BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007334
(607 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 192 bits (488), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 143/470 (30%), Positives = 235/470 (50%), Gaps = 52/470 (11%)
Query: 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGL 180
P V I+GRPNVGKS +FNR+ R ++V +TP VTRD A+ + F ++D+ G+
Sbjct: 24 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPG--VTRDRIYSSAEWLNYDFNLIDTGGI 81
Query: 181 ETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIV- 239
+ L + + + IFM++ R G+ D EV K L + KP+V
Sbjct: 82 DI--GDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTK---KPVVL 136
Query: 240 AMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSVEDYMLRVL 299
A+NK ++ + + LGFG+P IS GLG+ +L +A+ ++
Sbjct: 137 AVNKLDNTE-----MRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFKNI----- 186
Query: 300 NDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLT 359
PE ++ +Q ++GRPNVGKS+L+NA+L E+RV+V AG T
Sbjct: 187 ----------------PETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTT 230
Query: 360 RDSVRVHFEYQGRTVYLVDTAGWLQREK-EKGPASLSVMQSRKNLMRAHVVALVLDAEE- 417
RD+V F Y + +VDTAG ++ K + SV+++ K + R+ VVA+VLD EE
Sbjct: 231 RDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEG 290
Query: 418 ---------VRAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468
A E G+ +V++VNK D + ++ + K +E + Q + P
Sbjct: 291 IIEQDKRIAGYAHEAGKAVVIVVNKWDAVD--KDESTMKEFEENIRDHFQF----LDYAP 344
Query: 469 VVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWLRKVMGRH-SWKDQSAQPKIKY 527
++F SAL + +M +I + LR+ T+ LN + + + + ++ KI Y
Sbjct: 345 ILFMSALTKKRIHTLMPAIIKASENHSLRVQTNVLNDVIMDAVAMNPTPTHNGSRLKIYY 404
Query: 528 FTQVKARPPTFVAFLSGKKTLSDAELRFLTKSLKEDFDLGGIPIRITQRS 577
TQV +PP+FV F++ + + + RFL +++ F G PI+I R+
Sbjct: 405 ATQVSVKPPSFVVFVNDPELMHFSYERFLENRIRDAFGFEGTPIKIFARA 454
>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
Complex With Gdp
Length = 436
Score = 182 bits (463), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 141/470 (30%), Positives = 229/470 (48%), Gaps = 52/470 (11%)
Query: 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGL 180
P V I+GRPNVGKS +FNR+ R ++V +TP VTRD A+ + F ++D+ G+
Sbjct: 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPG--VTRDRIYSSAEWLNYDFNLIDTGGI 61
Query: 181 ETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIV- 239
+ L + + IF ++ R G+ D EV K L + KP+V
Sbjct: 62 DI--GDEPFLAQIRQQAEIAXDEADVIIFXVNGREGVTAADEEVAKILYRTK---KPVVL 116
Query: 240 AMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSVEDYMLRVL 299
A+NK ++ + LGFG+P IS GLG+ +L +A+ ++
Sbjct: 117 AVNKLDNTEXRANIY-----DFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFKNI----- 166
Query: 300 NDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLT 359
PE ++ +Q ++GRPNVGKS+L+NA L E+RV+V AG T
Sbjct: 167 ----------------PETKYNEEVIQFCLIGRPNVGKSSLVNAXLGEERVIVSNVAGTT 210
Query: 360 RDSVRVHFEYQGRTVYLVDTAGWLQREK-EKGPASLSVMQSRKNLMRAHVVALVLDAEE- 417
RD+V F Y + +VDTAG ++ K + SV+++ K + R+ VVA+VLD EE
Sbjct: 211 RDAVDTSFTYNQQEFVIVDTAGXRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEG 270
Query: 418 ---------VRAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468
A E G+ +V++VNK D + ++ + K +E + Q + P
Sbjct: 271 IIEQDKRIAGYAHEAGKAVVIVVNKWDAVD--KDESTXKEFEENIRDHFQF----LDYAP 324
Query: 469 VVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWLRKVMGRH-SWKDQSAQPKIKY 527
++F SAL + + +I + LR+ T+ LN + + + + ++ KI Y
Sbjct: 325 ILFXSALTKKRIHTLXPAIIKASENHSLRVQTNVLNDVIXDAVAXNPTPTHNGSRLKIYY 384
Query: 528 FTQVKARPPTFVAFLSGKKTLSDAELRFLTKSLKEDFDLGGIPIRITQRS 577
TQV +PP+FV F++ + + RFL +++ F G PI+I R+
Sbjct: 385 ATQVSVKPPSFVVFVNDPELXHFSYERFLENRIRDAFGFEGTPIKIFARA 434
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 171 bits (432), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 138/464 (29%), Positives = 234/464 (50%), Gaps = 49/464 (10%)
Query: 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLE 181
TV+I+GRPNVGKS LFN+L+++++A+V + ++ VTRD + + FK++D+ G+
Sbjct: 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVED--EEGVTRDPVQDTVEWYGKTFKLVDTCGV- 59
Query: 182 TEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAM 241
+ I + +T N + + +F++D + G+ D + +LRK + I+
Sbjct: 60 FDNPQDIISQKXKEVTLNXIREADLVLFVVDGKRGITKEDESLADFLRKST--VDTILVA 117
Query: 242 NKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSVEDYMLRVLND 301
NK E+L + E LGFG+PI +SAE + + E + +E+ L +
Sbjct: 118 NKAENLREFEREVK---PELYSLGFGEPIPVSAEHNINLDTXLETIIKKLEEKGLDL--- 171
Query: 302 SCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRD 361
S ++T +++AIVGRPNVGKSTL NA+L ++R LV P G TRD
Sbjct: 172 ------ESKPEITDA--------IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRD 217
Query: 362 SVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRK---NLMRAHVVALVLDAEEV 418
V GR VDTAG L+R+ P ++ + + ++ +A VV +VLDA +
Sbjct: 218 PVDDEVFIDGRKYVFVDTAG-LRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQG 276
Query: 419 RAVEE----------GRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468
++ GR VV+ NK DL+ R+ KR E + + + + P
Sbjct: 277 ITRQDQRXAGLXERRGRASVVVFNKWDLVVHRE-----KRYDE-FTKLFREKLYFIDYSP 330
Query: 469 VVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWLRKVMGRHSWKDQSAQPKIKYF 528
++FTSA +G + Y + ++P+S +N L+KV+ ++ + KI +
Sbjct: 331 LIFTSADKGWNIDRXIDAXNLAYASYTTKVPSSAINSALQKVL---AFTNLPRGLKIFFG 387
Query: 529 TQVKARPPTFVAFLSGKKTLSDAELRFLTKSLKED-FDLGGIPI 571
QV +PPTF+ F++ + + + + FL K +++ F G PI
Sbjct: 388 VQVDIKPPTFLFFVNSIEKVKNPQKIFLRKLIRDYVFPFEGSPI 431
>pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
pdb|2DYK|B Chain B, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
Length = 161
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 94/169 (55%), Gaps = 20/169 (11%)
Query: 123 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLET 182
V+I+GRPNVGKS+LFNRL+++R A+V + P VTRD++EG+ + RF ++D+ GL
Sbjct: 4 VVIVGRPNVGKSSLFNRLLKKRSAVVADVPG--VTRDLKEGVVETDRGRFLLVDTGGL-- 59
Query: 183 EATSGSILDRTAGMTAN-VLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPI--V 239
SG ++ + L + +F +D R+ L D EV ++LR+ KP+ V
Sbjct: 60 --WSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKG---KPVILV 114
Query: 240 AMNKCESLHN-GTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEAL 287
A + H G L G LGFGDPI S+E G+ EL EA+
Sbjct: 115 ATKVDDPKHELYLGPLYG-------LGFGDPIPTSSEHARGLEELLEAI 156
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAG---- 381
++ IVGRPNVGKS+L N LL++ +V G+TRD E LVDT G
Sbjct: 3 KVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSG 62
Query: 382 --WLQREKEK 389
W ++ +EK
Sbjct: 63 DKWEKKIQEK 72
>pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
Folinic Acid And Zn
Length = 462
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 94/184 (51%), Gaps = 16/184 (8%)
Query: 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQ 384
L++AIVGRPNVGKS+LLNA Q DR +V G TRD V G V ++DTAG
Sbjct: 225 LKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGI-- 282
Query: 385 REKEKGPASLSVMQSRKNLMRAHVVALVLDA--------EEVRAVEEGRGLVVIVNKMDL 436
RE + V +SR+ A +V L +DA +E+ + R L++++NK+DL
Sbjct: 283 RETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKHRPLILVMNKIDL 342
Query: 437 LSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALE----GRGRIAVMHQVIDTYQ 492
+ + ++L E + Q + T Q GI + T+ LE G+ + A M I+ Q
Sbjct: 343 VEKQLITSL--EYPENITQIVHTAAAQKQGIDSLETAILEIVQTGKVQAADMDLAINQRQ 400
Query: 493 KWCL 496
L
Sbjct: 401 AAAL 404
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 64/127 (50%), Gaps = 16/127 (12%)
Query: 123 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLET 182
V I+GRPNVGKS+L N + A+V + P TRD+ E +G + +VLD+AG+
Sbjct: 227 VAIVGRPNVGKSSLLNAWSQSDRAIVTDLPG--TTRDVVESQLVVGGIPVQVLDTAGIRE 284
Query: 183 EATS----GSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPI 238
+ G R A TA+++ + ID +G D E+ + + KH P I
Sbjct: 285 TSDQVEKIGVERSRQAANTADLV------LLTIDAATGWTTGDQEIYEQV-KHRP---LI 334
Query: 239 VAMNKCE 245
+ MNK +
Sbjct: 335 LVMNKID 341
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 70/121 (57%), Gaps = 9/121 (7%)
Query: 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQ 384
L++ IVG+PNVGKSTLLN LL EDR +V G TRD + +G +VDTAG ++
Sbjct: 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAG-VR 302
Query: 385 REKEKGPASLSVMQSRKNLMRAHVVALVLDA-----EEVRAVEE---GRGLVVIVNKMDL 436
E L + ++ + + +A +V VLDA EE R + E + +V++NK+D+
Sbjct: 303 SETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDV 362
Query: 437 L 437
+
Sbjct: 363 V 363
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 92/193 (47%), Gaps = 20/193 (10%)
Query: 123 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLET 182
++I+G+PNVGKS L NRL+ A+V + P TRD+ + + F+++D+AG+ +
Sbjct: 246 MVIVGKPNVGKSTLLNRLLNEDRAIVTDIP--GTTRDVISEEIVIRGILFRIVDTAGVRS 303
Query: 183 EATSGSILDRTA-GMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAM 241
E + +++R T + K +F++D S PLD E K L + + + +V +
Sbjct: 304 E--TNDLVERLGIERTLQEIEKADIVLFVLDASS---PLDEEDRKILERIKNK-RYLVVI 357
Query: 242 NKCESLHNGTGSLAGAAAESLMLGFGDP---IAISAETGLGMTELYEALRPSVEDYMLRV 298
NK + + E + G + ISA G G+ +L E++ ++ R
Sbjct: 358 NKVDVVEK-------INEEEIKNKLGTDRHMVKISALKGEGLEKLEESIYRETQEIFERG 410
Query: 299 LNDSCTQNNSSTQ 311
+DS N Q
Sbjct: 411 -SDSLITNLRQKQ 422
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/98 (33%), Positives = 54/98 (55%), Gaps = 2/98 (2%)
Query: 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQ 384
+++ I GRPN GKS+LLNAL + +V AG TRD +R H G ++++DTAG
Sbjct: 5 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGL-- 62
Query: 385 REKEKGPASLSVMQSRKNLMRAHVVALVLDAEEVRAVE 422
RE + + ++ + + +A V ++D AV+
Sbjct: 63 REASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVD 100
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 123 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGL 180
V+I GRPN GKS+L N L R A+V + TRD+ + + ++D+AGL
Sbjct: 7 VVIAGRPNAGKSSLLNALAGREAAIVTDIAG--TTRDVLREHIHIDGMPLHIIDTAGL 62
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 54/98 (55%), Gaps = 2/98 (2%)
Query: 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQ 384
+++ I GRPN GKS+LLNAL + +V AG TRD +R H G ++++DTAG
Sbjct: 8 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGL-- 65
Query: 385 REKEKGPASLSVMQSRKNLMRAHVVALVLDAEEVRAVE 422
RE + + ++ + + +A V ++D AV+
Sbjct: 66 REASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVD 103
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 123 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGL 180
V+I GRPN GKS+L N L R A+V + TRD+ + + ++D+AGL
Sbjct: 10 VVIAGRPNAGKSSLLNALAGREAAIVTDIAG--TTRDVLREHIHIDGMPLHIIDTAGL 65
>pdb|3GEE|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gdp And Folinic Acid
pdb|3GEI|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|B Chain B, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|C Chain C, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
Length = 476
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 68/163 (41%), Gaps = 28/163 (17%)
Query: 329 IVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKE 388
I G+PN GKSTLLN LL ++R +V G TRD + F + L DTAG RE
Sbjct: 238 IAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGL--REAG 295
Query: 389 KGPASLSVMQSRKNLMRAHVVALVLD------------AEEVRAVEEGRGLVVIVNKMDL 436
+ + +SR + A ++ +LD E++A + + NK+D
Sbjct: 296 EEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLD- 354
Query: 437 LSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRG 479
+ A + I TG V+ SAL G G
Sbjct: 355 -------------RAANADALIRAIADGTGTEVIGISALNGDG 384
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 79/170 (46%), Gaps = 16/170 (9%)
Query: 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLE 181
+ +I G+PN GKS L N L+ + A+V + P TRD E F++ D+AGL
Sbjct: 235 STVIAGKPNAGKSTLLNTLLGQERAIVSHMPG--TTRDYIEECFIHDKTMFRLTDTAGLR 292
Query: 182 TEATSGSILDRTAGMTANV-LAKTQFAIFMIDVRSGLHPLDLEVG--KWLRKHAPQIKPI 238
+G ++ + + +A+ ++++D+ G LD E+ + L+ P K +
Sbjct: 293 ---EAGEEIEHEGIRRSRMKMAEADLILYLLDL--GTERLDDELTEIRELKAAHPAAKFL 347
Query: 239 VAMNKCESLHNGTGSLAGAAAESLMLGFG-DPIAISAETGLGMTELYEAL 287
NK + N A A ++ G G + I ISA G G+ L + +
Sbjct: 348 TVANKLDRAAN-----ADALIRAIADGTGTEVIGISALNGDGIDTLKQHM 392
>pdb|2GJ8|A Chain A, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|B Chain B, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|C Chain C, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|D Chain D, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
Length = 172
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQR 385
++ I GRPN GKS+LLNAL + +V AG TRD +R H G ++++DTAG R
Sbjct: 6 KVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGXPLHIIDTAGL--R 63
Query: 386 EKEKGPASLSVMQSRKNLMRAHVVALVLDAEEVRAVE 422
E + + ++ + + +A V +D AV+
Sbjct: 64 EASDEVERIGIERAWQEIEQADRVLFXVDGTTTDAVD 100
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 123 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGL 180
V+I GRPN GKS+L N L R A+V + TRD+ + ++D+AGL
Sbjct: 7 VVIAGRPNAGKSSLLNALAGREAAIVTDIAG--TTRDVLREHIHIDGXPLHIIDTAGL 62
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 91/182 (50%), Gaps = 27/182 (14%)
Query: 327 LAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVR--VHFEYQGRTVYLVDTAGWLQ 384
+AIVG+PNVGKSTLLN LL ++ P+AG TR V + + + ++L DT G +
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFL-DTPGIYE 71
Query: 385 REKEKGPASLSVMQSRKNLMRAHVVALVLDAEE-VRAVEE----------GRGLVVIVNK 433
+K V ++++L A V+ ++DA E R +E + ++V++NK
Sbjct: 72 PKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINK 131
Query: 434 MDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQK 493
+D + +N + EI P++T I V SAL+G A + +++ T K
Sbjct: 132 IDKIGPAKNVL-------PLIDEIHKKHPELTEI--VPISALKG----ANLDELVKTILK 178
Query: 494 WC 495
+
Sbjct: 179 YL 180
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 6/127 (4%)
Query: 123 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL-GDLRFKVLDSAGLE 181
V I+G+PNVGKS L N L+ + +++ +P TR G+ + + + LD+ G+
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGTKVSII--SPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIY 70
Query: 182 TEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKP-IVA 240
S + + L + +FMID G P D E+ + K P KP IV
Sbjct: 71 EPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIK--PLNKPVIVV 128
Query: 241 MNKCESL 247
+NK + +
Sbjct: 129 INKIDKI 135
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 93/184 (50%), Gaps = 31/184 (16%)
Query: 327 LAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRV----HFEYQGRTVYLVDTAGW 382
+AIVG+PNVGKSTLLN LL ++ P+AG TR +RV + + + ++L DT G
Sbjct: 12 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTR--MRVLGVKNIPNEAQIIFL-DTPGI 68
Query: 383 LQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEE-VRAVEE----------GRGLVVIV 431
+ +K V ++++L A V+ ++DA E R +E + ++V++
Sbjct: 69 YEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVI 128
Query: 432 NKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTY 491
NK+D + +N + EI P++T I V SAL+G A + +++ T
Sbjct: 129 NKIDKIGPAKNVL-------PLIDEIHKKHPELTEI--VPISALKG----ANLDELVKTI 175
Query: 492 QKWC 495
K+
Sbjct: 176 LKYL 179
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 6/127 (4%)
Query: 123 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL-GDLRFKVLDSAGLE 181
V I+G+PNVGKS L N L+ + +++ +P TR G+ + + + LD+ G+
Sbjct: 12 VAIVGKPNVGKSTLLNNLLGTKVSII--SPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIY 69
Query: 182 TEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKP-IVA 240
S + + L + +FMID G P D E+ + K P KP IV
Sbjct: 70 EPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIK--PLNKPVIVV 127
Query: 241 MNKCESL 247
+NK + +
Sbjct: 128 INKIDKI 134
>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form Ii
pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
Length = 258
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 109/224 (48%), Gaps = 21/224 (9%)
Query: 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQ 384
+++A+ G PNVGK++L NAL + V G+T + F Y+G T+ L+D G
Sbjct: 6 VKVALAGCPNVGKTSLFNALTGTKQ-YVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYS 64
Query: 385 REKEKGPASLSVMQSRKNLMRAHVVALVLDAEEVRAVEEGRGLVVIVNKMDLLSGRQNSA 444
G +S+ +R L++ ++L A+ V E+ L++ + +M+ +A
Sbjct: 65 L----GYSSIDEKIARDYLLKGDADLVILVADSVNP-EQSLYLLLEILEMEKKVILAMTA 119
Query: 445 LYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLN 504
+ + K + + + + + GIPVVFTS++ G G + ++++ QK N
Sbjct: 120 IDEAKKTGMKID-RYELQKHLGIPVVFTSSVTGEGLEELKEKIVEYAQK----------N 168
Query: 505 RWLRKVMGRHSWKDQSAQPKIKYF---TQVKARPPTF-VAFLSG 544
L +++ + K +S K++ F +++ P F + +LSG
Sbjct: 169 TILHRMILDYGEKVESEIKKVENFLRDKKLRINPRYFALKYLSG 212
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 7/117 (5%)
Query: 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAG---W 382
++A++G PNVGKST+ NAL E+ V +G G+T + FEY G +VD G
Sbjct: 9 EIALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL 67
Query: 383 LQREKEKGPASLSVMQSRKNLMRAHVVALVLDAE---EVRAVEEGRGLVVIVNKMDL 436
++ A ++ + +L+ V A L+ ++ +E G L++ +NKMDL
Sbjct: 68 TANSIDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDL 124
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 46/173 (26%), Positives = 79/173 (45%), Gaps = 15/173 (8%)
Query: 123 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLET 182
+ +IG PNVGKS +FN L + N P VT + +EG + +FKV+D G+ +
Sbjct: 10 IALIGNPNVGKSTIFNALT-GENVYIGNWPG--VTVEKKEGEFEYNGEKFKVVDLPGVYS 66
Query: 183 EATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKP--IVA 240
T+ SI D + K + ++D + LE +L ++ ++A
Sbjct: 67 -LTANSI-DEIIARDYIINEKPDLVVNIVDATA------LERNLYLTLQLMEMGANLLLA 118
Query: 241 MNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSVED 293
+NK + L G +LG + +SA +G+ EL +A+ +V+D
Sbjct: 119 LNKMD-LAKSLGIEIDVDKLEKILGV-KVVPLSAAKKMGIEELKKAISIAVKD 169
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 7/117 (5%)
Query: 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAG---W 382
++A++G PNVGKST+ NAL E+ V +G G+T + FEY G +VD G
Sbjct: 5 EIALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL 63
Query: 383 LQREKEKGPASLSVMQSRKNLMRAHVVALVLDAE---EVRAVEEGRGLVVIVNKMDL 436
++ A ++ + +L+ V A L+ ++ +E G L++ +NKMDL
Sbjct: 64 TANSIDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDL 120
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 46/173 (26%), Positives = 79/173 (45%), Gaps = 15/173 (8%)
Query: 123 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLET 182
+ +IG PNVGKS +FN L + N P VT + +EG + +FKV+D G+ +
Sbjct: 6 IALIGNPNVGKSTIFNALT-GENVYIGNWPG--VTVEKKEGEFEYNGEKFKVVDLPGVYS 62
Query: 183 EATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKP--IVA 240
T+ SI D + K + ++D + LE +L ++ ++A
Sbjct: 63 -LTANSI-DEIIARDYIINEKPDLVVNIVDATA------LERNLYLTLQLMEMGANLLLA 114
Query: 241 MNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSVED 293
+NK + L G +LG + +SA +G+ EL +A+ +V+D
Sbjct: 115 LNKMD-LAKSLGIEIDVDKLEKILGV-KVVPLSAAKKMGIEELKKAISIAVKD 165
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 7/117 (5%)
Query: 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAG---W 382
++A++G PNVGKST+ NAL E+ V +G G+T + FEY G +VD G
Sbjct: 5 EIALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL 63
Query: 383 LQREKEKGPASLSVMQSRKNLMRAHVVALVLDAE---EVRAVEEGRGLVVIVNKMDL 436
++ A ++ + +L+ V A L+ ++ +E G L++ +NKMDL
Sbjct: 64 TANSIDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDL 120
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 46/173 (26%), Positives = 79/173 (45%), Gaps = 15/173 (8%)
Query: 123 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLET 182
+ +IG PNVGKS +FN L + N P VT + +EG + +FKV+D G+ +
Sbjct: 6 IALIGNPNVGKSTIFNALT-GENVYIGNWPG--VTVEKKEGEFEYNGEKFKVVDLPGVYS 62
Query: 183 EATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKP--IVA 240
T+ SI D + K + ++D + LE +L ++ ++A
Sbjct: 63 -LTANSI-DEIIARDYIINEKPDLVVNIVDATA------LERNLYLTLQLMEMGANLLLA 114
Query: 241 MNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSVED 293
+NK + L G +LG + +SA +G+ EL +A+ +V+D
Sbjct: 115 LNKMD-LAKSLGIEIDVDKLEKILGV-KVVPLSAAKKMGIEELKKAISIAVKD 165
>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob Iron
Iransporter
Length = 168
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 45/169 (26%), Positives = 86/169 (50%), Gaps = 7/169 (4%)
Query: 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQ 384
+++A+ G PNVGK++L NAL + V G+T + F Y+G T+ L+D G
Sbjct: 6 VKVALAGCPNVGKTSLFNALTGTKQ-YVANWPGVTVEKKEGVFTYKGYTINLIDLPG--- 61
Query: 385 REKEKGPASLSVMQSRKNLMRAHVVALVLDAEEVRAVEEGRGLVVIVNKMDLLSGRQNSA 444
G +S+ +R L++ ++L A+ V E+ L++ + +M+ +A
Sbjct: 62 -TYSLGYSSIDEKIARDYLLKGDADLVILVADSVNP-EQSLYLLLEILEMEKKVILAMTA 119
Query: 445 LYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQK 493
+ + K + + + + + GIPVVFTS++ G G + ++++ QK
Sbjct: 120 IDEAKKTGMKID-RYELQKHLGIPVVFTSSVTGEGLEELKEKIVEYAQK 167
Score = 28.9 bits (63), Expect = 8.4, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 123 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAG 179
V + G PNVGK++LFN L ++ V N P VT + +EG+ ++D G
Sbjct: 8 VALAGCPNVGKTSLFNALTGTKQ-YVANWPG--VTVEKKEGVFTYKGYTINLIDLPG 61
>pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJJ|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 168
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 7/117 (5%)
Query: 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAG---W 382
++A++G PNVGKST+ NAL E+ V +G G+T + FEY G +VD G
Sbjct: 6 EIALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL 64
Query: 383 LQREKEKGPASLSVMQSRKNLMRAHVVALVLDAE---EVRAVEEGRGLVVIVNKMDL 436
++ A ++ + +L+ V A L+ ++ E G L++ +NK DL
Sbjct: 65 TANSIDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQLXEXGANLLLALNKXDL 121
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 123 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGL 180
+ +IG PNVGKS +FN L + N P VT + +EG + +FKV+D G+
Sbjct: 7 IALIGNPNVGKSTIFNALT-GENVYIGNWPG--VTVEKKEGEFEYNGEKFKVVDLPGV 61
>pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
pdb|3A1S|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
Length = 258
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 102/226 (45%), Gaps = 25/226 (11%)
Query: 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQ 384
+++A+ G PNVGK++L NAL + V G+T + F Y+G T+ L+D G
Sbjct: 6 VKVALAGCPNVGKTSLFNALTGTKQ-YVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYS 64
Query: 385 REKEKGPASLSVMQSRKNLMR--AHVVALVLDAEEVRAVEEGRGLVVIVNKMDLLSGRQN 442
G +S+ +R L++ A +V LV D+ ++ K +L+
Sbjct: 65 L----GYSSIDEKIARDYLLKGDADLVILVADSVNPEQSLYLLLEILEXEKKVILAXTAI 120
Query: 443 SALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSR 502
K + E+Q + GIPVVFTS++ G G + ++++ QK
Sbjct: 121 DEAKKTGXKIDRYELQKHL----GIPVVFTSSVTGEGLEELKEKIVEYAQK--------- 167
Query: 503 LNRWLRKVMGRHSWKDQSAQPKIKYF---TQVKARPPTF-VAFLSG 544
N L + + + K +S K++ F +++ P F + +LSG
Sbjct: 168 -NTILHRXILDYGEKVESEIKKVENFLRDKKLRINPRYFALKYLSG 212
>pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1X1L|X Chain X, Interaction Of Era,A Gtpase Protein, With The 3'minor
Domain Of The 16s Rrna Within The Thermus Thermophilus
30s Subunit.
pdb|3IEU|A Chain A, Crystal Structure Of Era In Complex With Gdp
pdb|3IEU|B Chain B, Crystal Structure Of Era In Complex With Gdp
Length = 301
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 87/191 (45%), Gaps = 18/191 (9%)
Query: 115 IDINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKV 174
ID + + I+GRPNVGKS L N+L+ ++ ++ + TR G+ G +
Sbjct: 3 IDKSYCGFIAIVGRPNVGKSTLLNKLLGQKISI--TSRKAQTTRHRIVGIHTEGAYQAIY 60
Query: 175 LDSAGLETEATSG--SILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHA 232
+D+ GL E ++++ A ++ + + IF+++ ++ + K A
Sbjct: 61 VDTPGLHMEEKRAINRLMNKAA---SSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKA 117
Query: 233 PQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSV- 291
P I+A+NK +++ L + + F D + ISAETGL + + +R +
Sbjct: 118 P---VILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLP 174
Query: 292 -------EDYM 295
EDY+
Sbjct: 175 EATHHFPEDYI 185
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 327 LAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDS-VRVHFEYQGRTVYLVDTAGWLQR 385
+AIVGRPNVGKSTLLN LL + + +A TR V +H E + +Y VDT G
Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIY-VDTPGLHME 69
Query: 386 EK 387
EK
Sbjct: 70 EK 71
>pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus
30s Subunit
Length = 292
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 84/183 (45%), Gaps = 18/183 (9%)
Query: 123 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLET 182
+ I+GRPNVGKS L N+L+ ++ ++ + TR G+ G + +D+ GL
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQKISI--TSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHM 65
Query: 183 EATSG--SILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVA 240
E ++++ A ++ + + IF+++ ++ + K AP I+A
Sbjct: 66 EEKRAINRLMNKAA---SSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAP---VILA 119
Query: 241 MNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSV--------E 292
+NK +++ L + + F D + ISAETGL + + +R + E
Sbjct: 120 VNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHFPE 179
Query: 293 DYM 295
DY+
Sbjct: 180 DYI 182
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 327 LAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDS-VRVHFEYQGRTVYLVDTAGWLQR 385
+AIVGRPNVGKSTLLN LL + + +A TR V +H E + +Y VDT G
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIY-VDTPGLHME 66
Query: 386 EK 387
EK
Sbjct: 67 EK 68
>pdb|3QQ5|A Chain A, Crystal Structure Of The [fefe]-Hydrogenase Maturation
Protein Hydf
Length = 423
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 65/137 (47%), Gaps = 14/137 (10%)
Query: 327 LAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG-RTVYLVDTAGWLQR 385
+ + GR NVGKS+ +NAL+ ++ +V AG T D V E V LVDT G L
Sbjct: 37 IVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPG-LDD 95
Query: 386 EKEKGPASLSVMQSRKNLMRAHVVALVLDAEEVRAVEEGRGL--------VVIVNKMDLL 437
E G L V ++R+ RA LV D+ ++ L VV+VNK+D+L
Sbjct: 96 VGELG--RLRVEKARRVFYRADCGILVTDSAPTPYEDDVVNLFKEMEIPFVVVVNKIDVL 153
Query: 438 SGRQNS--ALYKRVKEA 452
+ LY+ EA
Sbjct: 154 GEKAEELKGLYESRYEA 170
>pdb|3PQC|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PQC|B Chain B, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PR1|A Chain A, Crystal Structure Of Apo Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb
Length = 195
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 83/192 (43%), Gaps = 25/192 (13%)
Query: 315 SPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTV 374
+P D L ++A VGR NVGKS+LLNAL V G TR ++F
Sbjct: 14 TPGDYPPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRS---INFYLVNSKY 70
Query: 375 YLVDTAGWLQ---REKEKGPASLSVMQSRKNLMRAHVVALVLDA------EEVRAVEEGR 425
Y VD G+ +KE+ V KN +V L++D ++ VE +
Sbjct: 71 YFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMK 130
Query: 426 GL----VVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRI 481
L +++ KMD + +R K+ +E + V + ++ TS++ G G I
Sbjct: 131 SLNIPFTIVLTKMD------KVKMSERAKKL--EEHRKVFSKYGEYTIIPTSSVTGEG-I 181
Query: 482 AVMHQVIDTYQK 493
+ + +I T K
Sbjct: 182 SELLDLISTLLK 193
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 123 VMIIGRPNVGKSALFNRLIRRREALVYNTP 152
V +GR NVGKS+L N L R+ A V TP
Sbjct: 26 VAFVGRSNVGKSSLLNALFNRKIAFVSKTP 55
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 30/55 (54%)
Query: 327 LAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAG 381
+AIVG+PNVGKSTLLN LL + P TR +R R + VDT G
Sbjct: 10 VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPG 64
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 6/125 (4%)
Query: 123 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLET 182
V I+G+PNVGKS L N L+ + A + +P TR G+ G + +D+ GL
Sbjct: 10 VAIVGKPNVGKSTLLNNLLGVKVAPI--SPRPQTTRKRLRGILTEGRRQIVFVDTPGLHK 67
Query: 183 EATS-GSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAM 241
+ G +D+ LA ++++D+R P D V + L+ ++ ++
Sbjct: 68 PMDALGEFMDQE---VYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVG 124
Query: 242 NKCES 246
NK ++
Sbjct: 125 NKLDA 129
>pdb|2E87|A Chain A, Crystal Structure Of Hypothetical Gtp-Binding Protein
Ph1320 From Pyrococcus Horikoshii Ot3, In Complex With
Gdp
Length = 357
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 84/208 (40%), Gaps = 50/208 (24%)
Query: 327 LAIVGRPNVGKSTLLNALLQEDRVLVGPEAG---LTRDSVRV------HFEYQGRTVYLV 377
+ I G PNVGKSTLL AL PE T + V +F YQ ++
Sbjct: 170 VVIAGHPNVGKSTLLKAL-----TTAKPEIASYPFTTRGINVGQFEDGYFRYQ-----II 219
Query: 378 DTAGWLQRE-KEKGPASLSVMQSRKNLMRAHVVALVLD---------AEEVRAVEEGRG- 426
DT G L R E+ + + + L +++ + D E++ EE G
Sbjct: 220 DTPGLLDRPISERNEIEKQAILALRYL--GNLIIYIFDPSEHCGFPLEEQIHLFEEVHGE 277
Query: 427 -----LVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRI 481
+V++NK+D+ L K VKE G+ + SAL+G G
Sbjct: 278 FKDLPFLVVINKIDVADEENIKRLEKFVKE-------------KGLNPIKISALKGTGID 324
Query: 482 AVMHQVIDTYQKWCLRLPTSRLNRWLRK 509
V ++I T + ++ ++ R LR+
Sbjct: 325 LVKEEIIKTLRPLAEKVAREKIERELRR 352
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 84/194 (43%), Gaps = 25/194 (12%)
Query: 111 DFTKIDINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPD----DHVTRDIREGLAK 166
D +D+ + PTV+I G PNVGKS L +AL P+ TR I G +
Sbjct: 159 DLPVVDLEI-PTVVIAGHPNVGKSTLL-------KALTTAKPEIASYPFTTRGINVGQFE 210
Query: 167 LGDLRFKVLDSAG-LETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVG 225
G R++++D+ G L+ + + +++ A + L IF G PL+ ++
Sbjct: 211 DGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGF-PLEEQIH 269
Query: 226 KWLRKHA--PQIKPIVAMNKCE-SLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGM-- 280
+ H + +V +NK + + L E + +PI ISA G G+
Sbjct: 270 LFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEKGL----NPIKISALKGTGIDL 325
Query: 281 --TELYEALRPSVE 292
E+ + LRP E
Sbjct: 326 VKEEIIKTLRPLAE 339
>pdb|3K53|A Chain A, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|B Chain B, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|C Chain C, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|D Chain D, Crystal Structure Of Nfeob From P. Furiosus
Length = 271
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 73/166 (43%), Gaps = 32/166 (19%)
Query: 327 LAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQRE 386
+A+VG PNVGK+T+ NA L R VG G+T + EY+ + +VD G
Sbjct: 6 VALVGNPNVGKTTIFNA-LTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLT 64
Query: 387 KEK------------GPASLSV-MQSRKNLMRAHVVALVLDAEEVRAVEEGRGLVVIVNK 433
G A + V + LMR + L L EV + +++++NK
Sbjct: 65 AHSIDELIARNFILDGNADVIVDIVDSTCLMRNLFLTLELFEMEV------KNIILVLNK 118
Query: 434 MDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRG 479
DLL + K++++ + G+PV+ T+A +G G
Sbjct: 119 FDLLKKKGAKIDIKKMRKEL------------GVPVIPTNAKKGEG 152
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSA 178
+L TV ++G PNVGK+ +FN L R+ V N P VT + +EG+ + + F V+D
Sbjct: 2 VLKTVALVGNPNVGKTTIFNALTGLRQH-VGNWPG--VTVEKKEGIMEYREKEFLVVDLP 58
Query: 179 GL 180
G+
Sbjct: 59 GI 60
>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
Length = 282
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 329 IVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAG--WLQRE 386
I+G PNVGKSTL+N L +++ G G+T V G+ + L+DT G W + E
Sbjct: 125 IIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV---GKELELLDTPGILWPKFE 181
Query: 387 KE 388
E
Sbjct: 182 DE 183
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 124 MIIGRPNVGKSALFNRLIRRREALVYNTP 152
+IIG PNVGKS L NRL ++ A + P
Sbjct: 124 LIIGIPNVGKSTLINRLAKKNIAKTGDRP 152
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 8/85 (9%)
Query: 96 VVEDHKVKPLYEKPVDFTKIDINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDH 155
V+ HK +P + V K+ + L V+I+G PN GKS + N+L +R + V P
Sbjct: 78 VITTHKGEP---RKVLLKKLSFDRLARVLIVGVPNTGKSTIINKLKGKRASSVGAQPG-- 132
Query: 156 VTRDIREGLAKLGDLRFKVLDSAGL 180
+T+ I+ + G K+LD+ G+
Sbjct: 133 ITKGIQWFSLENG---VKILDTPGI 154
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQR 385
++ IVG PN GKST++N L + VG + G+T+ E V ++DT G L +
Sbjct: 101 RVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLE---NGVKILDTPGILYK 157
>pdb|2DBY|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ychf In
Complexed With Gdp
Length = 368
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVL 175
V I+G PNVGKS LFN L R AL N P + +++ G+ L D R L
Sbjct: 3 AVGIVGLPNVGKSTLFNALTRAN-ALAANYPFATIDKNV--GVVPLEDERLYAL 53
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/20 (75%), Positives = 16/20 (80%)
Query: 325 LQLAIVGRPNVGKSTLLNAL 344
L + IVG PNVGKSTL NAL
Sbjct: 2 LAVGIVGLPNVGKSTLFNAL 21
>pdb|2QU8|A Chain A, Crystal Structure Of Putative Nucleolar Gtp-Binding
Protein 1 Pff0625w From Plasmodium Falciparum
Length = 228
Score = 35.4 bits (80), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 73/161 (45%), Gaps = 26/161 (16%)
Query: 331 GRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKE-K 389
G PNVGKS+ +N ++ V V + T++ HF+++ ++DT G L R E +
Sbjct: 36 GAPNVGKSSFMN-IVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENR 94
Query: 390 GPASLSVMQSRKNLMRAHVVALVLDAEE---------------VRAVEEGRGLVVIVNK- 433
++ + + ++ V+ ++D E +++V + +V+ NK
Sbjct: 95 NTIEMTTITALAHI--NGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKI 152
Query: 434 ----MDLLSGRQNSALYKRVKEAVPQEIQ-TVIPQVTGIPV 469
MD LS N L K++ + V I+ + +TG+ V
Sbjct: 153 DKCNMDSLS-IDNKLLIKQILDNVKNPIKFSSFSTLTGVGV 192
>pdb|2DWQ|A Chain A, Thermus Thermophilus Ychf Gtp-Binding Protein
pdb|2DWQ|B Chain B, Thermus Thermophilus Ychf Gtp-Binding Protein
Length = 368
Score = 35.4 bits (80), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVL 175
V I+G PNVGKS LFN L R AL N P + +++ G+ L D R L
Sbjct: 3 AVGIVGLPNVGKSTLFNALTRAN-ALAANYPFATIDKNV--GVVPLEDERLYAL 53
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/20 (75%), Positives = 16/20 (80%)
Query: 325 LQLAIVGRPNVGKSTLLNAL 344
L + IVG PNVGKSTL NAL
Sbjct: 2 LAVGIVGLPNVGKSTLFNAL 21
>pdb|1UDX|A Chain A, Crystal Structure Of The Conserved Protein Tt1381 From
Thermus Thermophilus Hb8
Length = 416
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 86/188 (45%), Gaps = 33/188 (17%)
Query: 114 KIDINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG-DLRF 172
++++ L+ V ++G PN GKS+L + R + P T G+ ++ + RF
Sbjct: 151 RLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKI---APYPFTTLSPNLGVVEVSEEERF 207
Query: 173 KVLDSAGLETEATSGSILDRTAGMTANVL---AKTQFAIFMIDVRS----GLHPLDLEVG 225
+ D G+ A+ G G+ L A+T+ ++++D L L EVG
Sbjct: 208 TLADIPGIIEGASEGK------GLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVG 261
Query: 226 KW----LRKHAPQIKPIVAMNKCESL-HNGTGSLAGAAA-ESLMLGFGDPIAISAETGLG 279
+ LR+ + +VA+NK + L +LA A A E L + + +SA TG G
Sbjct: 262 AYDPALLRRPS-----LVALNKVDLLEEEAVKALADALAREGLAV-----LPVSALTGAG 311
Query: 280 MTELYEAL 287
+ L EAL
Sbjct: 312 LPALKEAL 319
>pdb|3HYR|A Chain A, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
pdb|3HYR|B Chain B, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
pdb|3HYR|C Chain C, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
Length = 270
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 73/178 (41%), Gaps = 24/178 (13%)
Query: 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQ 384
L + ++G PN GK+TL N L R VG AG+T + F V LVD G
Sbjct: 4 LTIGLIGNPNSGKTTLFNQLTGS-RQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYS 62
Query: 385 REKEKGPASLSVMQSRKNLMR--AHVVALVLDAEEVR--------AVEEGRGLVVIVNKM 434
SL + ++ A ++ V+DA + +E G +V +N +
Sbjct: 63 LTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNXL 122
Query: 435 DLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQ 492
D+ K+ + EI + ++ G PV+ + GRG I + ID Y+
Sbjct: 123 DIAE-----------KQNIRIEIDALSARL-GCPVIPLVSTRGRG-IEALKLAIDRYK 167
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 122 TVMIIGRPNVGKSALFNRLIRRRE 145
T+ +IG PN GK+ LFN+L R+
Sbjct: 5 TIGLIGNPNSGKTTLFNQLTGSRQ 28
>pdb|2J3E|A Chain A, Dimerization Is Important For The Gtpase Activity Of
Chloroplast Translocon Components Attoc33 And Pstoc159
Length = 249
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 6/108 (5%)
Query: 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQ 384
+ + ++G+ VGKS+ +N+L+ E V V P V V G T+ ++DT G +
Sbjct: 36 MTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLV- 94
Query: 385 REKEKGPASLSVMQSRKNLM--RAHVVALVLDAEEVRAVEEGRGLVVI 430
E G + ++ K + R V L +D +V AV+E VVI
Sbjct: 95 ---EAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVI 139
>pdb|3DEF|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana,
Dimerization Deficient Mutant R130a
Length = 262
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 6/108 (5%)
Query: 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQ 384
+ + ++G+ VGKS+ +N+L+ E V V P V V G T+ ++DT G +
Sbjct: 37 MTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLV- 95
Query: 385 REKEKGPASLSVMQSRKNLM--RAHVVALVLDAEEVRAVEEGRGLVVI 430
E G + ++ K + R V L +D +V AV+E VVI
Sbjct: 96 ---EAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVI 140
>pdb|3I8S|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8X|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I92|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
Length = 274
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 73/178 (41%), Gaps = 24/178 (13%)
Query: 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQ 384
L + ++G PN GK+TL N L R VG AG+T + F V LVD G
Sbjct: 4 LTIGLIGNPNSGKTTLFNQLTGS-RQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYS 62
Query: 385 REKEKGPASLSVMQSRKNLMR--AHVVALVLDAEEVR--------AVEEGRGLVVIVNKM 434
SL + ++ A ++ V+DA + +E G +V +N +
Sbjct: 63 LTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNML 122
Query: 435 DLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQ 492
D+ K+ + EI + ++ G PV+ + GRG I + ID Y+
Sbjct: 123 DIAE-----------KQNIRIEIDALSARL-GCPVIPLVSTRGRG-IEALKLAIDRYK 167
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 122 TVMIIGRPNVGKSALFNRLIRRRE 145
T+ +IG PN GK+ LFN+L R+
Sbjct: 5 TIGLIGNPNSGKTTLFNQLTGSRQ 28
>pdb|3HYT|A Chain A, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|B Chain B, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|C Chain C, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
Length = 270
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 73/178 (41%), Gaps = 24/178 (13%)
Query: 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQ 384
L + ++G PN GK+TL N L R VG AG+T + F V LVD G
Sbjct: 4 LTIGLIGNPNSGKTTLFNQ-LTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYS 62
Query: 385 REKEKGPASLSVMQSRKNLMR--AHVVALVLDAEEVR--------AVEEGRGLVVIVNKM 434
SL + ++ A ++ V+DA + +E G +V +N +
Sbjct: 63 LTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNML 122
Query: 435 DLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQ 492
D+ K+ + EI + ++ G PV+ + GRG I + ID Y+
Sbjct: 123 DIAE-----------KQNIRIEIDALSARL-GCPVIPLVSTRGRG-IEALKLAIDRYK 167
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 122 TVMIIGRPNVGKSALFNRLIRRRE 145
T+ +IG PN GK+ LFN+L R+
Sbjct: 5 TIGLIGNPNSGKTTLFNQLTGSRQ 28
>pdb|3DM5|A Chain A, Structures Of Srp54 And Srp19, The Two Proteins Assembling
The Ribonucleic Core Of The Signal Recognition Particle
From The Archaeon Pyrococcus Furiosus.
pdb|3DM5|B Chain B, Structures Of Srp54 And Srp19, The Two Proteins Assembling
The Ribonucleic Core Of The Signal Recognition Particle
From The Archaeon Pyrococcus Furiosus
Length = 443
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 72/169 (42%), Gaps = 21/169 (12%)
Query: 366 HFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDA-------EEV 418
+F+ +G + +VDTAG + +K A + M+ N++ H V LV+D +
Sbjct: 177 YFKSKGVDIIIVDTAGRHKEDK----ALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQA 232
Query: 419 RAVEEGRGL-VVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI----PVVFTS 473
A +E + +IV K+D S + AL P + ++ I P F S
Sbjct: 233 LAFKEATPIGSIIVTKLD-GSAKGGGALSAVAATGAPIKFIGTGEKIDDIEPFDPPRFVS 291
Query: 474 ALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWLRKVMGRHSWKDQSAQ 522
L G G I + + +K + + R+LR G+ + KD AQ
Sbjct: 292 RLLGLGDIQGLLEKFKELEKEV-EIKEEDIERFLR---GKFTLKDMYAQ 336
>pdb|1JAL|A Chain A, Ychf Protein (Hi0393)
pdb|1JAL|B Chain B, Ychf Protein (Hi0393)
Length = 363
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 323 LPLQLAIVGRPNVGKSTLLNALLQ 346
+ + IVG PNVGKSTL NAL +
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTK 24
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 125 IIGRPNVGKSALFNRLIR 142
I+G PNVGKS LFN L +
Sbjct: 7 IVGLPNVGKSTLFNALTK 24
>pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Gdp And Mg2+
Length = 262
Score = 32.0 bits (71), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 6/108 (5%)
Query: 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQ 384
+ + ++G+ VGKS+ +N+L+ E V V P V V G T+ ++DT G +
Sbjct: 37 MTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLV- 95
Query: 385 REKEKGPASLSVMQSRKNLM--RAHVVALVLDAEEVRAVEEGRGLVVI 430
E G + ++ K + R V L +D +V V+E VVI
Sbjct: 96 ---EAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYRVDELDKQVVI 140
>pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Mg2+ And Gmppnp
Length = 262
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 6/108 (5%)
Query: 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQ 384
+ + ++G+ VGKS+ +N+L+ E V V P V V G T+ ++DT G +
Sbjct: 37 MTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLV- 95
Query: 385 REKEKGPASLSVMQSRKNLM--RAHVVALVLDAEEVRAVEEGRGLVVI 430
E G + ++ K + R V L +D +V V+E VVI
Sbjct: 96 ---EAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYRVDELDKQVVI 140
>pdb|3IBY|A Chain A, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|B Chain B, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|C Chain C, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|D Chain D, Structure Of Cytosolic Domain Of L. Pneumophila Feob
Length = 256
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 11/166 (6%)
Query: 124 MIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETE 183
++IG PN GK+ LFN L + V N P VT + + G LG+ ++ D G+ +
Sbjct: 5 LLIGNPNCGKTTLFNALTNANQR-VGNWPG--VTVEKKTGEFLLGEHLIEITDLPGVYSL 61
Query: 184 ATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQI-KP-IVAM 241
+ + + + A + ++ +I+V H LE +L ++ KP +VA+
Sbjct: 62 VANAEGISQDEQIAAQSVIDLEYDC-IINVIDACH---LERHLYLTSQLFELGKPVVVAL 117
Query: 242 NKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEAL 287
N + + S+ ESL LG I I A +G+ L ++L
Sbjct: 118 NMMDIAEHRGISIDTEKLESL-LGCS-VIPIQAHKNIGIPALQQSL 161
>pdb|2OHF|A Chain A, Crystal Structure Of Human Ola1 In Complex With Amppcp
Length = 396
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 325 LQLAIVGRPNVGKSTLLNAL 344
L++ IVG PNVGKST N L
Sbjct: 23 LKIGIVGLPNVGKSTFFNVL 42
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 123 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVL 175
+ I+G PNVGKS FN ++ +A N P T D E + D RF L
Sbjct: 25 IGIVGLPNVGKSTFFN-VLTNSQASAENFP--FCTIDPNESRVPVPDERFDFL 74
>pdb|2WIA|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIA|B Chain B, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIB|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gdp Binding State
pdb|2WIB|B Chain B, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gdp Binding State
pdb|2WIC|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gmppnp Binding
State
Length = 267
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAG 381
L + ++G PN GK+TL N L R VG AG+T + F V LVD G
Sbjct: 4 LTVGLIGNPNSGKTTLFNQLTGA-RQRVGNWAGVTVERKEGIFATTDHQVTLVDLPG 59
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 122 TVMIIGRPNVGKSALFNRLIRRRE 145
TV +IG PN GK+ LFN+L R+
Sbjct: 5 TVGLIGNPNSGKTTLFNQLTGARQ 28
>pdb|3LUL|A Chain A, Crystal Structure Of Putative 4-Amino-4-Deoxychorismate
Lyase. (Yp_094631.1) From Legionella Pneumophila Subsp.
Pneumophila Str. Philadelphia 1 At 1.78 A Resolution
pdb|3LUL|B Chain B, Crystal Structure Of Putative 4-Amino-4-Deoxychorismate
Lyase. (Yp_094631.1) From Legionella Pneumophila Subsp.
Pneumophila Str. Philadelphia 1 At 1.78 A Resolution
Length = 272
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 7/103 (6%)
Query: 218 HPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETG 277
HP+ L WLR A + + ++N E++ ++A A ++L + + +
Sbjct: 120 HPVRLISINWLRDKANPLYQLXSVNYLEAIIAQRQAIAVGADDALFFNTENHVTETTCAN 179
Query: 278 LGMTELYEALRPSVEDYML------RVLNDSCTQNNSSTQDVT 314
L + E P VED +L R+++ C Q+ S Q+++
Sbjct: 180 LFLIENNILYTPRVEDGILPGITRARLIS-HCQQHKXSVQEIS 221
>pdb|1DMT|A Chain A, Structure Of Human Neutral Endopeptidase Complexed With
Phosphoramidon
pdb|1R1H|A Chain A, Structural Analysis Of Neprilysin With Various Specific
And Potent Inhibitors
pdb|1R1I|A Chain A, Structural Analysis Of Neprilysin With Various Specific
And Potent Inhibitors
pdb|1R1J|A Chain A, Structural Analysis Of Neprilysin With Various Specific
And Potent Inhibitors
pdb|1Y8J|A Chain A, Crystal Structure Of Human Nep Complexed With An
Imidazo[4,5- C]pyridine Inhibitor
pdb|2QPJ|A Chain A, Human Nep Complexed With A Bifunctional NepDPP IV
INHIBITOR
pdb|2YB9|A Chain A, Crystal Structure Of Human Neutral Endopeptidase Complexed
With A Heteroarylalanine Diacid
Length = 696
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 14/85 (16%)
Query: 57 YQVGSSLKCNLLPEVPR--GFCGVVQNE---ALEDTHVEPEPDGVVEDHKVKPLYEKPVD 111
Y G LK N++PE G ++++E L+D EP+ + +V K K LY ++
Sbjct: 32 YACGGWLKRNVIPETSSRYGNFDILRDELEVVLKDVLQEPKTEDIVAVQKAKALYRSCIN 91
Query: 112 FTKID-------INLLPTVMIIGRP 129
+ ID + LLP I G P
Sbjct: 92 ESAIDSRGGEPLLKLLPD--IYGWP 114
>pdb|3TCS|A Chain A, Crystal Structure Of A Putative Racemase From Roseobacter
Denitrificans
pdb|3TCS|B Chain B, Crystal Structure Of A Putative Racemase From Roseobacter
Denitrificans
Length = 388
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Query: 369 YQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLD------AEEVRAVE 422
Y R + VDTA W R K++G V+ L+RA+ ++ D AE ++ +
Sbjct: 99 YLRRAMAGVDTAIWDLRGKQQGKPVAEVLGGTPGLIRAYASSMKRDITPRDEAERLKRLR 158
Query: 423 EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVP 454
+ +G + GR R +E +P
Sbjct: 159 DTQGFTAFKVRAGAEVGRNRDEWPGRTEEIIP 190
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 13/60 (21%)
Query: 327 LAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQRE 386
+A+VG+ GKS+LL+ALL E D V H +G Y+ A W+Q +
Sbjct: 34 VAVVGQVGCGKSSLLSALLAE------------MDKVEGHVAIKGSVAYVPQQA-WIQND 80
>pdb|1T9H|A Chain A, The Crystal Structure Of Yloq, A Circularly Permuted
Gtpase
Length = 307
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 11/58 (18%)
Query: 329 IVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHF---EYQGRTVYLVDTAGWL 383
G+ VGKS+LLNA + PE GL + + H ++ R V L+ T+G L
Sbjct: 178 FAGQSGVGKSSLLNA--------ISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGL 227
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 11/96 (11%)
Query: 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSA 178
L + +IG VGK+ NR++ R YN V + + ++F V D+A
Sbjct: 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTA 69
Query: 179 GLETEAT---------SGSIL--DRTAGMTANVLAK 203
G E +A SG+IL D T+ +T LA+
Sbjct: 70 GQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLAR 105
>pdb|3B1V|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Mgmppnp
pdb|3B1W|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|C Chain C, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|D Chain D, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
Length = 272
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 70/165 (42%), Gaps = 30/165 (18%)
Query: 326 QLAIVGRPNVGKSTLLNALL-QEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQ 384
++A++G PN GK++L N + RV P + R S V + + + + D G
Sbjct: 5 EIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVK---KNKDLEIQDLPGIYS 61
Query: 385 REKEKGPASLSVMQSRKNLM--RAHVVALVLDAEEV--------RAVEEGRGLVVIVNKM 434
P S +R L+ RA + V+DA + + +E G + + +N +
Sbjct: 62 M----SPYSPEAKVARDYLLSQRADSILNVVDATNLERNLYLTTQLIETGIPVTIALNMI 117
Query: 435 DLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRG 479
D+L G+ ++ + G+PVV TSAL+ G
Sbjct: 118 DVLDGQGKKINVDKLSYHL------------GVPVVATSALKQTG 150
>pdb|3B1Y|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35a Mutant
Bound To Gdp
Length = 272
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 70/165 (42%), Gaps = 30/165 (18%)
Query: 326 QLAIVGRPNVGKSTLLNALL-QEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQ 384
++A++G PN GK++L N + RV P + R S V + + + + D G
Sbjct: 5 EIALIGNPNSGKTSLFNLITGHNQRVGNWPGVAVERKSGLVK---KNKDLEIQDLPGIYS 61
Query: 385 REKEKGPASLSVMQSRKNLM--RAHVVALVLDAEEV--------RAVEEGRGLVVIVNKM 434
P S +R L+ RA + V+DA + + +E G + + +N +
Sbjct: 62 M----SPYSPEEKVARDYLLSQRADSILNVVDATNLERNLYLTTQLIETGIPVTIALNMI 117
Query: 435 DLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRG 479
D+L G+ ++ + G+PVV TSAL+ G
Sbjct: 118 DVLDGQGKKINVDKLSYHL------------GVPVVATSALKQTG 150
>pdb|2QNR|A Chain A, Human Septin 2 In Complex With Gdp
pdb|2QNR|B Chain B, Human Septin 2 In Complex With Gdp
Length = 301
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 10/70 (14%)
Query: 323 LPLQLAIVGRPNVGKSTLLNALLQED----RVLVGPEAGLTR----DSVRVHFEYQGRTV 374
L +VG +GKSTL+N+L D RV+ G + R ++ V E +G +
Sbjct: 17 FEFTLXVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKL 76
Query: 375 YL--VDTAGW 382
L VDT G+
Sbjct: 77 RLTVVDTPGY 86
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 72/173 (41%), Gaps = 27/173 (15%)
Query: 123 VMIIGRPNVGKSALFNRLIRRREALVYN--TPDDHVTRDIREGLAKLGDLRFKVLDSAGL 180
++++G P VGKSAL +LI+ Y+ D + + + +G L D +LD+AG
Sbjct: 6 LVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLD----ILDTAGQ 61
Query: 181 ETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVA 240
E + RT V A F +H ++ + K + + ++
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSF-----EDIHQYREQIKRV--KDSDDVPMVLV 114
Query: 241 MNKCESLHNGTGSLAGAAAES-----LMLGFGDP-IAISAETGLGMTELYEAL 287
NKC+ LAG ES L +G P I SA+T G+ + + L
Sbjct: 115 GNKCD--------LAGRTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|3B1Z|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35s Mutant
Without Nucleotide
Length = 272
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 70/165 (42%), Gaps = 30/165 (18%)
Query: 326 QLAIVGRPNVGKSTLLNALL-QEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQ 384
++A++G PN GK++L N + RV P + R S V + + + + D G
Sbjct: 5 EIALIGNPNSGKTSLFNLITGHNQRVGNWPGVSVERKSGLVK---KNKDLEIQDLPGIYS 61
Query: 385 REKEKGPASLSVMQSRKNLM--RAHVVALVLDAEEV--------RAVEEGRGLVVIVNKM 434
P S +R L+ RA + V+DA + + +E G + + +N +
Sbjct: 62 M----SPYSPEEKVARDYLLSQRADSILNVVDATNLERNLYLTTQLIETGIPVTIALNMI 117
Query: 435 DLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRG 479
D+L G+ ++ + G+PVV TSAL+ G
Sbjct: 118 DVLDGQGKKINVDKLSYHL------------GVPVVATSALKQTG 150
>pdb|1WDT|A Chain A, Crystal Structure Of Ttk003000868 From Thermus
Thermophilus Hb8
pdb|2DY1|A Chain A, Crystal Structure Of Ef-G-2 From Thermus Thermophilus
Length = 665
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 17/73 (23%)
Query: 327 LAIVGRPNVGKSTLLNALL-------QEDRVLVG-------PEAGLTRDSVRVHFE---Y 369
+A+VG GK+TL ALL + RV G PEA L R +VR +
Sbjct: 12 VALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF 71
Query: 370 QGRTVYLVDTAGW 382
+G V+L+D G+
Sbjct: 72 RGHRVFLLDAPGY 84
>pdb|3B1X|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
pdb|3B1X|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
Length = 272
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 71/165 (43%), Gaps = 30/165 (18%)
Query: 326 QLAIVGRPNVGKSTLLNALL-QEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQ 384
++A++G PN GK++L N + RV P + R S V + + + + D G
Sbjct: 5 EIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVK---KNKDLEIQDLPGIYS 61
Query: 385 REKEKGPASLSVMQSRKNLM--RAHVVALVLDAEEV--------RAVEEGRGLVVIVNKM 434
P S + +R L+ RA + V+DA + + +E G + + +N +
Sbjct: 62 M----SPYSPAEKVARDYLLSQRADSILNVVDATNLERNLYLTTQLIETGIPVTIALNMI 117
Query: 435 DLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRG 479
D+L G+ ++ + G+PVV TSAL+ G
Sbjct: 118 DVLDGQGKKINVDKLSYHL------------GVPVVATSALKQTG 150
>pdb|1SUL|A Chain A, Crystal Structure Of The Apo-Ysxc
pdb|1SUL|B Chain B, Crystal Structure Of The Apo-Ysxc
pdb|1SVI|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ysxc
Complexed With Gdp
pdb|1SVW|A Chain A, Crystal Structure Of Ysxc Complexed With Gmppnp
pdb|1SVW|B Chain B, Crystal Structure Of Ysxc Complexed With Gmppnp
Length = 195
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Query: 320 ESKLPLQLAIVGRPNVGKSTLLNALLQ 346
E LP ++A+ GR NVGKS+ +N+L+
Sbjct: 20 EGGLP-EIALAGRSNVGKSSFINSLIN 45
>pdb|2QAG|A Chain A, Crystal Structure Of Human Septin Trimer 267
Length = 361
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 327 LAIVGRPNVGKSTLLNALLQED----RVLVGPEAGLTR----DSVRVHFEYQGRTVYL-- 376
L +VG +GKSTL+N+L D RV+ G + R ++ V E +G + L
Sbjct: 40 LMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTV 99
Query: 377 VDTAGW 382
VDT G+
Sbjct: 100 VDTPGY 105
>pdb|3LX5|A Chain A, Crystal Structure Of Mgmppnp-Bound Nfeob From S.
Thermophilus
pdb|3LX8|A Chain A, Crystal Structure Of Gdp-Bound Nfeob From S. Thermophilus
pdb|3SS8|A Chain A, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
pdb|3SS8|B Chain B, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
Length = 272
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 70/165 (42%), Gaps = 30/165 (18%)
Query: 326 QLAIVGRPNVGKSTLLNALL-QEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQ 384
++A++G PN GK++L N + RV P + R S V + + + + D G
Sbjct: 5 EIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVK---KNKDLEIQDLPGIYS 61
Query: 385 REKEKGPASLSVMQSRKNLM--RAHVVALVLDAEEV--------RAVEEGRGLVVIVNKM 434
P S +R L+ RA + V+DA + + +E G + + +N +
Sbjct: 62 M----SPYSPEEKVARDYLLSQRADSILNVVDATNLERNLYLTTQLIETGIPVTIALNMI 117
Query: 435 DLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRG 479
D+L G+ ++ + G+PVV TSAL+ G
Sbjct: 118 DVLDGQGKKINVDKLSYHL------------GVPVVATSALKQTG 150
>pdb|2QA5|A Chain A, Crystal Structure Of Sept2 G-Domain
pdb|2QA5|B Chain B, Crystal Structure Of Sept2 G-Domain
Length = 315
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 10/70 (14%)
Query: 323 LPLQLAIVGRPNVGKSTLLNALLQED----RVLVGPEAGLTR----DSVRVHFEYQGRTV 374
L +VG +GKSTL+N+L D RV+ G + R ++ V E +G +
Sbjct: 36 FEFTLXVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKL 95
Query: 375 YL--VDTAGW 382
L VDT G+
Sbjct: 96 RLTVVDTPGY 105
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 71/168 (42%), Gaps = 17/168 (10%)
Query: 123 VMIIGRPNVGKSALFNRLIRRREALVYN--TPDDHVTRDIREGLAKLGDLRFKVLDSAGL 180
++++G P VGKSAL +LI+ Y+ D + + + +G L D +LD+AG
Sbjct: 6 LVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLD----ILDTAGQ 61
Query: 181 ETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVA 240
E + RT V A F +H ++ + K + + ++
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSF-----EDIHQYREQIKRV--KDSDDVPMVLV 114
Query: 241 MNKCESLHNGTGSLAGAAAESLMLGFGDP-IAISAETGLGMTELYEAL 287
NKC+ ++ A+ L +G P I SA+T G+ + + L
Sbjct: 115 GNKCDL---AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|3FTQ|A Chain A, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|B Chain B, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|C Chain C, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|D Chain D, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
Length = 274
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 10/70 (14%)
Query: 323 LPLQLAIVGRPNVGKSTLLNALLQED----RVLVGPEAGLTR----DSVRVHFEYQGRTV 374
L +VG +GKSTL+N+L D R++ G + R ++ V E +G +
Sbjct: 4 FEFTLMVVGESGLGKSTLINSLFLTDLYPERIIPGAAEKIERTVQIEASTVEIEERGVKL 63
Query: 375 YL--VDTAGW 382
L VDT G+
Sbjct: 64 RLTVVDTPGY 73
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 22/78 (28%)
Query: 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSV--------------------- 363
+++ ++G N GK+TLL L ED + P G SV
Sbjct: 17 VRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPY 76
Query: 364 -RVHFEYQGRTVYLVDTA 380
R +FE +Y++D+A
Sbjct: 77 WRSYFENTDILIYVIDSA 94
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 22/78 (28%)
Query: 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSV--------------------- 363
+++ ++G N GK+TLL L ED + P G SV
Sbjct: 18 VRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPY 77
Query: 364 -RVHFEYQGRTVYLVDTA 380
R +FE +Y++D+A
Sbjct: 78 WRSYFENTDILIYVIDSA 95
>pdb|3EC1|A Chain A, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
pdb|3EC1|B Chain B, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
Length = 369
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Query: 329 IVGRPNVGKSTLLNALLQE-----DRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWL 383
+VG NVGKST +N +++E + + G T D + + E G T+Y DT G +
Sbjct: 167 VVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLE-SGATLY--DTPGII 223
Query: 384 QREK 387
+
Sbjct: 224 NHHQ 227
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,162,519
Number of Sequences: 62578
Number of extensions: 713380
Number of successful extensions: 2591
Number of sequences better than 100.0: 85
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 2440
Number of HSP's gapped (non-prelim): 154
length of query: 607
length of database: 14,973,337
effective HSP length: 104
effective length of query: 503
effective length of database: 8,465,225
effective search space: 4258008175
effective search space used: 4258008175
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)