Query 007331
Match_columns 607
No_of_seqs 162 out of 199
Neff 4.5
Searched_HMMs 46136
Date Thu Mar 28 22:07:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007331.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007331hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4629 Predicted mechanosensi 100.0 1.5E-72 3.1E-77 629.2 30.5 436 102-601 51-488 (714)
2 COG5126 FRQ1 Ca2+-binding prot 96.5 0.0034 7.3E-08 61.0 4.8 58 516-575 55-120 (160)
3 KOG0044 Ca2+ sensor (EF-Hand s 96.2 0.0069 1.5E-07 60.5 5.3 86 514-601 61-154 (193)
4 PF00036 EF-hand_1: EF hand; 95.8 0.0084 1.8E-07 42.4 2.8 26 547-573 1-26 (29)
5 PF13499 EF-hand_7: EF-hand do 95.8 0.01 2.2E-07 47.5 3.6 52 520-572 3-65 (66)
6 cd00052 EH Eps15 homology doma 95.8 0.024 5.2E-07 44.8 5.6 57 520-577 2-63 (67)
7 smart00027 EH Eps15 homology d 94.9 0.084 1.8E-06 46.0 6.8 63 515-578 8-75 (96)
8 KOG0027 Calmodulin and related 94.6 0.057 1.2E-06 50.7 5.2 61 517-578 44-116 (151)
9 cd00213 S-100 S-100: S-100 dom 94.4 0.11 2.3E-06 44.3 6.0 63 514-577 5-81 (88)
10 cd05029 S-100A6 S-100A6: S-100 94.3 0.075 1.6E-06 46.4 4.9 56 520-576 13-80 (88)
11 PTZ00183 centrin; Provisional 94.0 0.12 2.7E-06 47.1 6.0 56 517-573 90-152 (158)
12 PTZ00184 calmodulin; Provision 93.6 0.12 2.5E-06 46.5 5.1 58 518-576 48-113 (149)
13 PTZ00183 centrin; Provisional 93.6 0.15 3.2E-06 46.5 5.9 59 518-577 54-120 (158)
14 cd05025 S-100A1 S-100A1: S-100 93.5 0.21 4.6E-06 43.1 6.3 60 514-574 6-79 (92)
15 cd05026 S-100Z S-100Z: S-100Z 93.4 0.26 5.6E-06 43.2 6.6 61 513-574 6-80 (93)
16 PRK12309 transaldolase/EF-hand 93.3 0.14 3E-06 56.2 5.9 63 509-578 326-388 (391)
17 cd00051 EFh EF-hand, calcium b 93.2 0.16 3.5E-06 37.7 4.5 52 520-572 3-61 (63)
18 KOG0028 Ca2+-binding protein ( 93.1 0.12 2.6E-06 50.6 4.5 52 520-572 72-131 (172)
19 PF13405 EF-hand_6: EF-hand do 93.0 0.087 1.9E-06 37.0 2.5 27 547-574 1-27 (31)
20 PTZ00184 calmodulin; Provision 92.7 0.2 4.4E-06 44.9 5.2 57 517-574 84-147 (149)
21 PLN02964 phosphatidylserine de 92.5 0.2 4.3E-06 58.3 5.9 59 516-575 178-243 (644)
22 cd05022 S-100A13 S-100A13: S-1 92.3 0.32 7E-06 42.8 5.7 61 514-575 5-75 (89)
23 cd05023 S-100A11 S-100A11: S-1 92.3 0.33 7.2E-06 42.5 5.7 61 515-576 7-81 (89)
24 KOG0034 Ca2+/calmodulin-depend 92.2 0.25 5.5E-06 49.2 5.5 60 515-575 64-132 (187)
25 PF13833 EF-hand_8: EF-hand do 91.8 0.27 5.8E-06 38.1 4.1 42 532-574 3-52 (54)
26 PF13202 EF-hand_5: EF hand; P 91.5 0.15 3.3E-06 34.8 2.2 22 549-571 2-23 (25)
27 cd05030 calgranulins Calgranul 91.4 0.54 1.2E-05 40.8 6.0 62 514-576 5-80 (88)
28 cd05031 S-100A10_like S-100A10 90.5 0.64 1.4E-05 40.4 5.7 58 514-572 5-76 (94)
29 cd05026 S-100Z S-100Z: S-100Z 89.2 0.45 9.8E-06 41.7 3.7 51 546-597 10-63 (93)
30 cd05025 S-100A1 S-100A1: S-100 87.7 0.71 1.5E-05 39.9 4.0 27 546-573 9-37 (92)
31 PF13499 EF-hand_7: EF-hand do 87.7 0.35 7.6E-06 38.6 1.9 30 548-578 2-31 (66)
32 cd05027 S-100B S-100B: S-100B 86.6 1.8 3.9E-05 37.9 5.8 60 515-575 6-79 (88)
33 smart00054 EFh EF-hand, calciu 84.0 0.89 1.9E-05 28.6 2.1 27 547-574 1-27 (29)
34 cd00213 S-100 S-100: S-100 dom 83.3 1.5 3.3E-05 37.2 3.8 28 546-574 8-37 (88)
35 KOG0027 Calmodulin and related 82.9 2 4.2E-05 40.4 4.7 80 517-597 8-95 (151)
36 cd05031 S-100A10_like S-100A10 82.7 1.8 3.9E-05 37.6 4.1 51 546-597 8-61 (94)
37 cd00252 SPARC_EC SPARC_EC; ext 82.2 3.5 7.6E-05 38.1 6.0 59 514-573 45-106 (116)
38 cd05022 S-100A13 S-100A13: S-1 81.5 1.9 4E-05 38.0 3.8 47 547-597 9-57 (89)
39 PF09279 EF-hand_like: Phospho 79.9 2.3 5E-05 35.9 3.7 54 520-574 3-68 (83)
40 PRK11281 hypothetical protein; 79.6 4.3 9.2E-05 50.4 7.2 72 235-313 810-898 (1113)
41 cd05027 S-100B S-100B: S-100B 79.3 2.3 4.9E-05 37.2 3.6 28 547-575 9-38 (88)
42 PF10329 DUF2417: Region of un 77.7 29 0.00063 36.1 11.5 22 325-346 177-198 (232)
43 COG5126 FRQ1 Ca2+-binding prot 77.1 2.9 6.2E-05 41.0 3.9 54 519-573 94-154 (160)
44 cd00052 EH Eps15 homology doma 76.6 2.2 4.7E-05 33.5 2.5 26 549-575 2-27 (67)
45 KOG0034 Ca2+/calmodulin-depend 73.2 4.7 0.0001 40.3 4.4 57 518-575 105-175 (187)
46 smart00027 EH Eps15 homology d 72.8 2.8 6.2E-05 36.4 2.5 28 546-574 10-37 (96)
47 KOG0253 Synaptic vesicle trans 71.5 14 0.0003 41.6 7.8 41 241-281 105-145 (528)
48 cd00252 SPARC_EC SPARC_EC; ext 69.9 4.2 9.1E-05 37.6 3.0 28 544-572 46-73 (116)
49 PRK11465 putative mechanosensi 69.8 53 0.0011 39.5 12.5 60 289-349 426-486 (741)
50 KOG2643 Ca2+ binding protein, 66.4 3.1 6.7E-05 46.6 1.6 32 545-578 232-263 (489)
51 cd00051 EFh EF-hand, calcium b 62.8 7.1 0.00015 28.7 2.6 28 548-576 2-29 (63)
52 PRK10929 putative mechanosensi 61.6 20 0.00043 44.8 7.3 76 235-313 807-895 (1109)
53 COG3071 HemY Uncharacterized e 56.2 65 0.0014 36.1 9.3 52 329-380 41-92 (400)
54 KOG3088 Secretory carrier memb 55.7 19 0.0004 38.7 5.0 57 200-262 121-180 (313)
55 PF07290 DUF1449: Protein of u 53.6 22 0.00047 36.2 4.9 40 242-281 89-128 (202)
56 KOG0044 Ca2+ sensor (EF-Hand s 53.4 27 0.00058 35.3 5.5 55 516-571 25-88 (193)
57 KOG3966 p53-mediated apoptosis 51.6 2E+02 0.0043 31.2 11.6 120 212-358 95-217 (360)
58 PLN02964 phosphatidylserine de 51.4 22 0.00048 41.9 5.2 54 519-574 145-206 (644)
59 KOG3817 Uncharacterized conser 50.0 27 0.00059 38.6 5.2 56 304-359 232-291 (452)
60 PTZ00265 multidrug resistance 48.8 2.3E+02 0.0049 36.8 13.7 35 248-282 96-130 (1466)
61 PRK10263 DNA translocase FtsK; 47.9 4.4E+02 0.0094 34.2 15.4 12 360-371 183-194 (1355)
62 COG3336 Predicted membrane pro 43.7 2.8E+02 0.0061 30.1 11.4 54 295-352 159-212 (299)
63 PF06570 DUF1129: Protein of u 40.5 75 0.0016 31.7 6.4 22 257-278 115-136 (206)
64 PF15300 INT_SG_DDX_CT_C: INTS 40.1 45 0.00097 28.4 4.0 56 518-588 7-64 (65)
65 PF10953 DUF2754: Protein of u 39.5 54 0.0012 27.7 4.2 40 211-251 9-48 (70)
66 COG4988 CydD ABC-type transpor 38.0 6E+02 0.013 30.0 13.7 60 214-274 5-65 (559)
67 KOG0031 Myosin regulatory ligh 37.7 34 0.00073 33.9 3.3 32 544-576 99-130 (171)
68 PRK10747 putative protoheme IX 37.3 82 0.0018 34.2 6.6 32 244-275 37-68 (398)
69 PRK12309 transaldolase/EF-hand 37.3 35 0.00076 37.9 3.8 25 545-570 333-357 (391)
70 PF08044 DUF1707: Domain of un 36.9 74 0.0016 25.8 4.6 44 545-588 5-51 (53)
71 KOG0036 Predicted mitochondria 36.6 49 0.0011 37.3 4.7 60 516-576 50-111 (463)
72 PF08726 EFhand_Ca_insen: Ca2+ 36.5 15 0.00032 31.4 0.6 34 522-556 11-44 (69)
73 PF02674 Colicin_V: Colicin V 35.0 3.6E+02 0.0078 24.7 12.3 33 248-280 21-53 (146)
74 TIGR01193 bacteriocin_ABC ABC- 34.7 6.9E+02 0.015 29.4 14.0 28 248-275 195-222 (708)
75 TIGR01299 synapt_SV2 synaptic 34.5 3.1E+02 0.0067 33.0 11.2 27 33-60 18-44 (742)
76 PF05552 TM_helix: Conserved T 34.0 40 0.00086 26.7 2.7 27 252-278 19-45 (53)
77 TIGR00056 conserved hypothetic 33.7 1.8E+02 0.0038 30.8 8.1 86 210-316 139-224 (259)
78 COG2456 Uncharacterized conser 33.5 85 0.0018 29.5 5.0 84 213-315 7-90 (121)
79 PLN03100 Permease subunit of E 33.4 1.6E+02 0.0034 31.8 7.8 86 210-316 172-257 (292)
80 TIGR00845 caca sodium/calcium 33.1 62 0.0013 39.8 5.2 24 249-272 754-777 (928)
81 PF02609 Exonuc_VII_S: Exonucl 33.0 1.1E+02 0.0024 24.3 5.0 40 557-596 13-53 (53)
82 PF14812 PBP1_TM: Transmembran 32.5 3.8 8.3E-05 36.1 -3.6 8 198-205 49-56 (81)
83 PF11712 Vma12: Endoplasmic re 31.6 95 0.0021 29.4 5.2 26 326-351 106-131 (142)
84 TIGR00954 3a01203 Peroxysomal 31.1 8.3E+02 0.018 28.8 13.8 37 348-384 253-289 (659)
85 cd05029 S-100A6 S-100A6: S-100 31.0 41 0.00089 29.4 2.5 47 549-597 13-61 (88)
86 PF05975 EcsB: Bacterial ABC t 30.8 2.8E+02 0.006 30.3 9.4 29 288-316 96-126 (386)
87 TIGR00834 ae anion exchange pr 30.6 4.1E+02 0.0088 33.1 11.4 137 212-363 370-519 (900)
88 PF14965 BRI3BP: Negative regu 30.2 2.1E+02 0.0044 28.9 7.4 29 253-281 78-106 (177)
89 PF12763 EF-hand_4: Cytoskelet 29.4 91 0.002 28.4 4.5 57 520-578 13-74 (104)
90 PF06687 SUR7: SUR7/PalI famil 29.0 4.5E+02 0.0098 25.6 9.7 25 289-313 187-211 (212)
91 PF02405 Permease: Permease; 28.8 4.9E+02 0.011 26.5 10.1 87 210-317 98-184 (215)
92 PLN02915 cellulose synthase A 27.4 77 0.0017 39.5 4.7 49 259-316 976-1024(1044)
93 COG3846 TrbL Type IV secretory 27.3 2.7E+02 0.0059 31.9 8.5 80 299-379 224-308 (452)
94 KOG4812 Golgi-associated prote 25.8 1.2E+02 0.0026 32.1 5.1 18 191-208 140-157 (262)
95 PRK10789 putative multidrug tr 25.8 1E+03 0.023 27.2 14.1 34 247-280 34-67 (569)
96 COG3090 DctM TRAP-type C4-dica 25.7 4.1E+02 0.0089 26.2 8.7 44 239-282 42-85 (177)
97 PLN02248 cellulose synthase-li 25.4 1.4E+02 0.0031 37.5 6.5 23 294-316 1096-1118(1135)
98 KOG2296 Integral membrane prot 25.4 1.2E+03 0.027 27.9 13.8 22 246-268 94-115 (673)
99 TIGR00869 sec62 protein transl 25.2 1.1E+02 0.0025 31.8 4.9 62 217-281 118-179 (232)
100 TIGR00540 hemY_coli hemY prote 25.0 1.8E+02 0.004 31.6 6.7 33 244-276 37-69 (409)
101 PF10762 DUF2583: Protein of u 24.4 56 0.0012 29.3 2.1 18 330-347 43-60 (89)
102 PF04144 SCAMP: SCAMP family; 24.3 7E+02 0.015 24.6 10.6 19 335-353 146-164 (177)
103 TIGR02675 tape_meas_nterm tape 24.3 2.3E+02 0.0049 24.2 5.8 55 544-601 11-66 (75)
104 KOG3130 Uncharacterized conser 24.1 40 0.00086 37.8 1.4 11 175-185 252-262 (514)
105 COG4473 EcsB Predicted ABC-typ 24.0 3.3E+02 0.0072 30.5 8.3 102 206-315 14-127 (379)
106 TIGR02865 spore_II_E stage II 23.9 7E+02 0.015 30.2 11.7 45 214-263 148-192 (764)
107 PF03552 Cellulose_synt: Cellu 23.6 1.4E+02 0.003 35.9 5.8 47 261-316 660-706 (720)
108 PF12174 RST: RCD1-SRO-TAF4 (R 23.3 1.5E+02 0.0033 25.3 4.5 48 528-576 3-54 (70)
109 PRK11281 hypothetical protein; 23.0 1.4E+03 0.03 29.3 14.3 15 30-44 335-349 (1113)
110 PLN02400 cellulose synthase 22.8 2.3E+02 0.005 35.7 7.5 92 192-313 966-1061(1085)
111 PRK10692 hypothetical protein; 22.3 65 0.0014 29.1 2.1 19 329-347 42-60 (92)
112 PF14821 Thr_synth_N: Threonin 22.2 1.8E+02 0.0039 25.0 4.9 59 518-577 14-79 (79)
113 PF10225 DUF2215: Uncharacteri 21.6 9.4E+02 0.02 25.1 10.9 24 325-348 128-151 (249)
114 PF14752 RBP_receptor: Retinol 21.2 2.2E+02 0.0047 33.8 6.7 34 214-247 390-423 (617)
115 TIGR01280 xseB exodeoxyribonuc 20.7 3.3E+02 0.0071 23.0 5.9 53 546-598 4-57 (67)
116 KOG0031 Myosin regulatory ligh 20.1 84 0.0018 31.3 2.6 32 546-578 32-63 (171)
117 PF03303 WTF: WTF protein; In 20.1 1.1E+03 0.023 25.2 10.7 16 343-358 224-239 (247)
No 1
>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=1.5e-72 Score=629.19 Aligned_cols=436 Identities=45% Similarity=0.720 Sum_probs=381.9
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCeeeecCCccccccccccccccccccccccccCCCCCCCCCCCCCcccCCccccc
Q 007331 102 ESLKRRHSNSTNNNYKDSPQKDSEGEVVKCTSNKSFDRNVSFNKKSALLMTKTKSRLMDLPPERIEPKSGRVVGRSGQLK 181 (607)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~k~~srl~~~~~~~~~~~~~~~~~~s~~~~ 181 (607)
+.+|++..+..... .+..+-.+.+++++||+.... +...+.+++||++|||-+. .+ +++ |++|+..
T Consensus 51 ~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~t~~~~~---------~~~~~~~~~s~~f~p~~~~-~~--n~~-~~~~~~~ 116 (714)
T KOG4629|consen 51 GRVRRRSLPYILYS-QEELRRTEYGETVRCTSRKMP---------SMIFFASKRSRDFDPAEPN-NR--NRF-SNSGETT 116 (714)
T ss_pred chhhhccccceecc-cccccccCCcceEEeccccCh---------HhhhhhhhcccccCCCCCC-CC--Ccc-cCccccc
Confidence 55555555443332 223334577899999997443 4678889999999977222 11 565 7899999
Q ss_pred ccCCCCCCCCccCCcCCCCCCchHHhhcccchhhHHHHHHHHHHHHHHhhheeecccCcceeeehhHHHHHHHHHHHHHH
Q 007331 182 SGFIGKNVDEEEEDPLLEEDLPEEYKKEKISIWVLLEWFSLILIIGALVCSLTIDYFKKKKLWKLGLWKWELLILVLICG 261 (607)
Q Consensus 182 sg~~~~~~~eeddd~~~d~d~p~~~kk~k~~~~~~iewv~lilil~~LV~sLti~~l~~~~lw~l~LWkW~v~~lVli~G 261 (607)
+|..+...+|+|++++..+++|+++++.+..++++|+|+.+++++++++|+|+++......+|.+..|+|++.++|++||
T Consensus 117 s~~~a~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~i~~I~~~~iv~~lv~~l~i~~~~~~~~~~~~~~kw~~~~~v~~~~ 196 (714)
T KOG4629|consen 117 SGELAPSEKDEEESIFSEEKLPDETRRSLLSSITVITWILLVLIVSSLVCSLGIHVHRLVTLWSLILWKWLVTLLVRITA 196 (714)
T ss_pred cccccCCcccccccccchhccchhhhhcccccHHHHHHHHHHHHHHHHHhhhhhheecccceEEEEeeeehhhhHHHHHH
Confidence 99999987789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhchhhhhhhhhhhhhhhheeeeehhhhhhHHHHHHH-HHHHHHHHhhccccccccchhHHHHHHHHHHHHHHH
Q 007331 262 RLVSSWIVRIIVFCIERNFLLRKRVLYFVYGVRKAVQNCLWLG-LVLIAWHCLFDQRVERETNSDVLKYATKILICLWVG 340 (607)
Q Consensus 262 rlVS~WvvrlvV~lIernFllrkrVLYfVygLrk~v~~flWl~-lvLiaw~~Lf~~~v~r~t~t~~l~~VtKVLi~llV~ 340 (607)
++++.|.+.++||+++.||++|++++|||||+++.+|+|+|++ +++++|+.+|+..+++.+..+.+.+++++ +|+++.
T Consensus 197 ~lv~~~~~~~vvf~~~~n~~~r~~~l~~v~~~~~~vq~~~~l~~lv~law~~l~d~~v~~~~r~~~l~~~~~~-i~lli~ 275 (714)
T KOG4629|consen 197 VLVSSWFAALVVFLIESNFLRRKKVLYFVYGLRKFVQTGIWLGKLVLLAWIFLFDKIVFRKTRAKFLAFVTML-ITLLIT 275 (714)
T ss_pred HHHHhhHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhh-hhhhHH
Confidence 9999999999999999999999999999999999999999999 99999999999999888777789999999 999999
Q ss_pred HHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHhHHHHHHhcCCCchhhhhhhHHHHHHHHHHHHhhhCCCCCCCCCCCCc
Q 007331 341 VMLWLVKTLLVKVLASSFHVSTYFDRIQEALFNQYLIETLSGPPLIEIQKAEEEQERIVSEVQKLQNAGVTIPPGLKSSV 420 (607)
Q Consensus 341 a~l~LvKklLVKlIAsSFH~rtYfDRIqESkf~qyvL~tLsgppl~e~~~~~~Ede~i~~ev~~l~~aG~~~P~~l~~s~ 420 (607)
++.|++||+++|+||++||+++|++||||++|+||+|++|||||+. |+ +|+..++..
T Consensus 276 ~~~~lv~ti~~kv~as~f~~s~~~~rI~e~~f~q~~l~~Lsg~p~~-------e~------------~gr~s~~~~---- 332 (714)
T KOG4629|consen 276 EFMWLVKTILMKVIASSFHRSTYFSRIQESVFTQEVLETLSGPPRE-------ED------------VGRESTFRA---- 332 (714)
T ss_pred HHHhhchhhhhHHHHHHHhHHHHHhhcchhhhhHHHHHHhcCCccc-------cc------------cccccccee----
Confidence 9999999999999999999999999999999999999999999982 21 344322111
Q ss_pred CCCcccccccCCCCcccCCCCCCCCccccccCCCCCCCcchhhhhhcCCCccchhhhhhhhhhhhccccchhhHHhhhcc
Q 007331 421 LSSPQSAKVIGSGRLQRTPREGKSPKLSHTFSNKDDDGITIDHLHKLNPKNVSAWNMKRLMNIIRHGSLTTLDEQIQDST 500 (607)
Q Consensus 421 ~p~~~~~~~~~sGrls~~~~~gks~~l~r~~~~k~~~~I~~~~L~kl~~~nVSAwtmKrl~~~vR~s~LSTls~~l~~a~ 500 (607)
+.++...|.. ..+|+++++|+++..+++||+|+++|+.++.+++++++.+++.+.
T Consensus 333 ---------------------~~s~~~~r~~----s~~i~~~~l~~~~~~~~sa~~~~~~~~~~~~~~~t~l~~~~~~s~ 387 (714)
T KOG4629|consen 333 ---------------------IFSPGLSRSG----SAKIGMDKLHKIKKKNVSAWNMRRLMTILAAGGLTTLSPGFQLST 387 (714)
T ss_pred ---------------------eccccccchh----hcccccchhhhhhHhhhcHhhhhHHHHHHhccCcccCCccccccc
Confidence 0111111111 122889999999999999999999999999999999999987765
Q ss_pred CcCCcccccCCHHHHHHHHHHHHHhhcCCCCCccchhhhhccCCHHHHHHHhhhhhhccccCCcCHHHHHHHHHHHHH-H
Q 007331 501 NEDESAPHIKTEYEAKAAARKIFQNVAKPGSKFIYLEDLMRFLNEDEASKTMSLFEEASERKKISKSALKNWVVRIWQ-R 579 (607)
Q Consensus 501 ~~~e~~~eI~Se~eAkalARrIF~nvakpG~~yI~ldDL~rF~~eeEAe~aF~lFD~d~~NGdISk~eL~~wVV~iyr-R 579 (607)
.++....+|+|+.+|+++|++||+|+++||..||++||+++|+++|||+.+|++||+..+++ |||+++++|++++|+ |
T Consensus 388 ~~~~~~~~i~s~~~a~~aA~~iF~nv~~p~~~~i~ld~~~~f~~~E~a~~~~slfe~~~~~~-Itrs~~~~~iv~~~~ER 466 (714)
T KOG4629|consen 388 SKDSSIIEIRSEKEAKIAARKIFKNVAKPGVILIDLDDLLRFMGDEEAERAFSLFEGASDEN-ITRSSFKEWIVNIYRER 466 (714)
T ss_pred cccchhhhhhhhhhHHHHHHHHHhccCCCCccchhhhhhhhcCCHHHHHHHHHhhhhhcccC-ccHHHHHHHHHHHHHHH
Confidence 45567789999999999999999999999999999999999999999999999999986666 999999999999999 9
Q ss_pred HHHhhhccchhHHHHHHHHHHh
Q 007331 580 MAFSMRVDITKSLFLAIYCLLE 601 (607)
Q Consensus 580 KALA~SLkDtktAV~kLD~vl~ 601 (607)
|+||++|+|++|||+|||.+|.
T Consensus 467 k~L~~tL~d~~taV~kL~~il~ 488 (714)
T KOG4629|consen 467 KALARTLNDTKTAVNKLDRILN 488 (714)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999986
No 2
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=96.49 E-value=0.0034 Score=61.01 Aligned_cols=58 Identities=19% Similarity=0.420 Sum_probs=52.0
Q ss_pred HHHHHHHHHhhcCCCCCccchhhhhccCC--------HHHHHHHhhhhhhccccCCcCHHHHHHHHHH
Q 007331 516 KAAARKIFQNVAKPGSKFIYLEDLMRFLN--------EDEASKTMSLFEEASERKKISKSALKNWVVR 575 (607)
Q Consensus 516 kalARrIF~nvakpG~~yI~ldDL~rF~~--------eeEAe~aF~lFD~d~~NGdISk~eL~~wVV~ 575 (607)
.+.+.+||..+-. |.++|..++|+.+|+ +||...||.+||.| ++|.||..||+.++-+
T Consensus 55 ~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d-~dG~Is~~eL~~vl~~ 120 (160)
T COG5126 55 EAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKD-HDGYISIGELRRVLKS 120 (160)
T ss_pred HHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCCC-CCceecHHHHHHHHHh
Confidence 6778899999999 999999999987763 78999999999999 8999999999997753
No 3
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=96.21 E-value=0.0069 Score=60.47 Aligned_cols=86 Identities=14% Similarity=0.143 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHhhcCCCCCccchhhhhcc----CC---HHHHHHHhhhhhhccccCCcCHHHHHHHHHHHHH-HHHHhhh
Q 007331 514 EAKAAARKIFQNVAKPGSKFIYLEDLMRF----LN---EDEASKTMSLFEEASERKKISKSALKNWVVRIWQ-RMAFSMR 585 (607)
Q Consensus 514 eAkalARrIF~nvakpG~~yI~ldDL~rF----~~---eeEAe~aF~lFD~d~~NGdISk~eL~~wVV~iyr-RKALA~S 585 (607)
.|...|+++|+.|...+..+|.-.||.+= .+ +|-..=||.++|.| +||-||++||-+-|-.+|. =...+..
T Consensus 61 d~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~d-gdG~It~~Eml~iv~~i~~m~~~~~~~ 139 (193)
T KOG0044|consen 61 DASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLD-GDGYITKEEMLKIVQAIYQMTGSKALP 139 (193)
T ss_pred CHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCC-CCceEcHHHHHHHHHHHHHHcccccCC
Confidence 37899999999999999999999997642 22 55588899999999 9999999999999999998 4445555
Q ss_pred ccchhHHHHHHHHHHh
Q 007331 586 VDITKSLFLAIYCLLE 601 (607)
Q Consensus 586 LkDtktAV~kLD~vl~ 601 (607)
.|..++-..-|.||.
T Consensus 140 -~~~~~~~~~v~~if~ 154 (193)
T KOG0044|consen 140 -EDEETPEERVDKIFS 154 (193)
T ss_pred -cccccHHHHHHHHHH
Confidence 667777777777764
No 4
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=95.81 E-value=0.0084 Score=42.39 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=23.8
Q ss_pred HHHHHhhhhhhccccCCcCHHHHHHHH
Q 007331 547 EASKTMSLFEEASERKKISKSALKNWV 573 (607)
Q Consensus 547 EAe~aF~lFD~d~~NGdISk~eL~~wV 573 (607)
|++++|..||+| ++|.||.+|++..+
T Consensus 1 E~~~~F~~~D~d-~dG~I~~~Ef~~~~ 26 (29)
T PF00036_consen 1 ELKEAFREFDKD-GDGKIDFEEFKEMM 26 (29)
T ss_dssp HHHHHHHHHSTT-SSSEEEHHHHHHHH
T ss_pred CHHHHHHHHCCC-CCCcCCHHHHHHHH
Confidence 688999999999 89999999999854
No 5
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=95.80 E-value=0.01 Score=47.54 Aligned_cols=52 Identities=23% Similarity=0.416 Sum_probs=44.2
Q ss_pred HHHHHhhcCCCCCccchhhhhccCC-------H----HHHHHHhhhhhhccccCCcCHHHHHHH
Q 007331 520 RKIFQNVAKPGSKFIYLEDLMRFLN-------E----DEASKTMSLFEEASERKKISKSALKNW 572 (607)
Q Consensus 520 RrIF~nvakpG~~yI~ldDL~rF~~-------e----eEAe~aF~lFD~d~~NGdISk~eL~~w 572 (607)
+++|+-+-..+..||..+||..++. + ++++..|..+|.+ ++|.||.+|+.++
T Consensus 3 ~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d-~dG~i~~~Ef~~~ 65 (66)
T PF13499_consen 3 KEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTD-GDGRISFDEFLNF 65 (66)
T ss_dssp HHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTT-SSSSEEHHHHHHH
T ss_pred HHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCC-CcCCCcHHHHhcc
Confidence 6799999999999999999986542 3 3566669999999 8999999999875
No 6
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=95.76 E-value=0.024 Score=44.83 Aligned_cols=57 Identities=18% Similarity=0.225 Sum_probs=48.7
Q ss_pred HHHHHhhcCCCCCccchhhhhccC-----CHHHHHHHhhhhhhccccCCcCHHHHHHHHHHHH
Q 007331 520 RKIFQNVAKPGSKFIYLEDLMRFL-----NEDEASKTMSLFEEASERKKISKSALKNWVVRIW 577 (607)
Q Consensus 520 RrIF~nvakpG~~yI~ldDL~rF~-----~eeEAe~aF~lFD~d~~NGdISk~eL~~wVV~iy 577 (607)
+++|..+...+..+|..++|..++ +++++++.|..||.+ ++|.|+-+|+...+..++
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~i~~~~d~~-~~g~i~~~ef~~~~~~~~ 63 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGLPRSVLAQIWDLADTD-KDGKLDKEEFAIAMHLIA 63 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHhcCC-CCCcCCHHHHHHHHHHHH
Confidence 568999999999999999998765 578899999999988 799999999988665443
No 7
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=94.93 E-value=0.084 Score=45.98 Aligned_cols=63 Identities=16% Similarity=0.154 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhhcCCCCCccchhhhhccC-----CHHHHHHHhhhhhhccccCCcCHHHHHHHHHHHHH
Q 007331 515 AKAAARKIFQNVAKPGSKFIYLEDLMRFL-----NEDEASKTMSLFEEASERKKISKSALKNWVVRIWQ 578 (607)
Q Consensus 515 AkalARrIF~nvakpG~~yI~ldDL~rF~-----~eeEAe~aF~lFD~d~~NGdISk~eL~~wVV~iyr 578 (607)
-..-.+.+|..+.+.+..+|..+||.++| +++++++.|..+|.+ .+|.|+.+|+...+..+++
T Consensus 8 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~ev~~i~~~~d~~-~~g~I~~~eF~~~~~~~~~ 75 (96)
T smart00027 8 DKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTLLAKIWNLADID-NDGELDKDEFALAMHLIYR 75 (96)
T ss_pred HHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCCHHHHHHHHHHhcCC-CCCCcCHHHHHHHHHHHHH
Confidence 34567889999999999999999998754 578999999999988 7999999999998777776
No 8
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=94.60 E-value=0.057 Score=50.66 Aligned_cols=61 Identities=18% Similarity=0.355 Sum_probs=48.9
Q ss_pred HHHHHHHHhhcCCCCCccchhhhhccCC------------HHHHHHHhhhhhhccccCCcCHHHHHHHHHHHHH
Q 007331 517 AAARKIFQNVAKPGSKFIYLEDLMRFLN------------EDEASKTMSLFEEASERKKISKSALKNWVVRIWQ 578 (607)
Q Consensus 517 alARrIF~nvakpG~~yI~ldDL~rF~~------------eeEAe~aF~lFD~d~~NGdISk~eL~~wVV~iyr 578 (607)
.-.+.++..+...|..+|..++|...|. .+|..+||.+||.| ++|-||.+||+..+.+.+-
T Consensus 44 ~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d-~~G~Is~~el~~~l~~lg~ 116 (151)
T KOG0027|consen 44 EELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKD-GDGFISASELKKVLTSLGE 116 (151)
T ss_pred HHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccC-CCCcCcHHHHHHHHHHhCC
Confidence 3345677777888999999999886553 34899999999999 8999999999996665544
No 9
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=94.38 E-value=0.11 Score=44.31 Aligned_cols=63 Identities=11% Similarity=0.170 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhhcC--CCCCccchhhhhccC------------CHHHHHHHhhhhhhccccCCcCHHHHHHHHHHHH
Q 007331 514 EAKAAARKIFQNVAK--PGSKFIYLEDLMRFL------------NEDEASKTMSLFEEASERKKISKSALKNWVVRIW 577 (607)
Q Consensus 514 eAkalARrIF~nvak--pG~~yI~ldDL~rF~------------~eeEAe~aF~lFD~d~~NGdISk~eL~~wVV~iy 577 (607)
+...-.+.+|+.+.+ .|..+|..++|..++ +++++++.|..||.+ ++|.|+-+++...+....
T Consensus 5 ~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~-~~g~I~f~eF~~~~~~~~ 81 (88)
T cd00213 5 KAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVN-KDGKVDFQEFLVLIGKLA 81 (88)
T ss_pred HHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccC-CCCcCcHHHHHHHHHHHH
Confidence 345568889999999 799999999988654 168899999999988 799999999988776543
No 10
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=94.27 E-value=0.075 Score=46.40 Aligned_cols=56 Identities=13% Similarity=0.279 Sum_probs=47.4
Q ss_pred HHHHHhhcC-CC-CCccchhhhhccC----------CHHHHHHHhhhhhhccccCCcCHHHHHHHHHHH
Q 007331 520 RKIFQNVAK-PG-SKFIYLEDLMRFL----------NEDEASKTMSLFEEASERKKISKSALKNWVVRI 576 (607)
Q Consensus 520 RrIF~nvak-pG-~~yI~ldDL~rF~----------~eeEAe~aF~lFD~d~~NGdISk~eL~~wVV~i 576 (607)
=.||+.++. .| ..||..++|..++ +++|+++.|.-+|.+ ++|.|+-+|+...+..+
T Consensus 13 i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d-~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 13 VAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRN-KDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCC-CCCCCcHHHHHHHHHHH
Confidence 468999998 67 7799999988655 478999999999999 79999999998766654
No 11
>PTZ00183 centrin; Provisional
Probab=94.01 E-value=0.12 Score=47.07 Aligned_cols=56 Identities=16% Similarity=0.220 Sum_probs=48.5
Q ss_pred HHHHHHHHhhcCCCCCccchhhhhcc-------CCHHHHHHHhhhhhhccccCCcCHHHHHHHH
Q 007331 517 AAARKIFQNVAKPGSKFIYLEDLMRF-------LNEDEASKTMSLFEEASERKKISKSALKNWV 573 (607)
Q Consensus 517 alARrIF~nvakpG~~yI~ldDL~rF-------~~eeEAe~aF~lFD~d~~NGdISk~eL~~wV 573 (607)
...+.+|..+...+..+|..+||..+ +++++++..|..||.+ ++|.|+.+++.+-+
T Consensus 90 ~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~-~~g~i~~~ef~~~~ 152 (158)
T PTZ00183 90 EEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRN-GDGEISEEEFYRIM 152 (158)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCC-CCCcCcHHHHHHHH
Confidence 44689999999999999999999865 5688999999999988 79999999998743
No 12
>PTZ00184 calmodulin; Provisional
Probab=93.65 E-value=0.12 Score=46.46 Aligned_cols=58 Identities=16% Similarity=0.363 Sum_probs=45.6
Q ss_pred HHHHHHHhhcCCCCCccchhhhhccCC--------HHHHHHHhhhhhhccccCCcCHHHHHHHHHHH
Q 007331 518 AARKIFQNVAKPGSKFIYLEDLMRFLN--------EDEASKTMSLFEEASERKKISKSALKNWVVRI 576 (607)
Q Consensus 518 lARrIF~nvakpG~~yI~ldDL~rF~~--------eeEAe~aF~lFD~d~~NGdISk~eL~~wVV~i 576 (607)
..+++|.-+..++..+|..+++.+++. ++.+..+|..||.+ ++|.|+++++..++..+
T Consensus 48 ~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~-~~g~i~~~e~~~~l~~~ 113 (149)
T PTZ00184 48 ELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRD-GNGFISAAELRHVMTNL 113 (149)
T ss_pred HHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCC-CCCeEeHHHHHHHHHHH
Confidence 457788888888888888888886442 35688899999988 78999999998877554
No 13
>PTZ00183 centrin; Provisional
Probab=93.64 E-value=0.15 Score=46.54 Aligned_cols=59 Identities=25% Similarity=0.399 Sum_probs=49.4
Q ss_pred HHHHHHHhhcCCCCCccchhhhhccC--------CHHHHHHHhhhhhhccccCCcCHHHHHHHHHHHH
Q 007331 518 AARKIFQNVAKPGSKFIYLEDLMRFL--------NEDEASKTMSLFEEASERKKISKSALKNWVVRIW 577 (607)
Q Consensus 518 lARrIF~nvakpG~~yI~ldDL~rF~--------~eeEAe~aF~lFD~d~~NGdISk~eL~~wVV~iy 577 (607)
.+..+|..+...+...|..+++..++ .+++.+++|.+||.+ ++|.|+++|+.+++....
T Consensus 54 ~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~-~~G~i~~~e~~~~l~~~~ 120 (158)
T PTZ00183 54 EIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDD-KTGKISLKNLKRVAKELG 120 (158)
T ss_pred HHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCC-CCCcCcHHHHHHHHHHhC
Confidence 46788998988898889999887543 356799999999999 899999999999887553
No 14
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=93.54 E-value=0.21 Score=43.12 Aligned_cols=60 Identities=20% Similarity=0.324 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhhc-CCCCCc-cchhhhhccC------------CHHHHHHHhhhhhhccccCCcCHHHHHHHHH
Q 007331 514 EAKAAARKIFQNVA-KPGSKF-IYLEDLMRFL------------NEDEASKTMSLFEEASERKKISKSALKNWVV 574 (607)
Q Consensus 514 eAkalARrIF~nva-kpG~~y-I~ldDL~rF~------------~eeEAe~aF~lFD~d~~NGdISk~eL~~wVV 574 (607)
.|..-.+++|.-+. +.|..| |..+||...| +++++++.|..+|.+ ++|.|+-+|+...+.
T Consensus 6 ~~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d-~~G~I~f~eF~~l~~ 79 (92)
T cd05025 6 TAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDEN-GDGEVDFQEFVVLVA 79 (92)
T ss_pred HHHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCC-CCCcCcHHHHHHHHH
Confidence 36667889999997 999995 9999988654 357899999999998 799999999977443
No 15
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=93.39 E-value=0.26 Score=43.19 Aligned_cols=61 Identities=18% Similarity=0.230 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHhhc-CCCCC-ccchhhhhccC------------CHHHHHHHhhhhhhccccCCcCHHHHHHHHH
Q 007331 513 YEAKAAARKIFQNVA-KPGSK-FIYLEDLMRFL------------NEDEASKTMSLFEEASERKKISKSALKNWVV 574 (607)
Q Consensus 513 ~eAkalARrIF~nva-kpG~~-yI~ldDL~rF~------------~eeEAe~aF~lFD~d~~NGdISk~eL~~wVV 574 (607)
..|-.-++++|+.++ +.|.. +|..++|...| .+++.++.|.-+|.+ ++|.|+-+|+...+-
T Consensus 6 e~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n-~dG~Idf~EF~~l~~ 80 (93)
T cd05026 6 EGAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSN-KDNEVDFNEFVVLVA 80 (93)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCC-CCCCCCHHHHHHHHH
Confidence 447777889999999 56776 59999998766 235799999999998 899999999977553
No 16
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=93.28 E-value=0.14 Score=56.24 Aligned_cols=63 Identities=16% Similarity=0.211 Sum_probs=55.3
Q ss_pred cCCHHHHHHHHHHHHHhhcCCCCCccchhhhhccCCHHHHHHHhhhhhhccccCCcCHHHHHHHHHHHHH
Q 007331 509 IKTEYEAKAAARKIFQNVAKPGSKFIYLEDLMRFLNEDEASKTMSLFEEASERKKISKSALKNWVVRIWQ 578 (607)
Q Consensus 509 I~Se~eAkalARrIF~nvakpG~~yI~ldDL~rF~~eeEAe~aF~lFD~d~~NGdISk~eL~~wVV~iyr 578 (607)
|.+-.-.+..++.+|+.+...|..+|..+||+. ++..|..||.| ++|.||.+|+...+-.+||
T Consensus 326 ~~~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~------~~~~F~~~D~d-~DG~Is~eEf~~~~~~~~~ 388 (391)
T PRK12309 326 LEGGEAFTHAAQEIFRLYDLDGDGFITREEWLG------SDAVFDALDLN-HDGKITPEEMRAGLGAALR 388 (391)
T ss_pred hhccChhhHHHHHHHHHhCCCCCCcCcHHHHHH------HHHHHHHhCCC-CCCCCcHHHHHHHHHHHHH
Confidence 444455788899999999999999999999963 78899999999 8999999999998887776
No 17
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=93.19 E-value=0.16 Score=37.72 Aligned_cols=52 Identities=21% Similarity=0.280 Sum_probs=43.8
Q ss_pred HHHHHhhcCCCCCccchhhhhccC-------CHHHHHHHhhhhhhccccCCcCHHHHHHH
Q 007331 520 RKIFQNVAKPGSKFIYLEDLMRFL-------NEDEASKTMSLFEEASERKKISKSALKNW 572 (607)
Q Consensus 520 RrIF~nvakpG~~yI~ldDL~rF~-------~eeEAe~aF~lFD~d~~NGdISk~eL~~w 572 (607)
+++|..+...+..+|..+|+...+ +.+++...|..||.+ ++|.|+.+++..+
T Consensus 3 ~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ef~~~ 61 (63)
T cd00051 3 REAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKD-GDGKIDFEEFLEL 61 (63)
T ss_pred HHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCC-CCCeEeHHHHHHH
Confidence 567888888888899999988544 467899999999988 7999999999764
No 18
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=93.13 E-value=0.12 Score=50.64 Aligned_cols=52 Identities=35% Similarity=0.527 Sum_probs=45.7
Q ss_pred HHHHHhhcCCCCCccchhhhhccC--------CHHHHHHHhhhhhhccccCCcCHHHHHHH
Q 007331 520 RKIFQNVAKPGSKFIYLEDLMRFL--------NEDEASKTMSLFEEASERKKISKSALKNW 572 (607)
Q Consensus 520 RrIF~nvakpG~~yI~ldDL~rF~--------~eeEAe~aF~lFD~d~~NGdISk~eL~~w 572 (607)
.++-.-+.+.|+.+|.-+||.+.| +.||+..||.+||-| ++|+||-.+|+..
T Consensus 72 ~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~D-~~Gkis~~~lkrv 131 (172)
T KOG0028|consen 72 LKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAFRLFDDD-KTGKISQRNLKRV 131 (172)
T ss_pred HHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHHHHccccc-CCCCcCHHHHHHH
Confidence 456777889999999999999886 478999999999988 8999999998873
No 19
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=92.97 E-value=0.087 Score=37.02 Aligned_cols=27 Identities=11% Similarity=0.202 Sum_probs=22.5
Q ss_pred HHHHHhhhhhhccccCCcCHHHHHHHHH
Q 007331 547 EASKTMSLFEEASERKKISKSALKNWVV 574 (607)
Q Consensus 547 EAe~aF~lFD~d~~NGdISk~eL~~wVV 574 (607)
|-.++|.+||.| +||.|+.+||..++-
T Consensus 1 ~l~~~F~~~D~d-~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKD-GDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TT-SSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCC-CCCcCcHHHHHHHHH
Confidence 346899999999 899999999998654
No 20
>PTZ00184 calmodulin; Provisional
Probab=92.73 E-value=0.2 Score=44.87 Aligned_cols=57 Identities=12% Similarity=0.278 Sum_probs=49.3
Q ss_pred HHHHHHHHhhcCCCCCccchhhhhccC-------CHHHHHHHhhhhhhccccCCcCHHHHHHHHH
Q 007331 517 AAARKIFQNVAKPGSKFIYLEDLMRFL-------NEDEASKTMSLFEEASERKKISKSALKNWVV 574 (607)
Q Consensus 517 alARrIF~nvakpG~~yI~ldDL~rF~-------~eeEAe~aF~lFD~d~~NGdISk~eL~~wVV 574 (607)
..++.+|+.+...|..+|..+||..++ +++++++.|..+|.+ ++|.|+-+|+..-++
T Consensus 84 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~-~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 84 EEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVD-GDGQINYEEFVKMMM 147 (149)
T ss_pred HHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCC-CCCcCcHHHHHHHHh
Confidence 456889999999999999999998654 578899999999998 799999999987443
No 21
>PLN02964 phosphatidylserine decarboxylase
Probab=92.45 E-value=0.2 Score=58.26 Aligned_cols=59 Identities=8% Similarity=0.135 Sum_probs=50.9
Q ss_pred HHHHHHHHHhhcCCCCCccchhhhhccC-------CHHHHHHHhhhhhhccccCCcCHHHHHHHHHH
Q 007331 516 KAAARKIFQNVAKPGSKFIYLEDLMRFL-------NEDEASKTMSLFEEASERKKISKSALKNWVVR 575 (607)
Q Consensus 516 kalARrIF~nvakpG~~yI~ldDL~rF~-------~eeEAe~aF~lFD~d~~NGdISk~eL~~wVV~ 575 (607)
...++++|..+..+|..+|..++|..+| ++||.++||.+||.| ++|.||.+||+.-+.+
T Consensus 178 ~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkD-gdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 178 RSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLN-GDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCC-CCCcCCHHHHHHHHHh
Confidence 3458999999999999999999997544 477899999999999 8999999999985555
No 22
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=92.29 E-value=0.32 Score=42.81 Aligned_cols=61 Identities=11% Similarity=0.184 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhhcC-CCCCccchhhhhccC--------CH-HHHHHHhhhhhhccccCCcCHHHHHHHHHH
Q 007331 514 EAKAAARKIFQNVAK-PGSKFIYLEDLMRFL--------NE-DEASKTMSLFEEASERKKISKSALKNWVVR 575 (607)
Q Consensus 514 eAkalARrIF~nvak-pG~~yI~ldDL~rF~--------~e-eEAe~aF~lFD~d~~NGdISk~eL~~wVV~ 575 (607)
.|-..-+.+|+.+++ .|..||..++|...| +. +++++.|.-+|.| ++|.|+-+|+..-+..
T Consensus 5 ~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d-~DG~I~F~EF~~l~~~ 75 (89)
T cd05022 5 KAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVN-QDSKLSFEEFWELIGE 75 (89)
T ss_pred HHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCC-CCCCCcHHHHHHHHHH
Confidence 466677899999999 999999999987544 34 7899999999999 8999999999765443
No 23
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=92.27 E-value=0.33 Score=42.53 Aligned_cols=61 Identities=13% Similarity=0.247 Sum_probs=49.1
Q ss_pred HHHHHHHHHHh-hcCCCCC-ccchhhhhccCCH------------HHHHHHhhhhhhccccCCcCHHHHHHHHHHH
Q 007331 515 AKAAARKIFQN-VAKPGSK-FIYLEDLMRFLNE------------DEASKTMSLFEEASERKKISKSALKNWVVRI 576 (607)
Q Consensus 515 AkalARrIF~n-vakpG~~-yI~ldDL~rF~~e------------eEAe~aF~lFD~d~~NGdISk~eL~~wVV~i 576 (607)
|-..=..+|+. +.+.|.. +|..++|..|+.. +++++.|.-+|.| ++|.|+=+|+..++..+
T Consensus 7 ~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d-~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 7 CIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLN-SDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCC-CCCcCcHHHHHHHHHHH
Confidence 34444788999 5567754 9999999987743 5799999999998 79999999999887654
No 24
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=92.22 E-value=0.25 Score=49.20 Aligned_cols=60 Identities=17% Similarity=0.282 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhhcCCCCCc-cchhhhhccCC--------HHHHHHHhhhhhhccccCCcCHHHHHHHHHH
Q 007331 515 AKAAARKIFQNVAKPGSKF-IYLEDLMRFLN--------EDEASKTMSLFEEASERKKISKSALKNWVVR 575 (607)
Q Consensus 515 AkalARrIF~nvakpG~~y-I~ldDL~rF~~--------eeEAe~aF~lFD~d~~NGdISk~eL~~wVV~ 575 (607)
.--+|.||++-|-..+.+. |..+++.+++. ++-++-||.++|.+ ++|-|+|+|+...|..
T Consensus 64 ~Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~-~~G~I~reel~~iv~~ 132 (187)
T KOG0034|consen 64 LNPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLD-GDGFISREELKQILRM 132 (187)
T ss_pred cCcHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCC-CCCcCcHHHHHHHHHH
Confidence 4568899999999888777 99999997653 34688999999999 8999999999985543
No 25
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=91.78 E-value=0.27 Score=38.06 Aligned_cols=42 Identities=21% Similarity=0.226 Sum_probs=34.2
Q ss_pred Cccchhhhhcc--------CCHHHHHHHhhhhhhccccCCcCHHHHHHHHH
Q 007331 532 KFIYLEDLMRF--------LNEDEASKTMSLFEEASERKKISKSALKNWVV 574 (607)
Q Consensus 532 ~yI~ldDL~rF--------~~eeEAe~aF~lFD~d~~NGdISk~eL~~wVV 574 (607)
.+|..+||.++ ++++|++..|..||.+ ++|.|+.+|+...+.
T Consensus 3 G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~-~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 3 GKITREEFRRALSKLGIKDLSEEEVDRLFREFDTD-GDGYISFDEFISMMQ 52 (54)
T ss_dssp SEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTS-SSSSEEHHHHHHHHH
T ss_pred CEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccC-CCCCCCHHHHHHHHH
Confidence 45667776642 5688999999999999 899999999988543
No 26
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=91.52 E-value=0.15 Score=34.81 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=20.3
Q ss_pred HHHhhhhhhccccCCcCHHHHHH
Q 007331 549 SKTMSLFEEASERKKISKSALKN 571 (607)
Q Consensus 549 e~aF~lFD~d~~NGdISk~eL~~ 571 (607)
+++|..+|.| ++|.||.+|+..
T Consensus 2 ~~~F~~~D~d-~DG~is~~E~~~ 23 (25)
T PF13202_consen 2 KDAFQQFDTD-GDGKISFEEFQR 23 (25)
T ss_dssp HHHHHHHTTT-SSSEEEHHHHHH
T ss_pred HHHHHHHcCC-CCCcCCHHHHHH
Confidence 5689999999 899999999987
No 27
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=91.39 E-value=0.54 Score=40.79 Aligned_cols=62 Identities=10% Similarity=0.246 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhhcCCC--CCccchhhhhccCC------------HHHHHHHhhhhhhccccCCcCHHHHHHHHHHH
Q 007331 514 EAKAAARKIFQNVAKPG--SKFIYLEDLMRFLN------------EDEASKTMSLFEEASERKKISKSALKNWVVRI 576 (607)
Q Consensus 514 eAkalARrIF~nvakpG--~~yI~ldDL~rF~~------------eeEAe~aF~lFD~d~~NGdISk~eL~~wVV~i 576 (607)
+|-.-.-.+|+..+... ..+|..+||..+|. ++++++.|..+|.+ ++|.|+-+|+..-+...
T Consensus 5 ~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d-~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 5 KAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTN-QDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCC-CCCcCcHHHHHHHHHHH
Confidence 35556678999999763 67999999886553 68899999999988 79999999998755544
No 28
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=90.49 E-value=0.64 Score=40.39 Aligned_cols=58 Identities=14% Similarity=0.198 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhhcC-CC-CCccchhhhhccC------------CHHHHHHHhhhhhhccccCCcCHHHHHHH
Q 007331 514 EAKAAARKIFQNVAK-PG-SKFIYLEDLMRFL------------NEDEASKTMSLFEEASERKKISKSALKNW 572 (607)
Q Consensus 514 eAkalARrIF~nvak-pG-~~yI~ldDL~rF~------------~eeEAe~aF~lFD~d~~NGdISk~eL~~w 572 (607)
.|...-+..|..+.. .| ..+|..++|...+ +++++++.|..+|.+ ++|.|+-+|+..-
T Consensus 5 ~~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~-~dg~I~f~eF~~l 76 (94)
T cd05031 5 HAMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQN-RDGKVNFEEFVSL 76 (94)
T ss_pred HHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCC-CCCcCcHHHHHHH
Confidence 356667889999987 76 6899999998543 457899999999998 7999999999753
No 29
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=89.16 E-value=0.45 Score=41.66 Aligned_cols=51 Identities=14% Similarity=0.190 Sum_probs=32.2
Q ss_pred HHHHHHhhhhh-hccccC-CcCHHHHHHHHHHHHHHH-HHhhhccchhHHHHHHH
Q 007331 546 DEASKTMSLFE-EASERK-KISKSALKNWVVRIWQRM-AFSMRVDITKSLFLAIY 597 (607)
Q Consensus 546 eEAe~aF~lFD-~d~~NG-dISk~eL~~wVV~iyrRK-ALA~SLkDtktAV~kLD 597 (607)
+++.++|..|| .| ++| .||++||+.-+.+..-++ .-..+-.+++..+.++|
T Consensus 10 ~~~~~~F~~~dd~d-gdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD 63 (93)
T cd05026 10 DTLIRIFHNYSGKE-GDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLD 63 (93)
T ss_pred HHHHHHHHHHHccC-CCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhC
Confidence 45788999999 56 788 499999999554432211 11112335666666665
No 30
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=87.71 E-value=0.71 Score=39.89 Aligned_cols=27 Identities=22% Similarity=0.323 Sum_probs=23.6
Q ss_pred HHHHHHhhhhh-hccccC-CcCHHHHHHHH
Q 007331 546 DEASKTMSLFE-EASERK-KISKSALKNWV 573 (607)
Q Consensus 546 eEAe~aF~lFD-~d~~NG-dISk~eL~~wV 573 (607)
++..+||.+|| ++ ++| .|+++||+..+
T Consensus 9 ~~l~~~F~~fDd~d-g~G~~Is~~El~~~l 37 (92)
T cd05025 9 ETLINVFHAHSGKE-GDKYKLSKKELKDLL 37 (92)
T ss_pred HHHHHHHHHHhccc-CCCCeECHHHHHHHH
Confidence 67899999997 88 899 49999999855
No 31
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=87.71 E-value=0.35 Score=38.59 Aligned_cols=30 Identities=17% Similarity=0.231 Sum_probs=26.5
Q ss_pred HHHHhhhhhhccccCCcCHHHHHHHHHHHHH
Q 007331 548 ASKTMSLFEEASERKKISKSALKNWVVRIWQ 578 (607)
Q Consensus 548 Ae~aF~lFD~d~~NGdISk~eL~~wVV~iyr 578 (607)
.+++|..||.| ++|.||++||+.++.....
T Consensus 2 l~~~F~~~D~d-~~G~i~~~el~~~~~~~~~ 31 (66)
T PF13499_consen 2 LKEAFKKFDKD-GDGYISKEELRRALKHLGR 31 (66)
T ss_dssp HHHHHHHHSTT-SSSEEEHHHHHHHHHHTTS
T ss_pred HHHHHHHHcCC-ccCCCCHHHHHHHHHHhcc
Confidence 36899999999 8999999999998877764
No 32
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=86.56 E-value=1.8 Score=37.85 Aligned_cols=60 Identities=15% Similarity=0.262 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhhc-CCCCC-ccchhhhhccC------------CHHHHHHHhhhhhhccccCCcCHHHHHHHHHH
Q 007331 515 AKAAARKIFQNVA-KPGSK-FIYLEDLMRFL------------NEDEASKTMSLFEEASERKKISKSALKNWVVR 575 (607)
Q Consensus 515 AkalARrIF~nva-kpG~~-yI~ldDL~rF~------------~eeEAe~aF~lFD~d~~NGdISk~eL~~wVV~ 575 (607)
|-.--+.+|+-+. +.|.. +|..++|...| +++++++.+.-.|++ ++|.|+-+|+...+..
T Consensus 6 ~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n-~dG~v~f~eF~~li~~ 79 (88)
T cd05027 6 AMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSD-GDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCC-CCCcCcHHHHHHHHHH
Confidence 5566788999998 78888 59999976433 257799999999999 8999999999876644
No 33
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=84.04 E-value=0.89 Score=28.63 Aligned_cols=27 Identities=22% Similarity=0.366 Sum_probs=22.7
Q ss_pred HHHHHhhhhhhccccCCcCHHHHHHHHH
Q 007331 547 EASKTMSLFEEASERKKISKSALKNWVV 574 (607)
Q Consensus 547 EAe~aF~lFD~d~~NGdISk~eL~~wVV 574 (607)
|.+++|..||.+ ++|.|+.+++..++-
T Consensus 1 ~~~~~f~~~d~~-~~g~i~~~e~~~~~~ 27 (29)
T smart00054 1 ELKEAFRLFDKD-GDGKIDFEEFKDLLK 27 (29)
T ss_pred CHHHHHHHHCCC-CCCcEeHHHHHHHHH
Confidence 356799999988 799999999988654
No 34
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=83.25 E-value=1.5 Score=37.24 Aligned_cols=28 Identities=14% Similarity=0.316 Sum_probs=24.2
Q ss_pred HHHHHHhhhhhh--ccccCCcCHHHHHHHHH
Q 007331 546 DEASKTMSLFEE--ASERKKISKSALKNWVV 574 (607)
Q Consensus 546 eEAe~aF~lFD~--d~~NGdISk~eL~~wVV 574 (607)
+++.++|.+||+ + ++|.|+.+||+..+.
T Consensus 8 ~~l~~~F~~~D~~~~-~~G~Is~~el~~~l~ 37 (88)
T cd00213 8 ETIIDVFHKYSGKEG-DKDTLSKKELKELLE 37 (88)
T ss_pred HHHHHHHHHHhhccC-CCCcCcHHHHHHHHH
Confidence 568899999999 7 899999999998543
No 35
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=82.86 E-value=2 Score=40.36 Aligned_cols=80 Identities=16% Similarity=0.164 Sum_probs=58.4
Q ss_pred HHHHHHHHhhcCCCCCccchhhhhccC-------CHHHHHHHhhhhhhccccCCcCHHHHHHHHHHHHH-HHHHhhhccc
Q 007331 517 AAARKIFQNVAKPGSKFIYLEDLMRFL-------NEDEASKTMSLFEEASERKKISKSALKNWVVRIWQ-RMAFSMRVDI 588 (607)
Q Consensus 517 alARrIF~nvakpG~~yI~ldDL~rF~-------~eeEAe~aF~lFD~d~~NGdISk~eL~~wVV~iyr-RKALA~SLkD 588 (607)
.--+.+|.-|.+.|..+|..++|..+| +++|....+.-+|.| ++|.|+.+|+..-+...+. ......+-..
T Consensus 8 ~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~d-g~g~I~~~eF~~l~~~~~~~~~~~~~~~~e 86 (151)
T KOG0027|consen 8 LELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLD-GDGTIDFEEFLDLMEKLGEEKTDEEASSEE 86 (151)
T ss_pred HHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCC-CCCeEcHHHHHHHHHhhhcccccccccHHH
Confidence 345789999999999999988876443 488999999999999 8999999999996665554 3332222234
Q ss_pred hhHHHHHHH
Q 007331 589 TKSLFLAIY 597 (607)
Q Consensus 589 tktAV~kLD 597 (607)
++.|...+|
T Consensus 87 l~eaF~~fD 95 (151)
T KOG0027|consen 87 LKEAFRVFD 95 (151)
T ss_pred HHHHHHHHc
Confidence 444544444
No 36
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=82.66 E-value=1.8 Score=37.62 Aligned_cols=51 Identities=8% Similarity=0.111 Sum_probs=31.6
Q ss_pred HHHHHHhhhhhh-ccc-cCCcCHHHHHHHHHH-HHHHHHHhhhccchhHHHHHHH
Q 007331 546 DEASKTMSLFEE-ASE-RKKISKSALKNWVVR-IWQRMAFSMRVDITKSLFLAIY 597 (607)
Q Consensus 546 eEAe~aF~lFD~-d~~-NGdISk~eL~~wVV~-iyrRKALA~SLkDtktAV~kLD 597 (607)
++..+||.+||. | + +|.||.+||+..+.. .+..-....+-.+++..+..+|
T Consensus 8 ~~l~~~F~~~D~~d-g~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D 61 (94)
T cd05031 8 ESLILTFHRYAGKD-GDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLD 61 (94)
T ss_pred HHHHHHHHHHhccC-CCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhC
Confidence 457789999997 7 6 699999999995543 2111112223345555555543
No 37
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=82.18 E-value=3.5 Score=38.13 Aligned_cols=59 Identities=12% Similarity=0.037 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHhhcCCCCCccchhhhhcc-CC--HHHHHHHhhhhhhccccCCcCHHHHHHHH
Q 007331 514 EAKAAARKIFQNVAKPGSKFIYLEDLMRF-LN--EDEASKTMSLFEEASERKKISKSALKNWV 573 (607)
Q Consensus 514 eAkalARrIF~nvakpG~~yI~ldDL~rF-~~--eeEAe~aF~lFD~d~~NGdISk~eL~~wV 573 (607)
+-+.-++..|..+...+..+|..++|..+ +. +..+..-|..+|.+ .+|.||.+|+...+
T Consensus 45 ~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~l~~~e~~~~~f~~~~D~n-~Dg~IS~~Ef~~cl 106 (116)
T cd00252 45 MCKDPVGWMFNQLDGNYDGKLSHHELAPIRLDPNEHCIKPFFESCDLD-KDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHHCCCCCCcCCHHHHHHHHccchHHHHHHHHHHHCCC-CCCCCCHHHHHHHH
Confidence 45677889999999999999999999965 32 45688999999988 79999999998855
No 38
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=81.47 E-value=1.9 Score=38.05 Aligned_cols=47 Identities=2% Similarity=0.000 Sum_probs=31.8
Q ss_pred HHHHHhhhhhh-ccccCCcCHHHHHHHHHH-HHHHHHHhhhccchhHHHHHHH
Q 007331 547 EASKTMSLFEE-ASERKKISKSALKNWVVR-IWQRMAFSMRVDITKSLFLAIY 597 (607)
Q Consensus 547 EAe~aF~lFD~-d~~NGdISk~eL~~wVV~-iyrRKALA~SLkDtktAV~kLD 597 (607)
...+||..||+ + ++|.|+++||+.-+.+ .... |... .|++..+..+|
T Consensus 9 ~l~~~F~~fd~~~-~~g~i~~~ELk~ll~~elg~~--ls~~-~~v~~mi~~~D 57 (89)
T cd05022 9 TLVSNFHKASVKG-GKESLTASEFQELLTQQLPHL--LKDV-EGLEEKMKNLD 57 (89)
T ss_pred HHHHHHHHHhCCC-CCCeECHHHHHHHHHHHhhhh--ccCH-HHHHHHHHHhC
Confidence 45789999999 8 8999999999996655 2221 1111 44555555555
No 39
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=79.87 E-value=2.3 Score=35.94 Aligned_cols=54 Identities=17% Similarity=0.490 Sum_probs=43.8
Q ss_pred HHHHHhhcCCCCCccchhhhhccCC---------HHHHHHHhhhhhhcc---ccCCcCHHHHHHHHH
Q 007331 520 RKIFQNVAKPGSKFIYLEDLMRFLN---------EDEASKTMSLFEEAS---ERKKISKSALKNWVV 574 (607)
Q Consensus 520 RrIF~nvakpG~~yI~ldDL~rF~~---------eeEAe~aF~lFD~d~---~NGdISk~eL~~wVV 574 (607)
+.||.+.+. +..+|..++|.+||. .++|++.+.-|+.+. ..+.+|.+++.+++.
T Consensus 3 ~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~ 68 (83)
T PF09279_consen 3 EEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLF 68 (83)
T ss_dssp HHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHH
T ss_pred HHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHC
Confidence 579999988 999999999999994 456777788777552 368999999988764
No 40
>PRK11281 hypothetical protein; Provisional
Probab=79.57 E-value=4.3 Score=50.37 Aligned_cols=72 Identities=17% Similarity=0.250 Sum_probs=40.9
Q ss_pred ecccCcceeeehh-------------HHHHHHHHHHHHHHHHHHhhhhchhhhhhhhhhh----hhhhheeeeehhhhhh
Q 007331 235 IDYFKKKKLWKLG-------------LWKWELLILVLICGRLVSSWIVRIIVFCIERNFL----LRKRVLYFVYGVRKAV 297 (607)
Q Consensus 235 i~~l~~~~lw~l~-------------LWkW~v~~lVli~GrlVS~WvvrlvV~lIernFl----lrkrVLYfVygLrk~v 297 (607)
++.+++.++|++. ++.-.+.+++++.+++++.+ +..++++.++ +.....|+ +..-+
T Consensus 810 ~~~l~~i~l~~~~~~~~~~~~~~~itl~~Ll~allIl~i~~~l~r~----l~~ll~~~~~~rl~l~~~~~~~---i~~li 882 (1113)
T PRK11281 810 FSYLDSITLWHYTTTTAGGAVVESITLGNLLFALIILVVTYVLVRN----LPGLLEVLVLSRLNLRQGTSYA---ITTLL 882 (1113)
T ss_pred HHHhcCcchhhhccccccccceeeeeHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhccCCchHHHH---HHHHH
Confidence 4556777877644 45544445555555555444 4445544432 22223333 45666
Q ss_pred HHHHHHHHHHHHHHHh
Q 007331 298 QNCLWLGLVLIAWHCL 313 (607)
Q Consensus 298 ~~flWl~lvLiaw~~L 313 (607)
..++|++.+++++..+
T Consensus 883 ~y~I~~i~iliaL~~l 898 (1113)
T PRK11281 883 TYIIIAVGAVTAFSTL 898 (1113)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 7788888888877654
No 41
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=79.35 E-value=2.3 Score=37.20 Aligned_cols=28 Identities=21% Similarity=0.302 Sum_probs=23.3
Q ss_pred HHHHHhhhhh-hccccC-CcCHHHHHHHHHH
Q 007331 547 EASKTMSLFE-EASERK-KISKSALKNWVVR 575 (607)
Q Consensus 547 EAe~aF~lFD-~d~~NG-dISk~eL~~wVV~ 575 (607)
+..+||.+|| +| ++| .|+.+||+..+..
T Consensus 9 ~l~~aF~~fD~~d-gdG~~I~~~eL~~ll~~ 38 (88)
T cd05027 9 ALIDVFHQYSGRE-GDKHKLKKSELKELINN 38 (88)
T ss_pred HHHHHHHHhcccC-CCcCEECHHHHHHHHHH
Confidence 5678999998 68 899 5999999996644
No 42
>PF10329 DUF2417: Region of unknown function (DUF2417); InterPro: IPR019431 This entry represents a family of fungal proteins with no known function. In some cases these proteins also contain an alpha/beta hydrolase fold (IPR000073 from INTERPRO).
Probab=77.69 E-value=29 Score=36.09 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 007331 325 DVLKYATKILICLWVGVMLWLV 346 (607)
Q Consensus 325 ~~l~~VtKVLi~llV~a~l~Lv 346 (607)
.|..+..++++++++..+++|+
T Consensus 177 Ew~~i~~~~i~~~~l~v~~~l~ 198 (232)
T PF10329_consen 177 EWFAILLRTIIKLVLLVVVILI 198 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5777888888888777666654
No 43
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=77.05 E-value=2.9 Score=41.01 Aligned_cols=54 Identities=22% Similarity=0.408 Sum_probs=47.7
Q ss_pred HHHHHHhhcCCCCCccchhhhhccCC-------HHHHHHHhhhhhhccccCCcCHHHHHHHH
Q 007331 519 ARKIFQNVAKPGSKFIYLEDLMRFLN-------EDEASKTMSLFEEASERKKISKSALKNWV 573 (607)
Q Consensus 519 ARrIF~nvakpG~~yI~ldDL~rF~~-------eeEAe~aF~lFD~d~~NGdISk~eL~~wV 573 (607)
-++-|+-|.+.+..||..++|.++++ ++|+++-+..+|.| ++|.|+.++++.-+
T Consensus 94 l~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d-~dG~i~~~eF~~~~ 154 (160)
T COG5126 94 LREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDED-GDGEIDYEEFKKLI 154 (160)
T ss_pred HHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCC-CCceEeHHHHHHHH
Confidence 35568889999999999999998874 78999999999999 79999999998744
No 44
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=76.64 E-value=2.2 Score=33.55 Aligned_cols=26 Identities=8% Similarity=0.147 Sum_probs=22.1
Q ss_pred HHHhhhhhhccccCCcCHHHHHHHHHH
Q 007331 549 SKTMSLFEEASERKKISKSALKNWVVR 575 (607)
Q Consensus 549 e~aF~lFD~d~~NGdISk~eL~~wVV~ 575 (607)
+++|..||.+ ++|.||.+|++.+..+
T Consensus 2 ~~~F~~~D~~-~~G~i~~~el~~~l~~ 27 (67)
T cd00052 2 DQIFRSLDPD-GDGLISGDEARPFLGK 27 (67)
T ss_pred hHHHHHhCCC-CCCcCcHHHHHHHHHH
Confidence 4689999998 8999999999986543
No 45
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=73.15 E-value=4.7 Score=40.33 Aligned_cols=57 Identities=26% Similarity=0.260 Sum_probs=45.4
Q ss_pred HHHHHHHhhcCCCCCccchhhhhcc----CC----------HHHHHHHhhhhhhccccCCcCHHHHHHHHHH
Q 007331 518 AARKIFQNVAKPGSKFIYLEDLMRF----LN----------EDEASKTMSLFEEASERKKISKSALKNWVVR 575 (607)
Q Consensus 518 lARrIF~nvakpG~~yI~ldDL~rF----~~----------eeEAe~aF~lFD~d~~NGdISk~eL~~wVV~ 575 (607)
=.+-.|+-+...+..+|.-+||... +. ++-++..|.-+|.| +.|.||.+|..+.|-+
T Consensus 105 Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d-~DG~IsfeEf~~~v~~ 175 (187)
T KOG0034|consen 105 KLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTD-GDGKISFEEFCKVVEK 175 (187)
T ss_pred HHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCC-CCCcCcHHHHHHHHHc
Confidence 3456677777899999999998753 33 12499999999999 8999999999995543
No 46
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=72.82 E-value=2.8 Score=36.42 Aligned_cols=28 Identities=4% Similarity=0.150 Sum_probs=24.2
Q ss_pred HHHHHHhhhhhhccccCCcCHHHHHHHHH
Q 007331 546 DEASKTMSLFEEASERKKISKSALKNWVV 574 (607)
Q Consensus 546 eEAe~aF~lFD~d~~NGdISk~eL~~wVV 574 (607)
++..++|..||.+ ++|.||.+|++..+.
T Consensus 10 ~~l~~~F~~~D~d-~~G~Is~~el~~~l~ 37 (96)
T smart00027 10 AKYEQIFRSLDKN-QDGTVTGAQAKPILL 37 (96)
T ss_pred HHHHHHHHHhCCC-CCCeEeHHHHHHHHH
Confidence 4578899999998 899999999988653
No 47
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=71.46 E-value=14 Score=41.65 Aligned_cols=41 Identities=22% Similarity=0.212 Sum_probs=33.2
Q ss_pred ceeeehhHHHHHHHHHHHHHHHHHHhhhhchhhhhhhhhhh
Q 007331 241 KKLWKLGLWKWELLILVLICGRLVSSWIVRIIVFCIERNFL 281 (607)
Q Consensus 241 ~~lw~l~LWkW~v~~lVli~GrlVS~WvvrlvV~lIernFl 281 (607)
..+|+.+-=+-.++-++++||++|+.|+..++..-+-|.-.
T Consensus 105 ~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~ 145 (528)
T KOG0253|consen 105 DEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKG 145 (528)
T ss_pred HhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchh
Confidence 35688888888899999999999999998887766655433
No 48
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=69.86 E-value=4.2 Score=37.60 Aligned_cols=28 Identities=14% Similarity=0.120 Sum_probs=25.3
Q ss_pred CHHHHHHHhhhhhhccccCCcCHHHHHHH
Q 007331 544 NEDEASKTMSLFEEASERKKISKSALKNW 572 (607)
Q Consensus 544 ~eeEAe~aF~lFD~d~~NGdISk~eL~~w 572 (607)
-.+++.-+|..||.| ++|.||++||..-
T Consensus 46 ~~~~l~w~F~~lD~d-~DG~Ls~~EL~~~ 73 (116)
T cd00252 46 CKDPVGWMFNQLDGN-YDGKLSHHELAPI 73 (116)
T ss_pred HHHHHHHHHHHHCCC-CCCcCCHHHHHHH
Confidence 467899999999999 8999999999973
No 49
>PRK11465 putative mechanosensitive channel protein; Provisional
Probab=69.77 E-value=53 Score=39.50 Aligned_cols=60 Identities=17% Similarity=0.274 Sum_probs=40.6
Q ss_pred eeehhhhhhHHHHHHHHHHHHHHHhhccc-cccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007331 289 FVYGVRKAVQNCLWLGLVLIAWHCLFDQR-VERETNSDVLKYATKILICLWVGVMLWLVKTL 349 (607)
Q Consensus 289 fVygLrk~v~~flWl~lvLiaw~~Lf~~~-v~r~t~t~~l~~VtKVLi~llV~a~l~LvKkl 349 (607)
.+..+| |+..++|+...+.+|..+--.. .........+..+.++++.++++.+.|.+-+.
T Consensus 426 ~l~~lr-~l~~~~~vl~ll~a~~~l~l~~~~~~~~g~~~i~~l~~i~iil~i~~v~w~l~~~ 486 (741)
T PRK11465 426 ALKTAR-ILTVCVAVMLLLNAWGLFDFWNWLQNGAGEKTVDILIRIALILFFSAVGWTVLAS 486 (741)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHhcchHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566 7889999999999998542211 11112234667788888999888888877553
No 50
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=66.43 E-value=3.1 Score=46.59 Aligned_cols=32 Identities=16% Similarity=0.297 Sum_probs=26.4
Q ss_pred HHHHHHHhhhhhhccccCCcCHHHHHHHHHHHHH
Q 007331 545 EDEASKTMSLFEEASERKKISKSALKNWVVRIWQ 578 (607)
Q Consensus 545 eeEAe~aF~lFD~d~~NGdISk~eL~~wVV~iyr 578 (607)
+..-+-||.|||-| +||+|.++|++. |..+.+
T Consensus 232 ~~~F~IAFKMFD~d-gnG~IdkeEF~~-v~~li~ 263 (489)
T KOG2643|consen 232 ERNFRIAFKMFDLD-GNGEIDKEEFET-VQQLIR 263 (489)
T ss_pred cccceeeeeeeecC-CCCcccHHHHHH-HHHHHH
Confidence 34456799999999 999999999998 666555
No 51
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=62.81 E-value=7.1 Score=28.69 Aligned_cols=28 Identities=21% Similarity=0.318 Sum_probs=23.8
Q ss_pred HHHHhhhhhhccccCCcCHHHHHHHHHHH
Q 007331 548 ASKTMSLFEEASERKKISKSALKNWVVRI 576 (607)
Q Consensus 548 Ae~aF~lFD~d~~NGdISk~eL~~wVV~i 576 (607)
...+|..+|.+ ++|.|+.+++..++-..
T Consensus 2 ~~~~f~~~d~~-~~g~l~~~e~~~~l~~~ 29 (63)
T cd00051 2 LREAFRLFDKD-GDGTISADELKAALKSL 29 (63)
T ss_pred HHHHHHHhCCC-CCCcCcHHHHHHHHHHh
Confidence 56789999988 79999999999976554
No 52
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=61.61 E-value=20 Score=44.79 Aligned_cols=76 Identities=16% Similarity=0.240 Sum_probs=42.7
Q ss_pred ecccCcceeee-------------hhHHHHHHHHHHHHHHHHHHhhhhchhhhhhhhhhhhhhhheeeeehhhhhhHHHH
Q 007331 235 IDYFKKKKLWK-------------LGLWKWELLILVLICGRLVSSWIVRIIVFCIERNFLLRKRVLYFVYGVRKAVQNCL 301 (607)
Q Consensus 235 i~~l~~~~lw~-------------l~LWkW~v~~lVli~GrlVS~WvvrlvV~lIernFllrkrVLYfVygLrk~v~~fl 301 (607)
+.++.+.+||. +.++.-.+.+++++.|++++.|+-+++-..+.....+.....|+ +..-+..++
T Consensus 807 ~s~Ld~i~LW~~t~~~~g~~~~~~itl~~ll~AllIliv~~~l~r~l~~lle~~l~~~~~l~~~~~~~---i~~l~~y~I 883 (1109)
T PRK10929 807 FGFLENISLWDVTSTVQGVESLQPITLGSVLIAILVFIITTQLVRNLPALLELALLQHLDLTPGTGYA---ITTITKYLL 883 (1109)
T ss_pred HHHhcceeEEeeeceeccccceeeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHH---HHHHHHHHH
Confidence 34567888886 45576666667777777776666554432221111112223333 344556677
Q ss_pred HHHHHHHHHHHh
Q 007331 302 WLGLVLIAWHCL 313 (607)
Q Consensus 302 Wl~lvLiaw~~L 313 (607)
|++.+++++..+
T Consensus 884 ~~ig~l~~L~~l 895 (1109)
T PRK10929 884 MLIGGLVGFSMI 895 (1109)
T ss_pred HHHHHHHHHHHc
Confidence 777777766654
No 53
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=56.24 E-value=65 Score=36.05 Aligned_cols=52 Identities=27% Similarity=0.370 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHhHHHHHHh
Q 007331 329 YATKILICLWVGVMLWLVKTLLVKVLASSFHVSTYFDRIQEALFNQYLIETL 380 (607)
Q Consensus 329 ~VtKVLi~llV~a~l~LvKklLVKlIAsSFH~rtYfDRIqESkf~qyvL~tL 380 (607)
+.+=|++.+++..++++++.++..++.+++|.+.||.+=+--+-+-+..+-|
T Consensus 41 l~~lv~~~ii~lvv~~~l~~~l~~v~~~~~~~~~w~~~rKrrra~~~~~egl 92 (400)
T COG3071 41 LTTLVIFLIIALVVLYLLEWLLRRVLRTPAHTRGWFSRRKRRRARKALNEGL 92 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667777778899999999999999999999999665555554444444
No 54
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.65 E-value=19 Score=38.69 Aligned_cols=57 Identities=23% Similarity=0.332 Sum_probs=33.3
Q ss_pred CCCchHHhh-ccc-c-hhhHHHHHHHHHHHHHHhhheeecccCcceeeehhHHHHHHHHHHHHHHH
Q 007331 200 EDLPEEYKK-EKI-S-IWVLLEWFSLILIIGALVCSLTIDYFKKKKLWKLGLWKWELLILVLICGR 262 (607)
Q Consensus 200 ~d~p~~~kk-~k~-~-~~~~iewv~lilil~~LV~sLti~~l~~~~lw~l~LWkW~v~~lVli~Gr 262 (607)
.|+|-++.| -|. . .|.+....+|+-|++||.+-. .-++.+.|+|.+.+ +++...|++
T Consensus 121 ~EIPv~~Qk~vk~~yylwm~~~~tL~~Niia~la~~i---~g~~~~~f~Laii~---fllftPcsy 180 (313)
T KOG3088|consen 121 NEIPVEFQKLVKRAYYLWMGLVLTLLWNIIACLAWWI---KGGGGTIFGLAIIW---FLLFTPCSY 180 (313)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCCCchhhHHHHHH---HHHhCCcee
Confidence 578988876 222 2 222223334555788888763 33567888888763 234455554
No 55
>PF07290 DUF1449: Protein of unknown function (DUF1449); InterPro: IPR010840 This family consists of several bacterial proteins of around 210 residues in length. The function of this family is unknown.
Probab=53.57 E-value=22 Score=36.16 Aligned_cols=40 Identities=13% Similarity=0.153 Sum_probs=28.1
Q ss_pred eeeehhHHHHHHHHHHHHHHHHHHhhhhchhhhhhhhhhh
Q 007331 242 KLWKLGLWKWELLILVLICGRLVSSWIVRIIVFCIERNFL 281 (607)
Q Consensus 242 ~lw~l~LWkW~v~~lVli~GrlVS~WvvrlvV~lIernFl 281 (607)
.+|+-.+..|.+....++.+-++..|+.+.++.++|++..
T Consensus 89 ~~~~~~lp~~l~~~~al~~sl~~~~~~~~~la~ilp~~es 128 (202)
T PF07290_consen 89 SLFGGPLPAWLAAPVALFLSLFFTRYLGRPLARILPKDES 128 (202)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCCcc
Confidence 3466667777777777777777777777777777777553
No 56
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=53.38 E-value=27 Score=35.33 Aligned_cols=55 Identities=15% Similarity=0.198 Sum_probs=42.2
Q ss_pred HHHHHHHHHhhcCCC-CCccchhhhhc----cCC----HHHHHHHhhhhhhccccCCcCHHHHHH
Q 007331 516 KAAARKIFQNVAKPG-SKFIYLEDLMR----FLN----EDEASKTMSLFEEASERKKISKSALKN 571 (607)
Q Consensus 516 kalARrIF~nvakpG-~~yI~ldDL~r----F~~----eeEAe~aF~lFD~d~~NGdISk~eL~~ 571 (607)
+.--+.+|++|...- ...+.++++.. |++ ..=|+.+|..||.+ .||.|+-+|+..
T Consensus 25 ~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~-~dg~i~F~Efi~ 88 (193)
T KOG0044|consen 25 KKEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKN-KDGTIDFLEFIC 88 (193)
T ss_pred HHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhccc-CCCCcCHHHHHH
Confidence 444578999999965 66788888763 443 23399999999999 899999999544
No 57
>KOG3966 consensus p53-mediated apoptosis protein EI24/PIG8 [Signal transduction mechanisms; Defense mechanisms]
Probab=51.61 E-value=2e+02 Score=31.18 Aligned_cols=120 Identities=23% Similarity=0.371 Sum_probs=62.6
Q ss_pred chhhHHHHHHHHHHHHHH--hhheeecccCcceeeehhHHHHHHHHHHHHHHHHHHhhhhchhhhhhhhhhhhhhhheee
Q 007331 212 SIWVLLEWFSLILIIGAL--VCSLTIDYFKKKKLWKLGLWKWELLILVLICGRLVSSWIVRIIVFCIERNFLLRKRVLYF 289 (607)
Q Consensus 212 ~~~~~iewv~lilil~~L--V~sLti~~l~~~~lw~l~LWkW~v~~lVli~GrlVS~WvvrlvV~lIernFllrkrVLYf 289 (607)
-|-.+..|++|+++=-.+ +.-+.+..+-|......-+|-|.=.++.++-|+ .|+.. +|++.|
T Consensus 95 ~wngg~~w~s~llf~~v~ipiL~~~~s~f~g~~s~h~~vw~wl~~~ls~lfg~---iwVlP--------iF~lSk----- 158 (360)
T KOG3966|consen 95 LWNGGAMWISFLLFWQVCIPILGLFFSFFDGTDSGHNVVWGWLHPILSLLFGY---IWVLP--------IFFLSK----- 158 (360)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHheeccCCccccchHhhhhHHHHHHHHH---HHHHH--------HHHHHH-----
Confidence 455667777776642211 111222223344555557899998888888886 35543 344443
Q ss_pred eehhhhhhHHHHHHH-HHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 007331 290 VYGVRKAVQNCLWLG-LVLIAWHCLFDQRVERETNSDVLKYATKILICLWVGVMLWLVKTLLVKVLASSF 358 (607)
Q Consensus 290 VygLrk~v~~flWl~-lvLiaw~~Lf~~~v~r~t~t~~l~~VtKVLi~llV~a~l~LvKklLVKlIAsSF 358 (607)
-| ..+|.. +.=.++...-.. ...-..+-+.+.-.|++.++- +++|+.-.+||++-+.+
T Consensus 159 ------iV-~alWF~DIa~aa~rv~k~~---P~p~p~~Sk~~Ad~Lfs~l~Q-~lFLiQgMlv~l~Pi~l 217 (360)
T KOG3966|consen 159 ------IV-QALWFSDIAGAAMRVLKLP---PPPVPPFSKMLADTLFSALHQ-ILFLIQGMLVQLLPIPL 217 (360)
T ss_pred ------HH-HHHHHHHHHHHHHHHhcCC---CCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHhhcChhh
Confidence 12 233433 233344433222 111123334444445554443 57888888888887655
No 58
>PLN02964 phosphatidylserine decarboxylase
Probab=51.38 E-value=22 Score=41.92 Aligned_cols=54 Identities=17% Similarity=0.225 Sum_probs=42.7
Q ss_pred HHHHHHhhcCCCCCccchhhhhc--c---CCHHH---HHHHhhhhhhccccCCcCHHHHHHHHH
Q 007331 519 ARKIFQNVAKPGSKFIYLEDLMR--F---LNEDE---ASKTMSLFEEASERKKISKSALKNWVV 574 (607)
Q Consensus 519 ARrIF~nvakpG~~yI~ldDL~r--F---~~eeE---Ae~aF~lFD~d~~NGdISk~eL~~wVV 574 (607)
-++.|..+...|..+| +..+++ . .+++| ++++|..||.| ++|.|+.+|+...+-
T Consensus 145 lkeaF~lfD~dgdG~i-Lg~ilrslG~~~pte~e~~fi~~mf~~~D~D-gdG~IdfdEFl~lL~ 206 (644)
T PLN02964 145 ACESFDLLDPSSSNKV-VGSIFVSCSIEDPVETERSFARRILAIVDYD-EDGQLSFSEFSDLIK 206 (644)
T ss_pred HHHHHHHHCCCCCCcC-HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCC-CCCeEcHHHHHHHHH
Confidence 3666999999887776 777775 1 23444 79999999999 899999999998554
No 59
>KOG3817 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.01 E-value=27 Score=38.63 Aligned_cols=56 Identities=9% Similarity=0.102 Sum_probs=36.6
Q ss_pred HHHHHHHHHhhcccccccc-chhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhcc
Q 007331 304 GLVLIAWHCLFDQRVERET-NSDVLKYATKILICLWVGVMLWLVKT---LLVKVLASSFH 359 (607)
Q Consensus 304 ~lvLiaw~~Lf~~~v~r~t-~t~~l~~VtKVLi~llV~a~l~LvKk---lLVKlIAsSFH 359 (607)
.+-+++|..-..++...+. ...++.++.+.+..+|+-+.+|..+. +||++|..-+|
T Consensus 232 ivgliSfaVCYK~GPp~d~RS~~ilmWtLqli~lvl~Yfsvq~p~~a~A~iI~~lc~~~l 291 (452)
T KOG3817|consen 232 IVGLISFAVCYKIGPPKDPRSQTILMWTLQLIGLVLAYFSVQHPSAAIAAIIMVLCFVAL 291 (452)
T ss_pred HHHHHHHhhhhccCCCCCcchhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 3345566655566554443 33677788888888888888877665 45777776665
No 60
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=48.79 E-value=2.3e+02 Score=36.84 Aligned_cols=35 Identities=9% Similarity=0.089 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhchhhhhhhhhhhh
Q 007331 248 LWKWELLILVLICGRLVSSWIVRIIVFCIERNFLL 282 (607)
Q Consensus 248 LWkW~v~~lVli~GrlVS~WvvrlvV~lIernFll 282 (607)
+..++++++++.++.++..|+...+...+...+..
T Consensus 96 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 130 (1466)
T PTZ00265 96 VNDIIFSLVLIGIFQFILSFISSFCMDVVTTKILK 130 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555566666666666665555555544443
No 61
>PRK10263 DNA translocase FtsK; Provisional
Probab=47.86 E-value=4.4e+02 Score=34.20 Aligned_cols=12 Identities=8% Similarity=0.044 Sum_probs=6.1
Q ss_pred hhhHHHHHHHHH
Q 007331 360 VSTYFDRIQEAL 371 (607)
Q Consensus 360 ~rtYfDRIqESk 371 (607)
...+++|+...+
T Consensus 183 wlsIleriG~~v 194 (1355)
T PRK10263 183 WVTIAEKLGGWI 194 (1355)
T ss_pred HHHHHHHHHHHH
Confidence 345566665433
No 62
>COG3336 Predicted membrane protein [Function unknown]
Probab=43.70 E-value=2.8e+02 Score=30.09 Aligned_cols=54 Identities=11% Similarity=0.157 Sum_probs=34.8
Q ss_pred hhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007331 295 KAVQNCLWLGLVLIAWHCLFDQRVERETNSDVLKYATKILICLWVGVMLWLVKTLLVK 352 (607)
Q Consensus 295 k~v~~flWl~lvLiaw~~Lf~~~v~r~t~t~~l~~VtKVLi~llV~a~l~LvKklLVK 352 (607)
+.+.++.-++..++.|-.|+..... ..-+.+..|+...++.+.++-.+=+++++
T Consensus 159 H~lm~~~~f~~aylfww~mI~~dpg----~r~ls~~~Rl~~l~~~~~~~~~~~~~im~ 212 (299)
T COG3336 159 HLLMNLLFFLSAYLFWWAMIGPDPG----PRRLSYLMRLGYLFAAMPLHAFFGALIMF 212 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCC----CccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6777788888888888888875321 22344666766666666665555555544
No 63
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=40.48 E-value=75 Score=31.73 Aligned_cols=22 Identities=23% Similarity=0.190 Sum_probs=11.9
Q ss_pred HHHHHHHHHhhhhchhhhhhhh
Q 007331 257 VLICGRLVSSWIVRIIVFCIER 278 (607)
Q Consensus 257 Vli~GrlVS~WvvrlvV~lIer 278 (607)
+++..-+++++++.++...+.+
T Consensus 115 tli~~~i~~G~~~~~~~~~i~~ 136 (206)
T PF06570_consen 115 TLILVSIVGGLVFYFIFKYIYP 136 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3333445666666665555555
No 64
>PF15300 INT_SG_DDX_CT_C: INTS6/SAGE1/DDX26B/CT45 C-terminus
Probab=40.13 E-value=45 Score=28.36 Aligned_cols=56 Identities=13% Similarity=0.318 Sum_probs=41.2
Q ss_pred HHHHHHHhhcCCCCCccchhhhhccCCHHHHHHHhhhhhhccccCCcCHHHHHHHHHHHHH--HHHHhhhccc
Q 007331 518 AARKIFQNVAKPGSKFIYLEDLMRFLNEDEASKTMSLFEEASERKKISKSALKNWVVRIWQ--RMAFSMRVDI 588 (607)
Q Consensus 518 lARrIF~nvakpG~~yI~ldDL~rF~~eeEAe~aF~lFD~d~~NGdISk~eL~~wVV~iyr--RKALA~SLkD 588 (607)
+=..|++-+.+||++| ++.|.++++-.|.-++-+.=+...+-++-| |+.|+..|.+
T Consensus 7 ik~ql~keIRrpGr~y---------------e~iF~lL~~vqG~~~~r~~fv~~~IkEA~RFkR~~Li~~Le~ 64 (65)
T PF15300_consen 7 IKSQLMKEIRRPGRNY---------------EKIFKLLEQVQGPLEVRKQFVEMIIKEAARFKRRDLIQQLEK 64 (65)
T ss_pred HHHHHHHHHHccCCcH---------------HHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3457888899999998 467888886644445555556777888888 8888887764
No 65
>PF10953 DUF2754: Protein of unknown function (DUF2754); InterPro: IPR020490 This entry contains membrane proteins with no known function.
Probab=39.45 E-value=54 Score=27.66 Aligned_cols=40 Identities=23% Similarity=0.309 Sum_probs=27.6
Q ss_pred cchhhHHHHHHHHHHHHHHhhheeecccCcceeeehhHHHH
Q 007331 211 ISIWVLLEWFSLILIIGALVCSLTIDYFKKKKLWKLGLWKW 251 (607)
Q Consensus 211 ~~~~~~iewv~lilil~~LV~sLti~~l~~~~lw~l~LWkW 251 (607)
-.|-.|..-+.||+|+-++|+.|.++. ++-.-..+.|=-|
T Consensus 9 rdwhyyafa~glifilngvvgllgfea-kgwqtyavglvtw 48 (70)
T PF10953_consen 9 RDWHYYAFAIGLIFILNGVVGLLGFEA-KGWQTYAVGLVTW 48 (70)
T ss_pred hhhHHHHHHHHHHHHhhchhhhceecc-cCceeeeehhHHH
Confidence 346667788899999999999998854 4444444444333
No 66
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=37.99 E-value=6e+02 Score=29.97 Aligned_cols=60 Identities=22% Similarity=0.259 Sum_probs=36.8
Q ss_pred hhHHHHHHHHHHHH-HHhhheeecccCcceeeehhHHHHHHHHHHHHHHHHHHhhhhchhhh
Q 007331 214 WVLLEWFSLILIIG-ALVCSLTIDYFKKKKLWKLGLWKWELLILVLICGRLVSSWIVRIIVF 274 (607)
Q Consensus 214 ~~~iewv~lilil~-~LV~sLti~~l~~~~lw~l~LWkW~v~~lVli~GrlVS~WvvrlvV~ 274 (607)
..++.|+.++++++ ..+.+..+..+=.... -..+|.|.+.++++++.|-+..|...-+.+
T Consensus 5 ~~ll~~l~~i~~i~qa~llA~~l~~l~~~~~-~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~ 65 (559)
T COG4988 5 SALLAVLSGIAIIAQAALLADILTKLIEGQL-FQSLLPLLILLLIALVLRAFLAWLRERLGY 65 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666555 3333443444423333 567788888888999999888777544443
No 67
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=37.74 E-value=34 Score=33.94 Aligned_cols=32 Identities=16% Similarity=0.323 Sum_probs=23.3
Q ss_pred CHHHHHHHhhhhhhccccCCcCHHHHHHHHHHH
Q 007331 544 NEDEASKTMSLFEEASERKKISKSALKNWVVRI 576 (607)
Q Consensus 544 ~eeEAe~aF~lFD~d~~NGdISk~eL~~wVV~i 576 (607)
+++-...||.+||.+ +.|.|..+.|+.|+.+-
T Consensus 99 pe~~I~~AF~~FD~~-~~G~I~~d~lre~Ltt~ 130 (171)
T KOG0031|consen 99 PEEVILNAFKTFDDE-GSGKIDEDYLRELLTTM 130 (171)
T ss_pred HHHHHHHHHHhcCcc-CCCccCHHHHHHHHHHh
Confidence 355577788888866 67888888888877663
No 68
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=37.29 E-value=82 Score=34.24 Aligned_cols=32 Identities=9% Similarity=0.270 Sum_probs=22.2
Q ss_pred eehhHHHHHHHHHHHHHHHHHHhhhhchhhhh
Q 007331 244 WKLGLWKWELLILVLICGRLVSSWIVRIIVFC 275 (607)
Q Consensus 244 w~l~LWkW~v~~lVli~GrlVS~WvvrlvV~l 275 (607)
-..++|-.++++++++...++..|+++.+..+
T Consensus 37 ie~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (398)
T PRK10747 37 IETSVTGLAIILILAMVVLFAIEWLLRRIFRT 68 (398)
T ss_pred EEehHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46777877777777777766777777665554
No 69
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=37.26 E-value=35 Score=37.91 Aligned_cols=25 Identities=12% Similarity=0.185 Sum_probs=23.3
Q ss_pred HHHHHHHhhhhhhccccCCcCHHHHH
Q 007331 545 EDEASKTMSLFEEASERKKISKSALK 570 (607)
Q Consensus 545 eeEAe~aF~lFD~d~~NGdISk~eL~ 570 (607)
+.+++.+|.+||.+ +||.|+++|+.
T Consensus 333 ~~~l~~aF~~~D~d-gdG~Is~~E~~ 357 (391)
T PRK12309 333 THAAQEIFRLYDLD-GDGFITREEWL 357 (391)
T ss_pred hHHHHHHHHHhCCC-CCCcCcHHHHH
Confidence 67899999999999 99999999995
No 70
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=36.91 E-value=74 Score=25.76 Aligned_cols=44 Identities=9% Similarity=0.165 Sum_probs=33.1
Q ss_pred HHHHHHHhhhhhhccccCCcCHHHHHHHHHHHHH---HHHHhhhccc
Q 007331 545 EDEASKTMSLFEEASERKKISKSALKNWVVRIWQ---RMAFSMRVDI 588 (607)
Q Consensus 545 eeEAe~aF~lFD~d~~NGdISk~eL~~wVV~iyr---RKALA~SLkD 588 (607)
..|=+.|..+...+..+|.||.+|+..-+-.+|. +--|..-+.|
T Consensus 5 d~dR~~~~~~L~~a~a~GrL~~~Ef~~R~~~a~~A~t~~eL~~l~~D 51 (53)
T PF08044_consen 5 DADRERAVDLLRAAFAEGRLSLDEFDERLDAAYAARTRGELDALFAD 51 (53)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCcHHHHHHHHcc
Confidence 4555677788888888999999999998888887 4444444444
No 71
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=36.58 E-value=49 Score=37.28 Aligned_cols=60 Identities=13% Similarity=0.261 Sum_probs=43.1
Q ss_pred HHHHHHHHHhhcCCCCCccchhhhhccCCHHH--HHHHhhhhhhccccCCcCHHHHHHHHHHH
Q 007331 516 KAAARKIFQNVAKPGSKFIYLEDLMRFLNEDE--ASKTMSLFEEASERKKISKSALKNWVVRI 576 (607)
Q Consensus 516 kalARrIF~nvakpG~~yI~ldDL~rF~~eeE--Ae~aF~lFD~d~~NGdISk~eL~~wVV~i 576 (607)
..+|+.||.-.....-.-+..+||.+|+.+.| --+.|.-.|.+ .||+|...|+...+.++
T Consensus 50 ~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E~~l~~~F~~iD~~-hdG~i~~~Ei~~~l~~~ 111 (463)
T KOG0036|consen 50 YEAAKMLFSAMDANRDGRVDYSEFKRYLDNKELELYRIFQSIDLE-HDGKIDPNEIWRYLKDL 111 (463)
T ss_pred hHHHHHHHHhcccCcCCcccHHHHHHHHHHhHHHHHHHHhhhccc-cCCccCHHHHHHHHHHh
Confidence 45677788777776666778888888886544 44567777877 68888888877765443
No 72
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=36.54 E-value=15 Score=31.44 Aligned_cols=34 Identities=26% Similarity=0.406 Sum_probs=26.5
Q ss_pred HHHhhcCCCCCccchhhhhccCCHHHHHHHhhhhh
Q 007331 522 IFQNVAKPGSKFIYLEDLMRFLNEDEASKTMSLFE 556 (607)
Q Consensus 522 IF~nvakpG~~yI~ldDL~rF~~eeEAe~aF~lFD 556 (607)
-|+.+ ..|+.||+.+||.+-+.+|+|+-|.....
T Consensus 11 aFr~l-A~~KpyVT~~dLr~~l~pe~aey~~~~Mp 44 (69)
T PF08726_consen 11 AFRAL-AGGKPYVTEEDLRRSLTPEQAEYCISRMP 44 (69)
T ss_dssp HHHHH-CTSSSCEEHHHHHHHS-CCCHHHHHCCSE
T ss_pred HHHHH-HcCCCcccHHHHHHHcCcHHHHHHHHHCc
Confidence 46667 47999999999999999988887765443
No 73
>PF02674 Colicin_V: Colicin V production protein; InterPro: IPR003825 Colicin V is a small extracellular protein toxin which kills sensitive cells by disrupting their membrane potential []. Colicin V is produced from large low-copy plasmids and requires four plasmid genes for synthesis export and immunity [ 3034857). The cvaC gene is the structural gene for colicin V and cvaA and cvaB are required for processing and export of the toxin through the inner and outer membranes cvi confers immunity to the host cell. There are several stages at which host factors could play a role in colicin V production and mutations that alter any of these functions should result in lowered levels of extracellular colicin V ]. Colicin V production protein is required in Escherichia coli for colicin V production from plasmid pColV-K30 []. This entry represent the CvpA protein, which is involved in colicin V production. It is coded for by the cvpA gene, which is found upstream of the purF gene in the purF operon []. ; GO: 0009403 toxin biosynthetic process, 0016020 membrane
Probab=34.96 E-value=3.6e+02 Score=24.68 Aligned_cols=33 Identities=12% Similarity=0.112 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhchhhhhhhhhh
Q 007331 248 LWKWELLILVLICGRLVSSWIVRIIVFCIERNF 280 (607)
Q Consensus 248 LWkW~v~~lVli~GrlVS~WvvrlvV~lIernF 280 (607)
+++=.+-++.+++|.+++.|....+...+..++
T Consensus 21 ~~~~~~~l~~~i~a~~~a~~~~~~~~~~l~~~~ 53 (146)
T PF02674_consen 21 FIRELFSLIGLIVALFVAFLFYPPLAPFLSNYF 53 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455555566667777777777777777777766
No 74
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=34.72 E-value=6.9e+02 Score=29.36 Aligned_cols=28 Identities=11% Similarity=0.070 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhchhhhh
Q 007331 248 LWKWELLILVLICGRLVSSWIVRIIVFC 275 (607)
Q Consensus 248 LWkW~v~~lVli~GrlVS~WvvrlvV~l 275 (607)
+|.+++++++++..+.+..|+-..+...
T Consensus 195 l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (708)
T TIGR01193 195 LGIISIGLIIAYIIQQILSYIQIFLLNV 222 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556665555555555555544443333
No 75
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=34.49 E-value=3.1e+02 Score=33.03 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=11.3
Q ss_pred hhhHhhhhhhccccccccccchHHhhhh
Q 007331 33 IGQFLHKQKASGEISLDMDLEMDELQHQ 60 (607)
Q Consensus 33 ~~~~~~~q~~~~~~~~d~~~~~~~~~~~ 60 (607)
|..=..||... ...--+|--+||-.+.
T Consensus 18 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 44 (742)
T TIGR01299 18 IAKEVKKHAAK-KVNKALDRAQDEYSQR 44 (742)
T ss_pred HHHHHHHHHHH-HHHHHHHHhhHHHhhh
Confidence 34444455431 2222334445665433
No 76
>PF05552 TM_helix: Conserved TM helix; InterPro: IPR008910 This alignment represents a conserved transmembrane helix as well as some flanking sequence. It is often found in association with a Mechanosensitive (MS) channel IPR006685 from INTERPRO.; PDB: 2VV5_F 2OAU_E.
Probab=33.97 E-value=40 Score=26.72 Aligned_cols=27 Identities=26% Similarity=0.448 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHhhhhchhhhhhhh
Q 007331 252 ELLILVLICGRLVSSWIVRIIVFCIER 278 (607)
Q Consensus 252 ~v~~lVli~GrlVS~WvvrlvV~lIer 278 (607)
..-+++++.|+|++.|+.+++..++++
T Consensus 19 v~AilIl~vG~~va~~v~~~~~~~l~~ 45 (53)
T PF05552_consen 19 VGAILILIVGWWVAKFVRKLVRRLLEK 45 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678889999999888887666654
No 77
>TIGR00056 conserved hypothetical integral membrane protein. This model describes a subfamily of the DUF140 family, a set of proteins found so far in Bacteria and chloroplast. Members have multiple predicted transmembrane helical regions. One member of this family has been associated with the toluene tolerance phenotype of Pseudomonas putida. Many bacterial species have one or two members. The Mycobacteria have large paralogous families included in the DUF140 family but excluded from this subfamily on based on extreme divergence at the amino end and on phylogenetic and UPGMA trees on the more conserved regions.
Probab=33.72 E-value=1.8e+02 Score=30.75 Aligned_cols=86 Identities=10% Similarity=0.008 Sum_probs=51.6
Q ss_pred ccchhhHHHHHHHHHHHHHHhhheeecccCcceeeehhHHHHHHHHHHHHHHHHHHhhhhchhhhhhhhhhhhhhhheee
Q 007331 210 KISIWVLLEWFSLILIIGALVCSLTIDYFKKKKLWKLGLWKWELLILVLICGRLVSSWIVRIIVFCIERNFLLRKRVLYF 289 (607)
Q Consensus 210 k~~~~~~iewv~lilil~~LV~sLti~~l~~~~lw~l~LWkW~v~~lVli~GrlVS~WvvrlvV~lIernFllrkrVLYf 289 (607)
-..|++....++.++.+|+|... ..+..+++|++++.+...+-...+-..+..--...++
T Consensus 139 P~~yLv~PRviA~~i~~p~L~~~--------------------~~~vgi~gg~~v~~~~~~i~~~~f~~~~~~~~~~~D~ 198 (259)
T TIGR00056 139 PVEFLVLPRVLACVIMLPLLTVL--------------------SDVAGILGGAFIASSLLGIGSGSFWSKMQNAVGWWDI 198 (259)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHCCHHHH
Confidence 35788888888888888877643 2334567888887665444332222222211123477
Q ss_pred eehhhhhhHHHHHHHHHHHHHHHhhcc
Q 007331 290 VYGVRKAVQNCLWLGLVLIAWHCLFDQ 316 (607)
Q Consensus 290 VygLrk~v~~flWl~lvLiaw~~Lf~~ 316 (607)
+.|+-|+. .|.+++.....++-+..+
T Consensus 199 ~~gliKs~-~Fg~~I~~i~cy~Gl~~~ 224 (259)
T TIGR00056 199 FAGLVKAP-FFGVAIAIIGCYYGFTTK 224 (259)
T ss_pred HHHHHHHH-HHHHHHHHHHHhCCcCCC
Confidence 78888875 456666666666555544
No 78
>COG2456 Uncharacterized conserved protein [Function unknown]
Probab=33.49 E-value=85 Score=29.47 Aligned_cols=84 Identities=17% Similarity=0.246 Sum_probs=55.2
Q ss_pred hhhHHHHHHHHHHHHHHhhheeecccCcceeeehhHHHHHHHHHHHHHHHHHHhhhhchhhhhhhhhhhhhhhheeeeeh
Q 007331 213 IWVLLEWFSLILIIGALVCSLTIDYFKKKKLWKLGLWKWELLILVLICGRLVSSWIVRIIVFCIERNFLLRKRVLYFVYG 292 (607)
Q Consensus 213 ~~~~iewv~lilil~~LV~sLti~~l~~~~lw~l~LWkW~v~~lVli~GrlVS~WvvrlvV~lIernFllrkrVLYfVyg 292 (607)
..-.+|-+..+.++.+++.+..--..++.++-++-+|. +.|++-++..+.|..+.--++++-..+|
T Consensus 7 ~m~~iQ~igii~~l~~m~~~~~r~k~~k~s~~~ll~W~--------------~~wv~vlifal~P~fs~~Ia~ilGlGRG 72 (121)
T COG2456 7 LMYTIQYIGIIFILFLMIYVFFRLKRRKLSLSDLLFWE--------------AFWVFVLIFALFPEFSGEIAEILGLGRG 72 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchHHHH--------------HHHHHHHHHHhcchHHHHHHHHhccccc
Confidence 34567888888888887776544344556666666663 3466666777778877777888888787
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhc
Q 007331 293 VRKAVQNCLWLGLVLIAWHCLFD 315 (607)
Q Consensus 293 Lrk~v~~flWl~lvLiaw~~Lf~ 315 (607)
|.- +-...+.+++-.+|.
T Consensus 73 lDa-----L~vitI~~ayyLlfr 90 (121)
T COG2456 73 LDA-----LFVITIGLAYYLLFR 90 (121)
T ss_pred cch-----hhHHHHHHHHHHHHH
Confidence 653 333445556666665
No 79
>PLN03100 Permease subunit of ER-derived-lipid transporter; Provisional
Probab=33.38 E-value=1.6e+02 Score=31.76 Aligned_cols=86 Identities=10% Similarity=-0.046 Sum_probs=51.3
Q ss_pred ccchhhHHHHHHHHHHHHHHhhheeecccCcceeeehhHHHHHHHHHHHHHHHHHHhhhhchhhhhhhhhhhhhhhheee
Q 007331 210 KISIWVLLEWFSLILIIGALVCSLTIDYFKKKKLWKLGLWKWELLILVLICGRLVSSWIVRIIVFCIERNFLLRKRVLYF 289 (607)
Q Consensus 210 k~~~~~~iewv~lilil~~LV~sLti~~l~~~~lw~l~LWkW~v~~lVli~GrlVS~WvvrlvV~lIernFllrkrVLYf 289 (607)
-+.|++....++.++.+|+|.+. ..+..+++|++++.+...+-...+-..+..--..-++
T Consensus 172 Pi~yLV~PRvlA~~i~~p~L~i~--------------------~~~vgi~gg~lv~~~~~gi~~~~f~~~~~~~l~~~Dl 231 (292)
T PLN03100 172 PVDYLVTPRVIACCLALPILTLM--------------------CFTVGMAASALLADSVYGVSANIILDSAARALRPWDI 231 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCHHHH
Confidence 35688888888888887777632 2344567788777665444332222222211123477
Q ss_pred eehhhhhhHHHHHHHHHHHHHHHhhcc
Q 007331 290 VYGVRKAVQNCLWLGLVLIAWHCLFDQ 316 (607)
Q Consensus 290 VygLrk~v~~flWl~lvLiaw~~Lf~~ 316 (607)
+.++-|++ .|.+++.+...++-+..+
T Consensus 232 ~~gliKs~-vFG~iIali~cy~Gl~~~ 257 (292)
T PLN03100 232 VSAMIKSQ-VFGAIISVISCAWGVTTT 257 (292)
T ss_pred HHHHHHHH-HHHHHHHHHHHhCccCCC
Confidence 78888875 456666666666665554
No 80
>TIGR00845 caca sodium/calcium exchanger 1. This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family
Probab=33.14 E-value=62 Score=39.83 Aligned_cols=24 Identities=8% Similarity=0.347 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhchh
Q 007331 249 WKWELLILVLICGRLVSSWIVRII 272 (607)
Q Consensus 249 WkW~v~~lVli~GrlVS~Wvvrlv 272 (607)
++|..+++.++...+++.+++..+
T Consensus 754 ~g~~~f~~sI~~Ig~l~~~i~~~a 777 (928)
T TIGR00845 754 GGWACFVVSILMIGVLTAFIGDLA 777 (928)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666655555555554444433
No 81
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=32.95 E-value=1.1e+02 Score=24.35 Aligned_cols=40 Identities=10% Similarity=-0.013 Sum_probs=28.4
Q ss_pred hccccCCcCHHHHHHHHHHHHH-HHHHhhhccchhHHHHHH
Q 007331 557 EASERKKISKSALKNWVVRIWQ-RMAFSMRVDITKSLFLAI 596 (607)
Q Consensus 557 ~d~~NGdISk~eL~~wVV~iyr-RKALA~SLkDtktAV~kL 596 (607)
..++||+||.++...-.-+.-. -+.....|+++..-|.+|
T Consensus 13 ~~Le~~~~sLdes~~lyeeg~~l~~~c~~~L~~~e~~i~~l 53 (53)
T PF02609_consen 13 EKLESGELSLDESLKLYEEGMELIKKCQERLEEAEQKIEEL 53 (53)
T ss_dssp HHHHTT-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3567999999999886666666 777777777777777654
No 82
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=32.52 E-value=3.8 Score=36.09 Aligned_cols=8 Identities=38% Similarity=0.655 Sum_probs=0.0
Q ss_pred CCCCCchH
Q 007331 198 LEEDLPEE 205 (607)
Q Consensus 198 ~d~d~p~~ 205 (607)
+++.||..
T Consensus 49 eee~m~rK 56 (81)
T PF14812_consen 49 EEEPMPRK 56 (81)
T ss_dssp --------
T ss_pred hccccccc
Confidence 34455554
No 83
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=31.64 E-value=95 Score=29.40 Aligned_cols=26 Identities=12% Similarity=0.367 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007331 326 VLKYATKILICLWVGVMLWLVKTLLV 351 (607)
Q Consensus 326 ~l~~VtKVLi~llV~a~l~LvKklLV 351 (607)
+.+...|+++|+|.|.++.++|.++.
T Consensus 106 ~~~~~~Rvllgl~~al~vlvAEv~l~ 131 (142)
T PF11712_consen 106 GWSFPYRVLLGLFGALLVLVAEVVLY 131 (142)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 44578899999999999999998874
No 84
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=31.08 E-value=8.3e+02 Score=28.80 Aligned_cols=37 Identities=8% Similarity=0.029 Sum_probs=22.3
Q ss_pred HHHHHHHHhhcchhhHHHHHHHHHHhHHHHHHhcCCC
Q 007331 348 TLLVKVLASSFHVSTYFDRIQEALFNQYLIETLSGPP 384 (607)
Q Consensus 348 klLVKlIAsSFH~rtYfDRIqESkf~qyvL~tLsgpp 384 (607)
.++.+++...+...+...+-+++.++..+.+.+.+..
T Consensus 253 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~ 289 (659)
T TIGR00954 253 GVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSE 289 (659)
T ss_pred HHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3445555555555555555566677777777776643
No 85
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=30.99 E-value=41 Score=29.37 Aligned_cols=47 Identities=11% Similarity=0.130 Sum_probs=29.6
Q ss_pred HHHhhhhhhccc-cCCcCHHHHHHHHHHHHH-HHHHhhhccchhHHHHHHH
Q 007331 549 SKTMSLFEEASE-RKKISKSALKNWVVRIWQ-RMAFSMRVDITKSLFLAIY 597 (607)
Q Consensus 549 e~aF~lFD~d~~-NGdISk~eL~~wVV~iyr-RKALA~SLkDtktAV~kLD 597 (607)
-+.|.-|++..+ +|.||.+||+..+.+.+. -.. .+-.|++..++.+|
T Consensus 13 i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k--~t~~ev~~m~~~~D 61 (88)
T cd05029 13 VAIFHKYSGREGDKNTLSKKELKELIQKELTIGSK--LQDAEIAKLMEDLD 61 (88)
T ss_pred HHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHhc
Confidence 467888887325 789999999996544222 111 23456666666665
No 86
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=30.79 E-value=2.8e+02 Score=30.33 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=18.5
Q ss_pred eeeehhhhhh--HHHHHHHHHHHHHHHhhcc
Q 007331 288 YFVYGVRKAV--QNCLWLGLVLIAWHCLFDQ 316 (607)
Q Consensus 288 YfVygLrk~v--~~flWl~lvLiaw~~Lf~~ 316 (607)
|+-++++.+. +.++++++.++.++.++.+
T Consensus 96 y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~~~ 126 (386)
T PF05975_consen 96 YFKRALRYSFVLQLLIQLLVFLLLLPLLMQV 126 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666665 5566666666777766643
No 87
>TIGR00834 ae anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule.
Probab=30.59 E-value=4.1e+02 Score=33.06 Aligned_cols=137 Identities=16% Similarity=0.265 Sum_probs=69.0
Q ss_pred chhhHHHHHHHHHHHHHHhhheeecccCcceeeehhHHHHHHHHHHHHHHHHHHhhhhch--------hhhhhhhhhhhh
Q 007331 212 SIWVLLEWFSLILIIGALVCSLTIDYFKKKKLWKLGLWKWELLILVLICGRLVSSWIVRI--------IVFCIERNFLLR 283 (607)
Q Consensus 212 ~~~~~iewv~lilil~~LV~sLti~~l~~~~lw~l~LWkW~v~~lVli~GrlVS~Wvvrl--------vV~lIernFllr 283 (607)
+++.-+.++.|.+++|++-........ +=-.+.+. ++++...+||.+-|.....- .+.+++.++.-.
T Consensus 370 q~laa~ifiyFA~L~PaIaFG~ll~~~---T~g~~gv~--E~Llstai~Giifslf~GQPL~IlG~TGPilvF~~~ly~~ 444 (900)
T TIGR00834 370 QCLAAVIFIYFAALSPAITFGGLLGEK---TRNMMGVS--ELLISTAVQGVLFALLAAQPLLVVGFSGPLLVFEEAFFSF 444 (900)
T ss_pred hhHHHHHHHHHHHhhHHhhHHHHHHHh---hCCcchHH--HHHHHHHHHHHHHhhhcCCceEEecCcccHHHHHHHHHHH
Confidence 344555677777888877765433332 11122333 78888999998877544322 223444444433
Q ss_pred hhheeeeehhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHH---HHHHHHHHHHHHHHHH--HHHHHHhhc
Q 007331 284 KRVLYFVYGVRKAVQNCLWLGLVLIAWHCLFDQRVERETNSDVLKYATKI---LICLWVGVMLWLVKTL--LVKVLASSF 358 (607)
Q Consensus 284 krVLYfVygLrk~v~~flWl~lvLiaw~~Lf~~~v~r~t~t~~l~~VtKV---Li~llV~a~l~LvKkl--LVKlIAsSF 358 (607)
++.. ++ -...+..|.|+=...++.++--- ....+++|+|+. ++|+||+ ++++.|.+ +++.-....
T Consensus 445 c~~~----~~-~yl~~~~WigiW~~~~~~lla~~----~~s~lvryiTRFTeEiFa~lIs-~IFI~eai~~L~~~f~~~~ 514 (900)
T TIGR00834 445 CESN----GL-EYLVGRVWIGLWLVLLVLLLVAT----EGSFLVRYISRFTQEIFSFLIS-LIFIYETFSKLIKIFQEHP 514 (900)
T ss_pred Hhhc----CC-chHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHhcCC
Confidence 3221 11 12344445544333333333210 112466777775 5788887 66666554 444433333
Q ss_pred chhhH
Q 007331 359 HVSTY 363 (607)
Q Consensus 359 H~rtY 363 (607)
+...|
T Consensus 515 ~~~~~ 519 (900)
T TIGR00834 515 LQVFY 519 (900)
T ss_pred ccccc
Confidence 33333
No 88
>PF14965 BRI3BP: Negative regulator of p53/TP53
Probab=30.16 E-value=2.1e+02 Score=28.94 Aligned_cols=29 Identities=17% Similarity=0.173 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHhhhhchhhhhhhhhhh
Q 007331 253 LLILVLICGRLVSSWIVRIIVFCIERNFL 281 (607)
Q Consensus 253 v~~lVli~GrlVS~WvvrlvV~lIernFl 281 (607)
.|.++...|+|+-.++.++++.++-|.|-
T Consensus 78 lw~~~aL~~YW~LSllLgl~~~lLgR~fW 106 (177)
T PF14965_consen 78 LWGAVALLAYWFLSLLLGLLFALLGRVFW 106 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677788888888888887777744444
No 89
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=29.42 E-value=91 Score=28.38 Aligned_cols=57 Identities=18% Similarity=0.175 Sum_probs=45.3
Q ss_pred HHHHHhhcCCCCCccchhhhhccC-----CHHHHHHHhhhhhhccccCCcCHHHHHHHHHHHHH
Q 007331 520 RKIFQNVAKPGSKFIYLEDLMRFL-----NEDEASKTMSLFEEASERKKISKSALKNWVVRIWQ 578 (607)
Q Consensus 520 RrIF~nvakpG~~yI~ldDL~rF~-----~eeEAe~aF~lFD~d~~NGdISk~eL~~wVV~iyr 578 (607)
..||.... ++..+|.-++...|+ +.+.-.....+=|-| .+|.++++|+.-+.-=|++
T Consensus 13 ~~~F~~l~-~~~g~isg~~a~~~f~~S~L~~~~L~~IW~LaD~~-~dG~L~~~EF~iAm~Li~~ 74 (104)
T PF12763_consen 13 DQIFQSLD-PQDGKISGDQAREFFMKSGLPRDVLAQIWNLADID-NDGKLDFEEFAIAMHLINR 74 (104)
T ss_dssp HHHHHCTS-SSTTEEEHHHHHHHHHHTTSSHHHHHHHHHHH-SS-SSSEEEHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCCeEeHHHHHHHHHHcCCCHHHHHHHHhhhcCC-CCCcCCHHHHHHHHHHHHH
Confidence 57898875 778899999988765 478899999999999 8999999999775444444
No 90
>PF06687 SUR7: SUR7/PalI family; InterPro: IPR009571 This family consists of several fungal-specific SUR7 proteins. Its activity regulates expression of RVS161, a homologue of human endophilin, suggesting a function for both in endocytosis [, ]. The protein carries four transmembrane domains and is thus likely to act as an anchoring protein for the eisosome to the plasma membrane. Eisosomes are the immobile protein complexes, that include the proteins Pil1 and Lsp1, which co-localise with sites of protein and lipid endocytosis at the plasma membrane. SUR7 protein may play a role in sporulation []. Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This family also includes PalI which is part of a pH signal transduction cascade. Based on the similarity of PalI to the yeast Rim9 meiotic signal transduction component it has been suggested that PalI might be a membrane sensor for ambient pH [].
Probab=29.01 E-value=4.5e+02 Score=25.56 Aligned_cols=25 Identities=12% Similarity=0.351 Sum_probs=15.1
Q ss_pred eeehhhhhhHHHHHHHHHHHHHHHh
Q 007331 289 FVYGVRKAVQNCLWLGLVLIAWHCL 313 (607)
Q Consensus 289 fVygLrk~v~~flWl~lvLiaw~~L 313 (607)
+...+-.....+.|+++++.....+
T Consensus 187 i~a~~G~~~~~~~W~a~~~~~~~~i 211 (212)
T PF06687_consen 187 ISASLGPKFFWLIWLAVAFSLLSCI 211 (212)
T ss_pred eeEecChHHHHHHHHHHHHHHHHHH
Confidence 3334445666778888777665544
No 91
>PF02405 Permease: Permease; InterPro: IPR003453 This domain has no known function nor do any of the proteins that possess it. The aligned region is approximately 150 amino acids long.
Probab=28.75 E-value=4.9e+02 Score=26.50 Aligned_cols=87 Identities=15% Similarity=0.168 Sum_probs=51.6
Q ss_pred ccchhhHHHHHHHHHHHHHHhhheeecccCcceeeehhHHHHHHHHHHHHHHHHHHhhhhchhhhhhhhhhhhhhhheee
Q 007331 210 KISIWVLLEWFSLILIIGALVCSLTIDYFKKKKLWKLGLWKWELLILVLICGRLVSSWIVRIIVFCIERNFLLRKRVLYF 289 (607)
Q Consensus 210 k~~~~~~iewv~lilil~~LV~sLti~~l~~~~lw~l~LWkW~v~~lVli~GrlVS~WvvrlvV~lIernFllrkrVLYf 289 (607)
.+.|++....++.++.+++|... ..+..+++|++++.+...+-...+-..|...-...++
T Consensus 98 p~~yLv~PR~~A~~v~~p~L~~~--------------------~~~~~~~gg~~~~~~~~~~~~~~f~~~~~~~~~~~dl 157 (215)
T PF02405_consen 98 PIRYLVVPRLLAMVVAMPILTVI--------------------FDVIALLGGYLVAVFFLGISFGAFLDSFRSALTPWDL 157 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHCCHHHH
Confidence 45678888887777776665432 2233567777776655443333333333322233466
Q ss_pred eehhhhhhHHHHHHHHHHHHHHHhhccc
Q 007331 290 VYGVRKAVQNCLWLGLVLIAWHCLFDQR 317 (607)
Q Consensus 290 VygLrk~v~~flWl~lvLiaw~~Lf~~~ 317 (607)
+.++-|+. .|.++..+...|+-+..++
T Consensus 158 ~~~l~K~~-~fg~~i~~i~c~~Gl~~~~ 184 (215)
T PF02405_consen 158 LVGLLKAL-VFGLIIALIACYYGLRASG 184 (215)
T ss_pred HHHHHHHH-HHHHHHHHHHHHhHhhcCC
Confidence 77777775 5667777777777777653
No 92
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=27.37 E-value=77 Score=39.47 Aligned_cols=49 Identities=12% Similarity=0.213 Sum_probs=28.9
Q ss_pred HHHHHHHhhhhchhhhhhhhhhhhhhhheeeeehhhhhhHHHHHHHHHHHHHHHhhcc
Q 007331 259 ICGRLVSSWIVRIIVFCIERNFLLRKRVLYFVYGVRKAVQNCLWLGLVLIAWHCLFDQ 316 (607)
Q Consensus 259 i~GrlVS~WvvrlvV~lIernFllrkrVLYfVygLrk~v~~flWl~lvLiaw~~Lf~~ 316 (607)
+.+.+.+.|++-.+.-+++-.| .|+ =|.|+..++|.++..+++..+.-+
T Consensus 976 ~~~l~~~~wvvv~lyPf~kgLm-gR~--------~r~P~~v~v~s~lla~~~~ll~v~ 1024 (1044)
T PLN02915 976 FGKLFFAFWVIVHLYPFLKGLM-GRQ--------NRTPTIVVLWSILLASIFSLVWVR 1024 (1044)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-CCC--------CCCCeeehHHHHHHHHHHHHHHhe
Confidence 4455555565444333333332 233 367888999998888777766543
No 93
>COG3846 TrbL Type IV secretory pathway, TrbL components [Intracellular trafficking and secretion]
Probab=27.26 E-value=2.7e+02 Score=31.85 Aligned_cols=80 Identities=10% Similarity=-0.070 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHhhccccccc--cchhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhcchhhHHHHHHHHHHh
Q 007331 299 NCLWLGLVLIAWHCLFDQRVERE--TNSDVLKYATKILICLWVGVMLWLVKT---LLVKVLASSFHVSTYFDRIQEALFN 373 (607)
Q Consensus 299 ~flWl~lvLiaw~~Lf~~~v~r~--t~t~~l~~VtKVLi~llV~a~l~LvKk---lLVKlIAsSFH~rtYfDRIqESkf~ 373 (607)
-|+|+.+++....++|..--+.- +..+..-..+-.+.|+.+.++.+.+=- .+|.= +-.+-.-..-++++.+.-.
T Consensus 224 k~m~laliigig~~~~~~~t~g~l~~~~tk~~sLa~~~~~l~Ll~L~n~~p~i~~~~V~G-~~~v~~G~~~~~~a~~~~a 302 (452)
T COG3846 224 KLMALALIIGIGSLFLIQQTAGFLNSSVTKIISLAIYLASLVLLALFNYGPPIAAGLVIG-GPQVGAGAVGAGVAISLKA 302 (452)
T ss_pred HHHHHHHHHHHhhHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHhhhHHheeeecc-chhhccchHHHHHHhhhHH
Confidence 37899999888888777532111 112222233334444444444433322 22211 1111112568888888877
Q ss_pred HHHHHH
Q 007331 374 QYLIET 379 (607)
Q Consensus 374 qyvL~t 379 (607)
.+....
T Consensus 303 ~~~~ga 308 (452)
T COG3846 303 TGAAGA 308 (452)
T ss_pred HHHHHH
Confidence 776653
No 94
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=25.77 E-value=1.2e+02 Score=32.11 Aligned_cols=18 Identities=17% Similarity=-0.023 Sum_probs=10.4
Q ss_pred CccCCcCCCCCCchHHhh
Q 007331 191 EEEEDPLLEEDLPEEYKK 208 (607)
Q Consensus 191 eeddd~~~d~d~p~~~kk 208 (607)
+|++|+..|+.--|+.+-
T Consensus 140 ~~~~~~~nd~~~~D~L~v 157 (262)
T KOG4812|consen 140 LENSDGRNDEIDIDGLRV 157 (262)
T ss_pred cccCCCccchhccccccc
Confidence 566666666555555443
No 95
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=25.76 E-value=1e+03 Score=27.16 Aligned_cols=34 Identities=9% Similarity=0.297 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhchhhhhhhhhh
Q 007331 247 GLWKWELLILVLICGRLVSSWIVRIIVFCIERNF 280 (607)
Q Consensus 247 ~LWkW~v~~lVli~GrlVS~WvvrlvV~lIernF 280 (607)
.++.|.++++++++++++..++.+.+...+...+
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (569)
T PRK10789 34 QILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQL 67 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666555544444433333
No 96
>COG3090 DctM TRAP-type C4-dicarboxylate transport system, small permease component [Carbohydrate transport and metabolism]
Probab=25.69 E-value=4.1e+02 Score=26.16 Aligned_cols=44 Identities=11% Similarity=-0.026 Sum_probs=31.1
Q ss_pred CcceeeehhHHHHHHHHHHHHHHHHHHhhhhchhhhhhhhhhhh
Q 007331 239 KKKKLWKLGLWKWELLILVLICGRLVSSWIVRIIVFCIERNFLL 282 (607)
Q Consensus 239 ~~~~lw~l~LWkW~v~~lVli~GrlVS~WvvrlvV~lIernFll 282 (607)
...-.|.=|+=|+|+.|++.++.-....=-.++-+-++..-+-.
T Consensus 42 ~~~~~WseElar~lfvwl~flGa~~~~r~~~Hi~vd~l~~~lp~ 85 (177)
T COG3090 42 NSPISWSEELARLLFVWLIFLGAAYGVREGGHIGVDVLVNLLPP 85 (177)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHhccCCeeeehHHHHhCCH
Confidence 45668999999999999998888776554455555555544443
No 97
>PLN02248 cellulose synthase-like protein
Probab=25.36 E-value=1.4e+02 Score=37.48 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=17.8
Q ss_pred hhhhHHHHHHHHHHHHHHHhhcc
Q 007331 294 RKAVQNCLWLGLVLIAWHCLFDQ 316 (607)
Q Consensus 294 rk~v~~flWl~lvLiaw~~Lf~~ 316 (607)
|.|+..++|.++..++...+.-.
T Consensus 1096 r~P~iv~v~s~ll~~~~sll~v~ 1118 (1135)
T PLN02248 1096 RTPTIVYVWSGLLSITISLLWVA 1118 (1135)
T ss_pred CCCeehHHHHHHHHHHHHHHheE
Confidence 57888999998888877766543
No 98
>KOG2296 consensus Integral membrane protein [General function prediction only]
Probab=25.35 E-value=1.2e+03 Score=27.91 Aligned_cols=22 Identities=27% Similarity=0.684 Sum_probs=12.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhh
Q 007331 246 LGLWKWELLILVLICGRLVSSWI 268 (607)
Q Consensus 246 l~LWkW~v~~lVli~GrlVS~Wv 268 (607)
+++|+|. .|.+....|++--|+
T Consensus 94 ~nlWr~i-YWst~~LTW~ilPli 115 (673)
T KOG2296|consen 94 LNLWRWS-YWSTFLLTWLILPLI 115 (673)
T ss_pred cchhhHH-HHHHHHHHHHHHHHH
Confidence 4579984 455555555554444
No 99
>TIGR00869 sec62 protein translocation protein, Sec62 family. protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins has been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.
Probab=25.19 E-value=1.1e+02 Score=31.85 Aligned_cols=62 Identities=18% Similarity=0.432 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHhhheeecccCcceeeehhHHHHHHHHHHHHHHHHHHhhhhchhhhhhhhhhh
Q 007331 217 LEWFSLILIIGALVCSLTIDYFKKKKLWKLGLWKWELLILVLICGRLVSSWIVRIIVFCIERNFL 281 (607)
Q Consensus 217 iewv~lilil~~LV~sLti~~l~~~~lw~l~LWkW~v~~lVli~GrlVS~WvvrlvV~lIernFl 281 (607)
..++..++++.++++...+|-.+ ......+|--|+.++.+++ -+++.=++|+++|+|-..+.
T Consensus 118 ~~~l~~~~~~~~ila~~lFPlWP--~~~r~gv~YlS~~~lgll~-~~~~laivRlilF~i~~~~~ 179 (232)
T TIGR00869 118 MDYLIVILVVSIILALVLFPLWP--RFMRRGSWYLSLGALGIIG-GFFAVAILRLILFVLTLIVV 179 (232)
T ss_pred HHHHHHHHHHHHHHHHhhcccCh--HHHhHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 34444444444333333344321 1234455655554444443 34445567887777766664
No 100
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=24.98 E-value=1.8e+02 Score=31.59 Aligned_cols=33 Identities=6% Similarity=0.125 Sum_probs=18.2
Q ss_pred eehhHHHHHHHHHHHHHHHHHHhhhhchhhhhh
Q 007331 244 WKLGLWKWELLILVLICGRLVSSWIVRIIVFCI 276 (607)
Q Consensus 244 w~l~LWkW~v~~lVli~GrlVS~WvvrlvV~lI 276 (607)
...++|--.+++.+++...++..|+++.+..+-
T Consensus 37 ie~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~p 69 (409)
T TIGR00540 37 IEMSITGLAIFFIIALAIIFAFEWGLRRFFRLG 69 (409)
T ss_pred EEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 456677555555555555555566665554443
No 101
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=24.40 E-value=56 Score=29.34 Aligned_cols=18 Identities=39% Similarity=0.903 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 007331 330 ATKILICLWVGVMLWLVK 347 (607)
Q Consensus 330 VtKVLi~llV~a~l~LvK 347 (607)
..-.|+++||+|++||+=
T Consensus 43 ~~gal~~IFiGAllWL~G 60 (89)
T PF10762_consen 43 AHGALFSIFIGALLWLVG 60 (89)
T ss_pred HhhHHHHHHHHHHHHHhc
Confidence 445689999999999973
No 102
>PF04144 SCAMP: SCAMP family; InterPro: IPR007273 In vertebrates, secretory carrier membrane proteins (SCAMPs) 1-3 constitute a family of putative membrane-trafficking proteins composed of cytoplasmic N-terminal sequences with NPF repeats, four central transmembrane regions (TMRs), and a cytoplasmic tail. SCAMPs probably function in endocytosis by recruiting EH-domain proteins to the N-terminal NPF repeats but may have additional functions mediated by their other sequences [].; GO: 0015031 protein transport, 0016021 integral to membrane
Probab=24.34 E-value=7e+02 Score=24.62 Aligned_cols=19 Identities=21% Similarity=0.464 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 007331 335 ICLWVGVMLWLVKTLLVKV 353 (607)
Q Consensus 335 i~llV~a~l~LvKklLVKl 353 (607)
+..+|++++|.++.++--+
T Consensus 146 i~~~I~a~~w~~~~~~~~~ 164 (177)
T PF04144_consen 146 ILMLIVAILWTLEAVLSFW 164 (177)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445667777776654333
No 103
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=24.33 E-value=2.3e+02 Score=24.23 Aligned_cols=55 Identities=11% Similarity=0.181 Sum_probs=42.7
Q ss_pred CHHHHHHHhhhhhhccccCCcCHHHHHHHHHHHHH-HHHHhhhccchhHHHHHHHHHHh
Q 007331 544 NEDEASKTMSLFEEASERKKISKSALKNWVVRIWQ-RMAFSMRVDITKSLFLAIYCLLE 601 (607)
Q Consensus 544 ~eeEAe~aF~lFD~d~~NGdISk~eL~~wVV~iyr-RKALA~SLkDtktAV~kLD~vl~ 601 (607)
+.|++..++.-|-..+..|+++.+|+..-.-..-. -++||.++.-+.. +|.+++.
T Consensus 11 s~e~~~~~~~ql~Q~~~~Gkv~~ee~n~~~e~~p~~~~~lAk~~G~t~~---~l~~~~~ 66 (75)
T TIGR02675 11 SAEEADGALIQLSQMLASGKLRGEEINSLLEALPGALQALAKAMGVTRG---ELRKMLS 66 (75)
T ss_pred CHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHhHHHHHHHHHHhCCCHH---HHHHHHH
Confidence 57899999999999999999999999885544444 8999999876544 4444443
No 104
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.14 E-value=40 Score=37.83 Aligned_cols=11 Identities=36% Similarity=0.175 Sum_probs=6.0
Q ss_pred CCcccccccCC
Q 007331 175 GRSGQLKSGFI 185 (607)
Q Consensus 175 ~~s~~~~sg~~ 185 (607)
|.|||--+|+.
T Consensus 252 p~s~~r~~~~n 262 (514)
T KOG3130|consen 252 PFSGQRNSQLN 262 (514)
T ss_pred cchhhhhhccc
Confidence 45555555555
No 105
>COG4473 EcsB Predicted ABC-type exoprotein transport system, permease component [Intracellular trafficking and secretion]
Probab=23.99 E-value=3.3e+02 Score=30.49 Aligned_cols=102 Identities=23% Similarity=0.270 Sum_probs=50.9
Q ss_pred HhhcccchhhHH----HHHHHHHHHHHHhhheeecc-cCcceeeehhHHHHHHHHHHHHHHHHHHhhhhchhhhhhh--h
Q 007331 206 YKKEKISIWVLL----EWFSLILIIGALVCSLTIDY-FKKKKLWKLGLWKWELLILVLICGRLVSSWIVRIIVFCIE--R 278 (607)
Q Consensus 206 ~kk~k~~~~~~i----ewv~lilil~~LV~sLti~~-l~~~~lw~l~LWkW~v~~lVli~GrlVS~WvvrlvV~lIe--r 278 (607)
|+|...+|+.++ ..+.+++.+|+.+.-. .. +++...-.+..|+|.+.+.++...+ ..+..++-| .
T Consensus 14 ~~Ke~~~YLryv~Ndhfvl~L~ilLg~~i~qY--~~llk~~p~~~~p~~~l~~iv~~lll~~------g~vrT~LkeaDk 85 (379)
T COG4473 14 YYKEQNKYLRYVFNDHFVLFLLILLGFGIYQY--SQLLKHIPLNHFPIFPLLAIVIVLLLSI------GSVRTFLKEADK 85 (379)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH--HHHHhcCCcccchHHHHHHHHHHHHHHH------hhHHHHHhCCCE
Confidence 445556666666 2333333444444311 11 2334444667787766655554432 123223322 2
Q ss_pred hhhhhhh---heeeeehhhhhh--HHHHHHHHHHHHHHHhhc
Q 007331 279 NFLLRKR---VLYFVYGVRKAV--QNCLWLGLVLIAWHCLFD 315 (607)
Q Consensus 279 nFllrkr---VLYfVygLrk~v--~~flWl~lvLiaw~~Lf~ 315 (607)
.|++-+. ..|+.+++..+. +.+.|+++++++.+..+.
T Consensus 86 VFLL~~E~~m~~y~r~a~~ySf~~~l~~~~ll~li~~PL~~~ 127 (379)
T COG4473 86 VFLLPKEEEMDQYLRQALLYSFFAQLFVQLLLLLIAMPLFFA 127 (379)
T ss_pred EEEeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3443321 146666666554 667777777777665554
No 106
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=23.87 E-value=7e+02 Score=30.24 Aligned_cols=45 Identities=24% Similarity=0.364 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHHHHHhhheeecccCcceeeehhHHHHHHHHHHHHHHHH
Q 007331 214 WVLLEWFSLILIIGALVCSLTIDYFKKKKLWKLGLWKWELLILVLICGRL 263 (607)
Q Consensus 214 ~~~iewv~lilil~~LV~sLti~~l~~~~lw~l~LWkW~v~~lVli~Grl 263 (607)
+..=|.+++++++++++..+ .+..+|++++=.=...++|+++++.
T Consensus 148 ~~~eei~s~~il~~~~l~G~-----~~~~i~~~sl~~il~~~~vl~~a~~ 192 (764)
T TIGR02865 148 LTNEEIVSLIILIASVLTGL-----RGLSIWGLSLENIIARLAVLLISYI 192 (764)
T ss_pred CcHhHHHHHHHHHHHHHHcc-----CCCEEEeeEHHHHHHHHHHHHHHHh
Confidence 44446666666666555443 5677888888665555666666654
No 107
>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals. The genes that synthesize cellulose in higher plants differ greatly from the well-characterised genes found in Acetobacter and Agrobacterium spp. More correctly designated as "cellulose synthase catalytic subunits", plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity [].; GO: 0016760 cellulose synthase (UDP-forming) activity, 0030244 cellulose biosynthetic process, 0016020 membrane
Probab=23.60 E-value=1.4e+02 Score=35.94 Aligned_cols=47 Identities=17% Similarity=0.257 Sum_probs=28.1
Q ss_pred HHHHHhhhhchhhhhhhhhhhhhhhheeeeehhhhhhHHHHHHHHHHHHHHHhhcc
Q 007331 261 GRLVSSWIVRIIVFCIERNFLLRKRVLYFVYGVRKAVQNCLWLGLVLIAWHCLFDQ 316 (607)
Q Consensus 261 GrlVS~WvvrlvV~lIernFllrkrVLYfVygLrk~v~~flWl~lvLiaw~~Lf~~ 316 (607)
+-+.+.|++-..-=+++-.|.-+. |.|+..++|.++.-+.+..+.-.
T Consensus 660 ~lf~~~wVvv~lyPf~kGL~~R~~---------r~P~~v~v~S~lla~i~~llwv~ 706 (720)
T PF03552_consen 660 QLFFSFWVVVHLYPFLKGLFGRKD---------RIPTSVIVWSVLLASIFSLLWVR 706 (720)
T ss_pred HHHHHHHHHHHhhHHHHhhhcccC---------CcceeehHHHHHHHHHHHHHhee
Confidence 334445554443344444444222 57999999998887777766543
No 108
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=23.30 E-value=1.5e+02 Score=25.33 Aligned_cols=48 Identities=23% Similarity=0.346 Sum_probs=36.5
Q ss_pred CCCCCccchhhhh----ccCCHHHHHHHhhhhhhccccCCcCHHHHHHHHHHH
Q 007331 528 KPGSKFIYLEDLM----RFLNEDEASKTMSLFEEASERKKISKSALKNWVVRI 576 (607)
Q Consensus 528 kpG~~yI~ldDL~----rF~~eeEAe~aF~lFD~d~~NGdISk~eL~~wVV~i 576 (607)
+|.+..+-...|. .+++.+..+.....++. ...++|||+||...+-.|
T Consensus 3 ~P~sp~~~F~~L~~~l~~~l~~~~~~~l~~~Y~~-~k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 3 RPTSPWMPFPMLFSALSKHLPPSKMDLLQKHYEE-FKKKKISREEFVRKLRQI 54 (70)
T ss_pred CCCCCcccHHHHHHHHHHHCCHHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHH
Confidence 4667777777765 47788888888888874 478999999999865444
No 109
>PRK11281 hypothetical protein; Provisional
Probab=23.02 E-value=1.4e+03 Score=29.27 Aligned_cols=15 Identities=27% Similarity=0.394 Sum_probs=11.5
Q ss_pred hhhhhhHhhhhhhcc
Q 007331 30 SVLIGQFLHKQKASG 44 (607)
Q Consensus 30 ~~~~~~~~~~q~~~~ 44 (607)
|-++|+.|++|+.+=
T Consensus 335 s~~l~~~l~~q~~~L 349 (1113)
T PRK11281 335 SLLLSRILYQQQQAL 349 (1113)
T ss_pred cHHHHHHHHHHHHhC
Confidence 457889999998743
No 110
>PLN02400 cellulose synthase
Probab=22.80 E-value=2.3e+02 Score=35.68 Aligned_cols=92 Identities=12% Similarity=0.083 Sum_probs=0.0
Q ss_pred ccCCcCCCCCCchHHhhcccchhhHHHHHHHHHHHHHHhhheeecccCcceeeehhHHHHHH----HHHHHHHHHHHHhh
Q 007331 192 EEEDPLLEEDLPEEYKKEKISIWVLLEWFSLILIIGALVCSLTIDYFKKKKLWKLGLWKWEL----LILVLICGRLVSSW 267 (607)
Q Consensus 192 eddd~~~d~d~p~~~kk~k~~~~~~iewv~lilil~~LV~sLti~~l~~~~lw~l~LWkW~v----~~lVli~GrlVS~W 267 (607)
|||+.+ .+..-.++..+..+.-.++++-+.+++..+ |+... .|..++.+.+.+.|
T Consensus 966 d~~~~~------~ely~f~~s~L~iP~ttl~llNlvaiv~Gv---------------~~~i~~g~~~~g~l~~~~~~~~w 1024 (1085)
T PLN02400 966 DEDGDF------AELYVFKWTSLLIPPTTVLLVNLVGIVAGV---------------SYAINSGYQSWGPLFGKLFFAIW 1024 (1085)
T ss_pred cccccc------cceeeecccchhHHHHHHHHHHHHHHHHHH---------------HHHHhcccchhhHHHHHHHHHHH
Q ss_pred hhchhhhhhhhhhhhhhhheeeeehhhhhhHHHHHHHHHHHHHHHh
Q 007331 268 IVRIIVFCIERNFLLRKRVLYFVYGVRKAVQNCLWLGLVLIAWHCL 313 (607)
Q Consensus 268 vvrlvV~lIernFllrkrVLYfVygLrk~v~~flWl~lvLiaw~~L 313 (607)
++-...-|++-.|.-+- +.|+..++|.++..+.+..+
T Consensus 1025 vvv~l~Pf~kgL~gR~~---------r~P~~v~~~s~lla~~~~l~ 1061 (1085)
T PLN02400 1025 VIAHLYPFLKGLLGRQN---------RTPTIVIVWSILLASIFSLL 1061 (1085)
T ss_pred HHHHHHHHHHHHhccCC---------CCceeHHHHHHHHHHHHHHH
No 111
>PRK10692 hypothetical protein; Provisional
Probab=22.27 E-value=65 Score=29.08 Aligned_cols=19 Identities=37% Similarity=0.924 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 007331 329 YATKILICLWVGVMLWLVK 347 (607)
Q Consensus 329 ~VtKVLi~llV~a~l~LvK 347 (607)
...-.|+++||+|++||+=
T Consensus 42 ~~~gal~~IFiGAllWL~G 60 (92)
T PRK10692 42 FAHGALLSIFVGALLWLAG 60 (92)
T ss_pred HHhhHHHHHHHHHHHHHhc
Confidence 3455689999999999973
No 112
>PF14821 Thr_synth_N: Threonine synthase N terminus; PDB: 3V7N_A 1VB3_A 1KL7_A.
Probab=22.23 E-value=1.8e+02 Score=25.00 Aligned_cols=59 Identities=19% Similarity=0.269 Sum_probs=35.1
Q ss_pred HHHHHHHhhcCCCCCcc-------chhhhhccCCHHHHHHHhhhhhhccccCCcCHHHHHHHHHHHH
Q 007331 518 AARKIFQNVAKPGSKFI-------YLEDLMRFLNEDEASKTMSLFEEASERKKISKSALKNWVVRIW 577 (607)
Q Consensus 518 lARrIF~nvakpG~~yI-------~ldDL~rF~~eeEAe~aF~lFD~d~~NGdISk~eL~~wVV~iy 577 (607)
....|.+.+|.+|.=|+ ..++|....+..=++.|+.++..= -.++|+.++|+..|-++|
T Consensus 14 f~eAil~GlA~DGGLyvP~~iP~l~~~~l~~l~~~sy~elA~~il~~f-~~~di~~~~L~~ii~~AY 79 (79)
T PF14821_consen 14 FKEAILQGLAPDGGLYVPEEIPKLSKEELEELKNLSYAELAFEILSPF-LGDDIPEEELKEIIEKAY 79 (79)
T ss_dssp HHHHHHH-SBTTSB-EEESS-----HHHHHHHTTS-HHHHHHHHHHHH-CCCCS-HHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCCeeEecCcCCCCCHHHHHHHHCCCHHHHHHHHHHHH-HccCCCHHHHHHHHHHHC
Confidence 44567888888886653 334455555543455555555433 368999999999888776
No 113
>PF10225 DUF2215: Uncharacterized conserved protein (DUF2215); InterPro: IPR024233 This entry represents a domain that is found in a number of different proteins, including a family of transmembrane proteins.
Probab=21.64 E-value=9.4e+02 Score=25.14 Aligned_cols=24 Identities=8% Similarity=0.015 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 007331 325 DVLKYATKILICLWVGVMLWLVKT 348 (607)
Q Consensus 325 ~~l~~VtKVLi~llV~a~l~LvKk 348 (607)
+.+.+..+++.++||....+.-+.
T Consensus 128 ~~v~W~Lqligl~lI~~ss~~~~~ 151 (249)
T PF10225_consen 128 NFVKWALQLIGLVLIYFSSQDPEF 151 (249)
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHH
Confidence 567777888888887665554443
No 114
>PF14752 RBP_receptor: Retinol binding protein receptor
Probab=21.22 E-value=2.2e+02 Score=33.76 Aligned_cols=34 Identities=9% Similarity=0.086 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHHHHHhhheeecccCcceeeehh
Q 007331 214 WVLLEWFSLILIIGALVCSLTIDYFKKKKLWKLG 247 (607)
Q Consensus 214 ~~~iewv~lilil~~LV~sLti~~l~~~~lw~l~ 247 (607)
-.+|+-+++.++...+++++.+|-+-+..++.+.
T Consensus 390 G~li~~vv~fl~~~~i~~~vvlPi~~~~~~~~~~ 423 (617)
T PF14752_consen 390 GFLIQQVVFFLCFLFIAFLVVLPILHGRNLLLFW 423 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence 3344445555555666667778887555444333
No 115
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=20.69 E-value=3.3e+02 Score=23.04 Aligned_cols=53 Identities=9% Similarity=0.020 Sum_probs=36.5
Q ss_pred HHHHHHhhhhhhccccCCcCHHHHHHHHHHHHH-HHHHhhhccchhHHHHHHHH
Q 007331 546 DEASKTMSLFEEASERKKISKSALKNWVVRIWQ-RMAFSMRVDITKSLFLAIYC 598 (607)
Q Consensus 546 eEAe~aF~lFD~d~~NGdISk~eL~~wVV~iyr-RKALA~SLkDtktAV~kLD~ 598 (607)
|||-+-..-+=..+++|+++.++...-.-+.-. =|.....|+++..-|..|+.
T Consensus 4 Ee~l~~Le~Iv~~LE~~~l~Leesl~lyeeG~~L~k~c~~~L~~ae~kv~~l~~ 57 (67)
T TIGR01280 4 EEALSELEQIVQKLESGDLALEEALNLFERGMALARRCEKKLAQAEQRVRKLLK 57 (67)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344333333334678999999999886666666 66777778888888777753
No 116
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=20.11 E-value=84 Score=31.28 Aligned_cols=32 Identities=16% Similarity=0.309 Sum_probs=26.4
Q ss_pred HHHHHHhhhhhhccccCCcCHHHHHHHHHHHHH
Q 007331 546 DEASKTMSLFEEASERKKISKSALKNWVVRIWQ 578 (607)
Q Consensus 546 eEAe~aF~lFD~d~~NGdISk~eL~~wVV~iyr 578 (607)
.|-.+||.+.|.+ .+|-|.|+.|++.....++
T Consensus 32 qEfKEAF~~mDqn-rDG~IdkeDL~d~~aSlGk 63 (171)
T KOG0031|consen 32 QEFKEAFNLMDQN-RDGFIDKEDLRDMLASLGK 63 (171)
T ss_pred HHHHHHHHHHhcc-CCCcccHHHHHHHHHHcCC
Confidence 4678999999999 7999999999996655444
No 117
>PF03303 WTF: WTF protein; InterPro: IPR004982 This is a family of mainly hypothetical Schizosacchoromyces pombe proteins that are often encoded near long terminal repeats within the genome. Their function is unknown but they contain several predicted transmembrane regions and at least one protein is up-regulated during meiosis []. Upregulation is also observed in histone deacetylase mutants, indicating their transcription is normally inhibited by hypoacetylation [].
Probab=20.08 E-value=1.1e+03 Score=25.15 Aligned_cols=16 Identities=13% Similarity=0.478 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHhhc
Q 007331 343 LWLVKTLLVKVLASSF 358 (607)
Q Consensus 343 l~LvKklLVKlIAsSF 358 (607)
+|.+|+++-.++...+
T Consensus 224 ~~~~e~~~~gl~~v~~ 239 (247)
T PF03303_consen 224 FWTFETVFPGLCSVNL 239 (247)
T ss_pred HHHHHHhhhhheeehe
Confidence 5778877766554443
Done!