCCCccCcEEecCCccCCCcccccccccccccCceE
Q 007330 294 QTLEVEHCPRLKRLPQGIGKLVNLRHLIYYYSNLDYMPKGFERLTCLRTLTEFVVSGGKYSGKACNIEGLRHLNHLGGVF 373 (607)
Q Consensus 294 ~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~~l 373 (607)
++|++++|. ++.+| ..++|++|+++.|.+..++... +++|+.|. ++++.+.....
T Consensus 83 ~~L~Ls~n~-l~~l~----~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~---l~~N~l~~~~~--------------- 137 (317)
T 3o53_A 83 RTLDLNNNY-VQELL----VGPSIETLHAANNNISRVSCSR--GQGKKNIY---LANNKITMLRD--------------- 137 (317)
T ss_dssp CEEECCSSE-EEEEE----ECTTCCEEECCSSCCSEEEECC--CSSCEEEE---CCSSCCCSGGG---------------
T ss_pred CEEECcCCc-ccccc----CCCCcCEEECCCCccCCcCccc--cCCCCEEE---CCCCCCCCccc---------------
Confidence 888888886 66655 3478888888888777665432 44444443 55554322111
Q ss_pred EEeccCCCCCHhHHHHHHhcCCCCCcceEEEecCCCCCchhcHHHHhhcC-CCCCCcceEEEeecCCCCCCChhhhcCCC
Q 007330 374 RITGLGNVTDVDEAENAELEKKRNVVDLGLWFDKDEEGEEADHEEIIEAL-KPHSNLVALDILGFKGKITFPKWIMSLNN 452 (607)
Q Consensus 374 ~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~lp~~l~~l~~ 452 (607)
..+..+++|+.|++++|..... .+..+ ..+++|+.|++++|.+.. +|.. ..+++
T Consensus 138 ----------------~~~~~l~~L~~L~Ls~N~l~~~-------~~~~~~~~l~~L~~L~L~~N~l~~-~~~~-~~l~~ 192 (317)
T 3o53_A 138 ----------------LDEGCRSRVQYLDLKLNEIDTV-------NFAELAASSDTLEHLNLQYNFIYD-VKGQ-VVFAK 192 (317)
T ss_dssp ----------------BCTGGGSSEEEEECTTSCCCEE-------EGGGGGGGTTTCCEEECTTSCCCE-EECC-CCCTT
T ss_pred ----------------hhhhccCCCCEEECCCCCCCcc-------cHHHHhhccCcCCEEECCCCcCcc-cccc-ccccc
Confidence 0011223344444444432110 01111 234566666666666554 3322 23566
Q ss_pred ccEEEEecCCCCCcCCCCCCCCCCCeeEecCCcCeeeCccccCCCCCCccCCCccceeeecccccc-ccccccccccCcc
Q 007330 453 LKSLHLRSCEKCEILSPLGKLPSLETLYIAGMSGKRVGDEFFGIGSDCNIAFPKLKFLRVVDMFEW-EEWGFGITRSNVK 531 (607)
Q Consensus 453 L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l-~~~~~~~~~~~~~ 531 (607)
|++|+|++|.....++.+..+++|++|++++|.++.++..+ ..+++|+.|++++++-. ...+
T Consensus 193 L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~--------~~l~~L~~L~l~~N~~~~~~~~--------- 255 (317)
T 3o53_A 193 LKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKAL--------RFSQNLEHFDLRGNGFHCGTLR--------- 255 (317)
T ss_dssp CCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTC--------CCCTTCCEEECTTCCCBHHHHH---------
T ss_pred CCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHh--------hcCCCCCEEEccCCCccCcCHH---------
Confidence 66666666654444444555666666666666655555432 14556666666665322 1111
Q ss_pred cccccCCccceeeeecccCcccc
Q 007330 532 EDVMVMPCLNYLDIQFCFKLKAL 554 (607)
Q Consensus 532 ~~~~~~~~L~~L~l~~c~~l~~l 554 (607)
..+..+++|+.|++.+|+.++..
T Consensus 256 ~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 256 DFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHSS
T ss_pred HHHhccccceEEECCCchhccCC
Confidence 12445666666666655555443
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.82 E-value=1.8e-20 Score=185.26 Aligned_cols=87 Identities=21% Similarity=0.175 Sum_probs=48.6
Q ss_pred cCCCCCCcceEEEeecCCCCCCChhhhcCCCccEEEEecCCCCCcCC-CCCCCCCCCeeEecCCcCeeeCccccCCCCCC
Q 007330 422 ALKPHSNLVALDILGFKGKITFPKWIMSLNNLKSLHLRSCEKCEILS-PLGKLPSLETLYIAGMSGKRVGDEFFGIGSDC 500 (607)
Q Consensus 422 ~l~~~~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~ 500 (607)
.+..+++|+.|++++|.+....|.++..+++|+.|++++|......+ .+..+++|++|++++|.+.......+.
T Consensus 170 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~----- 244 (306)
T 2z66_A 170 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ----- 244 (306)
T ss_dssp CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC-----
T ss_pred HHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHH-----
Confidence 44455666666666666655335556666666666666665433222 355666666666666664443332221
Q ss_pred ccCC-Cccceeeeccc
Q 007330 501 NIAF-PKLKFLRVVDM 515 (607)
Q Consensus 501 ~~~~-~~L~~L~l~~~ 515 (607)
.+ ++|++|+++++
T Consensus 245 --~~~~~L~~L~L~~N 258 (306)
T 2z66_A 245 --HFPSSLAFLNLTQN 258 (306)
T ss_dssp --CCCTTCCEEECTTC
T ss_pred --hhhccCCEEEccCC
Confidence 33 36666666665
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.82 E-value=1.2e-19 Score=189.47 Aligned_cols=146 Identities=22% Similarity=0.234 Sum_probs=96.2
Q ss_pred eEEEEEeCCCCCccccccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCccccccccccccc-ccccCccccc
Q 007330 193 RHSMLVLGRRASFPVSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIP-KEKEKLVHLR 271 (607)
Q Consensus 193 r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp-~~~~~l~~L~ 271 (607)
+.+...+..+..+|..+. ++++.|++++|. +....+..|..+++|++|+|+ ++.+..++ ..+.++++|+
T Consensus 57 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~--i~~~~~~~~~~l~~L~~L~Ls------~n~i~~~~~~~~~~l~~L~ 126 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGIP--SNTRYLNLMENN--IQMIQADTFRHLHHLEVLQLG------RNSIRQIEVGAFNGLASLN 126 (452)
T ss_dssp CEEECCSSCCSSCCSCCC--TTCSEEECCSSC--CCEECTTTTTTCTTCCEEECC------SSCCCEECTTTTTTCTTCC
T ss_pred cEEEECCCCcCccCCCCC--CCccEEECcCCc--CceECHHHcCCCCCCCEEECC------CCccCCcChhhccCcccCC
Confidence 455555555555555442 677888887775 444445557778888888888 66776663 5677788888
Q ss_pred EEecCCCCcccCchh-hhcCCcccEeecCCCCCcccccc-ccccccCcccccccc-cccccCcCC-CCCCCCCCccCcEE
Q 007330 272 YLKLSLLMREELPDI-VCELFNLQTLEVEHCPRLKRLPQ-GIGKLVNLRHLIYYY-SNLDYMPKG-FERLTCLRTLTEFV 347 (607)
Q Consensus 272 ~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~~~~-~~l~~lp~~-i~~l~~L~~L~~~~ 347 (607)
+|+|++|.+..+|.. +.++++|++|+|++|. +..+|. .+..+++|++|+++. +.+..+|.. +..+++|+.|.
T Consensus 127 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~--- 202 (452)
T 3zyi_A 127 TLELFDNWLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLN--- 202 (452)
T ss_dssp EEECCSSCCSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEE---
T ss_pred EEECCCCcCCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEE---
Confidence 888888887777665 6778888888888876 666654 467778888888554 555666543 44444444443
Q ss_pred ecCCc
Q 007330 348 VSGGK 352 (607)
Q Consensus 348 ~~~~~ 352 (607)
++++.
T Consensus 203 L~~n~ 207 (452)
T 3zyi_A 203 LGMCN 207 (452)
T ss_dssp CTTSC
T ss_pred CCCCc
Confidence 55544
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.81 E-value=5.3e-19 Score=184.71 Aligned_cols=76 Identities=18% Similarity=0.327 Sum_probs=38.6
Q ss_pred ccccccccccccCcccccEEecCCCCcccC-chhhhcCCcccEeecCCCCCccccc-cccccccCcccccccccccccCc
Q 007330 254 QNSIYAIPKEKEKLVHLRYLKLSLLMREEL-PDIVCELFNLQTLEVEHCPRLKRLP-QGIGKLVNLRHLIYYYSNLDYMP 331 (607)
Q Consensus 254 ~~~l~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~~~~~~l~~lp 331 (607)
+..++.+|..+. .+|++|+|++|.+..+ |..+.++++|++|+|++|. +..++ ..+..+++|++|+++.|.+..+|
T Consensus 63 ~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 139 (452)
T 3zyi_A 63 RRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDNWLTVIP 139 (452)
T ss_dssp SSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCSBCC
T ss_pred CCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCc-cCCcChhhccCcccCCEEECCCCcCCccC
Confidence 444555554332 4555555555555544 2335555555555555554 33332 34455555555555555555554
Q ss_pred C
Q 007330 332 K 332 (607)
Q Consensus 332 ~ 332 (607)
.
T Consensus 140 ~ 140 (452)
T 3zyi_A 140 S 140 (452)
T ss_dssp T
T ss_pred h
Confidence 3
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.81 E-value=2.1e-19 Score=187.07 Aligned_cols=146 Identities=23% Similarity=0.291 Sum_probs=91.8
Q ss_pred eEEEEEeCCCCCccccccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCccccccccccccc-ccccCccccc
Q 007330 193 RHSMLVLGRRASFPVSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIP-KEKEKLVHLR 271 (607)
Q Consensus 193 r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp-~~~~~l~~L~ 271 (607)
+.+...+..+..+|..+. ++++.|++++|. +....+..|..+++|++|+|+ ++.+..++ ..+.++++|+
T Consensus 46 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~--i~~~~~~~~~~l~~L~~L~Ls------~n~i~~i~~~~~~~l~~L~ 115 (440)
T 3zyj_A 46 SKVICVRKNLREVPDGIS--TNTRLLNLHENQ--IQIIKVNSFKHLRHLEILQLS------RNHIRTIEIGAFNGLANLN 115 (440)
T ss_dssp CEEECCSCCCSSCCSCCC--TTCSEEECCSCC--CCEECTTTTSSCSSCCEEECC------SSCCCEECGGGGTTCSSCC
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEEccCCc--CCeeCHHHhhCCCCCCEEECC------CCcCCccChhhccCCccCC
Confidence 445555555555555443 567777777775 333344556777777777777 66666663 5677777777
Q ss_pred EEecCCCCcccCch-hhhcCCcccEeecCCCCCcccccc-ccccccCcccccccc-cccccCcC-CCCCCCCCCccCcEE
Q 007330 272 YLKLSLLMREELPD-IVCELFNLQTLEVEHCPRLKRLPQ-GIGKLVNLRHLIYYY-SNLDYMPK-GFERLTCLRTLTEFV 347 (607)
Q Consensus 272 ~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~~~~-~~l~~lp~-~i~~l~~L~~L~~~~ 347 (607)
+|+|++|.+..+|. .+..+++|++|+|++|. +..+|. .+..+++|++|+++. +.+..++. .+..+++|+.|.
T Consensus 116 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~--- 191 (440)
T 3zyj_A 116 TLELFDNRLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN--- 191 (440)
T ss_dssp EEECCSSCCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEE---
T ss_pred EEECCCCcCCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeec---
Confidence 77777777777765 36777777777777776 665554 466777777777544 45555554 244444444443
Q ss_pred ecCCc
Q 007330 348 VSGGK 352 (607)
Q Consensus 348 ~~~~~ 352 (607)
++++.
T Consensus 192 L~~n~ 196 (440)
T 3zyj_A 192 LAMCN 196 (440)
T ss_dssp CTTSC
T ss_pred CCCCc
Confidence 55444
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.81 E-value=1.7e-19 Score=182.16 Aligned_cols=265 Identities=17% Similarity=0.134 Sum_probs=163.9
Q ss_pred EEEEeCCCCCccccccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccccc-cccccCcccccEE
Q 007330 195 SMLVLGRRASFPVSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAI-PKEKEKLVHLRYL 273 (607)
Q Consensus 195 l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~l-p~~~~~l~~L~~L 273 (607)
....++.+..+|..+. ++|++|++++|. .....+..+..+++|++|+++ ++.+..+ |..++.+++|++|
T Consensus 36 c~~~~~~l~~iP~~~~--~~L~~L~l~~n~--i~~~~~~~~~~l~~L~~L~L~------~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLT--EAVKSLDLSNNR--ITYISNSDLQRCVNLQALVLT------SNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp EECCSTTCSSCCTTCC--TTCCEEECTTSC--CCEECTTTTTTCTTCCEEECT------TSCCCEECTTTTTTCTTCCEE
T ss_pred eeCCCCCccccccccc--ccCcEEECCCCc--CcccCHHHhccCCCCCEEECC------CCccCccCHhhcCCCCCCCEE
Confidence 4445556666666543 589999999886 444455568889999999999 7788777 4568899999999
Q ss_pred ecCCCCcccCchh-hhcCCcccEeecCCCCCcccccc--ccccccCccccccccc-ccccCc-CCCCCCCCCCccCcEEe
Q 007330 274 KLSLLMREELPDI-VCELFNLQTLEVEHCPRLKRLPQ--GIGKLVNLRHLIYYYS-NLDYMP-KGFERLTCLRTLTEFVV 348 (607)
Q Consensus 274 ~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~--~i~~l~~L~~L~~~~~-~l~~lp-~~i~~l~~L~~L~~~~~ 348 (607)
++++|.++.+|.. ++++++|++|++++|. ++.+|. .+..+++|++|+++.| .+..++ ..+..+++|+.|. +
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~---l 181 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELE---I 181 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE---E
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEE---C
Confidence 9999999999877 7899999999999987 788886 6788999999997776 466664 4566666666655 6
Q ss_pred cCCccCCC-cccccccccccccCceEEEeccCCCCCHhHHHHHHhcCCCCCcceEEEecCCCCCchhcHHHHhhcCCCCC
Q 007330 349 SGGKYSGK-ACNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAELEKKRNVVDLGLWFDKDEEGEEADHEEIIEALKPHS 427 (607)
Q Consensus 349 ~~~~~~~~-~~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~ 427 (607)
+++.+.+. +..+..+++|+ .+.+.+.. +... ....+..+++|+.|+++.|......... .......+
T Consensus 182 ~~n~l~~~~~~~l~~l~~L~----~L~l~~n~-l~~~---~~~~~~~~~~L~~L~L~~n~l~~~~~~~----l~~~~~~~ 249 (353)
T 2z80_A 182 DASDLQSYEPKSLKSIQNVS----HLILHMKQ-HILL---LEIFVDVTSSVECLELRDTDLDTFHFSE----LSTGETNS 249 (353)
T ss_dssp EETTCCEECTTTTTTCSEEE----EEEEECSC-STTH---HHHHHHHTTTEEEEEEESCBCTTCCCC----------CCC
T ss_pred CCCCcCccCHHHHhccccCC----eecCCCCc-cccc---hhhhhhhcccccEEECCCCccccccccc----cccccccc
Confidence 66654332 22333333333 44444432 1221 1222334566666666666543211000 01112334
Q ss_pred CcceEEEeecCCCC----CCChhhhcCCCccEEEEecCCCCCcCCC-CCCCCCCCeeEecCCc
Q 007330 428 NLVALDILGFKGKI----TFPKWIMSLNNLKSLHLRSCEKCEILSP-LGKLPSLETLYIAGMS 485 (607)
Q Consensus 428 ~L~~L~l~~~~~~~----~lp~~l~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~ 485 (607)
.++.++++++.... .+|.++..+++|+.|++++|.....++. ++.+++|++|++++|+
T Consensus 250 ~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 250 LIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred hhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCC
Confidence 45555555554432 1445555666666666666644333333 3556666666666654
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.81 E-value=7e-19 Score=183.09 Aligned_cols=109 Identities=15% Similarity=0.143 Sum_probs=60.1
Q ss_pred CCCCCCcceEEEeecCCCCCCChhhhcCCCccEEEEecCCCCCc-CCCCCCCCCCCeeEecCCcCeeeCccccCCCCCCc
Q 007330 423 LKPHSNLVALDILGFKGKITFPKWIMSLNNLKSLHLRSCEKCEI-LSPLGKLPSLETLYIAGMSGKRVGDEFFGIGSDCN 501 (607)
Q Consensus 423 l~~~~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~-~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~ 501 (607)
+..+++|+.|++++|.+.. +|. +..+++|+.|+|++|..... +..+..+++|+.|++++|.++.++...+.
T Consensus 181 ~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~------ 252 (440)
T 3zyj_A 181 FEGLSNLRYLNLAMCNLRE-IPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFD------ 252 (440)
T ss_dssp TTTCSSCCEEECTTSCCSS-CCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSST------
T ss_pred hhcccccCeecCCCCcCcc-ccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhc------
Confidence 4445666666666666655 553 45566666666666644333 23355666666666666665555444332
Q ss_pred cCCCccceeeeccccccccccccccccCcccccccCCccceeeeeccc
Q 007330 502 IAFPKLKFLRVVDMFEWEEWGFGITRSNVKEDVMVMPCLNYLDIQFCF 549 (607)
Q Consensus 502 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 549 (607)
.+++|+.|+++++ .+..++.. .+..+++|+.|++++++
T Consensus 253 -~l~~L~~L~L~~N-~l~~~~~~--------~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 253 -NLQSLVEINLAHN-NLTLLPHD--------LFTPLHHLERIHLHHNP 290 (440)
T ss_dssp -TCTTCCEEECTTS-CCCCCCTT--------TTSSCTTCCEEECCSSC
T ss_pred -CCCCCCEEECCCC-CCCccChh--------HhccccCCCEEEcCCCC
Confidence 4556666666665 34433322 13455666666666543
No 60
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.80 E-value=1.1e-21 Score=206.14 Aligned_cols=363 Identities=17% Similarity=0.110 Sum_probs=228.0
Q ss_pred cCceeEEEEEeCCCCCcc--ccccCCCCeeEEEeeccchh--hhhhhhhhhccCCceeEEEecCcccccccccccc-ccc
Q 007330 189 LEKFRHSMLVLGRRASFP--VSIFKAKKLRSLLIHSEFEV--SFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAI-PKE 263 (607)
Q Consensus 189 ~~~~r~l~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~l-p~~ 263 (607)
+.+++++.+.++.+.... ..+..+++|++|++++|... ....++..+..+++|++|+++ ++.+... +..
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls------~n~l~~~~~~~ 75 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR------SNELGDVGVHC 75 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECT------TCCCHHHHHHH
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCC------CCcCChHHHHH
Confidence 456788888888765432 23667889999999988621 112456667888999999999 5555432 212
Q ss_pred c-cCcc----cccEEecCCCCcc-----cCchhhhcCCcccEeecCCCCCccc-cccccc-----cccCccccccccccc
Q 007330 264 K-EKLV----HLRYLKLSLLMRE-----ELPDIVCELFNLQTLEVEHCPRLKR-LPQGIG-----KLVNLRHLIYYYSNL 327 (607)
Q Consensus 264 ~-~~l~----~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~l~~-lp~~i~-----~l~~L~~L~~~~~~l 327 (607)
+ ..+. +|++|++++|.+. .+|..+.++++|++|++++|. +.. -+..+. ..++|++|+++.|.+
T Consensus 76 l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 154 (461)
T 1z7x_W 76 VLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSL 154 (461)
T ss_dssp HHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCC
Confidence 2 2344 6999999999876 467778899999999999987 542 222222 356799999888877
Q ss_pred cc-----CcCCCCCCCCCCccCcEEecCCccCCCcc-cc-cccc-cccccCceEEEeccCCCCCHhHHHHHHhcCCCCCc
Q 007330 328 DY-----MPKGFERLTCLRTLTEFVVSGGKYSGKAC-NI-EGLR-HLNHLGGVFRITGLGNVTDVDEAENAELEKKRNVV 399 (607)
Q Consensus 328 ~~-----lp~~i~~l~~L~~L~~~~~~~~~~~~~~~-~~-~~l~-~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~ 399 (607)
.. ++..+..+++|+.|. ++++.+..... .+ ..+. ....|+ .+.+.++.-...........+..+++|+
T Consensus 155 ~~~~~~~l~~~l~~~~~L~~L~---L~~n~i~~~~~~~l~~~l~~~~~~L~-~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 230 (461)
T 1z7x_W 155 SAASCEPLASVLRAKPDFKELT---VSNNDINEAGVRVLCQGLKDSPCQLE-ALKLESCGVTSDNCRDLCGIVASKASLR 230 (461)
T ss_dssp BGGGHHHHHHHHHHCTTCCEEE---CCSSBCHHHHHHHHHHHHHHSCCCCC-EEECTTSCCBTTHHHHHHHHHHHCTTCC
T ss_pred CHHHHHHHHHHHhhCCCCCEEE---CcCCCcchHHHHHHHHHHhcCCCCce-EEEccCCCCcHHHHHHHHHHHHhCCCcc
Confidence 64 344455556666655 66665322111 11 1111 122444 6777665433333334556677889999
Q ss_pred ceEEEecCCCCCchhcHHHHhh-cCCCCCCcceEEEeecCCCCC----CChhhhcCCCccEEEEecCCCCCc-CCC----
Q 007330 400 DLGLWFDKDEEGEEADHEEIIE-ALKPHSNLVALDILGFKGKIT----FPKWIMSLNNLKSLHLRSCEKCEI-LSP---- 469 (607)
Q Consensus 400 ~L~l~~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~----lp~~l~~l~~L~~L~L~~~~~~~~-~~~---- 469 (607)
.|++++|.... .....+.. ....+++|++|++++|.+... ++..+..+++|++|++++|..... +..
T Consensus 231 ~L~Ls~n~l~~---~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 307 (461)
T 1z7x_W 231 ELALGSNKLGD---VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCET 307 (461)
T ss_dssp EEECCSSBCHH---HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHH
T ss_pred EEeccCCcCCh---HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHH
Confidence 99999886421 11112222 334578999999999876652 466666789999999999864321 111
Q ss_pred -CCCCCCCCeeEecCCcCeeeCccccCCCCCCccCCCccceeeeccccccccccccccccCcccccc-cCCccceeeeec
Q 007330 470 -LGKLPSLETLYIAGMSGKRVGDEFFGIGSDCNIAFPKLKFLRVVDMFEWEEWGFGITRSNVKEDVM-VMPCLNYLDIQF 547 (607)
Q Consensus 470 -l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~ 547 (607)
....++|++|++++|.++..+...+.. ....+++|++|+++++ .+...... .....+. ..++|++|++++
T Consensus 308 l~~~~~~L~~L~L~~n~l~~~~~~~l~~---~l~~~~~L~~L~Ls~n-~i~~~~~~----~l~~~l~~~~~~L~~L~L~~ 379 (461)
T 1z7x_W 308 LLEPGCQLESLWVKSCSFTAACCSHFSS---VLAQNRFLLELQISNN-RLEDAGVR----ELCQGLGQPGSVLRVLWLAD 379 (461)
T ss_dssp HTSTTCCCCEEECTTSCCBGGGHHHHHH---HHHHCSSCCEEECCSS-BCHHHHHH----HHHHHHTSTTCCCCEEECTT
T ss_pred hccCCccceeeEcCCCCCchHHHHHHHH---HHhhCCCccEEEccCC-ccccccHH----HHHHHHcCCCCceEEEECCC
Confidence 123468999999999855432211110 0024688999999987 34332210 0000011 267999999999
Q ss_pred ccCcc-----ccCCCCCCCCCcCeEEEecCcc
Q 007330 548 CFKLK-----ALPGYLLEITALEKLEILCCPI 574 (607)
Q Consensus 548 c~~l~-----~lp~~~~~l~~L~~L~l~~c~~ 574 (607)
|. ++ .+|..+..+++|++|++++|+-
T Consensus 380 n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 380 CD-VSDSSCSSLAATLLANHSLRELDLSNNCL 410 (461)
T ss_dssp SC-CCHHHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred CC-CChhhHHHHHHHHHhCCCccEEECCCCCC
Confidence 74 55 5777777789999999998863
No 61
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.79 E-value=1.5e-18 Score=186.14 Aligned_cols=237 Identities=19% Similarity=0.170 Sum_probs=158.1
Q ss_pred CceeEEEecCcccccccccccccccccCcccccEEecCCCCcccCchhhhcCCcccEeecCCCCCccccccccccccCcc
Q 007330 239 TCLRALKITGKVSWGQNSIYAIPKEKEKLVHLRYLKLSLLMREELPDIVCELFNLQTLEVEHCPRLKRLPQGIGKLVNLR 318 (607)
Q Consensus 239 ~~L~~L~L~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~ 318 (607)
++|++|+++ ++.++.+|. .+++|++|+|++|.++.+|. .+++|++|++++|. +..+|. .+++|+
T Consensus 61 ~~L~~L~L~------~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-l~~l~~---~l~~L~ 124 (622)
T 3g06_A 61 AHITTLVIP------DNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNP-LTHLPA---LPSGLC 124 (622)
T ss_dssp TTCSEEEEC------SCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCC-CCCCCC---CCTTCC
T ss_pred CCCcEEEec------CCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCc-CCCCCC---CCCCcC
Confidence 455666665 555555554 34556666666665555554 45556666666554 555554 445555
Q ss_pred cccccccccccCcCCCCCCCCCCccCcEEecCCccCCCcccccccccccccCceEEEeccCCCCCHhHHHHHHhcCCCCC
Q 007330 319 HLIYYYSNLDYMPKGFERLTCLRTLTEFVVSGGKYSGKACNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAELEKKRNV 398 (607)
Q Consensus 319 ~L~~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L 398 (607)
.|+++.|.+..+|..+ ++|+.|. ++++.+.+.+ ....+|
T Consensus 125 ~L~L~~N~l~~lp~~l---~~L~~L~---Ls~N~l~~l~-----------------------------------~~~~~L 163 (622)
T 3g06_A 125 KLWIFGNQLTSLPVLP---PGLQELS---VSDNQLASLP-----------------------------------ALPSEL 163 (622)
T ss_dssp EEECCSSCCSCCCCCC---TTCCEEE---CCSSCCSCCC-----------------------------------CCCTTC
T ss_pred EEECCCCCCCcCCCCC---CCCCEEE---CcCCcCCCcC-----------------------------------CccCCC
Confidence 5665555555555432 3333332 4444322111 123467
Q ss_pred cceEEEecCCCCCchhcHHHHhhcCCCCCCcceEEEeecCCCCCCChhhhcCCCccEEEEecCCCCCcCCCCCCCCCCCe
Q 007330 399 VDLGLWFDKDEEGEEADHEEIIEALKPHSNLVALDILGFKGKITFPKWIMSLNNLKSLHLRSCEKCEILSPLGKLPSLET 478 (607)
Q Consensus 399 ~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~ 478 (607)
+.|+++.|.... ++ ..+++|+.|++++|.+.. +|. .+++|+.|++++|.... ++. .+++|+.
T Consensus 164 ~~L~L~~N~l~~--------l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~~--~~~~L~~ 225 (622)
T 3g06_A 164 CKLWAYNNQLTS--------LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LPA--LPSGLKE 225 (622)
T ss_dssp CEEECCSSCCSC--------CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CCC--CCTTCCE
T ss_pred CEEECCCCCCCC--------Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc-cCC--CCCCCCE
Confidence 777777766532 22 356899999999999887 775 35799999999996443 433 3589999
Q ss_pred eEecCCcCeeeCccccCCCCCCccCCCccceeeeccccccccccccccccCcccccccCCccceeeeecccCccccCCCC
Q 007330 479 LYIAGMSGKRVGDEFFGIGSDCNIAFPKLKFLRVVDMFEWEEWGFGITRSNVKEDVMVMPCLNYLDIQFCFKLKALPGYL 558 (607)
Q Consensus 479 L~L~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~ 558 (607)
|++++|.++.++. .+++|+.|+++++ .+..++. .+++|+.|++++| .++.+|..+
T Consensus 226 L~Ls~N~L~~lp~-----------~l~~L~~L~Ls~N-~L~~lp~------------~~~~L~~L~Ls~N-~L~~lp~~l 280 (622)
T 3g06_A 226 LIVSGNRLTSLPV-----------LPSELKELMVSGN-RLTSLPM------------LPSGLLSLSVYRN-QLTRLPESL 280 (622)
T ss_dssp EECCSSCCSCCCC-----------CCTTCCEEECCSS-CCSCCCC------------CCTTCCEEECCSS-CCCSCCGGG
T ss_pred EEccCCccCcCCC-----------CCCcCcEEECCCC-CCCcCCc------------ccccCcEEeCCCC-CCCcCCHHH
Confidence 9999998777661 6789999999997 5655543 5789999999996 688999989
Q ss_pred CCCCCcCeEEEecCcch
Q 007330 559 LEITALEKLEILCCPIL 575 (607)
Q Consensus 559 ~~l~~L~~L~l~~c~~l 575 (607)
..+++|+.|++++|+--
T Consensus 281 ~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 281 IHLSSETTVNLEGNPLS 297 (622)
T ss_dssp GGSCTTCEEECCSCCCC
T ss_pred hhccccCEEEecCCCCC
Confidence 99999999999999753
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.79 E-value=1.9e-19 Score=175.91 Aligned_cols=128 Identities=23% Similarity=0.250 Sum_probs=69.1
Q ss_pred eEEEEEeCCCCCccccccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccccc-cccccCccccc
Q 007330 193 RHSMLVLGRRASFPVSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAI-PKEKEKLVHLR 271 (607)
Q Consensus 193 r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~l-p~~~~~l~~L~ 271 (607)
+.+......+..+|..+ .+++++|+++++. .....+..+..+++|++|+++ ++.+..+ |..++.+++|+
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~--i~~~~~~~~~~~~~L~~L~l~------~n~l~~~~~~~~~~l~~L~ 83 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNR--ISHVPAASFRACRNLTILWLH------SNVLARIDAAAFTGLALLE 83 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSC--CCEECTTTTTTCTTCCEEECC------SSCCCEECTTTTTTCTTCC
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCc--CCccCHHHcccCCCCCEEECC------CCccceeCHhhcCCccCCC
Confidence 34444444444444322 3456666666654 333333445566666666666 5555554 45556666666
Q ss_pred EEecCCCC-cccC-chhhhcCCcccEeecCCCCCcccc-ccccccccCcccccccccccccCc
Q 007330 272 YLKLSLLM-REEL-PDIVCELFNLQTLEVEHCPRLKRL-PQGIGKLVNLRHLIYYYSNLDYMP 331 (607)
Q Consensus 272 ~L~L~~~~-i~~l-p~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~~~~~~l~~lp 331 (607)
+|++++|. +..+ |..+.++++|++|++++|. +..+ |..+..+++|++|+++.|.+..+|
T Consensus 84 ~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 145 (285)
T 1ozn_A 84 QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQALP 145 (285)
T ss_dssp EEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred EEeCCCCCCccccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCCcccccC
Confidence 66666665 5555 3445566666666666655 3333 344555666666665555555444
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.79 E-value=2e-20 Score=185.77 Aligned_cols=247 Identities=15% Similarity=0.101 Sum_probs=180.8
Q ss_pred ccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccccccccccCcccccEEecCCCCcccCchhhh
Q 007330 209 IFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIPKEKEKLVHLRYLKLSLLMREELPDIVC 288 (607)
Q Consensus 209 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~ 288 (607)
+..+++|+.|++++|. .....+..+..+++|++|+++ ++.+..++. +..+++|++|++++|.+..+|.
T Consensus 30 ~~~~~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~Ls------~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~--- 97 (317)
T 3o53_A 30 RQSAWNVKELDLSGNP--LSQISAADLAPFTKLELLNLS------SNVLYETLD-LESLSTLRTLDLNNNYVQELLV--- 97 (317)
T ss_dssp HTTGGGCSEEECTTSC--CCCCCHHHHTTCTTCCEEECT------TSCCEEEEE-ETTCTTCCEEECCSSEEEEEEE---
T ss_pred hccCCCCCEEECcCCc--cCcCCHHHhhCCCcCCEEECC------CCcCCcchh-hhhcCCCCEEECcCCccccccC---
Confidence 3456789999998886 444456668889999999998 777776654 8888999999999998887763
Q ss_pred cCCcccEeecCCCCCccccccccccccCcccccccccccccCcC-CCCCCCCCCccCcEEecCCccCCCccccccccccc
Q 007330 289 ELFNLQTLEVEHCPRLKRLPQGIGKLVNLRHLIYYYSNLDYMPK-GFERLTCLRTLTEFVVSGGKYSGKACNIEGLRHLN 367 (607)
Q Consensus 289 ~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~l~~lp~-~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~ 367 (607)
+++|++|++++|. +..+|.. .+++|++|+++.|.+..++. .++.+++|+.|. ++++.+......
T Consensus 98 -~~~L~~L~l~~n~-l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~---Ls~N~l~~~~~~-------- 162 (317)
T 3o53_A 98 -GPSIETLHAANNN-ISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLD---LKLNEIDTVNFA-------- 162 (317)
T ss_dssp -CTTCCEEECCSSC-CSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEE---CTTSCCCEEEGG--------
T ss_pred -CCCcCEEECCCCc-cCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEE---CCCCCCCcccHH--------
Confidence 4889999999987 7766543 47889999988888887754 455566665554 666653221100
Q ss_pred ccCceEEEeccCCCCCHhHHHHHHhcCCCCCcceEEEecCCCCCchhcHHHHhhcCCCCCCcceEEEeecCCCCCCChhh
Q 007330 368 HLGGVFRITGLGNVTDVDEAENAELEKKRNVVDLGLWFDKDEEGEEADHEEIIEALKPHSNLVALDILGFKGKITFPKWI 447 (607)
Q Consensus 368 ~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~l 447 (607)
.....+++|+.|++++|.... + .....+++|+.|++++|.+.. +|..+
T Consensus 163 ----------------------~~~~~l~~L~~L~L~~N~l~~--------~-~~~~~l~~L~~L~Ls~N~l~~-l~~~~ 210 (317)
T 3o53_A 163 ----------------------ELAASSDTLEHLNLQYNFIYD--------V-KGQVVFAKLKTLDLSSNKLAF-MGPEF 210 (317)
T ss_dssp ----------------------GGGGGTTTCCEEECTTSCCCE--------E-ECCCCCTTCCEEECCSSCCCE-ECGGG
T ss_pred ----------------------HHhhccCcCCEEECCCCcCcc--------c-ccccccccCCEEECCCCcCCc-chhhh
Confidence 001234567777777776422 1 233457899999999999988 88888
Q ss_pred hcCCCccEEEEecCCCCCcCCCCCCCCCCCeeEecCCcCe--eeCccccCCCCCCccCCCccceeeecccccccccc
Q 007330 448 MSLNNLKSLHLRSCEKCEILSPLGKLPSLETLYIAGMSGK--RVGDEFFGIGSDCNIAFPKLKFLRVVDMFEWEEWG 522 (607)
Q Consensus 448 ~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~--~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 522 (607)
..+++|+.|++++|.....+..+..+++|+.|++++|++. .++. .+ ..+++|+.|++.++..++...
T Consensus 211 ~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~-~~-------~~~~~L~~l~l~~~~~l~~~~ 279 (317)
T 3o53_A 211 QSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRD-FF-------SKNQRVQTVAKQTVKKLTGQN 279 (317)
T ss_dssp GGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHH-HH-------HTCHHHHHHHHHHHHHHHSSS
T ss_pred cccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHH-HH-------hccccceEEECCCchhccCCc
Confidence 8999999999999976666667889999999999999955 3332 22 368899999998776665443
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.79 E-value=5.4e-20 Score=193.29 Aligned_cols=100 Identities=18% Similarity=0.178 Sum_probs=68.5
Q ss_pred ccCCceeEEEecCcccccccccccc-cccccCcccccEEecCCCCcccCchhhhcCCcccEeecCCCCCccccccccccc
Q 007330 236 DYLTCLRALKITGKVSWGQNSIYAI-PKEKEKLVHLRYLKLSLLMREELPDIVCELFNLQTLEVEHCPRLKRLPQGIGKL 314 (607)
Q Consensus 236 ~~l~~L~~L~L~~~~~~~~~~l~~l-p~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l 314 (607)
..+++|++|+|+ ++.+..+ |..++.+++|++|+|++|.+..+++ ++.+++|++|+|++|. ++.+|. .
T Consensus 31 ~~~~~L~~L~Ls------~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~----~ 98 (487)
T 3oja_A 31 QSAWNVKELDLS------GNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV----G 98 (487)
T ss_dssp TTGGGCCEEECC------SSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEEE----C
T ss_pred ccCCCccEEEee------CCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCCC----C
Confidence 344578888888 6677666 4577788888888888888776665 7788888888888876 666653 3
Q ss_pred cCcccccccccccccCcCCCCCCCCCCccCcEEecCCc
Q 007330 315 VNLRHLIYYYSNLDYMPKGFERLTCLRTLTEFVVSGGK 352 (607)
Q Consensus 315 ~~L~~L~~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~ 352 (607)
++|++|+++.|.+..+|.. .+++|+.|. ++++.
T Consensus 99 ~~L~~L~L~~N~l~~~~~~--~l~~L~~L~---L~~N~ 131 (487)
T 3oja_A 99 PSIETLHAANNNISRVSCS--RGQGKKNIY---LANNK 131 (487)
T ss_dssp TTCCEEECCSSCCCCEEEC--CCSSCEEEE---CCSSC
T ss_pred CCcCEEECcCCcCCCCCcc--ccCCCCEEE---CCCCC
Confidence 7788888777777666543 234444433 55544
No 65
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.78 E-value=1.2e-19 Score=196.81 Aligned_cols=204 Identities=11% Similarity=-0.040 Sum_probs=116.5
Q ss_pred cCceeEEEEEeCCCCCc-cccccC-CCC-eeEEEeeccchhhhhhhhhhhccCCceeEEEecCccccccccccccccccc
Q 007330 189 LEKFRHSMLVLGRRASF-PVSIFK-AKK-LRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIPKEKE 265 (607)
Q Consensus 189 ~~~~r~l~l~~~~~~~~-~~~~~~-~~~-L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp~~~~ 265 (607)
...++++.+.++.+... +..+.. +++ |++|++.++.......+......+++|++|+|++|.. .+.....++....
T Consensus 111 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~-~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 111 LRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSF-SEKDGKWLHELAQ 189 (592)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEE-ECCCSHHHHHHHH
T ss_pred CCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccc-cCcchhHHHHHHh
Confidence 45678888887755421 222333 344 8888888876434444555566888899999884321 1111111333345
Q ss_pred CcccccEEecCCCCcc-----cCchhhhcCCcccEeecCCCCCccccccccccccCccccccccc-cc---ccCcCCCCC
Q 007330 266 KLVHLRYLKLSLLMRE-----ELPDIVCELFNLQTLEVEHCPRLKRLPQGIGKLVNLRHLIYYYS-NL---DYMPKGFER 336 (607)
Q Consensus 266 ~l~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~-~l---~~lp~~i~~ 336 (607)
.+++|++|++++|.+. .++..+.++++|++|++++|. +..+|..+..+++|++|+++.. .. ...+..+..
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 6788888888888865 445556788888999988876 7778877888888888886532 22 122233444
Q ss_pred CCCCCccCcEEecCCccCCCcccccccccccccCceEEEeccCCCCCHhHHHHHHhcCCCCCcceEEE
Q 007330 337 LTCLRTLTEFVVSGGKYSGKACNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAELEKKRNVVDLGLW 404 (607)
Q Consensus 337 l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 404 (607)
+++|+.| .+........+..+..+++|+ .+.+.++. +. .......+..+++|+.|++.
T Consensus 269 ~~~L~~L---~l~~~~~~~l~~~~~~~~~L~----~L~Ls~~~-l~--~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 269 PRKLCRL---GLSYMGPNEMPILFPFAAQIR----KLDLLYAL-LE--TEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp CTTCCEE---EETTCCTTTGGGGGGGGGGCC----EEEETTCC-CC--HHHHHHHHTTCTTCCEEEEE
T ss_pred ccccccc---CccccchhHHHHHHhhcCCCc----EEecCCCc-CC--HHHHHHHHHhCcCCCEEecc
Confidence 4444444 344433222233333333433 55555543 21 11222334556666666665
No 66
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.78 E-value=5.1e-20 Score=199.69 Aligned_cols=347 Identities=14% Similarity=0.048 Sum_probs=221.7
Q ss_pred CceeEEEEEeCCCC---CccccccCCCCeeEEEeeccch--hhhhhhhhhhccCCceeEEEecCcccccccccc-----c
Q 007330 190 EKFRHSMLVLGRRA---SFPVSIFKAKKLRSLLIHSEFE--VSFHVLQGLFDYLTCLRALKITGKVSWGQNSIY-----A 259 (607)
Q Consensus 190 ~~~r~l~l~~~~~~---~~~~~~~~~~~L~~L~l~~~~~--~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~-----~ 259 (607)
.+++++.+.++... .+......+++|++|++++|.. ....++......+++|++|+++ ++.+. .
T Consensus 138 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~------~n~~~~~~~~~ 211 (592)
T 3ogk_B 138 DDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFY------MTEFAKISPKD 211 (592)
T ss_dssp GGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECT------TCCCSSCCHHH
T ss_pred ccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEee------ccCCCccCHHH
Confidence 34788888776521 1122334789999999998851 1122355667789999999998 55543 4
Q ss_pred ccccccCcccccEEecCCCCcccCchhhhcCCcccEeecCCCCCc---cccccccccccCcccccccccccccCcCCCCC
Q 007330 260 IPKEKEKLVHLRYLKLSLLMREELPDIVCELFNLQTLEVEHCPRL---KRLPQGIGKLVNLRHLIYYYSNLDYMPKGFER 336 (607)
Q Consensus 260 lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l---~~lp~~i~~l~~L~~L~~~~~~l~~lp~~i~~ 336 (607)
++..+..+++|++|++++|.+..+|..+.++++|++|+++++... ...+..+..+++|+.|++.......+|..+..
T Consensus 212 l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~ 291 (592)
T 3ogk_B 212 LETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPF 291 (592)
T ss_dssp HHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGG
T ss_pred HHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhh
Confidence 555567889999999999998889988999999999999864422 24455677888888888766655667766666
Q ss_pred CCCCCccCcEEecCCccCCCc--ccccccccccccCceEEEeccCCCCCHhHHHHHHhcCCCCCcceEEEe---------
Q 007330 337 LTCLRTLTEFVVSGGKYSGKA--CNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAELEKKRNVVDLGLWF--------- 405 (607)
Q Consensus 337 l~~L~~L~~~~~~~~~~~~~~--~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~--------- 405 (607)
+++|+.|. ++++.+.... ..+..+++|+ .+.+... ............+++|++|+++.
T Consensus 292 ~~~L~~L~---Ls~~~l~~~~~~~~~~~~~~L~----~L~L~~~----~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~ 360 (592)
T 3ogk_B 292 AAQIRKLD---LLYALLETEDHCTLIQKCPNLE----VLETRNV----IGDRGLEVLAQYCKQLKRLRIERGADEQGMED 360 (592)
T ss_dssp GGGCCEEE---ETTCCCCHHHHHHHHTTCTTCC----EEEEEGG----GHHHHHHHHHHHCTTCCEEEEECCCCSSTTSS
T ss_pred cCCCcEEe---cCCCcCCHHHHHHHHHhCcCCC----EEeccCc----cCHHHHHHHHHhCCCCCEEEeecCcccccccc
Confidence 66666665 6665532111 1123444444 6655521 12233344456788899999983
Q ss_pred -cCCCCCchhcHHHHhhcCCCCCCcceEEEeecCCCCCCChhhh-cCCCccEEEEecCC---CCCcCC-------CCCCC
Q 007330 406 -DKDEEGEEADHEEIIEALKPHSNLVALDILGFKGKITFPKWIM-SLNNLKSLHLRSCE---KCEILS-------PLGKL 473 (607)
Q Consensus 406 -~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~l~-~l~~L~~L~L~~~~---~~~~~~-------~l~~l 473 (607)
+...+ ...+......+++|++|++..+.+....+..+. .+++|+.|+++++. ..+..| .+..+
T Consensus 361 ~~~~~~-----~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~ 435 (592)
T 3ogk_B 361 EEGLVS-----QRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGC 435 (592)
T ss_dssp TTCCCC-----HHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHC
T ss_pred ccCccC-----HHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhC
Confidence 22111 222333334568899999977766554445555 48899999998532 333221 13458
Q ss_pred CCCCeeEecCCc--CeeeCccccCCCCCCccCCCccceeeeccccccccccccccccCcccccccCCccceeeeecccCc
Q 007330 474 PSLETLYIAGMS--GKRVGDEFFGIGSDCNIAFPKLKFLRVVDMFEWEEWGFGITRSNVKEDVMVMPCLNYLDIQFCFKL 551 (607)
Q Consensus 474 ~~L~~L~L~~~~--~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l 551 (607)
++|++|+++.|. +.......+. ..+++|++|+++++. +.... .+.....+++|++|++++|+ +
T Consensus 436 ~~L~~L~L~~~~~~l~~~~~~~~~------~~~~~L~~L~L~~n~-l~~~~-------~~~~~~~~~~L~~L~l~~n~-l 500 (592)
T 3ogk_B 436 KKLRRFAFYLRQGGLTDLGLSYIG------QYSPNVRWMLLGYVG-ESDEG-------LMEFSRGCPNLQKLEMRGCC-F 500 (592)
T ss_dssp TTCCEEEEECCGGGCCHHHHHHHH------HSCTTCCEEEECSCC-SSHHH-------HHHHHTCCTTCCEEEEESCC-C
T ss_pred CCCCEEEEecCCCCccHHHHHHHH------HhCccceEeeccCCC-CCHHH-------HHHHHhcCcccCeeeccCCC-C
Confidence 899999997654 2222111111 247889999998874 33211 11124578899999999987 4
Q ss_pred cc--cCCCCCCCCCcCeEEEecCc
Q 007330 552 KA--LPGYLLEITALEKLEILCCP 573 (607)
Q Consensus 552 ~~--lp~~~~~l~~L~~L~l~~c~ 573 (607)
+. ++.....+++|+.|++++|+
T Consensus 501 ~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 501 SERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp BHHHHHHHHHHCSSCCEEEEESCB
T ss_pred cHHHHHHHHHhcCccCeeECcCCc
Confidence 42 44445567889999999987
No 67
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.78 E-value=4.8e-18 Score=165.95 Aligned_cols=218 Identities=17% Similarity=0.099 Sum_probs=129.4
Q ss_pred eEEEecCcccccccccccccccccCcccccEEecCCCCcccCch-hhhcCCcccEeecCCCCCcccc-ccccccccCccc
Q 007330 242 RALKITGKVSWGQNSIYAIPKEKEKLVHLRYLKLSLLMREELPD-IVCELFNLQTLEVEHCPRLKRL-PQGIGKLVNLRH 319 (607)
Q Consensus 242 ~~L~L~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~ 319 (607)
++++.+ +..++.+|..+ .++|++|++++|.+..+|. .+.++++|++|++++|. +..+ |..+..+++|++
T Consensus 14 ~~~~c~------~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~ 84 (285)
T 1ozn_A 14 VTTSCP------QQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQ 84 (285)
T ss_dssp CEEECC------SSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCE
T ss_pred eEEEcC------cCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc-cceeCHhhcCCccCCCE
Confidence 566776 67777777544 4688888888888887764 47888888888888876 5555 667788888888
Q ss_pred ccccccc-cccC-cCCCCCCCCCCccCcEEecCCccCCCcccccccccccccCceEEEeccCCCCCHhHHHHHHhcCCCC
Q 007330 320 LIYYYSN-LDYM-PKGFERLTCLRTLTEFVVSGGKYSGKACNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAELEKKRN 397 (607)
Q Consensus 320 L~~~~~~-l~~l-p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~ 397 (607)
|+++.|. +..+ |..+..+++|+.|. ++++.+...
T Consensus 85 L~l~~n~~l~~~~~~~~~~l~~L~~L~---l~~n~l~~~----------------------------------------- 120 (285)
T 1ozn_A 85 LDLSDNAQLRSVDPATFHGLGRLHTLH---LDRCGLQEL----------------------------------------- 120 (285)
T ss_dssp EECCSCTTCCCCCTTTTTTCTTCCEEE---CTTSCCCCC-----------------------------------------
T ss_pred EeCCCCCCccccCHHHhcCCcCCCEEE---CCCCcCCEE-----------------------------------------
Confidence 8877775 6555 33444444444443 333321100
Q ss_pred CcceEEEecCCCCCchhcHHHHhhcCCCCCCcceEEEeecCCCCCCChhhhcCCCccEEEEecCCCCCcCC-CCCCCCCC
Q 007330 398 VVDLGLWFDKDEEGEEADHEEIIEALKPHSNLVALDILGFKGKITFPKWIMSLNNLKSLHLRSCEKCEILS-PLGKLPSL 476 (607)
Q Consensus 398 L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~-~l~~l~~L 476 (607)
.+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.....++ .+..+++|
T Consensus 121 ---------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 179 (285)
T 1ozn_A 121 ---------------------GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL 179 (285)
T ss_dssp ---------------------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred ---------------------CHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCcccc
Confidence 01223445666777777776665223345566777777777764443333 25666777
Q ss_pred CeeEecCCcCeeeCccccCCCCCCccCCCccceeeeccccccccccccccccCcccccccCCccceeeeeccc
Q 007330 477 ETLYIAGMSGKRVGDEFFGIGSDCNIAFPKLKFLRVVDMFEWEEWGFGITRSNVKEDVMVMPCLNYLDIQFCF 549 (607)
Q Consensus 477 ~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 549 (607)
++|++++|.+..+....+ ..+++|+.|+++++ .+..++.. .+..+++|+.|++++++
T Consensus 180 ~~L~l~~n~l~~~~~~~~-------~~l~~L~~L~l~~n-~l~~~~~~--------~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 180 DRLLLHQNRVAHVHPHAF-------RDLGRLMTLYLFAN-NLSALPTE--------ALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CEEECCSSCCCEECTTTT-------TTCTTCCEEECCSS-CCSCCCHH--------HHTTCTTCCEEECCSSC
T ss_pred CEEECCCCcccccCHhHc-------cCcccccEeeCCCC-cCCcCCHH--------HcccCcccCEEeccCCC
Confidence 777777766555433322 24556666666655 33333211 13455666666666543
No 68
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.77 E-value=2.3e-21 Score=203.55 Aligned_cols=368 Identities=15% Similarity=0.101 Sum_probs=229.3
Q ss_pred CCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccc-----cccccccCcccccEEecCCCCcccC-ch
Q 007330 212 AKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIY-----AIPKEKEKLVHLRYLKLSLLMREEL-PD 285 (607)
Q Consensus 212 ~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~-----~lp~~~~~l~~L~~L~L~~~~i~~l-p~ 285 (607)
.+++++|+++++.. ....+...+..+++|++|+++ ++.+. .+|..+..+++|++|++++|.+... +.
T Consensus 2 ~~~l~~L~Ls~~~l-~~~~~~~~~~~~~~L~~L~L~------~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 74 (461)
T 1z7x_W 2 SLDIQSLDIQCEEL-SDARWAELLPLLQQCQVVRLD------DCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVH 74 (461)
T ss_dssp CEEEEEEEEESCCC-CHHHHHHHHHHHTTCSEEEEE------SSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHH
T ss_pred Cccceehhhhhccc-CchhHHHHHhhcCCccEEEcc------CCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHH
Confidence 36789999998862 222345558889999999999 55554 5677888899999999999997653 22
Q ss_pred hh-hcCC----cccEeecCCCCCcc-----ccccccccccCcccccccccccccC-----cCC-CCCCCCCCccCcEEec
Q 007330 286 IV-CELF----NLQTLEVEHCPRLK-----RLPQGIGKLVNLRHLIYYYSNLDYM-----PKG-FERLTCLRTLTEFVVS 349 (607)
Q Consensus 286 ~i-~~L~----~L~~L~L~~~~~l~-----~lp~~i~~l~~L~~L~~~~~~l~~l-----p~~-i~~l~~L~~L~~~~~~ 349 (607)
.+ ..+. +|++|++++|. +. .+|..+..+++|++|+++.|.+... ... ....++|+.|. ++
T Consensus 75 ~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~---L~ 150 (461)
T 1z7x_W 75 CVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQ---LE 150 (461)
T ss_dssp HHHHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE---CT
T ss_pred HHHHHHhhCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEE---CC
Confidence 33 3455 79999999998 55 5688899999999999999887532 112 12244555555 77
Q ss_pred CCccCCCcc--cccccccccccCceEEEeccCCCCCH-hHHHHHHhc-CCCCCcceEEEecCCCCCchhcHHHHhhcCCC
Q 007330 350 GGKYSGKAC--NIEGLRHLNHLGGVFRITGLGNVTDV-DEAENAELE-KKRNVVDLGLWFDKDEEGEEADHEEIIEALKP 425 (607)
Q Consensus 350 ~~~~~~~~~--~~~~l~~L~~L~~~l~i~~~~~~~~~-~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~ 425 (607)
++.+..... ....+..++.|+ .+.+.+.. +... .......+. ..++|+.|++++|..... ....++..+..
T Consensus 151 ~n~l~~~~~~~l~~~l~~~~~L~-~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~---~~~~l~~~l~~ 225 (461)
T 1z7x_W 151 YCSLSAASCEPLASVLRAKPDFK-ELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSD---NCRDLCGIVAS 225 (461)
T ss_dssp TSCCBGGGHHHHHHHHHHCTTCC-EEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTT---HHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhhCCCCC-EEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCcHH---HHHHHHHHHHh
Confidence 776543221 112223334444 66666543 1111 111112222 467999999998875321 12345666677
Q ss_pred CCCcceEEEeecCCCCCC-----ChhhhcCCCccEEEEecCCCCC-----cCCCCCCCCCCCeeEecCCcCeeeCccccC
Q 007330 426 HSNLVALDILGFKGKITF-----PKWIMSLNNLKSLHLRSCEKCE-----ILSPLGKLPSLETLYIAGMSGKRVGDEFFG 495 (607)
Q Consensus 426 ~~~L~~L~l~~~~~~~~l-----p~~l~~l~~L~~L~L~~~~~~~-----~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~ 495 (607)
+++|++|++++|.+...- +.....+++|++|++++|.... ....+..+++|++|++++|.+...+...+.
T Consensus 226 ~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 305 (461)
T 1z7x_W 226 KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLC 305 (461)
T ss_dssp CTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHH
T ss_pred CCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHH
Confidence 899999999998765411 1222258899999999996443 233456689999999999986543322221
Q ss_pred CCCCCccCCCccceeeeccccccccccccccccCcccccccCCccceeeeecccCcccc-C----CCCCC-CCCcCeEEE
Q 007330 496 IGSDCNIAFPKLKFLRVVDMFEWEEWGFGITRSNVKEDVMVMPCLNYLDIQFCFKLKAL-P----GYLLE-ITALEKLEI 569 (607)
Q Consensus 496 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-p----~~~~~-l~~L~~L~l 569 (607)
..- ....++|++|++++|. +...... ..+..+..+++|++|++++| .+... + ..+.. .++|++|++
T Consensus 306 ~~l--~~~~~~L~~L~L~~n~-l~~~~~~----~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L 377 (461)
T 1z7x_W 306 ETL--LEPGCQLESLWVKSCS-FTAACCS----HFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWL 377 (461)
T ss_dssp HHH--TSTTCCCCEEECTTSC-CBGGGHH----HHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred HHh--ccCCccceeeEcCCCC-CchHHHH----HHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEEC
Confidence 100 0134699999999984 3322100 12223567899999999997 45442 1 22222 679999999
Q ss_pred ecCcchhHhhhcCCCCCCCcccccCeeEeCceEee
Q 007330 570 LCCPILEQRYRKGTGEDWAKVAHVPTITINRQYVQ 604 (607)
Q Consensus 570 ~~c~~l~~~~~~~~~~~~~~~~~ip~~~~~~~~~~ 604 (607)
++|.--...+. ..........++..+.+.+|.+.
T Consensus 378 ~~n~i~~~~~~-~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 378 ADCDVSDSSCS-SLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp TTSCCCHHHHH-HHHHHHHHCCCCCEEECCSSSCC
T ss_pred CCCCCChhhHH-HHHHHHHhCCCccEEECCCCCCC
Confidence 99953211000 00011223455666777776654
No 69
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.77 E-value=1.5e-19 Score=196.17 Aligned_cols=366 Identities=14% Similarity=0.052 Sum_probs=195.2
Q ss_pred cCceeEEEEEeCCCCCc-ccccc-CCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccccccccccC
Q 007330 189 LEKFRHSMLVLGRRASF-PVSIF-KAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIPKEKEK 266 (607)
Q Consensus 189 ~~~~r~l~l~~~~~~~~-~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp~~~~~ 266 (607)
...++++.+.++.+... +..+. .+++|++|++.+|.......++..+..+++|++|++++|. +++.....++.....
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDT 182 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTT
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhc
Confidence 45688899988766432 22333 5899999999988533444466667789999999999553 222222334444457
Q ss_pred cccccEEecCCCC--c--ccCchhhhcCCcccEeecCCCCCccccccccccccCccccccccc-------ccccCcCCCC
Q 007330 267 LVHLRYLKLSLLM--R--EELPDIVCELFNLQTLEVEHCPRLKRLPQGIGKLVNLRHLIYYYS-------NLDYMPKGFE 335 (607)
Q Consensus 267 l~~L~~L~L~~~~--i--~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~-------~l~~lp~~i~ 335 (607)
+++|++|++++|. + ..++..+.++++|++|++++|..+..+|..+..+++|++|+++.+ .+..++..+.
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~ 262 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALS 262 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHH
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHh
Confidence 7899999999986 2 223333467899999999999767788888888999999984332 2223333334
Q ss_pred CCCCCCcc---------------------CcEEecCCccCCCcccccccccccccCceEEEeccCCCCCHhHHHHHHhcC
Q 007330 336 RLTCLRTL---------------------TEFVVSGGKYSGKACNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAELEK 394 (607)
Q Consensus 336 ~l~~L~~L---------------------~~~~~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~ 394 (607)
++++|+.| ..++++.+.+.... ...-+..++.|+ .+.+.++ ............
T Consensus 263 ~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~-l~~~~~~~~~L~-~L~l~~~----~~~~~l~~l~~~ 336 (594)
T 2p1m_B 263 GCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYD-LVKLLCQCPKLQ-RLWVLDY----IEDAGLEVLAST 336 (594)
T ss_dssp TCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHH-HHHHHTTCTTCC-EEEEEGG----GHHHHHHHHHHH
T ss_pred cCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHH-HHHHHhcCCCcC-EEeCcCc----cCHHHHHHHHHh
Confidence 44444443 11123333211000 000011222222 4444432 011112222223
Q ss_pred CCCCcceEEEecCCC---CCchhcHHHHhhcCCCCCCcceEEEeecCCCCCCChhhh-cCCCccEEEEe-----cCCCCC
Q 007330 395 KRNVVDLGLWFDKDE---EGEEADHEEIIEALKPHSNLVALDILGFKGKITFPKWIM-SLNNLKSLHLR-----SCEKCE 465 (607)
Q Consensus 395 ~~~L~~L~l~~~~~~---~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~l~-~l~~L~~L~L~-----~~~~~~ 465 (607)
+++|++|++..+... .........+......+++|+.|.+.++......+..+. .+++|+.|+++ +|...+
T Consensus 337 ~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~ 416 (594)
T 2p1m_B 337 CKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT 416 (594)
T ss_dssp CTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT
T ss_pred CCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc
Confidence 555555555332100 000000111111111245666665554444332222232 46677777777 233333
Q ss_pred cCCC-------CCCCCCCCeeEecCCcCeeeCccccCCCCCCccCCCccceeeeccccccccccccccccCcccccccCC
Q 007330 466 ILSP-------LGKLPSLETLYIAGMSGKRVGDEFFGIGSDCNIAFPKLKFLRVVDMFEWEEWGFGITRSNVKEDVMVMP 538 (607)
Q Consensus 466 ~~~~-------l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~ 538 (607)
..+. +..+++|+.|++++ .+...+...+. ..+++|+.|++++|. +..... ......++
T Consensus 417 ~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~------~~~~~L~~L~L~~~~-i~~~~~-------~~l~~~~~ 481 (594)
T 2p1m_B 417 LEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIG------TYAKKMEMLSVAFAG-DSDLGM-------HHVLSGCD 481 (594)
T ss_dssp CCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHH------HHCTTCCEEEEESCC-SSHHHH-------HHHHHHCT
T ss_pred CCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHH------HhchhccEeeccCCC-CcHHHH-------HHHHhcCC
Confidence 2211 34566777777755 22211111111 136778888888774 221111 00124689
Q ss_pred ccceeeeecccCccc-cCCCCCCCCCcCeEEEecCcchh
Q 007330 539 CLNYLDIQFCFKLKA-LPGYLLEITALEKLEILCCPILE 576 (607)
Q Consensus 539 ~L~~L~l~~c~~l~~-lp~~~~~l~~L~~L~l~~c~~l~ 576 (607)
+|++|++++|+.-.. ++..+..+++|+.|++++|+...
T Consensus 482 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 482 SLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF 520 (594)
T ss_dssp TCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred CcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence 999999999875222 22345568899999999998733
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.76 E-value=1.7e-18 Score=181.78 Aligned_cols=236 Identities=14% Similarity=0.051 Sum_probs=164.4
Q ss_pred CcccccEEecCCCCcccCc-hhhhcCCcccEeecCCCCCccccccccccccCcccccccccccccCcCCCCCCCCCCccC
Q 007330 266 KLVHLRYLKLSLLMREELP-DIVCELFNLQTLEVEHCPRLKRLPQGIGKLVNLRHLIYYYSNLDYMPKGFERLTCLRTLT 344 (607)
Q Consensus 266 ~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~l~~lp~~i~~l~~L~~L~ 344 (607)
.+++|++|+|++|.+..+| ..++++++|++|+|++|. +..+++ ++.+++|++|+++.|.+..+|.. ++|+.|.
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNYVQELLVG----PSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE-CTTCTTCCEEECCSSEEEEEEEC----TTCCEEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc-cccCCCCCEEEecCCcCCCCCCC----CCcCEEE
Confidence 3448999999999998886 579999999999999998 766654 99999999999999999887753 4555554
Q ss_pred cEEecCCccCCCcccccccccccccCceEEEeccCCCCCHhHHHHHHhcCCCCCcceEEEecCCCCCchhcHHHHhhcCC
Q 007330 345 EFVVSGGKYSGKACNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAELEKKRNVVDLGLWFDKDEEGEEADHEEIIEALK 424 (607)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~ 424 (607)
++++.+.+.+. ..+++|+.|+++.|.... ..+..+.
T Consensus 106 ---L~~N~l~~~~~----------------------------------~~l~~L~~L~L~~N~l~~-------~~~~~~~ 141 (487)
T 3oja_A 106 ---AANNNISRVSC----------------------------------SRGQGKKNIYLANNKITM-------LRDLDEG 141 (487)
T ss_dssp ---CCSSCCCCEEE----------------------------------CCCSSCEEEECCSSCCCS-------GGGBCGG
T ss_pred ---CcCCcCCCCCc----------------------------------cccCCCCEEECCCCCCCC-------CCchhhc
Confidence 66665332211 012456666776665421 2234555
Q ss_pred CCCCcceEEEeecCCCCCCChhhh-cCCCccEEEEecCCCCCcCCCCCCCCCCCeeEecCCcCeeeCccccCCCCCCccC
Q 007330 425 PHSNLVALDILGFKGKITFPKWIM-SLNNLKSLHLRSCEKCEILSPLGKLPSLETLYIAGMSGKRVGDEFFGIGSDCNIA 503 (607)
Q Consensus 425 ~~~~L~~L~l~~~~~~~~lp~~l~-~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~ 503 (607)
.+++|+.|++++|.+.+..|..+. .+++|+.|+|++|... .++....+++|++|+|++|.++.++..+ ..
T Consensus 142 ~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--------~~ 212 (487)
T 3oja_A 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAKLKTLDLSSNKLAFMGPEF--------QS 212 (487)
T ss_dssp GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC-EEECCCCCTTCCEEECCSSCCCEECGGG--------GG
T ss_pred CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc-cccccccCCCCCEEECCCCCCCCCCHhH--------cC
Confidence 677888888888877765566665 6788888888888533 3455556888888888888877776553 26
Q ss_pred CCccceeeeccccccccccccccccCcccccccCCccceeeeecccCc-cccCCCCCCCCCcCeEEEe
Q 007330 504 FPKLKFLRVVDMFEWEEWGFGITRSNVKEDVMVMPCLNYLDIQFCFKL-KALPGYLLEITALEKLEIL 570 (607)
Q Consensus 504 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l-~~lp~~~~~l~~L~~L~l~ 570 (607)
+++|+.|+++++ .+..++.. +..+++|+.|++++|+.. ..+|..+..++.|+.+++.
T Consensus 213 l~~L~~L~Ls~N-~l~~lp~~---------l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 213 AAGVTWISLRNN-KLVLIEKA---------LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp GTTCSEEECTTS-CCCEECTT---------CCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCccEEEecCC-cCcccchh---------hccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 778888888876 44444443 667788888888876544 2555555666666666654
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.75 E-value=1.1e-19 Score=179.96 Aligned_cols=77 Identities=17% Similarity=0.126 Sum_probs=36.8
Q ss_pred CcccccEEecCCCCcc-cCchhh--hcCCcccEeecCCCCCccccccccccc-----cCcccccccccccccCc-CCCCC
Q 007330 266 KLVHLRYLKLSLLMRE-ELPDIV--CELFNLQTLEVEHCPRLKRLPQGIGKL-----VNLRHLIYYYSNLDYMP-KGFER 336 (607)
Q Consensus 266 ~l~~L~~L~L~~~~i~-~lp~~i--~~L~~L~~L~L~~~~~l~~lp~~i~~l-----~~L~~L~~~~~~l~~lp-~~i~~ 336 (607)
.+++|++|++++|.+. .+|..+ +.+++|++|++++|. +..+|..++.+ ++|++|+++.|.+..++ ..++.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 3455555555555543 344443 455555555555544 44444444444 45555555555554444 33444
Q ss_pred CCCCCcc
Q 007330 337 LTCLRTL 343 (607)
Q Consensus 337 l~~L~~L 343 (607)
+++|+.|
T Consensus 172 l~~L~~L 178 (312)
T 1wwl_A 172 FPALSTL 178 (312)
T ss_dssp CSSCCEE
T ss_pred CCCCCEE
Confidence 4444433
No 72
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.74 E-value=2.6e-17 Score=156.20 Aligned_cols=206 Identities=20% Similarity=0.145 Sum_probs=132.6
Q ss_pred cccccccccCcccccEEecCCCCcccCch-hhhcCCcccEeecCCCCCcccccc-ccccccCcccccccc-cccccCcCC
Q 007330 257 IYAIPKEKEKLVHLRYLKLSLLMREELPD-IVCELFNLQTLEVEHCPRLKRLPQ-GIGKLVNLRHLIYYY-SNLDYMPKG 333 (607)
Q Consensus 257 l~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~~~~-~~l~~lp~~ 333 (607)
++.+|. +. .+|++|++++|.++.+|+ .++++++|++|++++|..++.+|. .+..+++|++|+++. |.+..+|..
T Consensus 23 l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 23 IQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp CSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred ccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 666776 43 378888888888888876 577888888888888765766665 567778888888665 666555421
Q ss_pred CCCCCCCCccCcEEecCCccCCCcccccccccccccCceEEEeccCCCCCHhHHHHHHhcCCCCCcceEEEecCCCCCch
Q 007330 334 FERLTCLRTLTEFVVSGGKYSGKACNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAELEKKRNVVDLGLWFDKDEEGEE 413 (607)
Q Consensus 334 i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 413 (607)
.
T Consensus 100 ~------------------------------------------------------------------------------- 100 (239)
T 2xwt_C 100 A------------------------------------------------------------------------------- 100 (239)
T ss_dssp S-------------------------------------------------------------------------------
T ss_pred H-------------------------------------------------------------------------------
Confidence 0
Q ss_pred hcHHHHhhcCCCCCCcceEEEeecCCCCCCChhhhcCCCcc---EEEEecC-CCCCcCC-CCCCCCCCC-eeEecCCcCe
Q 007330 414 ADHEEIIEALKPHSNLVALDILGFKGKITFPKWIMSLNNLK---SLHLRSC-EKCEILS-PLGKLPSLE-TLYIAGMSGK 487 (607)
Q Consensus 414 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~l~~l~~L~---~L~L~~~-~~~~~~~-~l~~l~~L~-~L~L~~~~~~ 487 (607)
+..+++|+.|++++|.+.. +|. +..+++|+ .|++++| ......+ .+..+++|+ +|++++|.++
T Consensus 101 ---------f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 101 ---------LKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp ---------EECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred ---------hCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence 1122344555555555554 554 45555555 7777777 3333222 266777777 7777777766
Q ss_pred eeCccccCCCCCCccCCCccceeeeccccccccccccccccCcccccccC-CccceeeeecccCccccCCCCCCCCCcCe
Q 007330 488 RVGDEFFGIGSDCNIAFPKLKFLRVVDMFEWEEWGFGITRSNVKEDVMVM-PCLNYLDIQFCFKLKALPGYLLEITALEK 566 (607)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~c~~l~~lp~~~~~l~~L~~ 566 (607)
.++...+. . ++|+.|+++++..++.++.. .+..+ ++|+.|+++++ .++.+|.. .+++|+.
T Consensus 170 ~i~~~~~~-------~-~~L~~L~L~~n~~l~~i~~~--------~~~~l~~~L~~L~l~~N-~l~~l~~~--~~~~L~~ 230 (239)
T 2xwt_C 170 SVQGYAFN-------G-TKLDAVYLNKNKYLTVIDKD--------AFGGVYSGPSLLDVSQT-SVTALPSK--GLEHLKE 230 (239)
T ss_dssp EECTTTTT-------T-CEEEEEECTTCTTCCEECTT--------TTTTCSBCCSEEECTTC-CCCCCCCT--TCTTCSE
T ss_pred ccCHhhcC-------C-CCCCEEEcCCCCCcccCCHH--------HhhccccCCcEEECCCC-ccccCChh--HhccCce
Confidence 77665442 2 57788888776556655432 24466 78888888874 57777755 5778888
Q ss_pred EEEecCcc
Q 007330 567 LEILCCPI 574 (607)
Q Consensus 567 L~l~~c~~ 574 (607)
|++.++..
T Consensus 231 L~l~~~~~ 238 (239)
T 2xwt_C 231 LIARNTWT 238 (239)
T ss_dssp EECTTC--
T ss_pred eeccCccC
Confidence 88877754
No 73
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.72 E-value=1.5e-17 Score=163.95 Aligned_cols=66 Identities=23% Similarity=0.207 Sum_probs=47.9
Q ss_pred CCCCCCcceEEEeecCCCCCCChhhhcCCCccEEEEecCCCCCcCCCCCCCCCCCeeEecCCcCeeeCc
Q 007330 423 LKPHSNLVALDILGFKGKITFPKWIMSLNNLKSLHLRSCEKCEILSPLGKLPSLETLYIAGMSGKRVGD 491 (607)
Q Consensus 423 l~~~~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~ 491 (607)
+..+++|+.|++++|.+.. ++. +..+++|+.|++++|.... ++.+..+++|+.|++++|+++..+.
T Consensus 169 l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~L~~N~l~~-~~~l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 169 LANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISD-VSPLANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCB-CGGGTTCTTCCEEEEEEEEEECCCE
T ss_pred hcCCCCCCEEECCCCccCc-Chh-hcCCCCCCEEEccCCccCc-cccccCCCCCCEEEccCCeeecCCe
Confidence 4566778888888887776 554 6778888888888885443 3357788888888888887655443
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.72 E-value=9.6e-17 Score=156.60 Aligned_cols=98 Identities=18% Similarity=0.204 Sum_probs=47.8
Q ss_pred ccCCceeEEEecCcccccccccccccccccCcccccEEecCCCCcccCc-hhhhcCCcccEeecCCCCCccccccccccc
Q 007330 236 DYLTCLRALKITGKVSWGQNSIYAIPKEKEKLVHLRYLKLSLLMREELP-DIVCELFNLQTLEVEHCPRLKRLPQGIGKL 314 (607)
Q Consensus 236 ~~l~~L~~L~L~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l 314 (607)
..+++++.++++ ++.++.+|..+. +++++|++++|.+..++ ..+.++++|++|++++|. +..+|.. +.+
T Consensus 7 ~~l~~l~~l~~~------~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~l 76 (290)
T 1p9a_G 7 SKVASHLEVNCD------KRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GTL 76 (290)
T ss_dssp ECSTTCCEEECT------TSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-SCC
T ss_pred cccCCccEEECC------CCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCC-CCC
Confidence 344455555555 444555554432 45555555555554442 235555555555555554 4444432 455
Q ss_pred cCcccccccccccccCcCCCCCCCCCCcc
Q 007330 315 VNLRHLIYYYSNLDYMPKGFERLTCLRTL 343 (607)
Q Consensus 315 ~~L~~L~~~~~~l~~lp~~i~~l~~L~~L 343 (607)
++|++|+++.|.+..+|..+..+++|+.|
T Consensus 77 ~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L 105 (290)
T 1p9a_G 77 PVLGTLDLSHNQLQSLPLLGQTLPALTVL 105 (290)
T ss_dssp TTCCEEECCSSCCSSCCCCTTTCTTCCEE
T ss_pred CcCCEEECCCCcCCcCchhhccCCCCCEE
Confidence 55555555555555555444444443333
No 75
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.71 E-value=6.3e-19 Score=174.46 Aligned_cols=245 Identities=15% Similarity=0.085 Sum_probs=175.5
Q ss_pred hccCCceeEEEecCcccccccccccccccccCcccccEEecCCCCccc--Cchhhh-------cCCcccEeecCCCCCcc
Q 007330 235 FDYLTCLRALKITGKVSWGQNSIYAIPKEKEKLVHLRYLKLSLLMREE--LPDIVC-------ELFNLQTLEVEHCPRLK 305 (607)
Q Consensus 235 ~~~l~~L~~L~L~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~--lp~~i~-------~L~~L~~L~L~~~~~l~ 305 (607)
+...++|+.|+++ ++.+ .+|..+... |++|++++|.+.. +|..+. ++++|++|++++|....
T Consensus 39 ~~~~~~L~~l~l~------~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 109 (312)
T 1wwl_A 39 YGGGRSLEYLLKR------VDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTG 109 (312)
T ss_dssp EEEEEECTTHHHH------CCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBS
T ss_pred EccCCCceeEeec------cccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccc
Confidence 4556678888888 6777 778766654 9999999988744 676665 79999999999998444
Q ss_pred cccccc--ccccCcccccccccccccCcCCCCCC-----CCCCccCcEEecCCccCCCcccccccccccccCceEEEecc
Q 007330 306 RLPQGI--GKLVNLRHLIYYYSNLDYMPKGFERL-----TCLRTLTEFVVSGGKYSGKACNIEGLRHLNHLGGVFRITGL 378 (607)
Q Consensus 306 ~lp~~i--~~l~~L~~L~~~~~~l~~lp~~i~~l-----~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~~ 378 (607)
.+|..+ +.+++|++|+++.|.+..+|..++.+ ++|+.|. ++++.+.+...
T Consensus 110 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~---L~~N~l~~~~~-------------------- 166 (312)
T 1wwl_A 110 TAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLS---IAQAHSLNFSC-------------------- 166 (312)
T ss_dssp CCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEE---EESCSCCCCCT--------------------
T ss_pred hhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEE---eeCCCCccchH--------------------
Confidence 788876 89999999999999998887666555 5555554 77766433221
Q ss_pred CCCCCHhHHHHHHhcCCCCCcceEEEecCCCCCchhcHHHHhhcC--CCCCCcceEEEeecCCCCCCC---hh-hhcCCC
Q 007330 379 GNVTDVDEAENAELEKKRNVVDLGLWFDKDEEGEEADHEEIIEAL--KPHSNLVALDILGFKGKITFP---KW-IMSLNN 452 (607)
Q Consensus 379 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~lp---~~-l~~l~~ 452 (607)
..+..+++|+.|++++|...+ ....+..+ ..+++|+.|++++|.+.. ++ .. +..+++
T Consensus 167 -----------~~~~~l~~L~~L~Ls~N~l~~-----~~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~~~~l~~ 229 (312)
T 1wwl_A 167 -----------EQVRVFPALSTLDLSDNPELG-----ERGLISALCPLKFPTLQVLALRNAGMET-PSGVCSALAAARVQ 229 (312)
T ss_dssp -----------TTCCCCSSCCEEECCSCTTCH-----HHHHHHHSCTTSCTTCCEEECTTSCCCC-HHHHHHHHHHTTCC
T ss_pred -----------HHhccCCCCCEEECCCCCcCc-----chHHHHHHHhccCCCCCEEECCCCcCcc-hHHHHHHHHhcCCC
Confidence 123345567777777665311 11234444 778899999999988774 33 22 237789
Q ss_pred ccEEEEecCCCCCcC--CCCCCCCCCCeeEecCCcCeeeCccccCCCCCCccCCCccceeeeccccccccccccccccCc
Q 007330 453 LKSLHLRSCEKCEIL--SPLGKLPSLETLYIAGMSGKRVGDEFFGIGSDCNIAFPKLKFLRVVDMFEWEEWGFGITRSNV 530 (607)
Q Consensus 453 L~~L~L~~~~~~~~~--~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 530 (607)
|+.|++++|...... +.+..+++|++|++++|.++.+|..+ +++|++|+++++ .++.++.
T Consensus 230 L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~----------~~~L~~L~Ls~N-~l~~~p~------- 291 (312)
T 1wwl_A 230 LQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL----------PAKLSVLDLSYN-RLDRNPS------- 291 (312)
T ss_dssp CSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSC----------CSEEEEEECCSS-CCCSCCC-------
T ss_pred CCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhc----------cCCceEEECCCC-CCCCChh-------
Confidence 999999999755544 44667899999999999877666532 278999999987 5665532
Q ss_pred ccccccCCccceeeeeccc
Q 007330 531 KEDVMVMPCLNYLDIQFCF 549 (607)
Q Consensus 531 ~~~~~~~~~L~~L~l~~c~ 549 (607)
+..+++|++|++++++
T Consensus 292 ---~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 292 ---PDELPQVGNLSLKGNP 307 (312)
T ss_dssp ---TTTSCEEEEEECTTCT
T ss_pred ---HhhCCCCCEEeccCCC
Confidence 4588999999999864
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.71 E-value=1.7e-16 Score=153.46 Aligned_cols=194 Identities=25% Similarity=0.317 Sum_probs=111.8
Q ss_pred ceeEEEecCcccccccccccccccccCcccccEEecCCCCcccCch-hhhcCCcccEeecCCCCCcccccccc-ccccCc
Q 007330 240 CLRALKITGKVSWGQNSIYAIPKEKEKLVHLRYLKLSLLMREELPD-IVCELFNLQTLEVEHCPRLKRLPQGI-GKLVNL 317 (607)
Q Consensus 240 ~L~~L~L~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i-~~l~~L 317 (607)
..+.++++ ++.++.+|..+. .+|++|++++|.+..+|. .+.++++|++|++++|. +..+|..+ ..+++|
T Consensus 17 ~~~~l~~~------~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L 87 (270)
T 2o6q_A 17 NKNSVDCS------SKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNL 87 (270)
T ss_dssp TTTEEECT------TSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTC
T ss_pred CCCEEEcc------CCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCC
Confidence 45667777 666777776553 567777777777777765 46777777777777766 66666554 667777
Q ss_pred ccccccccccccCcCC-CCCCCCCCccCcEEecCCccCCCcccccccccccccCceEEEeccCCCCCHhHHHHHHhcCCC
Q 007330 318 RHLIYYYSNLDYMPKG-FERLTCLRTLTEFVVSGGKYSGKACNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAELEKKR 396 (607)
Q Consensus 318 ~~L~~~~~~l~~lp~~-i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~ 396 (607)
++|+++.|.+..+|.. +..+++|+.|. ++++.+....
T Consensus 88 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~---l~~n~l~~~~--------------------------------------- 125 (270)
T 2o6q_A 88 ETLWVTDNKLQALPIGVFDQLVNLAELR---LDRNQLKSLP--------------------------------------- 125 (270)
T ss_dssp CEEECCSSCCCCCCTTTTTTCSSCCEEE---CCSSCCCCCC---------------------------------------
T ss_pred CEEECCCCcCCcCCHhHcccccCCCEEE---CCCCccCeeC---------------------------------------
Confidence 7777777777666543 34444444443 4443311110
Q ss_pred CCcceEEEecCCCCCchhcHHHHhhcCCCCCCcceEEEeecCCCCCCCh-hhhcCCCccEEEEecCCCCCcCC-CCCCCC
Q 007330 397 NVVDLGLWFDKDEEGEEADHEEIIEALKPHSNLVALDILGFKGKITFPK-WIMSLNNLKSLHLRSCEKCEILS-PLGKLP 474 (607)
Q Consensus 397 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~L~~~~~~~~~~-~l~~l~ 474 (607)
+..+..+++|+.|++++|.+.. +|. .+..+++|+.|++++|......+ .+..++
T Consensus 126 -----------------------~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 181 (270)
T 2o6q_A 126 -----------------------PRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLT 181 (270)
T ss_dssp -----------------------TTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred -----------------------HHHhCcCcCCCEEECCCCcCCc-cCHhHccCCcccceeEecCCcCcEeChhHhccCC
Confidence 0122344555555665555554 333 24556666666666664333332 255566
Q ss_pred CCCeeEecCCcCeeeCccccCCCCCCccCCCccceeeeccc
Q 007330 475 SLETLYIAGMSGKRVGDEFFGIGSDCNIAFPKLKFLRVVDM 515 (607)
Q Consensus 475 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 515 (607)
+|++|++++|.++.++...+. .+++|+.|+++++
T Consensus 182 ~L~~L~L~~N~l~~~~~~~~~-------~l~~L~~L~l~~N 215 (270)
T 2o6q_A 182 ELKTLKLDNNQLKRVPEGAFD-------SLEKLKMLQLQEN 215 (270)
T ss_dssp TCCEEECCSSCCSCCCTTTTT-------TCTTCCEEECCSS
T ss_pred CcCEEECCCCcCCcCCHHHhc-------cccCCCEEEecCC
Confidence 666666666665555544332 4556666666654
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.71 E-value=1e-16 Score=155.21 Aligned_cols=114 Identities=18% Similarity=0.124 Sum_probs=59.3
Q ss_pred CCcceEEEeecCCCCCCChhhhcCCCccEEEEecCCCCCcCCC-CCCCCCCCeeEecCCcCeeeCccccCCCCCCccCCC
Q 007330 427 SNLVALDILGFKGKITFPKWIMSLNNLKSLHLRSCEKCEILSP-LGKLPSLETLYIAGMSGKRVGDEFFGIGSDCNIAFP 505 (607)
Q Consensus 427 ~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~ 505 (607)
++|+.|++++|.+....+..+..+++|+.|++++|.....++. ++.+++|++|++++|.++.++...+ ..++
T Consensus 133 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-------~~l~ 205 (272)
T 3rfs_A 133 TNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVF-------DRLT 205 (272)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT-------TTCT
T ss_pred CCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHH-------hCCc
Confidence 3444455555544441222334556666666666643332222 4556666666666666554444333 2456
Q ss_pred ccceeeeccccccccccccccccCcccccccCCccceeeeecccCccccCCCCCCCCC
Q 007330 506 KLKFLRVVDMFEWEEWGFGITRSNVKEDVMVMPCLNYLDIQFCFKLKALPGYLLEITA 563 (607)
Q Consensus 506 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~ 563 (607)
+|+.|++++++- .+.+|+|+.|+++.+.....+|..+..++.
T Consensus 206 ~L~~L~l~~N~~----------------~~~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 206 SLQYIWLHDNPW----------------DCTCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp TCCEEECCSSCB----------------CCCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred CCCEEEccCCCc----------------cccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 666666666521 124566666666665555566665554443
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.71 E-value=5.4e-17 Score=153.96 Aligned_cols=105 Identities=14% Similarity=0.276 Sum_probs=77.0
Q ss_pred ceeEEEecCcccccccccccccc-cccCcccccEEecCCCC-cccCch-hhhcCCcccEeecCCCCCcccccc-cccccc
Q 007330 240 CLRALKITGKVSWGQNSIYAIPK-EKEKLVHLRYLKLSLLM-REELPD-IVCELFNLQTLEVEHCPRLKRLPQ-GIGKLV 315 (607)
Q Consensus 240 ~L~~L~L~~~~~~~~~~l~~lp~-~~~~l~~L~~L~L~~~~-i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~ 315 (607)
.|++|+++ ++.++.+|. .++.+++|++|++++|. ++.+|+ .+.++++|++|++++|..++.+|. .+..++
T Consensus 32 ~l~~L~l~------~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~ 105 (239)
T 2xwt_C 32 STQTLKLI------ETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELP 105 (239)
T ss_dssp TCCEEEEE------SCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCT
T ss_pred cccEEEEe------CCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCC
Confidence 67888888 777877764 67788888888888886 888876 578888999999988333777764 567888
Q ss_pred CcccccccccccccCcCCCCCCCCCCccCcEEecCC
Q 007330 316 NLRHLIYYYSNLDYMPKGFERLTCLRTLTEFVVSGG 351 (607)
Q Consensus 316 ~L~~L~~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~ 351 (607)
+|++|+++.|.+..+|. +..+++|+.|..++++++
T Consensus 106 ~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N 140 (239)
T 2xwt_C 106 LLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDN 140 (239)
T ss_dssp TCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESC
T ss_pred CCCEEeCCCCCCccccc-cccccccccccEEECCCC
Confidence 99999988888877775 555555543333334443
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.70 E-value=1.6e-16 Score=154.96 Aligned_cols=198 Identities=19% Similarity=0.155 Sum_probs=117.4
Q ss_pred ccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccccc-cccccCcccccEEecCCCCcccCchhh
Q 007330 209 IFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAI-PKEKEKLVHLRYLKLSLLMREELPDIV 287 (607)
Q Consensus 209 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~l-p~~~~~l~~L~~L~L~~~~i~~lp~~i 287 (607)
+.++++++++++.++. ...++.. + .+.+++|+++ ++.+..+ |..+..+++|++|++++|.+..+|..
T Consensus 6 ~~~l~~l~~l~~~~~~--l~~ip~~-~--~~~l~~L~L~------~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~- 73 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRN--LTALPPD-L--PKDTTILHLS------ENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD- 73 (290)
T ss_dssp EECSTTCCEEECTTSC--CSSCCSC-C--CTTCCEEECT------TSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-
T ss_pred ccccCCccEEECCCCC--CCcCCCC-C--CCCCCEEEcC------CCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-
Confidence 3455666666666654 2222222 2 2567777777 6666555 45566777777777777777776654
Q ss_pred hcCCcccEeecCCCCCccccccccccccCcccccccccccccCcC-CCCCCCCCCccCcEEecCCccCCCcccccccccc
Q 007330 288 CELFNLQTLEVEHCPRLKRLPQGIGKLVNLRHLIYYYSNLDYMPK-GFERLTCLRTLTEFVVSGGKYSGKACNIEGLRHL 366 (607)
Q Consensus 288 ~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~l~~lp~-~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L 366 (607)
+.+++|++|++++|. +..+|..+..+++|++|+++.|.+..+|. .+..+++|+.|. ++++.+...+
T Consensus 74 ~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~---L~~N~l~~~~--------- 140 (290)
T 1p9a_G 74 GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY---LKGNELKTLP--------- 140 (290)
T ss_dssp SCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEE---CTTSCCCCCC---------
T ss_pred CCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEE---CCCCCCCccC---------
Confidence 667777777777765 66777667777777777777777766653 244454444443 4444311110
Q ss_pred cccCceEEEeccCCCCCHhHHHHHHhcCCCCCcceEEEecCCCCCchhcHHHHhhcCCCCCCcceEEEeecCCCCCCChh
Q 007330 367 NHLGGVFRITGLGNVTDVDEAENAELEKKRNVVDLGLWFDKDEEGEEADHEEIIEALKPHSNLVALDILGFKGKITFPKW 446 (607)
Q Consensus 367 ~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~ 446 (607)
+..+..+++|+.|++++|.+.. +|..
T Consensus 141 -----------------------------------------------------~~~~~~l~~L~~L~L~~N~l~~-l~~~ 166 (290)
T 1p9a_G 141 -----------------------------------------------------PGLLTPTPKLEKLSLANNNLTE-LPAG 166 (290)
T ss_dssp -----------------------------------------------------TTTTTTCTTCCEEECTTSCCSC-CCTT
T ss_pred -----------------------------------------------------hhhcccccCCCEEECCCCcCCc-cCHH
Confidence 0112344556666666666655 5443
Q ss_pred -hhcCCCccEEEEecCCCCCcCCCCCCCCCCCeeEecCCc
Q 007330 447 -IMSLNNLKSLHLRSCEKCEILSPLGKLPSLETLYIAGMS 485 (607)
Q Consensus 447 -l~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~ 485 (607)
+..+++|+.|+|++|.....+..+..+++|+.|++.+|+
T Consensus 167 ~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 167 LLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred HhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 345677777777777555555556666677777777665
No 80
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.70 E-value=6e-17 Score=157.34 Aligned_cols=123 Identities=24% Similarity=0.210 Sum_probs=78.9
Q ss_pred CCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCccccccccccccc-ccccCcccccEEecCCCCcccCc-hhhhcC
Q 007330 213 KKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIP-KEKEKLVHLRYLKLSLLMREELP-DIVCEL 290 (607)
Q Consensus 213 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L 290 (607)
+++++|++++|. .....+..+..+++|++|+++ ++.+..++ ..++.+++|++|++++|.+..++ ..+.++
T Consensus 28 ~~l~~L~ls~n~--l~~~~~~~~~~l~~L~~L~l~------~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (276)
T 2z62_A 28 FSTKNLDLSFNP--LRHLGSYSFFSFPELQVLDLS------RCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 99 (276)
T ss_dssp TTCCEEECTTCC--CCEECTTTTTTCTTCSEEECT------TCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred CCccEEECCCCc--ccccCHhHhccccCCcEEECC------CCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCC
Confidence 457777777765 333334356677777777777 66666654 35667777777777777766665 346777
Q ss_pred CcccEeecCCCCCcccccc-ccccccCccccccccccccc--CcCCCCCCCCCCccC
Q 007330 291 FNLQTLEVEHCPRLKRLPQ-GIGKLVNLRHLIYYYSNLDY--MPKGFERLTCLRTLT 344 (607)
Q Consensus 291 ~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~~~~~~l~~--lp~~i~~l~~L~~L~ 344 (607)
++|++|++++|. +..++. .++.+++|++|+++.|.+.. +|..+..+++|+.|.
T Consensus 100 ~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~ 155 (276)
T 2z62_A 100 SSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155 (276)
T ss_dssp TTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE
T ss_pred ccccEEECCCCC-ccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEE
Confidence 777777777776 555443 46777777777777776654 455555555555444
No 81
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.70 E-value=5.8e-17 Score=157.45 Aligned_cols=84 Identities=21% Similarity=0.256 Sum_probs=40.5
Q ss_pred ceeEEEecCcccccccccccccc-cccCcccccEEecCCCCcccCch-hhhcCCcccEeecCCCCCccccc-cccccccC
Q 007330 240 CLRALKITGKVSWGQNSIYAIPK-EKEKLVHLRYLKLSLLMREELPD-IVCELFNLQTLEVEHCPRLKRLP-QGIGKLVN 316 (607)
Q Consensus 240 ~L~~L~L~~~~~~~~~~l~~lp~-~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~ 316 (607)
+|++|+++ ++.++.++. .+..+++|++|++++|.+..++. .+.++++|++|++++|. +..++ ..+..+++
T Consensus 29 ~l~~L~ls------~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~ 101 (276)
T 2z62_A 29 STKNLDLS------FNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSS 101 (276)
T ss_dssp TCCEEECT------TCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTT
T ss_pred CccEEECC------CCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCcc
Confidence 45555555 444444432 44455555555555555544443 34555555555555554 33332 33445555
Q ss_pred cccccccccccccC
Q 007330 317 LRHLIYYYSNLDYM 330 (607)
Q Consensus 317 L~~L~~~~~~l~~l 330 (607)
|++|+++.|.+..+
T Consensus 102 L~~L~l~~n~l~~~ 115 (276)
T 2z62_A 102 LQKLVAVETNLASL 115 (276)
T ss_dssp CCEEECTTSCCCCS
T ss_pred ccEEECCCCCcccc
Confidence 55555444444443
No 82
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.69 E-value=1.6e-16 Score=159.88 Aligned_cols=236 Identities=15% Similarity=0.108 Sum_probs=142.2
Q ss_pred eEEEecCcccccccccccccccccCcccccEEecCCCCcccCchh-hhcCCcccEeecCCCCCccccccc-cccccCccc
Q 007330 242 RALKITGKVSWGQNSIYAIPKEKEKLVHLRYLKLSLLMREELPDI-VCELFNLQTLEVEHCPRLKRLPQG-IGKLVNLRH 319 (607)
Q Consensus 242 ~~L~L~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~ 319 (607)
++++.+ ++.++++|..+ .+++++|+|++|.|+.+|+. +.++++|++|+|++|...+.+|.. +.++++|++
T Consensus 12 ~~v~C~------~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~ 83 (350)
T 4ay9_X 12 RVFLCQ------ESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHE 83 (350)
T ss_dssp TEEEEE------STTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCE
T ss_pred CEEEec------CCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhh
Confidence 455555 66777777665 35777888888888777764 677888888888887744556543 467777766
Q ss_pred cc-ccccccccCcC-CCCCCCCCCccCcEEecCCccCCCcccccccccccccCceEEEeccCCCCCHhHHHHHHhcCCCC
Q 007330 320 LI-YYYSNLDYMPK-GFERLTCLRTLTEFVVSGGKYSGKACNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAELEKKRN 397 (607)
Q Consensus 320 L~-~~~~~l~~lp~-~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~ 397 (607)
+. .++|++..+|+ .+..+++|+.|. ++++.+...+.. ..+. ..+
T Consensus 84 ~l~~~~N~l~~l~~~~f~~l~~L~~L~---l~~n~l~~~~~~-~~~~------------------------------~~~ 129 (350)
T 4ay9_X 84 IRIEKANNLLYINPEAFQNLPNLQYLL---ISNTGIKHLPDV-HKIH------------------------------SLQ 129 (350)
T ss_dssp EEEEEETTCCEECTTSBCCCTTCCEEE---EEEECCSSCCCC-TTCC------------------------------BSS
T ss_pred hhcccCCcccccCchhhhhcccccccc---ccccccccCCch-hhcc------------------------------cch
Confidence 54 66777777754 345566665555 444442221110 0000 011
Q ss_pred CcceEEEecCCCCCchhcHHHHh-hcCCCC-CCcceEEEeecCCCCCCChhhhcCCCccEEEEecCCCCCcCCC--CCCC
Q 007330 398 VVDLGLWFDKDEEGEEADHEEII-EALKPH-SNLVALDILGFKGKITFPKWIMSLNNLKSLHLRSCEKCEILSP--LGKL 473 (607)
Q Consensus 398 L~~L~l~~~~~~~~~~~~~~~~~-~~l~~~-~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~--l~~l 473 (607)
+..|++..+... ..++ ..+... ..++.|++++|.+.. +|.......+|++|.+.++...+.++. +..+
T Consensus 130 l~~l~l~~~~~i-------~~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l 201 (350)
T 4ay9_X 130 KVLLDIQDNINI-------HTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGA 201 (350)
T ss_dssp CEEEEEESCTTC-------CEECTTSSTTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTE
T ss_pred hhhhhhcccccc-------ccccccchhhcchhhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccC
Confidence 112222111100 0000 112222 357778888887776 776666667788888876655555543 6778
Q ss_pred CCCCeeEecCCcCeeeCccccCCCCCCccCCCccceeeeccccccccccccccccCcccccccCCccceeeeec
Q 007330 474 PSLETLYIAGMSGKRVGDEFFGIGSDCNIAFPKLKFLRVVDMFEWEEWGFGITRSNVKEDVMVMPCLNYLDIQF 547 (607)
Q Consensus 474 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 547 (607)
++|++|++++|.++.+|. .+|.+|+.|.+.++.+++.++. +..+++|+.+++.+
T Consensus 202 ~~L~~LdLs~N~l~~lp~----------~~~~~L~~L~~l~~~~l~~lP~----------l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 202 SGPVILDISRTRIHSLPS----------YGLENLKKLRARSTYNLKKLPT----------LEKLVALMEASLTY 255 (350)
T ss_dssp ECCSEEECTTSCCCCCCS----------SSCTTCCEEECTTCTTCCCCCC----------TTTCCSCCEEECSC
T ss_pred cccchhhcCCCCcCccCh----------hhhccchHhhhccCCCcCcCCC----------chhCcChhhCcCCC
Confidence 888888888887777664 2566777777777777776653 45778888887765
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.68 E-value=3.1e-16 Score=154.56 Aligned_cols=190 Identities=19% Similarity=0.204 Sum_probs=118.2
Q ss_pred ccCCceeEEEecCcccccccccccccccccCcccccEEecCCCCcccCchhhhcCCcccEeecCCCCCcccccccccccc
Q 007330 236 DYLTCLRALKITGKVSWGQNSIYAIPKEKEKLVHLRYLKLSLLMREELPDIVCELFNLQTLEVEHCPRLKRLPQGIGKLV 315 (607)
Q Consensus 236 ~~l~~L~~L~L~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~ 315 (607)
..+++|++|+++ ++.+..+| .+..+++|++|++++|.+..+|. +.++++|++|++++|. +..+| .+..++
T Consensus 38 ~~l~~L~~L~l~------~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~ 107 (308)
T 1h6u_A 38 ADLDGITTLSAF------GTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQ 107 (308)
T ss_dssp HHHHTCCEEECT------TSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCT
T ss_pred HHcCCcCEEEee------CCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCC
Confidence 345667777777 55666665 46667777777777777766666 6677777777777766 66654 566677
Q ss_pred CcccccccccccccCcCCCCCCCCCCccCcEEecCCccCCCcccccccccccccCceEEEeccCCCCCHhHHHHHHhcCC
Q 007330 316 NLRHLIYYYSNLDYMPKGFERLTCLRTLTEFVVSGGKYSGKACNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAELEKK 395 (607)
Q Consensus 316 ~L~~L~~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~ 395 (607)
+|++|+++.|.+..+|. +..+++|+.|. ++++.+...
T Consensus 108 ~L~~L~l~~n~l~~~~~-l~~l~~L~~L~---l~~n~l~~~--------------------------------------- 144 (308)
T 1h6u_A 108 SIKTLDLTSTQITDVTP-LAGLSNLQVLY---LDLNQITNI--------------------------------------- 144 (308)
T ss_dssp TCCEEECTTSCCCCCGG-GTTCTTCCEEE---CCSSCCCCC---------------------------------------
T ss_pred CCCEEECCCCCCCCchh-hcCCCCCCEEE---CCCCccCcC---------------------------------------
Confidence 77777766666655543 33333333332 333321100
Q ss_pred CCCcceEEEecCCCCCchhcHHHHhhcCCCCCCcceEEEeecCCCCCCChhhhcCCCccEEEEecCCCCCcCCCCCCCCC
Q 007330 396 RNVVDLGLWFDKDEEGEEADHEEIIEALKPHSNLVALDILGFKGKITFPKWIMSLNNLKSLHLRSCEKCEILSPLGKLPS 475 (607)
Q Consensus 396 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~l~~ 475 (607)
..+..+++|+.|++++|.+.. ++. +..+++|+.|++++|... .++.+..+++
T Consensus 145 -------------------------~~l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~-~~~~l~~l~~ 196 (308)
T 1h6u_A 145 -------------------------SPLAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKIS-DISPLASLPN 196 (308)
T ss_dssp -------------------------GGGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC-CCGGGGGCTT
T ss_pred -------------------------ccccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccC-cChhhcCCCC
Confidence 013345677777777777666 554 677788888888877533 3444677778
Q ss_pred CCeeEecCCcCeeeCccccCCCCCCccCCCccceeeeccc
Q 007330 476 LETLYIAGMSGKRVGDEFFGIGSDCNIAFPKLKFLRVVDM 515 (607)
Q Consensus 476 L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 515 (607)
|++|++++|.+..++. + ..+++|+.|+++++
T Consensus 197 L~~L~L~~N~l~~~~~--l-------~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 197 LIEVHLKNNQISDVSP--L-------ANTSNLFIVTLTNQ 227 (308)
T ss_dssp CCEEECTTSCCCBCGG--G-------TTCTTCCEEEEEEE
T ss_pred CCEEEccCCccCcccc--c-------cCCCCCCEEEccCC
Confidence 8888888877665542 1 25677777777776
No 84
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.67 E-value=6.6e-16 Score=149.31 Aligned_cols=176 Identities=25% Similarity=0.276 Sum_probs=108.6
Q ss_pred CceeEEEecCcccccccccccccc-cccCcccccEEecCCCCcccCchhh-hcCCcccEeecCCCCCccccccc-ccccc
Q 007330 239 TCLRALKITGKVSWGQNSIYAIPK-EKEKLVHLRYLKLSLLMREELPDIV-CELFNLQTLEVEHCPRLKRLPQG-IGKLV 315 (607)
Q Consensus 239 ~~L~~L~L~~~~~~~~~~l~~lp~-~~~~l~~L~~L~L~~~~i~~lp~~i-~~L~~L~~L~L~~~~~l~~lp~~-i~~l~ 315 (607)
+.|++|+++ ++.+..+|. .+..+++|++|++++|.+..+|..+ .++++|++|++++|. +..+|.. +..++
T Consensus 37 ~~l~~L~l~------~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~ 109 (270)
T 2o6q_A 37 ADTKKLDLQ------SNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK-LQALPIGVFDQLV 109 (270)
T ss_dssp TTCSEEECC------SSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC-CCCCCTTTTTTCS
T ss_pred CCCCEEECc------CCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc-CCcCCHhHccccc
Confidence 456677777 566666643 5667777777777777777766553 567777777777766 5555543 46677
Q ss_pred CcccccccccccccCcCC-CCCCCCCCccCcEEecCCccCCCcccccccccccccCceEEEeccCCCCCHhHHHHHHhcC
Q 007330 316 NLRHLIYYYSNLDYMPKG-FERLTCLRTLTEFVVSGGKYSGKACNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAELEK 394 (607)
Q Consensus 316 ~L~~L~~~~~~l~~lp~~-i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~ 394 (607)
+|++|+++.|.+..+|.. +..+++|+.|. ++++.+...+
T Consensus 110 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~---Ls~n~l~~~~------------------------------------- 149 (270)
T 2o6q_A 110 NLAELRLDRNQLKSLPPRVFDSLTKLTYLS---LGYNELQSLP------------------------------------- 149 (270)
T ss_dssp SCCEEECCSSCCCCCCTTTTTTCTTCCEEE---CCSSCCCCCC-------------------------------------
T ss_pred CCCEEECCCCccCeeCHHHhCcCcCCCEEE---CCCCcCCccC-------------------------------------
Confidence 777777777777666543 34444444443 4444311100
Q ss_pred CCCCcceEEEecCCCCCchhcHHHHhhcCCCCCCcceEEEeecCCCCCCChhhhcCCCccEEEEecCCCCCcCCC-CCCC
Q 007330 395 KRNVVDLGLWFDKDEEGEEADHEEIIEALKPHSNLVALDILGFKGKITFPKWIMSLNNLKSLHLRSCEKCEILSP-LGKL 473 (607)
Q Consensus 395 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~-l~~l 473 (607)
+..+..+++|+.|++++|.+....+..+..+++|+.|+|++|.....++. +..+
T Consensus 150 -------------------------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 204 (270)
T 2o6q_A 150 -------------------------KGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSL 204 (270)
T ss_dssp -------------------------TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred -------------------------HhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccc
Confidence 01133456677777777766662233466778888888888855443332 6778
Q ss_pred CCCCeeEecCCcC
Q 007330 474 PSLETLYIAGMSG 486 (607)
Q Consensus 474 ~~L~~L~L~~~~~ 486 (607)
++|+.|++++|++
T Consensus 205 ~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 205 EKLKMLQLQENPW 217 (270)
T ss_dssp TTCCEEECCSSCB
T ss_pred cCCCEEEecCCCe
Confidence 8888888888863
No 85
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.67 E-value=5.5e-16 Score=150.02 Aligned_cols=84 Identities=17% Similarity=0.100 Sum_probs=46.8
Q ss_pred CCCCcceEEEeecCCCCCCChhhhcCCCccEEEEecCCCCCcCCC-CCCCCCCCeeEecCCcCeeeCccccCCCCCCccC
Q 007330 425 PHSNLVALDILGFKGKITFPKWIMSLNNLKSLHLRSCEKCEILSP-LGKLPSLETLYIAGMSGKRVGDEFFGIGSDCNIA 503 (607)
Q Consensus 425 ~~~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~ 503 (607)
.+++|+.|++++|.+....+..+..+++|+.|++++|.....++. ++.+++|++|++++|++. ..
T Consensus 155 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~--------------~~ 220 (272)
T 3rfs_A 155 KLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD--------------CT 220 (272)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC--------------CC
T ss_pred cCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc--------------cc
Confidence 344555566666655552233345666777777777654443333 566777777777776521 14
Q ss_pred CCccceeeecccccccccc
Q 007330 504 FPKLKFLRVVDMFEWEEWG 522 (607)
Q Consensus 504 ~~~L~~L~l~~~~~l~~~~ 522 (607)
+|+|+.|.+..+.....++
T Consensus 221 ~~~l~~l~~~~n~~~g~ip 239 (272)
T 3rfs_A 221 CPGIRYLSEWINKHSGVVR 239 (272)
T ss_dssp TTTTHHHHHHHHHTGGGBB
T ss_pred CcHHHHHHHHHHhCCCccc
Confidence 5666666666553333333
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.65 E-value=2.7e-17 Score=164.75 Aligned_cols=223 Identities=17% Similarity=0.102 Sum_probs=126.3
Q ss_pred CCeeEEEeeccchhhhhhhhhhhccC--CceeEEEecCcccccccccccccccccCcccccEEecCCCCccc--Cchhhh
Q 007330 213 KKLRSLLIHSEFEVSFHVLQGLFDYL--TCLRALKITGKVSWGQNSIYAIPKEKEKLVHLRYLKLSLLMREE--LPDIVC 288 (607)
Q Consensus 213 ~~L~~L~l~~~~~~~~~~~~~~~~~l--~~L~~L~L~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~--lp~~i~ 288 (607)
..+++++++++... +..+..+ +.+++|+++ ++.+...+..+..+++|++|++++|.+.. +|..+.
T Consensus 47 ~~~~~l~l~~~~~~-----~~~~~~~~~~~l~~L~l~------~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~ 115 (336)
T 2ast_B 47 SLWQTLDLTGKNLH-----PDVTGRLLSQGVIAFRCP------RSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILS 115 (336)
T ss_dssp TTSSEEECTTCBCC-----HHHHHHHHHTTCSEEECT------TCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHT
T ss_pred hhheeeccccccCC-----HHHHHhhhhccceEEEcC------CccccccchhhccCCCCCEEEccCCCcCHHHHHHHHh
Confidence 34677777766411 2234444 677777777 66666555556667777777777777543 666677
Q ss_pred cCCcccEeecCCCCCccccccccccccCccccccccc-ccccCcCCCCCCCCCCccCcEEecCCccCCCccccccccccc
Q 007330 289 ELFNLQTLEVEHCPRLKRLPQGIGKLVNLRHLIYYYS-NLDYMPKGFERLTCLRTLTEFVVSGGKYSGKACNIEGLRHLN 367 (607)
Q Consensus 289 ~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~-~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~ 367 (607)
++++|++|++++|......|..++.+++|++|+++.+ .+..
T Consensus 116 ~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~-------------------------------------- 157 (336)
T 2ast_B 116 QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE-------------------------------------- 157 (336)
T ss_dssp TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCH--------------------------------------
T ss_pred hCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCH--------------------------------------
Confidence 7777777777777622355666666777777775554 2321
Q ss_pred ccCceEEEeccCCCCCHhHHHHHHhcCCCCCcceEEEec-CCCCCchhcHHHHhhcCCCCC-CcceEEEeecC--CC-CC
Q 007330 368 HLGGVFRITGLGNVTDVDEAENAELEKKRNVVDLGLWFD-KDEEGEEADHEEIIEALKPHS-NLVALDILGFK--GK-IT 442 (607)
Q Consensus 368 ~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~--~~-~~ 442 (607)
......+..+++|++|++++| ... ...++..+..++ +|++|++++|. .. ..
T Consensus 158 ------------------~~l~~~~~~~~~L~~L~l~~~~~l~------~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~ 213 (336)
T 2ast_B 158 ------------------FALQTLLSSCSRLDELNLSWCFDFT------EKHVQVAVAHVSETITQLNLSGYRKNLQKSD 213 (336)
T ss_dssp ------------------HHHHHHHHHCTTCCEEECCCCTTCC------HHHHHHHHHHSCTTCCEEECCSCGGGSCHHH
T ss_pred ------------------HHHHHHHhcCCCCCEEcCCCCCCcC------hHHHHHHHHhcccCCCEEEeCCCcccCCHHH
Confidence 001112233344444444444 221 112333344455 67777777663 22 22
Q ss_pred CChhhhcCCCccEEEEecCCCC--CcCCCCCCCCCCCeeEecCCc-CeeeCccccCCCCCCccCCCccceeeeccc
Q 007330 443 FPKWIMSLNNLKSLHLRSCEKC--EILSPLGKLPSLETLYIAGMS-GKRVGDEFFGIGSDCNIAFPKLKFLRVVDM 515 (607)
Q Consensus 443 lp~~l~~l~~L~~L~L~~~~~~--~~~~~l~~l~~L~~L~L~~~~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 515 (607)
+|..+..+++|+.|++++|... ..++.+..+++|++|++++|. +.......+ ..+++|+.|++++|
T Consensus 214 l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l-------~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 214 LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLEL-------GEIPTLKTLQVFGI 282 (336)
T ss_dssp HHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGG-------GGCTTCCEEECTTS
T ss_pred HHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHH-------hcCCCCCEEeccCc
Confidence 4555667777777777777632 234556677777777777775 211111111 25677777777766
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.65 E-value=5.5e-16 Score=153.18 Aligned_cols=131 Identities=12% Similarity=0.017 Sum_probs=88.5
Q ss_pred CCCCeeEEEeeccchhhh--hhhhhhhccCCceeEEEecCccccccccccc-ccccc--cCcccccEEecCCCCcccC-c
Q 007330 211 KAKKLRSLLIHSEFEVSF--HVLQGLFDYLTCLRALKITGKVSWGQNSIYA-IPKEK--EKLVHLRYLKLSLLMREEL-P 284 (607)
Q Consensus 211 ~~~~L~~L~l~~~~~~~~--~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~-lp~~~--~~l~~L~~L~L~~~~i~~l-p 284 (607)
....++.+.+.+...... ..+.. +..+++|++|+++ ++.+.. .|..+ +.+++|++|++++|.+... |
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~-~~~~~~L~~L~l~------~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~ 134 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALR-VLAYSRLKELTLE------DLKITGTMPPLPLEATGLALSSLRLRNVSWATGRS 134 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHH-HHHHSCCCEEEEE------SCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTS
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHH-hcccCceeEEEee------CCEeccchhhhhhhccCCCCCEEEeecccccchhh
Confidence 445577777776641111 11122 2345679999999 677654 46666 8899999999999997753 2
Q ss_pred ----hhhhcCCcccEeecCCCCCcccc-ccccccccCccccccccccccc---CcC--CCCCCCCCCccCcEEecCCc
Q 007330 285 ----DIVCELFNLQTLEVEHCPRLKRL-PQGIGKLVNLRHLIYYYSNLDY---MPK--GFERLTCLRTLTEFVVSGGK 352 (607)
Q Consensus 285 ----~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~~~~~~l~~---lp~--~i~~l~~L~~L~~~~~~~~~ 352 (607)
..+..+++|++|++++|. +..+ |..++.+++|++|+++.|.+.. ++. .++.+++|+.|. ++++.
T Consensus 135 ~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~---Ls~N~ 208 (310)
T 4glp_A 135 WLAELQQWLKPGLKVLSIAQAH-SPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLA---LRNTG 208 (310)
T ss_dssp SHHHHHTTBCSCCCEEEEECCS-SCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCB---CCSSC
T ss_pred hhHHHHhhhccCCCEEEeeCCC-cchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEE---CCCCC
Confidence 234579999999999998 5554 4678899999999998887643 332 235666666665 55544
No 88
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.64 E-value=1.9e-16 Score=186.78 Aligned_cols=143 Identities=14% Similarity=0.115 Sum_probs=116.6
Q ss_pred cccchHHHHHHHHhcCCChHHHHHHHHHhhccCCChhHHHHHHhcccccc----cCcCC----CCchHHHHhcccCCChh
Q 007330 12 EKRKLLYESSKVQQGGVGIKTILHKFGNLLCLRRARKERGSSILDIEMGK----LNELE----NDPLAPLLLSYNDFPPM 83 (607)
Q Consensus 12 ~~~~~~~~~~~i~~~c~GlPLal~~~g~~L~~~~~~~~W~~~~~~~~~~~----l~~~~----~~i~~~L~~SYd~L~~~ 83 (607)
.++++.+++++|+++|+|+||||+++|+.|+.+. ..| +..++.+... +.... ..+..+|++||+.|+++
T Consensus 302 ~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~ 378 (1249)
T 3sfz_A 302 KKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRW-AYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED 378 (1249)
T ss_dssp CSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCH-HHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTT
T ss_pred ChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHH-HHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHH
Confidence 3456778899999999999999999999999873 468 6655433221 11111 34889999999999999
Q ss_pred hHHHhhhhcccCCCceeChhHHHHHHHHcCCcccCCCCcHHHHHHHHHHHHHHcCCCcccccCCCCCeeEEEECHHHHHH
Q 007330 84 IKLCFLYCAVFPKGYNIEKDELIKLWMAQGYIRPIGNKEMEVIGQEYFDYLATRSFFQKFDKDDEDNVTRCKMSDAVHDF 163 (607)
Q Consensus 84 ~k~cfL~~s~fp~~~~i~~~~Li~~wi~~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mhdli~~~ 163 (607)
+|.||+|||+||+++.|+++.+++.|.++ ++.++.++++|++++|++.... ++..+|+|||++|++
T Consensus 379 ~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-----------~~~~~~~l~~L~~~sl~~~~~~---~~~~~~~~h~l~~~~ 444 (1249)
T 3sfz_A 379 IKDYYTDLSILQKDVKVPTKVLCVLWDLE-----------TEEVEDILQEFVNKSLLFCNRN---GKSFCYYLHDLQVDF 444 (1249)
T ss_dssp THHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------HHHHHHHHHHHHHTTSCEEEES---SSSEEEECCHHHHHH
T ss_pred HHHHHHHhCccCCCCeeCHHHHHHHhCCC-----------HHHHHHHHHHHHhccceEEecC---CCceEEEecHHHHHH
Confidence 99999999999999999999999999655 3568999999999999986543 344679999999999
Q ss_pred HHHhhhhc
Q 007330 164 AQFLTKHE 171 (607)
Q Consensus 164 ~~~~~~~e 171 (607)
++..+.++
T Consensus 445 ~~~~~~~~ 452 (1249)
T 3sfz_A 445 LTEKNRSQ 452 (1249)
T ss_dssp HHHHTGGG
T ss_pred HHhhhhHH
Confidence 99887654
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.64 E-value=1.1e-17 Score=170.92 Aligned_cols=125 Identities=14% Similarity=0.117 Sum_probs=77.7
Q ss_pred CCccccccCCCCeeEEEeeccchh--hhhhhhhhhccCCceeEEEecCccc--ccc---cccccccccccCcccccEEec
Q 007330 203 ASFPVSIFKAKKLRSLLIHSEFEV--SFHVLQGLFDYLTCLRALKITGKVS--WGQ---NSIYAIPKEKEKLVHLRYLKL 275 (607)
Q Consensus 203 ~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~l~~L~~L~L~~~~~--~~~---~~l~~lp~~~~~l~~L~~L~L 275 (607)
..++..+..+++|++|++++|... ....+...+..+++|++|+|++|.. +.+ ..+..++..+..+++|++|+|
T Consensus 22 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 22 KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp HTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 344566677888888888887611 1122344467788888888884311 000 011122233467788888888
Q ss_pred CCCCccc-----CchhhhcCCcccEeecCCCCCccc-----cccccccc---------cCcccccccccccc
Q 007330 276 SLLMREE-----LPDIVCELFNLQTLEVEHCPRLKR-----LPQGIGKL---------VNLRHLIYYYSNLD 328 (607)
Q Consensus 276 ~~~~i~~-----lp~~i~~L~~L~~L~L~~~~~l~~-----lp~~i~~l---------~~L~~L~~~~~~l~ 328 (607)
++|.+.. +|..+.++++|++|+|++|. +.. ++..+..+ ++|++|+++.|.+.
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~ 172 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE 172 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC
Confidence 8888765 67778888888888888887 432 33333344 67777776666553
No 90
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.63 E-value=1.4e-17 Score=180.68 Aligned_cols=238 Identities=13% Similarity=0.068 Sum_probs=134.6
Q ss_pred ccccccccccCccccccccccccc--CcCCCCCCCCCCccCcEEecCCccCCCccccccc-ccccccCceEEEeccC---
Q 007330 306 RLPQGIGKLVNLRHLIYYYSNLDY--MPKGFERLTCLRTLTEFVVSGGKYSGKACNIEGL-RHLNHLGGVFRITGLG--- 379 (607)
Q Consensus 306 ~lp~~i~~l~~L~~L~~~~~~l~~--lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l-~~L~~L~~~l~i~~~~--- 379 (607)
.+|..+..+++|++|+++.+.+.. ++..+..+++|+.|. +.++. . ...+..+ ..++.|+ .+.+..+.
T Consensus 280 ~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~---l~~~~-~--~~~l~~l~~~~~~L~-~L~L~~~~~~g 352 (594)
T 2p1m_B 280 YLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLW---VLDYI-E--DAGLEVLASTCKDLR-ELRVFPSEPFV 352 (594)
T ss_dssp GGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEE---EEGGG-H--HHHHHHHHHHCTTCC-EEEEECSCTTC
T ss_pred hHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEe---CcCcc-C--HHHHHHHHHhCCCCC-EEEEecCcccc
Confidence 455555678899999977776542 222245667777776 44431 1 1111111 1234444 77774421
Q ss_pred --CCCCHhH-HHHHHhcCCCCCcceEEEecCCCCCchhcHHHHhhcC-CCCCCcceEEEe-----ecCCCCCCC------
Q 007330 380 --NVTDVDE-AENAELEKKRNVVDLGLWFDKDEEGEEADHEEIIEAL-KPHSNLVALDIL-----GFKGKITFP------ 444 (607)
Q Consensus 380 --~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~-----~~~~~~~lp------ 444 (607)
....... ........+++|+.|.+..+... ...+..+ ..+++|+.|+++ +|...+..|
T Consensus 353 ~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~-------~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~ 425 (594)
T 2p1m_B 353 MEPNVALTEQGLVSVSMGCPKLESVLYFCRQMT-------NAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFG 425 (594)
T ss_dssp SSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCC-------HHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHH
T ss_pred cccCCCCCHHHHHHHHHhchhHHHHHHhcCCcC-------HHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHH
Confidence 1112222 22233345899999987766542 2222223 246899999999 233332233
Q ss_pred hhhhcCCCccEEEEecCCCCCcCCCCCC-CCCCCeeEecCCcCeeeCccccCCCCCCccCCCccceeeeccccccccccc
Q 007330 445 KWIMSLNNLKSLHLRSCEKCEILSPLGK-LPSLETLYIAGMSGKRVGDEFFGIGSDCNIAFPKLKFLRVVDMFEWEEWGF 523 (607)
Q Consensus 445 ~~l~~l~~L~~L~L~~~~~~~~~~~l~~-l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 523 (607)
..+..+++|+.|+|+++-....+..++. +++|+.|+|++|.++..+...+. .++++|+.|++++|+. .....
T Consensus 426 ~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~------~~~~~L~~L~L~~n~~-~~~~~ 498 (594)
T 2p1m_B 426 AIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVL------SGCDSLRKLEIRDCPF-GDKAL 498 (594)
T ss_dssp HHHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHH------HHCTTCCEEEEESCSC-CHHHH
T ss_pred HHHhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHH------hcCCCcCEEECcCCCC-cHHHH
Confidence 2255789999999977322223333443 88999999999985433221111 2589999999999965 32211
Q ss_pred cccccCcccccccCCccceeeeecccCccccCCCC-CCCCCcCeEEEec
Q 007330 524 GITRSNVKEDVMVMPCLNYLDIQFCFKLKALPGYL-LEITALEKLEILC 571 (607)
Q Consensus 524 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~-~~l~~L~~L~l~~ 571 (607)
......+++|++|++++|+....-...+ ..++.|+...+..
T Consensus 499 -------~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~ 540 (594)
T 2p1m_B 499 -------LANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDE 540 (594)
T ss_dssp -------HHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECS
T ss_pred -------HHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecC
Confidence 1114468999999999997622211112 3356665555443
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.62 E-value=9e-17 Score=160.96 Aligned_cols=222 Identities=17% Similarity=0.186 Sum_probs=150.5
Q ss_pred ceeEEEEEeCCCCCccccccCC--CCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCccccccccccc--ccccccC
Q 007330 191 KFRHSMLVLGRRASFPVSIFKA--KKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYA--IPKEKEK 266 (607)
Q Consensus 191 ~~r~l~l~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~--lp~~~~~ 266 (607)
..+++.+.++.+. +..+..+ ++++.|.+.++. .....+. +..+++|++|+++ ++.+.. +|..+..
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~--l~~~~~~-~~~~~~L~~L~L~------~~~l~~~~~~~~~~~ 116 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSF--MDQPLAE-HFSPFRVQHMDLS------NSVIEVSTLHGILSQ 116 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCE--ECSCCCS-CCCCBCCCEEECT------TCEECHHHHHHHHTT
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCcc--ccccchh-hccCCCCCEEEcc------CCCcCHHHHHHHHhh
Confidence 3677777766554 4445555 899999999886 3333344 5678999999999 666653 6778899
Q ss_pred cccccEEecCCCCcc-cCchhhhcCCcccEeecCCCCCcc--ccccccccccCccccccccc-cccc--CcCCCCCCCCC
Q 007330 267 LVHLRYLKLSLLMRE-ELPDIVCELFNLQTLEVEHCPRLK--RLPQGIGKLVNLRHLIYYYS-NLDY--MPKGFERLTCL 340 (607)
Q Consensus 267 l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~--~lp~~i~~l~~L~~L~~~~~-~l~~--lp~~i~~l~~L 340 (607)
+++|++|++++|.+. ..|..++++++|++|++++|..++ .+|..+..+++|++|+++++ .+.. ++..+..++
T Consensus 117 ~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~-- 194 (336)
T 2ast_B 117 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVS-- 194 (336)
T ss_dssp BCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSC--
T ss_pred CCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcc--
Confidence 999999999999966 567789999999999999996576 37777888999999997776 5542 233233333
Q ss_pred CccCcEEecCCccCCCcccccccccccccCceEEEeccCCCCCHhHHHHHHhcCCCCCcceEEEecCCCCCchhcHHHHh
Q 007330 341 RTLTEFVVSGGKYSGKACNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAELEKKRNVVDLGLWFDKDEEGEEADHEEII 420 (607)
Q Consensus 341 ~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 420 (607)
.+|+.|++++|.. ......++
T Consensus 195 -------------------------------------------------------~~L~~L~l~~~~~----~~~~~~l~ 215 (336)
T 2ast_B 195 -------------------------------------------------------ETITQLNLSGYRK----NLQKSDLS 215 (336)
T ss_dssp -------------------------------------------------------TTCCEEECCSCGG----GSCHHHHH
T ss_pred -------------------------------------------------------cCCCEEEeCCCcc----cCCHHHHH
Confidence 0333333333310 00012334
Q ss_pred hcCCCCCCcceEEEeecC-CCCCCChhhhcCCCccEEEEecCCCCC--cCCCCCCCCCCCeeEecCC
Q 007330 421 EALKPHSNLVALDILGFK-GKITFPKWIMSLNNLKSLHLRSCEKCE--ILSPLGKLPSLETLYIAGM 484 (607)
Q Consensus 421 ~~l~~~~~L~~L~l~~~~-~~~~lp~~l~~l~~L~~L~L~~~~~~~--~~~~l~~l~~L~~L~L~~~ 484 (607)
..+..+++|+.|++++|. .....+..+..+++|++|++++|.... .+..++.+++|++|++++|
T Consensus 216 ~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 216 TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp HHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred HHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 444456677777777777 333356667777888888888875222 2234667888888888877
No 92
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.62 E-value=4.7e-17 Score=166.24 Aligned_cols=239 Identities=15% Similarity=0.154 Sum_probs=150.0
Q ss_pred hhhhhccCCceeEEEecCccccccccccc-----ccccccCcccccEEecCCCCcc----cCchhh-------hcCCccc
Q 007330 231 LQGLFDYLTCLRALKITGKVSWGQNSIYA-----IPKEKEKLVHLRYLKLSLLMRE----ELPDIV-------CELFNLQ 294 (607)
Q Consensus 231 ~~~~~~~l~~L~~L~L~~~~~~~~~~l~~-----lp~~~~~l~~L~~L~L~~~~i~----~lp~~i-------~~L~~L~ 294 (607)
+...+..+++|++|+|+ ++.+.. ++..+..+++|++|+|++|.+. .+|..+ .++++|+
T Consensus 24 l~~~l~~~~~L~~L~L~------~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~ 97 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLS------GNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLH 97 (386)
T ss_dssp TSHHHHHCSCCCEEECT------TSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCC
T ss_pred HHHHHhcCCCccEEECC------CCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCccc
Confidence 45557889999999999 555543 4556778999999999998654 345444 6899999
Q ss_pred EeecCCCCCccc-----cccccccccCccccccccccccc-----CcCCCCCC---------CCCCccCcEEecCCccCC
Q 007330 295 TLEVEHCPRLKR-----LPQGIGKLVNLRHLIYYYSNLDY-----MPKGFERL---------TCLRTLTEFVVSGGKYSG 355 (607)
Q Consensus 295 ~L~L~~~~~l~~-----lp~~i~~l~~L~~L~~~~~~l~~-----lp~~i~~l---------~~L~~L~~~~~~~~~~~~ 355 (607)
+|+|++|. +.. +|..+..+++|++|+++.|.+.. ++..+..+ ++|++|. ++++.+.
T Consensus 98 ~L~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~---L~~n~l~- 172 (386)
T 2ca6_A 98 TVRLSDNA-FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSII---CGRNRLE- 172 (386)
T ss_dssp EEECCSCC-CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEE---CCSSCCT-
T ss_pred EEECCCCc-CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEE---CCCCCCC-
Confidence 99999998 554 78888999999999998888752 22222222 3333333 4444321
Q ss_pred CcccccccccccccCceEEEeccCCCCCHhHHHHHHhcCCCCCcceEEEecCCCCCchhcHHHHhh-cCCCCCCcceEEE
Q 007330 356 KACNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAELEKKRNVVDLGLWFDKDEEGEEADHEEIIE-ALKPHSNLVALDI 434 (607)
Q Consensus 356 ~~~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l 434 (607)
..........+..+++|+.|++++|.... .....+.+ .+..+++|+.|++
T Consensus 173 --------------------------~~~~~~l~~~l~~~~~L~~L~L~~n~l~~---~g~~~l~~~~l~~~~~L~~L~L 223 (386)
T 2ca6_A 173 --------------------------NGSMKEWAKTFQSHRLLHTVKMVQNGIRP---EGIEHLLLEGLAYCQELKVLDL 223 (386)
T ss_dssp --------------------------GGGHHHHHHHHHHCTTCCEEECCSSCCCH---HHHHHHHHTTGGGCTTCCEEEC
T ss_pred --------------------------cHHHHHHHHHHHhCCCcCEEECcCCCCCH---hHHHHHHHHHhhcCCCccEEEC
Confidence 01111222345566677777777775421 00112333 6667777777777
Q ss_pred eecCCC----CCCChhhhcCCCccEEEEecCCCCCc-----CCCC--CCCCCCCeeEecCCcCee-----eCccccCCCC
Q 007330 435 LGFKGK----ITFPKWIMSLNNLKSLHLRSCEKCEI-----LSPL--GKLPSLETLYIAGMSGKR-----VGDEFFGIGS 498 (607)
Q Consensus 435 ~~~~~~----~~lp~~l~~l~~L~~L~L~~~~~~~~-----~~~l--~~l~~L~~L~L~~~~~~~-----~~~~~~~~~~ 498 (607)
++|.+. ..+|..+..+++|++|+|++|..... +..+ +.+++|++|+|++|.++. ++..+.
T Consensus 224 s~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~---- 299 (386)
T 2ca6_A 224 QDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID---- 299 (386)
T ss_dssp CSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHH----
T ss_pred cCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHH----
Confidence 777763 33566667777777777777754332 1223 347777777777777554 333221
Q ss_pred CCccCCCccceeeecccc
Q 007330 499 DCNIAFPKLKFLRVVDMF 516 (607)
Q Consensus 499 ~~~~~~~~L~~L~l~~~~ 516 (607)
..+++|++|++++++
T Consensus 300 ---~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 300 ---EKMPDLLFLELNGNR 314 (386)
T ss_dssp ---HHCTTCCEEECTTSB
T ss_pred ---hcCCCceEEEccCCc
Confidence 135677777777663
No 93
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.60 E-value=2.6e-15 Score=146.55 Aligned_cols=62 Identities=18% Similarity=0.125 Sum_probs=39.9
Q ss_pred CCCCcceEEEeecCCCCCCChhhhcCCCccEEEEecCCCCCcCCCCCCCCCCCeeEecCCcCeee
Q 007330 425 PHSNLVALDILGFKGKITFPKWIMSLNNLKSLHLRSCEKCEILSPLGKLPSLETLYIAGMSGKRV 489 (607)
Q Consensus 425 ~~~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~ 489 (607)
.+++|+.|++++|.+.. ++. +..+++|+.|++++|. .+.++.+..+++|+.|++++|++...
T Consensus 154 ~l~~L~~L~L~~N~l~~-~~~-l~~l~~L~~L~L~~N~-i~~l~~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 154 RLTKLDTLSLEDNQISD-IVP-LAGLTKLQNLYLSKNH-ISDLRALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp GCTTCSEEECCSSCCCC-CGG-GTTCTTCCEEECCSSC-CCBCGGGTTCTTCSEEEEEEEEEECC
T ss_pred cCCCCCEEEccCCcccc-chh-hcCCCccCEEECCCCc-CCCChhhccCCCCCEEECcCCcccCC
Confidence 44566666666666665 444 6677777777777774 33345567777777777777764443
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.59 E-value=5.5e-15 Score=148.56 Aligned_cols=217 Identities=14% Similarity=0.053 Sum_probs=125.0
Q ss_pred CceeEEEecCcccccccccccccc-cccCcccccEEecCCCCc-ccCchh-hhcCCcccEeecCCCCCccccc-cccccc
Q 007330 239 TCLRALKITGKVSWGQNSIYAIPK-EKEKLVHLRYLKLSLLMR-EELPDI-VCELFNLQTLEVEHCPRLKRLP-QGIGKL 314 (607)
Q Consensus 239 ~~L~~L~L~~~~~~~~~~l~~lp~-~~~~l~~L~~L~L~~~~i-~~lp~~-i~~L~~L~~L~L~~~~~l~~lp-~~i~~l 314 (607)
+++++|+|+ ++.++.+|. .|.++++|++|+|++|.+ +.+|.. +.++++|+++...++..+..+| ..+..+
T Consensus 30 ~~l~~L~Ls------~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l 103 (350)
T 4ay9_X 30 RNAIELRFV------LTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNL 103 (350)
T ss_dssp TTCSEEEEE------SCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCC
T ss_pred CCCCEEEcc------CCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhc
Confidence 356666666 666666654 466677777777777664 344432 4566666554433333366553 345667
Q ss_pred cCcccccccccccccCcCC-CCCCCCCCccCcEEecC-CccCCCcccccccccccccCceEEEeccCCCCCHhHHHHHHh
Q 007330 315 VNLRHLIYYYSNLDYMPKG-FERLTCLRTLTEFVVSG-GKYSGKACNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAEL 392 (607)
Q Consensus 315 ~~L~~L~~~~~~l~~lp~~-i~~l~~L~~L~~~~~~~-~~~~~~~~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l 392 (607)
++|++|+++.|.+..+|.. .....++..|. +.. +.+..... ..+
T Consensus 104 ~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~---l~~~~~i~~l~~-------------------------------~~f 149 (350)
T 4ay9_X 104 PNLQYLLISNTGIKHLPDVHKIHSLQKVLLD---IQDNINIHTIER-------------------------------NSF 149 (350)
T ss_dssp TTCCEEEEEEECCSSCCCCTTCCBSSCEEEE---EESCTTCCEECT-------------------------------TSS
T ss_pred cccccccccccccccCCchhhcccchhhhhh---hccccccccccc-------------------------------cch
Confidence 7777777766666666542 11222222221 211 11000000 000
Q ss_pred cC-CCCCcceEEEecCCCCCchhcHHHHhhcCCCCCCcceEEEeecCCCCCCChh-hhcCCCccEEEEecCCCCCcCCCC
Q 007330 393 EK-KRNVVDLGLWFDKDEEGEEADHEEIIEALKPHSNLVALDILGFKGKITFPKW-IMSLNNLKSLHLRSCEKCEILSPL 470 (607)
Q Consensus 393 ~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~-l~~l~~L~~L~L~~~~~~~~~~~l 470 (607)
.. ...++.|+++.|... .++.......+|+.|.+.++...+.+|.. +..+++|+.|+|++|... .+|.
T Consensus 150 ~~~~~~l~~L~L~~N~i~--------~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~- 219 (350)
T 4ay9_X 150 VGLSFESVILWLNKNGIQ--------EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPS- 219 (350)
T ss_dssp TTSBSSCEEEECCSSCCC--------EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCS-
T ss_pred hhcchhhhhhcccccccc--------CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccCh-
Confidence 11 123455566555432 23334445568899999865555558864 579999999999999544 4443
Q ss_pred CCCCCCCeeEecCCc-CeeeCccccCCCCCCccCCCccceeeecc
Q 007330 471 GKLPSLETLYIAGMS-GKRVGDEFFGIGSDCNIAFPKLKFLRVVD 514 (607)
Q Consensus 471 ~~l~~L~~L~L~~~~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 514 (607)
..+.+|+.|.+.++. ++.+|. + ..|++|+.+++.+
T Consensus 220 ~~~~~L~~L~~l~~~~l~~lP~--l-------~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 220 YGLENLKKLRARSTYNLKKLPT--L-------EKLVALMEASLTY 255 (350)
T ss_dssp SSCTTCCEEECTTCTTCCCCCC--T-------TTCCSCCEEECSC
T ss_pred hhhccchHhhhccCCCcCcCCC--c-------hhCcChhhCcCCC
Confidence 447788888887777 777763 1 3789999999875
No 95
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.58 E-value=9e-16 Score=166.54 Aligned_cols=118 Identities=13% Similarity=0.028 Sum_probs=99.6
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhhccCC-ChhHHHHHHhcccccccCcCCCCchHHHHhcccCCChhh-HHHhhhhcccC
Q 007330 18 YESSKVQQGGVGIKTILHKFGNLLCLRR-ARKERGSSILDIEMGKLNELENDPLAPLLLSYNDFPPMI-KLCFLYCAVFP 95 (607)
Q Consensus 18 ~~~~~i~~~c~GlPLal~~~g~~L~~~~-~~~~W~~~~~~~~~~~l~~~~~~i~~~L~~SYd~L~~~~-k~cfL~~s~fp 95 (607)
+++.+| |+|+||||+++|+.|+++. +.++| +.. ....+..+|++||+.||+++ |.||+|||+||
T Consensus 317 eL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW-~~~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFP 382 (1221)
T 1vt4_I 317 DLPREV---LTTNPRRLSIIAESIRDGLATWDNW-KHV----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382 (1221)
T ss_dssp THHHHH---CCCCHHHHHHHHHHHHHSCSSHHHH-HHC----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSC
T ss_pred HHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHH-hcC----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCC
Confidence 444444 9999999999999999884 67889 543 12359999999999999999 99999999999
Q ss_pred CCceeChhHHHHHHHHcCCcccCCCCcHHHHHHHHHHHHHHcCCCcccccCCCCCeeEEEECHHHHHHH
Q 007330 96 KGYNIEKDELIKLWMAQGYIRPIGNKEMEVIGQEYFDYLATRSFFQKFDKDDEDNVTRCKMSDAVHDFA 164 (607)
Q Consensus 96 ~~~~i~~~~Li~~wi~~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mhdli~~~~ 164 (607)
+++.|+++.++..|+++| ++.++.++++|+++||++... ...+|+|||++++++
T Consensus 383 ed~~I~~elLa~LW~aeG----------eedAe~~L~eLvdRSLLq~d~-----~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 383 PSAHIPTILLSLIWFDVI----------KSDVMVVVNKLHKYSLVEKQP-----KESTISIPSIYLELK 436 (1221)
T ss_dssp TTSCEEHHHHHHHHCSSC----------SHHHHHHHHHHHTSSSSSBCS-----SSSEEBCCCHHHHHH
T ss_pred CCCCCCHHHHHHHhcCCC----------HHHHHHHHHHHHhhCCEEEeC-----CCCEEEehHHHHHHh
Confidence 999999999999999988 134888999999999999842 125699999999865
No 96
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.58 E-value=2.8e-14 Score=136.22 Aligned_cols=173 Identities=20% Similarity=0.230 Sum_probs=117.2
Q ss_pred CceeEEEecCcccccccccccccccccCcccccEEecCCCCcccCch-hhhcCCcccEeecCCCCCcccccc-ccccccC
Q 007330 239 TCLRALKITGKVSWGQNSIYAIPKEKEKLVHLRYLKLSLLMREELPD-IVCELFNLQTLEVEHCPRLKRLPQ-GIGKLVN 316 (607)
Q Consensus 239 ~~L~~L~L~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~ 316 (607)
...++++++ ++.++.+|..+. .+|++|++++|.+..++. .+.++++|++|+|++|. +..++. .+..+++
T Consensus 14 ~~~~~l~~~------~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~ 84 (251)
T 3m19_A 14 EGKKEVDCQ------GKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTE 84 (251)
T ss_dssp GGGTEEECT------TCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTT
T ss_pred CCCeEEecC------CCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc-CCccCHhHhccCCc
Confidence 456788888 788888887765 689999999999887765 48889999999999987 665544 4688889
Q ss_pred cccccccccccccCcCC-CCCCCCCCccCcEEecCCccCCCcccccccccccccCceEEEeccCCCCCHhHHHHHHhcCC
Q 007330 317 LRHLIYYYSNLDYMPKG-FERLTCLRTLTEFVVSGGKYSGKACNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAELEKK 395 (607)
Q Consensus 317 L~~L~~~~~~l~~lp~~-i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~ 395 (607)
|++|+++.|.+..+|.. +..+++|+.|. ++++.+...+
T Consensus 85 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~---L~~N~l~~~~-------------------------------------- 123 (251)
T 3m19_A 85 LGTLGLANNQLASLPLGVFDHLTQLDKLY---LGGNQLKSLP-------------------------------------- 123 (251)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEE---CCSSCCCCCC--------------------------------------
T ss_pred CCEEECCCCcccccChhHhcccCCCCEEE---cCCCcCCCcC--------------------------------------
Confidence 99999888888777643 34444444443 4444311100
Q ss_pred CCCcceEEEecCCCCCchhcHHHHhhcCCCCCCcceEEEeecCCCCCCCh-hhhcCCCccEEEEecCCCCCcCC-CCCCC
Q 007330 396 RNVVDLGLWFDKDEEGEEADHEEIIEALKPHSNLVALDILGFKGKITFPK-WIMSLNNLKSLHLRSCEKCEILS-PLGKL 473 (607)
Q Consensus 396 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~L~~~~~~~~~~-~l~~l 473 (607)
+..+..+++|+.|++++|.+.. +|. .+..+++|+.|+|++|.....++ .+..+
T Consensus 124 ------------------------~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 178 (251)
T 3m19_A 124 ------------------------SGVFDRLTKLKELRLNTNQLQS-IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRL 178 (251)
T ss_dssp ------------------------TTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred ------------------------hhHhccCCcccEEECcCCcCCc-cCHHHcCcCcCCCEEECCCCcCCccCHHHHhCC
Confidence 0123445677777777777766 444 56677777777777775444333 36667
Q ss_pred CCCCeeEecCCcC
Q 007330 474 PSLETLYIAGMSG 486 (607)
Q Consensus 474 ~~L~~L~L~~~~~ 486 (607)
++|++|++++|++
T Consensus 179 ~~L~~L~l~~N~~ 191 (251)
T 3m19_A 179 GKLQTITLFGNQF 191 (251)
T ss_dssp TTCCEEECCSCCB
T ss_pred CCCCEEEeeCCce
Confidence 7777777777763
No 97
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.57 E-value=5.9e-15 Score=158.03 Aligned_cols=64 Identities=19% Similarity=0.137 Sum_probs=38.0
Q ss_pred CCCCCCcceEEEeecCCCCCCChhhhcCCCccEEEEecCCCCCcCCCCCCCCCCCeeEecCCcCeee
Q 007330 423 LKPHSNLVALDILGFKGKITFPKWIMSLNNLKSLHLRSCEKCEILSPLGKLPSLETLYIAGMSGKRV 489 (607)
Q Consensus 423 l~~~~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~ 489 (607)
+..+++|+.|+|++|.+.. ++. +..+++|+.|+|++|.. ..++.+..+++|+.|+|++|++...
T Consensus 149 l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls~N~i-~~l~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 149 LSRLTKLDTLSLEDNQISD-IVP-LAGLTKLQNLYLSKNHI-SDLRALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp GGSCTTCSEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCC-CBCGGGTTCTTCSEEECCSEEEECC
T ss_pred hcccCCCCEEECcCCcCCC-chh-hccCCCCCEEECcCCCC-CCChHHccCCCCCEEEccCCcCcCC
Confidence 3445566666666666655 333 56666677777766633 3345566666777777766664433
No 98
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.56 E-value=5.2e-15 Score=146.11 Aligned_cols=201 Identities=15% Similarity=0.078 Sum_probs=108.3
Q ss_pred CCCeeEEEeeccchhhhhhhhhhh--ccCCceeEEEecCcccccccccccc-c----ccccCcccccEEecCCCCcccCc
Q 007330 212 AKKLRSLLIHSEFEVSFHVLQGLF--DYLTCLRALKITGKVSWGQNSIYAI-P----KEKEKLVHLRYLKLSLLMREELP 284 (607)
Q Consensus 212 ~~~L~~L~l~~~~~~~~~~~~~~~--~~l~~L~~L~L~~~~~~~~~~l~~l-p----~~~~~l~~L~~L~L~~~~i~~lp 284 (607)
+++|+.|++++|. .....+..+ ..+++|++|+++ ++.+... | ..+..+++|++|++++|.+..+|
T Consensus 90 ~~~L~~L~l~~n~--l~~~~~~~~~~~~~~~L~~L~Ls------~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 161 (310)
T 4glp_A 90 YSRLKELTLEDLK--ITGTMPPLPLEATGLALSSLRLR------NVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFS 161 (310)
T ss_dssp HSCCCEEEEESCC--CBSCCCCCSSSCCCBCCSSCEEE------SCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCC
T ss_pred cCceeEEEeeCCE--eccchhhhhhhccCCCCCEEEee------cccccchhhhhHHHHhhhccCCCEEEeeCCCcchhh
Confidence 3456666666654 222222223 556666666666 4444321 1 22334566666666666655554
Q ss_pred -hhhhcCCcccEeecCCCCCccc--ccc--ccccccCcccccccccccccCcCC----CCCCCCCCccCcEEecCCccCC
Q 007330 285 -DIVCELFNLQTLEVEHCPRLKR--LPQ--GIGKLVNLRHLIYYYSNLDYMPKG----FERLTCLRTLTEFVVSGGKYSG 355 (607)
Q Consensus 285 -~~i~~L~~L~~L~L~~~~~l~~--lp~--~i~~l~~L~~L~~~~~~l~~lp~~----i~~l~~L~~L~~~~~~~~~~~~ 355 (607)
..++++++|++|+|++|..... +|. .++.+++|++|+++.|++..+|.. ++.+++|++|+ ++++.+.+
T Consensus 162 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~---Ls~N~l~~ 238 (310)
T 4glp_A 162 CEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLD---LSHNSLRA 238 (310)
T ss_dssp TTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEE---CTTSCCCC
T ss_pred HHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEE---CCCCCCCc
Confidence 3455666666666666652221 221 224566666666666666544432 23334444433 55444221
Q ss_pred C-cccccccccccccCceEEEeccCCCCCHhHHHHHHhcCCCCCcceEEEecCCCCCchhcHHHHhhcCCCCCCcceEEE
Q 007330 356 K-ACNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAELEKKRNVVDLGLWFDKDEEGEEADHEEIIEALKPHSNLVALDI 434 (607)
Q Consensus 356 ~-~~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 434 (607)
. +..+. .+..+++|++|++
T Consensus 239 ~~p~~~~------------------------------------------------------------~~~~~~~L~~L~L 258 (310)
T 4glp_A 239 TVNPSAP------------------------------------------------------------RCMWSSALNSLNL 258 (310)
T ss_dssp CCCSCCS------------------------------------------------------------SCCCCTTCCCEEC
T ss_pred cchhhHH------------------------------------------------------------hccCcCcCCEEEC
Confidence 1 00000 0112356777777
Q ss_pred eecCCCCCCChhhhcCCCccEEEEecCCCCCcCCCCCCCCCCCeeEecCCcCe
Q 007330 435 LGFKGKITFPKWIMSLNNLKSLHLRSCEKCEILSPLGKLPSLETLYIAGMSGK 487 (607)
Q Consensus 435 ~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 487 (607)
++|.+.. +|..+. ++|+.|+|++|... .++.+..+++|+.|++++|+++
T Consensus 259 s~N~l~~-lp~~~~--~~L~~L~Ls~N~l~-~~~~~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 259 SFAGLEQ-VPKGLP--AKLRVLDLSSNRLN-RAPQPDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CSSCCCS-CCSCCC--SCCSCEECCSCCCC-SCCCTTSCCCCSCEECSSTTTS
T ss_pred CCCCCCc-hhhhhc--CCCCEEECCCCcCC-CCchhhhCCCccEEECcCCCCC
Confidence 7777765 776553 78888888888543 3355677888888888888754
No 99
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.55 E-value=9.7e-16 Score=154.91 Aligned_cols=94 Identities=13% Similarity=0.140 Sum_probs=56.6
Q ss_pred hhhhhhccCCceeEEEecCccccccccccccc-----ccccCcc-cccEEecCCCCcccC-chhhhcC-----CcccEee
Q 007330 230 VLQGLFDYLTCLRALKITGKVSWGQNSIYAIP-----KEKEKLV-HLRYLKLSLLMREEL-PDIVCEL-----FNLQTLE 297 (607)
Q Consensus 230 ~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp-----~~~~~l~-~L~~L~L~~~~i~~l-p~~i~~L-----~~L~~L~ 297 (607)
.++.++...++|++|+++ ++.+...+ ..+..++ +|++|++++|.+... +..+..+ ++|++|+
T Consensus 13 ~~~~~~~~~~~L~~L~Ls------~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~ 86 (362)
T 3goz_A 13 PVEEFTSIPHGVTSLDLS------LNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLN 86 (362)
T ss_dssp HHHHHHTSCTTCCEEECT------TSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEE
T ss_pred HHHHHHhCCCCceEEEcc------CCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEE
Confidence 345555555557777777 55555543 4555666 677777777776655 3344443 7777777
Q ss_pred cCCCCCcccc-ccc----cccc-cCcccccccccccccC
Q 007330 298 VEHCPRLKRL-PQG----IGKL-VNLRHLIYYYSNLDYM 330 (607)
Q Consensus 298 L~~~~~l~~l-p~~----i~~l-~~L~~L~~~~~~l~~l 330 (607)
|++|. ++.. +.. +..+ ++|++|+++.|.+...
T Consensus 87 Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 124 (362)
T 3goz_A 87 LSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK 124 (362)
T ss_dssp CCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred CcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCcCCcH
Confidence 77776 4433 232 2333 6777777766666544
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.54 E-value=3e-14 Score=138.98 Aligned_cols=170 Identities=18% Similarity=0.201 Sum_probs=116.4
Q ss_pred ccCcccccEEecCCCCcccCchhhhcCCcccEeecCCCCCccccccccccccCcccccccccccccCcCCCCCCCCCCcc
Q 007330 264 KEKLVHLRYLKLSLLMREELPDIVCELFNLQTLEVEHCPRLKRLPQGIGKLVNLRHLIYYYSNLDYMPKGFERLTCLRTL 343 (607)
Q Consensus 264 ~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~l~~lp~~i~~l~~L~~L 343 (607)
+..+++|++|++++|.+..+|. +..+++|++|++++|. +..++. +..+++|++|+++.|.+..+|. +..+++|+.|
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L 117 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSL 117 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEE
T ss_pred hhhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCc-cCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEE
Confidence 4456677777777777777653 6677777777777766 666654 6777777777777766665543 4444444443
Q ss_pred CcEEecCCccCCCcccccccccccccCceEEEeccCCCCCHhHHHHHHhcCCCCCcceEEEecCCCCCchhcHHHHhhcC
Q 007330 344 TEFVVSGGKYSGKACNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAELEKKRNVVDLGLWFDKDEEGEEADHEEIIEAL 423 (607)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l 423 (607)
. ++++.+... ..+
T Consensus 118 ~---L~~n~i~~~----------------------------------------------------------------~~l 130 (291)
T 1h6t_A 118 S---LEHNGISDI----------------------------------------------------------------NGL 130 (291)
T ss_dssp E---CTTSCCCCC----------------------------------------------------------------GGG
T ss_pred E---CCCCcCCCC----------------------------------------------------------------hhh
Confidence 3 444431110 112
Q ss_pred CCCCCcceEEEeecCCCCCCChhhhcCCCccEEEEecCCCCCcCCCCCCCCCCCeeEecCCcCeeeCccccCCCCCCccC
Q 007330 424 KPHSNLVALDILGFKGKITFPKWIMSLNNLKSLHLRSCEKCEILSPLGKLPSLETLYIAGMSGKRVGDEFFGIGSDCNIA 503 (607)
Q Consensus 424 ~~~~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~ 503 (607)
..+++|+.|++++|.+.. + ..+..+++|+.|++++|..... +.+..+++|+.|++++|.++.++. + ..
T Consensus 131 ~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~N~l~~~-~~l~~l~~L~~L~L~~N~i~~l~~--l-------~~ 198 (291)
T 1h6t_A 131 VHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHISDLRA--L-------AG 198 (291)
T ss_dssp GGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCBCGG--G-------TT
T ss_pred cCCCCCCEEEccCCcCCc-c-hhhccCCCCCEEEccCCccccc-hhhcCCCccCEEECCCCcCCCChh--h-------cc
Confidence 345677778888887776 4 5688999999999999965444 348999999999999999777653 2 37
Q ss_pred CCccceeeecccc
Q 007330 504 FPKLKFLRVVDMF 516 (607)
Q Consensus 504 ~~~L~~L~l~~~~ 516 (607)
+++|+.|++++++
T Consensus 199 l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 199 LKNLDVLELFSQE 211 (291)
T ss_dssp CTTCSEEEEEEEE
T ss_pred CCCCCEEECcCCc
Confidence 8899999999873
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.54 E-value=1.6e-14 Score=152.95 Aligned_cols=93 Identities=17% Similarity=0.266 Sum_probs=71.2
Q ss_pred CceeEEEecCcccccccccccccccccCcccccEEecCCCCcccCchhhhcCCcccEeecCCCCCccccccccccccCcc
Q 007330 239 TCLRALKITGKVSWGQNSIYAIPKEKEKLVHLRYLKLSLLMREELPDIVCELFNLQTLEVEHCPRLKRLPQGIGKLVNLR 318 (607)
Q Consensus 239 ~~L~~L~L~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~ 318 (607)
.+|++|+++ ++.+..+|..+. ++|++|++++|.++.+| +.+++|++|++++|. ++.+|. +.. +|+
T Consensus 59 ~~L~~L~Ls------~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L~ 123 (571)
T 3cvr_A 59 NQFSELQLN------RLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SLK 123 (571)
T ss_dssp TTCSEEECC------SSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TCC
T ss_pred CCccEEEeC------CCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCC-CCCcch-hhc--CCC
Confidence 478889998 777877887663 78999999999888888 557889999999886 777887 655 888
Q ss_pred cccccccccccCcCCCCCCCCCCccCcEEecCCc
Q 007330 319 HLIYYYSNLDYMPKGFERLTCLRTLTEFVVSGGK 352 (607)
Q Consensus 319 ~L~~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~ 352 (607)
+|+++.|.+..+|. .+++|+.|. ++++.
T Consensus 124 ~L~Ls~N~l~~lp~---~l~~L~~L~---Ls~N~ 151 (571)
T 3cvr_A 124 HLDVDNNQLTMLPE---LPALLEYIN---ADNNQ 151 (571)
T ss_dssp EEECCSSCCSCCCC---CCTTCCEEE---CCSSC
T ss_pred EEECCCCcCCCCCC---cCccccEEe---CCCCc
Confidence 88888888888776 344444443 66655
No 102
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.53 E-value=7.1e-15 Score=141.14 Aligned_cols=172 Identities=18% Similarity=0.165 Sum_probs=122.9
Q ss_pred cCCceeEEEecCcccccccccccccccccCcccccEEecCCCCcccCchhhhcCCcccEeecCCCCCccccccccccccC
Q 007330 237 YLTCLRALKITGKVSWGQNSIYAIPKEKEKLVHLRYLKLSLLMREELPDIVCELFNLQTLEVEHCPRLKRLPQGIGKLVN 316 (607)
Q Consensus 237 ~l~~L~~L~L~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~ 316 (607)
.+..+..++++ .+.++.++ .+..+++|++|++++|.+..+| .++.+++|++|++++|. +..+|. +..+++
T Consensus 17 ~l~~l~~l~l~------~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~ 86 (263)
T 1xeu_A 17 GLANAVKQNLG------KQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTK 86 (263)
T ss_dssp HHHHHHHHHHT------CSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSS
T ss_pred HHHHHHHHHhc------CCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCC
Confidence 45556666777 67777776 5778888888888888888887 58888888888888886 777776 888888
Q ss_pred cccccccccccccCcCCCCCCCCCCccCcEEecCCccCCCcccccccccccccCceEEEeccCCCCCHhHHHHHHhcCCC
Q 007330 317 LRHLIYYYSNLDYMPKGFERLTCLRTLTEFVVSGGKYSGKACNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAELEKKR 396 (607)
Q Consensus 317 L~~L~~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~ 396 (607)
|++|+++.|.+..+|.... ++|+.|. ++++.+..
T Consensus 87 L~~L~L~~N~l~~l~~~~~--~~L~~L~---L~~N~l~~----------------------------------------- 120 (263)
T 1xeu_A 87 LEELSVNRNRLKNLNGIPS--ACLSRLF---LDNNELRD----------------------------------------- 120 (263)
T ss_dssp CCEEECCSSCCSCCTTCCC--SSCCEEE---CCSSCCSB-----------------------------------------
T ss_pred CCEEECCCCccCCcCcccc--CcccEEE---ccCCccCC-----------------------------------------
Confidence 8888888888777654222 3333332 44443110
Q ss_pred CCcceEEEecCCCCCchhcHHHHhhcCCCCCCcceEEEeecCCCCCCChhhhcCCCccEEEEecCCCCCcCCCCCCCCCC
Q 007330 397 NVVDLGLWFDKDEEGEEADHEEIIEALKPHSNLVALDILGFKGKITFPKWIMSLNNLKSLHLRSCEKCEILSPLGKLPSL 476 (607)
Q Consensus 397 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~l~~L 476 (607)
++.+..+++|+.|++++|.+.. +| .+..+++|+.|++++|.... ...+..+++|
T Consensus 121 -----------------------~~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~-~~~l~~l~~L 174 (263)
T 1xeu_A 121 -----------------------TDSLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITN-TGGLTRLKKV 174 (263)
T ss_dssp -----------------------SGGGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCB-CTTSTTCCCC
T ss_pred -----------------------ChhhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcc-hHHhccCCCC
Confidence 0124456778888888888776 55 57788999999999885444 3778889999
Q ss_pred CeeEecCCcCeeeC
Q 007330 477 ETLYIAGMSGKRVG 490 (607)
Q Consensus 477 ~~L~L~~~~~~~~~ 490 (607)
+.|++++|.+...+
T Consensus 175 ~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 175 NWIDLTGQKCVNEP 188 (263)
T ss_dssp CEEEEEEEEEECCC
T ss_pred CEEeCCCCcccCCc
Confidence 99999988755444
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.52 E-value=1.6e-14 Score=154.65 Aligned_cols=179 Identities=17% Similarity=0.178 Sum_probs=130.6
Q ss_pred ccccccccccccCcccccEEecCCCCcccCchhhhcCCcccEeecCCCCCccccccccccccCcccccccccccccCcCC
Q 007330 254 QNSIYAIPKEKEKLVHLRYLKLSLLMREELPDIVCELFNLQTLEVEHCPRLKRLPQGIGKLVNLRHLIYYYSNLDYMPKG 333 (607)
Q Consensus 254 ~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~l~~lp~~ 333 (607)
...+..++ .+..+.+|++|++++|.+..+| .+..|++|++|+|++|. +..+|. +..+++|++|+++.|.+..+| .
T Consensus 30 ~~~i~~~~-~~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~ 104 (605)
T 1m9s_A 30 KKSVTDAV-TQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDENKIKDLS-S 104 (605)
T ss_dssp CSCTTSEE-CHHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSSCCCCCT-T
T ss_pred CCCccccc-chhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCCCCCCCh-h
Confidence 44554443 3567788888888888888886 48888888888888887 777765 888888888888888877665 4
Q ss_pred CCCCCCCCccCcEEecCCccCCCcccccccccccccCceEEEeccCCCCCHhHHHHHHhcCCCCCcceEEEecCCCCCch
Q 007330 334 FERLTCLRTLTEFVVSGGKYSGKACNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAELEKKRNVVDLGLWFDKDEEGEE 413 (607)
Q Consensus 334 i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 413 (607)
+..+++|+.|. ++.+.+...
T Consensus 105 l~~l~~L~~L~---Ls~N~l~~l--------------------------------------------------------- 124 (605)
T 1m9s_A 105 LKDLKKLKSLS---LEHNGISDI--------------------------------------------------------- 124 (605)
T ss_dssp STTCTTCCEEE---CTTSCCCCC---------------------------------------------------------
T ss_pred hccCCCCCEEE---ecCCCCCCC---------------------------------------------------------
Confidence 55555555443 554441110
Q ss_pred hcHHHHhhcCCCCCCcceEEEeecCCCCCCChhhhcCCCccEEEEecCCCCCcCCCCCCCCCCCeeEecCCcCeeeCccc
Q 007330 414 ADHEEIIEALKPHSNLVALDILGFKGKITFPKWIMSLNNLKSLHLRSCEKCEILSPLGKLPSLETLYIAGMSGKRVGDEF 493 (607)
Q Consensus 414 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~ 493 (607)
+.+..+++|+.|+|++|.+.. + ..+..+++|+.|+|++|......+ +..+++|+.|+|++|.+..++.
T Consensus 125 -------~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~~-- 192 (605)
T 1m9s_A 125 -------NGLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA-- 192 (605)
T ss_dssp -------GGGGGCTTCSEEECCSSCCCC-C-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG--
T ss_pred -------ccccCCCccCEEECCCCccCC-c-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCChH--
Confidence 113345678888888888777 5 568899999999999996555444 8999999999999999776642
Q ss_pred cCCCCCCccCCCccceeeecccc
Q 007330 494 FGIGSDCNIAFPKLKFLRVVDMF 516 (607)
Q Consensus 494 ~~~~~~~~~~~~~L~~L~l~~~~ 516 (607)
+ ..+++|+.|++++++
T Consensus 193 l-------~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 193 L-------AGLKNLDVLELFSQE 208 (605)
T ss_dssp G-------TTCTTCSEEECCSEE
T ss_pred H-------ccCCCCCEEEccCCc
Confidence 2 378999999999874
No 104
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.50 E-value=5.4e-14 Score=134.22 Aligned_cols=152 Identities=26% Similarity=0.321 Sum_probs=86.4
Q ss_pred CceeEEEEEeCCCCCcc-ccccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCccccccccccccc-ccccCc
Q 007330 190 EKFRHSMLVLGRRASFP-VSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIP-KEKEKL 267 (607)
Q Consensus 190 ~~~r~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp-~~~~~l 267 (607)
..++.+.+.++.+..++ ..+..+++|++|++++|. .....+..+..+++|++|+++ ++.+..+| ..++.+
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~------~n~l~~~~~~~~~~l 106 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ--LQTLSAGVFDDLTELGTLGLA------NNQLASLPLGVFDHL 106 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC--CCCCCTTTTTTCTTCCEEECT------TSCCCCCCTTTTTTC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc--CCccCHhHhccCCcCCEEECC------CCcccccChhHhccc
Confidence 45666666666655443 245566666666666664 333344445666666666666 55555554 334566
Q ss_pred ccccEEecCCCCcccCchh-hhcCCcccEeecCCCCCcccccc-ccccccCcccccccccccccCcC-CCCCCCCCCccC
Q 007330 268 VHLRYLKLSLLMREELPDI-VCELFNLQTLEVEHCPRLKRLPQ-GIGKLVNLRHLIYYYSNLDYMPK-GFERLTCLRTLT 344 (607)
Q Consensus 268 ~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~~~~~~l~~lp~-~i~~l~~L~~L~ 344 (607)
++|++|++++|.+..+|.. +.++++|++|+|++|. +..+|. .++.+++|++|+++.|.+..+|. .+..+++|+.|.
T Consensus 107 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 185 (251)
T 3m19_A 107 TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTIT 185 (251)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEE
Confidence 6666666666666666554 3566666666666665 555554 35666666666666666665554 233444443333
Q ss_pred cEEecCCcc
Q 007330 345 EFVVSGGKY 353 (607)
Q Consensus 345 ~~~~~~~~~ 353 (607)
++++.+
T Consensus 186 ---l~~N~~ 191 (251)
T 3m19_A 186 ---LFGNQF 191 (251)
T ss_dssp ---CCSCCB
T ss_pred ---eeCCce
Confidence 555543
No 105
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.50 E-value=3e-14 Score=131.82 Aligned_cols=139 Identities=31% Similarity=0.454 Sum_probs=87.8
Q ss_pred EEEEEeCCCCCccccccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCccccccccccccccc-ccCcccccE
Q 007330 194 HSMLVLGRRASFPVSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIPKE-KEKLVHLRY 272 (607)
Q Consensus 194 ~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp~~-~~~l~~L~~ 272 (607)
.+.........++..+ .++++.|+++++. .....+..+..+++|++|+++ ++.++.+|.. +..+++|++
T Consensus 11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~------~n~l~~~~~~~~~~l~~L~~ 80 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI--PAQTTYLDLETNS--LKSLPNGVFDELTSLTQLYLG------GNKLQSLPNGVFNKLTSLTY 80 (208)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSC--CCCCCTTTTTTCTTCSEEECC------SSCCCCCCTTTTTTCTTCCE
T ss_pred EEEecCCCccCCCCCC--CCCCcEEEcCCCc--cCcCChhhhcccccCcEEECC------CCccCccChhhcCCCCCcCE
Confidence 3444444444444333 3577777777775 334445556677777777777 6666666543 567777777
Q ss_pred EecCCCCcccCchh-hhcCCcccEeecCCCCCccccccc-cccccCcccccccccccccCcCC-CCCCCCCCcc
Q 007330 273 LKLSLLMREELPDI-VCELFNLQTLEVEHCPRLKRLPQG-IGKLVNLRHLIYYYSNLDYMPKG-FERLTCLRTL 343 (607)
Q Consensus 273 L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~~~~~~l~~lp~~-i~~l~~L~~L 343 (607)
|++++|.+..+|.. ++++++|++|++++|. +..+|.. +..+++|++|+++.|.+..+|.. +..+++|+.|
T Consensus 81 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 153 (208)
T 2o6s_A 81 LNLSTNQLQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI 153 (208)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred EECCCCcCCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEE
Confidence 77777777777654 5677777777777776 6666544 56777777777777777666553 3444444433
No 106
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.49 E-value=8.5e-14 Score=127.47 Aligned_cols=148 Identities=14% Similarity=0.172 Sum_probs=121.7
Q ss_pred cCceeEEEEEeCCCCCccccccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCccccccccccc-ccccccCc
Q 007330 189 LEKFRHSMLVLGRRASFPVSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYA-IPKEKEKL 267 (607)
Q Consensus 189 ~~~~r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~-lp~~~~~l 267 (607)
..+++++.+.++.+..++ .+..+++|++|++++|. ... ++ .+..+++|++|+++ ++.+.. .|..++.+
T Consensus 43 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~--~~~-~~-~l~~l~~L~~L~l~------~n~l~~~~~~~l~~l 111 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIH--ATN-YN-PISGLSNLERLRIM------GKDVTSDKIPNLSGL 111 (197)
T ss_dssp HHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCC--CSC-CG-GGTTCTTCCEEEEE------CTTCBGGGSCCCTTC
T ss_pred cCCccEEeccCCCccChH-HHhcCCCCCEEEccCCC--CCc-ch-hhhcCCCCCEEEeE------CCccCcccChhhcCC
Confidence 457899999999888766 78889999999999985 222 33 47889999999999 777765 57889999
Q ss_pred ccccEEecCCCCccc-CchhhhcCCcccEeecCCCCCccccccccccccCcccccccccccccCcCCCCCCCCCCccCcE
Q 007330 268 VHLRYLKLSLLMREE-LPDIVCELFNLQTLEVEHCPRLKRLPQGIGKLVNLRHLIYYYSNLDYMPKGFERLTCLRTLTEF 346 (607)
Q Consensus 268 ~~L~~L~L~~~~i~~-lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~l~~lp~~i~~l~~L~~L~~~ 346 (607)
++|++|++++|.+.. .|..++++++|++|++++|..++.+| .+..+++|++|+++.|.+..++ .+..+++|+.|.
T Consensus 112 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~-- 187 (197)
T 4ezg_A 112 TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLY-- 187 (197)
T ss_dssp TTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEE--
T ss_pred CCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEE--
Confidence 999999999999875 67779999999999999997688887 7999999999999999998876 556666665554
Q ss_pred EecCCc
Q 007330 347 VVSGGK 352 (607)
Q Consensus 347 ~~~~~~ 352 (607)
++++.
T Consensus 188 -l~~N~ 192 (197)
T 4ezg_A 188 -AFSQT 192 (197)
T ss_dssp -ECBC-
T ss_pred -eeCcc
Confidence 76665
No 107
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.49 E-value=1e-13 Score=146.80 Aligned_cols=118 Identities=19% Similarity=0.258 Sum_probs=69.0
Q ss_pred ceeEEEEEeCCCCCccccccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccccccccccCcccc
Q 007330 191 KFRHSMLVLGRRASFPVSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIPKEKEKLVHL 270 (607)
Q Consensus 191 ~~r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp~~~~~l~~L 270 (607)
+++.+.+.++.+..++..+ .++|+.|++++|. +.. ++ ..+++|++|+++ +|.++.+|. ++. +|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~--l~~-ip---~~l~~L~~L~Ls------~N~l~~ip~-l~~--~L 122 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNA--LIS-LP---ELPASLEYLDAC------DNRLSTLPE-LPA--SL 122 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSC--CSC-CC---CCCTTCCEEECC------SSCCSCCCC-CCT--TC
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCC--Ccc-cc---cccCCCCEEEcc------CCCCCCcch-hhc--CC
Confidence 4566666666665544433 2566666666664 222 22 335666666666 555655655 443 66
Q ss_pred cEEecCCCCcccCchhhhcCCcccEeecCCCCCccccccccccccCcccccccccccccCcC
Q 007330 271 RYLKLSLLMREELPDIVCELFNLQTLEVEHCPRLKRLPQGIGKLVNLRHLIYYYSNLDYMPK 332 (607)
Q Consensus 271 ~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~l~~lp~ 332 (607)
++|++++|.++.+|. .+++|++|++++|. ++.+|. .+++|++|+++.|.+..+|.
T Consensus 123 ~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~L~~lp~ 177 (571)
T 3cvr_A 123 KHLDVDNNQLTMLPE---LPALLEYINADNNQ-LTMLPE---LPTSLEVLSVRNNQLTFLPE 177 (571)
T ss_dssp CEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCSCCCC
T ss_pred CEEECCCCcCCCCCC---cCccccEEeCCCCc-cCcCCC---cCCCcCEEECCCCCCCCcch
Confidence 666666666666665 46666666666665 555654 45566666666666666655
No 108
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.49 E-value=4e-14 Score=129.64 Aligned_cols=151 Identities=18% Similarity=0.192 Sum_probs=82.9
Q ss_pred cCcccccEEecCCCCcccCchhhhcCCcccEeecCCCCCccccccccccccCccccccccccccc-CcCCCCCCCCCCcc
Q 007330 265 EKLVHLRYLKLSLLMREELPDIVCELFNLQTLEVEHCPRLKRLPQGIGKLVNLRHLIYYYSNLDY-MPKGFERLTCLRTL 343 (607)
Q Consensus 265 ~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~l~~-lp~~i~~l~~L~~L 343 (607)
+.+++|++|++++|.+..+| .+..+++|++|++++|. +..++ .+..+++|++|+++.|.+.. .|..++.+++|+.|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~-~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIH-ATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCC-CSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCC-CCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 44556666666666666665 46666666666666663 54443 55666666666666555543 33444444433333
Q ss_pred CcEEecCCccCCCcccccccccccccCceEEEeccCCCCCHhHHHHHHhcCCCCCcceEEEecCCCCCchhcHHHHhhcC
Q 007330 344 TEFVVSGGKYSGKACNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAELEKKRNVVDLGLWFDKDEEGEEADHEEIIEAL 423 (607)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l 423 (607)
. ++++.+. ...+..+
T Consensus 118 ~---Ls~n~i~--------------------------------------------------------------~~~~~~l 132 (197)
T 4ezg_A 118 D---ISHSAHD--------------------------------------------------------------DSILTKI 132 (197)
T ss_dssp E---CCSSBCB--------------------------------------------------------------GGGHHHH
T ss_pred E---ecCCccC--------------------------------------------------------------cHhHHHH
Confidence 2 3332210 0112223
Q ss_pred CCCCCcceEEEeecC-CCCCCChhhhcCCCccEEEEecCCCCCcCCCCCCCCCCCeeEecCCcC
Q 007330 424 KPHSNLVALDILGFK-GKITFPKWIMSLNNLKSLHLRSCEKCEILSPLGKLPSLETLYIAGMSG 486 (607)
Q Consensus 424 ~~~~~L~~L~l~~~~-~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 486 (607)
..+++|+.|++++|. ... +| .+..+++|+.|++++|.. ..++.+..+++|++|++++|++
T Consensus 133 ~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i-~~~~~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 133 NTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGV-HDYRGIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp TTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCC-CCCTTGGGCSSCCEEEECBC--
T ss_pred hhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCC-cChHHhccCCCCCEEEeeCccc
Confidence 345566666666665 333 54 466777777777777743 3344666777777777777653
No 109
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.48 E-value=2e-14 Score=155.26 Aligned_cols=138 Identities=14% Similarity=0.072 Sum_probs=110.4
Q ss_pred cchHHHHHHHHhcCCChHHHHHHHHHhhccCCChhHHHHHHhccccccc----C----cCCCCchHHHHhcccCCChhhH
Q 007330 14 RKLLYESSKVQQGGVGIKTILHKFGNLLCLRRARKERGSSILDIEMGKL----N----ELENDPLAPLLLSYNDFPPMIK 85 (607)
Q Consensus 14 ~~~~~~~~~i~~~c~GlPLal~~~g~~L~~~~~~~~W~~~~~~~~~~~l----~----~~~~~i~~~L~~SYd~L~~~~k 85 (607)
++..+.+.+|+++|+|+||||+.+|+.|+.+. ..| +..++.+.... . .....+..++..||+.||++.|
T Consensus 304 ~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w-~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~ 380 (591)
T 1z6t_A 304 ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRW-EYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIK 380 (591)
T ss_dssp GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCH-HHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTH
T ss_pred ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhH-HHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHH
Confidence 34567899999999999999999999999873 478 66654432211 1 1113588999999999999999
Q ss_pred HHhhhhcccCCCceeChhHHHHHHHHcCCcccCCCCcHHHHHHHHHHHHHHcCCCcccccCCCCCeeEEEECHHHHHHHH
Q 007330 86 LCFLYCAVFPKGYNIEKDELIKLWMAQGYIRPIGNKEMEVIGQEYFDYLATRSFFQKFDKDDEDNVTRCKMSDAVHDFAQ 165 (607)
Q Consensus 86 ~cfL~~s~fp~~~~i~~~~Li~~wi~~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mhdli~~~~~ 165 (607)
.||+++|+||+|+.|+.+.+...|.++ .+.+..++.+|++++|++.... +...+|+||+++|++++
T Consensus 381 ~~l~~la~f~~~~~i~~~~l~~l~~~~-----------~~~~~~~l~~L~~~~Ll~~~~~---~~~~~~~~H~lv~~~~~ 446 (591)
T 1z6t_A 381 DYYTDLSILQKDVKVPTKVLCILWDME-----------TEEVEDILQEFVNKSLLFCDRN---GKSFRYYLHDLQVDFLT 446 (591)
T ss_dssp HHHHHGGGCCTTCCEEHHHHHHHHTCC-----------HHHHHHHHHHHHHTTSSEEEEE---TTEEEEECCHHHHHHHH
T ss_pred HHHHHccccCCCCccCHHHHHHHhccC-----------HHHHHHHHHHHHhCcCeEEecC---CCccEEEEcHHHHHHHH
Confidence 999999999999999999999999643 2347889999999999986432 33457999999999998
Q ss_pred Hhh
Q 007330 166 FLT 168 (607)
Q Consensus 166 ~~~ 168 (607)
...
T Consensus 447 ~~~ 449 (591)
T 1z6t_A 447 EKN 449 (591)
T ss_dssp HHT
T ss_pred hhh
Confidence 773
No 110
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.48 E-value=1.8e-14 Score=145.60 Aligned_cols=235 Identities=12% Similarity=0.061 Sum_probs=137.6
Q ss_pred ccCCCCeeEEEeeccchhhhhhh----hhhhccCC-ceeEEEecCcccccccccccc-cccccCc-----ccccEEecCC
Q 007330 209 IFKAKKLRSLLIHSEFEVSFHVL----QGLFDYLT-CLRALKITGKVSWGQNSIYAI-PKEKEKL-----VHLRYLKLSL 277 (607)
Q Consensus 209 ~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~l~-~L~~L~L~~~~~~~~~~l~~l-p~~~~~l-----~~L~~L~L~~ 277 (607)
....++|+.|++++|. ..... ...+..++ +|++|+++ ++.+... +..+..+ ++|++|++++
T Consensus 18 ~~~~~~L~~L~Ls~n~--l~~~~~~~l~~~l~~~~~~L~~L~Ls------~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 89 (362)
T 3goz_A 18 TSIPHGVTSLDLSLNN--LYSISTVELIQAFANTPASVTSLNLS------GNSLGFKNSDELVQILAAIPANVTSLNLSG 89 (362)
T ss_dssp HTSCTTCCEEECTTSC--GGGSCHHHHHHHHHTCCTTCCEEECC------SSCGGGSCHHHHHHHHHTSCTTCCEEECCS
T ss_pred HhCCCCceEEEccCCC--CChHHHHHHHHHHHhCCCceeEEECc------CCCCCHHHHHHHHHHHhccCCCccEEECcC
Confidence 3344559999999987 32222 25577888 89999999 6676654 4445554 8999999999
Q ss_pred CCcccCchh-----hhcC-CcccEeecCCCCCcccccc-cc----cc-ccCccccccccccccc-----CcCCCCCCC-C
Q 007330 278 LMREELPDI-----VCEL-FNLQTLEVEHCPRLKRLPQ-GI----GK-LVNLRHLIYYYSNLDY-----MPKGFERLT-C 339 (607)
Q Consensus 278 ~~i~~lp~~-----i~~L-~~L~~L~L~~~~~l~~lp~-~i----~~-l~~L~~L~~~~~~l~~-----lp~~i~~l~-~ 339 (607)
|.++..+.. +..+ ++|++|++++|. ++..+. .+ .. .++|++|++++|.+.. ++..+..+. +
T Consensus 90 n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 168 (362)
T 3goz_A 90 NFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPAN 168 (362)
T ss_dssp SCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTT
T ss_pred CcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCcc
Confidence 998766543 4455 899999999998 665543 22 33 3689999988887763 223233332 4
Q ss_pred CCccCcEEecCCccCCCcccccccccccccCceEEEeccCCCCCHhHHHHHHhcCC-CCCcceEEEecCCCCCchhcHHH
Q 007330 340 LRTLTEFVVSGGKYSGKACNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAELEKK-RNVVDLGLWFDKDEEGEEADHEE 418 (607)
Q Consensus 340 L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~ 418 (607)
|+.|. ++++.+.. .........+... ++|+.|++++|..... ....
T Consensus 169 L~~L~---Ls~n~l~~---------------------------~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~---~~~~ 215 (362)
T 3goz_A 169 VNSLN---LRGNNLAS---------------------------KNCAELAKFLASIPASVTSLDLSANLLGLK---SYAE 215 (362)
T ss_dssp CCEEE---CTTSCGGG---------------------------SCHHHHHHHHHTSCTTCCEEECTTSCGGGS---CHHH
T ss_pred ccEee---ecCCCCch---------------------------hhHHHHHHHHHhCCCCCCEEECCCCCCChh---HHHH
Confidence 44443 55443211 0112222334444 3677777776654221 1222
Q ss_pred HhhcCCC-CCCcceEEEeecCCCCCCC----hhhhcCCCccEEEEecCCCCC--------cCCCCCCCCCCCeeEecCCc
Q 007330 419 IIEALKP-HSNLVALDILGFKGKITFP----KWIMSLNNLKSLHLRSCEKCE--------ILSPLGKLPSLETLYIAGMS 485 (607)
Q Consensus 419 ~~~~l~~-~~~L~~L~l~~~~~~~~lp----~~l~~l~~L~~L~L~~~~~~~--------~~~~l~~l~~L~~L~L~~~~ 485 (607)
++..+.. .++|+.|++++|.+...-+ ..+..+++|+.|+|++|.... ....+..+++|+.|++++|.
T Consensus 216 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 216 LAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 3444433 3467777777776655211 122355667777777664111 12234556666666666665
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.46 E-value=1.7e-13 Score=128.57 Aligned_cols=149 Identities=28% Similarity=0.394 Sum_probs=120.9
Q ss_pred eEEEEEeCCCCCccccccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccccccc-cccCccccc
Q 007330 193 RHSMLVLGRRASFPVSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIPK-EKEKLVHLR 271 (607)
Q Consensus 193 r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp~-~~~~l~~L~ 271 (607)
..+...+..+..+|..+ .++|+.|++++|. +....+..|..+++|++|+|+ ++.+..+|. .+..+++|+
T Consensus 22 ~~v~c~~~~l~~ip~~~--~~~L~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~L~------~N~l~~i~~~~~~~l~~L~ 91 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGI--PTNAQILYLHDNQ--ITKLEPGVFDSLINLKELYLG------SNQLGALPVGVFDSLTQLT 91 (229)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCSEEECCSSC--CCCCCTTTTTTCTTCCEEECC------SSCCCCCCTTTTTTCTTCC
T ss_pred CEeEccCCCcCccCCCC--CCCCCEEEcCCCc--cCccCHHHhhCccCCcEEECC------CCCCCCcChhhcccCCCcC
Confidence 34555556666666554 3899999999997 445556678899999999999 888888874 468999999
Q ss_pred EEecCCCCcccCchh-hhcCCcccEeecCCCCCccccccccccccCcccccccccccccCcCC-CCCCCCCCccCcEEec
Q 007330 272 YLKLSLLMREELPDI-VCELFNLQTLEVEHCPRLKRLPQGIGKLVNLRHLIYYYSNLDYMPKG-FERLTCLRTLTEFVVS 349 (607)
Q Consensus 272 ~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~l~~lp~~-i~~l~~L~~L~~~~~~ 349 (607)
+|+|++|.+..+|.. +..+++|++|+|++|. +..+|..+..+++|++|+++.|.+..+|.. +..+++|+.| .+.
T Consensus 92 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L---~l~ 167 (229)
T 3e6j_A 92 VLDLGTNQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHA---YLF 167 (229)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE---ECT
T ss_pred EEECCCCcCCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEE---Eee
Confidence 999999999999876 6899999999999998 889999999999999999999999988864 5555555554 488
Q ss_pred CCccCC
Q 007330 350 GGKYSG 355 (607)
Q Consensus 350 ~~~~~~ 355 (607)
++.+..
T Consensus 168 ~N~~~c 173 (229)
T 3e6j_A 168 GNPWDC 173 (229)
T ss_dssp TSCBCT
T ss_pred CCCccC
Confidence 877543
No 112
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.45 E-value=2e-14 Score=157.82 Aligned_cols=158 Identities=21% Similarity=0.231 Sum_probs=101.3
Q ss_pred cCceeEEEEEeCCCCCccccccCCCCeeEEEeeccch--hhhhhhhhhhccCCceeEEEecCcccccccccccccccccC
Q 007330 189 LEKFRHSMLVLGRRASFPVSIFKAKKLRSLLIHSEFE--VSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIPKEKEK 266 (607)
Q Consensus 189 ~~~~r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp~~~~~ 266 (607)
...++++.+..+.....+........|+.+.+..... .....++..+..++.|++|+|+ ++.+..+|..+..
T Consensus 172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls------~n~l~~l~~~~~~ 245 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLS------NLQIFNISANIFK 245 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECT------TSCCSCCCGGGGG
T ss_pred CCccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECC------CCCCCCCChhhcC
Confidence 4567888887777765555555555555555433210 0112356678899999999999 8889999989999
Q ss_pred cccccEEecCCCCcccCchhhhcCCcccEeecCCCCCccccccccccccCcccccccccccccCcCCCCCCCCCCccCcE
Q 007330 267 LVHLRYLKLSLLMREELPDIVCELFNLQTLEVEHCPRLKRLPQGIGKLVNLRHLIYYYSNLDYMPKGFERLTCLRTLTEF 346 (607)
Q Consensus 267 l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~l~~lp~~i~~l~~L~~L~~~ 346 (607)
+++|++|+|++|.+..+|..+++|++|++|+|++|. +..+|..++.|++|++|+++.|.+..+|..++.+++|+.|.
T Consensus 246 l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~-- 322 (727)
T 4b8c_D 246 YDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLG-- 322 (727)
T ss_dssp CCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEE--
T ss_pred CCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEe--
Confidence 999999999999999999999999999999999998 88999999999999999999999999999888888777776
Q ss_pred EecCCccCCC
Q 007330 347 VVSGGKYSGK 356 (607)
Q Consensus 347 ~~~~~~~~~~ 356 (607)
+++|.+.+.
T Consensus 323 -L~~N~l~~~ 331 (727)
T 4b8c_D 323 -VEGNPLEKQ 331 (727)
T ss_dssp -CTTSCCCSH
T ss_pred -CCCCccCCC
Confidence 888876543
No 113
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.45 E-value=9.2e-13 Score=121.74 Aligned_cols=76 Identities=26% Similarity=0.339 Sum_probs=52.4
Q ss_pred ccccccccccccCcccccEEecCCCCcccCchh-hhcCCcccEeecCCCCCccccccc-cccccCcccccccccccccCc
Q 007330 254 QNSIYAIPKEKEKLVHLRYLKLSLLMREELPDI-VCELFNLQTLEVEHCPRLKRLPQG-IGKLVNLRHLIYYYSNLDYMP 331 (607)
Q Consensus 254 ~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~~~~~~l~~lp 331 (607)
++.+..+|..+ ..+|++|++++|.+..+|.. +.++++|++|++++|. ++.+|.. +..+++|++|+++.|.+..+|
T Consensus 16 ~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 92 (208)
T 2o6s_A 16 SQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92 (208)
T ss_dssp SSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCCcCCccC
Confidence 56666676544 45788888888887777664 5677888888888776 6666554 467777777777776665554
Q ss_pred C
Q 007330 332 K 332 (607)
Q Consensus 332 ~ 332 (607)
.
T Consensus 93 ~ 93 (208)
T 2o6s_A 93 N 93 (208)
T ss_dssp T
T ss_pred H
Confidence 4
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.45 E-value=2.2e-15 Score=160.38 Aligned_cols=119 Identities=16% Similarity=0.134 Sum_probs=76.3
Q ss_pred CcceEEEeecCCCCCCChhhhcCCCccEEEEecCCCCCcCCCCCCCCCCCeeEecCCcCeeeCccccCCCCCCccCCCcc
Q 007330 428 NLVALDILGFKGKITFPKWIMSLNNLKSLHLRSCEKCEILSPLGKLPSLETLYIAGMSGKRVGDEFFGIGSDCNIAFPKL 507 (607)
Q Consensus 428 ~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~L 507 (607)
.|+.|++++|.+.+ +|. +..+++|+.|+|++|.....+..++.+++|+.|+|++|.++.+| . + ..+++|
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~-l-------~~l~~L 510 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-G-V-------ANLPRL 510 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-G-G-------TTCSSC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-c-c-------CCCCCC
Confidence 46677777776666 665 67777777777777755544445667777777777777766555 2 1 256777
Q ss_pred ceeeeccccccccc--cccccccCcccccccCCccceeeeecccCccccCCCCC----CCCCcCeEE
Q 007330 508 KFLRVVDMFEWEEW--GFGITRSNVKEDVMVMPCLNYLDIQFCFKLKALPGYLL----EITALEKLE 568 (607)
Q Consensus 508 ~~L~l~~~~~l~~~--~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~----~l~~L~~L~ 568 (607)
+.|+++++ .+..+ +.. +..+++|+.|++++| .+..+|.... .+++|+.|+
T Consensus 511 ~~L~Ls~N-~l~~~~~p~~---------l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 511 QELLLCNN-RLQQSAAIQP---------LVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CEEECCSS-CCCSSSTTGG---------GGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEE
T ss_pred cEEECCCC-CCCCCCCcHH---------HhcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccC
Confidence 77777775 34433 333 667788888888875 4666654332 256777764
No 115
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.44 E-value=7.3e-13 Score=123.38 Aligned_cols=83 Identities=16% Similarity=0.313 Sum_probs=64.8
Q ss_pred eEEEecCcccccccccccccccccCcccccEEecCCCCcccCch-hhhcCCcccEeecCCCCCcccc-ccccccccCccc
Q 007330 242 RALKITGKVSWGQNSIYAIPKEKEKLVHLRYLKLSLLMREELPD-IVCELFNLQTLEVEHCPRLKRL-PQGIGKLVNLRH 319 (607)
Q Consensus 242 ~~L~L~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~ 319 (607)
+.++++ ++.++.+|..+. .+|+.|++++|.+..+|. .+..+++|++|+|++|. +..+ |..+..+++|++
T Consensus 14 ~~v~c~------~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~ 84 (220)
T 2v9t_B 14 NIVDCR------GKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNS 84 (220)
T ss_dssp TEEECT------TSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC-CCEECTTTTTTCSSCCE
T ss_pred CEEEcC------CCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc-CCCcCHHHhhCCcCCCE
Confidence 467777 777888887664 688888998888888876 57888888888888887 6555 667888888888
Q ss_pred ccccccccccCcCC
Q 007330 320 LIYYYSNLDYMPKG 333 (607)
Q Consensus 320 L~~~~~~l~~lp~~ 333 (607)
|+++.|.+..+|.+
T Consensus 85 L~Ls~N~l~~l~~~ 98 (220)
T 2v9t_B 85 LVLYGNKITELPKS 98 (220)
T ss_dssp EECCSSCCCCCCTT
T ss_pred EECCCCcCCccCHh
Confidence 88888877776654
No 116
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.44 E-value=1.4e-13 Score=122.46 Aligned_cols=132 Identities=20% Similarity=0.176 Sum_probs=64.8
Q ss_pred CceeEEEEEeCCCC--CccccccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCccccccccccc-ccccccC
Q 007330 190 EKFRHSMLVLGRRA--SFPVSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYA-IPKEKEK 266 (607)
Q Consensus 190 ~~~r~l~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~-lp~~~~~ 266 (607)
..++++.+.++.+. .++..+..+++|+.|++++|. .... ..+..+++|++|+++ ++.+.. +|..+..
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~--l~~~--~~~~~l~~L~~L~Ls------~N~l~~~~~~~~~~ 93 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG--LISV--SNLPKLPKLKKLELS------ENRIFGGLDMLAEK 93 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC--CCCC--SSCCCCSSCCEEEEE------SCCCCSCCCHHHHH
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC--CCCh--hhhccCCCCCEEECc------CCcCchHHHHHHhh
Confidence 44555555555544 444444455555555555553 2111 234455555555555 444444 3444444
Q ss_pred cccccEEecCCCCcccCc--hhhhcCCcccEeecCCCCCcccccc----ccccccCcccccccccccccCcC
Q 007330 267 LVHLRYLKLSLLMREELP--DIVCELFNLQTLEVEHCPRLKRLPQ----GIGKLVNLRHLIYYYSNLDYMPK 332 (607)
Q Consensus 267 l~~L~~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~----~i~~l~~L~~L~~~~~~l~~lp~ 332 (607)
+++|++|++++|.+..+| ..+..+++|++|++++|. +..+|. .+..+++|++|+++.+.+.++|.
T Consensus 94 l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 94 LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp CTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred CCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 555555555555555544 345555555555555554 444443 34555555555555544444443
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.43 E-value=4.6e-16 Score=165.62 Aligned_cols=205 Identities=15% Similarity=0.070 Sum_probs=122.8
Q ss_pred cCcccccEEecCCCCcccCchhhhcCCcccEeecCCCC-------------CccccccccccccCccccc-ccccccccC
Q 007330 265 EKLVHLRYLKLSLLMREELPDIVCELFNLQTLEVEHCP-------------RLKRLPQGIGKLVNLRHLI-YYYSNLDYM 330 (607)
Q Consensus 265 ~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~-------------~l~~lp~~i~~l~~L~~L~-~~~~~l~~l 330 (607)
..+++|+.|+|++|.++.+|+++++|++|+.|++++|. .....|..++.+++|+.|+ ++++.+..+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 56788888888888888888888888888888887663 3445677788899999998 776654433
Q ss_pred cCCCCCCCCCCccCcEEecCCccCCCcccccccccccccCceEEEeccCCCCCHhHHHHHHhcCCCCCcceEEEecCCCC
Q 007330 331 PKGFERLTCLRTLTEFVVSGGKYSGKACNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAELEKKRNVVDLGLWFDKDEE 410 (607)
Q Consensus 331 p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 410 (607)
+. +. +..+.+...+. ..|+.|+++.|...
T Consensus 426 ~~----------l~---l~~n~i~~l~~-------------------------------------~~L~~L~Ls~n~l~- 454 (567)
T 1dce_A 426 RS----------KF---LLENSVLKMEY-------------------------------------ADVRVLHLAHKDLT- 454 (567)
T ss_dssp HH----------HH---HHHHHHHHHHH-------------------------------------TTCSEEECTTSCCS-
T ss_pred hh----------hh---hhcccccccCc-------------------------------------cCceEEEecCCCCC-
Confidence 21 11 11222000000 01222233222221
Q ss_pred CchhcHHHHhhcCCCCCCcceEEEeecCCCCCCChhhhcCCCccEEEEecCCCCCcCCCCCCCCCCCeeEecCCcCeee-
Q 007330 411 GEEADHEEIIEALKPHSNLVALDILGFKGKITFPKWIMSLNNLKSLHLRSCEKCEILSPLGKLPSLETLYIAGMSGKRV- 489 (607)
Q Consensus 411 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~- 489 (607)
.++. ++.+++|+.|++++|.+.. +|..++.+++|+.|+|++|.... +|.++.+++|+.|+|++|.++.+
T Consensus 455 -------~lp~-~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~Ls~N~l~~-lp~l~~l~~L~~L~Ls~N~l~~~~ 524 (567)
T 1dce_A 455 -------VLCH-LEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALEN-VDGVANLPRLQELLLCNNRLQQSA 524 (567)
T ss_dssp -------SCCC-GGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCC-CGGGTTCSSCCEEECCSSCCCSSS
T ss_pred -------CCcC-ccccccCcEeecCcccccc-cchhhhcCCCCCEEECCCCCCCC-CcccCCCCCCcEEECCCCCCCCCC
Confidence 1111 4455667777777777664 77777777777777777775443 45677777777777777776555
Q ss_pred -CccccCCCCCCccCCCccceeeeccccccccccccccccCcccccccCCccceee
Q 007330 490 -GDEFFGIGSDCNIAFPKLKFLRVVDMFEWEEWGFGITRSNVKEDVMVMPCLNYLD 544 (607)
Q Consensus 490 -~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ 544 (607)
|..+ ..+++|+.|++++++ +...+.. .......+|+|+.|+
T Consensus 525 ~p~~l--------~~l~~L~~L~L~~N~-l~~~~~~-----~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 525 AIQPL--------VSCPRLVLLNLQGNS-LCQEEGI-----QERLAEMLPSVSSIL 566 (567)
T ss_dssp TTGGG--------GGCTTCCEEECTTSG-GGGSSSC-----TTHHHHHCTTCSEEE
T ss_pred CcHHH--------hcCCCCCEEEecCCc-CCCCccH-----HHHHHHHCcccCccC
Confidence 3322 256777777777763 3333211 111133577777775
No 118
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.43 E-value=2.9e-13 Score=126.12 Aligned_cols=146 Identities=22% Similarity=0.274 Sum_probs=116.6
Q ss_pred EEEEEeCCCCCccccccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccccc-cccccCcccccE
Q 007330 194 HSMLVLGRRASFPVSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAI-PKEKEKLVHLRY 272 (607)
Q Consensus 194 ~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~l-p~~~~~l~~L~~ 272 (607)
.+.+.+..+..+|..+. ++++.|++++|. +....+..|..+++|++|+|+ ++.+..+ |..|..+++|++
T Consensus 15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~--i~~i~~~~~~~l~~L~~L~Ls------~N~i~~~~~~~~~~l~~L~~ 84 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNT--IKVIPPGAFSPYKKLRRIDLS------NNQISELAPDAFQGLRSLNS 84 (220)
T ss_dssp EEECTTSCCSSCCSSCC--TTCCEEECCSSC--CCEECTTSSTTCTTCCEEECC------SSCCCEECTTTTTTCSSCCE
T ss_pred EEEcCCCCcCcCCCccC--cCCCEEECCCCc--CCCcCHhHhhCCCCCCEEECC------CCcCCCcCHHHhhCCcCCCE
Confidence 45555556666665543 789999999987 445455568899999999999 8888877 788999999999
Q ss_pred EecCCCCcccCchh-hhcCCcccEeecCCCCCcccc-ccccccccCcccccccccccccCcCC-CCCCCCCCccCcEEec
Q 007330 273 LKLSLLMREELPDI-VCELFNLQTLEVEHCPRLKRL-PQGIGKLVNLRHLIYYYSNLDYMPKG-FERLTCLRTLTEFVVS 349 (607)
Q Consensus 273 L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~~~~~~l~~lp~~-i~~l~~L~~L~~~~~~ 349 (607)
|+|++|.+..+|.. +..+++|++|+|++|. +..+ |..+..+++|++|+++.|.+..++.. +..+++|+.|. ++
T Consensus 85 L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~---L~ 160 (220)
T 2v9t_B 85 LVLYGNKITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMH---LA 160 (220)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE---CC
T ss_pred EECCCCcCCccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEE---eC
Confidence 99999999999877 5889999999999998 6665 56788999999999999999988864 55666665554 77
Q ss_pred CCcc
Q 007330 350 GGKY 353 (607)
Q Consensus 350 ~~~~ 353 (607)
++.+
T Consensus 161 ~N~~ 164 (220)
T 2v9t_B 161 QNPF 164 (220)
T ss_dssp SSCE
T ss_pred CCCc
Confidence 7763
No 119
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.40 E-value=6.5e-13 Score=123.74 Aligned_cols=147 Identities=19% Similarity=0.217 Sum_probs=116.9
Q ss_pred eEEEEEeCCCCCccccccCCCCeeEEEeeccchhhhhh-hhhhhccCCceeEEEecCcccccccccccccc-cccCcccc
Q 007330 193 RHSMLVLGRRASFPVSIFKAKKLRSLLIHSEFEVSFHV-LQGLFDYLTCLRALKITGKVSWGQNSIYAIPK-EKEKLVHL 270 (607)
Q Consensus 193 r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp~-~~~~l~~L 270 (607)
+.+.+.++.+..+|..+ .+.++.|++++|. +... ....|..+++|++|+++ ++.++.++. .++.+++|
T Consensus 14 ~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~--l~~~~~~~~~~~l~~L~~L~L~------~N~i~~i~~~~~~~l~~L 83 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI--PQYTAELRLNNNE--FTVLEATGIFKKLPQLRKINFS------NNKITDIEEGAFEGASGV 83 (220)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSC--CCEECCCCCGGGCTTCCEEECC------SSCCCEECTTTTTTCTTC
T ss_pred CEeEeCCCCcccCccCC--CCCCCEEEcCCCc--CCccCchhhhccCCCCCEEECC------CCcCCEECHHHhCCCCCC
Confidence 46777777777766654 3567899999986 3333 23457899999999999 888888854 78999999
Q ss_pred cEEecCCCCcccCchh-hhcCCcccEeecCCCCCcccc-ccccccccCcccccccccccccC-cCCCCCCCCCCccCcEE
Q 007330 271 RYLKLSLLMREELPDI-VCELFNLQTLEVEHCPRLKRL-PQGIGKLVNLRHLIYYYSNLDYM-PKGFERLTCLRTLTEFV 347 (607)
Q Consensus 271 ~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~~~~~~l~~l-p~~i~~l~~L~~L~~~~ 347 (607)
++|+|++|.+..+|.. +.++++|++|+|++|. +..+ |..+..+++|++|+++.|.+..+ |..+..+++|+.|.
T Consensus 84 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~--- 159 (220)
T 2v70_A 84 NEILLTSNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLN--- 159 (220)
T ss_dssp CEEECCSSCCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEE---
T ss_pred CEEECCCCccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEE---
Confidence 9999999999888765 8899999999999998 6655 67789999999999999999887 55677776666654
Q ss_pred ecCCcc
Q 007330 348 VSGGKY 353 (607)
Q Consensus 348 ~~~~~~ 353 (607)
++++.+
T Consensus 160 L~~N~l 165 (220)
T 2v70_A 160 LLANPF 165 (220)
T ss_dssp CCSCCE
T ss_pred ecCcCC
Confidence 777764
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.39 E-value=5.9e-13 Score=118.43 Aligned_cols=130 Identities=22% Similarity=0.217 Sum_probs=109.7
Q ss_pred cCCCCeeEEEeeccchhhh-hhhhhhhccCCceeEEEecCcccccccccccccccccCcccccEEecCCCCccc-Cchhh
Q 007330 210 FKAKKLRSLLIHSEFEVSF-HVLQGLFDYLTCLRALKITGKVSWGQNSIYAIPKEKEKLVHLRYLKLSLLMREE-LPDIV 287 (607)
Q Consensus 210 ~~~~~L~~L~l~~~~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~-lp~~i 287 (607)
...++|+.|++++|. .. ..++..+..+++|++|+++ ++.+..+ ..++.+++|++|++++|.+.. +|..+
T Consensus 21 ~~~~~L~~L~l~~n~--l~~~~i~~~~~~l~~L~~L~l~------~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 91 (168)
T 2ell_A 21 RTPAAVRELVLDNCK--SNDGKIEGLTAEFVNLEFLSLI------NVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLA 91 (168)
T ss_dssp SCTTSCSEEECCSCB--CBTTBCSSCCGGGGGCCEEEEE------SSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHH
T ss_pred CCcccCCEEECCCCC--CChhhHHHHHHhCCCCCEEeCc------CCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHH
Confidence 345889999999986 32 2355657899999999999 7778777 788899999999999999888 77778
Q ss_pred hcCCcccEeecCCCCCccccc--cccccccCcccccccccccccCcC----CCCCCCCCCccCcEEec
Q 007330 288 CELFNLQTLEVEHCPRLKRLP--QGIGKLVNLRHLIYYYSNLDYMPK----GFERLTCLRTLTEFVVS 349 (607)
Q Consensus 288 ~~L~~L~~L~L~~~~~l~~lp--~~i~~l~~L~~L~~~~~~l~~lp~----~i~~l~~L~~L~~~~~~ 349 (607)
.++++|++|++++|. ++.+| ..+..+++|++|+++.|.+..+|. .+..+++|+.|......
T Consensus 92 ~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 92 EKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp HHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred hhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 889999999999997 88876 688999999999999999998887 68888999988854443
No 121
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.37 E-value=1e-12 Score=132.41 Aligned_cols=170 Identities=22% Similarity=0.179 Sum_probs=113.5
Q ss_pred eEEEecCcccccccccccccccccCcccccEEecCCCCcccCchh-hh-cCCcccEeecCCCCCcccccc-ccccccCcc
Q 007330 242 RALKITGKVSWGQNSIYAIPKEKEKLVHLRYLKLSLLMREELPDI-VC-ELFNLQTLEVEHCPRLKRLPQ-GIGKLVNLR 318 (607)
Q Consensus 242 ~~L~L~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~-i~-~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~ 318 (607)
++++++ ++.++.+|..+. ..+++|+|++|.+..+|.. +. ++++|++|+|++|. +..+|. .+..+++|+
T Consensus 21 ~~l~c~------~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~ 91 (361)
T 2xot_A 21 NILSCS------KQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLR 91 (361)
T ss_dssp TEEECC------SSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCC
T ss_pred CEEEeC------CCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCC
Confidence 567777 777888887654 4688888888888888765 44 78888888888887 776663 578888888
Q ss_pred cccccccccccCcCC-CCCCCCCCccCcEEecCCccCCCcccccccccccccCceEEEeccCCCCCHhHHHHHHhcCCCC
Q 007330 319 HLIYYYSNLDYMPKG-FERLTCLRTLTEFVVSGGKYSGKACNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAELEKKRN 397 (607)
Q Consensus 319 ~L~~~~~~l~~lp~~-i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~ 397 (607)
+|+++.|.+..+|.. +..+++|+.|. ++++.+...
T Consensus 92 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~---L~~N~i~~~----------------------------------------- 127 (361)
T 2xot_A 92 YLDLSSNHLHTLDEFLFSDLQALEVLL---LYNNHIVVV----------------------------------------- 127 (361)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEE---CCSSCCCEE-----------------------------------------
T ss_pred EEECCCCcCCcCCHHHhCCCcCCCEEE---CCCCcccEE-----------------------------------------
Confidence 888888888777653 44455444443 444431100
Q ss_pred CcceEEEecCCCCCchhcHHHHhhcCCCCCCcceEEEeecCCCCCCChhh----hcCCCccEEEEecCCCCCcCC-CCCC
Q 007330 398 VVDLGLWFDKDEEGEEADHEEIIEALKPHSNLVALDILGFKGKITFPKWI----MSLNNLKSLHLRSCEKCEILS-PLGK 472 (607)
Q Consensus 398 L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~l----~~l~~L~~L~L~~~~~~~~~~-~l~~ 472 (607)
.+..+..+++|+.|++++|.+.. +|..+ ..+++|+.|+|++|.....++ .+..
T Consensus 128 ---------------------~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~ 185 (361)
T 2xot_A 128 ---------------------DRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQK 185 (361)
T ss_dssp ---------------------CTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEECCSSCCCCCCHHHHHH
T ss_pred ---------------------CHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhh
Confidence 01234566788888888888877 77665 467888888888885433221 2445
Q ss_pred CCC--CCeeEecCCcC
Q 007330 473 LPS--LETLYIAGMSG 486 (607)
Q Consensus 473 l~~--L~~L~L~~~~~ 486 (607)
+++ |+.|+|.+|++
T Consensus 186 l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 186 LPAWVKNGLYLHNNPL 201 (361)
T ss_dssp SCHHHHTTEECCSSCE
T ss_pred ccHhhcceEEecCCCc
Confidence 555 47788887763
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.35 E-value=3.9e-13 Score=116.99 Aligned_cols=123 Identities=24% Similarity=0.257 Sum_probs=77.8
Q ss_pred CCCeeEEEeeccchhhh-hhhhhhhccCCceeEEEecCcccccccccccccccccCcccccEEecCCCCccc-Cchhhhc
Q 007330 212 AKKLRSLLIHSEFEVSF-HVLQGLFDYLTCLRALKITGKVSWGQNSIYAIPKEKEKLVHLRYLKLSLLMREE-LPDIVCE 289 (607)
Q Consensus 212 ~~~L~~L~l~~~~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~-lp~~i~~ 289 (607)
.++++.|++++|. .. ..++..+..+++|++|+++ ++.+..+ ..++.+++|++|++++|.+.. +|..+++
T Consensus 16 ~~~l~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~l~------~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~ 86 (149)
T 2je0_A 16 PSDVKELVLDNSR--SNEGKLEGLTDEFEELEFLSTI------NVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEK 86 (149)
T ss_dssp GGGCSEEECTTCB--CBTTBCCSCCTTCTTCCEEECT------TSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHH
T ss_pred CccCeEEEccCCc--CChhHHHHHHhhcCCCcEEECc------CCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhh
Confidence 3556666666664 22 1234445666777777777 5566555 556667777777777777666 6665666
Q ss_pred CCcccEeecCCCCCccccc--cccccccCcccccccccccccCcC----CCCCCCCCCccC
Q 007330 290 LFNLQTLEVEHCPRLKRLP--QGIGKLVNLRHLIYYYSNLDYMPK----GFERLTCLRTLT 344 (607)
Q Consensus 290 L~~L~~L~L~~~~~l~~lp--~~i~~l~~L~~L~~~~~~l~~lp~----~i~~l~~L~~L~ 344 (607)
+++|++|++++|. ++.+| ..++.+++|++|+++.|.+..+|. .+..+++|+.|+
T Consensus 87 l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~ 146 (149)
T 2je0_A 87 CPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLD 146 (149)
T ss_dssp CTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEET
T ss_pred CCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCccccc
Confidence 7777777777766 55544 566777777777777777766654 355566666554
No 123
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.35 E-value=1.9e-12 Score=121.38 Aligned_cols=131 Identities=24% Similarity=0.310 Sum_probs=115.0
Q ss_pred cCceeEEEEEeCCCCCc-cccccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCccccccccccccccc-ccC
Q 007330 189 LEKFRHSMLVLGRRASF-PVSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIPKE-KEK 266 (607)
Q Consensus 189 ~~~~r~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp~~-~~~ 266 (607)
+.+++.+.+.++.+..+ +..+..+++|+.|++++|. +....+..|..+++|++|+|+ ++.++.+|.. +..
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~--l~~i~~~~~~~l~~L~~L~Ls------~N~l~~l~~~~~~~ 110 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ--LGALPVGVFDSLTQLTVLDLG------TNQLTVLPSAVFDR 110 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECC------SSCCCCCCTTTTTT
T ss_pred CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC--CCCcChhhcccCCCcCEEECC------CCcCCccChhHhCc
Confidence 57899999999998876 5668899999999999997 455556668899999999999 8889888654 689
Q ss_pred cccccEEecCCCCcccCchhhhcCCcccEeecCCCCCcccccc-ccccccCcccccccccccc
Q 007330 267 LVHLRYLKLSLLMREELPDIVCELFNLQTLEVEHCPRLKRLPQ-GIGKLVNLRHLIYYYSNLD 328 (607)
Q Consensus 267 l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~~~~~~l~ 328 (607)
+++|++|++++|.+..+|..+.++++|++|+|++|. +..+|. .+..+++|+.|+++.|.+.
T Consensus 111 l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 111 LVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred chhhCeEeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 999999999999999999999999999999999997 888875 4789999999999888765
No 124
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.35 E-value=2.1e-12 Score=123.77 Aligned_cols=145 Identities=19% Similarity=0.157 Sum_probs=109.4
Q ss_pred cCceeEEEEEeCCCCCccccccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccccccccccCcc
Q 007330 189 LEKFRHSMLVLGRRASFPVSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIPKEKEKLV 268 (607)
Q Consensus 189 ~~~~r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp~~~~~l~ 268 (607)
...++.+.+.++.+..++ .+..+++|+.|++++|. ... ++. +..+++|++|+++ ++.++.+|... . .
T Consensus 40 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~--i~~-~~~-l~~l~~L~~L~L~------~N~l~~l~~~~-~-~ 106 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ--ISD-LSP-LKDLTKLEELSVN------RNRLKNLNGIP-S-A 106 (263)
T ss_dssp HTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC--CCC-CGG-GTTCSSCCEEECC------SSCCSCCTTCC-C-S
T ss_pred cCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc--cCC-Chh-hccCCCCCEEECC------CCccCCcCccc-c-C
Confidence 466788888888777754 67788888999888886 333 233 7788888999888 77787776433 3 8
Q ss_pred cccEEecCCCCcccCchhhhcCCcccEeecCCCCCccccccccccccCcccccccccccccCcCCCCCCCCCCccCcEEe
Q 007330 269 HLRYLKLSLLMREELPDIVCELFNLQTLEVEHCPRLKRLPQGIGKLVNLRHLIYYYSNLDYMPKGFERLTCLRTLTEFVV 348 (607)
Q Consensus 269 ~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~l~~lp~~i~~l~~L~~L~~~~~ 348 (607)
+|++|++++|.+..+| .++++++|++|++++|. ++.+| .++.+++|++|+++.|.+..+ ..+..+++|+.|. +
T Consensus 107 ~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~---l 179 (263)
T 1xeu_A 107 CLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWID---L 179 (263)
T ss_dssp SCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEE---E
T ss_pred cccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEe---C
Confidence 8888999888888876 48888889999998887 77776 688888888888888888777 4455566555554 5
Q ss_pred cCCcc
Q 007330 349 SGGKY 353 (607)
Q Consensus 349 ~~~~~ 353 (607)
+++.+
T Consensus 180 ~~N~~ 184 (263)
T 1xeu_A 180 TGQKC 184 (263)
T ss_dssp EEEEE
T ss_pred CCCcc
Confidence 55543
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.33 E-value=1.3e-12 Score=117.21 Aligned_cols=128 Identities=16% Similarity=0.084 Sum_probs=97.7
Q ss_pred ccccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccccccccccCcccccEEecCCCCcccCchh
Q 007330 207 VSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIPKEKEKLVHLRYLKLSLLMREELPDI 286 (607)
Q Consensus 207 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~ 286 (607)
..+..+++|+.|++++|. ... ++......++|++|+++ ++.+..+ ..++.+++|++|++++|.+..+|+.
T Consensus 13 ~~~~~~~~L~~L~l~~n~--l~~-i~~~~~~~~~L~~L~Ls------~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~ 82 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYK--IPV-IENLGATLDQFDAIDFS------DNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEG 82 (176)
T ss_dssp CEEECTTSCEEEECTTSC--CCS-CCCGGGGTTCCSEEECC------SSCCCEE-CCCCCCSSCCEEECCSSCCCEECSC
T ss_pred HhcCCcCCceEEEeeCCC--Cch-hHHhhhcCCCCCEEECC------CCCCCcc-cccccCCCCCEEECCCCcccccCcc
Confidence 345667888888888886 222 34433334488889888 7777777 5788888899999998888888866
Q ss_pred h-hcCCcccEeecCCCCCcccccc--ccccccCcccccccccccccCcCC----CCCCCCCCccCc
Q 007330 287 V-CELFNLQTLEVEHCPRLKRLPQ--GIGKLVNLRHLIYYYSNLDYMPKG----FERLTCLRTLTE 345 (607)
Q Consensus 287 i-~~L~~L~~L~L~~~~~l~~lp~--~i~~l~~L~~L~~~~~~l~~lp~~----i~~l~~L~~L~~ 345 (607)
+ +.+++|++|++++|. ++.+|. .+..+++|++|++++|.+..+|.. +..+++|+.|+.
T Consensus 83 ~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~ 147 (176)
T 1a9n_A 83 LDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF 147 (176)
T ss_dssp HHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred hhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCC
Confidence 5 888889999998887 788876 778888888888888888887764 667777777763
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.31 E-value=1.2e-12 Score=113.97 Aligned_cols=124 Identities=20% Similarity=0.160 Sum_probs=107.5
Q ss_pred cCceeEEEEEeCCCC--CccccccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCccccccccccc-cccccc
Q 007330 189 LEKFRHSMLVLGRRA--SFPVSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYA-IPKEKE 265 (607)
Q Consensus 189 ~~~~r~l~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~-lp~~~~ 265 (607)
+.+++++.+.++.+. .++..+..+++|+.|++++|. .... ..+..+++|++|+++ ++.+.. +|..++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~--l~~~--~~~~~l~~L~~L~Ls------~n~i~~~~~~~~~ 85 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG--LTSI--ANLPKLNKLKKLELS------DNRVSGGLEVLAE 85 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC--CCCC--TTCCCCTTCCEEECC------SSCCCSCTHHHHH
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC--CCCc--hhhhcCCCCCEEECC------CCcccchHHHHhh
Confidence 567899999999887 667778899999999999996 3332 558899999999999 888877 788788
Q ss_pred CcccccEEecCCCCcccCc--hhhhcCCcccEeecCCCCCcccccc----ccccccCccccccc
Q 007330 266 KLVHLRYLKLSLLMREELP--DIVCELFNLQTLEVEHCPRLKRLPQ----GIGKLVNLRHLIYY 323 (607)
Q Consensus 266 ~l~~L~~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~----~i~~l~~L~~L~~~ 323 (607)
.+++|++|++++|.++.+| ..++.+++|++|++++|. +..+|. .++.+++|++|+++
T Consensus 86 ~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 86 KCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred hCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 8999999999999999876 779999999999999997 888876 68899999999864
No 127
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.31 E-value=3.2e-12 Score=119.03 Aligned_cols=131 Identities=15% Similarity=0.106 Sum_probs=112.5
Q ss_pred cCceeEEEEEeCCCCCcc--ccccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccccccc-ccc
Q 007330 189 LEKFRHSMLVLGRRASFP--VSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIPK-EKE 265 (607)
Q Consensus 189 ~~~~r~l~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp~-~~~ 265 (607)
+..++++.+.++.+..++ ..+..+++|+.|++++|. +....+..|..+++|++|+|+ ++.+..+|. .+.
T Consensus 31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~--i~~i~~~~~~~l~~L~~L~Ls------~N~l~~~~~~~~~ 102 (220)
T 2v70_A 31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK--ITDIEEGAFEGASGVNEILLT------SNRLENVQHKMFK 102 (220)
T ss_dssp CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC--CCEECTTTTTTCTTCCEEECC------SSCCCCCCGGGGT
T ss_pred CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc--CCEECHHHhCCCCCCCEEECC------CCccCccCHhHhc
Confidence 556789999999988763 347899999999999997 445556678999999999999 888888854 588
Q ss_pred CcccccEEecCCCCcccC-chhhhcCCcccEeecCCCCCcccc-ccccccccCcccccccccccc
Q 007330 266 KLVHLRYLKLSLLMREEL-PDIVCELFNLQTLEVEHCPRLKRL-PQGIGKLVNLRHLIYYYSNLD 328 (607)
Q Consensus 266 ~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~~~~~~l~ 328 (607)
.+++|++|+|++|.+..+ |..+.++++|++|+|++|. ++.+ |..+..+++|+.|+++.|.+.
T Consensus 103 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 103 GLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp TCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCCc
Confidence 999999999999999888 5668999999999999998 7766 778999999999999988764
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.26 E-value=3.8e-12 Score=114.10 Aligned_cols=129 Identities=20% Similarity=0.109 Sum_probs=109.6
Q ss_pred cCceeEEEEEeCCCCCccccccCC-CCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccccccccc-cC
Q 007330 189 LEKFRHSMLVLGRRASFPVSIFKA-KKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIPKEK-EK 266 (607)
Q Consensus 189 ~~~~r~l~l~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp~~~-~~ 266 (607)
..+++.+.+.++.+..++. +..+ ++|+.|++++|. ... + ..+..+++|++|+++ +|.+..+|..+ +.
T Consensus 18 ~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~--l~~-~-~~l~~l~~L~~L~Ls------~N~l~~~~~~~~~~ 86 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNE--IRK-L-DGFPLLRRLKTLLVN------NNRICRIGEGLDQA 86 (176)
T ss_dssp TTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSC--CCE-E-CCCCCCSSCCEEECC------SSCCCEECSCHHHH
T ss_pred cCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCC--CCc-c-cccccCCCCCEEECC------CCcccccCcchhhc
Confidence 5678999999998887643 4444 499999999997 333 2 448899999999999 88999887655 89
Q ss_pred cccccEEecCCCCcccCch--hhhcCCcccEeecCCCCCccccccc----cccccCccccccccccccc
Q 007330 267 LVHLRYLKLSLLMREELPD--IVCELFNLQTLEVEHCPRLKRLPQG----IGKLVNLRHLIYYYSNLDY 329 (607)
Q Consensus 267 l~~L~~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~~l~~lp~~----i~~l~~L~~L~~~~~~l~~ 329 (607)
+++|++|++++|.+..+|. .++.+++|++|++++|. +..+|.. ++.+++|+.|+++.+...+
T Consensus 87 l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 87 LPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 9999999999999999997 79999999999999998 8888875 8999999999988776643
No 129
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.24 E-value=1.1e-11 Score=125.00 Aligned_cols=152 Identities=17% Similarity=0.149 Sum_probs=103.8
Q ss_pred eEEEEEeCCCCCccccccCCCCeeEEEeeccchhhhhhhhhhhc-cCCceeEEEecCccccccccccccc-ccccCcccc
Q 007330 193 RHSMLVLGRRASFPVSIFKAKKLRSLLIHSEFEVSFHVLQGLFD-YLTCLRALKITGKVSWGQNSIYAIP-KEKEKLVHL 270 (607)
Q Consensus 193 r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~l~~lp-~~~~~l~~L 270 (607)
+.+.+.+..+..+|..+ .+.++.|++++|. +....+..+. .+++|++|+|+ ++.+..++ ..+..+++|
T Consensus 21 ~~l~c~~~~l~~iP~~~--~~~l~~L~Ls~N~--l~~l~~~~~~~~l~~L~~L~L~------~N~i~~i~~~~~~~l~~L 90 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL--PSYTALLDLSHNN--LSRLRAEWTPTRLTNLHSLLLS------HNHLNFISSEAFVPVPNL 90 (361)
T ss_dssp TEEECCSSCCSSCCSSC--CTTCSEEECCSSC--CCEECTTSSSSCCTTCCEEECC------SSCCCEECTTTTTTCTTC
T ss_pred CEEEeCCCCcCccCccC--CCCCCEEECCCCC--CCccChhhhhhcccccCEEECC------CCcCCccChhhccCCCCC
Confidence 35566666666655544 3457888888876 4444455455 78888888888 77777775 457888888
Q ss_pred cEEecCCCCcccCchh-hhcCCcccEeecCCCCCcccc-ccccccccCcccccccccccccCcCCC-CCCCCCCccCcEE
Q 007330 271 RYLKLSLLMREELPDI-VCELFNLQTLEVEHCPRLKRL-PQGIGKLVNLRHLIYYYSNLDYMPKGF-ERLTCLRTLTEFV 347 (607)
Q Consensus 271 ~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~~~~~~l~~lp~~i-~~l~~L~~L~~~~ 347 (607)
++|+|++|.+..+|.. +.++++|++|+|++|. +..+ |..+..+++|++|+++.|.+..+|..+ ..+.++..|..++
T Consensus 91 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~ 169 (361)
T 2xot_A 91 RYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLD 169 (361)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEE
T ss_pred CEEECCCCcCCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEE
Confidence 8888888888877664 7788888888888887 5555 556788888888888888888887653 2223333444444
Q ss_pred ecCCccCC
Q 007330 348 VSGGKYSG 355 (607)
Q Consensus 348 ~~~~~~~~ 355 (607)
++++.+..
T Consensus 170 L~~N~l~~ 177 (361)
T 2xot_A 170 LSSNKLKK 177 (361)
T ss_dssp CCSSCCCC
T ss_pred CCCCCCCc
Confidence 77766543
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.22 E-value=6.7e-12 Score=137.87 Aligned_cols=115 Identities=23% Similarity=0.234 Sum_probs=93.2
Q ss_pred cccccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccccccccccCcccccEEecCCCCcccCch
Q 007330 206 PVSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIPKEKEKLVHLRYLKLSLLMREELPD 285 (607)
Q Consensus 206 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~ 285 (607)
+..+..++.|+.|++++|. +..+... +..+++|++|+|+ +|.+..+|..++.+++|++|+|++|.+..+|.
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~--l~~l~~~-~~~l~~L~~L~Ls------~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~ 287 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQ--IFNISAN-IFKYDFLTRLYLN------GNSLTELPAEIKNLSNLRVLDLSHNRLTSLPA 287 (727)
T ss_dssp -----CCCCCCEEECTTSC--CSCCCGG-GGGCCSCSCCBCT------TSCCSCCCGGGGGGTTCCEEECTTSCCSSCCS
T ss_pred hhhhccCCCCcEEECCCCC--CCCCChh-hcCCCCCCEEEee------CCcCcccChhhhCCCCCCEEeCcCCcCCccCh
Confidence 5567788899999999886 3333333 5588999999999 78888889889999999999999999889999
Q ss_pred hhhcCCcccEeecCCCCCccccccccccccCcccccccccccccC
Q 007330 286 IVCELFNLQTLEVEHCPRLKRLPQGIGKLVNLRHLIYYYSNLDYM 330 (607)
Q Consensus 286 ~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~l~~l 330 (607)
.+++|++|++|+|++|. ++.+|..++.|++|++|+++.|.+...
T Consensus 288 ~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 288 ELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp SGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSH
T ss_pred hhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCCC
Confidence 99999999999999986 888998899999999999888888643
No 131
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.21 E-value=1.7e-11 Score=111.40 Aligned_cols=65 Identities=20% Similarity=0.228 Sum_probs=29.4
Q ss_pred ccCcccccEEecCCCCcccC-chhhhcCCcccEeecCCCCCcccccc-ccccccCccccccccccccc
Q 007330 264 KEKLVHLRYLKLSLLMREEL-PDIVCELFNLQTLEVEHCPRLKRLPQ-GIGKLVNLRHLIYYYSNLDY 329 (607)
Q Consensus 264 ~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~~~~~~l~~ 329 (607)
++.+++|++|+|++|.+..+ |..++++++|++|+|++|. +..+|. .+..+++|++|+++.|.+..
T Consensus 50 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~ 116 (192)
T 1w8a_A 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQLKTLNLYDNQISC 116 (192)
T ss_dssp GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC-CCEECSSSSTTCTTCCEEECCSSCCCE
T ss_pred cccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCCe
Confidence 44444444444444444444 3334444444444444444 333322 24444444444444444443
No 132
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.20 E-value=1.3e-10 Score=115.49 Aligned_cols=283 Identities=13% Similarity=0.112 Sum_probs=159.0
Q ss_pred CCCeeEEEeeccchhhhhhhhhhhcc-CCceeEEEecCcccccccccccccccccCcccccEEecCCCCcccCch-hhhc
Q 007330 212 AKKLRSLLIHSEFEVSFHVLQGLFDY-LTCLRALKITGKVSWGQNSIYAIPKEKEKLVHLRYLKLSLLMREELPD-IVCE 289 (607)
Q Consensus 212 ~~~L~~L~l~~~~~~~~~~~~~~~~~-l~~L~~L~L~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~ 289 (607)
..+++.|.+.++- ....+.. +.. +++|++|||+ ++.+......-+.++.++++.+..+ .+|+ .+.+
T Consensus 24 ~~~l~~L~l~g~i--~~~~~~~-l~~~l~~L~~LdLs------~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~ 91 (329)
T 3sb4_A 24 ANSITHLTLTGKL--NAEDFRH-LRDEFPSLKVLDIS------NAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSN 91 (329)
T ss_dssp HHHCSEEEEEEEE--CHHHHHH-HHHSCTTCCEEEEE------EEEECCEEESSSSSGGGCCEEECTT---EECTTTTEE
T ss_pred hCceeEEEEeccc--cHHHHHH-HHHhhccCeEEecC------cceeEEecCcccccccccccccccc---ccCHHHhcc
Confidence 5667788887652 1111222 333 7889999998 6776622111223333555555555 3333 2556
Q ss_pred --------CCcccEeecCCCCCccccccc-cccccCcccccccccccccCcCC-CCCCCCCCccCcEEecCCcc----CC
Q 007330 290 --------LFNLQTLEVEHCPRLKRLPQG-IGKLVNLRHLIYYYSNLDYMPKG-FERLTCLRTLTEFVVSGGKY----SG 355 (607)
Q Consensus 290 --------L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~~~~~~l~~lp~~-i~~l~~L~~L~~~~~~~~~~----~~ 355 (607)
|++|+.|+|.+ . ++.+++. +..+++|+.|++..+.+..++.. +....++..+. .+.... ..
T Consensus 92 ~~~~~~~g~~~L~~l~L~~-~-i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~---~~~~~~~~~~~~ 166 (329)
T 3sb4_A 92 VVNGVTKGKQTLEKVILSE-K-IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIP---LGSSDAYRFKNR 166 (329)
T ss_dssp EETTEEEECTTCCC-CBCT-T-CCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEEC---TTCTHHHHTSTT
T ss_pred cccccccccCCCcEEECCc-c-ccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEec---Ccchhhhhcccc
Confidence 88888888887 3 7777654 67788888888887777766653 33332222222 111000 00
Q ss_pred -CcccccccccccccCceEEEeccCCCCCHhHHHHHHhcCCCCCcceEEEecCCCCCchhcHHHHhhcCCCCCCcceEEE
Q 007330 356 -KACNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAELEKKRNVVDLGLWFDKDEEGEEADHEEIIEALKPHSNLVALDI 434 (607)
Q Consensus 356 -~~~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 434 (607)
....+..+..|+ ..+.+.. ...+ ...+...-..+.++..+.+
T Consensus 167 i~~~~f~~~~~L~---~~i~~~~---~~~l-------------------------------~~~~~~~~~~~~~~~~l~~ 209 (329)
T 3sb4_A 167 WEHFAFIEGEPLE---TTIQVGA---MGKL-------------------------------EDEIMKAGLQPRDINFLTI 209 (329)
T ss_dssp TTTSCEEESCCCE---EEEEECT---TCCH-------------------------------HHHHHHTTCCGGGCSEEEE
T ss_pred ccccccccccccc---eeEEecC---CCcH-------------------------------HHHHhhcccCccccceEEE
Confidence 000111111111 0111111 1111 1122222234456667777
Q ss_pred eecCCCCCCChhh-hcCCCccEEEEecCCCCCcCC-CCCCCCCCCeeEecCCcCeeeCccccCCCCCCccCCCccc-eee
Q 007330 435 LGFKGKITFPKWI-MSLNNLKSLHLRSCEKCEILS-PLGKLPSLETLYIAGMSGKRVGDEFFGIGSDCNIAFPKLK-FLR 511 (607)
Q Consensus 435 ~~~~~~~~lp~~l-~~l~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~ 511 (607)
.+.-... -...+ ..+++|+.|+|.+|....... .+..+++|+.|++.++ ++.++...|. ++++|+ .+.
T Consensus 210 ~~~l~~~-~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~-------~~~~L~~~l~ 280 (329)
T 3sb4_A 210 EGKLDNA-DFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFS-------NCGRLAGTLE 280 (329)
T ss_dssp EECCCHH-HHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-------TCTTCCEEEE
T ss_pred eeeecHH-HHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhh-------CChhccEEEE
Confidence 6643221 11111 147888888888875433322 3778888999988876 7788877664 677888 888
Q ss_pred eccccccccccccccccCcccccccCCccceeeeecccCccccCC-CCCCCCCcCeEE
Q 007330 512 VVDMFEWEEWGFGITRSNVKEDVMVMPCLNYLDIQFCFKLKALPG-YLLEITALEKLE 568 (607)
Q Consensus 512 l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~ 568 (607)
+.+ .++.+..+ ++..+++|+.|++.+ ++++.++. .+.++++|+.|+
T Consensus 281 l~~--~l~~I~~~--------aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 281 LPA--SVTAIEFG--------AFMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp ECT--TCCEECTT--------TTTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEE
T ss_pred Ecc--cceEEchh--------hhhCCccCCEEEeCC-CccCccchhhhcCCcchhhhc
Confidence 876 56655533 366889999999876 46888874 567788888875
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.18 E-value=5.3e-11 Score=106.69 Aligned_cols=106 Identities=28% Similarity=0.380 Sum_probs=49.1
Q ss_pred CCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCccccccccccccccc-ccCcccccEEecCCCCcccCchh-hhcC
Q 007330 213 KKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIPKE-KEKLVHLRYLKLSLLMREELPDI-VCEL 290 (607)
Q Consensus 213 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp~~-~~~l~~L~~L~L~~~~i~~lp~~-i~~L 290 (607)
++|+.|++++|. .....+..+..+++|++|+++ ++.+..+|.. ++.+++|++|++++|.+..+|.. +.++
T Consensus 28 ~~l~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~------~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l 99 (177)
T 2o6r_A 28 SSATRLELESNK--LQSLPHGVFDKLTQLTKLSLS------QNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKL 99 (177)
T ss_dssp TTCSEEECCSSC--CCCCCTTTTTTCTTCSEEECC------SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCcEEEeCCCc--ccEeCHHHhcCcccccEEECC------CCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCC
Confidence 445555555543 222233334445555555555 4444444322 34455555555555555444443 3445
Q ss_pred CcccEeecCCCCCcccccccc-ccccCccccccccccc
Q 007330 291 FNLQTLEVEHCPRLKRLPQGI-GKLVNLRHLIYYYSNL 327 (607)
Q Consensus 291 ~~L~~L~L~~~~~l~~lp~~i-~~l~~L~~L~~~~~~l 327 (607)
++|++|++++|. ++.+|..+ ..+++|++|+++.|.+
T Consensus 100 ~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 100 TQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp TTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCe
Confidence 555555555543 44444332 4445555555444433
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.16 E-value=5.9e-11 Score=107.85 Aligned_cols=86 Identities=23% Similarity=0.288 Sum_probs=45.8
Q ss_pred ceeEEEecCcccccccccccccccccCcccccEEecCCCCcccCch-hhhcCCcccEeecCCCCCcccccc-ccccccCc
Q 007330 240 CLRALKITGKVSWGQNSIYAIPKEKEKLVHLRYLKLSLLMREELPD-IVCELFNLQTLEVEHCPRLKRLPQ-GIGKLVNL 317 (607)
Q Consensus 240 ~L~~L~L~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L 317 (607)
.|++|+++ ++.++.+|..+..+++|++|++++|.+..++. .+.++++|++|+|++|. +..+|. .+..+++|
T Consensus 32 ~l~~L~L~------~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L 104 (193)
T 2wfh_A 32 DVTELYLD------GNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR-LRCIPPRTFDGLKSL 104 (193)
T ss_dssp TCCEEECC------SSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTC
T ss_pred CCCEEECC------CCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc-cCEeCHHHhCCCCCC
Confidence 45555555 45555555555555555555555555555543 25555555555555554 444432 34555555
Q ss_pred ccccccccccccCcC
Q 007330 318 RHLIYYYSNLDYMPK 332 (607)
Q Consensus 318 ~~L~~~~~~l~~lp~ 332 (607)
++|+++.|.+..+|.
T Consensus 105 ~~L~L~~N~l~~~~~ 119 (193)
T 2wfh_A 105 RLLSLHGNDISVVPE 119 (193)
T ss_dssp CEEECCSSCCCBCCT
T ss_pred CEEECCCCCCCeeCh
Confidence 555555555555554
No 135
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.16 E-value=4.5e-11 Score=108.64 Aligned_cols=125 Identities=21% Similarity=0.231 Sum_probs=100.3
Q ss_pred eEEEEEeCCCCCccccccCCCCeeEEEeeccchhhhhhhh-hhhccCCceeEEEecCcccccccccccc-cccccCcccc
Q 007330 193 RHSMLVLGRRASFPVSIFKAKKLRSLLIHSEFEVSFHVLQ-GLFDYLTCLRALKITGKVSWGQNSIYAI-PKEKEKLVHL 270 (607)
Q Consensus 193 r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l-p~~~~~l~~L 270 (607)
+.+.+.++.+..+|..+. ++++.|++++|. +....+ ..+..+++|++|+|+ ++.++.+ |..++.+++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~--i~~~~~~~~~~~l~~L~~L~Ls------~N~l~~~~~~~~~~l~~L 80 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNE--LGRISSDGLFGRLPHLVKLELK------RNQLTGIEPNAFEGASHI 80 (192)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSCC--CCSBCCSCSGGGCTTCCEEECC------SSCCCCBCTTTTTTCTTC
T ss_pred CEEEcCCCCcCcCccCCC--CCCCEEECCCCc--CCccCCccccccCCCCCEEECC------CCCCCCcCHhHcCCcccC
Confidence 567777777777776553 389999999986 333333 247889999999999 8888877 7789999999
Q ss_pred cEEecCCCCcccCchh-hhcCCcccEeecCCCCCccc-cccccccccCcccccccccccc
Q 007330 271 RYLKLSLLMREELPDI-VCELFNLQTLEVEHCPRLKR-LPQGIGKLVNLRHLIYYYSNLD 328 (607)
Q Consensus 271 ~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~-lp~~i~~l~~L~~L~~~~~~l~ 328 (607)
++|+|++|.+..+|.. +.++++|++|+|++|. +.. .|..+..+++|++|+++.|.+.
T Consensus 81 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 81 QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CEEECCSCCCCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 9999999998888765 8899999999999998 554 4777889999999998888764
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.12 E-value=5.8e-13 Score=121.96 Aligned_cols=126 Identities=17% Similarity=0.095 Sum_probs=75.3
Q ss_pred eeEEEEEeC--CCCCccccccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccccccccccCccc
Q 007330 192 FRHSMLVLG--RRASFPVSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIPKEKEKLVH 269 (607)
Q Consensus 192 ~r~l~l~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp~~~~~l~~ 269 (607)
++...+.+. .++.++..+..+++|+.|++++|. ... ++ .+..+++|++|+++ ++.+..+|..+..+++
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~--l~~-l~-~~~~l~~L~~L~l~------~n~l~~l~~~~~~~~~ 94 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN--IEK-IS-SLSGMENLRILSLG------RNLIKKIENLDAVADT 94 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEE--ESC-CC-CHHHHTTCCEEEEE------EEEECSCSSHHHHHHH
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCC--Ccc-cc-ccccCCCCCEEECC------CCCcccccchhhcCCc
Confidence 344444333 333344456666667777776664 222 23 35666667777776 5666666666666666
Q ss_pred ccEEecCCCCcccCchhhhcCCcccEeecCCCCCcccccc--ccccccCccccccccccccc
Q 007330 270 LRYLKLSLLMREELPDIVCELFNLQTLEVEHCPRLKRLPQ--GIGKLVNLRHLIYYYSNLDY 329 (607)
Q Consensus 270 L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~--~i~~l~~L~~L~~~~~~l~~ 329 (607)
|++|++++|.+..+| .++++++|++|++++|. +..+|. .+..+++|++|++++|.+..
T Consensus 95 L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 95 LEELWISYNQIASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp CSEEEEEEEECCCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred CCEEECcCCcCCcCC-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 777777766666665 46666677777776665 555543 45666666666666666543
No 137
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.12 E-value=1.1e-10 Score=106.15 Aligned_cols=124 Identities=17% Similarity=0.175 Sum_probs=97.7
Q ss_pred eEEEEEeCCCCCccccccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCccccccccccccc-ccccCccccc
Q 007330 193 RHSMLVLGRRASFPVSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIP-KEKEKLVHLR 271 (607)
Q Consensus 193 r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp-~~~~~l~~L~ 271 (607)
+.+.+.++.+..+|..+ .++++.|++++|. +.. ++..|..+++|++|+|+ ++.++.++ ..|..+++|+
T Consensus 13 ~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~--i~~-ip~~~~~l~~L~~L~Ls------~N~i~~i~~~~f~~l~~L~ 81 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI--PRDVTELYLDGNQ--FTL-VPKELSNYKHLTLIDLS------NNRISTLSNQSFSNMTQLL 81 (193)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCCEEECCSSC--CCS-CCGGGGGCTTCCEEECC------SSCCCCCCTTTTTTCTTCC
T ss_pred CEEEcCCCCCCcCCCCC--CCCCCEEECCCCc--Cch-hHHHhhcccCCCEEECC------CCcCCEeCHhHccCCCCCC
Confidence 45666666777766544 3689999999886 333 44568889999999999 88888875 5688999999
Q ss_pred EEecCCCCcccCch-hhhcCCcccEeecCCCCCccccccc-cccccCcccccccccccc
Q 007330 272 YLKLSLLMREELPD-IVCELFNLQTLEVEHCPRLKRLPQG-IGKLVNLRHLIYYYSNLD 328 (607)
Q Consensus 272 ~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~~~~~~l~ 328 (607)
+|+|++|.+..+|+ .+..+++|++|+|++|. +..+|.. +..+++|++|+++.|.+.
T Consensus 82 ~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 82 TLILSYNRLRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp EEECCSSCCCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred EEECCCCccCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCee
Confidence 99999999888876 48889999999999987 7777764 678899999988877653
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.09 E-value=4.4e-11 Score=118.88 Aligned_cols=266 Identities=12% Similarity=0.090 Sum_probs=156.2
Q ss_pred cCCceeEEEecCcccccccccccccccccCcccccEEecCCCCcccCchhhhcCCcccEeecCCCCCcccccc-cccc--
Q 007330 237 YLTCLRALKITGKVSWGQNSIYAIPKEKEKLVHLRYLKLSLLMREELPDIVCELFNLQTLEVEHCPRLKRLPQ-GIGK-- 313 (607)
Q Consensus 237 ~l~~L~~L~L~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~-- 313 (607)
.+.+++.|.++|... ...+..+.. .+++|++|+|++|.+......-+.++.++.+.+..+ .+|+ .+..
T Consensus 23 ~~~~l~~L~l~g~i~--~~~~~~l~~---~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~----~I~~~aF~~~~ 93 (329)
T 3sb4_A 23 EANSITHLTLTGKLN--AEDFRHLRD---EFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN----FVPAYAFSNVV 93 (329)
T ss_dssp HHHHCSEEEEEEEEC--HHHHHHHHH---SCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT----EECTTTTEEEE
T ss_pred hhCceeEEEEecccc--HHHHHHHHH---hhccCeEEecCcceeEEecCcccccccccccccccc----ccCHHHhcccc
Confidence 356788888884211 222322221 178899999999998732222233444555555554 3443 3456
Q ss_pred ------ccCcccccccccccccCcCC-CCCCCCCCccCcEEecCCccCCCcc-cccccccccccCceEEEeccCCCCCHh
Q 007330 314 ------LVNLRHLIYYYSNLDYMPKG-FERLTCLRTLTEFVVSGGKYSGKAC-NIEGLRHLNHLGGVFRITGLGNVTDVD 385 (607)
Q Consensus 314 ------l~~L~~L~~~~~~l~~lp~~-i~~l~~L~~L~~~~~~~~~~~~~~~-~~~~l~~L~~L~~~l~i~~~~~~~~~~ 385 (607)
+++|+.|++.. .++.++.+ +..+++|+.+. ++.+.+..... .+..+.++..+. . .. .
T Consensus 94 ~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~---l~~n~i~~i~~~aF~~~~~l~~l~------~-~~--~-- 158 (329)
T 3sb4_A 94 NGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQ---IRKKTAPNLLPEALADSVTAIFIP------L-GS--S-- 158 (329)
T ss_dssp TTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEE---BCCSSCCEECTTSSCTTTCEEEEC------T-TC--T--
T ss_pred cccccccCCCcEEECCc-cccchhHHHhhcCcccceEE---cCCCCccccchhhhcCCCceEEec------C-cc--h--
Confidence 89999999887 88888764 66677777665 66554322211 122222222111 0 00 0
Q ss_pred HHHHHHhcCCCCCcceEEEecCCCCCchhcHHHHhhcCCCCCCcc-eEEEeecCCCCCCChhhh----cCCCccEEEEec
Q 007330 386 EAENAELEKKRNVVDLGLWFDKDEEGEEADHEEIIEALKPHSNLV-ALDILGFKGKITFPKWIM----SLNNLKSLHLRS 460 (607)
Q Consensus 386 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~lp~~l~----~l~~L~~L~L~~ 460 (607)
........+... .+..+..|+ .+.+.... .++..+. ...+++.+.+.+
T Consensus 159 ----~~~~~~~~i~~~--------------------~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~ 211 (329)
T 3sb4_A 159 ----DAYRFKNRWEHF--------------------AFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEG 211 (329)
T ss_dssp ----HHHHTSTTTTTS--------------------CEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEE
T ss_pred ----hhhhcccccccc--------------------ccccccccceeEEecCCC---cHHHHHhhcccCccccceEEEee
Confidence 000000011110 112233444 33333211 1343332 456788888887
Q ss_pred CCCCCcCCCC-CCCCCCCeeEecCCcCeeeCccccCCCCCCccCCCccceeeeccccccccccccccccCcccccccCCc
Q 007330 461 CEKCEILSPL-GKLPSLETLYIAGMSGKRVGDEFFGIGSDCNIAFPKLKFLRVVDMFEWEEWGFGITRSNVKEDVMVMPC 539 (607)
Q Consensus 461 ~~~~~~~~~l-~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~ 539 (607)
.-.......+ ..+++|+.|+|.+|.++.++...|. ++++|+.+.+.+. ++.++.+ ++..+++
T Consensus 212 ~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~-------~~~~L~~l~l~~n--i~~I~~~--------aF~~~~~ 274 (329)
T 3sb4_A 212 KLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFA-------QKKYLLKIKLPHN--LKTIGQR--------VFSNCGR 274 (329)
T ss_dssp CCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTT-------TCTTCCEEECCTT--CCEECTT--------TTTTCTT
T ss_pred eecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhh-------CCCCCCEEECCcc--cceehHH--------HhhCChh
Confidence 6322222111 1378999999999999999988774 7889999999874 6666644 3668899
Q ss_pred cc-eeeeecccCccccC-CCCCCCCCcCeEEEecC
Q 007330 540 LN-YLDIQFCFKLKALP-GYLLEITALEKLEILCC 572 (607)
Q Consensus 540 L~-~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~c 572 (607)
|+ .+.+.+ +++.++ ..+..+++|+.|++.+.
T Consensus 275 L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n 307 (329)
T 3sb4_A 275 LAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGD 307 (329)
T ss_dssp CCEEEEECT--TCCEECTTTTTTCTTEEEEEECSS
T ss_pred ccEEEEEcc--cceEEchhhhhCCccCCEEEeCCC
Confidence 99 999987 788887 56788999999998654
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.09 E-value=2e-10 Score=102.38 Aligned_cols=100 Identities=23% Similarity=0.359 Sum_probs=56.9
Q ss_pred eEEEecCcccccccccccccccccCcccccEEecCCCCcccC-chhhhcCCcccEeecCCCCCcccccccc-ccccCccc
Q 007330 242 RALKITGKVSWGQNSIYAIPKEKEKLVHLRYLKLSLLMREEL-PDIVCELFNLQTLEVEHCPRLKRLPQGI-GKLVNLRH 319 (607)
Q Consensus 242 ~~L~L~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i-~~l~~L~~ 319 (607)
++++++ ++.+..+|..+. .+|++|+|++|.+..+ |..++++++|++|+|++|. +..+|..+ ..+++|++
T Consensus 15 ~~l~~~------~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~ 85 (174)
T 2r9u_A 15 TLVNCQ------NIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQ 85 (174)
T ss_dssp SEEECC------SSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred cEEEeC------CCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhE
Confidence 455555 555666665443 5666666666666555 3345666666666666664 55555543 56666666
Q ss_pred ccccccccccCcCC-CCCCCCCCccCcEEecCCcc
Q 007330 320 LIYYYSNLDYMPKG-FERLTCLRTLTEFVVSGGKY 353 (607)
Q Consensus 320 L~~~~~~l~~lp~~-i~~l~~L~~L~~~~~~~~~~ 353 (607)
|+++.|.+..+|.. +..+++|+.|. ++++.+
T Consensus 86 L~L~~N~l~~l~~~~~~~l~~L~~L~---L~~N~~ 117 (174)
T 2r9u_A 86 LDLNDNHLKSIPRGAFDNLKSLTHIY---LYNNPW 117 (174)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCSEEE---CCSSCB
T ss_pred EECCCCccceeCHHHhccccCCCEEE---eCCCCc
Confidence 66666666666554 44444444443 555553
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.07 E-value=1.6e-12 Score=118.99 Aligned_cols=126 Identities=21% Similarity=0.264 Sum_probs=97.4
Q ss_pred CeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccccccccccCcccccEEecCCCCcccCchhhhcCCcc
Q 007330 214 KLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIPKEKEKLVHLRYLKLSLLMREELPDIVCELFNL 293 (607)
Q Consensus 214 ~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L 293 (607)
.++...+.+....... ++..+..+++|++|+++ ++.+..+| .++.+++|++|++++|.+..+|..+..+++|
T Consensus 24 ~l~~~~l~~~~~~l~~-l~~~~~~l~~L~~L~ls------~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L 95 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEK-MDATLSTLKACKHLALS------TNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTL 95 (198)
T ss_dssp TCSEEECCBCCTTCCC-CHHHHHHTTTCSEEECS------EEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHC
T ss_pred chheeEeccccCcHhh-hhHHHhcCCCCCEEECC------CCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcC
Confidence 4555555554211222 33358889999999999 78888888 8889999999999999999999888888999
Q ss_pred cEeecCCCCCccccccccccccCcccccccccccccCcC--CCCCCCCCCccCcEEecCCc
Q 007330 294 QTLEVEHCPRLKRLPQGIGKLVNLRHLIYYYSNLDYMPK--GFERLTCLRTLTEFVVSGGK 352 (607)
Q Consensus 294 ~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~l~~lp~--~i~~l~~L~~L~~~~~~~~~ 352 (607)
++|++++|. +..+| .+..+++|++|+++.|.+..+|. .+..+++|+.|. ++++.
T Consensus 96 ~~L~L~~N~-l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~---l~~N~ 151 (198)
T 1ds9_A 96 EELWISYNQ-IASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLL---LAGNP 151 (198)
T ss_dssp SEEEEEEEE-CCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEE---ECSCH
T ss_pred CEEECcCCc-CCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEE---ecCCc
Confidence 999999987 88887 78899999999999998887664 456666665554 66665
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.05 E-value=3.8e-10 Score=100.14 Aligned_cols=103 Identities=22% Similarity=0.349 Sum_probs=71.7
Q ss_pred eeEEEecCcccccccccccccccccCcccccEEecCCCCcccC-chhhhcCCcccEeecCCCCCccccccc-cccccCcc
Q 007330 241 LRALKITGKVSWGQNSIYAIPKEKEKLVHLRYLKLSLLMREEL-PDIVCELFNLQTLEVEHCPRLKRLPQG-IGKLVNLR 318 (607)
Q Consensus 241 L~~L~L~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~ 318 (607)
.++++++ ++.++.+|..+. .+|++|+|++|.+..+ |..+.++++|++|+|++|. +..+|.. +..+++|+
T Consensus 11 ~~~l~~s------~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~ 81 (170)
T 3g39_A 11 GTTVDCS------GKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLT 81 (170)
T ss_dssp TTEEECT------TSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred CCEEEeC------CCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCC
Confidence 4567777 677777776553 6778888888887777 4457778888888888876 6677665 46788888
Q ss_pred cccccccccccCcCC-CCCCCCCCccCcEEecCCccCC
Q 007330 319 HLIYYYSNLDYMPKG-FERLTCLRTLTEFVVSGGKYSG 355 (607)
Q Consensus 319 ~L~~~~~~l~~lp~~-i~~l~~L~~L~~~~~~~~~~~~ 355 (607)
+|+++.|.+..+|.. +..+++|+.|. +++|.+..
T Consensus 82 ~L~L~~N~l~~~~~~~~~~l~~L~~L~---L~~N~~~c 116 (170)
T 3g39_A 82 QLSLNDNQLKSIPRGAFDNLKSLTHIW---LLNNPWDC 116 (170)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEE---CCSSCBCT
T ss_pred EEECCCCccCEeCHHHhcCCCCCCEEE---eCCCCCCC
Confidence 888888887777764 55555555544 66666443
No 142
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.04 E-value=3.2e-10 Score=101.52 Aligned_cols=108 Identities=28% Similarity=0.414 Sum_probs=88.8
Q ss_pred CCceeEEEecCcccccccccccccc-cccCcccccEEecCCCCcccCchh-hhcCCcccEeecCCCCCccccccc-cccc
Q 007330 238 LTCLRALKITGKVSWGQNSIYAIPK-EKEKLVHLRYLKLSLLMREELPDI-VCELFNLQTLEVEHCPRLKRLPQG-IGKL 314 (607)
Q Consensus 238 l~~L~~L~L~~~~~~~~~~l~~lp~-~~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~l 314 (607)
.++|++|+++ ++.+..+|. .++.+++|++|++++|.+..+|.. ++++++|++|++++|. ++.+|.. +..+
T Consensus 27 ~~~l~~L~l~------~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l 99 (177)
T 2o6r_A 27 PSSATRLELE------SNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK-LQSLPNGVFDKL 99 (177)
T ss_dssp CTTCSEEECC------SSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTC
T ss_pred CCCCcEEEeC------CCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC-ccccCHHHhhCC
Confidence 3689999999 788888864 468899999999999999999876 6899999999999987 7777765 5889
Q ss_pred cCcccccccccccccCcCCC-CCCCCCCccCcEEecCCccCC
Q 007330 315 VNLRHLIYYYSNLDYMPKGF-ERLTCLRTLTEFVVSGGKYSG 355 (607)
Q Consensus 315 ~~L~~L~~~~~~l~~lp~~i-~~l~~L~~L~~~~~~~~~~~~ 355 (607)
++|++|+++.|.+..+|..+ ..+++|+.|. ++++.+.+
T Consensus 100 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~---l~~N~~~~ 138 (177)
T 2o6r_A 100 TQLKELALDTNQLKSVPDGIFDRLTSLQKIW---LHTNPWDC 138 (177)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEE---CCSSCBCC
T ss_pred cccCEEECcCCcceEeCHHHhcCCcccCEEE---ecCCCeec
Confidence 99999999999999988764 5566666554 77776543
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.99 E-value=5.8e-10 Score=99.30 Aligned_cols=87 Identities=25% Similarity=0.352 Sum_probs=56.2
Q ss_pred CceeEEEecCcccccccccccc-cccccCcccccEEecCCCCcccCchh-hhcCCcccEeecCCCCCccccccc-ccccc
Q 007330 239 TCLRALKITGKVSWGQNSIYAI-PKEKEKLVHLRYLKLSLLMREELPDI-VCELFNLQTLEVEHCPRLKRLPQG-IGKLV 315 (607)
Q Consensus 239 ~~L~~L~L~~~~~~~~~~l~~l-p~~~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~ 315 (607)
+.|++|+|+ ++.+..+ |..++.+++|++|+|++|.+..+|.. +.++++|++|+|++|. +..+|.. +..++
T Consensus 33 ~~L~~L~Ls------~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~ 105 (174)
T 2r9u_A 33 TDKQRLWLN------NNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH-LKSIPRGAFDNLK 105 (174)
T ss_dssp TTCSEEECC------SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred CCCcEEEeC------CCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc-cceeCHHHhcccc
Confidence 566666666 6666665 44566667777777777776666655 3666777777777665 6666654 56667
Q ss_pred CcccccccccccccCcC
Q 007330 316 NLRHLIYYYSNLDYMPK 332 (607)
Q Consensus 316 ~L~~L~~~~~~l~~lp~ 332 (607)
+|++|+++.|.+...+.
T Consensus 106 ~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 106 SLTHIYLYNNPWDCECR 122 (174)
T ss_dssp TCSEEECCSSCBCTTBG
T ss_pred CCCEEEeCCCCcccccc
Confidence 77777766666655443
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.91 E-value=4.9e-08 Score=99.05 Aligned_cols=139 Identities=10% Similarity=0.105 Sum_probs=90.2
Q ss_pred CCcceEEEeecCCCCCCChhhhcCCCccEEEEecCCCC------CcCCCCCCCCCCCeeEecCCcCeeeCccccCCCCCC
Q 007330 427 SNLVALDILGFKGKITFPKWIMSLNNLKSLHLRSCEKC------EILSPLGKLPSLETLYIAGMSGKRVGDEFFGIGSDC 500 (607)
Q Consensus 427 ~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~------~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~ 500 (607)
.+|+.+.+.+ .....-+..+..|++|+.+.+.++... -....+..+++|+.+.|.+ .++.++...|.
T Consensus 248 ~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~----- 320 (401)
T 4fdw_A 248 SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLG----- 320 (401)
T ss_dssp CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTT-----
T ss_pred CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhc-----
Confidence 4677777733 233312445568889999999877532 1223477899999999984 48888877764
Q ss_pred ccCCCccceeeeccccccccccccccccCcccccccCCccceeeeecccCccccCC-CCCCC-CCcCeEEEecCcchhHh
Q 007330 501 NIAFPKLKFLRVVDMFEWEEWGFGITRSNVKEDVMVMPCLNYLDIQFCFKLKALPG-YLLEI-TALEKLEILCCPILEQR 578 (607)
Q Consensus 501 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~-~~~~l-~~L~~L~l~~c~~l~~~ 578 (607)
++++|+.+.|.. ++..+..+ ++..+ +|+.+.+.++ .+..++. .+..+ .+++.|.+-... .+.
T Consensus 321 --~c~~L~~l~lp~--~l~~I~~~--------aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~~--~~~ 384 (401)
T 4fdw_A 321 --GNRKVTQLTIPA--NVTQINFS--------AFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPAES--VEK 384 (401)
T ss_dssp --TCCSCCEEEECT--TCCEECTT--------SSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECGGG--HHH
T ss_pred --CCCCccEEEECc--cccEEcHH--------hCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCHHH--HHH
Confidence 678899999864 35555533 35577 9999999985 5555553 34445 478899886533 233
Q ss_pred hhcCCCCCCCcc
Q 007330 579 YRKGTGEDWAKV 590 (607)
Q Consensus 579 ~~~~~~~~~~~~ 590 (607)
+.. ...|...
T Consensus 385 y~~--a~~W~~f 394 (401)
T 4fdw_A 385 YKN--ANGWRDF 394 (401)
T ss_dssp HHH--STTGGGG
T ss_pred hhh--ccchhhh
Confidence 332 2457654
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.88 E-value=2.2e-09 Score=95.17 Aligned_cols=83 Identities=27% Similarity=0.350 Sum_probs=49.4
Q ss_pred CceeEEEecCcccccccccccc-cccccCcccccEEecCCCCcccCchh-hhcCCcccEeecCCCCCccccccc-ccccc
Q 007330 239 TCLRALKITGKVSWGQNSIYAI-PKEKEKLVHLRYLKLSLLMREELPDI-VCELFNLQTLEVEHCPRLKRLPQG-IGKLV 315 (607)
Q Consensus 239 ~~L~~L~L~~~~~~~~~~l~~l-p~~~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~ 315 (607)
+.|++|+|+ ++.++.+ |..+..+++|++|+|++|.+..+|+. +.++++|++|+|++|. ++.+|.. +..++
T Consensus 30 ~~l~~L~L~------~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~ 102 (170)
T 3g39_A 30 TTTQVLYLY------DNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ-LKSIPRGAFDNLK 102 (170)
T ss_dssp TTCSEEECC------SSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred CCCcEEEcC------CCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc-cCEeCHHHhcCCC
Confidence 456666666 5556555 44456666666666666666666554 3566666666666665 5555543 55666
Q ss_pred Ccccccccccccc
Q 007330 316 NLRHLIYYYSNLD 328 (607)
Q Consensus 316 ~L~~L~~~~~~l~ 328 (607)
+|++|+++.|.+.
T Consensus 103 ~L~~L~L~~N~~~ 115 (170)
T 3g39_A 103 SLTHIWLLNNPWD 115 (170)
T ss_dssp TCCEEECCSSCBC
T ss_pred CCCEEEeCCCCCC
Confidence 6666666665554
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.72 E-value=2.2e-07 Score=94.30 Aligned_cols=83 Identities=17% Similarity=0.171 Sum_probs=46.7
Q ss_pred cCCCCCCcceEEEeecCCC-----CCCChhhhcCCCccEEEEecCCCCCcC--CCCCCCCCCCeeEecCCcCeeeCcccc
Q 007330 422 ALKPHSNLVALDILGFKGK-----ITFPKWIMSLNNLKSLHLRSCEKCEIL--SPLGKLPSLETLYIAGMSGKRVGDEFF 494 (607)
Q Consensus 422 ~l~~~~~L~~L~l~~~~~~-----~~lp~~l~~l~~L~~L~L~~~~~~~~~--~~l~~l~~L~~L~L~~~~~~~~~~~~~ 494 (607)
.+..+++|+.+.+.++... ..-+..+..|++|+.+.|.++ +..+ ..+..+++|+.+.|..+ ++.++...|
T Consensus 266 aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF 342 (401)
T 4fdw_A 266 AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--IRILGQGLLGGNRKVTQLTIPAN-VTQINFSAF 342 (401)
T ss_dssp TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCCSCCEEEECTT-CCEECTTSS
T ss_pred HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc--eEEEhhhhhcCCCCccEEEECcc-ccEEcHHhC
Confidence 3445556666666554432 112334456777777777643 2322 23566777777777443 666666555
Q ss_pred CCCCCCccCCCccceeeeccc
Q 007330 495 GIGSDCNIAFPKLKFLRVVDM 515 (607)
Q Consensus 495 ~~~~~~~~~~~~L~~L~l~~~ 515 (607)
. ++ +|+.+.+.+.
T Consensus 343 ~-------~~-~L~~l~l~~n 355 (401)
T 4fdw_A 343 N-------NT-GIKEVKVEGT 355 (401)
T ss_dssp S-------SS-CCCEEEECCS
T ss_pred C-------CC-CCCEEEEcCC
Confidence 3 45 6777777664
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.65 E-value=4.4e-08 Score=97.90 Aligned_cols=95 Identities=16% Similarity=0.128 Sum_probs=61.2
Q ss_pred cc-ccccccccccCcccccEEecCC-CCcccCch-hhhcCCcccEeecCCCCCcccccc-ccccccCccccccccccccc
Q 007330 254 QN-SIYAIPKEKEKLVHLRYLKLSL-LMREELPD-IVCELFNLQTLEVEHCPRLKRLPQ-GIGKLVNLRHLIYYYSNLDY 329 (607)
Q Consensus 254 ~~-~l~~lp~~~~~l~~L~~L~L~~-~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~~~~~~l~~ 329 (607)
++ .++.+|. +..+.+|++|+|++ |.+..+|+ .+++|++|++|+|++|. +..+|. .+.+|++|++|+++.|.+..
T Consensus 17 ~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~ 94 (347)
T 2ifg_A 17 RDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFNALES 94 (347)
T ss_dssp SSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSSCCSC
T ss_pred CCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCCccce
Confidence 44 6677776 77777777777775 66777763 46777777777777776 555543 45777777777777777777
Q ss_pred CcCCCCCCCCCCccCcEEecCCcc
Q 007330 330 MPKGFERLTCLRTLTEFVVSGGKY 353 (607)
Q Consensus 330 lp~~i~~l~~L~~L~~~~~~~~~~ 353 (607)
+|..+.....|+ .+.+.++.+
T Consensus 95 ~~~~~~~~~~L~---~l~l~~N~~ 115 (347)
T 2ifg_A 95 LSWKTVQGLSLQ---ELVLSGNPL 115 (347)
T ss_dssp CCSTTTCSCCCC---EEECCSSCC
T ss_pred eCHHHcccCCce---EEEeeCCCc
Confidence 776544332233 333655553
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.53 E-value=1.4e-06 Score=88.47 Aligned_cols=126 Identities=17% Similarity=0.125 Sum_probs=73.9
Q ss_pred CCCCCCcceEEEeecCCCCCCChhhhcCCCccEEEEecCCCCCcCCCCCCCCCCCeeEecCCcCeeeCccccCCCCCCcc
Q 007330 423 LKPHSNLVALDILGFKGKITFPKWIMSLNNLKSLHLRSCEKCEILSPLGKLPSLETLYIAGMSGKRVGDEFFGIGSDCNI 502 (607)
Q Consensus 423 l~~~~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~ 502 (607)
+..+..|+.+.+..+...- -...+..+..++.+....... .-..+..+.+|+.+.+.++ ++.++...|.
T Consensus 249 f~~~~~l~~~~~~~~~~~i-~~~~F~~~~~l~~~~~~~~~i--~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~------- 317 (394)
T 4fs7_A 249 FYGCTDLESISIQNNKLRI-GGSLFYNCSGLKKVIYGSVIV--PEKTFYGCSSLTEVKLLDS-VKFIGEEAFE------- 317 (394)
T ss_dssp TTTCSSCCEEEECCTTCEE-CSCTTTTCTTCCEEEECSSEE--CTTTTTTCTTCCEEEECTT-CCEECTTTTT-------
T ss_pred ccccccceeEEcCCCccee-eccccccccccceeccCceee--ccccccccccccccccccc-cceechhhhc-------
Confidence 3445666666665443221 223344566666666654321 1123556777888877543 6667665553
Q ss_pred CCCccceeeeccccccccccccccccCcccccccCCccceeeeecccCccccC-CCCCCCCCcCeEEEec
Q 007330 503 AFPKLKFLRVVDMFEWEEWGFGITRSNVKEDVMVMPCLNYLDIQFCFKLKALP-GYLLEITALEKLEILC 571 (607)
Q Consensus 503 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~ 571 (607)
++.+|+.+.+.+ .++.+... ++..+++|+.+.+.. +++.++ ..+..+++|+.+++..
T Consensus 318 ~c~~L~~i~lp~--~v~~I~~~--------aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 318 SCTSLVSIDLPY--LVEEIGKR--------SFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TCTTCCEECCCT--TCCEECTT--------TTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEG
T ss_pred CCCCCCEEEeCC--cccEEhHH--------hccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECC
Confidence 567788877753 34444432 245778888888764 366665 3466678888888754
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.49 E-value=1.3e-07 Score=94.54 Aligned_cols=93 Identities=23% Similarity=0.163 Sum_probs=45.0
Q ss_pred CCCCccccccCCCCeeEEEeec-cchhhhhhhhhhhccCCceeEEEecCccccccccccccc-ccccCcccccEEecCCC
Q 007330 201 RRASFPVSIFKAKKLRSLLIHS-EFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIP-KEKEKLVHLRYLKLSLL 278 (607)
Q Consensus 201 ~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp-~~~~~l~~L~~L~L~~~ 278 (607)
.+..+|. +..+++|+.|++++ |. +....+..|..+++|++|+|+ +|.+..+| ..|+++++|++|+|++|
T Consensus 20 ~l~~ip~-l~~~~~L~~L~l~~~n~--l~~~~~~~~~~l~~L~~L~l~------~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 20 ALDSLHH-LPGAENLTELYIENQQH--LQHLELRDLRGLGELRNLTIV------KSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CCTTTTT-SCSCSCCSEEECCSCSS--CCEECGGGSCSCCCCSEEECC------SSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred CCCccCC-CCCCCCeeEEEccCCCC--CCCcChhHhccccCCCEEECC------CCccceeCHHHhcCCcCCCEEeCCCC
Confidence 3444444 55555555555553 43 223333445555555555555 44554442 23455555555555555
Q ss_pred CcccCchhhhcCCcccEeecCCCC
Q 007330 279 MREELPDIVCELFNLQTLEVEHCP 302 (607)
Q Consensus 279 ~i~~lp~~i~~L~~L~~L~L~~~~ 302 (607)
.+..+|..+.....|++|+|.+|.
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSC
T ss_pred ccceeCHHHcccCCceEEEeeCCC
Confidence 555555443332235555555544
No 150
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.35 E-value=6.2e-06 Score=83.75 Aligned_cols=303 Identities=12% Similarity=0.080 Sum_probs=166.5
Q ss_pred cccccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCccccccccccccc-ccccCcccccEEecCCC------
Q 007330 206 PVSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIP-KEKEKLVHLRYLKLSLL------ 278 (607)
Q Consensus 206 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp-~~~~~l~~L~~L~L~~~------ 278 (607)
..++.+|.+|+++.+..+ ...+-..+|.+|.+|+.+++.+ .++.++ ..+.++..|+.+.+..+
T Consensus 64 ~~AF~~c~~L~~i~lp~~---i~~I~~~aF~~c~~L~~i~lp~-------~l~~I~~~aF~~c~~L~~i~~p~~l~~i~~ 133 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPST---VREIGEFAFENCSKLEIINIPD-------SVKMIGRCTFSGCYALKSILLPLMLKSIGV 133 (394)
T ss_dssp TTTTTTCTTEEEEECCTT---CCEECTTTTTTCTTCCEECCCT-------TCCEECTTTTTTCTTCCCCCCCTTCCEECT
T ss_pred HHHhhCCCCceEEEeCCC---ccCcchhHhhCCCCCcEEEeCC-------CceEccchhhcccccchhhcccCceeeecc
Confidence 346677888888888654 3333355677888888888862 133332 33445555555444322
Q ss_pred ---------------CcccCc-hhhhcCCcccEeecCCCCCccccccc-cccccCcccccccccccccCcC-CCCCCCCC
Q 007330 279 ---------------MREELP-DIVCELFNLQTLEVEHCPRLKRLPQG-IGKLVNLRHLIYYYSNLDYMPK-GFERLTCL 340 (607)
Q Consensus 279 ---------------~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~~~~~~l~~lp~-~i~~l~~L 340 (607)
.+..+. ..+.++.+|+.+.+.++ +..++.. +..+.+|+.+.+..+ +..++. .+.....|
T Consensus 134 ~aF~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L 210 (394)
T 4fs7_A 134 EAFKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILL 210 (394)
T ss_dssp TTTTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTC
T ss_pred eeeecccccccccCccccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC-ceEeCchhhcccccc
Confidence 011111 23566777777777653 3444433 456777777775433 444433 24445555
Q ss_pred CccCcEEecCCccCCCcccccccccccccCceEEEeccCCCCCHhHHHHHHhcCCCCCcceEEEecCCCCCchhcHHHHh
Q 007330 341 RTLTEFVVSGGKYSGKACNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAELEKKRNVVDLGLWFDKDEEGEEADHEEII 420 (607)
Q Consensus 341 ~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 420 (607)
+.+. ...+.. ...........|+ .+.+.. .+..+ ....+..+..++.+.+..+... -..
T Consensus 211 ~~i~---~~~~~~-~i~~~~~~~~~l~----~i~ip~--~~~~i---~~~~f~~~~~l~~~~~~~~~~~--------i~~ 269 (394)
T 4fs7_A 211 ENME---FPNSLY-YLGDFALSKTGVK----NIIIPD--SFTEL---GKSVFYGCTDLESISIQNNKLR--------IGG 269 (394)
T ss_dssp CBCC---CCTTCC-EECTTTTTTCCCC----EEEECT--TCCEE---CSSTTTTCSSCCEEEECCTTCE--------ECS
T ss_pred ceee---cCCCce-EeehhhcccCCCc----eEEECC--Cceec---ccccccccccceeEEcCCCcce--------eec
Confidence 5443 221110 0000111112222 222221 01100 0123456677777777544210 011
Q ss_pred hcCCCCCCcceEEEeecCCCCCCChhhhcCCCccEEEEecCCCCCcC--CCCCCCCCCCeeEecCCcCeeeCccccCCCC
Q 007330 421 EALKPHSNLVALDILGFKGKITFPKWIMSLNNLKSLHLRSCEKCEIL--SPLGKLPSLETLYIAGMSGKRVGDEFFGIGS 498 (607)
Q Consensus 421 ~~l~~~~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~--~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~ 498 (607)
..+.....++.+........ ...+..+.+|+.+.+..+ .+.+ ..+..+.+|+.++|.++ ++.++...|.
T Consensus 270 ~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~--- 340 (394)
T 4fs7_A 270 SLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFR--- 340 (394)
T ss_dssp CTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTT---
T ss_pred cccccccccceeccCceeec---cccccccccccccccccc--cceechhhhcCCCCCCEEEeCCc-ccEEhHHhcc---
Confidence 23455677777766543321 223457889999999765 3323 34778999999999643 7888877664
Q ss_pred CCccCCCccceeeeccccccccccccccccCcccccccCCccceeeeecccCccccCCCCCCCCCcCeE
Q 007330 499 DCNIAFPKLKFLRVVDMFEWEEWGFGITRSNVKEDVMVMPCLNYLDIQFCFKLKALPGYLLEITALEKL 567 (607)
Q Consensus 499 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L 567 (607)
++.+|+.+.+.. +++.+... ++..+++|+.+++.. .++.+...+.++++|+.+
T Consensus 341 ----~c~~L~~i~lp~--~l~~I~~~--------aF~~C~~L~~i~lp~--~~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 341 ----GCTSLSNINFPL--SLRKIGAN--------AFQGCINLKKVELPK--RLEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp ----TCTTCCEECCCT--TCCEECTT--------TBTTCTTCCEEEEEG--GGGGGGGGBCTTCEEEEE
T ss_pred ----CCCCCCEEEECc--cccEehHH--------HhhCCCCCCEEEECC--CCEEhhheecCCCCCcEE
Confidence 678899998864 35555433 356889999999875 455555556667777665
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.34 E-value=6.8e-08 Score=96.22 Aligned_cols=136 Identities=26% Similarity=0.226 Sum_probs=71.8
Q ss_pred CCCCCCcceEEEeecCCCCCCChhhhcCCCccEEEEecCCCCC-cCCCC--CCCCCCCeeEecCCc---CeeeCc----c
Q 007330 423 LKPHSNLVALDILGFKGKITFPKWIMSLNNLKSLHLRSCEKCE-ILSPL--GKLPSLETLYIAGMS---GKRVGD----E 492 (607)
Q Consensus 423 l~~~~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~-~~~~l--~~l~~L~~L~L~~~~---~~~~~~----~ 492 (607)
+..+++|+.|.++++.... ++. + .+++|++|+|..|.... .+..+ ..+|+|++|+|+.+. ...... .
T Consensus 168 l~~~P~L~~L~L~g~~~l~-l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~ 244 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNLS-IGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244 (362)
T ss_dssp HHTCTTCCEEEEECCBTCB-CCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred HhcCCCCcEEEEeCCCCce-ecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence 3455677777777764333 444 2 36777777777664221 11112 257777777775321 111000 0
Q ss_pred ccCCCCCCccCCCccceeeeccccccccccccccccCcccccccCCccceeeeecccCccc-----cCCCCCCCCCcCeE
Q 007330 493 FFGIGSDCNIAFPKLKFLRVVDMFEWEEWGFGITRSNVKEDVMVMPCLNYLDIQFCFKLKA-----LPGYLLEITALEKL 567 (607)
Q Consensus 493 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-----lp~~~~~l~~L~~L 567 (607)
.+.. ..||+|+.|.+.+|......... +. ....+|+|++|+++.| .++. ++.++.++++|+.|
T Consensus 245 ~l~~-----~~~p~Lr~L~L~~~~i~~~~~~~-----la-~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L 312 (362)
T 2ra8_A 245 LFSK-----DRFPNLKWLGIVDAEEQNVVVEM-----FL-ESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFI 312 (362)
T ss_dssp GSCT-----TTCTTCCEEEEESCTTHHHHHHH-----HH-HCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEE
T ss_pred HHhc-----CCCCCcCEEeCCCCCCchHHHHH-----HH-hCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEE
Confidence 1110 25778888887766332211110 00 0125778888888764 4543 45555567778888
Q ss_pred EEecCc
Q 007330 568 EILCCP 573 (607)
Q Consensus 568 ~l~~c~ 573 (607)
++++|.
T Consensus 313 ~L~~n~ 318 (362)
T 2ra8_A 313 NMKYNY 318 (362)
T ss_dssp ECCSBB
T ss_pred ECCCCc
Confidence 887774
No 152
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.28 E-value=9e-08 Score=96.14 Aligned_cols=154 Identities=16% Similarity=0.095 Sum_probs=95.2
Q ss_pred cCceeEEEEEeCCCCCc-----ccccc-CCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCccccccccccc---
Q 007330 189 LEKFRHSMLVLGRRASF-----PVSIF-KAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYA--- 259 (607)
Q Consensus 189 ~~~~r~l~l~~~~~~~~-----~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~--- 259 (607)
...++.+.+.++.+... ...+. ..++|+.|++++|.. .......+...+++|+.|+|+ ++.+..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l-~~~~~~~l~~~L~~L~~L~Ls------~n~l~~~~~ 143 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQL-DPAGLRTLLPVFLRARKLGLQ------LNSLGPEAC 143 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCC-CHHHHHHTHHHHHTEEEEECC------SSCCCHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCC-CHHHHHHHHHHHHhccHhhcC------CCCCCHHHH
Confidence 34567777777766531 12222 236888888888862 222234444556688888888 555432
Q ss_pred --ccccc-cCcccccEEecCCCCccc-----CchhhhcCCcccEeecCCCCCccc-----cccccccccCcccccccccc
Q 007330 260 --IPKEK-EKLVHLRYLKLSLLMREE-----LPDIVCELFNLQTLEVEHCPRLKR-----LPQGIGKLVNLRHLIYYYSN 326 (607)
Q Consensus 260 --lp~~~-~~l~~L~~L~L~~~~i~~-----lp~~i~~L~~L~~L~L~~~~~l~~-----lp~~i~~l~~L~~L~~~~~~ 326 (607)
+...+ ...++|++|+|++|.++. ++..+..+++|++|+|++|. ++. ++..+...++|++|++++|.
T Consensus 144 ~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 144 KDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred HHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 22222 245778888888888754 45556778888888888887 543 45566777888888888887
Q ss_pred ccc-----CcCCCCCCCCCCccCcEEecCCcc
Q 007330 327 LDY-----MPKGFERLTCLRTLTEFVVSGGKY 353 (607)
Q Consensus 327 l~~-----lp~~i~~l~~L~~L~~~~~~~~~~ 353 (607)
+.. ++..+...++|+.|+ +++|.+
T Consensus 223 i~~~g~~~l~~~L~~~~~L~~L~---Ls~N~i 251 (372)
T 3un9_A 223 AGDTAALALARAAREHPSLELLH---LYFNEL 251 (372)
T ss_dssp CCHHHHHHHHHHHHHCSSCCEEE---CTTSSC
T ss_pred CCHHHHHHHHHHHHhCCCCCEEe---ccCCCC
Confidence 753 222333344444443 666653
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.21 E-value=3.1e-07 Score=80.14 Aligned_cols=40 Identities=15% Similarity=0.083 Sum_probs=25.6
Q ss_pred CccceeeeecccCccccC-CCCCCCCCcCeEEEecCcchhH
Q 007330 538 PCLNYLDIQFCFKLKALP-GYLLEITALEKLEILCCPILEQ 577 (607)
Q Consensus 538 ~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~ 577 (607)
++|++|+|++|++++.-- ..+.++++|+.|++++|+++++
T Consensus 114 ~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 114 KSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred CCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 467777777777665411 1234567777777777776654
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.20 E-value=5.2e-07 Score=89.81 Aligned_cols=176 Identities=15% Similarity=0.086 Sum_probs=98.8
Q ss_pred HhhcCCCCCCcceEEEeecCC---------CCCCChhhhcCCCccEEEEecCCCCCcCCCCCCCCCCCeeEecCCcCeee
Q 007330 419 IIEALKPHSNLVALDILGFKG---------KITFPKWIMSLNNLKSLHLRSCEKCEILSPLGKLPSLETLYIAGMSGKRV 489 (607)
Q Consensus 419 ~~~~l~~~~~L~~L~l~~~~~---------~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~ 489 (607)
+.++...+++|+.|.+.+... ...++.++..+|+|+.|.|++|.... ++.+ .+++|++|+|..|.+..-
T Consensus 131 L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~-l~~~-~~~~L~~L~L~~~~l~~~ 208 (362)
T 2ra8_A 131 IVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS-IGKK-PRPNLKSLEIISGGLPDS 208 (362)
T ss_dssp HHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB-CCSC-BCTTCSEEEEECSBCCHH
T ss_pred HHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce-eccc-cCCCCcEEEEecCCCChH
Confidence 333444556777777654322 11255666789999999999985333 3334 389999999998864322
Q ss_pred CccccCCCCCCccCCCccceeeeccccccccccccccccCcccc--cccCCccceeeeecccCccccCCC---CCCCCCc
Q 007330 490 GDEFFGIGSDCNIAFPKLKFLRVVDMFEWEEWGFGITRSNVKED--VMVMPCLNYLDIQFCFKLKALPGY---LLEITAL 564 (607)
Q Consensus 490 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~--~~~~~~L~~L~l~~c~~l~~lp~~---~~~l~~L 564 (607)
.-..+.. ..+|+|++|+|+...+......+ +..+... ...+|+|++|.+++|......+.. ...+++|
T Consensus 209 ~l~~l~~-----~~lp~L~~L~L~~~~~~~~~~~~--~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L 281 (362)
T 2ra8_A 209 VVEDILG-----SDLPNLEKLVLYVGVEDYGFDGD--MNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQL 281 (362)
T ss_dssp HHHHHHH-----SBCTTCCEEEEECBCGGGTCCSC--GGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGC
T ss_pred HHHHHHH-----ccCCCCcEEEEeccccccccchh--HHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCC
Confidence 1111111 26899999998642211000000 0000001 136899999999998643322111 1247899
Q ss_pred CeEEEecCcchhHhhhcCCCCCCCcccccCeeEeCceEee
Q 007330 565 EKLEILCCPILEQRYRKGTGEDWAKVAHVPTITINRQYVQ 604 (607)
Q Consensus 565 ~~L~l~~c~~l~~~~~~~~~~~~~~~~~ip~~~~~~~~~~ 604 (607)
++|+++.|. +.+.-............++-.+.+..+.+.
T Consensus 282 ~~LdLs~n~-L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 282 ETMDISAGV-LTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp SEEECCSSC-CBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CEEECCCCC-CChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 999998764 443110001111134566777777766543
No 155
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.15 E-value=7.5e-07 Score=89.40 Aligned_cols=139 Identities=13% Similarity=0.047 Sum_probs=96.8
Q ss_pred cCceeEEEEEeCCCCCc--cccccCCCCeeEEEeeccchh--hhhhhhhhh-ccCCceeEEEecCccccccccccccccc
Q 007330 189 LEKFRHSMLVLGRRASF--PVSIFKAKKLRSLLIHSEFEV--SFHVLQGLF-DYLTCLRALKITGKVSWGQNSIYAIPKE 263 (607)
Q Consensus 189 ~~~~r~l~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~-~~l~~L~~L~L~~~~~~~~~~l~~lp~~ 263 (607)
...++.+.+.++.+... ......+++|+.|++++|... ....+...+ ...+.|++|+|++|. ++......++..
T Consensus 100 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~ 178 (372)
T 3un9_A 100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEG 178 (372)
T ss_dssp SSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHH
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHH
Confidence 35788999988877531 112234568999999999721 112223333 357889999999431 111222345666
Q ss_pred ccCcccccEEecCCCCccc-----CchhhhcCCcccEeecCCCCCccc-----cccccccccCccccccccccccc
Q 007330 264 KEKLVHLRYLKLSLLMREE-----LPDIVCELFNLQTLEVEHCPRLKR-----LPQGIGKLVNLRHLIYYYSNLDY 329 (607)
Q Consensus 264 ~~~l~~L~~L~L~~~~i~~-----lp~~i~~L~~L~~L~L~~~~~l~~-----lp~~i~~l~~L~~L~~~~~~l~~ 329 (607)
+...++|++|+|++|.++. ++..+...++|++|+|++|. ++. ++..+...++|++|++++|.+..
T Consensus 179 L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 179 LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 7788999999999999764 35567788999999999997 653 45556678999999999998853
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.12 E-value=3.6e-06 Score=73.44 Aligned_cols=94 Identities=7% Similarity=0.033 Sum_probs=66.3
Q ss_pred CCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccccccccccCcccccEEecCCCC-cccC-chhhh
Q 007330 211 KAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIPKEKEKLVHLRYLKLSLLM-REEL-PDIVC 288 (607)
Q Consensus 211 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~-i~~l-p~~i~ 288 (607)
.-.+|+.|+++++. .....+.. +..+++|+.|+|++|..+++..+..+...-...++|++|+|++|. ++.- -..+.
T Consensus 59 ~~~~L~~LDLs~~~-Itd~GL~~-L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~ 136 (176)
T 3e4g_A 59 DKYKIQAIDATDSC-IMSIGFDH-MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH 136 (176)
T ss_dssp TCCCEEEEEEESCC-CCGGGGGG-GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG
T ss_pred CCceEeEEeCcCCC-ccHHHHHH-hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh
Confidence 34578999999886 34444444 578999999999988877777775553210012479999999886 6542 13467
Q ss_pred cCCcccEeecCCCCCccc
Q 007330 289 ELFNLQTLEVEHCPRLKR 306 (607)
Q Consensus 289 ~L~~L~~L~L~~~~~l~~ 306 (607)
++++|++|++++|..+++
T Consensus 137 ~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GCTTCCEEEEESCTTCCC
T ss_pred cCCCCCEEECCCCCCCCc
Confidence 889999999999987765
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.11 E-value=1.4e-06 Score=78.14 Aligned_cols=118 Identities=13% Similarity=0.122 Sum_probs=64.0
Q ss_pred cccCCCCeeEEEeecc-c--hhhhhhhhhhhccCCceeEEEecCcccccccccccccccccCcccccEEecCCCCccc--
Q 007330 208 SIFKAKKLRSLLIHSE-F--EVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIPKEKEKLVHLRYLKLSLLMREE-- 282 (607)
Q Consensus 208 ~~~~~~~L~~L~l~~~-~--~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~-- 282 (607)
.+...+.|++|++++| . ......+...+...+.|++|+|++|. +++.....+...+...+.|++|+|++|.+..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 4455667777777766 3 11112234445566677777777321 1111122234444555667777777776554
Q ss_pred ---CchhhhcCCcccEeec--CCCCCccc-----cccccccccCccccccccccc
Q 007330 283 ---LPDIVCELFNLQTLEV--EHCPRLKR-----LPQGIGKLVNLRHLIYYYSNL 327 (607)
Q Consensus 283 ---lp~~i~~L~~L~~L~L--~~~~~l~~-----lp~~i~~l~~L~~L~~~~~~l 327 (607)
+...+...+.|++|+| ++|. ++. +...+...++|++|+++.|.+
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 3445566667777777 5555 432 333444556666666665554
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.05 E-value=9.8e-05 Score=74.80 Aligned_cols=307 Identities=11% Similarity=0.016 Sum_probs=141.9
Q ss_pred ccccCCC-CeeEEEeeccchhhhhhhhhhhccCCceeEEEecCccccccccccccc-ccccCcccccEEecCCCCcccCc
Q 007330 207 VSIFKAK-KLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIP-KEKEKLVHLRYLKLSLLMREELP 284 (607)
Q Consensus 207 ~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp 284 (607)
.++.++. .|+++.+... ...+-...|.+|.+|+.+.+..+. ...++.+. ..|..+.+|+.+.+..+ +..++
T Consensus 57 ~aF~~~~~~L~sI~iP~s---vt~Ig~~AF~~C~~L~~i~~~~n~---p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~ 129 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDT---VTEIGSNAFYNCTSLKRVTIQDNK---PSCVKKIGRQAFMFCSELTDIPILDS-VTEID 129 (394)
T ss_dssp TTTTTCCSCCCEEEECTT---CCEECTTTTTTCTTCCEEEEGGGC---CCCCCEECTTTTTTCTTCCBCGGGTT-CSEEC
T ss_pred hhccCCCCcCEEEEECCC---eeEEhHHHhhCCccCceEeecCCC---CCeeeEechhhchhcccceeeccCCc-cceeh
Confidence 3455564 4788877654 333335567788888888876210 01244552 44666677777666543 45554
Q ss_pred hh-hhcCCcccEeecCCCCCcccccc-ccccccCcccccccccccccCcCCCCCCCCCCccCcEEecCCccCCCcccccc
Q 007330 285 DI-VCELFNLQTLEVEHCPRLKRLPQ-GIGKLVNLRHLIYYYSNLDYMPKGFERLTCLRTLTEFVVSGGKYSGKACNIEG 362 (607)
Q Consensus 285 ~~-i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~ 362 (607)
.. +..+.+|+.+.+... +..++. .+..+.+|+.+.+.. .+..+......-.+|+.+. +......-.......
T Consensus 130 ~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~-~~~~I~~~aF~~~~l~~i~---ip~~~~~i~~~af~~ 203 (394)
T 4gt6_A 130 SEAFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPD-SVTAIEERAFTGTALTQIH---IPAKVTRIGTNAFSE 203 (394)
T ss_dssp TTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCCCSEEE---ECTTCCEECTTTTTT
T ss_pred hhhhhhhcccccccccce--eeeecccceecccccccccccc-eeeEeccccccccceeEEE---ECCcccccccchhhh
Confidence 33 567777888777643 344432 345566666666432 2344433322223333332 222110000111112
Q ss_pred cccccccCceEEEeccCCCCCHhHHHHHHhcCCCCCcceEEEecCCCCCchhcHHHHhhcCCCCCCcceEEEeecCCCCC
Q 007330 363 LRHLNHLGGVFRITGLGNVTDVDEAENAELEKKRNVVDLGLWFDKDEEGEEADHEEIIEALKPHSNLVALDILGFKGKIT 442 (607)
Q Consensus 363 l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 442 (607)
+..+. ........ . ......-...+.... ...........+..+.+... ....
T Consensus 204 c~~l~----~~~~~~~~-~--------------~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ip~~-v~~i 256 (394)
T 4gt6_A 204 CFALS----TITSDSES-Y--------------PAIDNVLYEKSANGD-------YALIRYPSQREDPAFKIPNG-VARI 256 (394)
T ss_dssp CTTCC----EEEECCSS-S--------------CBSSSCEEEECTTSC-------EEEEECCTTCCCSEEECCTT-EEEE
T ss_pred ccccc----eecccccc-c--------------ccccceeeccccccc-------ccccccccccccceEEcCCc-ceEc
Confidence 22222 11110000 0 000000000000000 00000001112222222110 0000
Q ss_pred CChhhhcCCCccEEEEecCCCCCcCCCCCCCCCCCeeEecCCcCeeeCccccCCCCCCccCCCccceeeecccccccccc
Q 007330 443 FPKWIMSLNNLKSLHLRSCEKCEILSPLGKLPSLETLYIAGMSGKRVGDEFFGIGSDCNIAFPKLKFLRVVDMFEWEEWG 522 (607)
Q Consensus 443 lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 522 (607)
-...+..+.+|+.+.+......-.-..+..+++|+.+.+.. .++.++...|. ++.+|+.+.|.+ +++.+.
T Consensus 257 ~~~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~-------~c~~L~~i~lp~--~v~~I~ 326 (394)
T 4gt6_A 257 ETHAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSS-RITELPESVFA-------GCISLKSIDIPE--GITQIL 326 (394)
T ss_dssp CTTTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTT-------TCTTCCEEECCT--TCCEEC
T ss_pred ccceeeecccccEEecccccceecCcccccccccccccCCC-cccccCceeec-------CCCCcCEEEeCC--cccEeh
Confidence 12233456677777765542211223355677777777742 36666666553 567777777753 344443
Q ss_pred ccccccCcccccccCCccceeeeecccCccccC-CCCCCCCCcCeEEEecCc
Q 007330 523 FGITRSNVKEDVMVMPCLNYLDIQFCFKLKALP-GYLLEITALEKLEILCCP 573 (607)
Q Consensus 523 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~c~ 573 (607)
.. ++..+.+|+.+.|-. .++.+. ..+.++++|+.+++.+..
T Consensus 327 ~~--------aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 327 DD--------AFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TT--------TTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCH
T ss_pred Hh--------HhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCce
Confidence 22 245677788877754 466665 335667788888777653
No 159
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.99 E-value=1.3e-06 Score=78.16 Aligned_cols=101 Identities=12% Similarity=0.079 Sum_probs=78.5
Q ss_pred hhhhhhhhhccCCceeEEEecCcccccccccccccccccCcccccEEecCCCCccc-----CchhhhcCCcccEeecCCC
Q 007330 227 SFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIPKEKEKLVHLRYLKLSLLMREE-----LPDIVCELFNLQTLEVEHC 301 (607)
Q Consensus 227 ~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~-----lp~~i~~L~~L~~L~L~~~ 301 (607)
..+.+...+...+.|++|+|++|..++...+..+...+...++|++|+|++|.+.. +...+...++|++|+|++|
T Consensus 24 ~~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 24 VEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp HHHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence 45556777889999999999954334344445566777788999999999999754 4555677889999999999
Q ss_pred CCccc-----cccccccccCcccccc--cccccc
Q 007330 302 PRLKR-----LPQGIGKLVNLRHLIY--YYSNLD 328 (607)
Q Consensus 302 ~~l~~-----lp~~i~~l~~L~~L~~--~~~~l~ 328 (607)
. ++. +...+...++|++|++ ++|.+.
T Consensus 104 ~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 104 F-ISGSGILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp C-CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred c-CCHHHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 7 654 5667788889999998 788775
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.92 E-value=4.3e-06 Score=78.80 Aligned_cols=80 Identities=16% Similarity=0.131 Sum_probs=57.0
Q ss_pred hccCCceeEEEecCcccccccccccc---cccccCcccccEEecCCCCcccCchhhhcCC--cccEeecCCCCCcccccc
Q 007330 235 FDYLTCLRALKITGKVSWGQNSIYAI---PKEKEKLVHLRYLKLSLLMREELPDIVCELF--NLQTLEVEHCPRLKRLPQ 309 (607)
Q Consensus 235 ~~~l~~L~~L~L~~~~~~~~~~l~~l---p~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~--~L~~L~L~~~~~l~~lp~ 309 (607)
...++.|++|+|+ +|.+..+ |..++.+++|++|+|++|.+..+ ..+..+. +|++|+|++|..-..+|.
T Consensus 166 ~~~l~~L~~L~Ls------~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 166 EENIPELLSLNLS------NNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRD 238 (267)
T ss_dssp HHHCTTCCEEECT------TSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSS
T ss_pred HhhCCCCCEEECC------CCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCc
Confidence 3568888888888 7777654 34556788888888888888777 3355555 888888888883334442
Q ss_pred -------ccccccCccccc
Q 007330 310 -------GIGKLVNLRHLI 321 (607)
Q Consensus 310 -------~i~~l~~L~~L~ 321 (607)
.+..+++|+.||
T Consensus 239 ~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 239 QSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHHHHHCTTCCEES
T ss_pred chhHHHHHHHHCcccCeEC
Confidence 256777777777
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.67 E-value=0.00071 Score=68.42 Aligned_cols=314 Identities=11% Similarity=0.084 Sum_probs=163.6
Q ss_pred eeEEEEEeCCCCCc-cccccCCCCeeEEEeeccc-hhhhhhhhhhhccCCceeEEEecCccccccccccccc-ccccCcc
Q 007330 192 FRHSMLVLGRRASF-PVSIFKAKKLRSLLIHSEF-EVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIP-KEKEKLV 268 (607)
Q Consensus 192 ~r~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp-~~~~~l~ 268 (607)
++.+.+-.. +..+ ..++.+|++|+++.+..+. .....+-...|..+..|+.+.+. . .++.++ ..+..+.
T Consensus 66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~------~-~~~~I~~~aF~~c~ 137 (394)
T 4gt6_A 66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPIL------D-SVTEIDSEAFHHCE 137 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGG------T-TCSEECTTTTTTCT
T ss_pred CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccC------C-ccceehhhhhhhhc
Confidence 566666432 2222 4678899999999997652 12223335567888888887775 2 355553 4577889
Q ss_pred cccEEecCCCCcccCch-hhhcCCcccEeecCCCCCccccccccccccCcccccccccccccCc-CCCCCCCCCCccCcE
Q 007330 269 HLRYLKLSLLMREELPD-IVCELFNLQTLEVEHCPRLKRLPQGIGKLVNLRHLIYYYSNLDYMP-KGFERLTCLRTLTEF 346 (607)
Q Consensus 269 ~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~l~~lp-~~i~~l~~L~~L~~~ 346 (607)
+|+.+.+..+ +..++. .+..+.+|+.+.+.++ +..+........+|+.+.+..+ +..+. ..+....++....
T Consensus 138 ~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~~-~~~i~~~af~~c~~l~~~~-- 211 (394)
T 4gt6_A 138 ELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPAK-VTRIGTNAFSECFALSTIT-- 211 (394)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECTT-CCEECTTTTTTCTTCCEEE--
T ss_pred ccccccccce-eeeecccceecccccccccccce--eeEeccccccccceeEEEECCc-ccccccchhhhccccceec--
Confidence 9999999754 455544 4778899999998763 5555544444456766664322 11211 2233333333322
Q ss_pred EecCCccCCCcccccccccccccCceEEEeccCCCCCHhHHHHHHhcCCCCCcceEEEecCCCCCchhcHHHHhhcCCCC
Q 007330 347 VVSGGKYSGKACNIEGLRHLNHLGGVFRITGLGNVTDVDEAENAELEKKRNVVDLGLWFDKDEEGEEADHEEIIEALKPH 426 (607)
Q Consensus 347 ~~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~ 426 (607)
............+....... ........ ....+..+.+...- ..--...+..+
T Consensus 212 -~~~~~~~~~~~~~~~~~~~~----~~~~~~~~--------------~~~~~~~~~ip~~v--------~~i~~~aF~~c 264 (394)
T 4gt6_A 212 -SDSESYPAIDNVLYEKSANG----DYALIRYP--------------SQREDPAFKIPNGV--------ARIETHAFDSC 264 (394)
T ss_dssp -ECCSSSCBSSSCEEEECTTS----CEEEEECC--------------TTCCCSEEECCTTE--------EEECTTTTTTC
T ss_pred -ccccccccccceeecccccc----cccccccc--------------cccccceEEcCCcc--------eEcccceeeec
Confidence 22211100000000000000 00000000 00111111110000 00001234556
Q ss_pred CCcceEEEeecCCCCCCChhhhcCCCccEEEEecCCCCCcC--CCCCCCCCCCeeEecCCcCeeeCccccCCCCCCccCC
Q 007330 427 SNLVALDILGFKGKITFPKWIMSLNNLKSLHLRSCEKCEIL--SPLGKLPSLETLYIAGMSGKRVGDEFFGIGSDCNIAF 504 (607)
Q Consensus 427 ~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~--~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~ 504 (607)
..|+.+.+......- -...+..+++|+.+.+... ...+ ..+..+.+|+.+.|.++ ++.++...|. ++
T Consensus 265 ~~L~~i~lp~~~~~I-~~~aF~~c~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~-------~C 333 (394)
T 4gt6_A 265 AYLASVKMPDSVVSI-GTGAFMNCPALQDIEFSSR--ITELPESVFAGCISLKSIDIPEG-ITQILDDAFA-------GC 333 (394)
T ss_dssp SSCCEEECCTTCCEE-CTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-------TC
T ss_pred ccccEEeccccccee-cCcccccccccccccCCCc--ccccCceeecCCCCcCEEEeCCc-ccEehHhHhh-------CC
Confidence 677777664432211 1233457788888888643 2322 23678889999998653 7778776663 67
Q ss_pred CccceeeeccccccccccccccccCcccccccCCccceeeeecccCccccCCCCCCCCCcCeEEEe
Q 007330 505 PKLKFLRVVDMFEWEEWGFGITRSNVKEDVMVMPCLNYLDIQFCFKLKALPGYLLEITALEKLEIL 570 (607)
Q Consensus 505 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~ 570 (607)
.+|+.+.|.. +++.+... ++..+++|+.+++.+... .+ ..+....+|+.+.+.
T Consensus 334 ~~L~~i~ip~--sv~~I~~~--------aF~~C~~L~~i~~~~~~~--~~-~~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 334 EQLERIAIPS--SVTKIPES--------AFSNCTALNNIEYSGSRS--QW-NAISTDSGLQNLPVA 386 (394)
T ss_dssp TTCCEEEECT--TCCBCCGG--------GGTTCTTCCEEEESSCHH--HH-HTCBCCCCC------
T ss_pred CCCCEEEECc--ccCEEhHh--------HhhCCCCCCEEEECCcee--eh-hhhhccCCCCEEEeC
Confidence 8899988853 35555432 355888999999887421 12 234456677777664
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.53 E-value=0.00037 Score=70.13 Aligned_cols=81 Identities=10% Similarity=0.066 Sum_probs=40.2
Q ss_pred cccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCccccccccccccc-ccccCcccccEEecCCCCcccCchh
Q 007330 208 SIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIP-KEKEKLVHLRYLKLSLLMREELPDI 286 (607)
Q Consensus 208 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~ 286 (607)
++....+|+++.+... +..+-...|.+|.+|+.+.+. . .++.++ ..|.++ .|+.+.+..+ +..++..
T Consensus 41 ~~~~~~~i~~v~ip~~---vt~Ig~~aF~~C~~L~~I~lp------~-~v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~ 108 (379)
T 4h09_A 41 WYKDRDRISEVRVNSG---ITSIGEANFNSCYNMTKVTVA------S-TVTSIGDGAFADT-KLQSYTGMER-VKKFGDY 108 (379)
T ss_dssp TGGGGGGCSEEEECTT---EEEECTTTTTTCTTCCEEEEC------T-TCCEECTTTTTTC-CCCEEEECTT-CCEECTT
T ss_pred ccccccCCEEEEeCCC---ccChHHHHhhCCCCCCEEEeC------C-cceEechhhhcCC-CCceEECCce-eeEeccc
Confidence 3444556666666543 223334456667777777765 2 244442 334343 4555554432 4444443
Q ss_pred hhcCCcccEeecCC
Q 007330 287 VCELFNLQTLEVEH 300 (607)
Q Consensus 287 i~~L~~L~~L~L~~ 300 (607)
.-...+|+.+.+.+
T Consensus 109 aF~~~~L~~i~lp~ 122 (379)
T 4h09_A 109 VFQGTDLDDFEFPG 122 (379)
T ss_dssp TTTTCCCSEEECCT
T ss_pred eeccCCcccccCCC
Confidence 22233566666654
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.41 E-value=0.0016 Score=65.42 Aligned_cols=118 Identities=8% Similarity=0.025 Sum_probs=63.9
Q ss_pred cCceeEEEEEeCCCCCc-cccccCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccccccccccCc
Q 007330 189 LEKFRHSMLVLGRRASF-PVSIFKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIPKEKEKL 267 (607)
Q Consensus 189 ~~~~r~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp~~~~~l 267 (607)
..+++.+.+.. .+..+ ..++.+|.+|+++.+..+ ...+-...|..+ .|..+.+. ..++.++......
T Consensus 45 ~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~---v~~Ig~~aF~~c-~l~~i~~~-------~~l~~I~~~aF~~ 112 (379)
T 4h09_A 45 RDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST---VTSIGDGAFADT-KLQSYTGM-------ERVKKFGDYVFQG 112 (379)
T ss_dssp GGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT---CCEECTTTTTTC-CCCEEEEC-------TTCCEECTTTTTT
T ss_pred ccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc---ceEechhhhcCC-CCceEECC-------ceeeEeccceecc
Confidence 34577777643 23332 457889999999999765 333345557776 46666664 2355554333333
Q ss_pred ccccEEecCCCCcccCchhhhcCCcccEeecCCCCCcccccc-ccccccCccccc
Q 007330 268 VHLRYLKLSLLMREELPDIVCELFNLQTLEVEHCPRLKRLPQ-GIGKLVNLRHLI 321 (607)
Q Consensus 268 ~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~ 321 (607)
.+|+.+.+..+ +..+....-.-.+|+...+..+ +..+.. .+..+.+++...
T Consensus 113 ~~L~~i~lp~~-~~~i~~~~F~~~~l~~~~~~~~--v~~i~~~~f~~~~~l~~~~ 164 (379)
T 4h09_A 113 TDLDDFEFPGA-TTEIGNYIFYNSSVKRIVIPKS--VTTIKDGIGYKAENLEKIE 164 (379)
T ss_dssp CCCSEEECCTT-CCEECTTTTTTCCCCEEEECTT--CCEECSCTTTTCTTCCEEE
T ss_pred CCcccccCCCc-cccccccccccceeeeeeccce--eeccccchhcccccccccc
Confidence 47888888764 4444433222234555444332 333321 234455555554
No 164
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.21 E-value=0.00032 Score=65.99 Aligned_cols=82 Identities=17% Similarity=0.111 Sum_probs=62.4
Q ss_pred cCCCCeeEEEeeccchhhhhhhhhhhccCCceeEEEecCcccccccccccccccccCcc--cccEEecCCCCcc-cCc--
Q 007330 210 FKAKKLRSLLIHSEFEVSFHVLQGLFDYLTCLRALKITGKVSWGQNSIYAIPKEKEKLV--HLRYLKLSLLMRE-ELP-- 284 (607)
Q Consensus 210 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp~~~~~l~--~L~~L~L~~~~i~-~lp-- 284 (607)
..+++|++|++++|.......++..+..+++|++|+|+ +|.+..+ ..+..+. +|++|+|++|.+. .+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls------~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~ 239 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLS------GNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQ 239 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECT------TSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECC------CCccCCc-hhhhhcccCCcceEEccCCcCccccCcc
Confidence 46889999999999732222345667899999999999 7777766 3345555 9999999999975 344
Q ss_pred -----hhhhcCCcccEeec
Q 007330 285 -----DIVCELFNLQTLEV 298 (607)
Q Consensus 285 -----~~i~~L~~L~~L~L 298 (607)
..+..+++|+.||=
T Consensus 240 ~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 240 STYISAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHHHHHCTTCCEESS
T ss_pred hhHHHHHHHHCcccCeECC
Confidence 23678999999984
No 165
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.70 E-value=0.015 Score=47.91 Aligned_cols=52 Identities=19% Similarity=0.152 Sum_probs=41.9
Q ss_pred EEEecCcccccccccc--cccccccCcccccEEecCCCCcccCchh-hhcCCcccEeecCCCC
Q 007330 243 ALKITGKVSWGQNSIY--AIPKEKEKLVHLRYLKLSLLMREELPDI-VCELFNLQTLEVEHCP 302 (607)
Q Consensus 243 ~L~L~~~~~~~~~~l~--~lp~~~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~ 302 (607)
+++.+ +..++ .+|..+. .+|++|+|++|.|..+|.. +..+++|++|+|++|.
T Consensus 12 ~v~Cs------~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCG------RRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECC------SSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeC------CCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 56666 77777 8886543 5799999999999999876 6788999999999987
No 166
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.73 E-value=0.021 Score=50.63 Aligned_cols=74 Identities=16% Similarity=0.141 Sum_probs=36.8
Q ss_pred hhhhhhhccCCceeEEEecCcccccccccccccccccCcccccEEecCCCCccc-----CchhhhcCCcccEeecCCCC
Q 007330 229 HVLQGLFDYLTCLRALKITGKVSWGQNSIYAIPKEKEKLVHLRYLKLSLLMREE-----LPDIVCELFNLQTLEVEHCP 302 (607)
Q Consensus 229 ~~~~~~~~~l~~L~~L~L~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~-----lp~~i~~L~~L~~L~L~~~~ 302 (607)
..+......-+.|+.|+|+++..++......+...+..-..|+.|+|++|.+.. +.+.+..-+.|++|+|++|.
T Consensus 31 ~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 31 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred HHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 334444455556666666632222222233344444445566666666666532 23334445556666666655
No 167
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.88 E-value=0.068 Score=43.96 Aligned_cols=54 Identities=19% Similarity=0.151 Sum_probs=43.2
Q ss_pred cEEecCCCCcc--cCchhhhcCCcccEeecCCCCCccccccc-cccccCccccccccccc
Q 007330 271 RYLKLSLLMRE--ELPDIVCELFNLQTLEVEHCPRLKRLPQG-IGKLVNLRHLIYYYSNL 327 (607)
Q Consensus 271 ~~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~~~~~~l 327 (607)
..++.++..++ .+|..+ -.+|++|+|++|. ++.+|.+ +..+++|+.|+++.|.+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCc-CCccChhhhhhccccCEEEecCCCe
Confidence 47888888888 888754 3579999999988 8888866 47788999998887754
No 168
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.46 E-value=0.11 Score=46.05 Aligned_cols=111 Identities=11% Similarity=0.047 Sum_probs=68.4
Q ss_pred ccCCCCeeEEEeecc-c--hhhhhhhhhhhccCCceeEEEecCccccccccc-----ccccccccCcccccEEecCCCCc
Q 007330 209 IFKAKKLRSLLIHSE-F--EVSFHVLQGLFDYLTCLRALKITGKVSWGQNSI-----YAIPKEKEKLVHLRYLKLSLLMR 280 (607)
Q Consensus 209 ~~~~~~L~~L~l~~~-~--~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~l-----~~lp~~~~~l~~L~~L~L~~~~i 280 (607)
...-+.|+.|+++++ . ..-...+...+..-..|+.|+|+ ++.+ ..|...+..-+.|+.|+|++|.|
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~------~n~igd~ga~alA~aL~~N~tL~~L~L~~N~I 110 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLA------NTAISDSEARGLIELIETSPSLRVLNVESNFL 110 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECT------TSCCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEcc------CCCCChHHHHHHHHHHhcCCccCeEecCCCcC
Confidence 345677888888775 3 11223355556777889999998 4444 33445555567899999998886
Q ss_pred cc-----CchhhhcCCcccEeecCCCCC--ccc-----cccccccccCccccccccc
Q 007330 281 EE-----LPDIVCELFNLQTLEVEHCPR--LKR-----LPQGIGKLVNLRHLIYYYS 325 (607)
Q Consensus 281 ~~-----lp~~i~~L~~L~~L~L~~~~~--l~~-----lp~~i~~l~~L~~L~~~~~ 325 (607)
+. +-+.+..-+.|++|+|++|.. ++. +-+.+..-+.|+.|+++.+
T Consensus 111 g~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 111 TPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp CHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred CHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 53 333455556788899886531 221 3333444556777765443
No 169
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=77.98 E-value=4.3 Score=39.25 Aligned_cols=122 Identities=15% Similarity=0.030 Sum_probs=67.8
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhhccCCChhHHHHHHhcccccccCcCCCCchHHHHhcccCCChhhHHHhhhhcccCCC
Q 007330 18 YESSKVQQGGVGIKTILHKFGNLLCLRRARKERGSSILDIEMGKLNELENDPLAPLLLSYNDFPPMIKLCFLYCAVFPKG 97 (607)
Q Consensus 18 ~~~~~i~~~c~GlPLal~~~g~~L~~~~~~~~W~~~~~~~~~~~l~~~~~~i~~~L~~SYd~L~~~~k~cfL~~s~fp~~ 97 (607)
+.+.+|++.|+|.|+++..++..+....+...|-..+.+.....+. ..+-.+.++ +...+..+..+|. +
T Consensus 226 ~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~l~~l~~~--~~~~~~~l~~la~---g 294 (350)
T 2qen_A 226 NEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLIM------GELEELRRR--SPRYVDILRAIAL---G 294 (350)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH------HHHHHHHHH--CHHHHHHHHHHHT---T
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHH------HHHHHHHhC--ChhHHHHHHHHHh---C
Confidence 5678899999999999999987654322332331111111000000 011112222 6788999998887 2
Q ss_pred ceeChhHHHHHHHHcCCcccCCCCcHHHHHHHHHHHHHHcCCCcccccCCCCCeeEEEE-CHHHHHHH
Q 007330 98 YNIEKDELIKLWMAQGYIRPIGNKEMEVIGQEYFDYLATRSFFQKFDKDDEDNVTRCKM-SDAVHDFA 164 (607)
Q Consensus 98 ~~i~~~~Li~~wi~~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~m-hdli~~~~ 164 (607)
.++...+........ . +.+ ......+++.|++.+++..... .+.+ |.++++..
T Consensus 295 -~~~~~~l~~~~~~~~-~----~~~-~~~~~~~l~~L~~~gli~~~~~-------~y~~~~p~~~~~~ 348 (350)
T 2qen_A 295 -YNRWSLIRDYLAVKG-T----KIP-EPRLYALLENLKKMNWIVEEDN-------TYKIADPVVATVL 348 (350)
T ss_dssp -CCSHHHHHHHHHHTT-C----CCC-HHHHHHHHHHHHHTTSEEEETT-------EEEESSHHHHHHH
T ss_pred -CCCHHHHHHHHHHHh-C----CCC-HHHHHHHHHHHHhCCCEEecCC-------EEEEecHHHHHHH
Confidence 235555555432211 0 111 2346789999999999976521 2444 55666543
No 170
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=67.33 E-value=11 Score=36.45 Aligned_cols=118 Identities=11% Similarity=-0.047 Sum_probs=67.3
Q ss_pred HHHHhcCCChHHHHHHHHHhhccCCChhHHHHHHhcccccccCcCCCCchHHH-Hhccc--CCChhhHHHhhhhcccCCC
Q 007330 21 SKVQQGGVGIKTILHKFGNLLCLRRARKERGSSILDIEMGKLNELENDPLAPL-LLSYN--DFPPMIKLCFLYCAVFPKG 97 (607)
Q Consensus 21 ~~i~~~c~GlPLal~~~g~~L~~~~~~~~W~~~~~~~~~~~l~~~~~~i~~~L-~~SYd--~L~~~~k~cfL~~s~fp~~ 97 (607)
.+|++.|+|.|+++..++..+....+...|-..+.+.... .+..-+ .+.|+ .|+...+..+..+|+ +
T Consensus 233 ~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~l~~~~~~~l~~la~---g 302 (357)
T 2fna_A 233 EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKK-------LILKEFENFLHGREIARKRYLNIMRTLSK---C 302 (357)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-------HHHHHHHHHHTTCGGGHHHHHHHHHHHTT---C
T ss_pred HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHH-------HHHHHHHHHhhccccccHHHHHHHHHHHc---C
Confidence 7889999999999999998875433444441111111000 011111 12222 577888999999998 2
Q ss_pred ceeChhHHHHHHH-HcCCcccCCCCcHHHHHHHHHHHHHHcCCCcccccCCCCCeeEEE-ECHHHHHH
Q 007330 98 YNIEKDELIKLWM-AQGYIRPIGNKEMEVIGQEYFDYLATRSFFQKFDKDDEDNVTRCK-MSDAVHDF 163 (607)
Q Consensus 98 ~~i~~~~Li~~wi-~~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~-mhdli~~~ 163 (607)
. +...+....- ..|. . .+ ......+++.|++.+++..... .++ .|.++++.
T Consensus 303 ~--~~~~l~~~~~~~~g~--~---~~-~~~~~~~L~~L~~~gli~~~~~-------~y~f~~~~~~~~ 355 (357)
T 2fna_A 303 G--KWSDVKRALELEEGI--E---IS-DSEIYNYLTQLTKHSWIIKEGE-------KYCPSEPLISLA 355 (357)
T ss_dssp B--CHHHHHHHHHHHHCS--C---CC-HHHHHHHHHHHHHTTSEEESSS-------CEEESSHHHHHH
T ss_pred C--CHHHHHHHHHHhcCC--C---CC-HHHHHHHHHHHHhCCCEEecCC-------EEEecCHHHHHh
Confidence 2 4444443221 1121 0 11 2346788999999999976531 245 46777764
No 171
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=49.69 E-value=73 Score=31.13 Aligned_cols=115 Identities=6% Similarity=-0.152 Sum_probs=63.5
Q ss_pred HHHHHHHHhcCC------ChHHHHHHHHH-hhc-----cCC--ChhHHHHHHhcccccccCcCCCCchHHHHhcccCCCh
Q 007330 17 LYESSKVQQGGV------GIKTILHKFGN-LLC-----LRR--ARKERGSSILDIEMGKLNELENDPLAPLLLSYNDFPP 82 (607)
Q Consensus 17 ~~~~~~i~~~c~------GlPLal~~~g~-~L~-----~~~--~~~~W~~~~~~~~~~~l~~~~~~i~~~L~~SYd~L~~ 82 (607)
.+..+.|+++|+ |.|..+..+.. +.. +.. +.+.+ ..+..... . ...+.-+++.||.
T Consensus 239 ~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v-~~~~~~~~----~-----~~~~~~~l~~l~~ 308 (412)
T 1w5s_A 239 PRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLV-RKAVSENE----A-----ASIQTHELEALSI 308 (412)
T ss_dssp HHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHH-HHHHHHC---------------CCSSSSSCH
T ss_pred hHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHH-HHHHHHHh----c-----cchHHHHHHcCCH
Confidence 356778888888 99976554433 221 111 23334 33322110 0 2345567889999
Q ss_pred hhHHHhhhhcccC--CCceeChhHHHHHHH--H-cCCcccCCCCcHHHHHHHHHHHHHHcCCCcccc
Q 007330 83 MIKLCFLYCAVFP--KGYNIEKDELIKLWM--A-QGYIRPIGNKEMEVIGQEYFDYLATRSFFQKFD 144 (607)
Q Consensus 83 ~~k~cfL~~s~fp--~~~~i~~~~Li~~wi--~-~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~~ 144 (607)
..+.++..+|.+. .+..++..++...+. + .- .. ....+ ......++++|++.+++....
T Consensus 309 ~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~-~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 309 HELIILRLIAEATLGGMEWINAGLLRQRYEDASLTM-YN-VKPRG-YTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHH-SC-CCCCC-HHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhh-cC-CCCCC-HHHHHHHHHHHHhCCCEEeec
Confidence 9999999898654 233455666555442 2 11 11 01111 234567899999999997654
No 172
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=41.06 E-value=6.3 Score=37.68 Aligned_cols=109 Identities=9% Similarity=0.013 Sum_probs=54.7
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhhccC------C--ChhHHHHHHhcccccccCcCCCCchHHHHhcccCCChhhHHHhh
Q 007330 18 YESSKVQQGGVGIKTILHKFGNLLCLR------R--ARKERGSSILDIEMGKLNELENDPLAPLLLSYNDFPPMIKLCFL 89 (607)
Q Consensus 18 ~~~~~i~~~c~GlPLal~~~g~~L~~~------~--~~~~W~~~~~~~~~~~l~~~~~~i~~~L~~SYd~L~~~~k~cfL 89 (607)
+..+.++++|+|.|-.+..+...+... . +.+.. ..+. ..+..++..++...+..+.
T Consensus 191 ~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~-~~~~---------------~~~~~~~~~l~~~e~~~i~ 254 (324)
T 1hqc_A 191 EAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERA-LEAL---------------AALGLDELGLEKRDREILE 254 (324)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHH-HHHH---------------HHHTCCTTCCCHHHHHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHH-HHHH---------------HHhcccccCCCHHHHHHHH
Confidence 456677777888887766554433211 0 12222 2222 2223345566666666665
Q ss_pred hhcccCCCc-----------eeChhHHH----HHHHHcCCcccC-CCCcHHHHHHHHHH-HHHHcCCCcc
Q 007330 90 YCAVFPKGY-----------NIEKDELI----KLWMAQGYIRPI-GNKEMEVIGQEYFD-YLATRSFFQK 142 (607)
Q Consensus 90 ~~s~fp~~~-----------~i~~~~Li----~~wi~~g~i~~~-~~~~~~~~~~~~~~-~L~~~~ll~~ 142 (607)
.....-.+. .+++..+. ++-+..|++... .+..+.+.|..+++ ++++|+|+|+
T Consensus 255 ~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 255 VLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp HHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHHHHHTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred HHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 544222221 13333332 345678888643 34667788888887 8888888874
No 173
>2vda_B Maltoporin; sugar transport, protein transport, protein targeting, transmembrane, outer membrane, signal peptide; NMR {Escherichia coli}
Probab=23.19 E-value=54 Score=17.33 Aligned_cols=19 Identities=0% Similarity=-0.036 Sum_probs=15.3
Q ss_pred cCCChHHHHHHHHHhhccC
Q 007330 26 GGVGIKTILHKFGNLLCLR 44 (607)
Q Consensus 26 ~c~GlPLal~~~g~~L~~~ 44 (607)
+-.-||||..+.++.+...
T Consensus 7 krrklplavav~agv~~aq 25 (28)
T 2vda_B 7 KRRKLPLAVAVAAGVMSAQ 25 (28)
T ss_dssp CCCCCTHHHHHHHHTTCCC
T ss_pred ccccCchHHHHHHHHhHhh
Confidence 4457999999999988654
Done!