Query 007334
Match_columns 607
No_of_seqs 629 out of 5453
Neff 8.4
Searched_HMMs 46136
Date Thu Mar 28 22:10:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007334.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007334hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1160 Predicted GTPases [Gen 100.0 1.8E-90 3.9E-95 710.4 46.8 428 121-583 4-443 (444)
2 PRK03003 GTP-binding protein D 100.0 9.6E-73 2.1E-77 614.6 50.2 421 119-580 37-469 (472)
3 TIGR03594 GTPase_EngA ribosome 100.0 2.8E-71 6E-76 600.3 49.4 417 122-576 1-429 (429)
4 PRK00093 GTP-binding protein D 100.0 2.3E-70 4.9E-75 593.8 51.5 418 121-578 2-431 (435)
5 PRK09518 bifunctional cytidyla 100.0 8.4E-69 1.8E-73 609.2 51.1 423 119-580 274-708 (712)
6 COG2262 HflX GTPases [General 100.0 4E-38 8.6E-43 319.1 11.9 249 31-293 92-357 (411)
7 PRK11058 GTPase HflX; Provisio 100.0 1.3E-35 2.8E-40 316.1 14.7 249 31-292 97-362 (426)
8 TIGR03156 GTP_HflX GTP-binding 100.0 6.4E-34 1.4E-38 296.7 14.7 245 31-290 89-350 (351)
9 KOG1191 Mitochondrial GTPase [ 100.0 4.9E-35 1.1E-39 300.1 1.8 423 106-602 61-531 (531)
10 KOG0410 Predicted GTP binding 100.0 2.3E-30 5.1E-35 252.1 4.8 246 30-293 78-342 (410)
11 COG1160 Predicted GTPases [Gen 99.9 9.1E-27 2E-31 240.3 12.7 216 325-584 4-241 (444)
12 PF02421 FeoB_N: Ferrous iron 99.9 2.5E-26 5.3E-31 210.0 13.5 146 325-487 1-156 (156)
13 COG1159 Era GTPase [General fu 99.9 1.6E-25 3.5E-30 219.4 16.7 167 121-293 7-173 (298)
14 COG0486 ThdF Predicted GTPase 99.9 1.6E-24 3.5E-29 224.3 17.7 154 323-494 216-378 (454)
15 PF02421 FeoB_N: Ferrous iron 99.9 3.5E-24 7.5E-29 195.9 15.6 153 122-287 2-156 (156)
16 PRK05291 trmE tRNA modificatio 99.9 5.3E-25 1.2E-29 237.6 11.3 224 49-292 133-370 (449)
17 COG1159 Era GTPase [General fu 99.9 1E-23 2.2E-28 206.7 14.7 165 325-501 7-181 (298)
18 COG0486 ThdF Predicted GTPase 99.9 2.5E-23 5.4E-28 215.5 17.7 161 120-293 217-377 (454)
19 TIGR00436 era GTP-binding prot 99.9 3.9E-23 8.5E-28 209.6 18.2 164 122-293 2-165 (270)
20 PF14714 KH_dom-like: KH-domai 99.9 2.5E-23 5.3E-28 167.9 8.3 80 497-576 1-80 (80)
21 KOG0084 GTPase Rab1/YPT1, smal 99.9 2.1E-22 4.5E-27 184.5 14.9 161 119-294 8-174 (205)
22 cd01858 NGP_1 NGP-1. Autoanti 99.9 2.3E-22 5.1E-27 187.2 15.0 156 197-382 2-157 (157)
23 TIGR00436 era GTP-binding prot 99.9 1.8E-22 3.8E-27 204.8 15.2 155 326-493 2-165 (270)
24 cd01894 EngA1 EngA1 subfamily. 99.9 7.4E-22 1.6E-26 182.8 18.1 156 124-290 1-156 (157)
25 PRK15494 era GTPase Era; Provi 99.9 1.1E-21 2.4E-26 204.5 18.7 165 120-293 52-217 (339)
26 KOG1490 GTP-binding protein CR 99.9 1.2E-23 2.5E-28 215.9 3.7 277 3-292 40-341 (620)
27 PRK12299 obgE GTPase CgtA; Rev 99.9 2E-21 4.4E-26 201.1 20.0 172 115-293 153-329 (335)
28 cd01878 HflX HflX subfamily. 99.9 2.9E-22 6.2E-27 194.9 11.9 191 87-290 2-203 (204)
29 KOG0078 GTP-binding protein SE 99.9 2.6E-21 5.6E-26 180.2 17.0 163 117-293 9-175 (207)
30 KOG0098 GTPase Rab2, small G p 99.9 2.2E-21 4.7E-26 175.4 15.6 160 119-294 5-170 (216)
31 cd01895 EngA2 EngA2 subfamily. 99.9 4.9E-21 1.1E-25 180.1 18.2 161 324-490 2-173 (174)
32 cd01897 NOG NOG1 is a nucleola 99.9 3.2E-21 7E-26 181.2 16.8 163 121-291 1-167 (168)
33 PRK00089 era GTPase Era; Revie 99.9 3.8E-21 8.1E-26 197.7 18.2 166 121-293 6-172 (292)
34 COG0218 Predicted GTPase [Gene 99.9 8.2E-21 1.8E-25 176.9 18.1 171 113-292 17-197 (200)
35 cd04171 SelB SelB subfamily. 99.9 5.3E-21 1.1E-25 178.6 16.9 155 122-289 2-163 (164)
36 KOG0092 GTPase Rab5/YPT51 and 99.9 6.9E-22 1.5E-26 180.4 10.4 160 120-293 5-168 (200)
37 cd01864 Rab19 Rab19 subfamily. 99.9 1.1E-20 2.3E-25 177.3 17.7 158 120-290 3-164 (165)
38 KOG0084 GTPase Rab1/YPT1, smal 99.9 3E-21 6.5E-26 176.9 13.0 151 323-495 8-175 (205)
39 cd04121 Rab40 Rab40 subfamily. 99.9 1.2E-20 2.7E-25 180.6 17.9 160 120-293 6-168 (189)
40 cd04120 Rab12 Rab12 subfamily. 99.9 1.3E-20 2.8E-25 182.3 17.9 158 122-293 2-164 (202)
41 cd04136 Rap_like Rap-like subf 99.9 8.4E-21 1.8E-25 177.2 16.1 155 121-290 2-161 (163)
42 cd01865 Rab3 Rab3 subfamily. 99.9 1.7E-20 3.7E-25 176.0 17.8 156 121-292 2-163 (165)
43 COG1084 Predicted GTPase [Gene 99.9 7.5E-22 1.6E-26 195.0 8.6 269 4-290 41-334 (346)
44 PRK03003 GTP-binding protein D 99.9 9.5E-21 2.1E-25 206.7 18.0 169 120-293 211-383 (472)
45 cd04145 M_R_Ras_like M-Ras/R-R 99.9 2.3E-20 4.9E-25 174.5 17.7 156 121-291 3-163 (164)
46 cd01861 Rab6 Rab6 subfamily. 99.9 2.6E-20 5.7E-25 173.6 17.8 155 122-290 2-160 (161)
47 cd04109 Rab28 Rab28 subfamily. 99.9 2.2E-20 4.9E-25 183.1 17.9 158 122-293 2-167 (215)
48 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.8 1.3E-20 2.9E-25 171.8 14.6 157 121-293 23-186 (221)
49 cd04140 ARHI_like ARHI subfami 99.8 1.8E-20 4E-25 175.8 16.1 154 121-289 2-162 (165)
50 cd04106 Rab23_lke Rab23-like s 99.8 3E-20 6.5E-25 173.4 17.4 154 122-289 2-160 (162)
51 PRK15494 era GTPase Era; Provi 99.8 9.9E-21 2.2E-25 197.4 15.3 157 323-493 51-217 (339)
52 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.8 3.4E-20 7.3E-25 174.0 17.5 155 121-291 3-163 (166)
53 COG0370 FeoB Fe2+ transport sy 99.8 1.2E-20 2.5E-25 203.6 16.1 153 325-494 4-166 (653)
54 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 2.9E-20 6.2E-25 174.5 16.8 156 121-291 1-165 (168)
55 cd01868 Rab11_like Rab11-like. 99.8 3.7E-20 7.9E-25 173.5 17.5 155 120-290 3-163 (165)
56 KOG0078 GTP-binding protein SE 99.8 1E-20 2.2E-25 176.3 13.3 150 322-493 10-175 (207)
57 smart00173 RAS Ras subfamily o 99.8 2.7E-20 5.9E-25 174.1 16.6 156 122-292 2-162 (164)
58 PRK12299 obgE GTPase CgtA; Rev 99.8 1.5E-20 3.3E-25 194.6 15.9 154 325-493 159-329 (335)
59 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.8 4.1E-20 9E-25 174.7 17.5 157 121-292 3-164 (172)
60 cd04142 RRP22 RRP22 subfamily. 99.8 3.7E-20 7.9E-25 179.0 17.5 164 122-291 2-173 (198)
61 cd01898 Obg Obg subfamily. Th 99.8 2.1E-20 4.5E-25 175.9 15.3 161 122-290 2-169 (170)
62 cd04144 Ras2 Ras2 subfamily. 99.8 2.9E-20 6.2E-25 178.8 16.6 157 122-293 1-164 (190)
63 cd04107 Rab32_Rab38 Rab38/Rab3 99.8 6.4E-20 1.4E-24 178.0 19.2 160 121-293 1-169 (201)
64 cd01866 Rab2 Rab2 subfamily. 99.8 5.3E-20 1.1E-24 173.2 18.0 157 120-292 4-166 (168)
65 cd01890 LepA LepA subfamily. 99.8 2.6E-20 5.7E-25 176.9 16.0 155 122-292 2-177 (179)
66 cd04138 H_N_K_Ras_like H-Ras/N 99.8 4.6E-20 1E-24 171.7 17.2 154 121-290 2-160 (162)
67 TIGR03156 GTP_HflX GTP-binding 99.8 1.2E-20 2.7E-25 196.9 14.7 146 324-489 189-349 (351)
68 cd04122 Rab14 Rab14 subfamily. 99.8 5.8E-20 1.3E-24 172.5 17.8 155 121-291 3-163 (166)
69 cd04127 Rab27A Rab27a subfamil 99.8 4.9E-20 1.1E-24 175.3 17.5 159 120-292 4-177 (180)
70 cd04175 Rap1 Rap1 subgroup. T 99.8 4.2E-20 9E-25 173.0 16.6 156 121-291 2-162 (164)
71 cd01867 Rab8_Rab10_Rab13_like 99.8 5.9E-20 1.3E-24 172.7 17.5 158 120-291 3-164 (167)
72 cd04112 Rab26 Rab26 subfamily. 99.8 6.2E-20 1.3E-24 176.6 17.7 159 122-293 2-164 (191)
73 cd04142 RRP22 RRP22 subfamily. 99.8 2.8E-20 6E-25 179.8 15.3 159 325-496 1-178 (198)
74 TIGR02729 Obg_CgtA Obg family 99.8 6.5E-20 1.4E-24 189.9 18.8 168 115-291 152-328 (329)
75 PRK12296 obgE GTPase CgtA; Rev 99.8 2.6E-20 5.6E-25 199.7 16.2 162 325-502 160-350 (500)
76 PRK05291 trmE tRNA modificatio 99.8 2.4E-20 5.3E-25 201.4 16.0 150 323-493 214-371 (449)
77 PRK12296 obgE GTPase CgtA; Rev 99.8 8.3E-20 1.8E-24 195.8 19.9 171 115-293 154-341 (500)
78 TIGR03594 GTPase_EngA ribosome 99.8 8E-20 1.7E-24 198.2 19.8 169 120-293 172-345 (429)
79 cd01855 YqeH YqeH. YqeH is an 99.8 2.5E-20 5.3E-25 179.2 14.1 152 193-382 24-190 (190)
80 cd04110 Rab35 Rab35 subfamily. 99.8 1.5E-19 3.3E-24 175.1 19.6 160 120-293 6-168 (199)
81 cd04120 Rab12 Rab12 subfamily. 99.8 3.6E-20 7.9E-25 179.1 15.2 147 325-493 1-164 (202)
82 cd01895 EngA2 EngA2 subfamily. 99.8 1.3E-19 2.9E-24 170.3 18.6 166 120-289 2-172 (174)
83 PRK12298 obgE GTPase CgtA; Rev 99.8 7.4E-20 1.6E-24 193.2 18.6 169 117-293 156-334 (390)
84 TIGR00450 mnmE_trmE_thdF tRNA 99.8 5.3E-20 1.2E-24 197.6 17.6 152 323-494 202-362 (442)
85 cd04176 Rap2 Rap2 subgroup. T 99.8 6E-20 1.3E-24 171.7 15.7 155 121-290 2-161 (163)
86 PRK00093 GTP-binding protein D 99.8 8.5E-20 1.9E-24 198.2 19.2 168 120-293 173-345 (435)
87 cd01874 Cdc42 Cdc42 subfamily. 99.8 7.5E-20 1.6E-24 173.5 16.4 155 121-289 2-172 (175)
88 cd04119 RJL RJL (RabJ-Like) su 99.8 8.9E-20 1.9E-24 170.9 16.7 156 122-291 2-166 (168)
89 PRK12297 obgE GTPase CgtA; Rev 99.8 1.9E-19 4.1E-24 191.0 21.0 167 116-293 154-328 (424)
90 smart00175 RAB Rab subfamily o 99.8 1.4E-19 3.1E-24 169.0 17.8 155 122-292 2-162 (164)
91 cd01859 MJ1464 MJ1464. This f 99.8 6.4E-20 1.4E-24 170.5 15.4 153 195-382 4-156 (156)
92 cd04124 RabL2 RabL2 subfamily. 99.8 8.6E-20 1.9E-24 170.6 16.3 154 122-292 2-158 (161)
93 cd04164 trmE TrmE (MnmE, ThdF, 99.8 1.2E-19 2.5E-24 167.9 17.0 146 325-490 2-155 (157)
94 KOG0092 GTPase Rab5/YPT51 and 99.8 1E-20 2.2E-25 172.8 9.6 147 324-492 5-167 (200)
95 cd04164 trmE TrmE (MnmE, ThdF, 99.8 1.6E-19 3.4E-24 167.1 17.7 154 121-290 2-155 (157)
96 cd04145 M_R_Ras_like M-Ras/R-R 99.8 4.9E-20 1.1E-24 172.2 14.4 144 325-491 3-163 (164)
97 cd01898 Obg Obg subfamily. Th 99.8 5.1E-20 1.1E-24 173.3 14.6 150 326-490 2-169 (170)
98 cd04113 Rab4 Rab4 subfamily. 99.8 1.4E-19 3E-24 168.9 17.4 155 122-290 2-160 (161)
99 TIGR03596 GTPase_YlqF ribosome 99.8 5.5E-20 1.2E-24 186.8 15.8 167 192-385 10-176 (276)
100 cd01849 YlqF_related_GTPase Yl 99.8 7E-20 1.5E-24 170.1 15.1 154 205-382 1-155 (155)
101 cd04171 SelB SelB subfamily. 99.8 7.4E-20 1.6E-24 170.8 15.4 147 326-488 2-162 (164)
102 cd01879 FeoB Ferrous iron tran 99.8 5.4E-20 1.2E-24 170.7 14.3 145 329-490 1-155 (158)
103 cd01856 YlqF YlqF. Proteins o 99.8 1.2E-19 2.5E-24 171.4 16.7 163 192-382 8-170 (171)
104 cd01860 Rab5_related Rab5-rela 99.8 1.1E-19 2.5E-24 169.6 16.4 157 121-291 2-162 (163)
105 cd04133 Rop_like Rop subfamily 99.8 8.1E-20 1.8E-24 173.0 15.4 157 121-291 2-172 (176)
106 PTZ00369 Ras-like protein; Pro 99.8 9.2E-20 2E-24 175.1 16.0 160 120-294 5-169 (189)
107 cd04126 Rab20 Rab20 subfamily. 99.8 1.4E-19 3E-24 177.1 17.0 158 122-295 2-193 (220)
108 cd01897 NOG NOG1 is a nucleola 99.8 1.2E-19 2.7E-24 170.4 15.9 149 326-490 2-166 (168)
109 cd04121 Rab40 Rab40 subfamily. 99.8 1.1E-19 2.5E-24 174.0 15.8 148 324-493 6-168 (189)
110 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.8 1.8E-19 3.8E-24 171.7 17.1 156 120-289 5-177 (182)
111 cd04163 Era Era subfamily. Er 99.8 3.6E-19 7.8E-24 165.9 18.8 164 120-290 3-167 (168)
112 cd04131 Rnd Rnd subfamily. Th 99.8 1.8E-19 3.8E-24 171.3 16.8 155 121-289 2-173 (178)
113 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.8 2.4E-19 5.1E-24 176.5 18.2 159 120-292 13-188 (232)
114 cd04101 RabL4 RabL4 (Rab-like4 99.8 2.8E-19 6E-24 167.3 17.9 157 122-290 2-162 (164)
115 TIGR00450 mnmE_trmE_thdF tRNA 99.8 1.9E-19 4E-24 193.4 18.9 160 119-293 202-361 (442)
116 PRK09563 rbgA GTPase YlqF; Rev 99.8 8.1E-20 1.8E-24 186.6 15.4 167 192-385 13-179 (287)
117 cd01894 EngA1 EngA1 subfamily. 99.8 1.1E-19 2.5E-24 168.1 15.0 146 328-490 1-156 (157)
118 PLN03118 Rab family protein; P 99.8 1.9E-19 4E-24 176.1 17.2 159 120-293 14-178 (211)
119 cd04117 Rab15 Rab15 subfamily. 99.8 3.4E-19 7.3E-24 166.6 17.9 153 122-290 2-160 (161)
120 cd01871 Rac1_like Rac1-like su 99.8 1.9E-19 4.2E-24 170.5 16.4 155 121-289 2-172 (174)
121 cd01857 HSR1_MMR1 HSR1/MMR1. 99.8 1.7E-19 3.8E-24 164.6 15.3 137 195-383 3-139 (141)
122 cd04136 Rap_like Rap-like subf 99.8 8.7E-20 1.9E-24 170.3 13.7 143 325-490 2-161 (163)
123 TIGR03598 GTPase_YsxC ribosome 99.8 2.6E-19 5.5E-24 170.5 17.1 160 115-281 13-179 (179)
124 cd04175 Rap1 Rap1 subgroup. T 99.8 8.9E-20 1.9E-24 170.8 13.7 144 325-491 2-162 (164)
125 PRK00089 era GTPase Era; Revie 99.8 1.6E-19 3.5E-24 185.5 16.7 156 325-492 6-171 (292)
126 cd04125 RabA_like RabA-like su 99.8 2.7E-19 5.9E-24 171.6 17.1 159 121-293 1-163 (188)
127 smart00174 RHO Rho (Ras homolo 99.8 9.2E-20 2E-24 172.3 13.7 155 123-291 1-171 (174)
128 TIGR02729 Obg_CgtA Obg family 99.8 1.6E-19 3.5E-24 186.9 16.6 151 325-491 158-328 (329)
129 cd04132 Rho4_like Rho4-like su 99.8 3.5E-19 7.6E-24 170.6 17.7 158 122-293 2-168 (187)
130 KOG0087 GTPase Rab11/YPT3, sma 99.8 9.6E-20 2.1E-24 168.7 13.0 160 119-294 13-178 (222)
131 cd04138 H_N_K_Ras_like H-Ras/N 99.8 3.1E-19 6.7E-24 166.1 16.7 142 325-490 2-160 (162)
132 cd01875 RhoG RhoG subfamily. 99.8 3.1E-19 6.8E-24 171.7 17.2 157 121-291 4-176 (191)
133 cd01891 TypA_BipA TypA (tyrosi 99.8 2.3E-19 5E-24 173.1 16.3 149 120-283 2-173 (194)
134 PRK09518 bifunctional cytidyla 99.8 1.9E-19 4.2E-24 205.4 18.5 170 119-293 449-622 (712)
135 cd04143 Rhes_like Rhes_like su 99.8 4.4E-19 9.6E-24 176.9 18.7 156 122-291 2-170 (247)
136 cd04139 RalA_RalB RalA/RalB su 99.8 3.8E-19 8.2E-24 166.0 17.2 156 121-291 1-161 (164)
137 smart00173 RAS Ras subfamily o 99.8 1.3E-19 2.9E-24 169.5 14.0 145 325-492 1-162 (164)
138 PRK00454 engB GTP-binding prot 99.8 5.2E-19 1.1E-23 170.7 18.6 172 113-292 17-194 (196)
139 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.8 5.6E-20 1.2E-24 167.8 10.9 147 324-492 22-185 (221)
140 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.8 1.6E-19 3.5E-24 169.4 14.5 146 325-492 3-164 (166)
141 cd01862 Rab7 Rab7 subfamily. 99.8 5.4E-19 1.2E-23 166.5 18.1 159 122-293 2-168 (172)
142 cd04111 Rab39 Rab39 subfamily. 99.8 3.4E-19 7.4E-24 174.1 17.3 159 121-295 3-169 (211)
143 KOG0079 GTP-binding protein H- 99.8 8.3E-20 1.8E-24 158.5 11.2 159 119-293 7-170 (198)
144 cd04134 Rho3 Rho3 subfamily. 99.8 1.4E-19 3E-24 173.9 13.9 157 122-292 2-174 (189)
145 PLN03110 Rab GTPase; Provision 99.8 5.4E-19 1.2E-23 173.4 18.3 161 120-294 12-176 (216)
146 cd04149 Arf6 Arf6 subfamily. 99.8 3.9E-19 8.5E-24 167.4 16.6 151 120-289 9-167 (168)
147 cd01892 Miro2 Miro2 subfamily. 99.8 1.6E-19 3.5E-24 170.2 13.8 158 120-291 4-165 (169)
148 cd00877 Ran Ran (Ras-related n 99.8 2.5E-19 5.4E-24 168.4 14.9 156 121-292 1-159 (166)
149 KOG0098 GTPase Rab2, small G p 99.8 8.3E-20 1.8E-24 165.2 11.0 147 324-492 6-168 (216)
150 cd04160 Arfrp1 Arfrp1 subfamil 99.8 1.7E-19 3.7E-24 169.2 13.7 154 122-289 1-166 (167)
151 PRK09554 feoB ferrous iron tra 99.8 3E-19 6.5E-24 202.8 18.3 156 324-492 3-168 (772)
152 cd04112 Rab26 Rab26 subfamily. 99.8 1.9E-19 4.1E-24 173.2 14.2 147 325-492 1-163 (191)
153 PRK12298 obgE GTPase CgtA; Rev 99.8 1.8E-19 3.9E-24 190.2 15.3 154 325-492 160-333 (390)
154 cd04154 Arl2 Arl2 subfamily. 99.8 2.5E-19 5.4E-24 169.5 14.8 152 120-289 14-172 (173)
155 KOG0093 GTPase Rab3, small G p 99.8 3.4E-19 7.4E-24 154.6 14.1 162 119-296 20-187 (193)
156 cd01867 Rab8_Rab10_Rab13_like 99.8 2.3E-19 5.1E-24 168.6 14.4 146 324-491 3-164 (167)
157 cd04144 Ras2 Ras2 subfamily. 99.8 2E-19 4.4E-24 172.9 14.2 144 326-492 1-163 (190)
158 cd04149 Arf6 Arf6 subfamily. 99.8 3.4E-19 7.3E-24 167.8 15.4 144 324-489 9-167 (168)
159 PLN03118 Rab family protein; P 99.8 1.1E-19 2.4E-24 177.7 12.5 148 323-493 13-178 (211)
160 cd01879 FeoB Ferrous iron tran 99.8 3.8E-19 8.3E-24 165.0 15.3 153 125-290 1-155 (158)
161 KOG0394 Ras-related GTPase [Ge 99.8 4E-20 8.7E-25 167.0 8.3 151 323-493 8-179 (210)
162 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.8 2.1E-19 4.5E-24 169.9 13.7 145 325-492 3-164 (172)
163 cd04146 RERG_RasL11_like RERG/ 99.8 2.3E-19 4.9E-24 168.2 13.8 156 122-291 1-163 (165)
164 cd01868 Rab11_like Rab11-like. 99.8 2.3E-19 5.1E-24 168.0 13.9 144 325-490 4-163 (165)
165 cd04123 Rab21 Rab21 subfamily. 99.8 8.3E-19 1.8E-23 163.2 17.5 155 122-290 2-160 (162)
166 KOG0080 GTPase Rab18, small G 99.8 1.1E-19 2.4E-24 159.9 10.8 156 120-291 11-173 (209)
167 cd04122 Rab14 Rab14 subfamily. 99.8 2.8E-19 6.1E-24 167.9 14.2 144 325-491 3-163 (166)
168 PRK11058 GTPase HflX; Provisio 99.8 2.1E-19 4.6E-24 191.8 15.0 149 325-492 198-362 (426)
169 PLN00223 ADP-ribosylation fact 99.8 5.3E-19 1.2E-23 168.5 16.0 152 120-292 17-178 (181)
170 cd04109 Rab28 Rab28 subfamily. 99.8 2.8E-19 6.1E-24 175.3 14.5 147 325-493 1-167 (215)
171 cd01889 SelB_euk SelB subfamil 99.8 3.4E-19 7.3E-24 171.6 14.8 153 325-491 1-185 (192)
172 cd04128 Spg1 Spg1p. Spg1p (se 99.8 7.3E-19 1.6E-23 167.7 16.9 157 122-292 2-166 (182)
173 cd01874 Cdc42 Cdc42 subfamily. 99.8 2.2E-19 4.8E-24 170.2 13.2 154 325-490 2-173 (175)
174 TIGR02528 EutP ethanolamine ut 99.8 3.9E-19 8.5E-24 162.3 14.4 140 122-288 2-141 (142)
175 cd04127 Rab27A Rab27a subfamil 99.8 2.6E-19 5.7E-24 170.3 13.7 146 324-491 4-176 (180)
176 cd01863 Rab18 Rab18 subfamily. 99.8 7E-19 1.5E-23 164.0 16.3 154 122-290 2-160 (161)
177 cd04130 Wrch_1 Wrch-1 subfamil 99.8 5.7E-19 1.2E-23 167.0 15.7 153 122-288 2-170 (173)
178 cd04118 Rab24 Rab24 subfamily. 99.8 1E-18 2.2E-23 168.4 17.5 159 122-293 2-167 (193)
179 cd04157 Arl6 Arl6 subfamily. 99.8 4.6E-19 9.9E-24 165.3 14.7 149 122-289 1-161 (162)
180 cd04116 Rab9 Rab9 subfamily. 99.8 1.2E-18 2.6E-23 164.1 17.6 157 120-290 5-169 (170)
181 cd04158 ARD1 ARD1 subfamily. 99.8 3.2E-19 7E-24 168.1 13.7 153 122-292 1-161 (169)
182 PF00009 GTP_EFTU: Elongation 99.8 3E-19 6.5E-24 171.4 13.7 159 120-292 3-187 (188)
183 cd04135 Tc10 TC10 subfamily. 99.8 4.7E-19 1E-23 167.5 14.8 155 122-290 2-172 (174)
184 cd00881 GTP_translation_factor 99.8 6.6E-19 1.4E-23 168.4 16.0 157 122-292 1-187 (189)
185 KOG0394 Ras-related GTPase [Ge 99.8 2.6E-19 5.7E-24 161.8 12.2 163 117-292 6-178 (210)
186 cd00154 Rab Rab family. Rab G 99.8 9.5E-19 2.1E-23 161.6 16.5 154 121-288 1-158 (159)
187 cd04114 Rab30 Rab30 subfamily. 99.8 1.6E-18 3.4E-23 163.0 18.1 157 120-290 7-167 (169)
188 KOG0091 GTPase Rab39, small G 99.8 2.1E-19 4.5E-24 158.7 11.2 161 121-297 9-178 (213)
189 cd04115 Rab33B_Rab33A Rab33B/R 99.8 1.4E-18 3E-23 163.9 17.7 158 120-291 2-168 (170)
190 cd04150 Arf1_5_like Arf1-Arf5- 99.8 9.6E-19 2.1E-23 163.2 16.4 149 122-289 2-158 (159)
191 cd04108 Rab36_Rab34 Rab34/Rab3 99.8 1.4E-18 3E-23 164.0 17.6 155 122-292 2-165 (170)
192 PLN03071 GTP-binding nuclear p 99.8 4.9E-19 1.1E-23 174.0 15.1 158 120-293 13-173 (219)
193 cd01889 SelB_euk SelB subfamil 99.8 5.9E-19 1.3E-23 170.0 15.2 158 122-293 2-187 (192)
194 cd04177 RSR1 RSR1 subgroup. R 99.8 1.1E-18 2.3E-23 164.3 16.5 157 121-291 2-163 (168)
195 cd04154 Arl2 Arl2 subfamily. 99.8 7.1E-19 1.5E-23 166.4 15.4 145 323-489 13-172 (173)
196 cd01861 Rab6 Rab6 subfamily. 99.8 4.2E-19 9.2E-24 165.4 13.5 143 326-490 2-160 (161)
197 cd01865 Rab3 Rab3 subfamily. 99.8 5.4E-19 1.2E-23 165.8 14.2 145 325-491 2-162 (165)
198 PRK04213 GTP-binding protein; 99.8 1.6E-18 3.6E-23 168.0 18.1 160 120-292 9-192 (201)
199 cd04151 Arl1 Arl1 subfamily. 99.8 6.4E-19 1.4E-23 164.0 14.5 150 122-289 1-157 (158)
200 cd04119 RJL RJL (RabJ-Like) su 99.8 5.6E-19 1.2E-23 165.4 14.2 145 325-491 1-166 (168)
201 cd04107 Rab32_Rab38 Rab38/Rab3 99.8 7E-19 1.5E-23 170.7 15.3 147 325-492 1-168 (201)
202 KOG1423 Ras-like GTPase ERA [C 99.8 2.9E-19 6.3E-24 173.8 12.4 174 319-492 67-271 (379)
203 cd01893 Miro1 Miro1 subfamily. 99.8 8.5E-19 1.8E-23 164.7 15.4 156 122-291 2-163 (166)
204 PRK12297 obgE GTPase CgtA; Rev 99.8 9.4E-19 2E-23 185.7 17.4 151 325-494 159-329 (424)
205 cd00157 Rho Rho (Ras homology) 99.8 5.5E-19 1.2E-23 166.3 14.0 154 122-289 2-170 (171)
206 cd01881 Obg_like The Obg-like 99.8 3.5E-19 7.6E-24 168.3 12.6 159 125-290 1-175 (176)
207 cd04160 Arfrp1 Arfrp1 subfamil 99.8 5.7E-19 1.2E-23 165.7 13.7 148 326-489 1-166 (167)
208 cd04151 Arl1 Arl1 subfamily. 99.8 8.2E-19 1.8E-23 163.3 14.6 142 326-489 1-157 (158)
209 cd04166 CysN_ATPS CysN_ATPS su 99.8 5E-19 1.1E-23 172.6 13.6 150 122-284 1-186 (208)
210 cd04106 Rab23_lke Rab23-like s 99.8 6.3E-19 1.4E-23 164.4 13.6 143 325-489 1-160 (162)
211 PLN03108 Rab family protein; P 99.8 2.5E-18 5.5E-23 167.9 18.4 160 120-293 6-169 (210)
212 PTZ00133 ADP-ribosylation fact 99.8 9.4E-19 2E-23 167.0 14.9 154 120-294 17-180 (182)
213 cd04176 Rap2 Rap2 subgroup. T 99.8 5.2E-19 1.1E-23 165.3 12.9 143 325-490 2-161 (163)
214 cd00876 Ras Ras family. The R 99.8 1.6E-18 3.5E-23 160.9 16.1 154 122-290 1-159 (160)
215 cd04117 Rab15 Rab15 subfamily. 99.8 8.3E-19 1.8E-23 163.9 14.0 144 325-490 1-160 (161)
216 cd04150 Arf1_5_like Arf1-Arf5- 99.8 1.5E-18 3.2E-23 161.9 15.7 143 325-489 1-158 (159)
217 cd04140 ARHI_like ARHI subfami 99.8 8E-19 1.7E-23 164.6 13.8 142 325-489 2-162 (165)
218 cd01866 Rab2 Rab2 subfamily. 99.8 9.8E-19 2.1E-23 164.6 14.4 145 325-491 5-165 (168)
219 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.8 8.2E-19 1.8E-23 167.2 13.8 155 324-490 5-178 (182)
220 cd04133 Rop_like Rop subfamily 99.8 7.7E-19 1.7E-23 166.4 13.4 153 325-491 2-172 (176)
221 KOG1191 Mitochondrial GTPase [ 99.8 5.7E-19 1.2E-23 182.3 13.4 171 120-293 268-451 (531)
222 smart00177 ARF ARF-like small 99.8 1.4E-18 3E-23 164.8 15.1 151 120-291 13-173 (175)
223 cd04124 RabL2 RabL2 subfamily. 99.8 1.5E-18 3.3E-23 162.2 15.1 144 325-493 1-159 (161)
224 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.8 1.5E-18 3.3E-23 165.8 15.3 157 121-293 4-171 (183)
225 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 2E-18 4.3E-23 163.5 15.9 151 120-289 15-173 (174)
226 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.8 2E-18 4.3E-23 164.9 16.0 150 324-492 3-170 (183)
227 PTZ00369 Ras-like protein; Pro 99.8 1.3E-18 2.8E-23 167.1 14.6 146 324-492 5-167 (189)
228 cd01878 HflX HflX subfamily. 99.8 1E-18 2.3E-23 169.9 14.0 148 324-490 41-203 (204)
229 cd04147 Ras_dva Ras-dva subfam 99.8 2.3E-18 5.1E-23 166.6 16.3 156 122-292 1-163 (198)
230 PF00009 GTP_EFTU: Elongation 99.8 1.5E-18 3.2E-23 166.6 14.7 152 325-491 4-186 (188)
231 cd04126 Rab20 Rab20 subfamily. 99.8 1.2E-18 2.7E-23 170.4 14.3 153 325-492 1-190 (220)
232 smart00178 SAR Sar1p-like memb 99.8 1E-18 2.2E-23 167.1 13.5 153 120-290 17-183 (184)
233 cd01864 Rab19 Rab19 subfamily. 99.8 1.4E-18 3E-23 162.9 14.2 145 324-489 3-163 (165)
234 KOG1423 Ras-like GTPase ERA [C 99.8 1.3E-18 2.9E-23 169.2 14.2 170 120-292 72-271 (379)
235 cd04113 Rab4 Rab4 subfamily. 99.8 1E-18 2.3E-23 162.9 13.1 144 325-490 1-160 (161)
236 PRK15467 ethanolamine utilizat 99.8 2.2E-18 4.7E-23 160.5 15.2 145 122-293 3-148 (158)
237 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.8 1.5E-18 3.3E-23 170.8 14.9 157 324-492 13-188 (232)
238 PTZ00133 ADP-ribosylation fact 99.8 3.2E-18 6.9E-23 163.3 16.7 148 324-493 17-179 (182)
239 cd04157 Arl6 Arl6 subfamily. 99.8 1.4E-18 3E-23 162.1 13.9 142 326-489 1-161 (162)
240 cd04131 Rnd Rnd subfamily. Th 99.8 1E-18 2.2E-23 166.0 13.2 154 325-490 2-174 (178)
241 smart00175 RAB Rab subfamily o 99.8 1.6E-18 3.6E-23 161.8 14.3 144 325-491 1-161 (164)
242 cd04111 Rab39 Rab39 subfamily. 99.8 8.2E-19 1.8E-23 171.4 12.7 150 325-496 3-170 (211)
243 cd04125 RabA_like RabA-like su 99.8 1E-18 2.3E-23 167.6 13.2 146 325-492 1-162 (188)
244 cd04156 ARLTS1 ARLTS1 subfamil 99.8 2.3E-18 5.1E-23 160.3 15.2 150 122-289 1-159 (160)
245 cd01871 Rac1_like Rac1-like su 99.8 1.1E-18 2.4E-23 165.3 13.2 153 325-489 2-172 (174)
246 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 2.4E-18 5.1E-23 163.0 15.4 144 324-489 15-173 (174)
247 cd01875 RhoG RhoG subfamily. 99.8 1.5E-18 3.3E-23 166.9 14.3 156 324-491 3-176 (191)
248 cd01881 Obg_like The Obg-like 99.8 1.1E-18 2.4E-23 165.0 13.1 146 329-489 1-174 (176)
249 PRK04213 GTP-binding protein; 99.8 2.1E-18 4.6E-23 167.3 15.2 157 324-492 9-192 (201)
250 PLN03110 Rab GTPase; Provision 99.8 1.7E-18 3.6E-23 169.9 14.4 149 323-493 11-175 (216)
251 cd01890 LepA LepA subfamily. 99.8 2.8E-18 6.1E-23 162.9 15.6 145 326-490 2-175 (179)
252 cd01860 Rab5_related Rab5-rela 99.8 1.1E-18 2.4E-23 162.9 12.6 144 325-491 2-162 (163)
253 cd04101 RabL4 RabL4 (Rab-like4 99.8 2.3E-18 4.9E-23 161.1 14.5 146 325-491 1-163 (164)
254 cd00877 Ran Ran (Ras-related n 99.8 1.4E-18 3E-23 163.4 13.1 144 325-492 1-159 (166)
255 cd04132 Rho4_like Rho4-like su 99.8 1.7E-18 3.7E-23 165.8 13.9 150 325-493 1-168 (187)
256 cd04116 Rab9 Rab9 subfamily. 99.8 1.9E-18 4.2E-23 162.7 14.0 145 324-490 5-169 (170)
257 cd04148 RGK RGK subfamily. Th 99.8 3E-18 6.4E-23 168.7 15.8 156 121-292 1-163 (221)
258 KOG0087 GTPase Rab11/YPT3, sma 99.8 7E-19 1.5E-23 163.0 10.5 148 322-491 12-175 (222)
259 cd04103 Centaurin_gamma Centau 99.8 4.4E-18 9.6E-23 158.5 16.0 148 122-289 2-156 (158)
260 cd04146 RERG_RasL11_like RERG/ 99.8 1.2E-18 2.6E-23 163.4 12.3 144 326-491 1-163 (165)
261 cd00878 Arf_Arl Arf (ADP-ribos 99.8 2.6E-18 5.5E-23 159.8 14.4 142 326-489 1-157 (158)
262 cd04110 Rab35 Rab35 subfamily. 99.8 2.4E-18 5.2E-23 166.7 14.7 147 324-492 6-167 (199)
263 smart00177 ARF ARF-like small 99.8 4.6E-18 1E-22 161.2 16.3 145 324-490 13-172 (175)
264 cd01884 EF_Tu EF-Tu subfamily. 99.8 4.3E-18 9.4E-23 163.6 16.2 144 325-481 3-172 (195)
265 cd04115 Rab33B_Rab33A Rab33B/R 99.8 2.3E-18 4.9E-23 162.4 14.0 146 325-491 3-168 (170)
266 PLN00223 ADP-ribosylation fact 99.8 4.8E-18 1E-22 162.0 16.3 147 324-492 17-178 (181)
267 cd04137 RheB Rheb (Ras Homolog 99.8 6.1E-18 1.3E-22 160.9 16.9 158 121-293 2-164 (180)
268 cd01870 RhoA_like RhoA-like su 99.8 2.8E-18 6.1E-23 162.3 14.3 155 121-289 2-172 (175)
269 cd01863 Rab18 Rab18 subfamily. 99.8 3.4E-18 7.3E-23 159.4 14.6 142 325-490 1-160 (161)
270 cd04163 Era Era subfamily. Er 99.8 7.6E-18 1.6E-22 156.9 16.9 154 324-489 3-166 (168)
271 cd04162 Arl9_Arfrp2_like Arl9/ 99.8 1.4E-18 3.1E-23 162.9 12.0 149 123-289 2-163 (164)
272 cd04156 ARLTS1 ARLTS1 subfamil 99.8 3.1E-18 6.6E-23 159.5 14.0 142 326-489 1-159 (160)
273 cd04158 ARD1 ARD1 subfamily. 99.8 6E-18 1.3E-22 159.5 16.2 143 326-491 1-160 (169)
274 cd04177 RSR1 RSR1 subgroup. R 99.8 3.1E-18 6.6E-23 161.2 14.0 145 325-491 2-163 (168)
275 cd04139 RalA_RalB RalA/RalB su 99.8 7.3E-18 1.6E-22 157.3 16.4 144 325-492 1-162 (164)
276 cd00879 Sar1 Sar1 subfamily. 99.8 2.8E-18 6E-23 164.8 14.0 153 120-290 19-189 (190)
277 cd04118 Rab24 Rab24 subfamily. 99.8 3.8E-18 8.3E-23 164.3 14.7 148 325-492 1-166 (193)
278 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 6.5E-18 1.4E-22 158.5 15.9 150 326-491 2-165 (168)
279 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.8 7.7E-18 1.7E-22 164.9 17.0 156 121-290 2-174 (222)
280 TIGR00157 ribosome small subun 99.8 2.8E-18 6E-23 170.9 14.0 152 192-386 25-185 (245)
281 cd04114 Rab30 Rab30 subfamily. 99.8 4E-18 8.7E-23 160.2 14.2 145 324-490 7-167 (169)
282 smart00174 RHO Rho (Ras homolo 99.8 3.5E-18 7.5E-23 161.6 13.8 153 327-491 1-171 (174)
283 smart00176 RAN Ran (Ras-relate 99.8 5E-18 1.1E-22 163.9 15.1 152 126-293 1-155 (200)
284 cd04135 Tc10 TC10 subfamily. 99.8 2.8E-18 6.1E-23 162.2 13.1 154 325-490 1-172 (174)
285 cd04178 Nucleostemin_like Nucl 99.8 2.5E-18 5.5E-23 161.6 12.4 147 205-382 1-172 (172)
286 PLN03071 GTP-binding nuclear p 99.8 3.1E-18 6.6E-23 168.3 13.4 145 323-492 12-172 (219)
287 cd00878 Arf_Arl Arf (ADP-ribos 99.8 5.8E-18 1.3E-22 157.4 14.6 150 122-289 1-157 (158)
288 cd04108 Rab36_Rab34 Rab34/Rab3 99.8 6.6E-18 1.4E-22 159.4 15.1 147 326-492 2-165 (170)
289 cd00881 GTP_translation_factor 99.8 5.2E-18 1.1E-22 162.1 14.6 151 326-490 1-185 (189)
290 KOG0095 GTPase Rab30, small G 99.8 6.9E-18 1.5E-22 146.7 13.7 158 120-293 7-170 (213)
291 cd04130 Wrch_1 Wrch-1 subfamil 99.8 2.3E-18 5E-23 162.9 11.9 153 325-489 1-171 (173)
292 TIGR03597 GTPase_YqeH ribosome 99.8 9.3E-18 2E-22 176.4 17.6 206 192-439 52-281 (360)
293 PRK12289 GTPase RsgA; Reviewed 99.8 3.2E-18 7E-23 177.8 13.8 147 198-386 84-238 (352)
294 TIGR00437 feoB ferrous iron tr 99.8 4.6E-18 1E-22 189.1 15.9 146 331-491 1-154 (591)
295 cd04143 Rhes_like Rhes_like su 99.8 6.4E-18 1.4E-22 168.6 15.2 145 325-491 1-170 (247)
296 PRK09554 feoB ferrous iron tra 99.8 9E-18 2E-22 190.8 18.3 160 121-291 4-167 (772)
297 cd01873 RhoBTB RhoBTB subfamil 99.8 6.6E-18 1.4E-22 162.7 14.5 154 121-289 3-193 (195)
298 TIGR03598 GTPase_YsxC ribosome 99.8 7.8E-18 1.7E-22 160.2 14.9 148 323-481 17-179 (179)
299 cd04128 Spg1 Spg1p. Spg1p (se 99.8 9.4E-18 2E-22 160.1 15.4 150 325-492 1-166 (182)
300 cd04134 Rho3 Rho3 subfamily. 99.8 5.4E-18 1.2E-22 162.8 13.8 155 326-492 2-174 (189)
301 KOG0086 GTPase Rab4, small G p 99.8 8.1E-18 1.7E-22 146.9 13.3 159 119-293 8-172 (214)
302 KOG0095 GTPase Rab30, small G 99.8 3.2E-18 6.9E-23 148.7 10.7 147 323-491 6-168 (213)
303 PF01926 MMR_HSR1: 50S ribosom 99.8 6.6E-18 1.4E-22 148.8 13.0 116 122-243 1-116 (116)
304 cd04161 Arl2l1_Arl13_like Arl2 99.8 1E-17 2.2E-22 157.6 14.9 150 122-289 1-166 (167)
305 cd01884 EF_Tu EF-Tu subfamily. 99.8 1.6E-17 3.4E-22 159.8 16.2 147 121-281 3-172 (195)
306 cd01862 Rab7 Rab7 subfamily. 99.8 1.3E-17 2.9E-22 157.0 15.4 147 325-493 1-168 (172)
307 cd04166 CysN_ATPS CysN_ATPS su 99.8 4.3E-18 9.3E-23 166.0 12.4 144 326-483 1-185 (208)
308 PLN03108 Rab family protein; P 99.8 9.3E-18 2E-22 163.9 14.6 146 324-491 6-167 (210)
309 TIGR00487 IF-2 translation ini 99.8 1.8E-17 3.8E-22 183.4 18.5 152 120-289 87-247 (587)
310 cd04147 Ras_dva Ras-dva subfam 99.8 1.1E-17 2.4E-22 161.9 14.6 146 326-492 1-163 (198)
311 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.8 8.1E-18 1.8E-22 164.8 13.6 155 325-491 2-175 (222)
312 cd01891 TypA_BipA TypA (tyrosi 99.8 2.3E-17 4.9E-22 159.2 16.5 146 325-483 3-173 (194)
313 cd01892 Miro2 Miro2 subfamily. 99.8 7.7E-18 1.7E-22 158.7 12.9 146 324-491 4-165 (169)
314 cd04155 Arl3 Arl3 subfamily. 99.8 2.4E-17 5.3E-22 155.6 16.3 149 120-289 14-172 (173)
315 TIGR00231 small_GTP small GTP- 99.8 4.2E-17 9.1E-22 150.1 17.4 153 121-288 2-160 (161)
316 cd04148 RGK RGK subfamily. Th 99.8 8.4E-18 1.8E-22 165.4 13.4 144 325-492 1-163 (221)
317 cd04137 RheB Rheb (Ras Homolog 99.7 1.2E-17 2.5E-22 159.0 13.8 147 325-494 2-165 (180)
318 KOG0079 GTP-binding protein H- 99.7 2.5E-18 5.4E-23 149.3 8.3 149 325-495 9-172 (198)
319 cd04129 Rho2 Rho2 subfamily. 99.7 1.8E-17 3.8E-22 159.0 15.1 156 122-291 3-172 (187)
320 PF00071 Ras: Ras family; Int 99.7 2E-17 4.4E-22 154.3 15.2 156 122-291 1-160 (162)
321 cd00154 Rab Rab family. Rab G 99.7 7.6E-18 1.6E-22 155.5 12.1 142 325-488 1-158 (159)
322 COG1163 DRG Predicted GTPase [ 99.7 3.3E-18 7.2E-23 168.4 10.0 145 324-491 63-288 (365)
323 cd04123 Rab21 Rab21 subfamily. 99.7 1.5E-17 3.3E-22 154.7 14.0 144 325-490 1-160 (162)
324 TIGR02528 EutP ethanolamine ut 99.7 9.4E-18 2E-22 153.1 12.4 133 326-488 2-141 (142)
325 KOG1489 Predicted GTP-binding 99.7 1.8E-17 3.9E-22 162.5 14.8 166 115-289 191-364 (366)
326 cd00157 Rho Rho (Ras homology) 99.7 3.7E-18 8.1E-23 160.6 9.7 153 325-489 1-170 (171)
327 PRK05306 infB translation init 99.7 2.7E-17 5.9E-22 185.9 18.3 153 119-289 289-449 (787)
328 cd04103 Centaurin_gamma Centau 99.7 1.2E-17 2.5E-22 155.7 12.7 138 325-489 1-156 (158)
329 cd04159 Arl10_like Arl10-like 99.7 1.8E-17 3.8E-22 153.2 13.8 150 123-289 2-158 (159)
330 cd04155 Arl3 Arl3 subfamily. 99.7 2.4E-17 5.3E-22 155.6 14.9 144 324-489 14-172 (173)
331 smart00178 SAR Sar1p-like memb 99.7 2.8E-17 6E-22 157.2 15.5 146 324-489 17-182 (184)
332 TIGR00475 selB selenocysteine- 99.7 2E-17 4.4E-22 183.8 16.7 157 122-292 2-166 (581)
333 PRK00454 engB GTP-binding prot 99.7 4E-17 8.7E-22 157.5 16.7 156 323-491 23-193 (196)
334 cd00879 Sar1 Sar1 subfamily. 99.7 1.8E-17 3.9E-22 159.1 14.2 147 324-490 19-189 (190)
335 cd00876 Ras Ras family. The R 99.7 1.4E-17 3E-22 154.6 13.0 142 326-490 1-159 (160)
336 cd01893 Miro1 Miro1 subfamily. 99.7 3.1E-17 6.7E-22 154.0 15.2 147 325-491 1-163 (166)
337 cd01896 DRG The developmentall 99.7 2E-17 4.3E-22 163.8 14.4 144 326-491 2-225 (233)
338 KOG0080 GTPase Rab18, small G 99.7 3.9E-18 8.4E-23 150.3 8.1 146 324-491 11-173 (209)
339 TIGR01393 lepA GTP-binding pro 99.7 2.6E-17 5.7E-22 183.0 16.9 158 120-293 3-181 (595)
340 COG2262 HflX GTPases [General 99.7 1.4E-17 3E-22 169.9 13.4 151 324-493 192-357 (411)
341 cd01896 DRG The developmentall 99.7 3.9E-17 8.3E-22 161.7 16.1 156 122-291 2-225 (233)
342 cd01873 RhoBTB RhoBTB subfamil 99.7 1.4E-17 3E-22 160.4 12.3 154 325-490 3-194 (195)
343 CHL00189 infB translation init 99.7 3.3E-17 7.1E-22 183.5 16.8 154 119-290 243-408 (742)
344 PRK15467 ethanolamine utilizat 99.7 1.9E-17 4.2E-22 154.1 12.6 137 326-492 3-147 (158)
345 COG0370 FeoB Fe2+ transport sy 99.7 4.6E-17 1E-21 176.0 16.6 159 121-292 4-164 (653)
346 COG1084 Predicted GTPase [Gene 99.7 2.7E-17 5.9E-22 162.9 13.6 152 324-490 168-334 (346)
347 cd04161 Arl2l1_Arl13_like Arl2 99.7 3E-17 6.5E-22 154.4 13.4 144 326-489 1-166 (167)
348 cd01870 RhoA_like RhoA-like su 99.7 3.4E-17 7.3E-22 154.9 13.6 154 325-490 2-173 (175)
349 TIGR00491 aIF-2 translation in 99.7 5.8E-17 1.3E-21 178.9 17.5 161 120-295 4-219 (590)
350 cd04162 Arl9_Arfrp2_like Arl9/ 99.7 3.6E-17 7.8E-22 153.4 13.6 143 326-488 1-162 (164)
351 PRK12317 elongation factor 1-a 99.7 3E-17 6.5E-22 177.4 14.8 151 323-485 5-198 (425)
352 KOG0097 GTPase Rab14, small G 99.7 5.4E-17 1.2E-21 139.8 13.2 159 119-293 10-174 (215)
353 PRK13796 GTPase YqeH; Provisio 99.7 5.5E-17 1.2E-21 170.8 16.3 152 195-385 60-223 (365)
354 KOG0086 GTPase Rab4, small G p 99.7 2.5E-17 5.4E-22 143.8 11.1 147 323-491 8-170 (214)
355 cd00880 Era_like Era (E. coli 99.7 1E-16 2.2E-21 147.7 15.9 159 125-290 1-162 (163)
356 cd04159 Arl10_like Arl10-like 99.7 7.8E-17 1.7E-21 148.9 14.9 142 327-489 2-158 (159)
357 PRK12288 GTPase RsgA; Reviewed 99.7 5.7E-17 1.2E-21 168.5 15.4 146 200-386 117-271 (347)
358 PRK12317 elongation factor 1-a 99.7 3.1E-17 6.8E-22 177.2 14.0 153 120-285 6-198 (425)
359 TIGR00231 small_GTP small GTP- 99.7 1.1E-16 2.5E-21 147.2 15.9 140 325-487 2-159 (161)
360 KOG0093 GTPase Rab3, small G p 99.7 2.2E-17 4.7E-22 143.4 10.0 148 324-493 21-184 (193)
361 KOG1489 Predicted GTP-binding 99.7 3.4E-17 7.5E-22 160.5 12.5 147 325-489 197-364 (366)
362 TIGR00437 feoB ferrous iron tr 99.7 8.6E-17 1.9E-21 178.9 17.2 151 127-290 1-153 (591)
363 PRK09866 hypothetical protein; 99.7 8E-17 1.7E-21 173.0 15.9 115 170-289 230-350 (741)
364 cd01876 YihA_EngB The YihA (En 99.7 3.2E-16 6.9E-21 146.4 18.2 161 123-290 2-169 (170)
365 COG1163 DRG Predicted GTPase [ 99.7 4.3E-17 9.2E-22 160.6 12.5 161 118-292 61-289 (365)
366 COG0536 Obg Predicted GTPase [ 99.7 1.2E-16 2.5E-21 158.9 15.4 173 115-294 154-335 (369)
367 TIGR00475 selB selenocysteine- 99.7 8.8E-17 1.9E-21 178.7 16.2 153 326-493 2-167 (581)
368 cd00880 Era_like Era (E. coli 99.7 1.5E-16 3.3E-21 146.5 15.0 151 329-490 1-162 (163)
369 cd01888 eIF2_gamma eIF2-gamma 99.7 9.7E-17 2.1E-21 155.8 14.0 158 122-292 2-199 (203)
370 smart00176 RAN Ran (Ras-relate 99.7 5.5E-17 1.2E-21 156.7 12.0 139 330-492 1-154 (200)
371 cd01883 EF1_alpha Eukaryotic e 99.7 8.4E-17 1.8E-21 158.1 13.5 146 326-481 1-194 (219)
372 TIGR00487 IF-2 translation ini 99.7 1.5E-16 3.2E-21 176.1 16.8 150 323-489 86-247 (587)
373 COG1161 Predicted GTPases [Gen 99.7 1.3E-16 2.7E-21 164.9 15.0 168 192-386 23-191 (322)
374 PRK10512 selenocysteinyl-tRNA- 99.7 1.8E-16 3.9E-21 176.7 17.2 156 122-291 2-165 (614)
375 CHL00071 tufA elongation facto 99.7 1.5E-16 3.3E-21 170.5 16.1 145 323-480 11-181 (409)
376 PRK05306 infB translation init 99.7 1.6E-16 3.4E-21 179.7 16.7 150 322-489 288-449 (787)
377 PF00071 Ras: Ras family; Int 99.7 1.3E-16 2.8E-21 148.8 13.4 145 326-492 1-161 (162)
378 PRK05433 GTP-binding protein L 99.7 2E-16 4.3E-21 176.2 17.2 159 119-293 6-185 (600)
379 COG0536 Obg Predicted GTPase [ 99.7 1.6E-16 3.5E-21 158.0 14.1 154 326-494 161-335 (369)
380 PRK10218 GTP-binding protein; 99.7 3.7E-16 7.9E-21 173.1 18.1 160 120-293 5-196 (607)
381 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 4.1E-16 8.8E-21 150.7 16.2 168 122-293 2-185 (196)
382 TIGR01394 TypA_BipA GTP-bindin 99.7 3E-16 6.4E-21 174.1 17.1 158 121-293 2-192 (594)
383 PF01926 MMR_HSR1: 50S ribosom 99.7 1.8E-16 3.8E-21 139.7 12.2 107 326-433 1-116 (116)
384 PF10662 PduV-EutP: Ethanolami 99.7 2.9E-16 6.2E-21 140.5 13.5 141 121-288 2-142 (143)
385 COG0218 Predicted GTPase [Gene 99.7 6.6E-16 1.4E-20 144.2 16.3 158 324-491 24-196 (200)
386 KOG0083 GTPase Rab26/Rab37, sm 99.7 8.7E-18 1.9E-22 143.3 2.6 149 329-498 2-166 (192)
387 cd01888 eIF2_gamma eIF2-gamma 99.7 2.6E-16 5.6E-21 152.9 13.2 148 325-490 1-197 (203)
388 PRK12736 elongation factor Tu; 99.7 3.5E-16 7.5E-21 166.9 15.4 144 322-478 10-179 (394)
389 PRK00098 GTPase RsgA; Reviewed 99.7 2.3E-16 5E-21 161.8 13.3 145 200-385 77-229 (298)
390 cd04168 TetM_like Tet(M)-like 99.7 6.1E-16 1.3E-20 153.4 15.7 115 122-248 1-130 (237)
391 KOG0081 GTPase Rab27, small G 99.7 1.8E-16 4E-21 139.4 10.1 163 121-299 10-188 (219)
392 KOG0088 GTPase Rab21, small G 99.7 5.2E-17 1.1E-21 142.7 6.1 158 120-293 13-176 (218)
393 PF00025 Arf: ADP-ribosylation 99.7 1.1E-15 2.4E-20 144.9 15.4 147 323-490 13-174 (175)
394 CHL00071 tufA elongation facto 99.7 6.3E-16 1.4E-20 165.8 15.4 147 120-280 12-181 (409)
395 CHL00189 infB translation init 99.7 4.7E-16 1E-20 174.3 15.0 152 322-491 242-409 (742)
396 PRK04004 translation initiatio 99.7 1E-15 2.2E-20 169.8 17.3 161 120-295 6-221 (586)
397 PTZ00132 GTP-binding nuclear p 99.7 2.2E-15 4.7E-20 147.8 17.8 157 120-292 9-168 (215)
398 KOG0083 GTPase Rab26/Rab37, sm 99.7 7.9E-17 1.7E-21 137.5 6.3 156 125-293 2-161 (192)
399 cd04168 TetM_like Tet(M)-like 99.7 1.3E-15 2.8E-20 151.1 15.9 154 326-490 1-233 (237)
400 cd04129 Rho2 Rho2 subfamily. 99.7 4.6E-16 1E-20 149.1 12.4 154 325-491 2-172 (187)
401 KOG0395 Ras-related GTPase [Ge 99.7 4.7E-16 1E-20 149.1 12.3 147 324-493 3-166 (196)
402 TIGR01393 lepA GTP-binding pro 99.7 7.8E-16 1.7E-20 171.3 15.9 147 325-491 4-179 (595)
403 cd01883 EF1_alpha Eukaryotic e 99.7 4.7E-16 1E-20 152.8 12.6 149 122-281 1-194 (219)
404 KOG0462 Elongation factor-type 99.7 4.6E-16 1E-20 162.1 12.7 168 113-294 53-237 (650)
405 PF00025 Arf: ADP-ribosylation 99.7 3.5E-16 7.7E-21 148.2 11.0 153 120-290 14-174 (175)
406 KOG1707 Predicted Ras related/ 99.7 3.2E-15 6.9E-20 157.4 18.7 153 121-288 10-171 (625)
407 cd00882 Ras_like_GTPase Ras-li 99.7 1.4E-15 3E-20 138.4 14.1 151 125-288 1-156 (157)
408 cd01854 YjeQ_engC YjeQ/EngC. 99.7 7.9E-16 1.7E-20 157.0 13.7 143 200-385 75-226 (287)
409 cd04165 GTPBP1_like GTPBP1-lik 99.7 2.2E-15 4.8E-20 148.0 16.2 153 122-288 1-219 (224)
410 cd01886 EF-G Elongation factor 99.7 8.7E-16 1.9E-20 155.0 13.7 142 122-277 1-160 (270)
411 PRK12735 elongation factor Tu; 99.7 1.2E-15 2.5E-20 163.0 15.4 143 323-479 11-180 (396)
412 PRK12736 elongation factor Tu; 99.7 1.3E-15 2.9E-20 162.4 15.6 159 120-292 12-201 (394)
413 TIGR00491 aIF-2 translation in 99.7 1.8E-15 4E-20 167.1 17.0 156 324-491 4-215 (590)
414 PRK10512 selenocysteinyl-tRNA- 99.7 1.3E-15 2.9E-20 169.8 15.7 149 326-490 2-164 (614)
415 cd01899 Ygr210 Ygr210 subfamil 99.6 2.4E-15 5.3E-20 154.5 16.2 161 123-293 1-270 (318)
416 KOG0073 GTP-binding ADP-ribosy 99.6 2.8E-15 6.1E-20 133.2 13.9 157 120-293 16-179 (185)
417 PLN03127 Elongation factor Tu; 99.6 3.5E-15 7.6E-20 160.7 17.7 143 323-479 60-232 (447)
418 PRK05506 bifunctional sulfate 99.6 1.4E-15 3E-20 171.9 15.2 152 120-282 24-211 (632)
419 cd01852 AIG1 AIG1 (avrRpt2-ind 99.6 1.9E-15 4E-20 146.1 13.7 164 325-493 1-185 (196)
420 TIGR00485 EF-Tu translation el 99.6 2.6E-15 5.7E-20 160.4 15.8 143 323-478 11-179 (394)
421 cd01899 Ygr210 Ygr210 subfamil 99.6 2.5E-15 5.3E-20 154.5 14.9 86 327-416 1-110 (318)
422 TIGR02034 CysN sulfate adenyly 99.6 1.8E-15 4E-20 161.9 14.5 151 122-283 2-188 (406)
423 TIGR00483 EF-1_alpha translati 99.6 2.1E-15 4.5E-20 163.0 14.8 151 323-485 6-200 (426)
424 PRK00049 elongation factor Tu; 99.6 2.9E-15 6.2E-20 159.9 15.5 144 323-479 11-180 (396)
425 KOG0091 GTPase Rab39, small G 99.6 4.1E-16 8.9E-21 138.0 7.2 147 324-492 8-173 (213)
426 KOG1490 GTP-binding protein CR 99.6 1.9E-15 4.1E-20 156.0 13.0 156 325-491 169-340 (620)
427 PRK12735 elongation factor Tu; 99.6 3.1E-15 6.7E-20 159.7 15.2 158 120-291 12-202 (396)
428 TIGR01394 TypA_BipA GTP-bindin 99.6 2.8E-15 6.1E-20 166.3 15.4 152 326-490 3-189 (594)
429 PRK10218 GTP-binding protein; 99.6 5E-15 1.1E-19 164.1 17.0 142 325-479 6-172 (607)
430 PLN03126 Elongation factor Tu; 99.6 4.6E-15 9.9E-20 160.6 16.3 145 323-480 80-250 (478)
431 TIGR00483 EF-1_alpha translati 99.6 3.4E-15 7.3E-20 161.4 15.1 152 120-284 7-199 (426)
432 KOG0395 Ras-related GTPase [Ge 99.6 4.6E-15 9.9E-20 142.3 14.3 159 120-293 3-166 (196)
433 PRK05124 cysN sulfate adenylyl 99.6 2.9E-15 6.3E-20 162.8 14.4 154 120-284 27-217 (474)
434 cd01876 YihA_EngB The YihA (En 99.6 9.1E-15 2E-19 136.4 15.8 155 326-490 1-169 (170)
435 cd04102 RabL3 RabL3 (Rab-like3 99.6 9E-15 2E-19 141.3 16.0 143 122-278 2-176 (202)
436 cd01886 EF-G Elongation factor 99.6 3.3E-15 7.2E-20 150.8 13.4 133 326-477 1-160 (270)
437 COG0532 InfB Translation initi 99.6 7.2E-15 1.6E-19 154.9 16.2 154 120-291 5-169 (509)
438 TIGR03680 eif2g_arch translati 99.6 3.3E-15 7.1E-20 160.1 13.7 159 120-292 4-196 (406)
439 KOG0097 GTPase Rab14, small G 99.6 2.4E-15 5.2E-20 129.7 10.1 145 324-491 11-172 (215)
440 PLN03127 Elongation factor Tu; 99.6 7.7E-15 1.7E-19 158.1 16.5 158 120-292 61-252 (447)
441 TIGR00485 EF-Tu translation el 99.6 4.9E-15 1.1E-19 158.3 14.7 145 120-278 12-179 (394)
442 PRK00049 elongation factor Tu; 99.6 7.3E-15 1.6E-19 156.8 15.4 158 120-291 12-202 (396)
443 cd04167 Snu114p Snu114p subfam 99.6 5.9E-15 1.3E-19 144.5 13.4 114 122-247 2-136 (213)
444 PRK05124 cysN sulfate adenylyl 99.6 4.2E-15 9.1E-20 161.6 13.6 149 322-483 25-216 (474)
445 PTZ00141 elongation factor 1- 99.6 6.4E-15 1.4E-19 159.0 14.7 150 323-482 6-203 (446)
446 PRK09602 translation-associate 99.6 1.2E-14 2.7E-19 153.8 16.5 162 121-293 2-272 (396)
447 TIGR02034 CysN sulfate adenyly 99.6 5.2E-15 1.1E-19 158.4 13.6 145 325-483 1-188 (406)
448 PRK09602 translation-associate 99.6 9E-15 1.9E-19 154.8 15.1 88 325-416 2-113 (396)
449 PRK12739 elongation factor G; 99.6 8.6E-15 1.9E-19 166.9 16.1 116 119-248 7-139 (691)
450 KOG0073 GTP-binding ADP-ribosy 99.6 2.9E-14 6.4E-19 126.8 15.7 149 324-493 16-179 (185)
451 KOG0088 GTPase Rab21, small G 99.6 2.8E-16 6.1E-21 138.1 2.7 146 323-490 12-173 (218)
452 PRK05433 GTP-binding protein L 99.6 1.2E-14 2.5E-19 162.0 16.2 148 324-491 7-183 (600)
453 KOG1424 Predicted GTP-binding 99.6 6.4E-15 1.4E-19 153.1 13.0 187 192-385 163-372 (562)
454 cd04165 GTPBP1_like GTPBP1-lik 99.6 1.3E-14 2.7E-19 142.7 14.5 153 326-488 1-219 (224)
455 PRK05506 bifunctional sulfate 99.6 5.9E-15 1.3E-19 166.8 13.6 146 324-483 24-212 (632)
456 PRK00007 elongation factor G; 99.6 1.4E-14 3.1E-19 164.9 16.4 116 119-248 9-141 (693)
457 PTZ00132 GTP-binding nuclear p 99.6 2.9E-14 6.4E-19 139.8 16.5 145 324-492 9-168 (215)
458 cd01885 EF2 EF2 (for archaea a 99.6 1.7E-14 3.8E-19 141.1 14.5 115 121-247 1-138 (222)
459 PRK04004 translation initiatio 99.6 2.4E-14 5.3E-19 158.9 17.4 155 324-490 6-216 (586)
460 KOG2423 Nucleolar GTPase [Gene 99.6 4.4E-15 9.5E-20 148.8 10.2 161 192-385 202-365 (572)
461 cd04169 RF3 RF3 subfamily. Pe 99.6 2.7E-14 5.9E-19 144.0 16.1 105 325-439 3-138 (267)
462 TIGR03680 eif2g_arch translati 99.6 8.7E-15 1.9E-19 156.8 12.9 151 324-490 4-194 (406)
463 cd04170 EF-G_bact Elongation f 99.6 7.9E-15 1.7E-19 148.8 11.8 150 122-287 1-168 (268)
464 PRK04000 translation initiatio 99.6 1.7E-14 3.7E-19 154.4 14.9 160 120-292 9-201 (411)
465 PTZ00258 GTP-binding protein; 99.6 1.1E-14 2.5E-19 152.2 13.0 90 323-416 20-126 (390)
466 KOG2484 GTPase [General functi 99.6 1E-14 2.2E-19 147.4 12.1 174 192-385 135-310 (435)
467 PLN03126 Elongation factor Tu; 99.6 2.6E-14 5.5E-19 154.8 16.1 146 120-279 81-249 (478)
468 KOG1145 Mitochondrial translat 99.6 3.4E-14 7.4E-19 148.2 16.2 154 118-289 151-313 (683)
469 KOG0081 GTPase Rab27, small G 99.6 9.5E-16 2.1E-20 134.9 4.0 145 325-491 10-180 (219)
470 PRK12739 elongation factor G; 99.6 1.6E-14 3.5E-19 164.6 15.1 106 324-439 8-140 (691)
471 KOG0462 Elongation factor-type 99.6 1.2E-14 2.7E-19 151.6 12.7 148 324-491 60-234 (650)
472 cd01885 EF2 EF2 (for archaea a 99.6 1.7E-14 3.8E-19 141.1 13.1 145 326-480 2-200 (222)
473 cd04104 p47_IIGP_like p47 (47- 99.6 2.2E-14 4.7E-19 138.7 13.7 164 121-294 2-186 (197)
474 TIGR00484 EF-G translation elo 99.6 2.6E-14 5.6E-19 163.1 16.5 106 324-439 10-142 (689)
475 cd04167 Snu114p Snu114p subfam 99.6 2.7E-14 5.9E-19 139.8 14.1 146 326-481 2-192 (213)
476 cd04169 RF3 RF3 subfamily. Pe 99.6 6.1E-14 1.3E-18 141.4 16.8 118 120-249 2-138 (267)
477 PRK00007 elongation factor G; 99.6 2.8E-14 6.1E-19 162.6 16.1 106 324-439 10-142 (693)
478 cd00882 Ras_like_GTPase Ras-li 99.6 1.5E-14 3.3E-19 131.5 11.3 139 329-488 1-156 (157)
479 TIGR00484 EF-G translation elo 99.6 3.4E-14 7.4E-19 162.1 16.5 144 118-278 8-172 (689)
480 cd04170 EF-G_bact Elongation f 99.6 4.4E-14 9.5E-19 143.3 15.0 104 326-439 1-131 (268)
481 COG0532 InfB Translation initi 99.6 3.6E-14 7.8E-19 149.7 14.6 155 324-494 5-172 (509)
482 COG1100 GTPase SAR1 and relate 99.6 1.1E-13 2.3E-18 136.0 17.1 161 121-293 6-186 (219)
483 COG3596 Predicted GTPase [Gene 99.6 3.5E-14 7.6E-19 137.8 13.0 168 120-293 39-223 (296)
484 PRK00741 prfC peptide chain re 99.6 5.5E-14 1.2E-18 154.2 16.2 117 120-248 10-145 (526)
485 PRK04000 translation initiatio 99.6 2.5E-14 5.3E-19 153.2 12.9 153 323-491 8-200 (411)
486 cd04102 RabL3 RabL3 (Rab-like3 99.6 7.8E-14 1.7E-18 134.7 15.1 158 325-513 1-198 (202)
487 PLN00023 GTP-binding protein; 99.5 7.3E-14 1.6E-18 141.5 15.3 135 119-266 20-189 (334)
488 PRK09601 GTP-binding protein Y 99.5 3.7E-14 8.1E-19 146.6 13.0 89 324-416 2-107 (364)
489 cd04104 p47_IIGP_like p47 (47- 99.5 8.8E-14 1.9E-18 134.4 14.3 163 324-495 1-187 (197)
490 KOG0075 GTP-binding ADP-ribosy 99.5 5E-14 1.1E-18 122.7 11.1 151 121-291 21-181 (186)
491 PLN00043 elongation factor 1-a 99.5 6.7E-14 1.5E-18 151.0 14.4 150 323-482 6-203 (447)
492 COG5256 TEF1 Translation elong 99.5 6E-14 1.3E-18 143.3 13.1 147 324-483 7-202 (428)
493 KOG0075 GTP-binding ADP-ribosy 99.5 6.3E-14 1.4E-18 122.1 11.1 146 325-491 21-181 (186)
494 PF08477 Miro: Miro-like prote 99.5 1.7E-14 3.6E-19 127.4 7.8 112 122-245 1-119 (119)
495 PF10662 PduV-EutP: Ethanolami 99.5 1E-13 2.2E-18 124.1 12.8 133 326-488 3-142 (143)
496 cd01853 Toc34_like Toc34-like 99.5 1.9E-13 4.1E-18 136.1 16.0 130 119-250 30-165 (249)
497 PRK13351 elongation factor G; 99.5 1E-13 2.2E-18 158.5 15.7 119 119-249 7-140 (687)
498 TIGR00503 prfC peptide chain r 99.5 1.9E-13 4.2E-18 149.9 17.0 116 120-247 11-145 (527)
499 PTZ00141 elongation factor 1- 99.5 9.8E-14 2.1E-18 149.8 14.2 151 120-282 7-203 (446)
500 COG0481 LepA Membrane GTPase L 99.5 3.8E-14 8.1E-19 145.7 10.0 163 118-294 7-188 (603)
No 1
>COG1160 Predicted GTPases [General function prediction only]
Probab=100.00 E-value=1.8e-90 Score=710.37 Aligned_cols=428 Identities=38% Similarity=0.576 Sum_probs=385.7
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANV 200 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 200 (607)
|.|||||+||||||||||+|++++.++|++.|| +|||+.++...|.+.+|.+|||+|++...+ +.+...+..+++.+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pG--vTRDr~y~~~~~~~~~f~lIDTgGl~~~~~-~~l~~~i~~Qa~~A 80 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPG--VTRDRIYGDAEWLGREFILIDTGGLDDGDE-DELQELIREQALIA 80 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCC--CccCCccceeEEcCceEEEEECCCCCcCCc-hHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999 999999999999999999999999994332 34666788999999
Q ss_pred hhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCCh
Q 007334 201 LAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGM 280 (607)
Q Consensus 201 ~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi 280 (607)
+.+||++|||+|+..|.++.|.+++++|+.. ++|+|+|+||+|... .+....+++.+|+++++++||.||.|+
T Consensus 81 i~eADvilfvVD~~~Git~~D~~ia~~Lr~~--~kpviLvvNK~D~~~-----~e~~~~efyslG~g~~~~ISA~Hg~Gi 153 (444)
T COG1160 81 IEEADVILFVVDGREGITPADEEIAKILRRS--KKPVILVVNKIDNLK-----AEELAYEFYSLGFGEPVPISAEHGRGI 153 (444)
T ss_pred HHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc--CCCEEEEEEcccCch-----hhhhHHHHHhcCCCCceEeehhhccCH
Confidence 9999999999999999999999999999965 799999999999874 356788999999999999999999999
Q ss_pred HHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCcee
Q 007334 281 TELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTR 360 (607)
Q Consensus 281 ~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~ 360 (607)
.+|++.+.+.++ .. ...+.+....+++||++|+||||||||+|+|+|++++++++.+|||+
T Consensus 154 ~dLld~v~~~l~-~~------------------e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTR 214 (444)
T COG1160 154 GDLLDAVLELLP-PD------------------EEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTR 214 (444)
T ss_pred HHHHHHHHhhcC-Cc------------------ccccccccCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccc
Confidence 999999998764 10 00000111357999999999999999999999999999999999999
Q ss_pred eeEEEEEEEcCeEEEEEecCCCccc-ccccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEE
Q 007334 361 DSVRVHFEYQGRTVYLVDTAGWLQR-EKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVV 429 (607)
Q Consensus 361 ~~~~~~~~~~~~~~~liDTpG~~~~-~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~iv 429 (607)
|.+...++++++.|.++||||+++. ...++.|.+++.++..++..||+|++|+|++++ ...+.++++||
T Consensus 215 D~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vI 294 (444)
T COG1160 215 DSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVI 294 (444)
T ss_pred cceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEE
Confidence 9999999999999999999999988 556778999999999999999999999999987 45678999999
Q ss_pred EEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 007334 430 IVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWLRK 509 (607)
Q Consensus 430 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~~l~~~l~~ 509 (607)
|+||||+.+.+. ... +.+..++...+.+..++|++++||++|.|+.++|+.+.+.++.|..+++|+.||+||+.
T Consensus 295 vvNKWDl~~~~~--~~~----~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~~ri~Ts~LN~~l~~ 368 (444)
T COG1160 295 VVNKWDLVEEDE--ATM----EEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYECATRRISTSLLNRVLED 368 (444)
T ss_pred EEEccccCCchh--hHH----HHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHHHhccccCHHHHHHHHHH
Confidence 999999987621 222 33345566678888999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCC-CCcCcEEEEeecCCCCCEEEEEecCCCCCCHHHHHHHHHHhHhhCCCCceeEEEEEeeccCCCC
Q 007334 510 VMGRHSWKDQ-SAQPKIKYFTQVKARPPTFVAFLSGKKTLSDAELRFLTKSLKEDFDLGGIPIRITQRSVPRKCG 583 (607)
Q Consensus 510 ~~~~~~~~~~-~~~~ki~~~~q~~~~pp~f~~~~n~~~~l~~~y~r~l~~~~~~~~~~~g~pi~~~~~~~~~~~~ 583 (607)
++..|||+.. |+++|++|++|++++||+|++|+|.|+.++++|+|||+|.||+.|+|.|+||+|.||.+.+++.
T Consensus 369 a~~~~pP~~~~G~r~ki~Ya~q~~~~PP~fvlf~N~~~~~~~sY~RyL~n~~R~~f~~~g~Pi~l~~k~~~~~~~ 443 (444)
T COG1160 369 AVAKHPPPVRYGRRLKIKYATQVSTNPPTFVLFGNRPKALHFSYKRYLENRLRKAFGFEGTPIRLEFKKKKNPYA 443 (444)
T ss_pred HHHhCCCCccCCceEEEEEEecCCCCCCEEEEEecchhhCchHHHHHHHHHHHHHcCCCCCcEEEEEecCCCccC
Confidence 9999987754 9999999999999999999999999999999999999999999999999999999999977764
No 2
>PRK03003 GTP-binding protein Der; Reviewed
Probab=100.00 E-value=9.6e-73 Score=614.60 Aligned_cols=421 Identities=35% Similarity=0.525 Sum_probs=351.8
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
..|+|+|||+||||||||+|+|++.+.+.+.+.++ +|++..+....+.+..+.+|||||+.... ..+...+..++.
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~g--vT~d~~~~~~~~~~~~~~l~DT~G~~~~~--~~~~~~~~~~~~ 112 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPG--VTRDRVSYDAEWNGRRFTVVDTGGWEPDA--KGLQASVAEQAE 112 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCC--CCEeeEEEEEEECCcEEEEEeCCCcCCcc--hhHHHHHHHHHH
Confidence 45899999999999999999999988888888888 99999999999999999999999987322 123334566777
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGL 278 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~ 278 (607)
.++..||++|+|+|++++.+..+..+.++++.. ++|+++|+||+|+.... .....++.+++..++++||++|.
T Consensus 113 ~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~--~~piilV~NK~Dl~~~~-----~~~~~~~~~g~~~~~~iSA~~g~ 185 (472)
T PRK03003 113 VAMRTADAVLFVVDATVGATATDEAVARVLRRS--GKPVILAANKVDDERGE-----ADAAALWSLGLGEPHPVSALHGR 185 (472)
T ss_pred HHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc--CCCEEEEEECccCCccc-----hhhHHHHhcCCCCeEEEEcCCCC
Confidence 889999999999999999988888888998875 78999999999986532 12234557788788999999999
Q ss_pred ChHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCc
Q 007334 279 GMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGL 358 (607)
Q Consensus 279 gi~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gt 358 (607)
|+++|++.|.+.+++.. + . .......++|+++|+||||||||+|+|++.++..+++++||
T Consensus 186 gi~eL~~~i~~~l~~~~----------~-------~---~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gt 245 (472)
T PRK03003 186 GVGDLLDAVLAALPEVP----------R-------V---GSASGGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGT 245 (472)
T ss_pred CcHHHHHHHHhhccccc----------c-------c---ccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCc
Confidence 99999999987664310 0 0 00012358999999999999999999999887889999999
Q ss_pred eeeeEEEEEEEcCeEEEEEecCCCccc-ccccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcE
Q 007334 359 TRDSVRVHFEYQGRTVYLVDTAGWLQR-EKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGL 427 (607)
Q Consensus 359 T~~~~~~~~~~~~~~~~liDTpG~~~~-~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ 427 (607)
|+|.....+.+++..+.||||||+.+. ....+.+.+...++..+++.||++++|+|++++ .....++|+
T Consensus 246 T~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~pi 325 (472)
T PRK03003 246 TVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRAL 325 (472)
T ss_pred cCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCE
Confidence 999999899999999999999998765 223335666667777889999999999999875 234468999
Q ss_pred EEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHH
Q 007334 428 VVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWL 507 (607)
Q Consensus 428 ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~~l~~~l 507 (607)
|+|+||||+.+.... ..+..++.+.+....++|++++||++|.|++++|+.+.+.++.+..+++|+.||+||
T Consensus 326 IiV~NK~Dl~~~~~~--------~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~~~~~~i~t~~ln~~~ 397 (472)
T PRK03003 326 VLAFNKWDLVDEDRR--------YYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETALESWDTRIPTGRLNAWL 397 (472)
T ss_pred EEEEECcccCChhHH--------HHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcccCCHHHHHHHH
Confidence 999999999753211 112233344445555789999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCC-CCCCcCcEEEEeecCCCCCEEEEEecCCCCCCHHHHHHHHHHhHhhCCCCceeEEEEEeeccC
Q 007334 508 RKVMGRHSWK-DQSAQPKIKYFTQVKARPPTFVAFLSGKKTLSDAELRFLTKSLKEDFDLGGIPIRITQRSVPR 580 (607)
Q Consensus 508 ~~~~~~~~~~-~~~~~~ki~~~~q~~~~pp~f~~~~n~~~~l~~~y~r~l~~~~~~~~~~~g~pi~~~~~~~~~ 580 (607)
++++..+||| ..|+++|++|++|+.++||+|++|+| +.++++|+|||+|+||+.|+|.|+||+|.||++.|
T Consensus 398 ~~~~~~~~~p~~~g~~~k~~y~~q~~~~pp~f~~~~~--~~~~~~y~~~l~~~~r~~~~~~g~pi~~~~~~~~~ 469 (472)
T PRK03003 398 GELVAATPPPVRGGKQPRILFATQASTRPPTFVLFTT--GFLEAGYRRFLERRLRETFGFEGSPIRISVRVREK 469 (472)
T ss_pred HHHHHcCCCCCCCCeeeeEEEEECCCCCCCEEEEEeC--CCCChHHHHHHHHHHHHHcCCCcceEEEEEEecCc
Confidence 9999999887 67899999999999999999999966 78999999999999999999999999999996643
No 3
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=100.00 E-value=2.8e-71 Score=600.33 Aligned_cols=417 Identities=40% Similarity=0.626 Sum_probs=357.3
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHh
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVL 201 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 201 (607)
+|+|||+||||||||+|+|++.+.+++++.++ +|++..+..+.+.+..+.+|||||+.... +.+...+..++..++
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g--~t~d~~~~~~~~~~~~~~liDTpG~~~~~--~~~~~~~~~~~~~~~ 76 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPG--VTRDRKYGDAEWGGREFILIDTGGIEEDD--DGLDKQIREQAEIAI 76 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCC--cccCceEEEEEECCeEEEEEECCCCCCcc--hhHHHHHHHHHHHHH
Confidence 48999999999999999999998888999998 99999999999999999999999986322 233445677888899
Q ss_pred hccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCChH
Q 007334 202 AKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMT 281 (607)
Q Consensus 202 ~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi~ 281 (607)
..+|++++|+|++++.+..+.++.+++++. ++|+++|+||+|+..... ...+++.+|+.+++++||++|.|++
T Consensus 77 ~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~--~~piilVvNK~D~~~~~~-----~~~~~~~lg~~~~~~vSa~~g~gv~ 149 (429)
T TIGR03594 77 EEADVILFVVDGREGLTPEDEEIAKWLRKS--GKPVILVANKIDGKKEDA-----VAAEFYSLGFGEPIPISAEHGRGIG 149 (429)
T ss_pred hhCCEEEEEEeCCCCCCHHHHHHHHHHHHh--CCCEEEEEECccCCcccc-----cHHHHHhcCCCCeEEEeCCcCCChH
Confidence 999999999999999999998999999886 789999999999876432 2345778899899999999999999
Q ss_pred HHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceee
Q 007334 282 ELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRD 361 (607)
Q Consensus 282 eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~ 361 (607)
++++.+.+.++... .........++|+++|+||||||||+|+|++.++..+++.+|||++
T Consensus 150 ~ll~~i~~~l~~~~--------------------~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~ 209 (429)
T TIGR03594 150 DLLDAILELLPEEE--------------------EEEEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRD 209 (429)
T ss_pred HHHHHHHHhcCccc--------------------ccccccCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceEC
Confidence 99999887664310 0001112458999999999999999999999988889999999999
Q ss_pred eEEEEEEEcCeEEEEEecCCCccccc-ccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEE
Q 007334 362 SVRVHFEYQGRTVYLVDTAGWLQREK-EKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVI 430 (607)
Q Consensus 362 ~~~~~~~~~~~~~~liDTpG~~~~~~-~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv 430 (607)
.....+.+++..+.+|||||+.+... ....+.+...++..+++.||++|+|+|++++ .....++|+|+|
T Consensus 210 ~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv 289 (429)
T TIGR03594 210 SIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIV 289 (429)
T ss_pred cEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEE
Confidence 99999999999999999999977632 3345677778888899999999999999976 234568999999
Q ss_pred EeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 007334 431 VNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWLRKV 510 (607)
Q Consensus 431 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~~l~~~l~~~ 510 (607)
+||||+.+. ....+ .+...+...+....++|++++||++|.|++++|+.+.+.++.+..+++|+.||+||.++
T Consensus 290 ~NK~Dl~~~---~~~~~----~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~~~~~i~t~~ln~~l~~~ 362 (429)
T TIGR03594 290 VNKWDLVKD---EKTRE----EFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYENANRRISTSKLNRVLEEA 362 (429)
T ss_pred EECcccCCC---HHHHH----HHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 999999832 11122 23344455566667789999999999999999999999999999999999999999999
Q ss_pred HHhCCCC-CCCCcCcEEEEeecCCCCCEEEEEecCCCCCCHHHHHHHHHHhHhhCCCCceeEEEEEe
Q 007334 511 MGRHSWK-DQSAQPKIKYFTQVKARPPTFVAFLSGKKTLSDAELRFLTKSLKEDFDLGGIPIRITQR 576 (607)
Q Consensus 511 ~~~~~~~-~~~~~~ki~~~~q~~~~pp~f~~~~n~~~~l~~~y~r~l~~~~~~~~~~~g~pi~~~~~ 576 (607)
+..+++| ..|+++|++|++|+..+||+|++|+|+|+.++++|+|||+|+||+.|+|.|+||+|.||
T Consensus 363 ~~~~~~p~~~~~~~k~~y~~q~~~~pp~~~~~~n~~~~~~~~y~~~l~~~~~~~~~~~g~p~~~~~~ 429 (429)
T TIGR03594 363 VAAHPPPLVNGRRLKIKYATQVGTNPPTFVLFGNRPELLPFSYKRYLENQFREAFGFEGTPIRLEFK 429 (429)
T ss_pred HHcCCCCCCCCceeeEEEEECCCCCCCEEEEEEcCcccCCHHHHHHHHHHHHHhcCCCcceEEEEeC
Confidence 9988777 67889999999999999999999999999999999999999999999999999999985
No 4
>PRK00093 GTP-binding protein Der; Reviewed
Probab=100.00 E-value=2.3e-70 Score=593.82 Aligned_cols=418 Identities=40% Similarity=0.618 Sum_probs=356.9
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANV 200 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 200 (607)
++|+|||+||||||||+|+|++.+.+.+.+.++ +|++..+....+.+..+.+|||||+..... .....+..++..+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~--~t~d~~~~~~~~~~~~~~liDT~G~~~~~~--~~~~~~~~~~~~~ 77 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPG--VTRDRIYGEAEWLGREFILIDTGGIEPDDD--GFEKQIREQAELA 77 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCC--CcccceEEEEEECCcEEEEEECCCCCCcch--hHHHHHHHHHHHH
Confidence 689999999999999999999998888888888 999999999999999999999999985221 2444566677788
Q ss_pred hhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCCh
Q 007334 201 LAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGM 280 (607)
Q Consensus 201 ~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi 280 (607)
+..+|++|+|+|++++.+..+.++.+|+++. ++|+++|+||+|+... .....+++.+++.+++++||++|.|+
T Consensus 78 ~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~--~~piilv~NK~D~~~~-----~~~~~~~~~lg~~~~~~iSa~~g~gv 150 (435)
T PRK00093 78 IEEADVILFVVDGRAGLTPADEEIAKILRKS--NKPVILVVNKVDGPDE-----EADAYEFYSLGLGEPYPISAEHGRGI 150 (435)
T ss_pred HHhCCEEEEEEECCCCCCHHHHHHHHHHHHc--CCcEEEEEECccCccc-----hhhHHHHHhcCCCCCEEEEeeCCCCH
Confidence 9999999999999999999888899999887 7899999999996542 23345567788877999999999999
Q ss_pred HHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCcee
Q 007334 281 TELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTR 360 (607)
Q Consensus 281 ~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~ 360 (607)
+++++.|.+..+.. .........++|+++|+||+|||||+|+|++.++..+++.+|+|+
T Consensus 151 ~~l~~~I~~~~~~~---------------------~~~~~~~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~ 209 (435)
T PRK00093 151 GDLLDAILEELPEE---------------------EEEDEEDEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTR 209 (435)
T ss_pred HHHHHHHHhhCCcc---------------------ccccccccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceE
Confidence 99999987632210 000011236899999999999999999999998899999999999
Q ss_pred eeEEEEEEEcCeEEEEEecCCCcccc-cccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEE
Q 007334 361 DSVRVHFEYQGRTVYLVDTAGWLQRE-KEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVV 429 (607)
Q Consensus 361 ~~~~~~~~~~~~~~~liDTpG~~~~~-~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~iv 429 (607)
+.+...+.+++..+.+|||||+.+.. .....+.++..++.++++.||++|+|+|++++ .....++|+|+
T Consensus 210 ~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~iv 289 (435)
T PRK00093 210 DSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVI 289 (435)
T ss_pred EEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEE
Confidence 99988888999999999999987763 23346677778888899999999999999976 23456899999
Q ss_pred EEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 007334 430 IVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWLRK 509 (607)
Q Consensus 430 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~~l~~~l~~ 509 (607)
|+||||+.+... . +.+..++...+....++|++++||++|.|++++++.+.+.+..+..+++|+.+|+||.+
T Consensus 290 v~NK~Dl~~~~~----~----~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~~~~~~~i~t~~ln~~l~~ 361 (435)
T PRK00093 290 VVNKWDLVDEKT----M----EEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAYENANRRISTSVLNRVLEE 361 (435)
T ss_pred EEECccCCCHHH----H----HHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHcCcCChHHHHHHHHH
Confidence 999999984321 1 22333444555666778999999999999999999999999999999999999999999
Q ss_pred HHHhCCCC-CCCCcCcEEEEeecCCCCCEEEEEecCCCCCCHHHHHHHHHHhHhhCCCCceeEEEEEeec
Q 007334 510 VMGRHSWK-DQSAQPKIKYFTQVKARPPTFVAFLSGKKTLSDAELRFLTKSLKEDFDLGGIPIRITQRSV 578 (607)
Q Consensus 510 ~~~~~~~~-~~~~~~ki~~~~q~~~~pp~f~~~~n~~~~l~~~y~r~l~~~~~~~~~~~g~pi~~~~~~~ 578 (607)
++..+++| ..|+.+|++|++|+..+||+|++|+|.++.++++|+|||+|+||+.|+|.|+||+|.||++
T Consensus 362 ~~~~~~~p~~~~~~~k~~~~~q~~~~pp~f~~~~n~~~~~~~~y~~~l~~~~r~~~~~~g~p~~~~~~~~ 431 (435)
T PRK00093 362 AVERHPPPLVKGRRLKIKYATQVGTNPPTFVLFVNDPELLPFSYKRYLENQLREAFDFEGTPIRLEFREK 431 (435)
T ss_pred HHHcCCCCCCCCeeeeEEEEEcCCCCCCEEEEEeCCcccCCHHHHHHHHHHHHHHcCCCcccEEEEEecC
Confidence 99998877 6788999999999999999999999999999999999999999999999999999999964
No 5
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=100.00 E-value=8.4e-69 Score=609.18 Aligned_cols=423 Identities=33% Similarity=0.480 Sum_probs=353.5
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
..++|+|+|+||||||||+|+|++.+.+++++.+| +|++.......+.+..+.+|||||+..... .+...+..++.
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pG--vT~d~~~~~~~~~~~~~~liDT~G~~~~~~--~~~~~~~~~~~ 349 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPG--VTRDRVSYDAEWAGTDFKLVDTGGWEADVE--GIDSAIASQAQ 349 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCC--eeEEEEEEEEEECCEEEEEEeCCCcCCCCc--cHHHHHHHHHH
Confidence 45899999999999999999999988888999998 999999998889999999999999874321 23335667778
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGL 278 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~ 278 (607)
.++..||++|+|+|++++.+..+.++.++|+.. ++|+|+|+||+|+... ......++.++++.++++||++|.
T Consensus 350 ~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~--~~pvIlV~NK~D~~~~-----~~~~~~~~~lg~~~~~~iSA~~g~ 422 (712)
T PRK09518 350 IAVSLADAVVFVVDGQVGLTSTDERIVRMLRRA--GKPVVLAVNKIDDQAS-----EYDAAEFWKLGLGEPYPISAMHGR 422 (712)
T ss_pred HHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhc--CCCEEEEEECcccccc-----hhhHHHHHHcCCCCeEEEECCCCC
Confidence 889999999999999999998888888998875 8999999999998653 123345667788888999999999
Q ss_pred ChHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCc
Q 007334 279 GMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGL 358 (607)
Q Consensus 279 gi~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gt 358 (607)
|+++|++.|.+.++... . +... ......++|+++|+||||||||+|+|++.++..+++++||
T Consensus 423 GI~eLl~~i~~~l~~~~---------~------~~~a---~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gt 484 (712)
T PRK09518 423 GVGDLLDEALDSLKVAE---------K------TSGF---LTPSGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGT 484 (712)
T ss_pred CchHHHHHHHHhccccc---------c------cccc---cCCCCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCC
Confidence 99999999987664310 0 0000 0011247999999999999999999999887788999999
Q ss_pred eeeeEEEEEEEcCeEEEEEecCCCccc-ccccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcE
Q 007334 359 TRDSVRVHFEYQGRTVYLVDTAGWLQR-EKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGL 427 (607)
Q Consensus 359 T~~~~~~~~~~~~~~~~liDTpG~~~~-~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ 427 (607)
|+|.+...+.+++..+.||||||+.+. ...++.+.+...++..+++.||++++|+|++++ .....++|+
T Consensus 485 T~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~pi 564 (712)
T PRK09518 485 TRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRAL 564 (712)
T ss_pred CcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCE
Confidence 999999889999999999999998765 223334566667778889999999999999876 233468999
Q ss_pred EEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHH
Q 007334 428 VVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWL 507 (607)
Q Consensus 428 ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~~l~~~l 507 (607)
|+|+||||+.+... .+ .+...+...+....+.+++++||++|.|++++++.+.+.+.++..+++|+.||+||
T Consensus 565 IiV~NK~DL~~~~~----~~----~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~~~~~i~T~~Ln~~l 636 (712)
T PRK09518 565 VLVFNKWDLMDEFR----RQ----RLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALESWDQRIPTGKLNAFL 636 (712)
T ss_pred EEEEEchhcCChhH----HH----HHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcccCChHHHHHHH
Confidence 99999999976421 11 12223333444556789999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCC-CCCCcCcEEEEeecCCCCCEEEEEecCCCCCCHHHHHHHHHHhHhhCCCCceeEEEEEeeccC
Q 007334 508 RKVMGRHSWK-DQSAQPKIKYFTQVKARPPTFVAFLSGKKTLSDAELRFLTKSLKEDFDLGGIPIRITQRSVPR 580 (607)
Q Consensus 508 ~~~~~~~~~~-~~~~~~ki~~~~q~~~~pp~f~~~~n~~~~l~~~y~r~l~~~~~~~~~~~g~pi~~~~~~~~~ 580 (607)
++++..+|+| ..|+++|++|++|+..+||+|++|+| +.++++|+|||+|+||+.|+|.|+||+|.||++.|
T Consensus 637 ~~~~~~~~~p~~~g~~~ki~y~~q~~~~Pp~f~~f~~--~~~~~~y~r~l~~~~r~~~~~~g~pi~~~~~~~~~ 708 (712)
T PRK09518 637 GKIQAEHPHPLRGGKQPRILFATQASTRPPRFVIFTT--GFLEHGYRRFLERSLREEFGFEGSPIQISVNIREK 708 (712)
T ss_pred HHHHhhCCCCccCCeeeeEEEEECCCCCCCEEEEEcC--CCCChHHHHHHHHHHHHHcCCccceEEEEEEeccc
Confidence 9999988887 67899999999999999999999977 78999999999999999999999999999997743
No 6
>COG2262 HflX GTPases [General function prediction only]
Probab=100.00 E-value=4e-38 Score=319.13 Aligned_cols=249 Identities=22% Similarity=0.238 Sum_probs=208.2
Q ss_pred CCCCCCcchhhhhhhhhhhhhccccchhhhhhhhhcccccccccccccccc------cCccCCCCCCCCCCccccccccc
Q 007334 31 PVNLCKPFNFTLNNYSHIRASAAGSLYQVGSSLKCNLLPEVPRGFCGVVQN------EALEDTHVEPEPDGVVEDHKVKP 104 (607)
Q Consensus 31 ~~~~~~~~~~~l~~~~~~~~~~~~~~~qv~la~l~~~~~~~~~~~~~~~~~------~g~g~~~~~~~~~~~~~~~~~~~ 104 (607)
.+...+++.++|..+. .||.|.++++|||||||+|++||+.+.|.++++. +|||+++++.++|.+ +.||..
T Consensus 92 ~~kVIDRt~LILdIFa-~RA~S~EgkLQVeLAqL~Y~lpRl~~~~~~l~~~GggiG~rGpGE~~lE~drR~i--r~rI~~ 168 (411)
T COG2262 92 GVKVIDRTQLILDIFA-QRARSREGKLQVELAQLRYELPRLVGSGSHLSRLGGGIGFRGPGETQLETDRRRI--RRRIAK 168 (411)
T ss_pred CCEEEehHhHHHHHHH-HHhccchhhhhhhHHhhhhhhhHhHhhhhhcccccCCCCCCCCCchHHHHHHHHH--HHHHHH
Confidence 3466677777777764 8999999999999999999999999999999955 889999999999999 999999
Q ss_pred cccCCccccc--------ccccCCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC-CeeEEEe
Q 007334 105 LYEKPVDFTK--------IDINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG-DLRFKVL 175 (607)
Q Consensus 105 l~~~~~~~~~--------~~~~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~-~~~~~li 175 (607)
+++++..+.+ +..+..|.|+||||+|+|||||||+|++... .+.+..+ +|.|.....+.+. |..+.+.
T Consensus 169 i~~eLe~v~~~R~~~R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~-~~~d~LF--ATLdpttR~~~l~~g~~vlLt 245 (411)
T COG2262 169 LKRELENVEKAREPRRKKRSRSGIPLVALVGYTNAGKSTLFNALTGADV-YVADQLF--ATLDPTTRRIELGDGRKVLLT 245 (411)
T ss_pred HHHHHHHHHHHHHHHhhhhcccCCCeEEEEeeccccHHHHHHHHhccCe-ecccccc--ccccCceeEEEeCCCceEEEe
Confidence 9999987665 3346789999999999999999999998654 3566776 8999888888876 6899999
Q ss_pred cCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHH-HHHHHHhh-CCCCcEEEEecCCCcccCCcCc
Q 007334 176 DSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKH-APQIKPIVAMNKCESLHNGTGS 253 (607)
Q Consensus 176 DTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~ 253 (607)
||.||+.+.|+... ..|..|++...+||+++||+|+|++...+..+ +.+.|.+. ..++|+|+|+||+|+..+..
T Consensus 246 DTVGFI~~LP~~LV--~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~-- 321 (411)
T COG2262 246 DTVGFIRDLPHPLV--EAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE-- 321 (411)
T ss_pred cCccCcccCChHHH--HHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh--
Confidence 99999999998665 78999999999999999999999996555543 66778776 45689999999999887532
Q ss_pred HHHHHHHHHhcCCCCcEEeecCCCCChHHHHHHhccchHH
Q 007334 254 LAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 254 ~~~~~~~~~~~~~~~~i~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
....... +.+.++++||++|+|++.|++.|.+.+..
T Consensus 322 ---~~~~~~~-~~~~~v~iSA~~~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 322 ---ILAELER-GSPNPVFISAKTGEGLDLLRERIIELLSG 357 (411)
T ss_pred ---hhhhhhh-cCCCeEEEEeccCcCHHHHHHHHHHHhhh
Confidence 1112222 22368999999999999999999987764
No 7
>PRK11058 GTPase HflX; Provisional
Probab=100.00 E-value=1.3e-35 Score=316.12 Aligned_cols=249 Identities=19% Similarity=0.222 Sum_probs=199.9
Q ss_pred CCCCCCcchhhhhhhhhhhhhccccchhhhhhhhhcccccccccccccccc------cCccCCCCCCCCCCccccccccc
Q 007334 31 PVNLCKPFNFTLNNYSHIRASAAGSLYQVGSSLKCNLLPEVPRGFCGVVQN------EALEDTHVEPEPDGVVEDHKVKP 104 (607)
Q Consensus 31 ~~~~~~~~~~~l~~~~~~~~~~~~~~~qv~la~l~~~~~~~~~~~~~~~~~------~g~g~~~~~~~~~~~~~~~~~~~ 104 (607)
.+++++++.++|..+. .||+|+++++|||||+|+|++||+.+.|.+++++ +|||++++|.+++.+ +.++..
T Consensus 97 ~~~v~DR~~lil~IF~-~rA~t~e~klqvelA~l~y~~prl~~~~~~l~~~~gg~g~~g~ge~~~e~d~r~i--~~ri~~ 173 (426)
T PRK11058 97 ECRVIDRTGLILDIFA-QRARTHEGKLQVELAQLRHLATRLVRGWTHLERQKGGIGLRGPGETQLETDRRLL--RNRIVQ 173 (426)
T ss_pred CCeEecchhHHHHHHH-HhcCChHHHHHHHHHhhhhhhhhhhccccchhhhcCCCCCCCCChhHhHHHHHHH--HHHHHH
Confidence 4578889998888875 8999999999999999999999999999999998 789999999999999 999999
Q ss_pred cccCCcccccc--------cccCCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCe-eEEEe
Q 007334 105 LYEKPVDFTKI--------DINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDL-RFKVL 175 (607)
Q Consensus 105 l~~~~~~~~~~--------~~~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~-~~~li 175 (607)
+++++.++.+. ...+.|.|+|||+||||||||||+|++.+.. +.+.++ +|+|...+.+.+.+. .+.+|
T Consensus 174 l~~~L~~~~~~r~~~r~~r~~~~~p~ValVG~~NaGKSSLlN~Lt~~~~~-v~~~~~--tTld~~~~~i~l~~~~~~~l~ 250 (426)
T PRK11058 174 ILSRLERVEKQREQGRRARIKADVPTVSLVGYTNAGKSTLFNRITEARVY-AADQLF--ATLDPTLRRIDVADVGETVLA 250 (426)
T ss_pred HHHHHHHHHHhHHHHHHHhhhcCCCEEEEECCCCCCHHHHHHHHhCCcee-eccCCC--CCcCCceEEEEeCCCCeEEEE
Confidence 98888765431 1134689999999999999999999998765 677777 899998888877664 89999
Q ss_pred cCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHH-HHHHHHhh-CCCCcEEEEecCCCcccCCcCc
Q 007334 176 DSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKH-APQIKPIVAMNKCESLHNGTGS 253 (607)
Q Consensus 176 DTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~ 253 (607)
||||+....|++.. +.+..+...+..||++|+|+|++++.+..+.. +.+++... ..++|+++|+||+|+.....
T Consensus 251 DTaG~~r~lp~~lv--e~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~-- 326 (426)
T PRK11058 251 DTVGFIRHLPHDLV--AAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE-- 326 (426)
T ss_pred ecCcccccCCHHHH--HHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh--
Confidence 99999765555443 34566788899999999999999987666643 45666654 23689999999999875311
Q ss_pred HHHHHHHHHhcCCCCcEEeecCCCCChHHHHHHhccchH
Q 007334 254 LAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 254 ~~~~~~~~~~~~~~~~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
... .....+....+++||++|.|+++|++.|.+.+.
T Consensus 327 --~~~-~~~~~~~~~~v~ISAktG~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 327 --PRI-DRDEENKPIRVWLSAQTGAGIPLLFQALTERLS 362 (426)
T ss_pred --HHH-HHHhcCCCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 111 112234433589999999999999999987764
No 8
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=100.00 E-value=6.4e-34 Score=296.66 Aligned_cols=245 Identities=20% Similarity=0.247 Sum_probs=196.5
Q ss_pred CCCCCCcchhhhhhhhhhhhhccccchhhhhhhhhcccccccccccccccc------cCccCCCCCCCCCCccccccccc
Q 007334 31 PVNLCKPFNFTLNNYSHIRASAAGSLYQVGSSLKCNLLPEVPRGFCGVVQN------EALEDTHVEPEPDGVVEDHKVKP 104 (607)
Q Consensus 31 ~~~~~~~~~~~l~~~~~~~~~~~~~~~qv~la~l~~~~~~~~~~~~~~~~~------~g~g~~~~~~~~~~~~~~~~~~~ 104 (607)
.+++.+++.++|..+. .||+|++|++|+++|+|+|.+||+.+.|.+++++ +|||++.++.+++.+ +.|+..
T Consensus 89 ~~~v~Dr~~lil~iF~-~ra~t~e~klqv~la~l~~~l~r~~~~~~~l~~~~~~i~~~g~gE~~~~~~~~~i--~~ri~~ 165 (351)
T TIGR03156 89 GCRVIDRTGLILDIFA-QRARTHEGKLQVELAQLKYLLPRLVGGWTHLSRQGGGIGTRGPGETQLETDRRLI--RERIAQ 165 (351)
T ss_pred CCcccchHHHHHHHHH-HhccChHHHHHHHHHhccchhhhhhhhHHHHHhhcCCCCCCCCChhHHHHHHHHH--HHHHHH
Confidence 4578888888888875 8999999999999999999999999999888777 678888888889989 899999
Q ss_pred cccCCcccccc--------cccCCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee-CCeeEEEe
Q 007334 105 LYEKPVDFTKI--------DINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL-GDLRFKVL 175 (607)
Q Consensus 105 l~~~~~~~~~~--------~~~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~-~~~~~~li 175 (607)
+++++..+.+. ..++.++|+|+|+||||||||+|+|++.+ ..+.+.++ +|+|.....+.+ ++..+.+|
T Consensus 166 l~~~L~~~~~~~~~~r~~r~~~~~~~ValvG~~NvGKSSLln~L~~~~-~~v~~~~~--tT~d~~~~~i~~~~~~~i~l~ 242 (351)
T TIGR03156 166 LKKELEKVEKQRERQRRRRKRADVPTVALVGYTNAGKSTLFNALTGAD-VYAADQLF--ATLDPTTRRLDLPDGGEVLLT 242 (351)
T ss_pred HHHHHHHHHHHHHHHHhhhcccCCcEEEEECCCCCCHHHHHHHHhCCc-eeeccCCc--cccCCEEEEEEeCCCceEEEE
Confidence 99988866542 12456999999999999999999999976 56777787 899999888888 67899999
Q ss_pred cCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhhC-CCCcEEEEecCCCcccCCcCc
Q 007334 176 DSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKHA-PQIKPIVAMNKCESLHNGTGS 253 (607)
Q Consensus 176 DTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~~-~~~p~ilV~NK~D~~~~~~~~ 253 (607)
||||+....|++.. +.+..+..++.+||++++|+|++++.+..+. .+.+++.... .++|+++|+||+|+.....
T Consensus 243 DT~G~~~~l~~~li--e~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~-- 318 (351)
T TIGR03156 243 DTVGFIRDLPHELV--AAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPR-- 318 (351)
T ss_pred ecCcccccCCHHHH--HHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHh--
Confidence 99999755554433 3456678889999999999999998776653 2445665542 3689999999999975321
Q ss_pred HHHHHHHHHhcCCCCcEEeecCCCCChHHHHHHhccc
Q 007334 254 LAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPS 290 (607)
Q Consensus 254 ~~~~~~~~~~~~~~~~i~iSA~~g~gi~eL~~~i~~~ 290 (607)
. ..... +..+++++||++|.|+++|++.|.+.
T Consensus 319 ---v-~~~~~-~~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 319 ---I-ERLEE-GYPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred ---H-HHHHh-CCCCEEEEEccCCCCHHHHHHHHHhh
Confidence 1 11111 22367999999999999999998653
No 9
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.9e-35 Score=300.13 Aligned_cols=423 Identities=33% Similarity=0.375 Sum_probs=255.1
Q ss_pred ccCCcccccccccCCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccC
Q 007334 106 YEKPVDFTKIDINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEAT 185 (607)
Q Consensus 106 ~~~~~~~~~~~~~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~ 185 (607)
+..-.+..+..+.-.+.+.+.|++|+||++|.|. .....+.+.++ +|+|..++...++...|...||.|+.....
T Consensus 61 R~sG~~a~kv~r~L~~s~~v~~~~~~~~~~l~~~---~~r~~~~~e~~--v~~D~~l~l~~~gp~sFtgeD~~el~~hgs 135 (531)
T KOG1191|consen 61 RISGPDATKVARRLLRSVMVPKRRNAGLRALYNP---EVRVYVVDEDG--VTRDRALGLYFLGPQSFTGEDVVELQTHGS 135 (531)
T ss_pred EecCchHHHHHHHhccccccCCCCccccccccCh---hhcccccCCCC--cchhhhhhccccCCceeeeeeeEEEEEecC
Confidence 3333333333334467899999999999999999 22333445566 999999998888999999999999985433
Q ss_pred chhHHHHHHHHHHHHhhcc-CEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhc
Q 007334 186 SGSILDRTAGMTANVLAKT-QFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLML 264 (607)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~a-d~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~ 264 (607)
.... ...+..+..+ ---+-..+..+...........+|.+..+-..+|.+-|+.-.... ..+....++.+
T Consensus 136 ~avv-----~~~l~a~~~sg~~~ir~a~~geft~Raf~ngk~~Ltq~eg~~~lI~a~t~~q~~~A----l~~v~g~~~~l 206 (531)
T KOG1191|consen 136 SAVV-----VGVLTALGASGIPGIRLAEPGEFTRRAFLNGKLDLTQAEGIIDLIVAETESQRRAA----LDEVAGEALAL 206 (531)
T ss_pred ccch-----hhHHHHhhhccCCCccccCchhhhhhhhhccccchhhhcChhhhhhhhhHhhhhhh----hhhhcchhHHh
Confidence 2211 1111222200 000111111111111112223345444333444555554432221 01111111111
Q ss_pred CCC-CcEEeecCCCCC----------------------hHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccc
Q 007334 265 GFG-DPIAISAETGLG----------------------MTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDES 321 (607)
Q Consensus 265 ~~~-~~i~iSA~~g~g----------------------i~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 321 (607)
.+. ..+.+++.++.+ ..+|.+.+...+.. ....+.-
T Consensus 207 ~~~~r~~lIe~~a~l~a~idf~e~~~l~~~~t~~~~~~~~~l~d~v~s~l~~---------------------~~~~e~l 265 (531)
T KOG1191|consen 207 CFGWRKILIEALAGLEARIDFEEERPLEEIETVEIFIESLSLLDDVLSHLNK---------------------ADEIERL 265 (531)
T ss_pred hhhHHHHHHHHHhccceeechhhcCchhhccchhhhhHHHHHHHHHHHHHHh---------------------hhhHHHh
Confidence 111 111222222211 11222222222211 0111222
Q ss_pred cCCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 322 KLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 322 ~~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
+.+++|+|+|+||||||||+|+|+..++++|++.||||||.+...++++|.++.|.||||+++ +.....|.+++.++.+
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe-~~~~~iE~~gI~rA~k 344 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIRE-ESNDGIEALGIERARK 344 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEecccccc-ccCChhHHHhHHHHHH
Confidence 346899999999999999999999999999999999999999999999999999999999988 4456688999999999
Q ss_pred HHhhccEEEEEeccchh---------hHH-------------hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHh
Q 007334 402 NLMRAHVVALVLDAEEV---------RAV-------------EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQT 459 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~---------~~~-------------~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 459 (607)
.+..||++++|+|+... ..+ ....|++++.||.|+...-.-. .+.-..+...
T Consensus 345 ~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~---~~~~~~~~~~--- 418 (531)
T KOG1191|consen 345 RIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEM---TKIPVVYPSA--- 418 (531)
T ss_pred HHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccc---cCCceecccc---
Confidence 99999999999999332 000 1237899999999998651100 0000000000
Q ss_pred hCCCCCCCCEEEcccCCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC--CCCCcCcEEEEeecCCCCCE
Q 007334 460 VIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWLRKVMGRHSWK--DQSAQPKIKYFTQVKARPPT 537 (607)
Q Consensus 460 ~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~--~~~~~~ki~~~~q~~~~pp~ 537 (607)
.-....-.++++|+++++|+..|...+ +|.|....+..+.++ ..+++.+.. .|....|
T Consensus 419 -~~~~~~~i~~~vs~~tkeg~~~L~~al---------------l~~~~~~~~~~~s~~~t~~~~r~~~~--~r~~~~~-- 478 (531)
T KOG1191|consen 419 -EGRSVFPIVVEVSCTTKEGCERLSTAL---------------LNIVERLVVSPHSAPPTLSQKRIKEL--LRTCAAP-- 478 (531)
T ss_pred -ccCcccceEEEeeechhhhHHHHHHHH---------------HHHHHHhhcCCCCCchhhcchhHHHH--HHhhhhh--
Confidence 000112245568999999988776554 455555555444443 233333333 3333333
Q ss_pred EEEEecCCCCCCHHHHHHHHHHhHhhCCCCceeEEEEEeeccCCCCCCCCCCccccccccccccc
Q 007334 538 FVAFLSGKKTLSDAELRFLTKSLKEDFDLGGIPIRITQRSVPRKCGSSSSRQNTGQKVGRTFSDK 602 (607)
Q Consensus 538 f~~~~n~~~~l~~~y~r~l~~~~~~~~~~~g~pi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (607)
..|.+|+.++++++++|.|.|+|+..+...+-.++-+.....+...||+..+|
T Consensus 479 ------------~l~~~~~~k~~~~D~~la~~~lR~a~~~i~r~tggggte~vls~ifqkfcigK 531 (531)
T KOG1191|consen 479 ------------ELERRFLAKQLKEDIDLAGEPLRLAQRSIARITGGGGTEEVLSSIFQKFCIGK 531 (531)
T ss_pred ------------hHHHHHHhhhcccchhhccchHHHHHhhhcccCCCCchhhHHHHHHHHhhcCC
Confidence 78999999999999999999999998877666665555566666666666655
No 10
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.96 E-value=2.3e-30 Score=252.12 Aligned_cols=246 Identities=17% Similarity=0.126 Sum_probs=197.2
Q ss_pred CCCCCCCcchhhhhhhhhhhhhccccchhhhhhhhhcccccccccccccccc-----cCccCCCCCCCCCCccccccccc
Q 007334 30 NPVNLCKPFNFTLNNYSHIRASAAGSLYQVGSSLKCNLLPEVPRGFCGVVQN-----EALEDTHVEPEPDGVVEDHKVKP 104 (607)
Q Consensus 30 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~qv~la~l~~~~~~~~~~~~~~~~~-----~g~g~~~~~~~~~~~~~~~~~~~ 104 (607)
..|+.|+++..+|..+. .+|.|++|.+|+++|+.+|..+|+.+.|.++.++ .|+|+.+++.+.+.+ .+.++.+
T Consensus 78 ~~VrvfDr~~~vl~if~-q~a~T~earlqvalAempy~~~rl~r~~~hl~r~~g~~v~gsges~id~d~~rl-lr~kea~ 155 (410)
T KOG0410|consen 78 VRVRVFDRRHTVLQIFE-QEAVTAEARLQVALAEMPYVGGRLERELQHLRRQSGGQVKGSGESIIDRDIRRL-LRIKEAQ 155 (410)
T ss_pred cceeeecchhhHHHHHH-HHhhhHHHHHhhhhhcCccccchHHHHHHHHHhcCCCcccCccchHhHHHHHHH-HHHHHHH
Confidence 45689999998888764 7788899999999999999999999999999887 788999998888433 3888889
Q ss_pred cccCCccccccc-------ccCCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee-CCeeEEEec
Q 007334 105 LYEKPVDFTKID-------INLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL-GDLRFKVLD 176 (607)
Q Consensus 105 l~~~~~~~~~~~-------~~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~-~~~~~~liD 176 (607)
++++|.++.+.. ....|.|++|||+|+|||||+++|++... ...+..+ .|.|........ +|..+.+.|
T Consensus 156 lrKeL~~vrrkr~~r~gr~~~s~pviavVGYTNaGKsTLikaLT~Aal-~p~drLF--ATLDpT~h~a~Lpsg~~vlltD 232 (410)
T KOG0410|consen 156 LRKELQRVRRKRQRRVGREGESSPVIAVVGYTNAGKSTLIKALTKAAL-YPNDRLF--ATLDPTLHSAHLPSGNFVLLTD 232 (410)
T ss_pred HHHHHHHHHHHHhhhhccccCCCceEEEEeecCccHHHHHHHHHhhhc-Cccchhh--eeccchhhhccCCCCcEEEEee
Confidence 998888766532 33569999999999999999999996543 3455555 777776555443 678899999
Q ss_pred CCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHH-HHHHHHhhC-CC----CcEEEEecCCCcccCC
Q 007334 177 SAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKHA-PQ----IKPIVAMNKCESLHNG 250 (607)
Q Consensus 177 TpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~~-~~----~p~ilV~NK~D~~~~~ 250 (607)
|.||.+++|++.+ ..|+.|++.+.+||+++||+|+|+|..+++.+ +...|++.. +. ..+|-|.||+|..+..
T Consensus 233 TvGFisdLP~~Lv--aAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~ 310 (410)
T KOG0410|consen 233 TVGFISDLPIQLV--AAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDE 310 (410)
T ss_pred chhhhhhCcHHHH--HHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhcccccccccc
Confidence 9999999998766 78999999999999999999999998888755 778888772 11 2257889999987653
Q ss_pred cCcHHHHHHHHHhcCCCCcEEeecCCCCChHHHHHHhccchHH
Q 007334 251 TGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
... ... ..+++||++|.|++++++.+...+..
T Consensus 311 ~e~--------E~n---~~v~isaltgdgl~el~~a~~~kv~~ 342 (410)
T KOG0410|consen 311 VEE--------EKN---LDVGISALTGDGLEELLKAEETKVAS 342 (410)
T ss_pred Ccc--------ccC---CccccccccCccHHHHHHHHHHHhhh
Confidence 211 011 25899999999999999998876643
No 11
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.94 E-value=9.1e-27 Score=240.31 Aligned_cols=216 Identities=29% Similarity=0.338 Sum_probs=161.4
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHh
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLM 404 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~ 404 (607)
..|+|||+||||||||+|+|+|...++|+++||+|||.+++...|.+..+.++||+|+.... ..........+++.++.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~-~~~l~~~i~~Qa~~Ai~ 82 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGD-EDELQELIREQALIAIE 82 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCC-chHHHHHHHHHHHHHHH
Confidence 46999999999999999999999999999999999999999999999999999999986542 12345566788999999
Q ss_pred hccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEccc
Q 007334 405 RAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSA 474 (607)
Q Consensus 405 ~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA 474 (607)
.||++|||+|+..+ .....++|+|+|+||+|-...+.. ...+.....-.+++|||
T Consensus 83 eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e~~---------------~~efyslG~g~~~~ISA 147 (444)
T COG1160 83 EADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKAEEL---------------AYEFYSLGFGEPVPISA 147 (444)
T ss_pred hCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchhhhh---------------HHHHHhcCCCCceEeeh
Confidence 99999999999886 223456999999999997633110 01111223347889999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCC-CCcCcEEEEeecCCCCCEEEEEecCCCCCCHHHH
Q 007334 475 LEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWLRKVMGRHSWKDQ-SAQPKIKYFTQVKARPPTFVAFLSGKKTLSDAEL 553 (607)
Q Consensus 475 ~~g~gv~~l~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~ki~~~~q~~~~pp~f~~~~n~~~~l~~~y~ 553 (607)
.+|.|+.+|++++.+.+. ..... .... ....|+. +-.+|. .++++|.|...
T Consensus 148 ~Hg~Gi~dLld~v~~~l~-~~e~~-----------------~~~~~~~~ikia----iiGrPN------vGKSsLiN~il 199 (444)
T COG1160 148 EHGRGIGDLLDAVLELLP-PDEEE-----------------EEEEETDPIKIA----IIGRPN------VGKSSLINAIL 199 (444)
T ss_pred hhccCHHHHHHHHHhhcC-Ccccc-----------------cccccCCceEEE----EEeCCC------CCchHHHHHhc
Confidence 999999999998887542 11110 0000 1223333 334555 67777766642
Q ss_pred ---HH--------HHHHhHhhCCCCceeEEEEEeeccCCCCC
Q 007334 554 ---RF--------LTKSLKEDFDLGGIPIRITQRSVPRKCGS 584 (607)
Q Consensus 554 ---r~--------l~~~~~~~~~~~g~pi~~~~~~~~~~~~~ 584 (607)
|- ..+.|...|.+.|..+.++++++.++++.
T Consensus 200 geeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~k 241 (444)
T COG1160 200 GEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGK 241 (444)
T ss_pred cCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccc
Confidence 22 22889999999999999999999876665
No 12
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.94 E-value=2.5e-26 Score=209.99 Aligned_cols=146 Identities=31% Similarity=0.432 Sum_probs=112.0
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH-
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL- 403 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i- 403 (607)
++|+++|.||||||||+|+|+|.. ..++++||+|++...+.+.+++..+.++||||++...... .++ ..+..++
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~-~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s-~ee---~v~~~~l~ 75 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK-QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKS-EEE---RVARDYLL 75 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS-EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSS-HHH---HHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCC-cHH---HHHHHHHh
Confidence 479999999999999999999986 8899999999999999999999999999999987763221 121 2223343
Q ss_pred -hhccEEEEEeccchh--------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEccc
Q 007334 404 -MRAHVVALVLDAEEV--------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSA 474 (607)
Q Consensus 404 -~~ad~~llViD~~~~--------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA 474 (607)
..+|++++|+|++.. +..+.++|+|+|+||+|+..........+.+.+.+ ++|++++||
T Consensus 76 ~~~~D~ii~VvDa~~l~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~L------------g~pvi~~sa 143 (156)
T PF02421_consen 76 SEKPDLIIVVVDATNLERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSERL------------GVPVIPVSA 143 (156)
T ss_dssp HTSSSEEEEEEEGGGHHHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHH------------TS-EEEEBT
T ss_pred hcCCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHHHh------------CCCEEEEEe
Confidence 579999999999986 44567999999999999987655443334333221 789999999
Q ss_pred CCCCCHHHHHHHH
Q 007334 475 LEGRGRIAVMHQV 487 (607)
Q Consensus 475 ~~g~gv~~l~~~i 487 (607)
++|+|+++|+++|
T Consensus 144 ~~~~g~~~L~~~I 156 (156)
T PF02421_consen 144 RTGEGIDELKDAI 156 (156)
T ss_dssp TTTBTHHHHHHHH
T ss_pred CCCcCHHHHHhhC
Confidence 9999999998875
No 13
>COG1159 Era GTPase [General function prediction only]
Probab=99.93 E-value=1.6e-25 Score=219.38 Aligned_cols=167 Identities=26% Similarity=0.376 Sum_probs=141.9
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANV 200 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 200 (607)
-.|+|||+||||||||+|+|+|.+.+++++.+. |||....+.+..++.++.++||||+... ...+...+.+.....
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~Q--TTR~~I~GI~t~~~~QiIfvDTPGih~p--k~~l~~~m~~~a~~s 82 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQ--TTRNRIRGIVTTDNAQIIFVDTPGIHKP--KHALGELMNKAARSA 82 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhcCceEeecCCcc--hhhhheeEEEEcCCceEEEEeCCCCCCc--chHHHHHHHHHHHHH
Confidence 469999999999999999999999999999998 9999999999999999999999999843 334444566777889
Q ss_pred hhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCCh
Q 007334 201 LAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGM 280 (607)
Q Consensus 201 ~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi 280 (607)
+.++|+++||+|+.++....+..+.+.|++. +.|+++++||+|..++................+.+++++||++|.|+
T Consensus 83 l~dvDlilfvvd~~~~~~~~d~~il~~lk~~--~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~ 160 (298)
T COG1159 83 LKDVDLILFVVDADEGWGPGDEFILEQLKKT--KTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNV 160 (298)
T ss_pred hccCcEEEEEEeccccCCccHHHHHHHHhhc--CCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCCH
Confidence 9999999999999999999998888888874 68999999999998865422222223334456778999999999999
Q ss_pred HHHHHHhccchHH
Q 007334 281 TELYEALRPSVED 293 (607)
Q Consensus 281 ~eL~~~i~~~l~~ 293 (607)
+.|.+.+.+.+++
T Consensus 161 ~~L~~~i~~~Lpe 173 (298)
T COG1159 161 DTLLEIIKEYLPE 173 (298)
T ss_pred HHHHHHHHHhCCC
Confidence 9999999988865
No 14
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.92 E-value=1.6e-24 Score=224.30 Aligned_cols=154 Identities=34% Similarity=0.469 Sum_probs=131.8
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
.+++++++|+||||||||+|+|++.++++|+++||||||.+...+..+|.++.|+||||+++. ....|...+.+++..
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet--~d~VE~iGIeRs~~~ 293 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRET--DDVVERIGIERAKKA 293 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccC--ccHHHHHHHHHHHHH
Confidence 479999999999999999999999999999999999999999999999999999999999854 445788999999999
Q ss_pred HhhccEEEEEeccchh---------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcc
Q 007334 403 LMRAHVVALVLDAEEV---------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTS 473 (607)
Q Consensus 403 i~~ad~~llViD~~~~---------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iS 473 (607)
+..||++++|+|++.+ .....++|+++|.||+||....... .+ ....+.+++.+|
T Consensus 294 i~~ADlvL~v~D~~~~~~~~d~~~~~~~~~~~~~i~v~NK~DL~~~~~~~------------~~----~~~~~~~~i~iS 357 (454)
T COG0486 294 IEEADLVLFVLDASQPLDKEDLALIELLPKKKPIIVVLNKADLVSKIELE------------SE----KLANGDAIISIS 357 (454)
T ss_pred HHhCCEEEEEEeCCCCCchhhHHHHHhcccCCCEEEEEechhcccccccc------------hh----hccCCCceEEEE
Confidence 9999999999999984 2134578999999999998763211 00 112245799999
Q ss_pred cCCCCCHHHHHHHHHHHHHHH
Q 007334 474 ALEGRGRIAVMHQVIDTYQKW 494 (607)
Q Consensus 474 A~~g~gv~~l~~~i~~~~~~~ 494 (607)
|++|+|++.|.++|.+.+...
T Consensus 358 a~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 358 AKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred ecCccCHHHHHHHHHHHHhhc
Confidence 999999999999998877644
No 15
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.92 E-value=3.5e-24 Score=195.88 Aligned_cols=153 Identities=30% Similarity=0.432 Sum_probs=116.4
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHh
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVL 201 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 201 (607)
+|+++|.||||||||||+|+|.+ +.++++|| +|.+...+.+.+.+..+.++||||..+-.+... ....+..++
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~-~~v~n~pG--~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~----ee~v~~~~l 74 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAK-QKVGNWPG--TTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSE----EERVARDYL 74 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS-EEEEESTT--SSSEEEEEEEEETTEEEEEEE----SSSSSSSH----HHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-ceecCCCC--CCeeeeeEEEEecCceEEEEECCCcccCCCCCc----HHHHHHHHH
Confidence 69999999999999999999988 56899999 999999999999999999999999875443221 112333343
Q ss_pred --hccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCC
Q 007334 202 --AKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLG 279 (607)
Q Consensus 202 --~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~g 279 (607)
...|++++|+|+++ ...+..+..++.+. ++|+++|+||+|.......... .......+|. +++++||++|+|
T Consensus 75 ~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~--g~P~vvvlN~~D~a~~~g~~id-~~~Ls~~Lg~-pvi~~sa~~~~g 148 (156)
T PF02421_consen 75 LSEKPDLIIVVVDATN--LERNLYLTLQLLEL--GIPVVVVLNKMDEAERKGIEID-AEKLSERLGV-PVIPVSARTGEG 148 (156)
T ss_dssp HHTSSSEEEEEEEGGG--HHHHHHHHHHHHHT--TSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS--EEEEBTTTTBT
T ss_pred hhcCCCEEEEECCCCC--HHHHHHHHHHHHHc--CCCEEEEEeCHHHHHHcCCEEC-HHHHHHHhCC-CEEEEEeCCCcC
Confidence 68999999999986 34455677777777 8999999999999876543322 2223344677 899999999999
Q ss_pred hHHHHHHh
Q 007334 280 MTELYEAL 287 (607)
Q Consensus 280 i~eL~~~i 287 (607)
+++|+++|
T Consensus 149 ~~~L~~~I 156 (156)
T PF02421_consen 149 IDELKDAI 156 (156)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhC
Confidence 99999875
No 16
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.92 E-value=5.3e-25 Score=237.57 Aligned_cols=224 Identities=22% Similarity=0.264 Sum_probs=167.7
Q ss_pred hhhccccchhhhhhhhhcccccccccccc-cccc--------cCccCCCCCCCCCCccccccccccccCCccccccc---
Q 007334 49 RASAAGSLYQVGSSLKCNLLPEVPRGFCG-VVQN--------EALEDTHVEPEPDGVVEDHKVKPLYEKPVDFTKID--- 116 (607)
Q Consensus 49 ~~~~~~~~~qv~la~l~~~~~~~~~~~~~-~~~~--------~g~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--- 116 (607)
.|.+..+ +|++++++.+.+++....|.+ +.+. .-+++...+.+++.+ ..++..+++++.++....
T Consensus 133 ~a~t~~~-~~~al~~l~G~l~~~~~~~r~~l~~~~a~iea~iDf~ee~~~~~~~~~i--~~~i~~l~~~l~~l~~~~~~~ 209 (449)
T PRK05291 133 DAKTEAA-ARLALRQLQGALSKLINELREELLELLALVEAAIDFPEEDIEFLSDEKI--LEKLEELIAELEALLASARQG 209 (449)
T ss_pred hCCCHHH-HHHHHHhcCcHHHHHHHHHHHHHHHHHHHheEEccCCCCCcccccHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 3444443 999999999999988777755 4333 335555556666667 777888888777644311
Q ss_pred --ccCCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHH
Q 007334 117 --INLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTA 194 (607)
Q Consensus 117 --~~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~ 194 (607)
....++|+++|+||||||||+|+|++.+.+++++.++ +|+|.....+.+++..+.+|||||+.. +.+.......
T Consensus 210 ~~~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~g--tT~d~~~~~i~~~g~~i~l~DT~G~~~--~~~~ie~~gi 285 (449)
T PRK05291 210 EILREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAG--TTRDVIEEHINLDGIPLRLIDTAGIRE--TDDEVEKIGI 285 (449)
T ss_pred HHhhcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCC--cccccEEEEEEECCeEEEEEeCCCCCC--CccHHHHHHH
Confidence 1234799999999999999999999988778888888 999999999999999999999999973 2222222234
Q ss_pred HHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeec
Q 007334 195 GMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISA 274 (607)
Q Consensus 195 ~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA 274 (607)
..+..++..+|++++|+|++++.+..+..+.. . ..++|+++|+||+|+....... ...+ .+++++||
T Consensus 286 ~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~---~-~~~~piiiV~NK~DL~~~~~~~--------~~~~-~~~i~iSA 352 (449)
T PRK05291 286 ERSREAIEEADLVLLVLDASEPLTEEDDEILE---E-LKDKPVIVVLNKADLTGEIDLE--------EENG-KPVIRISA 352 (449)
T ss_pred HHHHHHHHhCCEEEEEecCCCCCChhHHHHHH---h-cCCCCcEEEEEhhhccccchhh--------hccC-CceEEEEe
Confidence 55778899999999999999988776544322 2 3478999999999997542211 1122 36799999
Q ss_pred CCCCChHHHHHHhccchH
Q 007334 275 ETGLGMTELYEALRPSVE 292 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~~l~ 292 (607)
++|.|+++|+++|.+.+.
T Consensus 353 ktg~GI~~L~~~L~~~l~ 370 (449)
T PRK05291 353 KTGEGIDELREAIKELAF 370 (449)
T ss_pred eCCCCHHHHHHHHHHHHh
Confidence 999999999999987664
No 17
>COG1159 Era GTPase [General function prediction only]
Probab=99.91 E-value=1e-23 Score=206.74 Aligned_cols=165 Identities=26% Similarity=0.363 Sum_probs=130.9
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHh
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLM 404 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~ 404 (607)
--|+++|+||||||||+|+|+|+..+++++.|.|||..+.+.+..++.++.++||||+...+ .....+....+..++.
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk--~~l~~~m~~~a~~sl~ 84 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPK--HALGELMNKAARSALK 84 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcc--hHHHHHHHHHHHHHhc
Confidence 46999999999999999999999999999999999999999999999999999999997763 2345677778889999
Q ss_pred hccEEEEEeccchh---------hHHh-cCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEccc
Q 007334 405 RAHVVALVLDAEEV---------RAVE-EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSA 474 (607)
Q Consensus 405 ~ad~~llViD~~~~---------~~~~-~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA 474 (607)
.+|++++|+|+++. ..+. .+.|+++++||+|..+.... . .. +........ .+..++++||
T Consensus 85 dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~--l-~~----~~~~~~~~~---~f~~ivpiSA 154 (298)
T COG1159 85 DVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTV--L-LK----LIAFLKKLL---PFKEIVPISA 154 (298)
T ss_pred cCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHHH--H-HH----HHHHHHhhC---CcceEEEeec
Confidence 99999999999985 2222 25799999999999876431 0 11 111222222 2448999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCChH
Q 007334 475 LEGRGRIAVMHQVIDTYQKWCLRLPTS 501 (607)
Q Consensus 475 ~~g~gv~~l~~~i~~~~~~~~~~~~~~ 501 (607)
++|.|++.|.+.+...+.+.....|.+
T Consensus 155 ~~g~n~~~L~~~i~~~Lpeg~~~yp~d 181 (298)
T COG1159 155 LKGDNVDTLLEIIKEYLPEGPWYYPED 181 (298)
T ss_pred cccCCHHHHHHHHHHhCCCCCCcCChh
Confidence 999999999999988776554444433
No 18
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.90 E-value=2.5e-23 Score=215.50 Aligned_cols=161 Identities=29% Similarity=0.388 Sum_probs=132.9
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
-.+|+|+|.||||||||+|+|++.+.++|++.|| ||||.....+.++|+++.++||+|+... .+.......+....
T Consensus 217 G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~G--TTRDviee~i~i~G~pv~l~DTAGiRet--~d~VE~iGIeRs~~ 292 (454)
T COG0486 217 GLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAG--TTRDVIEEDINLNGIPVRLVDTAGIRET--DDVVERIGIERAKK 292 (454)
T ss_pred CceEEEECCCCCcHHHHHHHHhcCCceEecCCCC--CccceEEEEEEECCEEEEEEecCCcccC--ccHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999 9999999999999999999999999833 23344455677888
Q ss_pred HhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLG 279 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~g 279 (607)
.+++||+|++|+|++.+.+..+..+.. ....++|+++|+||+|+......... ....+. ..+.+||++|+|
T Consensus 293 ~i~~ADlvL~v~D~~~~~~~~d~~~~~---~~~~~~~~i~v~NK~DL~~~~~~~~~-----~~~~~~-~~i~iSa~t~~G 363 (454)
T COG0486 293 AIEEADLVLFVLDASQPLDKEDLALIE---LLPKKKPIIVVLNKADLVSKIELESE-----KLANGD-AIISISAKTGEG 363 (454)
T ss_pred HHHhCCEEEEEEeCCCCCchhhHHHHH---hcccCCCEEEEEechhcccccccchh-----hccCCC-ceEEEEecCccC
Confidence 999999999999999988888866666 22347899999999999875431111 111222 579999999999
Q ss_pred hHHHHHHhccchHH
Q 007334 280 MTELYEALRPSVED 293 (607)
Q Consensus 280 i~eL~~~i~~~l~~ 293 (607)
+++|.+.|.+.+..
T Consensus 364 l~~L~~~i~~~~~~ 377 (454)
T COG0486 364 LDALREAIKQLFGK 377 (454)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999887754
No 19
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.90 E-value=3.9e-23 Score=209.60 Aligned_cols=164 Identities=21% Similarity=0.256 Sum_probs=125.2
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHh
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVL 201 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 201 (607)
.|+++|+||||||||+|+|++.+.+++++.++ ||++...+....++.++.+|||||+.... ......+...+..++
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~--TTr~~i~~i~~~~~~qii~vDTPG~~~~~--~~l~~~~~~~~~~~l 77 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQ--TTRNRISGIHTTGASQIIFIDTPGFHEKK--HSLNRLMMKEARSAI 77 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCC--cccCcEEEEEEcCCcEEEEEECcCCCCCc--chHHHHHHHHHHHHH
Confidence 69999999999999999999999888888888 99988777766677789999999997431 122223445567788
Q ss_pred hccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCChH
Q 007334 202 AKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMT 281 (607)
Q Consensus 202 ~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi~ 281 (607)
..+|++++|+|++++.+.. ..+.+.+... +.|+++|+||+|+..... ............++.+++++||++|.|++
T Consensus 78 ~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~--~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~ 153 (270)
T TIGR00436 78 GGVDLILFVVDSDQWNGDG-EFVLTKLQNL--KRPVVLTRNKLDNKFKDK-LLPLIDKYAILEDFKDIVPISALTGDNTS 153 (270)
T ss_pred hhCCEEEEEEECCCCCchH-HHHHHHHHhc--CCCEEEEEECeeCCCHHH-HHHHHHHHHhhcCCCceEEEecCCCCCHH
Confidence 9999999999999876554 4566666654 789999999999974321 11111122222345578999999999999
Q ss_pred HHHHHhccchHH
Q 007334 282 ELYEALRPSVED 293 (607)
Q Consensus 282 eL~~~i~~~l~~ 293 (607)
+|++.|.+.+++
T Consensus 154 ~L~~~l~~~l~~ 165 (270)
T TIGR00436 154 FLAAFIEVHLPE 165 (270)
T ss_pred HHHHHHHHhCCC
Confidence 999999887754
No 20
>PF14714 KH_dom-like: KH-domain-like of EngA bacterial GTPase enzymes, C-terminal; PDB: 2HJG_A 1MKY_A.
Probab=99.89 E-value=2.5e-23 Score=167.93 Aligned_cols=80 Identities=43% Similarity=0.720 Sum_probs=64.3
Q ss_pred CCChHHHHHHHHHHHHhCCCCCCCCcCcEEEEeecCCCCCEEEEEecCCCCCCHHHHHHHHHHhHhhCCCCceeEEEEEe
Q 007334 497 RLPTSRLNRWLRKVMGRHSWKDQSAQPKIKYFTQVKARPPTFVAFLSGKKTLSDAELRFLTKSLKEDFDLGGIPIRITQR 576 (607)
Q Consensus 497 ~~~~~~l~~~l~~~~~~~~~~~~~~~~ki~~~~q~~~~pp~f~~~~n~~~~l~~~y~r~l~~~~~~~~~~~g~pi~~~~~ 576 (607)
+++|+.||+||++++..+++|..|+.+|++|++|++.+||||++|||+++.++++|+|||+|+||++|||.|+||+|.||
T Consensus 1 Ri~T~~LN~~l~~~~~~~~pp~~g~~~Ki~Y~tQv~~~PPtFv~f~N~~~~~~~sY~ryL~n~lRe~f~f~G~Pi~l~~R 80 (80)
T PF14714_consen 1 RISTSELNRFLQKALERHPPPSKGKRLKIYYATQVGTRPPTFVLFVNDPELLPESYKRYLENQLREAFGFEGVPIRLIFR 80 (80)
T ss_dssp ---HHHHHHHHHHHHCCS--SETTCC--EEEEEEEETTTTEEEEEES-CCC--HHHHHHHHHHHHHHH--TTS--EEEEE
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCCceeEEEEEEeCCCCCCEEEEEeCCcccCCHHHHHHHHHHHHHHCCCCceeEEEEeC
Confidence 57999999999999999988878899999999999999999999999999999999999999999999999999999986
No 21
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=2.1e-22 Score=184.53 Aligned_cols=161 Identities=19% Similarity=0.283 Sum_probs=134.4
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHH
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGM 196 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~ 196 (607)
.+++|.|+|.+|||||+|+.|+.+..+.. ....+...|+....+++.| .++++|||+|++ ++...
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~~~f~e---~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQE----------RFrti 74 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKDDTFTE---SYISTIGVDFKIRTVELDGKTIKLQIWDTAGQE----------RFRTI 74 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhccCCcch---hhcceeeeEEEEEEeeecceEEEEEeeeccccH----------HHhhh
Confidence 36899999999999999999999877532 2233466788888887766 479999999998 88999
Q ss_pred HHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhh----CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEe
Q 007334 197 TANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH----APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAI 272 (607)
Q Consensus 197 ~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~----~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~i 272 (607)
+..|++.||+||+|+|++...++.. +..|+.+. ..+.|.++|+||||+...+.++.++....+..++...++++
T Consensus 75 t~syYR~ahGii~vyDiT~~~SF~~--v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ET 152 (205)
T KOG0084|consen 75 TSSYYRGAHGIIFVYDITKQESFNN--VKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLET 152 (205)
T ss_pred hHhhccCCCeEEEEEEcccHHHhhh--HHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeec
Confidence 9999999999999999999877776 55666553 34679999999999999888888887777888888558999
Q ss_pred ecCCCCChHHHHHHhccchHHH
Q 007334 273 SAETGLGMTELYEALRPSVEDY 294 (607)
Q Consensus 273 SA~~g~gi~eL~~~i~~~l~~~ 294 (607)
||+++.++++.|..|...+...
T Consensus 153 SAK~~~NVe~~F~~la~~lk~~ 174 (205)
T KOG0084|consen 153 SAKDSTNVEDAFLTLAKELKQR 174 (205)
T ss_pred ccCCccCHHHHHHHHHHHHHHh
Confidence 9999999999999988776553
No 22
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.89 E-value=2.3e-22 Score=187.16 Aligned_cols=156 Identities=23% Similarity=0.285 Sum_probs=116.3
Q ss_pred HHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCC
Q 007334 197 TANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAET 276 (607)
Q Consensus 197 ~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~ 276 (607)
+...++++|++++|+|++++....+..+.+.+.....++|+|+|+||+|+.+... .......+........+++||++
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~--~~~~~~~~~~~~~~~~~~iSa~~ 79 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWV--TARWVKILSKEYPTIAFHASINN 79 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHH--HHHHHHHHhcCCcEEEEEeeccc
Confidence 3567889999999999999877777778888876544589999999999975321 11222222222111247899999
Q ss_pred CCChHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhcCCceeecCCC
Q 007334 277 GLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEA 356 (607)
Q Consensus 277 g~gi~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~ 356 (607)
|.|+++|++.|.+.+... .....++|+++|.||||||||+|+|.+.....+++++
T Consensus 80 ~~~~~~L~~~l~~~~~~~-------------------------~~~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~ 134 (157)
T cd01858 80 PFGKGSLIQLLRQFSKLH-------------------------SDKKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIP 134 (157)
T ss_pred cccHHHHHHHHHHHHhhh-------------------------ccccceEEEEEeCCCCChHHHHHHHhcCCceeeCCCC
Confidence 999999999987643210 0012468999999999999999999999889999999
Q ss_pred CceeeeEEEEEEEcCeEEEEEecCCC
Q 007334 357 GLTRDSVRVHFEYQGRTVYLVDTAGW 382 (607)
Q Consensus 357 gtT~~~~~~~~~~~~~~~~liDTpG~ 382 (607)
|+|++..... .+..+.|+||||+
T Consensus 135 g~T~~~~~~~---~~~~~~liDtPGi 157 (157)
T cd01858 135 GETKVWQYIT---LMKRIYLIDCPGV 157 (157)
T ss_pred CeeEeEEEEE---cCCCEEEEECcCC
Confidence 9999865432 2345899999995
No 23
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.89 E-value=1.8e-22 Score=204.81 Aligned_cols=155 Identities=24% Similarity=0.317 Sum_probs=116.9
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhh
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMR 405 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ 405 (607)
+|+++|+||||||||+|+|+|.+.+.+++.++||++.+.+....++.++.+|||||+.+... .........+..++..
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~--~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKH--SLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcc--hHHHHHHHHHHHHHhh
Confidence 68999999999999999999998888999999999988877777778899999999865421 1122233456678889
Q ss_pred ccEEEEEeccchh---------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCC
Q 007334 406 AHVVALVLDAEEV---------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALE 476 (607)
Q Consensus 406 ad~~llViD~~~~---------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~ 476 (607)
+|++++|+|+++. .....++|+++|+||+|+..... ..+.. ...... ....+++++||++
T Consensus 80 aDvvl~VvD~~~~~~~~~~i~~~l~~~~~p~ilV~NK~Dl~~~~~---~~~~~-----~~~~~~---~~~~~v~~iSA~~ 148 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDGEFVLTKLQNLKRPVVLTRNKLDNKFKDK---LLPLI-----DKYAIL---EDFKDIVPISALT 148 (270)
T ss_pred CCEEEEEEECCCCCchHHHHHHHHHhcCCCEEEEEECeeCCCHHH---HHHHH-----HHHHhh---cCCCceEEEecCC
Confidence 9999999999865 12235789999999999974321 11111 111111 1223799999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 007334 477 GRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 477 g~gv~~l~~~i~~~~~~ 493 (607)
|.|++++++.+.+.+..
T Consensus 149 g~gi~~L~~~l~~~l~~ 165 (270)
T TIGR00436 149 GDNTSFLAAFIEVHLPE 165 (270)
T ss_pred CCCHHHHHHHHHHhCCC
Confidence 99999999999887654
No 24
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.89 E-value=7.4e-22 Score=182.84 Aligned_cols=156 Identities=41% Similarity=0.668 Sum_probs=126.1
Q ss_pred EEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHhhc
Q 007334 124 MIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVLAK 203 (607)
Q Consensus 124 ~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 203 (607)
+++|.+|||||||+|+|++.+....+..++ +|++.........+..+.+|||||+....+ .....+...+...+..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~--~~~~~~~~~~~~~~~~ 76 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPG--VTRDRIYGEAEWGGREFILIDTGGIEPDDE--GISKEIREQAELAIEE 76 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCC--ceeCceeEEEEECCeEEEEEECCCCCCchh--HHHHHHHHHHHHHHHh
Confidence 589999999999999999987666666666 889888888888899999999999985433 2222344556677899
Q ss_pred cCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCChHHH
Q 007334 204 TQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTEL 283 (607)
Q Consensus 204 ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi~eL 283 (607)
+|++++|+|++++.+..+.++.++++.. +.|+++|+||+|+..... ....+..++..+++++||++|.|++++
T Consensus 77 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~--~~piiiv~nK~D~~~~~~-----~~~~~~~~~~~~~~~~Sa~~~~gv~~l 149 (157)
T cd01894 77 ADVILFVVDGREGLTPADEEIAKYLRKS--KKPVILVVNKVDNIKEED-----EAAEFYSLGFGEPIPISAEHGRGIGDL 149 (157)
T ss_pred CCEEEEEEeccccCCccHHHHHHHHHhc--CCCEEEEEECcccCChHH-----HHHHHHhcCCCCeEEEecccCCCHHHH
Confidence 9999999999988877777788888776 689999999999976422 133445566667899999999999999
Q ss_pred HHHhccc
Q 007334 284 YEALRPS 290 (607)
Q Consensus 284 ~~~i~~~ 290 (607)
+++|.+.
T Consensus 150 ~~~l~~~ 156 (157)
T cd01894 150 LDAILEL 156 (157)
T ss_pred HHHHHhh
Confidence 9998754
No 25
>PRK15494 era GTPase Era; Provisional
Probab=99.88 E-value=1.1e-21 Score=204.52 Aligned_cols=165 Identities=26% Similarity=0.314 Sum_probs=128.3
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
..+|+++|+||||||||+|+|++.+.+.++..++ +|++...+.+..++.++.+|||||+.... ..+...+......
T Consensus 52 ~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~--tTr~~~~~~~~~~~~qi~~~DTpG~~~~~--~~l~~~~~r~~~~ 127 (339)
T PRK15494 52 TVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQ--TTRSIITGIITLKDTQVILYDTPGIFEPK--GSLEKAMVRCAWS 127 (339)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCC--CccCcEEEEEEeCCeEEEEEECCCcCCCc--ccHHHHHHHHHHH
Confidence 4689999999999999999999998888877777 89998888888889999999999996322 1232344555666
Q ss_pred HhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcC-CCCcEEeecCCCC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLG-FGDPIAISAETGL 278 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~-~~~~i~iSA~~g~ 278 (607)
++..||++++|+|++++....+..+.+.++.. +.|.|+|+||+|+... ........+.... +..++++||++|.
T Consensus 128 ~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~--~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAktg~ 202 (339)
T PRK15494 128 SLHSADLVLLIIDSLKSFDDITHNILDKLRSL--NIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISALSGK 202 (339)
T ss_pred HhhhCCEEEEEEECCCCCCHHHHHHHHHHHhc--CCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEeccCcc
Confidence 78999999999999887777766677777665 5788999999998643 1222333333332 3468999999999
Q ss_pred ChHHHHHHhccchHH
Q 007334 279 GMTELYEALRPSVED 293 (607)
Q Consensus 279 gi~eL~~~i~~~l~~ 293 (607)
|+++|+++|.+.+++
T Consensus 203 gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 203 NIDGLLEYITSKAKI 217 (339)
T ss_pred CHHHHHHHHHHhCCC
Confidence 999999999887654
No 26
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.88 E-value=1.2e-23 Score=215.92 Aligned_cols=277 Identities=15% Similarity=0.156 Sum_probs=179.0
Q ss_pred hhhhHHhhhhhcccccccccccccc-------CCCCCCCCCcchhhhhhhhhhhhhccccchhhhhhhhh-----ccccc
Q 007334 3 HSWVRAVLARKSSLGFGLFGRSISS-------STNPVNLCKPFNFTLNNYSHIRASAAGSLYQVGSSLKC-----NLLPE 70 (607)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~qv~la~l~-----~~~~~ 70 (607)
-++||+|||||++|++.+|-..... -....|+..++..+|++..|++-. +.||..|+-. ....+
T Consensus 40 i~riR~fy~rkvk~~~~~~~~kL~~il~~FP~~~~ihPfy~dL~~~ly~~dhYk~a----Lgqv~~ak~lv~~vakdyvr 115 (620)
T KOG1490|consen 40 ISRIRQFYARKVKFTQTTLTEKLDDILQEFPKLNDIHPFYADLLNILYDRDHYKIA----LGQVSTAKHLVENVARDYVR 115 (620)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcchHHHHHHHhcccHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 3799999999999999998765443 222226666667888888888763 3444433311 00001
Q ss_pred ccccccccccc-------cCccCCCCCCCCCCccccccccccccCCcccccccccCCCEEEEecCCCCchhHHHHHhhcc
Q 007334 71 VPRGFCGVVQN-------EALEDTHVEPEPDGVVEDHKVKPLYEKPVDFTKIDINLLPTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 71 ~~~~~~~~~~~-------~g~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
+-.-...+.+- -|.+.+.+......+ ..+.++++++..+.....+ .++++|+|+|||||||++|.++..
T Consensus 116 Llk~~dSlyrck~lk~aAlgrm~tv~k~q~~sl---~yLeqVrqhl~rlPsIDp~-trTlllcG~PNVGKSSf~~~vtra 191 (620)
T KOG1490|consen 116 LLKYGDSLYRCKQLKRAALGRMATIIKRQKSSL---EYLEQVRQHLSRLPAIDPN-TRTLLVCGYPNVGKSSFNNKVTRA 191 (620)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHHHHhcchH---HHHHHHHHHHhcCCCCCCC-cCeEEEecCCCCCcHhhccccccc
Confidence 10011111110 222223222222233 3445555555555544443 589999999999999999999877
Q ss_pred ceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHhh-ccCEEEEEEecCC--CCCHh
Q 007334 144 REALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVLA-KTQFAIFMIDVRS--GLHPL 220 (607)
Q Consensus 144 ~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~-~ad~vl~VvD~s~--~~~~~ 220 (607)
+ +...|..+||+....+++++.-..|+++||||+.+....+.-.-++. .+.++. --.+|+|++|.|. |.+..
T Consensus 192 d---vevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmq--sITALAHLraaVLYfmDLSe~CGySva 266 (620)
T KOG1490|consen 192 D---DEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQ--IITALAHLRSAVLYFMDLSEMCGYSVA 266 (620)
T ss_pred c---cccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHH--HHHHHHHhhhhheeeeechhhhCCCHH
Confidence 6 34455666999999999999999999999999985432221111222 222222 2246899999987 45554
Q ss_pred H-HHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHH--HHHHHHHhcCCCCcEEeecCCCCChHHHHHHhccchH
Q 007334 221 D-LEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLA--GAAAESLMLGFGDPIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 221 ~-~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~--~~~~~~~~~~~~~~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
+ ..++..++.++.++|+|+|+||||.........+ +.......-+-.+++.+|+.+.+|+.++...-++.+-
T Consensus 267 ~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~~eegVm~Vrt~ACe~LL 341 (620)
T KOG1490|consen 267 AQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSCVQEEGVMDVRTTACEALL 341 (620)
T ss_pred HHHHHHHHhHHHhcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEecccchhceeeHHHHHHHHHH
Confidence 4 4577888888889999999999999986554332 2334444444337899999999999999887776553
No 27
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.88 E-value=2e-21 Score=201.14 Aligned_cols=172 Identities=26% Similarity=0.331 Sum_probs=125.0
Q ss_pred ccccCCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee-CCeeEEEecCCCCccccCchhHHHHH
Q 007334 115 IDINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL-GDLRFKVLDSAGLETEATSGSILDRT 193 (607)
Q Consensus 115 ~~~~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~ 193 (607)
+..+.++.|+|||+||||||||+|+|++.+.. ++++|+ ||++...+.+.+ ++.++.+|||||+........ ..
T Consensus 153 lelk~~adVglVG~PNaGKSTLln~ls~a~~~-va~ypf--TT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~---gL 226 (335)
T PRK12299 153 LELKLLADVGLVGLPNAGKSTLISAVSAAKPK-IADYPF--TTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGA---GL 226 (335)
T ss_pred EEEcccCCEEEEcCCCCCHHHHHHHHHcCCCc-cCCCCC--ceeCceEEEEEeCCCcEEEEEeCCCccCCCCccc---cH
Confidence 34455789999999999999999999987644 677887 999999999888 567899999999985433211 12
Q ss_pred HHHHHHHhhccCEEEEEEecCCCCCHhHHH-HHHHHHhhC---CCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCc
Q 007334 194 AGMTANVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKHA---PQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDP 269 (607)
Q Consensus 194 ~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~~---~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~ 269 (607)
....+.+++.++++++|+|+++..+.++.. +.+.|.... .++|+++|+||+|+..................+. ++
T Consensus 227 g~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~-~i 305 (335)
T PRK12299 227 GHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGG-PV 305 (335)
T ss_pred HHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCC-CE
Confidence 234456788999999999999765544432 444444321 3689999999999976432211112222233343 78
Q ss_pred EEeecCCCCChHHHHHHhccchHH
Q 007334 270 IAISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 270 i~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
+++||++++|+++|+++|.+.+.+
T Consensus 306 ~~iSAktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 306 FLISAVTGEGLDELLRALWELLEE 329 (335)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999887653
No 28
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.87 E-value=2.9e-22 Score=194.93 Aligned_cols=191 Identities=24% Similarity=0.281 Sum_probs=130.8
Q ss_pred CCCCCCCCCccccccccccccCCccccc--------ccccCCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceee
Q 007334 87 THVEPEPDGVVEDHKVKPLYEKPVDFTK--------IDINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTR 158 (607)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~ 158 (607)
++++.+.+.+ +.|++.+++++..+.+ +..+..++|+|+|++|||||||+|+|++... .+.+.++ .|.
T Consensus 2 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~iiG~~g~GKStLl~~l~~~~~-~~~~~~~--~t~ 76 (204)
T cd01878 2 TQLETDRRLI--RERIAKLRRELEKVKKQRELQRRRRKRSGIPTVALVGYTNAGKSTLFNALTGADV-YAEDQLF--ATL 76 (204)
T ss_pred chHHHHHHHH--HHHHHHHHHHHHHHHHhHHHHHHhhhhcCCCeEEEECCCCCCHHHHHHHHhcchh-ccCCccc--eec
Confidence 4455555556 6666666665553332 1124568999999999999999999999763 2334444 666
Q ss_pred eeEEEEeeeCCe-eEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCC
Q 007334 159 DIREGLAKLGDL-RFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQI 235 (607)
Q Consensus 159 ~~~~~~~~~~~~-~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~ 235 (607)
+.....+.+.+. .+.+|||||+....+. ... ..+..+...+..+|++++|+|++++.+..+. .+.+++... ..++
T Consensus 77 ~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-~~~-~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~ 154 (204)
T cd01878 77 DPTTRRLRLPDGREVLLTDTVGFIRDLPH-QLV-EAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDI 154 (204)
T ss_pred cceeEEEEecCCceEEEeCCCccccCCCH-HHH-HHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCC
Confidence 666666666554 8999999999644332 222 2233445567899999999999988766653 345566554 2368
Q ss_pred cEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCChHHHHHHhccc
Q 007334 236 KPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPS 290 (607)
Q Consensus 236 p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi~eL~~~i~~~ 290 (607)
|+++|+||+|+...... ..... ....+++++||++|.|++++++.|...
T Consensus 155 ~viiV~NK~Dl~~~~~~-----~~~~~-~~~~~~~~~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 155 PMILVLNKIDLLDDEEL-----EERLE-AGRPDAVFISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred CEEEEEEccccCChHHH-----HHHhh-cCCCceEEEEcCCCCCHHHHHHHHHhh
Confidence 99999999999764221 12222 233478999999999999999988754
No 29
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=2.6e-21 Score=180.21 Aligned_cols=163 Identities=20% Similarity=0.234 Sum_probs=137.9
Q ss_pred ccCCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCe--eEEEecCCCCccccCchhHHHHHH
Q 007334 117 INLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDL--RFKVLDSAGLETEATSGSILDRTA 194 (607)
Q Consensus 117 ~~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~ 194 (607)
.+...+|++||.+|||||+|+-++....+... ...+...|.....+.+++. .+++|||+|++ ++.
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~---~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQe----------rf~ 75 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTS---FISTIGIDFKIKTIELDGKKIKLQIWDTAGQE----------RFR 75 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhhhccCcCC---ccceEEEEEEEEEEEeCCeEEEEEEEEcccch----------hHH
Confidence 34468999999999999999999998765322 2233667787777777764 68999999999 899
Q ss_pred HHHHHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhhCC-CCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEe
Q 007334 195 GMTANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKHAP-QIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAI 272 (607)
Q Consensus 195 ~~~~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~~~-~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~i 272 (607)
.++..|++.|+++++|||+++..+.++. .|.+++.+..+ +.|.++|+||+|+...+.+..+.....+..+|. .++++
T Consensus 76 ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~-~F~Et 154 (207)
T KOG0078|consen 76 TITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGI-KFFET 154 (207)
T ss_pred HHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCC-eEEEc
Confidence 9999999999999999999998888873 36677777644 789999999999999888888888888888898 89999
Q ss_pred ecCCCCChHHHHHHhccchHH
Q 007334 273 SAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 273 SA~~g~gi~eL~~~i~~~l~~ 293 (607)
||++|.||++.|-.+.+.+..
T Consensus 155 SAk~~~NI~eaF~~La~~i~~ 175 (207)
T KOG0078|consen 155 SAKTNFNIEEAFLSLARDILQ 175 (207)
T ss_pred cccCCCCHHHHHHHHHHHHHh
Confidence 999999999999999877754
No 30
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=2.2e-21 Score=175.43 Aligned_cols=160 Identities=19% Similarity=0.212 Sum_probs=133.9
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHH
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGM 196 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~ 196 (607)
..+++.++|.+|||||+|+.+++.+++..+.+. +...+.....+.+++ .++++|||+|++ .+.+.
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~---TiGvefg~r~~~id~k~IKlqiwDtaGqe----------~frsv 71 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDL---TIGVEFGARMVTIDGKQIKLQIWDTAGQE----------SFRSV 71 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCccccccc---eeeeeeceeEEEEcCceEEEEEEecCCcH----------HHHHH
Confidence 357899999999999999999999987655542 255666666666655 579999999999 78889
Q ss_pred HHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhh----CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEe
Q 007334 197 TANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH----APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAI 272 (607)
Q Consensus 197 ~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~----~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~i 272 (607)
+.+|++.|.++|+|+|++...++.. +..||.+. .+++.+++++||+|+...+.+..++..+.+.+.|+ .++++
T Consensus 72 ~~syYr~a~GalLVydit~r~sF~h--L~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgL-ifmET 148 (216)
T KOG0098|consen 72 TRSYYRGAAGALLVYDITRRESFNH--LTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGL-IFMET 148 (216)
T ss_pred HHHHhccCcceEEEEEccchhhHHH--HHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCc-eeehh
Confidence 9999999999999999998877775 44565443 46889999999999999998888988889999998 77899
Q ss_pred ecCCCCChHHHHHHhccchHHH
Q 007334 273 SAETGLGMTELYEALRPSVEDY 294 (607)
Q Consensus 273 SA~~g~gi~eL~~~i~~~l~~~ 294 (607)
||++++|++|.|..+...+-..
T Consensus 149 Sakt~~~VEEaF~nta~~Iy~~ 170 (216)
T KOG0098|consen 149 SAKTAENVEEAFINTAKEIYRK 170 (216)
T ss_pred hhhhhhhHHHHHHHHHHHHHHH
Confidence 9999999999998877666543
No 31
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.87 E-value=4.9e-21 Score=180.12 Aligned_cols=161 Identities=45% Similarity=0.699 Sum_probs=123.3
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCccccc-ccCcchhHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREK-EKGPASLSVMQSRKN 402 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~-~~~~~~~~~~~~~~~ 402 (607)
+++|+++|.+|+|||||+|+|++.......+.+++|++.....+..++..+.+|||||+.+... ....+.+....+..+
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 4789999999999999999999887677888999999998888888899999999999876521 223344555566677
Q ss_pred HhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEc
Q 007334 403 LMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFT 472 (607)
Q Consensus 403 i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i 472 (607)
+..+|++++|+|++++ .....++|+++++||+|+.+... ...+.+ ...+.+.+....+.+++++
T Consensus 82 ~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~ 155 (174)
T cd01895 82 IERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDS--KTMKEF----KKEIRRKLPFLDYAPIVFI 155 (174)
T ss_pred HhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccH--HHHHHH----HHHHHhhcccccCCceEEE
Confidence 8899999999999875 22335799999999999976521 111221 2233334444446789999
Q ss_pred ccCCCCCHHHHHHHHHHH
Q 007334 473 SALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 473 SA~~g~gv~~l~~~i~~~ 490 (607)
||++|.|++++++.+.+.
T Consensus 156 Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 156 SALTGQGVDKLFDAIDEV 173 (174)
T ss_pred eccCCCCHHHHHHHHHHh
Confidence 999999999999988764
No 32
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.87 E-value=3.2e-21 Score=181.16 Aligned_cols=163 Identities=25% Similarity=0.244 Sum_probs=111.8
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANV 200 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 200 (607)
|+|+++|++|||||||+|+|++.... +...++ +|.+...+.....+.++.+|||||+......... .+.......
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~-~~~~~~--~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~--~~~~~~~~~ 75 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPE-VAPYPF--TTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERN--TIEMQAITA 75 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCc-cCCCCC--cccceeEEEEccCceEEEEEECCCcCCccccCCc--hHHHHHHHH
Confidence 68999999999999999999987653 333455 7888887777777889999999999632111110 111111222
Q ss_pred -hhccCEEEEEEecCCCCCH--hH-HHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCC
Q 007334 201 -LAKTQFAIFMIDVRSGLHP--LD-LEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAET 276 (607)
Q Consensus 201 -~~~ad~vl~VvD~s~~~~~--~~-~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~ 276 (607)
...+|++++|+|+++..+. .+ .++...+++...+.|+++|+||+|+....... . ...+......+++++||++
T Consensus 76 ~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~--~-~~~~~~~~~~~~~~~Sa~~ 152 (168)
T cd01897 76 LAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLS--E-IEEEEELEGEEVLKISTLT 152 (168)
T ss_pred HHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHH--H-HHHhhhhccCceEEEEecc
Confidence 2346899999999876542 22 33555555444478999999999997643221 1 2222333334789999999
Q ss_pred CCChHHHHHHhccch
Q 007334 277 GLGMTELYEALRPSV 291 (607)
Q Consensus 277 g~gi~eL~~~i~~~l 291 (607)
|.|+++++++|.+.+
T Consensus 153 ~~gi~~l~~~l~~~~ 167 (168)
T cd01897 153 EEGVDEVKNKACELL 167 (168)
T ss_pred cCCHHHHHHHHHHHh
Confidence 999999999987654
No 33
>PRK00089 era GTPase Era; Reviewed
Probab=99.87 E-value=3.8e-21 Score=197.67 Aligned_cols=166 Identities=24% Similarity=0.376 Sum_probs=127.5
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANV 200 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 200 (607)
..|+|+|.||||||||+|+|++.+.+.++..+. +|++...+....++.++.+|||||+.... ......+...+...
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~--tt~~~i~~i~~~~~~qi~~iDTPG~~~~~--~~l~~~~~~~~~~~ 81 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQ--TTRHRIRGIVTEDDAQIIFVDTPGIHKPK--RALNRAMNKAAWSS 81 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCceeecCCCCC--cccccEEEEEEcCCceEEEEECCCCCCch--hHHHHHHHHHHHHH
Confidence 469999999999999999999999888888887 88888777666666899999999997432 12222344566678
Q ss_pred hhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHH-HhcCCCCcEEeecCCCCC
Q 007334 201 LAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAES-LMLGFGDPIAISAETGLG 279 (607)
Q Consensus 201 ~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~-~~~~~~~~i~iSA~~g~g 279 (607)
+..+|++++|+|++++.+..+..+.+.+... +.|+++|+||+|+...... .......+ ...++.+++++||++|.|
T Consensus 82 ~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~--~~pvilVlNKiDl~~~~~~-l~~~~~~l~~~~~~~~i~~iSA~~~~g 158 (292)
T PRK00089 82 LKDVDLVLFVVDADEKIGPGDEFILEKLKKV--KTPVILVLNKIDLVKDKEE-LLPLLEELSELMDFAEIVPISALKGDN 158 (292)
T ss_pred HhcCCEEEEEEeCCCCCChhHHHHHHHHhhc--CCCEEEEEECCcCCCCHHH-HHHHHHHHHhhCCCCeEEEecCCCCCC
Confidence 8999999999999997777776777777654 6899999999999843211 11122222 224556789999999999
Q ss_pred hHHHHHHhccchHH
Q 007334 280 MTELYEALRPSVED 293 (607)
Q Consensus 280 i~eL~~~i~~~l~~ 293 (607)
+++|++.|.+.+++
T Consensus 159 v~~L~~~L~~~l~~ 172 (292)
T PRK00089 159 VDELLDVIAKYLPE 172 (292)
T ss_pred HHHHHHHHHHhCCC
Confidence 99999999887753
No 34
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.86 E-value=8.2e-21 Score=176.91 Aligned_cols=171 Identities=23% Similarity=0.276 Sum_probs=133.8
Q ss_pred ccccccCCCEEEEecCCCCchhHHHHHhhccc-eeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHH
Q 007334 113 TKIDINLLPTVMIIGRPNVGKSALFNRLIRRR-EALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILD 191 (607)
Q Consensus 113 ~~~~~~~~~~V~ivG~~nvGKSSL~n~L~~~~-~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~ 191 (607)
...+.+..+.||++|++|||||||+|+|++.+ .+.++..|| .|+...+-.+. + .+.++|.||+....-+.....
T Consensus 17 ~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPG--rTq~iNff~~~--~-~~~lVDlPGYGyAkv~k~~~e 91 (200)
T COG0218 17 KQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPG--RTQLINFFEVD--D-ELRLVDLPGYGYAKVPKEVKE 91 (200)
T ss_pred hhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCC--ccceeEEEEec--C-cEEEEeCCCcccccCCHHHHH
Confidence 44566678999999999999999999999965 589999999 88888775544 2 389999999996655555666
Q ss_pred HHHHHHHHHhhc---cCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHH-HHHhcC--
Q 007334 192 RTAGMTANVLAK---TQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAA-ESLMLG-- 265 (607)
Q Consensus 192 ~~~~~~~~~~~~---ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~-~~~~~~-- 265 (607)
++...+.+|++. -.++++++|++++....|.++.+|+.+. ++|+++|+||+|..+.... ..... ....++
T Consensus 92 ~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~--~i~~~vv~tK~DKi~~~~~--~k~l~~v~~~l~~~ 167 (200)
T COG0218 92 KWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLEL--GIPVIVVLTKADKLKKSER--NKQLNKVAEELKKP 167 (200)
T ss_pred HHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHc--CCCeEEEEEccccCChhHH--HHHHHHHHHHhcCC
Confidence 777778888864 3488999999999999999999999998 8999999999999985321 11111 111222
Q ss_pred C-CC--cEEeecCCCCChHHHHHHhccchH
Q 007334 266 F-GD--PIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 266 ~-~~--~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
. .. ++..|+.++.|+++|.+.|.+.+.
T Consensus 168 ~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 168 PPDDQWVVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred CCccceEEEEecccccCHHHHHHHHHHHhh
Confidence 1 12 678999999999999999887654
No 35
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.86 E-value=5.3e-21 Score=178.58 Aligned_cols=155 Identities=17% Similarity=0.144 Sum_probs=109.4
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeecc--CCCCceeeeeEEEEeeeC-CeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYN--TPDDHVTRDIREGLAKLG-DLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~--~~~~~~T~~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.|+++|++|||||||+|+|++........ .++ +|.+..+....+. +..+.+|||||+. ++.....
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~DtpG~~----------~~~~~~~ 69 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRG--ITIDLGFAYLDLPSGKRLGFIDVPGHE----------KFIKNML 69 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccC--ceEEeeeEEEEecCCcEEEEEECCChH----------HHHHHHH
Confidence 69999999999999999999754322221 233 6777776666665 7899999999987 4545566
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcC--cHHHHHHHHHhc--CCCCcEEeec
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTG--SLAGAAAESLML--GFGDPIAISA 274 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~--~~~~~~~~~~~~--~~~~~i~iSA 274 (607)
.++..+|++++|+|++++...+..+...+++.. ...|+++|+||+|+...... ........+... ...+++++||
T Consensus 70 ~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~-~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 148 (164)
T cd04171 70 AGAGGIDLVLLVVAADEGIMPQTREHLEILELL-GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSA 148 (164)
T ss_pred hhhhcCCEEEEEEECCCCccHhHHHHHHHHHHh-CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeC
Confidence 778899999999999886655554444445443 22499999999999753210 011222222221 1237899999
Q ss_pred CCCCChHHHHHHhcc
Q 007334 275 ETGLGMTELYEALRP 289 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~ 289 (607)
++|.|++++++.+..
T Consensus 149 ~~~~~v~~l~~~l~~ 163 (164)
T cd04171 149 VTGEGIEELKEYLDE 163 (164)
T ss_pred CCCcCHHHHHHHHhh
Confidence 999999999998753
No 36
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=6.9e-22 Score=180.43 Aligned_cols=160 Identities=21% Similarity=0.246 Sum_probs=126.1
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceee--eccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREAL--VYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~--v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+++|..|||||||+-|+....+.. .+.....+.|....... ...+|.||||+|++ ++....
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~---~~ikfeIWDTAGQE----------Ry~sla 71 (200)
T KOG0092|consen 5 EFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDD---NTIKFEIWDTAGQE----------RYHSLA 71 (200)
T ss_pred eEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCC---cEEEEEEEEcCCcc----------cccccc
Confidence 3689999999999999999999877633 33333344554443321 24789999999999 666777
Q ss_pred HHHhhccCEEEEEEecCCCCCHhH-HHHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLD-LEVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~-~~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..|+++|+++|+|+|+++..++.. +.+.+-|++. .+++-+.+|+||+|+...+.+..++....+...|+ .++++||+
T Consensus 72 pMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gl-l~~ETSAK 150 (200)
T KOG0092|consen 72 PMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGL-LFFETSAK 150 (200)
T ss_pred cceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCC-EEEEEecc
Confidence 789999999999999999877776 2344444443 34555678999999999888888888888888888 88999999
Q ss_pred CCCChHHHHHHhccchHH
Q 007334 276 TGLGMTELYEALRPSVED 293 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~~ 293 (607)
+|.|++++|..|.+.++.
T Consensus 151 Tg~Nv~~if~~Ia~~lp~ 168 (200)
T KOG0092|consen 151 TGENVNEIFQAIAEKLPC 168 (200)
T ss_pred cccCHHHHHHHHHHhccC
Confidence 999999999999988865
No 37
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.86 E-value=1.1e-20 Score=177.29 Aligned_cols=158 Identities=18% Similarity=0.194 Sum_probs=115.1
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
.++|+++|.+|||||||++++.+........ + +.+.+.....+.+++ ..+.+|||||+. ++...+
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~-~--t~~~~~~~~~~~~~~~~~~l~i~D~~G~~----------~~~~~~ 69 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQG-N--TIGVDFTMKTLEIEGKRVKLQIWDTAGQE----------RFRTIT 69 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCC-C--ccceEEEEEEEEECCEEEEEEEEECCChH----------HHHHHH
Confidence 4689999999999999999998765422211 1 133444445555565 578999999987 555667
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..++..+|++++|+|++++.+.... .+...+... ..+.|+++|+||+|+...+..............+...++++||+
T Consensus 70 ~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~ 149 (165)
T cd01864 70 QSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAK 149 (165)
T ss_pred HHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECC
Confidence 7788999999999999987665542 233333332 34789999999999987654444444455555665567999999
Q ss_pred CCCChHHHHHHhccc
Q 007334 276 TGLGMTELYEALRPS 290 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~ 290 (607)
+|.|++++++.|.+.
T Consensus 150 ~~~~v~~~~~~l~~~ 164 (165)
T cd01864 150 ESQNVEEAFLLMATE 164 (165)
T ss_pred CCCCHHHHHHHHHHh
Confidence 999999999998753
No 38
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=3e-21 Score=176.94 Aligned_cols=151 Identities=21% Similarity=0.228 Sum_probs=118.2
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..+||.++|..|||||+|+.++.+.. +.-+....+.+|.....++++|. +++||||||+.+++ ..+.
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~~~-f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFr----------tit~ 76 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKDDT-FTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFR----------TITS 76 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhccCC-cchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHh----------hhhH
Confidence 45899999999999999999999663 44445556678888888888887 57899999976553 3456
Q ss_pred HHHhhccEEEEEeccchh--------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEV--------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~--------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
.++++||++|+|||.++. .....++|.++|+||+|+.+.. .+..+..+.++...+
T Consensus 77 syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~-----------~v~~~~a~~fa~~~~ 145 (205)
T KOG0084|consen 77 SYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKR-----------VVSTEEAQEFADELG 145 (205)
T ss_pred hhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhhe-----------ecCHHHHHHHHHhcC
Confidence 899999999999999985 1123578999999999998752 233444455556667
Q ss_pred CC-EEEcccCCCCCHHHHHHHHHHHHHHHh
Q 007334 467 IP-VVFTSALEGRGRIAVMHQVIDTYQKWC 495 (607)
Q Consensus 467 ~~-~v~iSA~~g~gv~~l~~~i~~~~~~~~ 495 (607)
.| ++++|||.+.||++.|..+...+.+..
T Consensus 146 ~~~f~ETSAK~~~NVe~~F~~la~~lk~~~ 175 (205)
T KOG0084|consen 146 IPIFLETSAKDSTNVEDAFLTLAKELKQRK 175 (205)
T ss_pred CcceeecccCCccCHHHHHHHHHHHHHHhc
Confidence 88 999999999999999999887765433
No 39
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.86 E-value=1.2e-20 Score=180.62 Aligned_cols=160 Identities=18% Similarity=0.186 Sum_probs=122.1
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+++|..|||||||++++....+. .... .+.+.+.....+..++ ..+.+|||+|+. ++...+
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~~~~~--~~~~-~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~----------~~~~l~ 72 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDGSTE--SPYG-YNMGIDYKTTTILLDGRRVKLQLWDTSGQG----------RFCTIF 72 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCC--CCCC-CcceeEEEEEEEEECCEEEEEEEEeCCCcH----------HHHHHH
Confidence 468999999999999999999976542 1111 1134555445555555 678999999998 566667
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHHH-HHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAET 276 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~ 276 (607)
..+++.+|++|+|+|++++.+..+.. +.+.+.+..++.|+|+|+||+|+...+....++....+...+. +++++||++
T Consensus 73 ~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~-~~~e~SAk~ 151 (189)
T cd04121 73 RSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAERNGM-TFFEVSPLC 151 (189)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHHHHcCC-EEEEecCCC
Confidence 78899999999999999988877733 4444444456899999999999977655555666666666776 789999999
Q ss_pred CCChHHHHHHhccchHH
Q 007334 277 GLGMTELYEALRPSVED 293 (607)
Q Consensus 277 g~gi~eL~~~i~~~l~~ 293 (607)
|.|++++|+.|.+.+..
T Consensus 152 g~~V~~~F~~l~~~i~~ 168 (189)
T cd04121 152 NFNITESFTELARIVLM 168 (189)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999876543
No 40
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.86 E-value=1.3e-20 Score=182.32 Aligned_cols=158 Identities=21% Similarity=0.239 Sum_probs=118.3
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
.|+++|.+|||||||++++....+. .... .+++.+.....+.+++ ..+.+|||+|++ ++...+..
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~--~~~~-~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe----------~~~~l~~~ 68 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFC--EACK-SGVGVDFKIKTVELRGKKIRLQIWDTAGQE----------RFNSITSA 68 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCC--CcCC-CcceeEEEEEEEEECCEEEEEEEEeCCCch----------hhHHHHHH
Confidence 5899999999999999999987652 2222 1244565555666665 678999999998 56667788
Q ss_pred HhhccCEEEEEEecCCCCCHhHHH-HHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhc-CCCCcEEeecCC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLML-GFGDPIAISAET 276 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~-~~~~~i~iSA~~ 276 (607)
+++.||++|+|+|++++.+..+.. +.+.+++. ..+.|+++|+||+|+...+.+........+... +. .++++||++
T Consensus 69 y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~-~~~etSAkt 147 (202)
T cd04120 69 YYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGM-RFCEASAKD 147 (202)
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCC-EEEEecCCC
Confidence 999999999999999988777632 44444443 347899999999999765555444444444443 44 689999999
Q ss_pred CCChHHHHHHhccchHH
Q 007334 277 GLGMTELYEALRPSVED 293 (607)
Q Consensus 277 g~gi~eL~~~i~~~l~~ 293 (607)
|.|++++|++|...+..
T Consensus 148 g~gV~e~F~~l~~~~~~ 164 (202)
T cd04120 148 NFNVDEIFLKLVDDILK 164 (202)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999876644
No 41
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.86 E-value=8.4e-21 Score=177.21 Aligned_cols=155 Identities=19% Similarity=0.211 Sum_probs=110.7
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
++|+++|.+|||||||++++++..+. ..... ++.+.....+..++ ..+.+|||||++ ++.....
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~ 67 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFV--EKYDP--TIEDSYRKQIEVDGQQCMLEILDTAGTE----------QFTAMRD 67 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--cccCC--chhhhEEEEEEECCEEEEEEEEECCCcc----------ccchHHH
Confidence 57999999999999999999976542 22222 44444444455555 457789999987 4445556
Q ss_pred HHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
.++..+|++++|+|++++.+..+. .+...+.+. ..+.|+++|+||+|+...+..............+. +++++||+
T Consensus 68 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 146 (163)
T cd04136 68 LYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGC-PFYETSAK 146 (163)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCC-eEEEecCC
Confidence 678999999999999987666542 234444432 24689999999999876544333333333344453 78999999
Q ss_pred CCCChHHHHHHhccc
Q 007334 276 TGLGMTELYEALRPS 290 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~ 290 (607)
+|.|+++++++|.+.
T Consensus 147 ~~~~v~~l~~~l~~~ 161 (163)
T cd04136 147 SKINVDEVFADLVRQ 161 (163)
T ss_pred CCCCHHHHHHHHHHh
Confidence 999999999998754
No 42
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.86 E-value=1.7e-20 Score=175.99 Aligned_cols=156 Identities=21% Similarity=0.275 Sum_probs=112.1
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC--CeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG--DLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.+|||||||+|+|++.++.... .+. ++.+.....+... ...+.+|||||+. ++.....
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~~t--~~~~~~~~~~~~~~~~~~~~l~Dt~g~~----------~~~~~~~ 68 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAF-VST--VGIDFKVKTVFRNDKRVKLQIWDTAGQE----------RYRTITT 68 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCC-CCc--eeeEEEEEEEEECCEEEEEEEEECCChH----------HHHHHHH
Confidence 57999999999999999999987652211 121 2222222233333 3579999999987 4555667
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHHHHHHHHhh---C-CCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeec
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH---A-PQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISA 274 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~---~-~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA 274 (607)
.+++.+|++++|+|+++..+.+. +.+|+... . .+.|+++|+||+|+...+....+........+++ +++++||
T Consensus 69 ~~~~~~~~~l~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa 145 (165)
T cd01865 69 AYYRGAMGFILMYDITNEESFNA--VQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGF-EFFEASA 145 (165)
T ss_pred HHccCCcEEEEEEECCCHHHHHH--HHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCC-EEEEEEC
Confidence 88999999999999987655443 34444432 2 4689999999999987654444444444556666 7899999
Q ss_pred CCCCChHHHHHHhccchH
Q 007334 275 ETGLGMTELYEALRPSVE 292 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~~l~ 292 (607)
++|.|++++++.|.+.+.
T Consensus 146 ~~~~gv~~l~~~l~~~~~ 163 (165)
T cd01865 146 KENINVKQVFERLVDIIC 163 (165)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999987654
No 43
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.85 E-value=7.5e-22 Score=194.98 Aligned_cols=269 Identities=20% Similarity=0.272 Sum_probs=169.6
Q ss_pred hhhHHhhhhhcccccccccccccc----CCCCC---CCCCcchhhhhhhhhhhhhccccchhhhhhhhhcccccccccc-
Q 007334 4 SWVRAVLARKSSLGFGLFGRSISS----STNPV---NLCKPFNFTLNNYSHIRASAAGSLYQVGSSLKCNLLPEVPRGF- 75 (607)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~qv~la~l~~~~~~~~~~~- 75 (607)
.++|.||+++++.....+.-.... =++-. ++......+++...+++.+-+ .+.+|.. +.-++.+.+
T Consensus 41 ~kar~~e~~rv~t~~~i~~d~l~~iv~~~P~id~LhpFY~eLidvl~d~d~~k~sLs----~v~~A~~--~i~~l~~eYi 114 (346)
T COG1084 41 VKAREFEIRRVKTASNIVRDRLDKIVERFPSLDDLHPFYRELIDVLVDIDHLKISLS----AVSWASK--IIEKLAREYI 114 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccChHHHHHHHHHhCHHHHHHHHH----HHHHHHH--HHHHHHHHHH
Confidence 467889999999988776544322 11222 333333466666666655322 2222221 011111111
Q ss_pred ------------cccccc-cCccCCCCCCCCCCccccccccccccCCcccccccccCCCEEEEecCCCCchhHHHHHhhc
Q 007334 76 ------------CGVVQN-EALEDTHVEPEPDGVVEDHKVKPLYEKPVDFTKIDINLLPTVMIIGRPNVGKSALFNRLIR 142 (607)
Q Consensus 76 ------------~~~~~~-~g~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~ivG~~nvGKSSL~n~L~~ 142 (607)
..+.|+ .|-..+.+..-.+.+ ..+.+.+..+.+++.... ..|+|+|.|+||||||||++++++
T Consensus 115 ~~lk~a~~~~~~~~lrR~a~GR~aSiik~i~~~L---~fL~~~r~~l~~LP~Idp-~~pTivVaG~PNVGKSSlv~~lT~ 190 (346)
T COG1084 115 RLLKAAKDPKEANQLRRQAFGRVASIIKKIDDDL---EFLRKARDHLKKLPAIDP-DLPTIVVAGYPNVGKSSLVRKLTT 190 (346)
T ss_pred HHHhcCCChhHHHHHHHHHHHHHHHHHHHhhHHH---HHHHHHHHHHhcCCCCCC-CCCeEEEecCCCCcHHHHHHHHhc
Confidence 112222 232222333222223 333344445544444443 379999999999999999999999
Q ss_pred cceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHhh-ccCEEEEEEecCC--CCCH
Q 007334 143 RREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVLA-KTQFAIFMIDVRS--GLHP 219 (607)
Q Consensus 143 ~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~-~ad~vl~VvD~s~--~~~~ 219 (607)
.+.. +.++|+ ||+....|+++.++.++++|||||+.+.. .. ..+....+...+++ -+++|+|++|.|. +.+.
T Consensus 191 AkpE-vA~YPF--TTK~i~vGhfe~~~~R~QvIDTPGlLDRP-l~-ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~l 265 (346)
T COG1084 191 AKPE-VAPYPF--TTKGIHVGHFERGYLRIQVIDTPGLLDRP-LE-ERNEIERQAILALRHLAGVILFLFDPSETCGYSL 265 (346)
T ss_pred CCCc-cCCCCc--cccceeEeeeecCCceEEEecCCcccCCC-hH-HhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCH
Confidence 8754 556776 99999999999999999999999998443 22 22234444444554 4679999999987 4555
Q ss_pred hH-HHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCChHHHHHHhccc
Q 007334 220 LD-LEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPS 290 (607)
Q Consensus 220 ~~-~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi~eL~~~i~~~ 290 (607)
++ ..+++.++..+. .|+++|+||+|....+. .++........|..++..+|+..+.+++.+.+.+...
T Consensus 266 E~Q~~L~~eIk~~f~-~p~v~V~nK~D~~~~e~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~ 334 (346)
T COG1084 266 EEQISLLEEIKELFK-APIVVVINKIDIADEEK--LEEIEASVLEEGGEEPLKISATKGCGLDKLREEVRKT 334 (346)
T ss_pred HHHHHHHHHHHHhcC-CCeEEEEecccccchhH--HHHHHHHHHhhccccccceeeeehhhHHHHHHHHHHH
Confidence 54 446677777664 89999999999885432 2333334555566568899999999999888877655
No 44
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.85 E-value=9.5e-21 Score=206.74 Aligned_cols=169 Identities=25% Similarity=0.350 Sum_probs=127.8
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHH--HH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAG--MT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~--~~ 197 (607)
.++|+|+|+||||||||+|+|++.....++..++ +|+|.....+.+++..+.+|||||+.......... +++. .+
T Consensus 211 ~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~g--tT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~-e~~~~~~~ 287 (472)
T PRK03003 211 PRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAG--TTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGH-EYYASLRT 287 (472)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCcccccCCCC--ccCCcceEEEEECCEEEEEEECCCccccccccchH-HHHHHHHH
Confidence 5799999999999999999999988777788888 99999888888889999999999986432211111 2222 23
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCc-HH-HHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGS-LA-GAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~-~~-~~~~~~~~~~~~~~i~iSA~ 275 (607)
..++..||++++|+|++++.+..+..++..+... ++|+|+|+||+|+....... .. .....+....+.+++++||+
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~--~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk 365 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEA--GRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAK 365 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHc--CCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECC
Confidence 4578999999999999999999987777666654 78999999999997532110 01 11111222334477999999
Q ss_pred CCCChHHHHHHhccchHH
Q 007334 276 TGLGMTELYEALRPSVED 293 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~~ 293 (607)
+|.|++++++.|.+.++.
T Consensus 366 ~g~gv~~lf~~i~~~~~~ 383 (472)
T PRK03003 366 TGRAVDKLVPALETALES 383 (472)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999877654
No 45
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.85 E-value=2.3e-20 Score=174.47 Aligned_cols=156 Identities=18% Similarity=0.182 Sum_probs=111.7
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.+|||||||+|++++... +..... ++.+.......+.+ ..+.+|||||+. ++.....
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~--~~~~~~--t~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~ 68 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYF--VTDYDP--TIEDSYTKQCEIDGQWAILDILDTAGQE----------EFSAMRE 68 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCC--CcccCC--CccceEEEEEEECCEEEEEEEEECCCCc----------chhHHHH
Confidence 5899999999999999999998654 233333 44444444444554 468899999987 4445566
Q ss_pred HHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
.++..+|++++|+|++++.+.... .+...+... ..+.|+++|+||+|+..................+. +++++||+
T Consensus 69 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 147 (164)
T cd04145 69 QYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKI-PYIETSAK 147 (164)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCC-cEEEeeCC
Confidence 788999999999999987665542 222223222 24789999999999976544333344444455566 78999999
Q ss_pred CCCChHHHHHHhccch
Q 007334 276 TGLGMTELYEALRPSV 291 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l 291 (607)
+|.|++++++.|...+
T Consensus 148 ~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 148 DRLNVDKAFHDLVRVI 163 (164)
T ss_pred CCCCHHHHHHHHHHhh
Confidence 9999999999987643
No 46
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.85 E-value=2.6e-20 Score=173.60 Aligned_cols=155 Identities=17% Similarity=0.234 Sum_probs=115.0
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
+|+++|++|||||||+|+|++.+... ...+. ++.+.....+..++ ..+.+|||||.. .+......
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~l~~~D~~G~~----------~~~~~~~~ 68 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDN-QYQAT--IGIDFLSKTMYLEDKTVRLQLWDTAGQE----------RFRSLIPS 68 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCc-cCCCc--eeeeEEEEEEEECCEEEEEEEEECCCcH----------HHHHHHHH
Confidence 79999999999999999999887543 33444 67777666666655 468999999987 55566777
Q ss_pred HhhccCEEEEEEecCCCCCHhHHH-HHHHHH-hhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDLE-VGKWLR-KHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETG 277 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~-~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g 277 (607)
++..+|++++|+|++++.+..+.. +...+. ....+.|+++|+||+|+..................+. .++++||++|
T Consensus 69 ~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 147 (161)
T cd01861 69 YIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNA-MFIETSAKAG 147 (161)
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCC-EEEEEeCCCC
Confidence 899999999999999876665522 333222 2223589999999999965443333433444445554 6899999999
Q ss_pred CChHHHHHHhccc
Q 007334 278 LGMTELYEALRPS 290 (607)
Q Consensus 278 ~gi~eL~~~i~~~ 290 (607)
.|+++++++|.+.
T Consensus 148 ~~v~~l~~~i~~~ 160 (161)
T cd01861 148 HNVKELFRKIASA 160 (161)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999998754
No 47
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.85 E-value=2.2e-20 Score=183.15 Aligned_cols=158 Identities=20% Similarity=0.209 Sum_probs=115.8
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC---CeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG---DLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
+|+++|++|||||||+|+|++..+... ..+ +.+.|.....+.+. ...+.||||||+. .+.....
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~~~-~~~--T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~----------~~~~l~~ 68 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFGKS-YKQ--TIGLDFFSKRVTLPGNLNVTLQVWDIGGQS----------IGGKMLD 68 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCC-CCC--ceeEEEEEEEEEeCCCCEEEEEEEECCCcH----------HHHHHHH
Confidence 799999999999999999998764221 122 24556655555553 3688999999986 4455666
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHH-HHHHHHhhC----CCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEee
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKHA----PQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAIS 273 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~~----~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iS 273 (607)
.++..+|++|+|+|++++.+.++.. +...+.+.. .+.|+++|+||+|+...+....+.........+. +.+++|
T Consensus 69 ~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~-~~~~iS 147 (215)
T cd04109 69 KYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGM-ESCLVS 147 (215)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCC-EEEEEE
Confidence 7889999999999999877766532 444444432 2357899999999976555444444445555665 689999
Q ss_pred cCCCCChHHHHHHhccchHH
Q 007334 274 AETGLGMTELYEALRPSVED 293 (607)
Q Consensus 274 A~~g~gi~eL~~~i~~~l~~ 293 (607)
|++|+|++++++.|...+..
T Consensus 148 Aktg~gv~~lf~~l~~~l~~ 167 (215)
T cd04109 148 AKTGDRVNLLFQQLAAELLG 167 (215)
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999876643
No 48
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=1.3e-20 Score=171.79 Aligned_cols=157 Identities=18% Similarity=0.300 Sum_probs=128.4
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|..+||||||+++++-..+... -.++...|+....+.+.+ +.++||||+|++ +|.....
T Consensus 23 ~KlVflGdqsVGKTslItRf~yd~fd~~---YqATIGiDFlskt~~l~d~~vrLQlWDTAGQE----------RFrslip 89 (221)
T KOG0094|consen 23 YKLVFLGDQSVGKTSLITRFMYDKFDNT---YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE----------RFRSLIP 89 (221)
T ss_pred EEEEEEccCccchHHHHHHHHHhhhccc---ccceeeeEEEEEEEEEcCcEEEEEEEecccHH----------HHhhhhh
Confidence 6899999999999999999998765322 223466777777777665 478999999999 8999999
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHHHHHHHHh----hCC-CCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEee
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRK----HAP-QIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAIS 273 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~----~~~-~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iS 273 (607)
.|+++|.++|.|+|+++..+.++ .-+||.+ ..+ +.-+++|+||.||.+.++...++....+..++. .++++|
T Consensus 90 sY~Rds~vaviVyDit~~~Sfe~--t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a-~f~ets 166 (221)
T KOG0094|consen 90 SYIRDSSVAVIVYDITDRNSFEN--TSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNA-EFIETS 166 (221)
T ss_pred hhccCCeEEEEEEeccccchHHH--HHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCc-EEEEec
Confidence 99999999999999999888887 3344433 333 356789999999999887777776677777777 889999
Q ss_pred cCCCCChHHHHHHhccchHH
Q 007334 274 AETGLGMTELYEALRPSVED 293 (607)
Q Consensus 274 A~~g~gi~eL~~~i~~~l~~ 293 (607)
|+.|+||.+||..|...++.
T Consensus 167 ak~g~NVk~lFrrIaa~l~~ 186 (221)
T KOG0094|consen 167 AKAGENVKQLFRRIAAALPG 186 (221)
T ss_pred ccCCCCHHHHHHHHHHhccC
Confidence 99999999999999888765
No 49
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.85 E-value=1.8e-20 Score=175.78 Aligned_cols=154 Identities=21% Similarity=0.231 Sum_probs=107.9
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEE--EeeeCCeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREG--LAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~--~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.+|||||||+|++++..+.... .+ ++...... ........+.+|||||+. ++.....
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~-~~---t~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~ 67 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESY-IP---TIEDTYRQVISCSKNICTLQITDTTGSH----------QFPAMQR 67 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCc-CC---cchheEEEEEEECCEEEEEEEEECCCCC----------cchHHHH
Confidence 47999999999999999999987642111 11 11111111 222234678999999998 3444455
Q ss_pred HHhhccCEEEEEEecCCCCCHhH-HHHHHHHHhh----CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEee
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLD-LEVGKWLRKH----APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAIS 273 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~-~~~~~~l~~~----~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iS 273 (607)
.++..+|++++|+|++++.+... ..+.+++++. .++.|+++|+||+|+...+..............+. .++++|
T Consensus 68 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~S 146 (165)
T cd04140 68 LSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNC-AFMETS 146 (165)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCC-cEEEee
Confidence 67889999999999998777665 2344555543 24789999999999976444433333334444454 679999
Q ss_pred cCCCCChHHHHHHhcc
Q 007334 274 AETGLGMTELYEALRP 289 (607)
Q Consensus 274 A~~g~gi~eL~~~i~~ 289 (607)
|++|.|+++++++|.+
T Consensus 147 A~~g~~v~~~f~~l~~ 162 (165)
T cd04140 147 AKTNHNVQELFQELLN 162 (165)
T ss_pred cCCCCCHHHHHHHHHh
Confidence 9999999999999864
No 50
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.85 E-value=3e-20 Score=173.40 Aligned_cols=154 Identities=21% Similarity=0.237 Sum_probs=111.9
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC----CeeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG----DLRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~----~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
+|+++|.+|||||||+|++++..+.. ...+. .+.+.....+.+. ...+.+|||||+. ++...+
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~-~~~~t--~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~ 68 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTK-DYKKT--IGVDFLEKQIFLRQSDEDVRLMLWDTAGQE----------EFDAIT 68 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC-CCCCc--EEEEEEEEEEEEcCCCCEEEEEEeeCCchH----------HHHHhH
Confidence 69999999999999999999875421 11222 3444433333333 4679999999987 555666
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAET 276 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~ 276 (607)
..+++.+|++++|+|++++.+.... .+...+.....+.|+++|+||+|+........++........++ +++++||++
T Consensus 69 ~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~ 147 (162)
T cd04106 69 KAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQL-PLFRTSVKD 147 (162)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCC-eEEEEECCC
Confidence 7789999999999999987655542 12233333345899999999999987655444444445556676 789999999
Q ss_pred CCChHHHHHHhcc
Q 007334 277 GLGMTELYEALRP 289 (607)
Q Consensus 277 g~gi~eL~~~i~~ 289 (607)
|.|++++++.|.+
T Consensus 148 ~~~v~~l~~~l~~ 160 (162)
T cd04106 148 DFNVTELFEYLAE 160 (162)
T ss_pred CCCHHHHHHHHHH
Confidence 9999999998864
No 51
>PRK15494 era GTPase Era; Provisional
Probab=99.85 E-value=9.9e-21 Score=197.42 Aligned_cols=157 Identities=24% Similarity=0.299 Sum_probs=117.9
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+.++|+++|+||||||||+|+|++.....+++.++||++...+.+.+++.++.+|||||+.+... .........+..+
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~--~l~~~~~r~~~~~ 128 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKG--SLEKAMVRCAWSS 128 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcc--cHHHHHHHHHHHH
Confidence 45799999999999999999999988788899999999998888889999999999999854321 1222233445567
Q ss_pred HhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEc
Q 007334 403 LMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFT 472 (607)
Q Consensus 403 i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i 472 (607)
+..||++|+|+|+++. .....+.|.|+|+||+|+.+. . ...+. +.+... ....+++++
T Consensus 129 l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~-~----~~~~~----~~l~~~---~~~~~i~~i 196 (339)
T PRK15494 129 LHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESK-Y----LNDIK----AFLTEN---HPDSLLFPI 196 (339)
T ss_pred hhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccc-c----HHHHH----HHHHhc---CCCcEEEEE
Confidence 8899999999998764 112346788999999998643 1 11111 111111 123579999
Q ss_pred ccCCCCCHHHHHHHHHHHHHH
Q 007334 473 SALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 473 SA~~g~gv~~l~~~i~~~~~~ 493 (607)
||++|.|++++++.+...+..
T Consensus 197 SAktg~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 197 SALSGKNIDGLLEYITSKAKI 217 (339)
T ss_pred eccCccCHHHHHHHHHHhCCC
Confidence 999999999999999887554
No 52
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.85 E-value=3.4e-20 Score=174.00 Aligned_cols=155 Identities=20% Similarity=0.299 Sum_probs=113.6
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.+|||||||++++++..+... ..+. .+.+.....+...+ ..+.+|||||+. ++.....
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~-~~~t--~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~~ 69 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTES-YIST--IGVDFKIRTIELDGKTIKLQIWDTAGQE----------RFRTITS 69 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCC-CCCc--cceeEEEEEEEECCEEEEEEEEECCCcH----------hHHHHHH
Confidence 5899999999999999999998765321 1222 34444444444444 478999999987 5556667
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHHHHHHHHh---hC-CCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeec
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRK---HA-PQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISA 274 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~---~~-~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA 274 (607)
.+++.+|++++|+|++++.+..+ +.+|+.. .. ++.|+++|+||+|+..................+. +++++||
T Consensus 70 ~~~~~~~~ii~v~d~~~~~s~~~--l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa 146 (166)
T cd01869 70 SYYRGAHGIIIVYDVTDQESFNN--VKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGI-PFLETSA 146 (166)
T ss_pred HHhCcCCEEEEEEECcCHHHHHh--HHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCC-eEEEEEC
Confidence 78899999999999998655554 3334433 22 4689999999999876554444444445555566 7899999
Q ss_pred CCCCChHHHHHHhccch
Q 007334 275 ETGLGMTELYEALRPSV 291 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~~l 291 (607)
++|.|++++++.|.+.+
T Consensus 147 ~~~~~v~~~~~~i~~~~ 163 (166)
T cd01869 147 KNATNVEQAFMTMAREI 163 (166)
T ss_pred CCCcCHHHHHHHHHHHH
Confidence 99999999999988755
No 53
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.85 E-value=1.2e-20 Score=203.59 Aligned_cols=153 Identities=27% Similarity=0.398 Sum_probs=126.2
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHh
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLM 404 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~ 404 (607)
.+||++|.||||||||+|+|+|. +..++++||+|++..++.+.+.+.++.++|+||.+........| .-+++++.
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~-~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE----~Var~~ll 78 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGA-NQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDE----KVARDFLL 78 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhcc-CceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchH----HHHHHHHh
Confidence 56999999999999999999987 58999999999999999999999999999999998874332222 23445554
Q ss_pred --hccEEEEEeccchh--------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEccc
Q 007334 405 --RAHVVALVLDAEEV--------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSA 474 (607)
Q Consensus 405 --~ad~~llViD~~~~--------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA 474 (607)
++|+++.|+|+++. +..+.++|+|+++|++|+.+......+.+++.+. .++|++++||
T Consensus 79 ~~~~D~ivnVvDAtnLeRnLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~------------LGvPVv~tvA 146 (653)
T COG0370 79 EGKPDLIVNVVDATNLERNLYLTLQLLELGIPMILALNMIDEAKKRGIRIDIEKLSKL------------LGVPVVPTVA 146 (653)
T ss_pred cCCCCEEEEEcccchHHHHHHHHHHHHHcCCCeEEEeccHhhHHhcCCcccHHHHHHH------------hCCCEEEEEe
Confidence 58999999999986 5678899999999999998776554444444322 3899999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q 007334 475 LEGRGRIAVMHQVIDTYQKW 494 (607)
Q Consensus 475 ~~g~gv~~l~~~i~~~~~~~ 494 (607)
++|.|++++++++.+..+..
T Consensus 147 ~~g~G~~~l~~~i~~~~~~~ 166 (653)
T COG0370 147 KRGEGLEELKRAIIELAESK 166 (653)
T ss_pred ecCCCHHHHHHHHHHhcccc
Confidence 99999999999998765443
No 54
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.85 E-value=2.9e-20 Score=174.52 Aligned_cols=156 Identities=23% Similarity=0.301 Sum_probs=112.9
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC---CeeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG---DLRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
|+|+|+|++|||||||+|+|++.+.... ..++ +|.+.....+... +..+.+|||||+. .+...+
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~-~~~~--~t~~~~~~~~~~~~~~~~~~~iiDtpG~~----------~~~~~~ 67 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAG-EAGG--ITQHIGAFEVPAEVLKIPGITFIDTPGHE----------AFTNMR 67 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccc-cCCC--eEEeeccEEEecccCCcceEEEEeCCCcH----------HHHHHH
Confidence 6799999999999999999998765432 2333 6766655555553 6789999999986 344455
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHh-----cC-CCCcEE
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLM-----LG-FGDPIA 271 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~-----~~-~~~~i~ 271 (607)
...+..+|++++|+|++++..........+++.. ++|+++|+||+|+................. .+ ..++++
T Consensus 68 ~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~--~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (168)
T cd01887 68 ARGASLTDIAILVVAADDGVMPQTIEAIKLAKAA--NVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVP 145 (168)
T ss_pred HHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHc--CCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEE
Confidence 5677899999999999987766666666666654 789999999999875321111111111111 11 126799
Q ss_pred eecCCCCChHHHHHHhccch
Q 007334 272 ISAETGLGMTELYEALRPSV 291 (607)
Q Consensus 272 iSA~~g~gi~eL~~~i~~~l 291 (607)
+||++|+|+++|+++|.+..
T Consensus 146 ~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 146 TSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred eecccCCCHHHHHHHHHHhh
Confidence 99999999999999987653
No 55
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.85 E-value=3.7e-20 Score=173.52 Aligned_cols=155 Identities=24% Similarity=0.316 Sum_probs=112.8
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+++|++|||||||+|+|++.+..... .+. ++.+.....+...+ ..+.+|||||+. ++....
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-~~t--~~~~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~~~~ 69 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDS-KST--IGVEFATRSIQIDGKTIKAQIWDTAGQE----------RYRAIT 69 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCC-CCc--cceEEEEEEEEECCEEEEEEEEeCCChH----------HHHHHH
Confidence 468999999999999999999987653222 232 44455455555555 468999999987 455566
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHHHHHHHHH---hhC-CCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEee
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLR---KHA-PQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAIS 273 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~---~~~-~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iS 273 (607)
..++..++++++|+|++++.+..+ +.+|+. +.. .+.|+++|+||+|+...+....+.........+. .++++|
T Consensus 70 ~~~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~S 146 (165)
T cd01868 70 SAYYRGAVGALLVYDITKKQTFEN--VERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGL-SFIETS 146 (165)
T ss_pred HHHHCCCCEEEEEEECcCHHHHHH--HHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCC-EEEEEE
Confidence 678899999999999997666554 334443 332 2589999999999976544444444444444454 689999
Q ss_pred cCCCCChHHHHHHhccc
Q 007334 274 AETGLGMTELYEALRPS 290 (607)
Q Consensus 274 A~~g~gi~eL~~~i~~~ 290 (607)
|++|.|++++++.|...
T Consensus 147 a~~~~~v~~l~~~l~~~ 163 (165)
T cd01868 147 ALDGTNVEEAFKQLLTE 163 (165)
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 99999999999998754
No 56
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=1e-20 Score=176.30 Aligned_cols=150 Identities=20% Similarity=0.174 Sum_probs=121.2
Q ss_pred cCCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHH
Q 007334 322 KLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQS 399 (607)
Q Consensus 322 ~~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~ 399 (607)
+..+||+++|.+|||||+++-++.. +.+..+.......|.....++.+|. .+++|||+|+.++. ..+
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d-~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~----------ti~ 78 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSD-DSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFR----------TIT 78 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhh-ccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHH----------HHH
Confidence 3468999999999999999999984 4455666666778888888888887 45699999976553 345
Q ss_pred HHHHhhccEEEEEeccchh--------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCC
Q 007334 400 RKNLMRAHVVALVLDAEEV--------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVT 465 (607)
Q Consensus 400 ~~~i~~ad~~llViD~~~~--------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (607)
..|+++|+++++|||.++. .....+.|.++|+||+|+... +.++.+.++.++...
T Consensus 79 ~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~-----------R~V~~e~ge~lA~e~ 147 (207)
T KOG0078|consen 79 TAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEK-----------RQVSKERGEALAREY 147 (207)
T ss_pred HHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeecccccccc-----------ccccHHHHHHHHHHh
Confidence 6899999999999999985 222358999999999999774 344555566666667
Q ss_pred CCCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 466 GIPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 466 ~~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
+++++++|||+|.||++.|..+.+.+..
T Consensus 148 G~~F~EtSAk~~~NI~eaF~~La~~i~~ 175 (207)
T KOG0078|consen 148 GIKFFETSAKTNFNIEEAFLSLARDILQ 175 (207)
T ss_pred CCeEEEccccCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999887664
No 57
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.85 E-value=2.7e-20 Score=174.11 Aligned_cols=156 Identities=15% Similarity=0.195 Sum_probs=110.6
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
+|+++|.+|||||||+|++++.... ..... ++.+........++ ..+.+|||||+. ++......
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~l~i~Dt~g~~----------~~~~~~~~ 67 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFV--DDYDP--TIEDSYRKQIEIDGEVCLLDILDTAGQE----------EFSAMRDQ 67 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC--cccCC--chhhhEEEEEEECCEEEEEEEEECCCcc----------cchHHHHH
Confidence 7999999999999999999987643 22222 34444333444444 578899999988 44445566
Q ss_pred HhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAET 276 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~ 276 (607)
++..+|++++|+|++++.+.... .+..++.+. ..+.|+++|+||+|+...+....+.........+. +++++||++
T Consensus 68 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 146 (164)
T smart00173 68 YMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGC-PFLETSAKE 146 (164)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCC-EEEEeecCC
Confidence 78899999999999987665542 233333332 23689999999999976544333333334444554 789999999
Q ss_pred CCChHHHHHHhccchH
Q 007334 277 GLGMTELYEALRPSVE 292 (607)
Q Consensus 277 g~gi~eL~~~i~~~l~ 292 (607)
|.|++++++.|.+.+.
T Consensus 147 ~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 147 RVNVDEAFYDLVREIR 162 (164)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999986553
No 58
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.85 E-value=1.5e-20 Score=194.64 Aligned_cols=154 Identities=21% Similarity=0.292 Sum_probs=114.2
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEE-cCeEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEY-QGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
..|+|||.||||||||+|+|++.. ..++++|+||+++..+.+.+ ++.++.+|||||+.+..... ..+ ....++++
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~-~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~--~gL-g~~flrhi 234 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEG--AGL-GHRFLKHI 234 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCC-CccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCcc--ccH-HHHHHHHh
Confidence 479999999999999999999864 56899999999999999888 56789999999997642110 011 23456788
Q ss_pred hhccEEEEEeccchh----------h-H--H---hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 404 MRAHVVALVLDAEEV----------R-A--V---EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 404 ~~ad~~llViD~~~~----------~-~--~---~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
.++|++|+|+|+++. . . . ..++|+++|+||+|+.+..... ... . ..... ..+.
T Consensus 235 e~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~---~~~---~-~~~~~----~~~~ 303 (335)
T PRK12299 235 ERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEER---EKR---A-ALELA----ALGG 303 (335)
T ss_pred hhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHH---HHH---H-HHHHH----hcCC
Confidence 899999999999853 0 1 1 1368999999999997542211 110 0 01111 1246
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
+++++||++++|++++++.+.+.+.+
T Consensus 304 ~i~~iSAktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 304 PVFLISAVTGEGLDELLRALWELLEE 329 (335)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 89999999999999999999876543
No 59
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.85 E-value=4.1e-20 Score=174.74 Aligned_cols=157 Identities=15% Similarity=0.133 Sum_probs=116.8
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.+|||||||++++.+..+.. .... +..+.....+..++ ..+.+|||||+. ++.....
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~--~~~~--t~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~l~~ 68 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPD--YHDP--TIEDAYKQQARIDNEPALLDILDTAGQA----------EFTAMRD 68 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCC--CcCC--cccceEEEEEEECCEEEEEEEEeCCCch----------hhHHHhH
Confidence 479999999999999999999876531 1111 33333333344445 568999999987 4556667
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHH-HHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
.++..+|++++|+|++++.+..... +..++.+. ..+.|+++|+||+|+...+....++....+...+. +++++||+
T Consensus 69 ~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~-~~~e~Sa~ 147 (172)
T cd04141 69 QYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNC-PFFETSAA 147 (172)
T ss_pred HHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCC-EEEEEecC
Confidence 7889999999999999988877733 44555543 34789999999999876655555555555555666 78999999
Q ss_pred CCCChHHHHHHhccchH
Q 007334 276 TGLGMTELYEALRPSVE 292 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~ 292 (607)
+|.|++++|++|...+-
T Consensus 148 ~~~~v~~~f~~l~~~~~ 164 (172)
T cd04141 148 LRHYIDDAFHGLVREIR 164 (172)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999986554
No 60
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.84 E-value=3.7e-20 Score=178.97 Aligned_cols=164 Identities=15% Similarity=0.129 Sum_probs=110.9
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
+|+|+|.+|||||||++++++.++.... .|. ++.+.....+.+++ ..+.+|||||....... ...++......
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~~~-~pt--~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~--~~~e~~~~~~~ 76 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPEEY-IPT--EHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGT--AGQEWMDPRFR 76 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCccc-CCc--cccccceeEEEECCEEEEEEEEeCCCcccCCcc--chhHHHHHHHh
Confidence 6999999999999999999987653322 232 33344334444556 56889999998643211 11123333456
Q ss_pred HhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh----CCCCcEEEEecCCCcccCCcCcHHHHHHHHH-hcCCCCcEEee
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH----APQIKPIVAMNKCESLHNGTGSLAGAAAESL-MLGFGDPIAIS 273 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~----~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~-~~~~~~~i~iS 273 (607)
++..+|++|+|+|++++.+.+.. .+.+.+... ..+.|+++|+||+|+...+....+....... ..+. +++++|
T Consensus 77 ~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~e~S 155 (198)
T cd04142 77 GLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKC-GYLECS 155 (198)
T ss_pred hhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCC-cEEEec
Confidence 68899999999999987666652 233444332 2468999999999997654433333222222 2344 689999
Q ss_pred cCCCCChHHHHHHhccch
Q 007334 274 AETGLGMTELYEALRPSV 291 (607)
Q Consensus 274 A~~g~gi~eL~~~i~~~l 291 (607)
|++|.|+++||+.+...+
T Consensus 156 ak~g~~v~~lf~~i~~~~ 173 (198)
T cd04142 156 AKYNWHILLLFKELLISA 173 (198)
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999888654
No 61
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.84 E-value=2.1e-20 Score=175.95 Aligned_cols=161 Identities=25% Similarity=0.239 Sum_probs=112.1
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCe-eEEEecCCCCccccCchhHHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDL-RFKVLDSAGLETEATSGSILDRTAGMTANV 200 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~-~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 200 (607)
.|+|||++|||||||+|+|++.+. .++..++ +|++...+.+...+. .+.+|||||+........ .........
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~-~v~~~~~--~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~---~~~~~~~~~ 75 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP-KIADYPF--TTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGK---GLGHRFLRH 75 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc-cccCCCc--cccCCcceEEEcCCCCeEEEEecCcccCcccccC---CchHHHHHH
Confidence 589999999999999999998654 4566666 777777777777776 999999999863221110 112233445
Q ss_pred hhccCEEEEEEecCCC-CCHhHH-HHHHHHHhhC---CCCcEEEEecCCCcccCCcCcHHHHHHHHHhc-CCCCcEEeec
Q 007334 201 LAKTQFAIFMIDVRSG-LHPLDL-EVGKWLRKHA---PQIKPIVAMNKCESLHNGTGSLAGAAAESLML-GFGDPIAISA 274 (607)
Q Consensus 201 ~~~ad~vl~VvD~s~~-~~~~~~-~~~~~l~~~~---~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~-~~~~~i~iSA 274 (607)
+..+|++++|+|++++ .+..+. .+.+.+.+.. .++|+++|+||+|+...... ......+... ...+++++||
T Consensus 76 ~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~Sa 153 (170)
T cd01898 76 IERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL--FELLKELLKELWGKPVFPISA 153 (170)
T ss_pred HHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh--HHHHHHHHhhCCCCCEEEEec
Confidence 6789999999999987 444432 2444444332 36899999999998764332 2222222222 1236899999
Q ss_pred CCCCChHHHHHHhccc
Q 007334 275 ETGLGMTELYEALRPS 290 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~~ 290 (607)
++|.|++++++.|.+.
T Consensus 154 ~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 154 LTGEGLDELLRKLAEL 169 (170)
T ss_pred CCCCCHHHHHHHHHhh
Confidence 9999999999998754
No 62
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.84 E-value=2.9e-20 Score=178.78 Aligned_cols=157 Identities=19% Similarity=0.227 Sum_probs=112.6
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCe--eEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDL--RFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
+|+++|.+|||||||+++|+...+. ...+. ++.+.........+. .+.+|||||.. ++......
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~--~~~~~--t~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~ 66 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFV--ETYDP--TIEDSYRKQVVVDGQPCMLEVLDTAGQE----------EYTALRDQ 66 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--ccCCC--chHhhEEEEEEECCEEEEEEEEECCCch----------hhHHHHHH
Confidence 4899999999999999999976653 22232 333333333444444 58899999987 45556667
Q ss_pred HhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh----CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeec
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH----APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISA 274 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~----~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA 274 (607)
++..+|++|+|+|+++..+..+. .+...+... ..+.|+++|+||+|+...+..............+. +++++||
T Consensus 67 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~SA 145 (190)
T cd04144 67 WIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGC-EFIEASA 145 (190)
T ss_pred HHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCC-EEEEecC
Confidence 89999999999999987666652 233434332 24689999999999976544444444444455565 6899999
Q ss_pred CCCCChHHHHHHhccchHH
Q 007334 275 ETGLGMTELYEALRPSVED 293 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~~l~~ 293 (607)
++|.|++++++.+.+.+..
T Consensus 146 k~~~~v~~l~~~l~~~l~~ 164 (190)
T cd04144 146 KTNVNVERAFYTLVRALRQ 164 (190)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999876654
No 63
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.84 E-value=6.4e-20 Score=177.99 Aligned_cols=160 Identities=21% Similarity=0.204 Sum_probs=116.2
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC---CeeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG---DLRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
.+|+++|.+|||||||+++|++....... .+ +...+.....+.+. ...+.+|||||++ ++...+
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~-~~--t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~----------~~~~~~ 67 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHY-KA--TIGVDFALKVIEWDPNTVVRLQLWDIAGQE----------RFGGMT 67 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCC-CC--ceeEEEEEEEEEECCCCEEEEEEEECCCch----------hhhhhH
Confidence 37999999999999999999987542111 12 13344444445544 4578999999987 455566
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHHH-HHHHHHhh-----CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEE
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKH-----APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIA 271 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~-----~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (607)
..++..+|++++|+|++++.+..... +...+... ..+.|+++|+||+|+...+....+.....+...++..+++
T Consensus 68 ~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e 147 (201)
T cd04107 68 RVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFE 147 (201)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEE
Confidence 77899999999999999877766532 22333221 2468999999999997544444455555556666557899
Q ss_pred eecCCCCChHHHHHHhccchHH
Q 007334 272 ISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 272 iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
+||++|.|+++++++|.+.+..
T Consensus 148 ~Sak~~~~v~e~f~~l~~~l~~ 169 (201)
T cd04107 148 TSAKEGINIEEAMRFLVKNILA 169 (201)
T ss_pred EeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999887654
No 64
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.84 E-value=5.3e-20 Score=173.23 Aligned_cols=157 Identities=19% Similarity=0.253 Sum_probs=114.4
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|++||.+|||||||+|++++.+........ .+.+.....+...+ ..+.+|||||.. ++....
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t---~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~ 70 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT---IGVEFGARMITIDGKQIKLQIWDTAGQE----------SFRSIT 70 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCc---cceeEEEEEEEECCEEEEEEEEECCCcH----------HHHHHH
Confidence 468999999999999999999987653332211 23333333334443 579999999976 556667
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhh----CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEee
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH----APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAIS 273 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~----~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iS 273 (607)
..+++.+|++++|+|++++.+..+ +..|+... .++.|+++|+||+|+........+.....+...+. .++++|
T Consensus 71 ~~~~~~~d~il~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~S 147 (168)
T cd01866 71 RSYYRGAAGALLVYDITRRETFNH--LTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGL-IFMETS 147 (168)
T ss_pred HHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCC-EEEEEe
Confidence 788899999999999997665554 44555432 35789999999999986544444444444555565 789999
Q ss_pred cCCCCChHHHHHHhccchH
Q 007334 274 AETGLGMTELYEALRPSVE 292 (607)
Q Consensus 274 A~~g~gi~eL~~~i~~~l~ 292 (607)
|++|+|++++++.+.+.+.
T Consensus 148 a~~~~~i~~~~~~~~~~~~ 166 (168)
T cd01866 148 AKTASNVEEAFINTAKEIY 166 (168)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999998876553
No 65
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.84 E-value=2.6e-20 Score=176.94 Aligned_cols=155 Identities=21% Similarity=0.263 Sum_probs=105.9
Q ss_pred EEEEecCCCCchhHHHHHhhccceeee--------cc------CCCCceeeeeEEEEe-----eeCCeeEEEecCCCCcc
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALV--------YN------TPDDHVTRDIREGLA-----KLGDLRFKVLDSAGLET 182 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v--------~~------~~~~~~T~~~~~~~~-----~~~~~~~~liDTpG~~~ 182 (607)
+|++||.+|||||||+++|++....+. .+ ..+ +|........ ...+..+.+|||||+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g--~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~- 78 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERG--ITIKAQTVRLNYKAKDGQEYLLNLIDTPGHV- 78 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCC--CeEecceEEEEEecCCCCcEEEEEEECCCCh-
Confidence 699999999999999999997532111 01 112 3333222222 2245678999999998
Q ss_pred ccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHH
Q 007334 183 EATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESL 262 (607)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~ 262 (607)
++...+..++..+|++|+|+|++++.+..+......+... ++|+++|+||+|+...... ........
T Consensus 79 ---------~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~--~~~iiiv~NK~Dl~~~~~~--~~~~~~~~ 145 (179)
T cd01890 79 ---------DFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALEN--NLEIIPVINKIDLPSADPE--RVKQQIED 145 (179)
T ss_pred ---------hhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHc--CCCEEEEEECCCCCcCCHH--HHHHHHHH
Confidence 4555667788999999999999988776665433333333 7899999999998643211 11112222
Q ss_pred hcCC--CCcEEeecCCCCChHHHHHHhccchH
Q 007334 263 MLGF--GDPIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 263 ~~~~--~~~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
.+++ .+++++||++|.|+++|++.|.+.++
T Consensus 146 ~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 146 VLGLDPSEAILVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred HhCCCcccEEEeeccCCCCHHHHHHHHHhhCC
Confidence 3343 25799999999999999999987653
No 66
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.84 E-value=4.6e-20 Score=171.71 Aligned_cols=154 Identities=20% Similarity=0.227 Sum_probs=108.6
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.+|||||||+|+|++..+. ..... ++.+.......+++ ..+.+|||||+. ++.....
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~l~~ 67 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFV--DEYDP--TIEDSYRKQVVIDGETCLLDILDTAGQE----------EYSAMRD 67 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc--CCcCC--cchheEEEEEEECCEEEEEEEEECCCCc----------chHHHHH
Confidence 47999999999999999999987642 22222 33343344444454 457889999987 4555666
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHH-HHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
.++..+|++++|+|+++..+..+.. +...+.+. ..+.|+++|+||+|+... ..............+. +++++||+
T Consensus 68 ~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~ 145 (162)
T cd04138 68 QYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAAR-TVSSRQGQDLAKSYGI-PYIETSAK 145 (162)
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc-eecHHHHHHHHHHhCC-eEEEecCC
Confidence 7889999999999999866555422 33333332 247899999999998763 2223333334444555 78999999
Q ss_pred CCCChHHHHHHhccc
Q 007334 276 TGLGMTELYEALRPS 290 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~ 290 (607)
+|.|++++++.|.+.
T Consensus 146 ~~~gi~~l~~~l~~~ 160 (162)
T cd04138 146 TRQGVEEAFYTLVRE 160 (162)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999998754
No 67
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.84 E-value=1.2e-20 Score=196.93 Aligned_cols=146 Identities=27% Similarity=0.362 Sum_probs=111.3
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEE-cCeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEY-QGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
.++|+++|+||||||||+|+|++.+ ..+.+.+|+|+|+....+.+ ++..+.||||||+.+..+....+. ...+...
T Consensus 189 ~~~ValvG~~NvGKSSLln~L~~~~-~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~--f~~tle~ 265 (351)
T TIGR03156 189 VPTVALVGYTNAGKSTLFNALTGAD-VYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAA--FRATLEE 265 (351)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCc-eeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHH--HHHHHHH
Confidence 4799999999999999999999876 77889999999999888888 578999999999854322211222 2445667
Q ss_pred HhhccEEEEEeccchhh----------HH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEVR----------AV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 403 i~~ad~~llViD~~~~~----------~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
+..||++|+|+|++++. .. ..++|+++|+||+|+.+... + . .... ...+
T Consensus 266 ~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~-------v----~-~~~~-----~~~~ 328 (351)
T TIGR03156 266 VREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPR-------I----E-RLEE-----GYPE 328 (351)
T ss_pred HHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHh-------H----H-HHHh-----CCCC
Confidence 88999999999998751 11 12789999999999975311 1 0 0100 1246
Q ss_pred EEEcccCCCCCHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVID 489 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~ 489 (607)
++++||++|.|++++++.|.+
T Consensus 329 ~i~iSAktg~GI~eL~~~I~~ 349 (351)
T TIGR03156 329 AVFVSAKTGEGLDLLLEAIAE 349 (351)
T ss_pred EEEEEccCCCCHHHHHHHHHh
Confidence 899999999999999988765
No 68
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.84 E-value=5.8e-20 Score=172.52 Aligned_cols=155 Identities=18% Similarity=0.256 Sum_probs=113.1
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.+|||||||++++++.++. ...+. ++..+.....+..++ .++.+|||||+. ++.....
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~--~~~~~-t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~ 69 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFM--ADCPH-TIGVEFGTRIIEVNGQKIKLQIWDTAGQE----------RFRAVTR 69 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC--CCCCc-ccceeEEEEEEEECCEEEEEEEEECCCcH----------HHHHHHH
Confidence 58999999999999999999987642 22222 122233223334444 478999999987 5666667
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHHHHHHHHh---h-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeec
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRK---H-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISA 274 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~---~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA 274 (607)
.+++.+|++++|+|++++.+... +..|+.. . .++.|+++|+||+|+........+.....+...+. +++++||
T Consensus 70 ~~~~~~~~~ilv~d~~~~~s~~~--~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~Sa 146 (166)
T cd04122 70 SYYRGAAGALMVYDITRRSTYNH--LSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGL-LFLECSA 146 (166)
T ss_pred HHhcCCCEEEEEEECCCHHHHHH--HHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCC-EEEEEEC
Confidence 78999999999999998766554 3345443 2 34689999999999987655544555555555565 7899999
Q ss_pred CCCCChHHHHHHhccch
Q 007334 275 ETGLGMTELYEALRPSV 291 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~~l 291 (607)
++|.|+++++..+...+
T Consensus 147 ~~~~~i~e~f~~l~~~~ 163 (166)
T cd04122 147 KTGENVEDAFLETAKKI 163 (166)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999887654
No 69
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.84 E-value=4.9e-20 Score=175.33 Aligned_cols=159 Identities=20% Similarity=0.202 Sum_probs=113.1
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee------------CCeeEEEecCCCCccccCch
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL------------GDLRFKVLDSAGLETEATSG 187 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~------------~~~~~~liDTpG~~~~~~~~ 187 (607)
..+|+++|.+|||||||++++++..+... ..+ +++.+.....+.+ ....+.+|||||++
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~-~~~--t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~------ 74 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNPK-FIT--TVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQE------ 74 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCcc-CCC--ccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChH------
Confidence 46899999999999999999998654211 111 1223333222222 23678999999987
Q ss_pred hHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhc
Q 007334 188 SILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLML 264 (607)
Q Consensus 188 ~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~ 264 (607)
++...+..+++.+|++++|+|++++.+..+. .+...+... .++.|+++|+||+|+...+....+.....+...
T Consensus 75 ----~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~ 150 (180)
T cd04127 75 ----RFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKY 150 (180)
T ss_pred ----HHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHc
Confidence 5666677889999999999999986665552 233333332 246799999999999865544444455555566
Q ss_pred CCCCcEEeecCCCCChHHHHHHhccchH
Q 007334 265 GFGDPIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 265 ~~~~~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
+. +++++||++|.|++++++.|.+.+.
T Consensus 151 ~~-~~~e~Sak~~~~v~~l~~~l~~~~~ 177 (180)
T cd04127 151 GI-PYFETSAATGTNVEKAVERLLDLVM 177 (180)
T ss_pred CC-eEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 66 7899999999999999999986553
No 70
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.84 E-value=4.2e-20 Score=173.03 Aligned_cols=156 Identities=17% Similarity=0.215 Sum_probs=111.0
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.+|||||||+++++.... +...+. ++.+.....+..++ ..+.+|||||+. ++.....
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~--~~~~~~--t~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~ 67 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIF--VEKYDP--TIEDSYRKQVEVDGQQCMLEILDTAGTE----------QFTAMRD 67 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCC--CcccCC--cchheEEEEEEECCEEEEEEEEECCCcc----------cchhHHH
Confidence 4799999999999999999996543 233332 44444444455554 456799999987 4555666
Q ss_pred HHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
.++..+|++++|+|.++..+..+. .+...+... ..+.|+++|+||+|+..................+. +++++||+
T Consensus 68 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 146 (164)
T cd04175 68 LYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGC-AFLETSAK 146 (164)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCC-EEEEeeCC
Confidence 788999999999999877665542 233333221 35789999999999976544333333333344554 78999999
Q ss_pred CCCChHHHHHHhccch
Q 007334 276 TGLGMTELYEALRPSV 291 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l 291 (607)
+|.|+++++++|.+.+
T Consensus 147 ~~~~v~~~~~~l~~~l 162 (164)
T cd04175 147 AKINVNEIFYDLVRQI 162 (164)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999987654
No 71
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.84 E-value=5.9e-20 Score=172.68 Aligned_cols=158 Identities=19% Similarity=0.277 Sum_probs=112.5
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+++|.+|||||||+|++++.++.... .+. .+.+.....+...+ ..+.+|||||+. .+....
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~-~~t--~~~~~~~~~~~~~~~~~~l~l~D~~g~~----------~~~~~~ 69 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSF-IST--IGIDFKIRTIELDGKKIKLQIWDTAGQE----------RFRTIT 69 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCccc-ccC--ccceEEEEEEEECCEEEEEEEEeCCchH----------HHHHHH
Confidence 468999999999999999999987642211 221 23333334444444 578999999987 444555
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..+++.||++++|+|++++.+..+. .+...+... ..+.|+++|+||+|+........+.....+...+. +++++||+
T Consensus 70 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 148 (167)
T cd01867 70 TAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGI-KFLETSAK 148 (167)
T ss_pred HHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCC-EEEEEeCC
Confidence 6788999999999999887665542 222223332 24689999999999986544444444444555566 68999999
Q ss_pred CCCChHHHHHHhccch
Q 007334 276 TGLGMTELYEALRPSV 291 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l 291 (607)
+|.|++++++.|.+.+
T Consensus 149 ~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 149 ANINVEEAFFTLAKDI 164 (167)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998765
No 72
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.84 E-value=6.2e-20 Score=176.62 Aligned_cols=159 Identities=18% Similarity=0.219 Sum_probs=112.7
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
+|+++|.+|||||||++++++..+.. ...+. +++.+.....+.+++ ..+.||||||+. ++...+..
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~-~~~~~-t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~ 69 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLN-GNFIA-TVGIDFRNKVVTVDGVKVKLQIWDTAGQE----------RFRSVTHA 69 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCc-cCcCC-cccceeEEEEEEECCEEEEEEEEeCCCcH----------HHHHhhHH
Confidence 69999999999999999999876421 11221 133333333334443 578999999986 55555677
Q ss_pred HhhccCEEEEEEecCCCCCHhHH-HHHHHHHhhC-CCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKHA-PQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETG 277 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~~-~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g 277 (607)
++..+|++++|+|+++..+..+. .+...+.+.. .+.|+++|+||+|+...+.....+........+. +++++||++|
T Consensus 70 ~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~-~~~e~Sa~~~ 148 (191)
T cd04112 70 YYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGV-PFMETSAKTG 148 (191)
T ss_pred HccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCC-eEEEEeCCCC
Confidence 88999999999999987665542 2334444432 3689999999999976444333344444445555 7899999999
Q ss_pred CChHHHHHHhccchHH
Q 007334 278 LGMTELYEALRPSVED 293 (607)
Q Consensus 278 ~gi~eL~~~i~~~l~~ 293 (607)
.|++++++.|.+.+.+
T Consensus 149 ~~v~~l~~~l~~~~~~ 164 (191)
T cd04112 149 LNVELAFTAVAKELKH 164 (191)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999887754
No 73
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.84 E-value=2.8e-20 Score=179.79 Aligned_cols=159 Identities=16% Similarity=0.163 Sum_probs=106.7
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||++++++.+.. ....|+++.+.....+.+++. .+.||||||+.+.....+.+.. .....+
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~-~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~--~~~~~~ 77 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFP-EEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWM--DPRFRG 77 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCC-cccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHH--HHHHhh
Confidence 47999999999999999999976532 233455554554445667774 5679999997654211111211 123456
Q ss_pred HhhccEEEEEeccchhh-----------HH------hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCC
Q 007334 403 LMRAHVVALVLDAEEVR-----------AV------EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVT 465 (607)
Q Consensus 403 i~~ad~~llViD~~~~~-----------~~------~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (607)
+..||++|+|+|++++. .. ..++|+++|+||+|+...+.... + +.........
T Consensus 78 ~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~--~--------~~~~~~~~~~ 147 (198)
T cd04142 78 LRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPR--H--------VLSVLVRKSW 147 (198)
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccH--H--------HHHHHHHHhc
Confidence 78999999999998760 11 24689999999999965421110 0 1111111224
Q ss_pred CCCEEEcccCCCCCHHHHHHHHHHHHHHHhc
Q 007334 466 GIPVVFTSALEGRGRIAVMHQVIDTYQKWCL 496 (607)
Q Consensus 466 ~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~ 496 (607)
+++++++||++|.|++++|+.+++.+..+.+
T Consensus 148 ~~~~~e~Sak~g~~v~~lf~~i~~~~~~~~~ 178 (198)
T cd04142 148 KCGYLECSAKYNWHILLLFKELLISATTRGR 178 (198)
T ss_pred CCcEEEecCCCCCCHHHHHHHHHHHhhccCC
Confidence 6799999999999999999999876654443
No 74
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.84 E-value=6.5e-20 Score=189.89 Aligned_cols=168 Identities=27% Similarity=0.327 Sum_probs=120.5
Q ss_pred ccccCCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC-eeEEEecCCCCccccCchhHHHHH
Q 007334 115 IDINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD-LRFKVLDSAGLETEATSGSILDRT 193 (607)
Q Consensus 115 ~~~~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~-~~~~liDTpG~~~~~~~~~~~~~~ 193 (607)
+..+.++.|+|||+||||||||+|+|++.+. .+.++|+ +|++...+.+.+.+ .++.+|||||+........ ..
T Consensus 152 lelk~~adV~lvG~pnaGKSTLl~~lt~~~~-~va~y~f--TT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~---gL 225 (329)
T TIGR02729 152 LELKLLADVGLVGLPNAGKSTLISAVSAAKP-KIADYPF--TTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGA---GL 225 (329)
T ss_pred EEeeccccEEEEcCCCCCHHHHHHHHhcCCc-cccCCCC--CccCCEEEEEEeCCceEEEEEeCCCcccCCcccc---cH
Confidence 3445578999999999999999999998764 3677777 89999999888876 8999999999975432211 12
Q ss_pred HHHHHHHhhccCEEEEEEecCCC---CCHhHH-HHHHHHHhh---CCCCcEEEEecCCCcccCCcCcHHHHHHHH-HhcC
Q 007334 194 AGMTANVLAKTQFAIFMIDVRSG---LHPLDL-EVGKWLRKH---APQIKPIVAMNKCESLHNGTGSLAGAAAES-LMLG 265 (607)
Q Consensus 194 ~~~~~~~~~~ad~vl~VvD~s~~---~~~~~~-~~~~~l~~~---~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~-~~~~ 265 (607)
....+..++.+|++++|+|+++. ....+. .+.+.|... ..++|+++|+||+|+..... .......+ ...+
T Consensus 226 g~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~--~~~~~~~l~~~~~ 303 (329)
T TIGR02729 226 GHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE--LAELLKELKKALG 303 (329)
T ss_pred HHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH--HHHHHHHHHHHcC
Confidence 23345567889999999999875 222332 233444432 13689999999999976422 22222222 2334
Q ss_pred CCCcEEeecCCCCChHHHHHHhccch
Q 007334 266 FGDPIAISAETGLGMTELYEALRPSV 291 (607)
Q Consensus 266 ~~~~i~iSA~~g~gi~eL~~~i~~~l 291 (607)
. +++++||++++|+++|++.|.+.+
T Consensus 304 ~-~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 304 K-PVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred C-cEEEEEccCCcCHHHHHHHHHHHh
Confidence 4 789999999999999999987654
No 75
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.84 E-value=2.6e-20 Score=199.73 Aligned_cols=162 Identities=22% Similarity=0.258 Sum_probs=121.6
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHh
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLM 404 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~ 404 (607)
..|+|||.||||||||+|+|++.. ..++++|+||+++..+.+.+.+.++.||||||+.+.... . ..+ ....++++.
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~ak-pkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~-g-~gL-g~~fLrhie 235 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAK-PKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASE-G-KGL-GLDFLRHIE 235 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCC-ccccccCcccccceEEEEEECCeEEEEEECCCCccccch-h-hHH-HHHHHHHHH
Confidence 579999999999999999999874 567899999999999999999999999999998754211 0 111 234567888
Q ss_pred hccEEEEEeccch------h---------hH--------------HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHH
Q 007334 405 RAHVVALVLDAEE------V---------RA--------------VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQ 455 (607)
Q Consensus 405 ~ad~~llViD~~~------~---------~~--------------~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~ 455 (607)
+||++|+|+|++. + .. ...++|+|||+||+|+.+... ..+.+. .
T Consensus 236 radvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~e---l~e~l~----~ 308 (500)
T PRK12296 236 RCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARE---LAEFVR----P 308 (500)
T ss_pred hcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHH---HHHHHH----H
Confidence 9999999999963 1 00 123689999999999975421 111111 1
Q ss_pred HHHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHHHHHHhcCCChHH
Q 007334 456 EIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSR 502 (607)
Q Consensus 456 ~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~~ 502 (607)
.+.. .+.++++|||+++.|+++|+.++.+.+..+....++..
T Consensus 309 ~l~~-----~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~r~~~~~~~ 350 (500)
T PRK12296 309 ELEA-----RGWPVFEVSAASREGLRELSFALAELVEEARAAEPEAE 350 (500)
T ss_pred HHHH-----cCCeEEEEECCCCCCHHHHHHHHHHHHHhhhcccCccc
Confidence 2211 15689999999999999999999998887765554433
No 76
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.84 E-value=2.4e-20 Score=201.41 Aligned_cols=150 Identities=35% Similarity=0.494 Sum_probs=121.1
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
.+++|+++|.||||||||+|+|++.+...+++.+|+|+|.....+.+++..+.+|||||+.+.. ...+.+...++..+
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~--~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETD--DEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCc--cHHHHHHHHHHHHH
Confidence 3589999999999999999999998877899999999999999999999999999999986431 22333444567778
Q ss_pred HhhccEEEEEeccchh------hHH--hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEccc
Q 007334 403 LMRAHVVALVLDAEEV------RAV--EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSA 474 (607)
Q Consensus 403 i~~ad~~llViD~~~~------~~~--~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA 474 (607)
+..||++++|+|++++ ... ..++|+++|+||+|+.+.... . .....+++++||
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~~l~~~~~~piiiV~NK~DL~~~~~~-----------~--------~~~~~~~i~iSA 352 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDEILEELKDKPVIVVLNKADLTGEIDL-----------E--------EENGKPVIRISA 352 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHHHHHhcCCCCcEEEEEhhhccccchh-----------h--------hccCCceEEEEe
Confidence 8999999999999875 111 257899999999999754211 0 112458999999
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q 007334 475 LEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 475 ~~g~gv~~l~~~i~~~~~~ 493 (607)
++|.|++++++.+.+.+..
T Consensus 353 ktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 353 KTGEGIDELREAIKELAFG 371 (449)
T ss_pred eCCCCHHHHHHHHHHHHhh
Confidence 9999999999999887654
No 77
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.84 E-value=8.3e-20 Score=195.83 Aligned_cols=171 Identities=22% Similarity=0.255 Sum_probs=122.1
Q ss_pred ccccCCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHH
Q 007334 115 IDINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTA 194 (607)
Q Consensus 115 ~~~~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~ 194 (607)
+..+.+..|+|||+||||||||+|+|++.+.. ++++|+ +|++...+.+.+.+..|.+|||||+........ ...
T Consensus 154 leLk~~adV~LVG~PNAGKSTLln~Ls~akpk-Iadypf--TTl~P~lGvv~~~~~~f~laDtPGliegas~g~---gLg 227 (500)
T PRK12296 154 LELKSVADVGLVGFPSAGKSSLISALSAAKPK-IADYPF--TTLVPNLGVVQAGDTRFTVADVPGLIPGASEGK---GLG 227 (500)
T ss_pred EEecccceEEEEEcCCCCHHHHHHHHhcCCcc-ccccCc--ccccceEEEEEECCeEEEEEECCCCccccchhh---HHH
Confidence 34455789999999999999999999987654 577888 999999999999999999999999974332211 112
Q ss_pred HHHHHHhhccCEEEEEEecCCCC----CHhHHH-HHHHHHhh------------CCCCcEEEEecCCCcccCCcCcHHHH
Q 007334 195 GMTANVLAKTQFAIFMIDVRSGL----HPLDLE-VGKWLRKH------------APQIKPIVAMNKCESLHNGTGSLAGA 257 (607)
Q Consensus 195 ~~~~~~~~~ad~vl~VvD~s~~~----~~~~~~-~~~~l~~~------------~~~~p~ilV~NK~D~~~~~~~~~~~~ 257 (607)
...+.+++.+|++|||+|+++.. ...+.+ +.+.|... ..++|+|+|+||+|+...... .+..
T Consensus 228 ~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el-~e~l 306 (500)
T PRK12296 228 LDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAREL-AEFV 306 (500)
T ss_pred HHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHH-HHHH
Confidence 23456788999999999997521 222211 22222211 136899999999998753221 1111
Q ss_pred HHHHHhcCCCCcEEeecCCCCChHHHHHHhccchHH
Q 007334 258 AAESLMLGFGDPIAISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 258 ~~~~~~~~~~~~i~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
...+...++ +++++||++++|+++|+++|.+.+..
T Consensus 307 ~~~l~~~g~-~Vf~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 307 RPELEARGW-PVFEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred HHHHHHcCC-eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 223334455 78999999999999999999887754
No 78
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.84 E-value=8e-20 Score=198.18 Aligned_cols=169 Identities=23% Similarity=0.370 Sum_probs=130.0
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHH-HHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDR-TAGMTA 198 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~-~~~~~~ 198 (607)
..+|+++|++|||||||+|+|++.+...+++.++ +|++.....+..++..+.+|||||+............ ....+.
T Consensus 172 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~g--tt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~ 249 (429)
T TIGR03594 172 PIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAG--TTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTL 249 (429)
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCC--ceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHH
Confidence 4689999999999999999999988777888888 9999988888888889999999999744332211112 223456
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHH----HHhcCCCCcEEeec
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAE----SLMLGFGDPIAISA 274 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~----~~~~~~~~~i~iSA 274 (607)
.++..||++++|+|++++.+..+..+...+.+. ++|+++|+||+|+.... ......... +...+..+++++||
T Consensus 250 ~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~--~~~iiiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~vi~~SA 326 (429)
T TIGR03594 250 KAIERADVVLLVLDATEGITEQDLRIAGLILEA--GKALVIVVNKWDLVKDE-KTREEFKKELRRKLPFLDFAPIVFISA 326 (429)
T ss_pred HHHHhCCEEEEEEECCCCccHHHHHHHHHHHHc--CCcEEEEEECcccCCCH-HHHHHHHHHHHHhcccCCCCceEEEeC
Confidence 788999999999999999999988777777665 78999999999998321 111111111 12223347899999
Q ss_pred CCCCChHHHHHHhccchHH
Q 007334 275 ETGLGMTELYEALRPSVED 293 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~~l~~ 293 (607)
++|.|++++++.+.+.+..
T Consensus 327 ~~g~~v~~l~~~i~~~~~~ 345 (429)
T TIGR03594 327 LTGQGVDKLLDAIDEVYEN 345 (429)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999876644
No 79
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.84 E-value=2.5e-20 Score=179.24 Aligned_cols=152 Identities=28% Similarity=0.336 Sum_probs=110.5
Q ss_pred HHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHH-----HhcC--
Q 007334 193 TAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAES-----LMLG-- 265 (607)
Q Consensus 193 ~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~-----~~~~-- 265 (607)
+...+..+++.+|++++|+|++++....+..+ +. ...++|+++|+||+|+...... ........ ...+
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l--~~--~~~~~~~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~ 98 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGSLIPRL--RL--FGGNNPVILVGNKIDLLPKDKN-LVRIKNWLRAKAAAGLGLK 98 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCccchhH--HH--hcCCCcEEEEEEchhcCCCCCC-HHHHHHHHHHHHHhhcCCC
Confidence 35666778899999999999998654444333 11 1236899999999999754321 11111111 1222
Q ss_pred CCCcEEeecCCCCChHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhh
Q 007334 266 FGDPIAISAETGLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALL 345 (607)
Q Consensus 266 ~~~~i~iSA~~g~gi~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~ 345 (607)
..+++++||++|+|+++|++.|.+.++. ...++++|.||||||||+|+|+
T Consensus 99 ~~~i~~vSA~~~~gi~eL~~~l~~~l~~------------------------------~~~~~~~G~~nvGKStliN~l~ 148 (190)
T cd01855 99 PKDVILISAKKGWGVEELINAIKKLAKK------------------------------GGDVYVVGATNVGKSTLINALL 148 (190)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHHhhc------------------------------CCcEEEEcCCCCCHHHHHHHHH
Confidence 2367999999999999999998766531 2479999999999999999999
Q ss_pred cCC--------ceeecCCCCceeeeEEEEEEEcCeEEEEEecCCC
Q 007334 346 QED--------RVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGW 382 (607)
Q Consensus 346 ~~~--------~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~ 382 (607)
+.. ...++..||||++.....+. ..+.|+||||+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~---~~~~~~DtPG~ 190 (190)
T cd01855 149 KKDNGKKKLKDLLTTSPIPGTTLDLIKIPLG---NGKKLYDTPGI 190 (190)
T ss_pred HhcccccccccccccCCCCCeeeeeEEEecC---CCCEEEeCcCC
Confidence 753 24678899999998766552 25799999995
No 80
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.84 E-value=1.5e-19 Score=175.11 Aligned_cols=160 Identities=19% Similarity=0.244 Sum_probs=115.3
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+++|.+|||||||++++++..+.. ...+ +.+.+.....+...+ ..+.||||||+. .+....
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~l~l~D~~G~~----------~~~~~~ 72 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSG-SYIT--TIGVDFKIRTVEINGERVKLQIWDTAGQE----------RFRTIT 72 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCC-CcCc--cccceeEEEEEEECCEEEEEEEEeCCCch----------hHHHHH
Confidence 5789999999999999999999876421 1112 133344444444444 478999999987 455566
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAET 276 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~ 276 (607)
..++..+|++++|+|++++.+..+. .+...+.......|+++|+||+|+..................+. +++++||++
T Consensus 73 ~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~ 151 (199)
T cd04110 73 STYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGI-SLFETSAKE 151 (199)
T ss_pred HHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHHHcCC-EEEEEECCC
Confidence 7788999999999999987665542 23344444455789999999999986544433444444445554 789999999
Q ss_pred CCChHHHHHHhccchHH
Q 007334 277 GLGMTELYEALRPSVED 293 (607)
Q Consensus 277 g~gi~eL~~~i~~~l~~ 293 (607)
|.|+++++++|...+..
T Consensus 152 ~~gi~~lf~~l~~~~~~ 168 (199)
T cd04110 152 NINVEEMFNCITELVLR 168 (199)
T ss_pred CcCHHHHHHHHHHHHHH
Confidence 99999999999886644
No 81
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.84 E-value=3.6e-20 Score=179.14 Aligned_cols=147 Identities=23% Similarity=0.283 Sum_probs=103.7
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+.|+++|.+|||||||++++.... +.....+.++.+.....+.+++ ..+.||||||..++ .. ....+
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~-f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~---------~~-l~~~y 69 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDT-FCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERF---------NS-ITSAY 69 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCC-CCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhh---------HH-HHHHH
Confidence 368999999999999999999653 3222334445566666677777 46679999995433 21 23467
Q ss_pred HhhccEEEEEeccchhh----------H----HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCC-CCCCC
Q 007334 403 LMRAHVVALVLDAEEVR----------A----VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIP-QVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~~----------~----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 467 (607)
+++||++|+|+|+++.. . ...+.|+++|+||+|+.+..... .+..+.++ ...+.
T Consensus 70 ~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~-----------~~~~~~~a~~~~~~ 138 (202)
T cd04120 70 YRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREIS-----------RQQGEKFAQQITGM 138 (202)
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccC-----------HHHHHHHHHhcCCC
Confidence 88999999999999861 1 12468999999999997542211 11111111 12256
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
+++++||++|.||+++|+++.+.+..
T Consensus 139 ~~~etSAktg~gV~e~F~~l~~~~~~ 164 (202)
T cd04120 139 RFCEASAKDNFNVDEIFLKLVDDILK 164 (202)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 89999999999999999999887643
No 82
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.84 E-value=1.3e-19 Score=170.31 Aligned_cols=166 Identities=23% Similarity=0.393 Sum_probs=120.3
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHH-HHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRT-AGMTA 198 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~-~~~~~ 198 (607)
.++|+++|.+|+|||||+|+|++.......+.++ +|++........++..+.+|||||+............+ .....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAG--TTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCC--CccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 3689999999999999999999987666666676 78887777777788889999999997442211111111 12334
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHH-hc---CCCCcEEeec
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESL-ML---GFGDPIAISA 274 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~-~~---~~~~~i~iSA 274 (607)
..+..+|++++|+|++++.+.....+...+... +.|+++|+||+|+................ .+ +..+++++||
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~--~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 157 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLRIAGLILEE--GKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISA 157 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhc--CCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEec
Confidence 567899999999999998887776666655544 68999999999998653211221111221 12 2347899999
Q ss_pred CCCCChHHHHHHhcc
Q 007334 275 ETGLGMTELYEALRP 289 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~ 289 (607)
++|.|++++++.+..
T Consensus 158 ~~~~~i~~~~~~l~~ 172 (174)
T cd01895 158 LTGQGVDKLFDAIDE 172 (174)
T ss_pred cCCCCHHHHHHHHHH
Confidence 999999999998764
No 83
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.84 E-value=7.4e-20 Score=193.18 Aligned_cols=169 Identities=25% Similarity=0.290 Sum_probs=121.0
Q ss_pred ccCCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC-eeEEEecCCCCccccCchhHHHHHHH
Q 007334 117 INLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD-LRFKVLDSAGLETEATSGSILDRTAG 195 (607)
Q Consensus 117 ~~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~-~~~~liDTpG~~~~~~~~~~~~~~~~ 195 (607)
.+.+..|+|||+||||||||+|+|++.+. .+++.|+ ||+....+.+...+ ..+.++||||+.........+ ..
T Consensus 156 lk~iadValVG~PNaGKSTLln~Lt~~k~-~vs~~p~--TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~L---g~ 229 (390)
T PRK12298 156 LKLLADVGLLGLPNAGKSTFIRAVSAAKP-KVADYPF--TTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGL---GI 229 (390)
T ss_pred eeccccEEEEcCCCCCHHHHHHHHhCCcc-cccCCCC--CccCcEEEEEEeCCCcEEEEEeCCCccccccchhhH---HH
Confidence 34467899999999999999999998764 6788888 99999999988765 569999999998543221111 12
Q ss_pred HHHHHhhccCEEEEEEecCC---CCCHhH-HHHHHHHHhhC---CCCcEEEEecCCCcccCCcCcHHHHHHHH-HhcCCC
Q 007334 196 MTANVLAKTQFAIFMIDVRS---GLHPLD-LEVGKWLRKHA---PQIKPIVAMNKCESLHNGTGSLAGAAAES-LMLGFG 267 (607)
Q Consensus 196 ~~~~~~~~ad~vl~VvD~s~---~~~~~~-~~~~~~l~~~~---~~~p~ilV~NK~D~~~~~~~~~~~~~~~~-~~~~~~ 267 (607)
..+.+++.+|++++|+|++. .....+ ..+.+.+.... .++|+++|+||+|+..... .......+ ...+..
T Consensus 230 ~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~e--l~~~l~~l~~~~~~~ 307 (390)
T PRK12298 230 RFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEE--AEERAKAIVEALGWE 307 (390)
T ss_pred HHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHH--HHHHHHHHHHHhCCC
Confidence 23457899999999999883 222222 23445554431 3689999999999875322 12222222 233432
Q ss_pred -CcEEeecCCCCChHHHHHHhccchHH
Q 007334 268 -DPIAISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 268 -~~i~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
+++++||+++.|+++|++.|.+.+++
T Consensus 308 ~~Vi~ISA~tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 308 GPVYLISAASGLGVKELCWDLMTFIEE 334 (390)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHhhh
Confidence 67999999999999999999887754
No 84
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.84 E-value=5.3e-20 Score=197.59 Aligned_cols=152 Identities=32% Similarity=0.392 Sum_probs=119.4
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
.+++|+++|+||||||||+|+|++.+..+++++||||+|.....+.++|..+.+|||||+.+.. ...+.....++..+
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~--~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHA--DFVERLGIEKSFKA 279 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccch--hHHHHHHHHHHHHH
Confidence 4689999999999999999999998878899999999999999999999999999999986542 11233444566788
Q ss_pred HhhccEEEEEeccchhh---------HHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcc
Q 007334 403 LMRAHVVALVLDAEEVR---------AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTS 473 (607)
Q Consensus 403 i~~ad~~llViD~~~~~---------~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iS 473 (607)
++.||++++|+|++++. ....++|+|+|+||+|+.+. .. +. + ....+.+++++|
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~~l~~~~~~~~piIlV~NK~Dl~~~-~~----~~--------~----~~~~~~~~~~vS 342 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDFLIIDLNKSKKPFILVLNKIDLKIN-SL----EF--------F----VSSKVLNSSNLS 342 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHHHHHHHhhCCCCEEEEEECccCCCc-ch----hh--------h----hhhcCCceEEEE
Confidence 89999999999998751 11247899999999999643 11 11 1 111246889999
Q ss_pred cCCCCCHHHHHHHHHHHHHHH
Q 007334 474 ALEGRGRIAVMHQVIDTYQKW 494 (607)
Q Consensus 474 A~~g~gv~~l~~~i~~~~~~~ 494 (607)
|++ .|++++++.+.+.+.+.
T Consensus 343 ak~-~gI~~~~~~L~~~i~~~ 362 (442)
T TIGR00450 343 AKQ-LKIKALVDLLTQKINAF 362 (442)
T ss_pred Eec-CCHHHHHHHHHHHHHHH
Confidence 998 69999999888766543
No 85
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.83 E-value=6e-20 Score=171.71 Aligned_cols=155 Identities=19% Similarity=0.163 Sum_probs=109.3
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.+|||||||++++...... ..... +..+.....+..++ ..+.+|||||++ ++.....
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~ 67 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFI--EKYDP--TIEDFYRKEIEVDSSPSVLEILDTAGTE----------QFASMRD 67 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--CCCCC--chhheEEEEEEECCEEEEEEEEECCCcc----------cccchHH
Confidence 47999999999999999999987542 22222 33334444444444 357899999987 3444555
Q ss_pred HHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
.++.++|++++|+|+++..+..+. .+..++.+. ..++|+++|+||+|+..................+. +++++||+
T Consensus 68 ~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 146 (163)
T cd04176 68 LYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGC-PFMETSAK 146 (163)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCC-EEEEecCC
Confidence 678999999999999987665552 244444443 24789999999999876444333333333344454 77999999
Q ss_pred CCCChHHHHHHhccc
Q 007334 276 TGLGMTELYEALRPS 290 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~ 290 (607)
+|.|++++++.+.+.
T Consensus 147 ~~~~v~~l~~~l~~~ 161 (163)
T cd04176 147 SKTMVNELFAEIVRQ 161 (163)
T ss_pred CCCCHHHHHHHHHHh
Confidence 999999999998754
No 86
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.83 E-value=8.5e-20 Score=198.20 Aligned_cols=168 Identities=24% Similarity=0.379 Sum_probs=131.0
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHH-HHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRT-AGMTA 198 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~-~~~~~ 198 (607)
..+|+++|++|||||||+|+|++.+...+++.++ +|++.....+...+..+.+|||||+............+ ...+.
T Consensus 173 ~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~g--tt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~ 250 (435)
T PRK00093 173 PIKIAIIGRPNVGKSSLINALLGEERVIVSDIAG--TTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTL 250 (435)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCceeecCCCC--ceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence 5799999999999999999999988888888888 99999888888889999999999987544332222222 23456
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHH----HHHHhcCCCCcEEeec
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAA----AESLMLGFGDPIAISA 274 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~----~~~~~~~~~~~i~iSA 274 (607)
.++..+|++|+|+|++++.+.++..+...+.+. ++|+++|+||+|+..... ..... ..+......+++++||
T Consensus 251 ~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~--~~~~ivv~NK~Dl~~~~~--~~~~~~~~~~~l~~~~~~~i~~~SA 326 (435)
T PRK00093 251 KAIERADVVLLVIDATEGITEQDLRIAGLALEA--GRALVIVVNKWDLVDEKT--MEEFKKELRRRLPFLDYAPIVFISA 326 (435)
T ss_pred HHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc--CCcEEEEEECccCCCHHH--HHHHHHHHHHhcccccCCCEEEEeC
Confidence 688999999999999999999998887777765 789999999999974321 11111 1112223447899999
Q ss_pred CCCCChHHHHHHhccchHH
Q 007334 275 ETGLGMTELYEALRPSVED 293 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~~l~~ 293 (607)
++|.|++++++.+.+....
T Consensus 327 ~~~~gv~~l~~~i~~~~~~ 345 (435)
T PRK00093 327 LTGQGVDKLLEAIDEAYEN 345 (435)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999998876654
No 87
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.83 E-value=7.5e-20 Score=173.48 Aligned_cols=155 Identities=14% Similarity=0.099 Sum_probs=109.6
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.+|||||||++++....+ ...... +..+.....+..++ ..+.||||+|++ ++.....
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f--~~~~~p--t~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~ 67 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKF--PSEYVP--TVFDNYAVTVMIGGEPYTLGLFDTAGQE----------DYDRLRP 67 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--CCCCCC--ceeeeeEEEEEECCEEEEEEEEECCCcc----------chhhhhh
Confidence 4799999999999999999998764 222222 33333333344455 578899999998 4444555
Q ss_pred HHhhccCEEEEEEecCCCCCHhHH--HHHHHHHhhCCCCcEEEEecCCCcccCC------------cCcHHHHHHHHHhc
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHNG------------TGSLAGAAAESLML 264 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~D~~~~~------------~~~~~~~~~~~~~~ 264 (607)
.++..+|++++|+|++++.+..+. .+...++...++.|+|+|+||+|+.... .+..++........
T Consensus 68 ~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~ 147 (175)
T cd01874 68 LSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDL 147 (175)
T ss_pred hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHh
Confidence 688999999999999988777653 2444454445578999999999986531 12222333334445
Q ss_pred CCCCcEEeecCCCCChHHHHHHhcc
Q 007334 265 GFGDPIAISAETGLGMTELYEALRP 289 (607)
Q Consensus 265 ~~~~~i~iSA~~g~gi~eL~~~i~~ 289 (607)
+...++++||++|.|++++++.+..
T Consensus 148 ~~~~~~e~SA~tg~~v~~~f~~~~~ 172 (175)
T cd01874 148 KAVKYVECSALTQKGLKNVFDEAIL 172 (175)
T ss_pred CCcEEEEecCCCCCCHHHHHHHHHH
Confidence 5346899999999999999998764
No 88
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.83 E-value=8.9e-20 Score=170.85 Aligned_cols=156 Identities=22% Similarity=0.240 Sum_probs=110.1
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC--CeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG--DLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
+|+++|.+|||||||+|+|++.+... ...+. ++.+.....+... ...+.+|||||.. .+......
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~-~~~~t--~~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~ 68 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVS-KYLPT--IGIDYGVKKVSVRNKEVRVNFFDLSGHP----------EYLEVRNE 68 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-CCCCc--cceeEEEEEEEECCeEEEEEEEECCccH----------HHHHHHHH
Confidence 79999999999999999999876522 12222 3344433344433 4678999999987 45556667
Q ss_pred HhhccCEEEEEEecCCCCCHhHH-HHHHHHHhhC------CCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEe
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKHA------PQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAI 272 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~~------~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~i 272 (607)
++..+|++|+|+|++++.+.... .+...+.+.. .+.|+++|+||+|+........+.........+. +++++
T Consensus 69 ~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~ 147 (168)
T cd04119 69 FYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGF-KYFET 147 (168)
T ss_pred HhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCC-eEEEE
Confidence 88999999999999987655442 2222232221 3689999999999975433334444444555565 78999
Q ss_pred ecCCCCChHHHHHHhccch
Q 007334 273 SAETGLGMTELYEALRPSV 291 (607)
Q Consensus 273 SA~~g~gi~eL~~~i~~~l 291 (607)
||++|.|++++++.|.+.+
T Consensus 148 Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 148 SACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 9999999999999987644
No 89
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.83 E-value=1.9e-19 Score=191.02 Aligned_cols=167 Identities=25% Similarity=0.266 Sum_probs=120.6
Q ss_pred cccCCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC-CeeEEEecCCCCccccCchhHHHHHH
Q 007334 116 DINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG-DLRFKVLDSAGLETEATSGSILDRTA 194 (607)
Q Consensus 116 ~~~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~~ 194 (607)
..+.++.|+|||+||||||||+|+|++.+.. +++.|+ +|++...+.+.+. +..+.+|||||+........ ...
T Consensus 154 elk~~adVglVG~pNaGKSTLLn~Lt~ak~k-Ia~ypf--TTl~PnlG~v~~~~~~~~~laD~PGliega~~~~---gLg 227 (424)
T PRK12297 154 ELKLLADVGLVGFPNVGKSTLLSVVSNAKPK-IANYHF--TTLVPNLGVVETDDGRSFVMADIPGLIEGASEGV---GLG 227 (424)
T ss_pred eecccCcEEEEcCCCCCHHHHHHHHHcCCCc-cccCCc--ceeceEEEEEEEeCCceEEEEECCCCcccccccc---hHH
Confidence 3445679999999999999999999988754 567787 9999999988877 78999999999975332211 122
Q ss_pred HHHHHHhhccCEEEEEEecCCC---CCHhH-HHHHHHHHhhC---CCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCC
Q 007334 195 GMTANVLAKTQFAIFMIDVRSG---LHPLD-LEVGKWLRKHA---PQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFG 267 (607)
Q Consensus 195 ~~~~~~~~~ad~vl~VvD~s~~---~~~~~-~~~~~~l~~~~---~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~ 267 (607)
...+..++.+++++||+|+++. ....+ ..+.++|.... .++|+++|+||+|+... ..........++ .
T Consensus 228 ~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~----~e~l~~l~~~l~-~ 302 (424)
T PRK12297 228 HQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA----EENLEEFKEKLG-P 302 (424)
T ss_pred HHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC----HHHHHHHHHHhC-C
Confidence 2335567889999999999764 22223 23455555432 36899999999997432 111222223344 3
Q ss_pred CcEEeecCCCCChHHHHHHhccchHH
Q 007334 268 DPIAISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 268 ~~i~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
+++++||++++|+++|++.|.+.+.+
T Consensus 303 ~i~~iSA~tgeGI~eL~~~L~~~l~~ 328 (424)
T PRK12297 303 KVFPISALTGQGLDELLYAVAELLEE 328 (424)
T ss_pred cEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 78999999999999999999876653
No 90
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.83 E-value=1.4e-19 Score=168.98 Aligned_cols=155 Identities=21% Similarity=0.303 Sum_probs=113.9
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
+|+++|.+|||||||+++|++..... ...+ +.+.+.....+...+ ..+.+|||||.. .+......
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~l~D~~G~~----------~~~~~~~~ 68 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSE-QYKS--TIGVDFKTKTIEVDGKRVKLQIWDTAGQE----------RFRSITSS 68 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC-CCCC--ceeeEEEEEEEEECCEEEEEEEEECCChH----------HHHHHHHH
Confidence 79999999999999999999876421 1122 244444444455555 578999999976 45566677
Q ss_pred HhhccCEEEEEEecCCCCCHhHHHHHHHHHhh----CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH----APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~----~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
++..+|++++|+|++++.+.+. +..|+... .++.|+++|+||+|+........+.........++ +++++||+
T Consensus 69 ~~~~~d~~ilv~d~~~~~s~~~--~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~ 145 (164)
T smart00175 69 YYRGAVGALLVYDITNRESFEN--LKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGL-PFFETSAK 145 (164)
T ss_pred HhCCCCEEEEEEECCCHHHHHH--HHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCC-eEEEEeCC
Confidence 8899999999999998766654 33454432 25789999999999876544343444444555666 68999999
Q ss_pred CCCChHHHHHHhccchH
Q 007334 276 TGLGMTELYEALRPSVE 292 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~ 292 (607)
+|.|++++++.|.+.+.
T Consensus 146 ~~~~i~~l~~~i~~~~~ 162 (164)
T smart00175 146 TNTNVEEAFEELAREIL 162 (164)
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999987664
No 91
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.83 E-value=6.4e-20 Score=170.54 Aligned_cols=153 Identities=21% Similarity=0.320 Sum_probs=112.7
Q ss_pred HHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeec
Q 007334 195 GMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISA 274 (607)
Q Consensus 195 ~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA 274 (607)
+.....++++|++++|+|++++....+.++..++... ++|+++|+||+|+.+... ...........+. +++++||
T Consensus 4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~--~~p~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~-~~~~iSa 78 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLEL--GKKLLIVLNKADLVPKEV--LEKWKSIKESEGI-PVVYVSA 78 (156)
T ss_pred HHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhC--CCcEEEEEEhHHhCCHHH--HHHHHHHHHhCCC-cEEEEEc
Confidence 3445667789999999999988776666666666544 689999999999864311 1111111122333 6799999
Q ss_pred CCCCChHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhcCCceeecC
Q 007334 275 ETGLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGP 354 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~ 354 (607)
++|.|+++|++.|.+.++. .....+++++|.+|+||||++|+|.+.....+++
T Consensus 79 ~~~~gi~~L~~~l~~~~~~---------------------------~~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~ 131 (156)
T cd01859 79 KERLGTKILRRTIKELAKI---------------------------DGKEGKVGVVGYPNVGKSSIINALKGRHSASTSP 131 (156)
T ss_pred cccccHHHHHHHHHHHHhh---------------------------cCCCcEEEEECCCCCCHHHHHHHHhCCCccccCC
Confidence 9999999999999876642 0124689999999999999999999877778889
Q ss_pred CCCceeeeEEEEEEEcCeEEEEEecCCC
Q 007334 355 EAGLTRDSVRVHFEYQGRTVYLVDTAGW 382 (607)
Q Consensus 355 ~~gtT~~~~~~~~~~~~~~~~liDTpG~ 382 (607)
.+|+|.+.... . .+..+.+|||||+
T Consensus 132 ~~~~t~~~~~~--~-~~~~~~~~DtpGi 156 (156)
T cd01859 132 SPGYTKGEQLV--K-ITSKIYLLDTPGV 156 (156)
T ss_pred CCCeeeeeEEE--E-cCCCEEEEECcCC
Confidence 99988764322 2 2447899999995
No 92
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.83 E-value=8.6e-20 Score=170.57 Aligned_cols=154 Identities=21% Similarity=0.214 Sum_probs=107.4
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC--CeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG--DLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
+|+++|.+|||||||++++++....... .+. ...+........+ ...+.+|||||++ ++......
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~ 68 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQQ-LST--YALTLYKHNAKFEGKTILVDFWDTAGQE----------RFQTMHAS 68 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCc-CCc--eeeEEEEEEEEECCEEEEEEEEeCCCch----------hhhhhhHH
Confidence 6999999999999999999987542111 111 1222222222333 4578899999987 55566678
Q ss_pred HhhccCEEEEEEecCCCCCHhHH-HHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGL 278 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~ 278 (607)
++..+|++++|+|++++.+..+. .+...+++..++.|+++|+||+|+.... ...........+. +++++||++|.
T Consensus 69 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~---~~~~~~~~~~~~~-~~~~~Sa~~~~ 144 (161)
T cd04124 69 YYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSV---TQKKFNFAEKHNL-PLYYVSAADGT 144 (161)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhH---HHHHHHHHHHcCC-eEEEEeCCCCC
Confidence 89999999999999987766552 3444454445578999999999985321 1122222333444 78999999999
Q ss_pred ChHHHHHHhccchH
Q 007334 279 GMTELYEALRPSVE 292 (607)
Q Consensus 279 gi~eL~~~i~~~l~ 292 (607)
|++++++.+.+.+.
T Consensus 145 gv~~l~~~l~~~~~ 158 (161)
T cd04124 145 NVVKLFQDAIKLAV 158 (161)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999886554
No 93
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.83 E-value=1.2e-19 Score=167.93 Aligned_cols=146 Identities=33% Similarity=0.527 Sum_probs=115.7
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHh
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLM 404 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~ 404 (607)
++|+++|++|+|||||+|++++.....+.+.+++|.+.....+.+++.++.+|||||+.+... ..+......+...+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~--~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETED--EIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcc--hHHHHHHHHHHHHHh
Confidence 589999999999999999999887677889999999988888888888999999999865521 122223345556778
Q ss_pred hccEEEEEeccchh--------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCC
Q 007334 405 RAHVVALVLDAEEV--------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALE 476 (607)
Q Consensus 405 ~ad~~llViD~~~~--------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~ 476 (607)
.+|++++|+|+++. .....++|+++|+||+|+.+.... .......+++++||++
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~vi~v~nK~D~~~~~~~------------------~~~~~~~~~~~~Sa~~ 141 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILELPADKPIIVVLNKSDLLPDSEL------------------LSLLAGKPIIAISAKT 141 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHhhcCCCEEEEEEchhcCCcccc------------------ccccCCCceEEEECCC
Confidence 99999999999964 111457999999999999865321 1123357899999999
Q ss_pred CCCHHHHHHHHHHH
Q 007334 477 GRGRIAVMHQVIDT 490 (607)
Q Consensus 477 g~gv~~l~~~i~~~ 490 (607)
+.|++++++.+...
T Consensus 142 ~~~v~~l~~~l~~~ 155 (157)
T cd04164 142 GEGLDELKEALLEL 155 (157)
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999988764
No 94
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=1e-20 Score=172.77 Aligned_cols=147 Identities=19% Similarity=0.219 Sum_probs=107.8
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.+||+++|..|||||||+-++.... +.....|.+........+..++ .++.||||||+.+.+ . .+..
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfvk~~-F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~------s----lapM 73 (200)
T KOG0092|consen 5 EFKVVLLGDSGVGKSSLVLRFVKDQ-FHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYH------S----LAPM 73 (200)
T ss_pred eEEEEEECCCCCCchhhhhhhhhCc-cccccccccccEEEEEEEEeCCcEEEEEEEEcCCccccc------c----cccc
Confidence 4799999999999999999999653 4333345555556666677766 577799999976652 1 1235
Q ss_pred HHhhccEEEEEeccchhh-----------HH---hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEVR-----------AV---EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~~-----------~~---~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
|+++|+++|+|||+++.. .. ..++-+.+|+||+||.+.+ .+..+..+.++...+.
T Consensus 74 YyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R-----------~V~~~ea~~yAe~~gl 142 (200)
T KOG0092|consen 74 YYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERR-----------EVEFEEAQAYAESQGL 142 (200)
T ss_pred eecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcc-----------cccHHHHHHHHHhcCC
Confidence 788999999999999861 11 1234466799999998742 2233334444555688
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
.++++|||+|.|++++|..|.+.+.
T Consensus 143 l~~ETSAKTg~Nv~~if~~Ia~~lp 167 (200)
T KOG0092|consen 143 LFFETSAKTGENVNEIFQAIAEKLP 167 (200)
T ss_pred EEEEEecccccCHHHHHHHHHHhcc
Confidence 9999999999999999999987543
No 95
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.83 E-value=1.6e-19 Score=167.09 Aligned_cols=154 Identities=33% Similarity=0.468 Sum_probs=118.7
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANV 200 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 200 (607)
.+|+++|.+|+|||||+|++++...+.+.+.++ +|.+.......+.+.++.+|||||+...... ........+...
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~--~~~~~~~~~~~~ 77 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAG--TTRDVIEESIDIGGIPVRLIDTAGIRETEDE--IEKIGIERAREA 77 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCC--CccceEEEEEEeCCEEEEEEECCCcCCCcch--HHHHHHHHHHHH
Confidence 379999999999999999999988776777777 8888887788888889999999998743321 111223445667
Q ss_pred hhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCCh
Q 007334 201 LAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGM 280 (607)
Q Consensus 201 ~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi 280 (607)
+..+|++++|+|++++.+..+...... ..+.|+++|+||+|+...... .......+++++||++|.|+
T Consensus 78 ~~~~~~~v~v~d~~~~~~~~~~~~~~~----~~~~~vi~v~nK~D~~~~~~~--------~~~~~~~~~~~~Sa~~~~~v 145 (157)
T cd04164 78 IEEADLVLFVIDASRGLDEEDLEILEL----PADKPIIVVLNKSDLLPDSEL--------LSLLAGKPIIAISAKTGEGL 145 (157)
T ss_pred HhhCCEEEEEEECCCCCCHHHHHHHHh----hcCCCEEEEEEchhcCCcccc--------ccccCCCceEEEECCCCCCH
Confidence 889999999999998877776554333 237899999999999865321 11222237899999999999
Q ss_pred HHHHHHhccc
Q 007334 281 TELYEALRPS 290 (607)
Q Consensus 281 ~eL~~~i~~~ 290 (607)
++++++|.+.
T Consensus 146 ~~l~~~l~~~ 155 (157)
T cd04164 146 DELKEALLEL 155 (157)
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 96
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.83 E-value=4.9e-20 Score=172.19 Aligned_cols=144 Identities=24% Similarity=0.274 Sum_probs=102.6
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||++++++.. .+..+++++.+.....+.+++. .+.+|||||+.+.. .....+
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~~~ 70 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSY--FVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFS----------AMREQY 70 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCC--CCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchh----------HHHHHH
Confidence 799999999999999999999763 3456666666655555666665 57789999964431 123356
Q ss_pred HhhccEEEEEeccchh-----------hHH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~-----------~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
++.+|++++|+|+++. ... ..+.|+++|+||+|+........ +.. ..+.+ ..++
T Consensus 71 ~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~--~~~-----~~~~~----~~~~ 139 (164)
T cd04145 71 MRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSR--EEG-----QELAR----KLKI 139 (164)
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecH--HHH-----HHHHH----HcCC
Confidence 7889999999999875 011 13689999999999975432111 111 11111 1256
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+++++||++|.|++++|+.+.+.+
T Consensus 140 ~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 140 PYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred cEEEeeCCCCCCHHHHHHHHHHhh
Confidence 899999999999999999987653
No 97
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.83 E-value=5.1e-20 Score=173.26 Aligned_cols=150 Identities=23% Similarity=0.300 Sum_probs=108.1
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe-EEEEEecCCCcccccccCcchhHHHHHHHHHh
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR-TVYLVDTAGWLQREKEKGPASLSVMQSRKNLM 404 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~-~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~ 404 (607)
.|+++|++|||||||+|+|.+.. ..++..+++|+++..+.+.+++. .+.+|||||+.+..... ..+ ...+.+.+.
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~-~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~--~~~-~~~~~~~~~ 77 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAK-PKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEG--KGL-GHRFLRHIE 77 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCC-ccccCCCccccCCcceEEEcCCCCeEEEEecCcccCccccc--CCc-hHHHHHHHH
Confidence 58999999999999999999764 46778889999888777777776 99999999986432111 111 123345566
Q ss_pred hccEEEEEeccchh-----------hHH------hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 405 RAHVVALVLDAEEV-----------RAV------EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 405 ~ad~~llViD~~~~-----------~~~------~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
.+|++++|+|+++. ... ..++|+++|+||+|+.+.....+... .........
T Consensus 78 ~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~-----------~~~~~~~~~ 146 (170)
T cd01898 78 RTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLK-----------ELLKELWGK 146 (170)
T ss_pred hCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHH-----------HHHhhCCCC
Confidence 79999999999754 011 13689999999999976532211111 111111356
Q ss_pred CEEEcccCCCCCHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
+++++||++|.|++++|+.+.+.
T Consensus 147 ~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 147 PVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred CEEEEecCCCCCHHHHHHHHHhh
Confidence 89999999999999999988753
No 98
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.83 E-value=1.4e-19 Score=168.91 Aligned_cols=155 Identities=21% Similarity=0.231 Sum_probs=111.9
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
+|+++|.+|||||||+++|++....... .+. .+.+.....+..++ ..+.+|||||+. .+......
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~l~l~D~~G~~----------~~~~~~~~ 68 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDS-QHT--IGVEFGSKIIRVGGKRVKLQIWDTAGQE----------RFRSVTRS 68 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCC-CCc--eeeeEEEEEEEECCEEEEEEEEECcchH----------HHHHhHHH
Confidence 7999999999999999999987643221 121 33333333333333 578999999987 45556677
Q ss_pred HhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETG 277 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g 277 (607)
++..+|++++|+|++++.+..+. .+...++.. .++.|+++|+||+|+..................+. +++++||++|
T Consensus 69 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 147 (161)
T cd04113 69 YYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGL-LFLETSALTG 147 (161)
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCC-EEEEEECCCC
Confidence 88999999999999987666552 222222222 35789999999999986554444555555666665 7899999999
Q ss_pred CChHHHHHHhccc
Q 007334 278 LGMTELYEALRPS 290 (607)
Q Consensus 278 ~gi~eL~~~i~~~ 290 (607)
.|++++++++...
T Consensus 148 ~~i~~~~~~~~~~ 160 (161)
T cd04113 148 ENVEEAFLKCARS 160 (161)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999998753
No 99
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.83 E-value=5.5e-20 Score=186.83 Aligned_cols=167 Identities=22% Similarity=0.289 Sum_probs=123.2
Q ss_pred HHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEE
Q 007334 192 RTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIA 271 (607)
Q Consensus 192 ~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (607)
+...+....++.||+|++|+|++.+.+..+..+.+.+. ++|+|+|+||+|+.+... .......+...+. +++.
T Consensus 10 k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l~----~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~~~-~vi~ 82 (276)
T TIGR03596 10 KARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRG----NKPRLIVLNKADLADPAV--TKQWLKYFEEKGI-KALA 82 (276)
T ss_pred HHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHHC----CCCEEEEEEccccCCHHH--HHHHHHHHHHcCC-eEEE
Confidence 56677888999999999999999988877766666552 679999999999864311 1111122223343 6799
Q ss_pred eecCCCCChHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhcCCcee
Q 007334 272 ISAETGLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVL 351 (607)
Q Consensus 272 iSA~~g~gi~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~~~~~~ 351 (607)
+||+++.|+++|.+.|.+.+++..... .........++++++|.||||||||+|+|++.....
T Consensus 83 iSa~~~~gi~~L~~~i~~~~~~~~~~~-----------------~~~~~~~~~~~~~~vG~~nvGKSslin~l~~~~~~~ 145 (276)
T TIGR03596 83 INAKKGKGVKKIIKAAKKLLKEKNEKL-----------------KAKGLKNRPIRAMIVGIPNVGKSTLINRLAGKKVAK 145 (276)
T ss_pred EECCCcccHHHHHHHHHHHHHHhhhhh-----------------hhccCCCCCeEEEEECCCCCCHHHHHHHHhCCCccc
Confidence 999999999999999887765421100 000011235789999999999999999999988788
Q ss_pred ecCCCCceeeeEEEEEEEcCeEEEEEecCCCccc
Q 007334 352 VGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQR 385 (607)
Q Consensus 352 ~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~ 385 (607)
+++.||+|+...... . +..+.|+||||+...
T Consensus 146 ~~~~~g~T~~~~~~~--~-~~~~~l~DtPG~~~~ 176 (276)
T TIGR03596 146 VGNRPGVTKGQQWIK--L-SDGLELLDTPGILWP 176 (276)
T ss_pred cCCCCCeecceEEEE--e-CCCEEEEECCCcccC
Confidence 999999999876433 3 346899999998655
No 100
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.83 E-value=7e-20 Score=170.07 Aligned_cols=154 Identities=25% Similarity=0.331 Sum_probs=110.6
Q ss_pred CEEEEEEecCCCCCHhHHHHH-HHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCChHHH
Q 007334 205 QFAIFMIDVRSGLHPLDLEVG-KWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTEL 283 (607)
Q Consensus 205 d~vl~VvD~s~~~~~~~~~~~-~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi~eL 283 (607)
|++++|+|++++.+..+..+. ..+... ++|+|+|+||+|+..... .......+.......++++||++|.|+++|
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~--~~p~IiVlNK~Dl~~~~~--~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L 76 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEK--GKKLILVLNKADLVPKEV--LRKWLAYLRHSYPTIPFKISATNGQGIEKK 76 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcC--CCCEEEEEechhcCCHHH--HHHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence 789999999998777765555 344433 789999999999975321 111122233333346799999999999999
Q ss_pred HHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeE
Q 007334 284 YEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSV 363 (607)
Q Consensus 284 ~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~ 363 (607)
.+.|.+.+.+........ .......+++++|.||||||||+|+|++.....+++.+|+|++..
T Consensus 77 ~~~i~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~ 139 (155)
T cd01849 77 ESAFTKQTNSNLKSYAKD-----------------GKLKKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQ 139 (155)
T ss_pred HHHHHHHhHHHHHHHHhc-----------------cccccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceE
Confidence 999876654321110000 001234789999999999999999999987778999999999987
Q ss_pred EEEEEEcCeEEEEEecCCC
Q 007334 364 RVHFEYQGRTVYLVDTAGW 382 (607)
Q Consensus 364 ~~~~~~~~~~~~liDTpG~ 382 (607)
...+ +..+.|+||||+
T Consensus 140 ~~~~---~~~~~liDtPG~ 155 (155)
T cd01849 140 EVKL---DNKIKLLDTPGI 155 (155)
T ss_pred EEEe---cCCEEEEECCCC
Confidence 6543 356899999995
No 101
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.83 E-value=7.4e-20 Score=170.78 Aligned_cols=147 Identities=20% Similarity=0.231 Sum_probs=101.4
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCc--eeecCCCCceeeeEEEEEEEc-CeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDR--VLVGPEAGLTRDSVRVHFEYQ-GRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~--~~~~~~~gtT~~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
.|+++|++|||||||+|+|++... ......+++|.+.....+.+. +..+.+|||||+.++ . ..+..+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~---------~-~~~~~~ 71 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKF---------I-KNMLAG 71 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHH---------H-HHHHhh
Confidence 589999999999999999997532 222335678888776667776 789999999996432 1 223456
Q ss_pred HhhccEEEEEeccchh------h----HHhcC-CcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEE
Q 007334 403 LMRAHVVALVLDAEEV------R----AVEEG-RGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVF 471 (607)
Q Consensus 403 i~~ad~~llViD~~~~------~----~~~~~-~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 471 (607)
+..||++++|+|+++. . ....+ +|+++|+||+|+.+.... ....+.+.+.+... ...+.++++
T Consensus 72 ~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~----~~~~~~~~~~~~~~--~~~~~~~~~ 145 (164)
T cd04171 72 AGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWL----ELVEEEIRELLAGT--FLADAPIFP 145 (164)
T ss_pred hhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHH----HHHHHHHHHHHHhc--CcCCCcEEE
Confidence 7789999999999862 1 11124 499999999999754211 11111121222111 013579999
Q ss_pred cccCCCCCHHHHHHHHH
Q 007334 472 TSALEGRGRIAVMHQVI 488 (607)
Q Consensus 472 iSA~~g~gv~~l~~~i~ 488 (607)
+||++|.|++++++.+.
T Consensus 146 ~Sa~~~~~v~~l~~~l~ 162 (164)
T cd04171 146 VSAVTGEGIEELKEYLD 162 (164)
T ss_pred EeCCCCcCHHHHHHHHh
Confidence 99999999999998765
No 102
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.83 E-value=5.4e-20 Score=170.70 Aligned_cols=145 Identities=29% Similarity=0.392 Sum_probs=107.7
Q ss_pred EEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH--hhc
Q 007334 329 IVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL--MRA 406 (607)
Q Consensus 329 ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i--~~a 406 (607)
++|.+|||||||+|++++.. ..+++++|+|++.....+.+++..+.+|||||+.+........ .....++ ..+
T Consensus 1 l~G~~~~GKssl~~~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~----~~~~~~~~~~~~ 75 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR-QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDE----KVARDFLLGEKP 75 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc-ccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhH----HHHHHHhcCCCC
Confidence 57999999999999999875 6778899999999888888989999999999986653111101 1122334 489
Q ss_pred cEEEEEeccchh--------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCC
Q 007334 407 HVVALVLDAEEV--------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGR 478 (607)
Q Consensus 407 d~~llViD~~~~--------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~ 478 (607)
|++++|+|+++. .....++|+++|+||+|+.+........+ .+.+ ..+.+++++||++|.
T Consensus 76 d~vi~v~d~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~--------~~~~----~~~~~~~~iSa~~~~ 143 (158)
T cd01879 76 DLIVNVVDATNLERNLYLTLQLLELGLPVVVALNMIDEAEKRGIKIDLD--------KLSE----LLGVPVVPTSARKGE 143 (158)
T ss_pred cEEEEEeeCCcchhHHHHHHHHHHcCCCEEEEEehhhhcccccchhhHH--------HHHH----hhCCCeEEEEccCCC
Confidence 999999999875 22346899999999999976532211111 1111 125689999999999
Q ss_pred CHHHHHHHHHHH
Q 007334 479 GRIAVMHQVIDT 490 (607)
Q Consensus 479 gv~~l~~~i~~~ 490 (607)
|++++++.+.+.
T Consensus 144 ~~~~l~~~l~~~ 155 (158)
T cd01879 144 GIDELKDAIAEL 155 (158)
T ss_pred CHHHHHHHHHHH
Confidence 999999888765
No 103
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.83 E-value=1.2e-19 Score=171.42 Aligned_cols=163 Identities=23% Similarity=0.279 Sum_probs=118.5
Q ss_pred HHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEE
Q 007334 192 RTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIA 271 (607)
Q Consensus 192 ~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (607)
+...++...+++||++++|+|++.+....+..+.+.+ .++|+++|+||+|+..... ..... ..+......++.
T Consensus 8 ~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~----~~k~~ilVlNK~Dl~~~~~--~~~~~-~~~~~~~~~vi~ 80 (171)
T cd01856 8 KALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL----GNKPRIIVLNKADLADPKK--TKKWL-KYFESKGEKVLF 80 (171)
T ss_pred HHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh----cCCCEEEEEehhhcCChHH--HHHHH-HHHHhcCCeEEE
Confidence 5677788999999999999999988776655544433 2579999999999964311 11111 222222336799
Q ss_pred eecCCCCChHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhcCCcee
Q 007334 272 ISAETGLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVL 351 (607)
Q Consensus 272 iSA~~g~gi~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~~~~~~ 351 (607)
+||+++.|+++|.+.+.+.++.. ... . ........++++++|.+|||||||+|+|++.....
T Consensus 81 iSa~~~~gi~~L~~~l~~~l~~~-----~~~------------~-~~~~~~~~~~~~~~G~~~vGKstlin~l~~~~~~~ 142 (171)
T cd01856 81 VNAKSGKGVKKLLKAAKKLLKDI-----EKL------------K-AKGLLPRGIRAMVVGIPNVGKSTLINRLRGKKVAK 142 (171)
T ss_pred EECCCcccHHHHHHHHHHHHHHH-----hhh------------h-hcccCCCCeEEEEECCCCCCHHHHHHHHhCCCcee
Confidence 99999999999999998766431 000 0 00111234789999999999999999999887778
Q ss_pred ecCCCCceeeeEEEEEEEcCeEEEEEecCCC
Q 007334 352 VGPEAGLTRDSVRVHFEYQGRTVYLVDTAGW 382 (607)
Q Consensus 352 ~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~ 382 (607)
+++.+|+|++.....+. ..+.+|||||+
T Consensus 143 ~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 143 VGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred ecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 89999999887654442 56899999996
No 104
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.83 E-value=1.1e-19 Score=169.62 Aligned_cols=157 Identities=22% Similarity=0.236 Sum_probs=110.1
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee--CCeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL--GDLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|++|||||||+|+|++.+.... ..+. ...+.....+.+ .+..+.+|||||.. ++.....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~t--~~~~~~~~~v~~~~~~~~~~i~D~~G~~----------~~~~~~~ 68 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSEN-QEST--IGAAFLTQTVNLDDTTVKFEIWDTAGQE----------RYRSLAP 68 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC-CCCc--cceeEEEEEEEECCEEEEEEEEeCCchH----------HHHHHHH
Confidence 4799999999999999999998875321 1221 121222223333 34678999999986 4445556
Q ss_pred HHhhccCEEEEEEecCCCCCHhH-HHHHHHHHhhC-CCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLD-LEVGKWLRKHA-PQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAET 276 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~-~~~~~~l~~~~-~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~ 276 (607)
.+++.+|++++|+|++++.+... ..+...+.... ++.|+++|+||+|+..................+. .++++||++
T Consensus 69 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 147 (163)
T cd01860 69 MYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGL-LFFETSAKT 147 (163)
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCC-EEEEEECCC
Confidence 67889999999999997655444 22334444432 5689999999999885444334444444555565 789999999
Q ss_pred CCChHHHHHHhccch
Q 007334 277 GLGMTELYEALRPSV 291 (607)
Q Consensus 277 g~gi~eL~~~i~~~l 291 (607)
|.|+++++++|.+.+
T Consensus 148 ~~~v~~l~~~l~~~l 162 (163)
T cd01860 148 GENVNELFTEIAKKL 162 (163)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999988654
No 105
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.83 E-value=8.1e-20 Score=173.01 Aligned_cols=157 Identities=14% Similarity=0.118 Sum_probs=114.6
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.++||||||+.+++...+. ..... |..+.....+..++ .++.+|||+|++ ++.....
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~--~~~~~--Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~----------~~~~~~~ 67 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFP--TDYIP--TVFDNFSANVSVDGNTVNLGLWDTAGQE----------DYNRLRP 67 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCC--CCCCC--cceeeeEEEEEECCEEEEEEEEECCCCc----------cccccch
Confidence 47999999999999999999987652 22211 22232223333333 678999999998 4555566
Q ss_pred HHhhccCEEEEEEecCCCCCHhHH--HHHHHHHhhCCCCcEEEEecCCCcccCC----------cCcHHHHHHHHHhcCC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHNG----------TGSLAGAAAESLMLGF 266 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~D~~~~~----------~~~~~~~~~~~~~~~~ 266 (607)
.+++.||++|+|+|+++..+.++. .+...+++..++.|+++|+||+|+.+.. .+..++....+...+.
T Consensus 68 ~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~ 147 (176)
T cd04133 68 LSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGA 147 (176)
T ss_pred hhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCC
Confidence 789999999999999998888763 2444444445679999999999996542 2344555555666665
Q ss_pred CCcEEeecCCCCChHHHHHHhccch
Q 007334 267 GDPIAISAETGLGMTELYEALRPSV 291 (607)
Q Consensus 267 ~~~i~iSA~~g~gi~eL~~~i~~~l 291 (607)
..++++||++|.|++++|+.+.+.+
T Consensus 148 ~~~~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 148 AAYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred CEEEECCCCcccCHHHHHHHHHHHH
Confidence 4579999999999999999988644
No 106
>PTZ00369 Ras-like protein; Provisional
Probab=99.83 E-value=9.2e-20 Score=175.13 Aligned_cols=160 Identities=18% Similarity=0.198 Sum_probs=112.2
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC--CeeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG--DLRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
.++|+++|.+|||||||++++.+..+.. .... ++.+.....+..+ ...+.+|||||+. ++....
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~l~ 70 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFID--EYDP--TIEDSYRKQCVIDEETCLLDILDTAGQE----------EYSAMR 70 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCc--CcCC--chhhEEEEEEEECCEEEEEEEEeCCCCc----------cchhhH
Confidence 4689999999999999999999876421 1111 2222222333333 3568899999998 444556
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeec
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISA 274 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA 274 (607)
..++..+|++++|+|++++.+..+. .+...+... ..+.|+++|+||+|+..................+. +++++||
T Consensus 71 ~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~-~~~e~Sa 149 (189)
T PTZ00369 71 DQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGI-PFLETSA 149 (189)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCC-EEEEeeC
Confidence 6788999999999999987765552 233333332 23789999999999876544443333444445555 6899999
Q ss_pred CCCCChHHHHHHhccchHHH
Q 007334 275 ETGLGMTELYEALRPSVEDY 294 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~~l~~~ 294 (607)
++|.|+++++++|.+.+.+.
T Consensus 150 k~~~gi~~~~~~l~~~l~~~ 169 (189)
T PTZ00369 150 KQRVNVDEAFYELVREIRKY 169 (189)
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 99999999999998777553
No 107
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.83 E-value=1.4e-19 Score=177.15 Aligned_cols=158 Identities=24% Similarity=0.219 Sum_probs=111.9
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHh
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVL 201 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 201 (607)
+|+++|.+|||||||++++++..+.. ..+. +..+. ....+....+.+|||||+. .+......++
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f~~--~~~T--ig~~~--~~~~~~~~~l~iwDt~G~e----------~~~~l~~~~~ 65 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFKD--TVST--VGGAF--YLKQWGPYNISIWDTAGRE----------QFHGLGSMYC 65 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC--CCCc--cceEE--EEEEeeEEEEEEEeCCCcc----------cchhhHHHHh
Confidence 69999999999999999999877531 1221 22222 2223456789999999997 3444556678
Q ss_pred hccCEEEEEEecCCCCCHhHHH--HHHHHHhhCCCCcEEEEecCCCccc-------------------CCcCcHHHHHHH
Q 007334 202 AKTQFAIFMIDVRSGLHPLDLE--VGKWLRKHAPQIKPIVAMNKCESLH-------------------NGTGSLAGAAAE 260 (607)
Q Consensus 202 ~~ad~vl~VvD~s~~~~~~~~~--~~~~l~~~~~~~p~ilV~NK~D~~~-------------------~~~~~~~~~~~~ 260 (607)
..+|++|+|+|+++..+..+.. +..+.+....+.|+|+|+||+|+.. .+.+..++....
T Consensus 66 ~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~ 145 (220)
T cd04126 66 RGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAF 145 (220)
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHH
Confidence 9999999999999987776632 2222222234689999999999975 233444455555
Q ss_pred HHhcCC-------------CCcEEeecCCCCChHHHHHHhccchHHHH
Q 007334 261 SLMLGF-------------GDPIAISAETGLGMTELYEALRPSVEDYM 295 (607)
Q Consensus 261 ~~~~~~-------------~~~i~iSA~~g~gi~eL~~~i~~~l~~~~ 295 (607)
+...+. -+++++||++|.||+++|+.+.+.+...+
T Consensus 146 a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~ 193 (220)
T cd04126 146 YKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLI 193 (220)
T ss_pred HHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHH
Confidence 555441 25799999999999999999987765543
No 108
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.83 E-value=1.2e-19 Score=170.37 Aligned_cols=149 Identities=29% Similarity=0.391 Sum_probs=104.1
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH-h
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL-M 404 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i-~ 404 (607)
+|+++|++|||||||+|+|++.. ..+++++++|.+.....+.+++.++.||||||+.+... +....+. ..+..++ .
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~-~~~~~~~~~ 78 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAK-PEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPL-EERNTIE-MQAITALAH 78 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCC-CccCCCCCcccceeEEEEccCceEEEEEECCCcCCccc-cCCchHH-HHHHHHHHh
Confidence 68999999999999999999875 44667788888887777777888999999999854311 1111110 1111222 2
Q ss_pred hccEEEEEeccchh-------------hHHh--cCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCE
Q 007334 405 RAHVVALVLDAEEV-------------RAVE--EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPV 469 (607)
Q Consensus 405 ~ad~~llViD~~~~-------------~~~~--~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (607)
.+|++|+|+|+++. .... .++|+|+|+||+|+.+.....+ . .+ +......++
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~----~-----~~----~~~~~~~~~ 145 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSE----I-----EE----EEELEGEEV 145 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHH----H-----HH----hhhhccCce
Confidence 36899999999753 0111 2789999999999976422111 0 11 112235689
Q ss_pred EEcccCCCCCHHHHHHHHHHH
Q 007334 470 VFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 470 v~iSA~~g~gv~~l~~~i~~~ 490 (607)
+++||++|.|++++++++.+.
T Consensus 146 ~~~Sa~~~~gi~~l~~~l~~~ 166 (168)
T cd01897 146 LKISTLTEEGVDEVKNKACEL 166 (168)
T ss_pred EEEEecccCCHHHHHHHHHHH
Confidence 999999999999999988764
No 109
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.83 E-value=1.1e-19 Score=173.98 Aligned_cols=148 Identities=20% Similarity=0.186 Sum_probs=103.9
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.+||+++|.++||||||+.++.+.. ......+..+.+.....+..++. .+.||||||..+. ..+ ...
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~~~-~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~---------~~l-~~~ 74 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDGS-TESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRF---------CTI-FRS 74 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC-CCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHH---------HHH-HHH
Confidence 4899999999999999999999653 22222234455655555666664 6679999996432 212 235
Q ss_pred HHhhccEEEEEeccchh-------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEV-------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~-------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
+++.||++|+|+|+++. .....+.|+|||+||+||.+..... .+..+.+++..+.+
T Consensus 75 ~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~-----------~~~~~~~a~~~~~~ 143 (189)
T cd04121 75 YSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVA-----------TEQAQAYAERNGMT 143 (189)
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCC-----------HHHHHHHHHHcCCE
Confidence 67899999999999986 1122578999999999996542211 11111222234678
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
++++||++|.||+++|+++.+.+..
T Consensus 144 ~~e~SAk~g~~V~~~F~~l~~~i~~ 168 (189)
T cd04121 144 FFEVSPLCNFNITESFTELARIVLM 168 (189)
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999876543
No 110
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.83 E-value=1.8e-19 Score=171.73 Aligned_cols=156 Identities=12% Similarity=0.125 Sum_probs=114.9
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+++|.+|||||||+++++...+. ..... +..+.....+..++ ..+.+|||+|++ ++....
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~~~f~--~~~~p--T~~~~~~~~~~~~~~~~~l~iwDtaG~e----------~~~~~~ 70 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVP--TVFENYTASFEIDTQRIELSLWDTSGSP----------YYDNVR 70 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCCC--CccCC--ceeeeeEEEEEECCEEEEEEEEECCCch----------hhHhhh
Confidence 468999999999999999999987642 22221 22222222333333 579999999997 555566
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH--HHHHHHHhhCCCCcEEEEecCCCcccC------------CcCcHHHHHHHHHh
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHN------------GTGSLAGAAAESLM 263 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~D~~~~------------~~~~~~~~~~~~~~ 263 (607)
..++..+|++++|+|++++.+.... .+...+++..++.|+++|+||+|+... +.+..++....+..
T Consensus 71 ~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~ 150 (182)
T cd04172 71 PLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQ 150 (182)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHH
Confidence 6789999999999999998777763 345555555668899999999998641 23455566666667
Q ss_pred cCCCCcEEeecCCCCC-hHHHHHHhcc
Q 007334 264 LGFGDPIAISAETGLG-MTELYEALRP 289 (607)
Q Consensus 264 ~~~~~~i~iSA~~g~g-i~eL~~~i~~ 289 (607)
.+...++++||++|.| ++++|+.+..
T Consensus 151 ~~~~~~~E~SAk~~~n~v~~~F~~~~~ 177 (182)
T cd04172 151 IGAATYIECSALQSENSVRDIFHVATL 177 (182)
T ss_pred cCCCEEEECCcCCCCCCHHHHHHHHHH
Confidence 7754789999999998 9999998765
No 111
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.83 E-value=3.6e-19 Score=165.87 Aligned_cols=164 Identities=24% Similarity=0.351 Sum_probs=119.4
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
..+|+++|.+|+|||||+|+|++.+.+.....+. +++..........+..+.+|||||+...... ...........
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~--~~~~~~~~~~~ 78 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQ--TTRNRIRGIYTDDDAQIIFVDTPGIHKPKKK--LGERMVKAAWS 78 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCC--ceeceEEEEEEcCCeEEEEEECCCCCcchHH--HHHHHHHHHHH
Confidence 3579999999999999999999988766665555 6666666666666788999999998743221 11123334456
Q ss_pred HhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHH-hcCCCCcEEeecCCCC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESL-MLGFGDPIAISAETGL 278 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~-~~~~~~~i~iSA~~g~ 278 (607)
.+..+|++++|+|++++.+..+..+.+.+... +.|+++|+||+|+...... ......... ..+..+++++|++++.
T Consensus 79 ~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~--~~~~iiv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~ 155 (168)
T cd04163 79 ALKDVDLVLFVVDASEPIGEGDEFILELLKKS--KTPVILVLNKIDLVKDKED-LLPLLEKLKELGPFAEIFPISALKGE 155 (168)
T ss_pred HHHhCCEEEEEEECCCccCchHHHHHHHHHHh--CCCEEEEEEchhccccHHH-HHHHHHHHHhccCCCceEEEEeccCC
Confidence 78899999999999988666666666777654 6899999999999843221 122222222 2334578999999999
Q ss_pred ChHHHHHHhccc
Q 007334 279 GMTELYEALRPS 290 (607)
Q Consensus 279 gi~eL~~~i~~~ 290 (607)
|++++++.|.+.
T Consensus 156 ~~~~l~~~l~~~ 167 (168)
T cd04163 156 NVDELLEEIVKY 167 (168)
T ss_pred ChHHHHHHHHhh
Confidence 999999998754
No 112
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.83 E-value=1.8e-19 Score=171.30 Aligned_cols=155 Identities=12% Similarity=0.121 Sum_probs=113.2
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.+|||||||++++.+..+. .+... +..+.....+.+++ ..+.+|||+|++ ++.....
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~--~~~~~--t~~~~~~~~~~~~~~~~~l~iwDt~G~~----------~~~~~~~ 67 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYP--ETYVP--TVFENYTASFEIDEQRIELSLWDTSGSP----------YYDNVRP 67 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCC--CCcCC--ceEEEEEEEEEECCEEEEEEEEECCCch----------hhhhcch
Confidence 47999999999999999999987642 22221 22222223334443 568999999987 4444556
Q ss_pred HHhhccCEEEEEEecCCCCCHhHH--HHHHHHHhhCCCCcEEEEecCCCcccC------------CcCcHHHHHHHHHhc
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHN------------GTGSLAGAAAESLML 264 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~D~~~~------------~~~~~~~~~~~~~~~ 264 (607)
.++..||++|+|+|++++.+..+. .+...+++..++.|+++|+||+|+... ..+..++....+...
T Consensus 68 ~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~ 147 (178)
T cd04131 68 LCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQL 147 (178)
T ss_pred hhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHh
Confidence 688999999999999998887762 355555555668999999999998641 234455556666667
Q ss_pred CCCCcEEeecCCCCC-hHHHHHHhcc
Q 007334 265 GFGDPIAISAETGLG-MTELYEALRP 289 (607)
Q Consensus 265 ~~~~~i~iSA~~g~g-i~eL~~~i~~ 289 (607)
+...++++||++|+| ++++|+.+..
T Consensus 148 ~~~~~~E~SA~~~~~~v~~~F~~~~~ 173 (178)
T cd04131 148 GAEIYLECSAFTSEKSVRDIFHVATM 173 (178)
T ss_pred CCCEEEECccCcCCcCHHHHHHHHHH
Confidence 754689999999995 9999998875
No 113
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.83 E-value=2.4e-19 Score=176.51 Aligned_cols=159 Identities=11% Similarity=0.063 Sum_probs=116.9
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC--CeeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG--DLRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|++||.+|||||||++++++..+. ..... +..+.....+..+ ...+.||||+|++ ++....
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~F~--~~y~p--Ti~~~~~~~i~~~~~~v~l~iwDTaG~e----------~~~~~~ 78 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCYP--ETYVP--TVFENYTAGLETEEQRVELSLWDTSGSP----------YYDNVR 78 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCCCC--CCcCC--ceeeeeEEEEEECCEEEEEEEEeCCCch----------hhHHHH
Confidence 368999999999999999999987542 22211 2112222223333 3579999999987 555666
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH--HHHHHHHhhCCCCcEEEEecCCCcccC------------CcCcHHHHHHHHHh
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHN------------GTGSLAGAAAESLM 263 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~D~~~~------------~~~~~~~~~~~~~~ 263 (607)
..++..||++++|+|++++.+.... .+...+.+..++.|+|+|+||+|+... +.+..++....+..
T Consensus 79 ~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~ 158 (232)
T cd04174 79 PLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQ 158 (232)
T ss_pred HHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHH
Confidence 7789999999999999998877652 344555554567899999999998642 33555666667777
Q ss_pred cCCCCcEEeecCCCC-ChHHHHHHhccchH
Q 007334 264 LGFGDPIAISAETGL-GMTELYEALRPSVE 292 (607)
Q Consensus 264 ~~~~~~i~iSA~~g~-gi~eL~~~i~~~l~ 292 (607)
.+...++++||++|+ |++++|+.+...+.
T Consensus 159 ~~~~~~~EtSAktg~~~V~e~F~~~~~~~~ 188 (232)
T cd04174 159 LGAEVYLECSAFTSEKSIHSIFRSASLLCL 188 (232)
T ss_pred cCCCEEEEccCCcCCcCHHHHHHHHHHHHH
Confidence 776557999999998 89999999887654
No 114
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.83 E-value=2.8e-19 Score=167.29 Aligned_cols=157 Identities=20% Similarity=0.192 Sum_probs=106.7
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee---CCeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL---GDLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
+|+++|.+|||||||+++|.........+... ++..+.....+.. ....+.+|||||+. .+.....
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~ 70 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLM-TTGCDFVVKEVPVDTDNTVELFIFDSAGQE----------LYSDMVS 70 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCccCCC-ceEEEEEEEEEEeCCCCEEEEEEEECCCHH----------HHHHHHH
Confidence 79999999999999999998642211222221 0223333233322 34689999999986 4445566
Q ss_pred HHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETG 277 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g 277 (607)
.++..+|++++|+|++++.+..+. .+.+.+.....+.|+++|+||+|+.+................+. +++++||++|
T Consensus 71 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 149 (164)
T cd04101 71 NYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQL-KFFKTSALRG 149 (164)
T ss_pred HHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCC-eEEEEeCCCC
Confidence 788999999999999986655432 23333333334689999999999976544333332333344454 6799999999
Q ss_pred CChHHHHHHhccc
Q 007334 278 LGMTELYEALRPS 290 (607)
Q Consensus 278 ~gi~eL~~~i~~~ 290 (607)
.|++++++.|.+.
T Consensus 150 ~gi~~l~~~l~~~ 162 (164)
T cd04101 150 VGYEEPFESLARA 162 (164)
T ss_pred CChHHHHHHHHHH
Confidence 9999999988764
No 115
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.83 E-value=1.9e-19 Score=193.41 Aligned_cols=160 Identities=26% Similarity=0.333 Sum_probs=122.3
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
...+|+|+|.||||||||+|+|++...+++++.++ +|+|.....+.+++..+.+|||||+.... +.........+.
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pg--tTrd~~~~~i~~~g~~v~l~DTaG~~~~~--~~ie~~gi~~~~ 277 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKG--TTRDVVEGDFELNGILIKLLDTAGIREHA--DFVERLGIEKSF 277 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCC--cEEEEEEEEEEECCEEEEEeeCCCcccch--hHHHHHHHHHHH
Confidence 45799999999999999999999988888888888 99999999999999999999999997322 111112234566
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGL 278 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~ 278 (607)
.++..+|++++|+|++++.+..+. +...+.. .++|+++|+||+|+... . .. .....++. +++.+||++ .
T Consensus 278 ~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~--~~~piIlV~NK~Dl~~~-~--~~---~~~~~~~~-~~~~vSak~-~ 346 (442)
T TIGR00450 278 KAIKQADLVIYVLDASQPLTKDDF-LIIDLNK--SKKPFILVLNKIDLKIN-S--LE---FFVSSKVL-NSSNLSAKQ-L 346 (442)
T ss_pred HHHhhCCEEEEEEECCCCCChhHH-HHHHHhh--CCCCEEEEEECccCCCc-c--hh---hhhhhcCC-ceEEEEEec-C
Confidence 788999999999999998876654 3333332 37899999999998653 1 11 11223344 578999998 6
Q ss_pred ChHHHHHHhccchHH
Q 007334 279 GMTELYEALRPSVED 293 (607)
Q Consensus 279 gi~eL~~~i~~~l~~ 293 (607)
|++++++.+.+.+.+
T Consensus 347 gI~~~~~~L~~~i~~ 361 (442)
T TIGR00450 347 KIKALVDLLTQKINA 361 (442)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999998876654
No 116
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.83 E-value=8.1e-20 Score=186.56 Aligned_cols=167 Identities=22% Similarity=0.285 Sum_probs=123.0
Q ss_pred HHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEE
Q 007334 192 RTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIA 271 (607)
Q Consensus 192 ~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (607)
+...+....+..||+||+|+|++.+.+..+..+.+.+. ++|+++|+||+|+.+... .......+...+. +++.
T Consensus 13 k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~----~kp~iiVlNK~DL~~~~~--~~~~~~~~~~~~~-~vi~ 85 (287)
T PRK09563 13 KARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG----NKPRLLILNKSDLADPEV--TKKWIEYFEEQGI-KALA 85 (287)
T ss_pred HHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC----CCCEEEEEEchhcCCHHH--HHHHHHHHHHcCC-eEEE
Confidence 45677788999999999999999988877755555442 689999999999864311 1111222223343 6799
Q ss_pred eecCCCCChHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhcCCcee
Q 007334 272 ISAETGLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVL 351 (607)
Q Consensus 272 iSA~~g~gi~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~~~~~~ 351 (607)
+||+++.|+++|.+.|.+.+++...... ........++++++|.||||||||+|+|++...+.
T Consensus 86 vSa~~~~gi~~L~~~l~~~l~~~~~~~~-----------------~~~~~~~~~~~~~~G~pnvGKSsliN~l~~~~~~~ 148 (287)
T PRK09563 86 INAKKGQGVKKILKAAKKLLKEKNERRK-----------------AKGMRPRAIRAMIIGIPNVGKSTLINRLAGKKIAK 148 (287)
T ss_pred EECCCcccHHHHHHHHHHHHHHHHhhhh-----------------hcccCcCceEEEEECCCCCCHHHHHHHHhcCCccc
Confidence 9999999999999998877754311100 00011235799999999999999999999988889
Q ss_pred ecCCCCceeeeEEEEEEEcCeEEEEEecCCCccc
Q 007334 352 VGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQR 385 (607)
Q Consensus 352 ~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~ 385 (607)
+++.||+|++.... .. +..+.|+||||+...
T Consensus 149 ~~~~~g~T~~~~~~--~~-~~~~~l~DtPGi~~~ 179 (287)
T PRK09563 149 TGNRPGVTKAQQWI--KL-GKGLELLDTPGILWP 179 (287)
T ss_pred cCCCCCeEEEEEEE--Ee-CCcEEEEECCCcCCC
Confidence 99999999997533 22 456899999999655
No 117
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.83 E-value=1.1e-19 Score=168.14 Aligned_cols=146 Identities=30% Similarity=0.413 Sum_probs=109.3
Q ss_pred EEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhhcc
Q 007334 328 AIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAH 407 (607)
Q Consensus 328 ~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad 407 (607)
+++|.+|||||||+|+|++.....+++.+++|++.......+++..+.+|||||+.+... .........+...++.+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~--~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDE--GISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchh--HHHHHHHHHHHHHHHhCC
Confidence 578999999999999999887667888999999988888888899999999999865421 001111123445678899
Q ss_pred EEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCC
Q 007334 408 VVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEG 477 (607)
Q Consensus 408 ~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g 477 (607)
++++|+|+.+. .....++|+++|+||+|+.+.... ..... .....+++++||++|
T Consensus 79 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~-----------~~~~~----~~~~~~~~~~Sa~~~ 143 (157)
T cd01894 79 VILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDE-----------AAEFY----SLGFGEPIPISAEHG 143 (157)
T ss_pred EEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHHH-----------HHHHH----hcCCCCeEEEecccC
Confidence 99999999764 122347999999999999764211 01111 111237899999999
Q ss_pred CCHHHHHHHHHHH
Q 007334 478 RGRIAVMHQVIDT 490 (607)
Q Consensus 478 ~gv~~l~~~i~~~ 490 (607)
.|++++++.+.+.
T Consensus 144 ~gv~~l~~~l~~~ 156 (157)
T cd01894 144 RGIGDLLDAILEL 156 (157)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999998764
No 118
>PLN03118 Rab family protein; Provisional
Probab=99.82 E-value=1.9e-19 Score=176.12 Aligned_cols=159 Identities=22% Similarity=0.235 Sum_probs=114.5
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+|+|.+|||||||+++|++....... +. ++.+.....+.+++ ..+.||||||+. ++...+
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~~~~~~--~t--~~~~~~~~~~~~~~~~~~l~l~Dt~G~~----------~~~~~~ 79 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSSVEDLA--PT--IGVDFKIKQLTVGGKRLKLTIWDTAGQE----------RFRTLT 79 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCcC--CC--ceeEEEEEEEEECCEEEEEEEEECCCch----------hhHHHH
Confidence 468999999999999999999987653222 21 33333333344443 578999999987 455566
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHHH--HHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEee
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDLE--VGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAIS 273 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~~--~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iS 273 (607)
..+++.+|++|+|+|+++..+..+.. +...+... ..+.|+++|+||+|+..................+. .++++|
T Consensus 80 ~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~-~~~e~S 158 (211)
T PLN03118 80 SSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGC-LFLECS 158 (211)
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCC-EEEEEe
Confidence 77889999999999999876666532 22333322 23579999999999976554444444444455555 679999
Q ss_pred cCCCCChHHHHHHhccchHH
Q 007334 274 AETGLGMTELYEALRPSVED 293 (607)
Q Consensus 274 A~~g~gi~eL~~~i~~~l~~ 293 (607)
|++|.|++++++.|...+.+
T Consensus 159 Ak~~~~v~~l~~~l~~~~~~ 178 (211)
T PLN03118 159 AKTRENVEQCFEELALKIME 178 (211)
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999977654
No 119
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.82 E-value=3.4e-19 Score=166.57 Aligned_cols=153 Identities=20% Similarity=0.266 Sum_probs=111.7
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
+|+++|.+|||||||++++++..+. . ....+...+.....+...+ ..+.+|||+|.. ++......
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~--~-~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~----------~~~~~~~~ 68 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFH--S-SHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE----------RYQTITKQ 68 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCC--C-CCCCceeeEEEEEEEEECCEEEEEEEEeCCCcH----------hHHhhHHH
Confidence 6999999999999999999987652 1 1121244444444455555 568899999987 45556667
Q ss_pred HhhccCEEEEEEecCCCCCHhHHHHHHHHH---hhC-CCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDLEVGKWLR---KHA-PQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~---~~~-~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
++..+|++++|+|+++..+.++ +.+|+. ... .+.|+++|+||+|+...+....++....+...+. +++++||+
T Consensus 69 ~~~~~~~~i~v~d~~~~~sf~~--~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sa~ 145 (161)
T cd04117 69 YYRRAQGIFLVYDISSERSYQH--IMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGM-DFFETSAC 145 (161)
T ss_pred HhcCCcEEEEEEECCCHHHHHH--HHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCC-EEEEEeCC
Confidence 8899999999999998766655 334443 332 3689999999999976655444444444555565 68999999
Q ss_pred CCCChHHHHHHhccc
Q 007334 276 TGLGMTELYEALRPS 290 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~ 290 (607)
+|.|++++|++|.+.
T Consensus 146 ~~~~v~~~f~~l~~~ 160 (161)
T cd04117 146 TNSNIKESFTRLTEL 160 (161)
T ss_pred CCCCHHHHHHHHHhh
Confidence 999999999998753
No 120
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.82 E-value=1.9e-19 Score=170.47 Aligned_cols=155 Identities=15% Similarity=0.120 Sum_probs=108.8
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.+|||||||+.++++..+. ..... +..+.....+..++ ..+.+|||||+. ++.....
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~--~~~~~--t~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~ 67 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFP--GEYIP--TVFDNYSANVMVDGKPVNLGLWDTAGQE----------DYDRLRP 67 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC--CcCCC--cceeeeEEEEEECCEEEEEEEEECCCch----------hhhhhhh
Confidence 37999999999999999999976542 22211 22232222333444 578899999987 4445556
Q ss_pred HHhhccCEEEEEEecCCCCCHhHH--HHHHHHHhhCCCCcEEEEecCCCcccCC------------cCcHHHHHHHHHhc
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHNG------------TGSLAGAAAESLML 264 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~D~~~~~------------~~~~~~~~~~~~~~ 264 (607)
.++..+|++|+|+|++++.+..+. .+...+....++.|+++|+||+|+.... .....+....+..+
T Consensus 68 ~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 147 (174)
T cd01871 68 LSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI 147 (174)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHc
Confidence 688999999999999987776663 2444444445578999999999986432 12233333444455
Q ss_pred CCCCcEEeecCCCCChHHHHHHhcc
Q 007334 265 GFGDPIAISAETGLGMTELYEALRP 289 (607)
Q Consensus 265 ~~~~~i~iSA~~g~gi~eL~~~i~~ 289 (607)
+...++++||++|+|++++++.+..
T Consensus 148 ~~~~~~e~Sa~~~~~i~~~f~~l~~ 172 (174)
T cd01871 148 GAVKYLECSALTQKGLKTVFDEAIR 172 (174)
T ss_pred CCcEEEEecccccCCHHHHHHHHHH
Confidence 5336799999999999999998864
No 121
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.82 E-value=1.7e-19 Score=164.65 Aligned_cols=137 Identities=25% Similarity=0.344 Sum_probs=107.6
Q ss_pred HHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeec
Q 007334 195 GMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISA 274 (607)
Q Consensus 195 ~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA 274 (607)
......+..+|++++|+|++++.+..+..+.+++.....++|+++|+||+|+..... .......+...+. .++++||
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~-~ii~iSa 79 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGI-VVVFFSA 79 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHH--HHHHHHHHHhcCC-eEEEEEe
Confidence 456778999999999999999988887788888876545789999999999965321 1222333444554 7899999
Q ss_pred CCCCChHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhcCCceeecC
Q 007334 275 ETGLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGP 354 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~ 354 (607)
++|.+ +++++|.+|||||||+|+|++.....++.
T Consensus 80 ~~~~~----------------------------------------------~~~~~G~~~vGKstlin~l~~~~~~~~~~ 113 (141)
T cd01857 80 LKENA----------------------------------------------TIGLVGYPNVGKSSLINALVGKKKVSVSA 113 (141)
T ss_pred cCCCc----------------------------------------------EEEEECCCCCCHHHHHHHHhCCCceeeCC
Confidence 86643 48999999999999999999988778999
Q ss_pred CCCceeeeEEEEEEEcCeEEEEEecCCCc
Q 007334 355 EAGLTRDSVRVHFEYQGRTVYLVDTAGWL 383 (607)
Q Consensus 355 ~~gtT~~~~~~~~~~~~~~~~liDTpG~~ 383 (607)
.+|+|++..... .++ .+.||||||+.
T Consensus 114 ~~~~~~~~~~~~--~~~-~~~i~DtpG~~ 139 (141)
T cd01857 114 TPGKTKHFQTIF--LTP-TITLCDCPGLV 139 (141)
T ss_pred CCCcccceEEEE--eCC-CEEEEECCCcC
Confidence 999998865433 333 68999999974
No 122
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.82 E-value=8.7e-20 Score=170.34 Aligned_cols=143 Identities=25% Similarity=0.254 Sum_probs=100.4
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||++++++.. .+..+++|+.+.....+..++. .+.||||||..+.. .. ...+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------~~-~~~~ 69 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGI--FVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFT---------AM-RDLY 69 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccc---------hH-HHHH
Confidence 689999999999999999999664 2344555665666566666665 45689999964432 11 2346
Q ss_pred HhhccEEEEEeccchh-----------hHH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~-----------~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
++.+|++++|+|+++. ... ..++|+++|+||+|+.+...... +.. ..+.+. .+.
T Consensus 70 ~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~-----~~~~~~----~~~ 138 (163)
T cd04136 70 IKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSR--EEG-----QALARQ----WGC 138 (163)
T ss_pred hhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecH--HHH-----HHHHHH----cCC
Confidence 7789999999999875 011 13689999999999975422111 000 111111 246
Q ss_pred CEEEcccCCCCCHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
+++++||++|.|+.++|+.+.+.
T Consensus 139 ~~~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04136 139 PFYETSAKSKINVDEVFADLVRQ 161 (163)
T ss_pred eEEEecCCCCCCHHHHHHHHHHh
Confidence 89999999999999999988764
No 123
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.82 E-value=2.6e-19 Score=170.47 Aligned_cols=160 Identities=24% Similarity=0.289 Sum_probs=111.1
Q ss_pred ccccCCCEEEEecCCCCchhHHHHHhhccc-eeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHH
Q 007334 115 IDINLLPTVMIIGRPNVGKSALFNRLIRRR-EALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRT 193 (607)
Q Consensus 115 ~~~~~~~~V~ivG~~nvGKSSL~n~L~~~~-~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~ 193 (607)
.+....++|+|+|.+|||||||+|+|++.. ...++..++ +|.+..+... + ..+.+|||||+............+
T Consensus 13 ~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~--~t~~~~~~~~--~-~~~~liDtpG~~~~~~~~~~~~~~ 87 (179)
T TIGR03598 13 LPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPG--RTQLINFFEV--N-DGFRLVDLPGYGYAKVSKEEKEKW 87 (179)
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCC--cceEEEEEEe--C-CcEEEEeCCCCccccCChhHHHHH
Confidence 444557899999999999999999999875 445555666 7777654433 2 379999999986433322222234
Q ss_pred HHHHHHHhh---ccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcC--cHHHHHHHHHhcCC-C
Q 007334 194 AGMTANVLA---KTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTG--SLAGAAAESLMLGF-G 267 (607)
Q Consensus 194 ~~~~~~~~~---~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~--~~~~~~~~~~~~~~-~ 267 (607)
......++. .+|++++|+|++.+.+..+..+.+++... ++|+++|+||+|+...... ..+.....+...+. .
T Consensus 88 ~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~--~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~ 165 (179)
T TIGR03598 88 QKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRER--GIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDP 165 (179)
T ss_pred HHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHc--CCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCC
Confidence 444444554 45799999999998888887777777765 7899999999999753211 11222223333332 2
Q ss_pred CcEEeecCCCCChH
Q 007334 268 DPIAISAETGLGMT 281 (607)
Q Consensus 268 ~~i~iSA~~g~gi~ 281 (607)
+++++||++|+|++
T Consensus 166 ~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 166 SVQLFSSLKKTGID 179 (179)
T ss_pred ceEEEECCCCCCCC
Confidence 78999999999984
No 124
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.82 E-value=8.9e-20 Score=170.78 Aligned_cols=144 Identities=23% Similarity=0.246 Sum_probs=101.5
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||+++++.. .....+++|+.+.....+..++. .+.||||||..+.. .. ...+
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------~~-~~~~ 69 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQG--IFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFT---------AM-RDLY 69 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhC--CCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccch---------hH-HHHH
Confidence 68999999999999999999954 23445666666666666667665 45689999964331 11 2346
Q ss_pred HhhccEEEEEeccchh-----------hH----HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV-----------RA----VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~-----------~~----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
++.+|++++|+|.++. .. ...+.|+++|+||+|+.+...... +.. ..+.+. .+.
T Consensus 70 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~-----~~~~~~----~~~ 138 (164)
T cd04175 70 MKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGK--EQG-----QNLARQ----WGC 138 (164)
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcH--HHH-----HHHHHH----hCC
Confidence 7889999999999764 11 124689999999999976432111 000 111111 246
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+++++||++|.|++++|.++.+.+
T Consensus 139 ~~~~~Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 139 AFLETSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred EEEEeeCCCCCCHHHHHHHHHHHh
Confidence 899999999999999999987654
No 125
>PRK00089 era GTPase Era; Reviewed
Probab=99.82 E-value=1.6e-19 Score=185.52 Aligned_cols=156 Identities=28% Similarity=0.379 Sum_probs=116.3
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHh
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLM 404 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~ 404 (607)
-.|+++|+||||||||+|+|+|...+.+++.++||++...+....++.++.+|||||+.+... .........+..++.
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~--~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKR--ALNRAMNKAAWSSLK 83 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchh--HHHHHHHHHHHHHHh
Confidence 469999999999999999999998889999999999988777666678999999999865421 112222344566788
Q ss_pred hccEEEEEeccchh---------h-HHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEccc
Q 007334 405 RAHVVALVLDAEEV---------R-AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSA 474 (607)
Q Consensus 405 ~ad~~llViD~~~~---------~-~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA 474 (607)
.+|++++|+|+++. . ....++|+++|+||+|+..... .. .... ..+.+. ....+++++||
T Consensus 84 ~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~~--~l-~~~~----~~l~~~---~~~~~i~~iSA 153 (292)
T PRK00089 84 DVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDKE--EL-LPLL----EELSEL---MDFAEIVPISA 153 (292)
T ss_pred cCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCCHH--HH-HHHH----HHHHhh---CCCCeEEEecC
Confidence 99999999999873 1 1123689999999999974311 11 1111 112211 22468999999
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 007334 475 LEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 475 ~~g~gv~~l~~~i~~~~~ 492 (607)
++|.|++++++.+.+.+.
T Consensus 154 ~~~~gv~~L~~~L~~~l~ 171 (292)
T PRK00089 154 LKGDNVDELLDVIAKYLP 171 (292)
T ss_pred CCCCCHHHHHHHHHHhCC
Confidence 999999999999988764
No 126
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.82 E-value=2.7e-19 Score=171.64 Aligned_cols=159 Identities=17% Similarity=0.185 Sum_probs=114.0
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.+|||||||+|+|++..+.... .+. .+.+.....+..++ ..+.+|||||.. .+...+.
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~-~~t--~~~~~~~~~~~~~~~~~~~~i~Dt~g~~----------~~~~~~~ 67 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSEST-KST--IGVDFKIKTVYIENKIIKLQIWDTNGQE----------RFRSLNN 67 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCC-CCc--eeeEEEEEEEEECCEEEEEEEEECCCcH----------HHHhhHH
Confidence 37999999999999999999987653211 121 33444434444444 567899999987 4555667
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHH-HHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAET 276 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~ 276 (607)
.++..+|++++|+|++++.+..... +...+... ..+.|+++|+||+|+..................++ +++++||++
T Consensus 68 ~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~evSa~~ 146 (188)
T cd04125 68 SYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNI-PFFETSAKQ 146 (188)
T ss_pred HHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCC-eEEEEeCCC
Confidence 7899999999999999876655422 23333332 23579999999999986554444444444455566 789999999
Q ss_pred CCChHHHHHHhccchHH
Q 007334 277 GLGMTELYEALRPSVED 293 (607)
Q Consensus 277 g~gi~eL~~~i~~~l~~ 293 (607)
|.|++++++.+.+.+..
T Consensus 147 ~~~i~~~f~~l~~~~~~ 163 (188)
T cd04125 147 SINVEEAFILLVKLIIK 163 (188)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999887754
No 127
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.82 E-value=9.2e-20 Score=172.34 Aligned_cols=155 Identities=15% Similarity=0.137 Sum_probs=108.9
Q ss_pred EEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHHHH
Q 007334 123 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTANV 200 (607)
Q Consensus 123 V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 200 (607)
|+|+|.+|||||||++++++..+.. .... +..+.....+..++ ..+.+|||||+. ++......+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~~ 66 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPE--DYVP--TVFENYSADVEVDGKPVELGLWDTAGQE----------DYDRLRPLS 66 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCC--CCCC--cEEeeeeEEEEECCEEEEEEEEECCCCc----------ccchhchhh
Confidence 5899999999999999999876532 1121 23333333444444 468999999987 333444557
Q ss_pred hhccCEEEEEEecCCCCCHhHH--HHHHHHHhhCCCCcEEEEecCCCcccCCc------------CcHHHHHHHHHhcCC
Q 007334 201 LAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHNGT------------GSLAGAAAESLMLGF 266 (607)
Q Consensus 201 ~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~D~~~~~~------------~~~~~~~~~~~~~~~ 266 (607)
+..+|++|+|+|++++.+.++. .+...+.+..++.|+++|+||+|+..... ....+........+.
T Consensus 67 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 146 (174)
T smart00174 67 YPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGA 146 (174)
T ss_pred cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCC
Confidence 8899999999999987666553 23444444456899999999999875321 223333344555665
Q ss_pred CCcEEeecCCCCChHHHHHHhccch
Q 007334 267 GDPIAISAETGLGMTELYEALRPSV 291 (607)
Q Consensus 267 ~~~i~iSA~~g~gi~eL~~~i~~~l 291 (607)
..++++||++|.|++++++.+.+.+
T Consensus 147 ~~~~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 147 VKYLECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHh
Confidence 4789999999999999999987543
No 128
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.82 E-value=1.6e-19 Score=186.89 Aligned_cols=151 Identities=24% Similarity=0.318 Sum_probs=112.6
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC-eEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG-RTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~-~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
..|++||.||||||||+|+|++.. ..++++|+||.++..+.+.+++ .++.||||||+.+..... ..+ ....++++
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~-~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~--~gL-g~~flrhi 233 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEG--AGL-GHRFLKHI 233 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCC-ccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCccc--ccH-HHHHHHHH
Confidence 479999999999999999999764 5688999999999999888877 899999999987542111 011 23456778
Q ss_pred hhccEEEEEeccchh--------------h--HH---hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCC
Q 007334 404 MRAHVVALVLDAEEV--------------R--AV---EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQV 464 (607)
Q Consensus 404 ~~ad~~llViD~~~~--------------~--~~---~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (607)
.++|++|+|+|+++. + .. ..++|+++|+||+|+.+... .+.+. +++.+.
T Consensus 234 erad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~----~~~~~----~~l~~~---- 301 (329)
T TIGR02729 234 ERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE----LAELL----KELKKA---- 301 (329)
T ss_pred HhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH----HHHHH----HHHHHH----
Confidence 899999999999842 0 11 13689999999999976421 11111 122211
Q ss_pred CCCCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 465 TGIPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 465 ~~~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
.+.+++++||++++|++++++.+.+.+
T Consensus 302 ~~~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 302 LGKPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred cCCcEEEEEccCCcCHHHHHHHHHHHh
Confidence 246899999999999999999887643
No 129
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.82 E-value=3.5e-19 Score=170.60 Aligned_cols=158 Identities=12% Similarity=0.049 Sum_probs=111.3
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC---CeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG---DLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
+|+++|.+|||||||+++|++.... ..... ++.+.....+... ...+.+|||||++ ++.....
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~--~~~~~--t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~----------~~~~~~~ 67 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFP--EEYVP--TVFENYVTNIQGPNGKIIELALWDTAGQE----------EYDRLRP 67 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCC--CCCCC--eeeeeeEEEEEecCCcEEEEEEEECCCch----------hHHHHHH
Confidence 7999999999999999999987642 22221 2222222233332 3578999999987 4555556
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHH--HHHHHHhhCCCCcEEEEecCCCcccCC----cCcHHHHHHHHHhcCCCCcEEe
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLE--VGKWLRKHAPQIKPIVAMNKCESLHNG----TGSLAGAAAESLMLGFGDPIAI 272 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~--~~~~l~~~~~~~p~ilV~NK~D~~~~~----~~~~~~~~~~~~~~~~~~~i~i 272 (607)
.++..+|++++|+|++++.+.++.. +...+....++.|+++|+||+|+.... .....+........+..+++++
T Consensus 68 ~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 147 (187)
T cd04132 68 LSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLEC 147 (187)
T ss_pred HhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEc
Confidence 6789999999999999877666532 222233334578999999999987542 1223344444555666578999
Q ss_pred ecCCCCChHHHHHHhccchHH
Q 007334 273 SAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 273 SA~~g~gi~eL~~~i~~~l~~ 293 (607)
||++|.|++++++.+.+.+..
T Consensus 148 Sa~~~~~v~~~f~~l~~~~~~ 168 (187)
T cd04132 148 SAKTMENVEEVFDTAIEEALK 168 (187)
T ss_pred cCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999877654
No 130
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=9.6e-20 Score=168.74 Aligned_cols=160 Identities=19% Similarity=0.257 Sum_probs=129.3
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHH
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGM 196 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~ 196 (607)
..++|+++|.++||||-|+-+++...+..-+..+ ...++....+.+++ .+.+||||+|++ ++...
T Consensus 13 ylFKiVliGDS~VGKsnLlsRftrnEF~~~SksT---IGvef~t~t~~vd~k~vkaqIWDTAGQE----------RyrAi 79 (222)
T KOG0087|consen 13 YLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKST---IGVEFATRTVNVDGKTVKAQIWDTAGQE----------RYRAI 79 (222)
T ss_pred eEEEEEEeCCCccchhHHHHHhcccccCcccccc---eeEEEEeeceeecCcEEEEeeecccchh----------hhccc
Confidence 4688999999999999999999988775433222 34444444445554 578999999999 88888
Q ss_pred HHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhh----CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEe
Q 007334 197 TANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH----APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAI 272 (607)
Q Consensus 197 ~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~----~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~i 272 (607)
+..|++.|.++++|+|++...+++. +.+||+++ .+++++++|+||+||...+.+..++....+...++ .++++
T Consensus 80 tSaYYrgAvGAllVYDITr~~Tfen--v~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l-~f~Et 156 (222)
T KOG0087|consen 80 TSAYYRGAVGALLVYDITRRQTFEN--VERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGL-FFLET 156 (222)
T ss_pred cchhhcccceeEEEEechhHHHHHH--HHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCc-eEEEe
Confidence 9999999999999999999888885 55666654 36889999999999999877777777777777777 78999
Q ss_pred ecCCCCChHHHHHHhccchHHH
Q 007334 273 SAETGLGMTELYEALRPSVEDY 294 (607)
Q Consensus 273 SA~~g~gi~eL~~~i~~~l~~~ 294 (607)
||..+.++++.|+.+...+...
T Consensus 157 SAl~~tNVe~aF~~~l~~I~~~ 178 (222)
T KOG0087|consen 157 SALDATNVEKAFERVLTEIYKI 178 (222)
T ss_pred cccccccHHHHHHHHHHHHHHH
Confidence 9999999999998887766543
No 131
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.82 E-value=3.1e-19 Score=166.12 Aligned_cols=142 Identities=25% Similarity=0.283 Sum_probs=99.4
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||+|+|++.. ....+.+++.+.....+.+++. .+.+|||||..+. ..+ ...+
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~---------~~l-~~~~ 69 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY---------SAM-RDQY 69 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcch---------HHH-HHHH
Confidence 589999999999999999999764 2334555555555555666665 4668999996432 112 2357
Q ss_pred HhhccEEEEEeccchh-----------hHH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~-----------~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
++.+|++++|+|.++. ... ..++|+++|+||+|+.+.......... +.+ ..+.
T Consensus 70 ~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~--------~~~----~~~~ 137 (162)
T cd04138 70 MRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQD--------LAK----SYGI 137 (162)
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHH--------HHH----HhCC
Confidence 7789999999999864 011 247899999999999763211111111 111 1256
Q ss_pred CEEEcccCCCCCHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
+++++||++|.|++++|+.+.+.
T Consensus 138 ~~~~~Sa~~~~gi~~l~~~l~~~ 160 (162)
T cd04138 138 PYIETSAKTRQGVEEAFYTLVRE 160 (162)
T ss_pred eEEEecCCCCCCHHHHHHHHHHH
Confidence 89999999999999999998764
No 132
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.82 E-value=3.1e-19 Score=171.71 Aligned_cols=157 Identities=14% Similarity=0.116 Sum_probs=111.6
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.+|||||||+++++...+. ..... +..+.....+.+++ ..+.+|||+|++ ++.....
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f~--~~~~~--t~~~~~~~~~~~~~~~~~l~i~Dt~G~e----------~~~~l~~ 69 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAFP--KEYIP--TVFDNYSAQTAVDGRTVSLNLWDTAGQE----------EYDRLRT 69 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCC--cCCCC--ceEeeeEEEEEECCEEEEEEEEECCCch----------hhhhhhh
Confidence 58999999999999999999987642 11111 22222222233333 578999999998 5556667
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHH--HHHHHHhhCCCCcEEEEecCCCcccCCc------------CcHHHHHHHHHhc
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLE--VGKWLRKHAPQIKPIVAMNKCESLHNGT------------GSLAGAAAESLML 264 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~--~~~~l~~~~~~~p~ilV~NK~D~~~~~~------------~~~~~~~~~~~~~ 264 (607)
.++..||++|+|+|++++.+.+... +...+....++.|+++|+||+|+..... ...++....+...
T Consensus 70 ~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~ 149 (191)
T cd01875 70 LSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQI 149 (191)
T ss_pred hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHc
Confidence 7899999999999999987776632 3333444446799999999999965421 2223333344455
Q ss_pred CCCCcEEeecCCCCChHHHHHHhccch
Q 007334 265 GFGDPIAISAETGLGMTELYEALRPSV 291 (607)
Q Consensus 265 ~~~~~i~iSA~~g~gi~eL~~~i~~~l 291 (607)
+...++++||++|+|++++|+.+.+.+
T Consensus 150 ~~~~~~e~SAk~g~~v~e~f~~l~~~~ 176 (191)
T cd01875 150 HAVKYLECSALNQDGVKEVFAEAVRAV 176 (191)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 544789999999999999999998655
No 133
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.82 E-value=2.3e-19 Score=173.09 Aligned_cols=149 Identities=21% Similarity=0.284 Sum_probs=105.3
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeecc---------------CCCCceeeeeEEEEeeeCCeeEEEecCCCCcccc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYN---------------TPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEA 184 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~---------------~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~ 184 (607)
..+|+++|.+|||||||+|+|++........ ..+ +|.......+...+..+.+|||||+.
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g--~t~~~~~~~~~~~~~~~~l~DtpG~~--- 76 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERG--ITILAKNTAVTYKDTKINIVDTPGHA--- 76 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcc--cccccceeEEEECCEEEEEEECCCcH---
Confidence 3589999999999999999999732211111 122 55566666677788999999999998
Q ss_pred CchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcH-HHHHHHHHh
Q 007334 185 TSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSL-AGAAAESLM 263 (607)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~-~~~~~~~~~ 263 (607)
++...+..++..+|++++|+|++++.......+...+... ++|+++|+||+|+........ .+....+..
T Consensus 77 -------~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~--~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~ 147 (194)
T cd01891 77 -------DFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALEL--GLKPIVVINKIDRPDARPEEVVDEVFDLFIE 147 (194)
T ss_pred -------HHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHc--CCCEEEEEECCCCCCCCHHHHHHHHHHHHHH
Confidence 5666777889999999999999987655554455554443 789999999999975432111 112222212
Q ss_pred -------cCCCCcEEeecCCCCChHHH
Q 007334 264 -------LGFGDPIAISAETGLGMTEL 283 (607)
Q Consensus 264 -------~~~~~~i~iSA~~g~gi~eL 283 (607)
.++ +++++||++|.|+.++
T Consensus 148 ~~~~~~~~~~-~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 148 LGATEEQLDF-PVLYASAKNGWASLNL 173 (194)
T ss_pred hCCccccCcc-CEEEeehhcccccccc
Confidence 234 6799999999887554
No 134
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.82 E-value=1.9e-19 Score=205.42 Aligned_cols=170 Identities=23% Similarity=0.317 Sum_probs=128.3
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHH--HH
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTA--GM 196 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~--~~ 196 (607)
..++|+|+|+||||||||+|+|++.+..++++.++ +|++.....+.+++..+.+|||||+.......... +++ ..
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~g--tT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~-e~~~~~r 525 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAG--TTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGA-EYYSSLR 525 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCC--CCcCcceeEEEECCCEEEEEECCCcccCcccchhH-HHHHHHH
Confidence 35899999999999999999999988777888888 99999888888899999999999986432221111 222 12
Q ss_pred HHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCc-HHHHHH-HHHhcCCCCcEEeec
Q 007334 197 TANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGS-LAGAAA-ESLMLGFGDPIAISA 274 (607)
Q Consensus 197 ~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~-~~~~~~-~~~~~~~~~~i~iSA 274 (607)
+..++..+|++++|+|++++.+.++..+...+.+. ++|+++|+||+|+....... ...... .+....+.+++++||
T Consensus 526 ~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~--~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSA 603 (712)
T PRK09518 526 TQAAIERSELALFLFDASQPISEQDLKVMSMAVDA--GRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSA 603 (712)
T ss_pred HHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHc--CCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEEC
Confidence 45668999999999999999999987777666654 78999999999997532110 011111 111223446799999
Q ss_pred CCCCChHHHHHHhccchHH
Q 007334 275 ETGLGMTELYEALRPSVED 293 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~~l~~ 293 (607)
++|.|+++|++.+.+.++.
T Consensus 604 ktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 604 KTGWHTNRLAPAMQEALES 622 (712)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999887654
No 135
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.82 E-value=4.4e-19 Score=176.91 Aligned_cols=156 Identities=14% Similarity=0.165 Sum_probs=109.3
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
+|+++|.+|||||||++++++..+. ..... ++.+.....+.+++ ..+.||||+|.. .+......
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~--~~y~p--Ti~d~~~k~~~i~~~~~~l~I~Dt~G~~----------~~~~~~~~ 67 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFE--EQYTP--TIEDFHRKLYSIRGEVYQLDILDTSGNH----------PFPAMRRL 67 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCC--CCCCC--ChhHhEEEEEEECCEEEEEEEEECCCCh----------hhhHHHHH
Confidence 6999999999999999999977652 22222 44455555555555 568899999987 33344455
Q ss_pred HhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh----------CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH----------APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGD 268 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~----------~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~ 268 (607)
++..+|++|+|+|+++..+.++. .+.+++... ..+.|+|+|+||+|+...+....++....+.......
T Consensus 68 ~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~ 147 (247)
T cd04143 68 SILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCA 147 (247)
T ss_pred HhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCE
Confidence 67899999999999987666552 244444321 2468999999999997644443333333322221126
Q ss_pred cEEeecCCCCChHHHHHHhccch
Q 007334 269 PIAISAETGLGMTELYEALRPSV 291 (607)
Q Consensus 269 ~i~iSA~~g~gi~eL~~~i~~~l 291 (607)
++++||++|.|++++++.|....
T Consensus 148 ~~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 148 YFEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHh
Confidence 79999999999999999998644
No 136
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.82 E-value=3.8e-19 Score=165.99 Aligned_cols=156 Identities=21% Similarity=0.221 Sum_probs=109.4
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC--CeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG--DLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|++|||||||+++++.... +.+..+ ++.+........+ ...+.+|||||+. .+.....
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~~ 66 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEF--VEDYEP--TKADSYRKKVVLDGEDVQLNILDTAGQE----------DYAAIRD 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC--ccccCC--cchhhEEEEEEECCEEEEEEEEECCChh----------hhhHHHH
Confidence 3799999999999999999997654 223333 4444433333444 3579999999987 4445556
Q ss_pred HHhhccCEEEEEEecCCCCCHhHH-HH-HHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDL-EV-GKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~-~~-~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
.++..+|++++|+|++++.+.... .+ ..+++.. ..++|+++|+||+|+.................++. +++++||+
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 145 (164)
T cd04139 67 NYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGV-PYVETSAK 145 (164)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCC-eEEEeeCC
Confidence 788999999999999876554431 22 2333221 24799999999999976333333333344445565 78999999
Q ss_pred CCCChHHHHHHhccch
Q 007334 276 TGLGMTELYEALRPSV 291 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l 291 (607)
+|.|++++++.|.+.+
T Consensus 146 ~~~gi~~l~~~l~~~~ 161 (164)
T cd04139 146 TRQNVEKAFYDLVREI 161 (164)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999987654
No 137
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.82 E-value=1.3e-19 Score=169.46 Aligned_cols=145 Identities=25% Similarity=0.286 Sum_probs=100.7
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||+|++++.. ....+.+++.+.....+..++. .+.+|||||+.+.. .. ...+
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~---------~~-~~~~ 68 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGH--FVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFS---------AM-RDQY 68 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCc--CCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccch---------HH-HHHH
Confidence 489999999999999999999764 2334445555655555566654 56799999965432 11 2346
Q ss_pred HhhccEEEEEeccchhh-----------HH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEVR-----------AV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~~-----------~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
++.+|++++|+|+++.. .. ..++|+++|+||+|+.+...... +.. ..+.+ ..+.
T Consensus 69 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~--~~~-----~~~~~----~~~~ 137 (164)
T smart00173 69 MRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVST--EEG-----KELAR----QWGC 137 (164)
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcH--HHH-----HHHHH----HcCC
Confidence 77899999999998750 01 13689999999999976422111 000 11111 1247
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
+++++||++|.|++++|+.+.+.+.
T Consensus 138 ~~~~~Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 138 PFLETSAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred EEEEeecCCCCCHHHHHHHHHHHHh
Confidence 8999999999999999999987654
No 138
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.82 E-value=5.2e-19 Score=170.67 Aligned_cols=172 Identities=23% Similarity=0.298 Sum_probs=118.9
Q ss_pred ccccccCCCEEEEecCCCCchhHHHHHhhccc-eeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHH
Q 007334 113 TKIDINLLPTVMIIGRPNVGKSALFNRLIRRR-EALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILD 191 (607)
Q Consensus 113 ~~~~~~~~~~V~ivG~~nvGKSSL~n~L~~~~-~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~ 191 (607)
+..+.+..++|+|+|.+|||||||+|+|++.+ .+.++..++ +|++...... +..+.+|||||+...........
T Consensus 17 ~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~--~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~ 91 (196)
T PRK00454 17 EQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPG--RTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKE 91 (196)
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCC--ceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHH
Confidence 33444567899999999999999999999875 444555565 7776654332 47899999999864322222223
Q ss_pred HHHHHHHHHhhc---cCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcH--HHHHHHHHhcCC
Q 007334 192 RTAGMTANVLAK---TQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSL--AGAAAESLMLGF 266 (607)
Q Consensus 192 ~~~~~~~~~~~~---ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~--~~~~~~~~~~~~ 266 (607)
++......++.. ++++++|+|++.+.+..+.++.+++... ++|+++|+||+|+........ ......+... .
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~--~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~-~ 168 (196)
T PRK00454 92 KWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEY--GIPVLIVLTKADKLKKGERKKQLKKVRKALKFG-D 168 (196)
T ss_pred HHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHc--CCcEEEEEECcccCCHHHHHHHHHHHHHHHHhc-C
Confidence 344444445554 4688999999988887776777787765 789999999999976432111 1111122222 2
Q ss_pred CCcEEeecCCCCChHHHHHHhccchH
Q 007334 267 GDPIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 267 ~~~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
..++++||++|.|++++++.|.+.+.
T Consensus 169 ~~~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 169 DEVILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 37899999999999999999876653
No 139
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=5.6e-20 Score=167.77 Aligned_cols=147 Identities=20% Similarity=0.214 Sum_probs=112.5
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
..||+++|..+|||||||+++... .+.....+.+..|.....+.+.|+ +++||||||+.+++ ...-.
T Consensus 22 ~~KlVflGdqsVGKTslItRf~yd-~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFr----------slips 90 (221)
T KOG0094|consen 22 KYKLVFLGDQSVGKTSLITRFMYD-KFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR----------SLIPS 90 (221)
T ss_pred EEEEEEEccCccchHHHHHHHHHh-hhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHh----------hhhhh
Confidence 379999999999999999999955 455566677888998888888887 55699999976663 22347
Q ss_pred HHhhccEEEEEeccchh-------hH----Hh----cCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEV-------RA----VE----EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~-------~~----~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
|++++.++|+|||.++. .. .. .+.-+++|+||.||.++++ +..+.++..+...+
T Consensus 91 Y~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrq-----------vs~eEg~~kAkel~ 159 (221)
T KOG0094|consen 91 YIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQ-----------VSIEEGERKAKELN 159 (221)
T ss_pred hccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhh-----------hhHHHHHHHHHHhC
Confidence 89999999999999986 11 11 1355789999999998733 22333333344456
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
+-++++||+.|.||.++|..|...+.
T Consensus 160 a~f~etsak~g~NVk~lFrrIaa~l~ 185 (221)
T KOG0094|consen 160 AEFIETSAKAGENVKQLFRRIAAALP 185 (221)
T ss_pred cEEEEecccCCCCHHHHHHHHHHhcc
Confidence 78999999999999999998776543
No 140
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.82 E-value=1.6e-19 Score=169.40 Aligned_cols=146 Identities=23% Similarity=0.270 Sum_probs=102.6
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||++++++.. ......++++.+.....+..++. .+.+|||||..+.. .....+
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----------~~~~~~ 71 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDT-YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR----------TITSSY 71 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHH----------HHHHHH
Confidence 689999999999999999999764 33344555555555555666654 67899999954321 122456
Q ss_pred HhhccEEEEEeccchhh----------H---H-hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEVR----------A---V-EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 403 i~~ad~~llViD~~~~~----------~---~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
++.+|++|+|+|+++.. . . ..+.|+++|+||+|+....... .+.. .... ...+++
T Consensus 72 ~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~--~~~~-----~~~~----~~~~~~ 140 (166)
T cd01869 72 YRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVD--YSEA-----QEFA----DELGIP 140 (166)
T ss_pred hCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCC--HHHH-----HHHH----HHcCCe
Confidence 77899999999998751 0 1 1468999999999987543211 0111 0111 123578
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
++++||++|.|++++|+.+.+.+.
T Consensus 141 ~~~~Sa~~~~~v~~~~~~i~~~~~ 164 (166)
T cd01869 141 FLETSAKNATNVEQAFMTMAREIK 164 (166)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHH
Confidence 999999999999999999987653
No 141
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.82 E-value=5.4e-19 Score=166.51 Aligned_cols=159 Identities=18% Similarity=0.222 Sum_probs=110.7
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
+|+++|++|||||||+|+|++....... .+. .+.+.....+.+.+ ..+.+|||||+. .+......
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~-~~t--~~~~~~~~~~~~~~~~~~~~~~D~~g~~----------~~~~~~~~ 68 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQY-KAT--IGADFLTKEVTVDDKLVTLQIWDTAGQE----------RFQSLGVA 68 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCc-CCc--cceEEEEEEEEECCEEEEEEEEeCCChH----------HHHhHHHH
Confidence 7999999999999999999987643211 111 33344444444444 457799999986 44455667
Q ss_pred HhhccCEEEEEEecCCCCCHhHH-HHHHH-HHhh----CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEee
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDL-EVGKW-LRKH----APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAIS 273 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~-~~~~~-l~~~----~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iS 273 (607)
+++.+|++|+|+|++++.+.... .+.+. +... ..++|+++|+||+|+........+.........+..+++++|
T Consensus 69 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S 148 (172)
T cd01862 69 FYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETS 148 (172)
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEE
Confidence 88999999999999887654432 12222 2221 126899999999999853333334444445555645789999
Q ss_pred cCCCCChHHHHHHhccchHH
Q 007334 274 AETGLGMTELYEALRPSVED 293 (607)
Q Consensus 274 A~~g~gi~eL~~~i~~~l~~ 293 (607)
|++|.|++++++.|.+.+.+
T Consensus 149 a~~~~gv~~l~~~i~~~~~~ 168 (172)
T cd01862 149 AKEAINVEQAFETIARKALE 168 (172)
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999876543
No 142
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.82 E-value=3.4e-19 Score=174.09 Aligned_cols=159 Identities=25% Similarity=0.351 Sum_probs=116.2
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC---CeeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG---DLRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
.+|+++|.+|||||||+|+|++........ +. ++.+.....+.+. ...+.+|||||+. .+....
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~-~t--i~~d~~~~~i~~~~~~~~~l~i~Dt~G~~----------~~~~~~ 69 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSD-PT--VGVDFFSRLIEIEPGVRIKLQLWDTAGQE----------RFRSIT 69 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCC-ce--eceEEEEEEEEECCCCEEEEEEEeCCcch----------hHHHHH
Confidence 589999999999999999999876543322 21 4445544444442 3578999999987 455566
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHHHHHHHHHh---h-C-CCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEe
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRK---H-A-PQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAI 272 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~---~-~-~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~i 272 (607)
..++..+|++++|+|++++.+..+ +.+|+.. . . ...|+++|+||+|+..................+. .++++
T Consensus 70 ~~~~~~~d~iilv~D~~~~~Sf~~--l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~ 146 (211)
T cd04111 70 RSYYRNSVGVLLVFDITNRESFEH--VHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGM-KYIET 146 (211)
T ss_pred HHHhcCCcEEEEEEECCCHHHHHH--HHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCC-EEEEE
Confidence 778999999999999998766555 3334432 2 1 2467899999999987554444444445555665 78999
Q ss_pred ecCCCCChHHHHHHhccchHHHH
Q 007334 273 SAETGLGMTELYEALRPSVEDYM 295 (607)
Q Consensus 273 SA~~g~gi~eL~~~i~~~l~~~~ 295 (607)
||++|.|++++++.|.+.+.+.+
T Consensus 147 Sak~g~~v~e~f~~l~~~~~~~~ 169 (211)
T cd04111 147 SARTGDNVEEAFELLTQEIYERI 169 (211)
T ss_pred eCCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999998776543
No 143
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.82 E-value=8.3e-20 Score=158.45 Aligned_cols=159 Identities=21% Similarity=0.299 Sum_probs=130.5
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHH
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGM 196 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~ 196 (607)
.+++.+|+|.|+||||||+-++....+.-. +. .++..|.....+++.| .+++||||+|++ +|..+
T Consensus 7 hLfkllIigDsgVGKssLl~rF~ddtFs~s--Yi-tTiGvDfkirTv~i~G~~VkLqIwDtAGqE----------rFrti 73 (198)
T KOG0079|consen 7 HLFKLLIIGDSGVGKSSLLLRFADDTFSGS--YI-TTIGVDFKIRTVDINGDRVKLQIWDTAGQE----------RFRTI 73 (198)
T ss_pred HHHHHHeecCCcccHHHHHHHHhhcccccc--eE-EEeeeeEEEEEeecCCcEEEEEEeecccHH----------HHHHH
Confidence 356789999999999999999987644221 11 2245677888888766 578999999999 88889
Q ss_pred HHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhh---CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEee
Q 007334 197 TANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH---APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAIS 273 (607)
Q Consensus 197 ~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~---~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iS 273 (607)
+..+++..+++++|+|++++.++.. +.+||++. .+..|-++|+||.|....+.+..++...++...|+ +.|++|
T Consensus 74 tstyyrgthgv~vVYDVTn~ESF~N--v~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgi-e~FETS 150 (198)
T KOG0079|consen 74 TSTYYRGTHGVIVVYDVTNGESFNN--VKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGI-ELFETS 150 (198)
T ss_pred HHHHccCCceEEEEEECcchhhhHh--HHHHHHHHHhcCccccceecccCCCCccceeeehHHHHHHHHhcCc-hheehh
Confidence 9999999999999999999888876 55666654 56788999999999998877777777778888888 899999
Q ss_pred cCCCCChHHHHHHhccchHH
Q 007334 274 AETGLGMTELYEALRPSVED 293 (607)
Q Consensus 274 A~~g~gi~eL~~~i~~~l~~ 293 (607)
|+..++++..|..|.+.+..
T Consensus 151 aKe~~NvE~mF~cit~qvl~ 170 (198)
T KOG0079|consen 151 AKENENVEAMFHCITKQVLQ 170 (198)
T ss_pred hhhcccchHHHHHHHHHHHH
Confidence 99999999999999876543
No 144
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.82 E-value=1.4e-19 Score=173.89 Aligned_cols=157 Identities=20% Similarity=0.213 Sum_probs=108.6
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
+|+++|.+|||||||++++++..+.... .| +..+.....+..++ ..+.+|||+|++ ++......
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~-~~---t~~~~~~~~i~~~~~~~~l~i~Dt~G~~----------~~~~l~~~ 67 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVY-EP---TVFENYVHDIFVDGLHIELSLWDTAGQE----------EFDRLRSL 67 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCcc-CC---cceeeeEEEEEECCEEEEEEEEECCCCh----------hccccccc
Confidence 7999999999999999999987653221 11 11122222233333 579999999987 33334445
Q ss_pred HhhccCEEEEEEecCCCCCHhHHH--HHHHHHhhCCCCcEEEEecCCCcccCCc------------CcHHHHHHHHHhcC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDLE--VGKWLRKHAPQIKPIVAMNKCESLHNGT------------GSLAGAAAESLMLG 265 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~~--~~~~l~~~~~~~p~ilV~NK~D~~~~~~------------~~~~~~~~~~~~~~ 265 (607)
++..+|++++|+|+++..+..... +...+....++.|+++|+||+|+..... ...++....+...+
T Consensus 68 ~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 147 (189)
T cd04134 68 SYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRIN 147 (189)
T ss_pred cccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcC
Confidence 788999999999999987776532 4444544456789999999999976432 11222333334444
Q ss_pred CCCcEEeecCCCCChHHHHHHhccchH
Q 007334 266 FGDPIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 266 ~~~~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
...++++||++|.|++++|++|.+.+.
T Consensus 148 ~~~~~e~SAk~~~~v~e~f~~l~~~~~ 174 (189)
T cd04134 148 ALRYLECSAKLNRGVNEAFTEAARVAL 174 (189)
T ss_pred CCEEEEccCCcCCCHHHHHHHHHHHHh
Confidence 336799999999999999999986553
No 145
>PLN03110 Rab GTPase; Provisional
Probab=99.82 E-value=5.4e-19 Score=173.38 Aligned_cols=161 Identities=19% Similarity=0.229 Sum_probs=118.0
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+++|.+|||||||+++|++...... ..+. +..+.....+.+++ ..+.||||||+. ++...+
T Consensus 12 ~~Ki~ivG~~~vGKStLi~~l~~~~~~~~-~~~t--~g~~~~~~~v~~~~~~~~l~l~Dt~G~~----------~~~~~~ 78 (216)
T PLN03110 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLE-SKST--IGVEFATRTLQVEGKTVKAQIWDTAGQE----------RYRAIT 78 (216)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCC-CCCc--eeEEEEEEEEEECCEEEEEEEEECCCcH----------HHHHHH
Confidence 56899999999999999999998765321 1222 44455555555554 589999999987 566667
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..+++.+|++|+|+|++++.+.+.. .+...+++. ..+.|+++|+||+|+...+....+.........++ +++++||+
T Consensus 79 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~-~~~e~SA~ 157 (216)
T PLN03110 79 SAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGL-SFLETSAL 157 (216)
T ss_pred HHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCC-EEEEEeCC
Confidence 7889999999999999987666542 233333333 23689999999999876554444444444444555 78999999
Q ss_pred CCCChHHHHHHhccchHHH
Q 007334 276 TGLGMTELYEALRPSVEDY 294 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~~~ 294 (607)
+|.|++++++.|...+...
T Consensus 158 ~g~~v~~lf~~l~~~i~~~ 176 (216)
T PLN03110 158 EATNVEKAFQTILLEIYHI 176 (216)
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999998877653
No 146
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.82 E-value=3.9e-19 Score=167.37 Aligned_cols=151 Identities=18% Similarity=0.173 Sum_probs=103.8
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
..+|+++|.+|||||||+++|...... ...|. ++.+. ..+...+..+.+|||||+. ++......
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~--~~~~t--~g~~~--~~~~~~~~~~~l~Dt~G~~----------~~~~~~~~ 72 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSV--TTIPT--VGFNV--ETVTYKNVKFNVWDVGGQD----------KIRPLWRH 72 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCc--cccCC--cccce--EEEEECCEEEEEEECCCCH----------HHHHHHHH
Confidence 468999999999999999999875542 22222 22222 2344577899999999997 45555677
Q ss_pred HhhccCEEEEEEecCCCCCHhHH--HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcC-----CCCcEE
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLG-----FGDPIA 271 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~-----~~~~i~ 271 (607)
++..+|++++|+|++++.+..+. .+.+.+... ..+.|+++|+||+|+.... ..++.. ....+. ...+++
T Consensus 73 ~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~-~~~~~~~~~~~~~~~~~ 149 (168)
T cd04149 73 YYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAM--KPHEIQ-EKLGLTRIRDRNWYVQP 149 (168)
T ss_pred HhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCC--CHHHHH-HHcCCCccCCCcEEEEE
Confidence 89999999999999986555432 222333321 2468999999999986531 122222 221111 114689
Q ss_pred eecCCCCChHHHHHHhcc
Q 007334 272 ISAETGLGMTELYEALRP 289 (607)
Q Consensus 272 iSA~~g~gi~eL~~~i~~ 289 (607)
+||++|.|+++++++|.+
T Consensus 150 ~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 150 SCATSGDGLYEGLTWLSS 167 (168)
T ss_pred eeCCCCCChHHHHHHHhc
Confidence 999999999999999864
No 147
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.81 E-value=1.6e-19 Score=170.16 Aligned_cols=158 Identities=15% Similarity=0.120 Sum_probs=108.5
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+++|.+|||||||++++++..+. +..... ++..+.....+...+ ..+.+|||+|.. .+....
T Consensus 4 ~~kv~~vG~~~vGKTsli~~~~~~~f~-~~~~~~-T~~~~~~~~~~~~~~~~~~l~~~d~~g~~----------~~~~~~ 71 (169)
T cd01892 4 VFLCFVLGAKGSGKSALLRAFLGRSFS-LNAYSP-TIKPRYAVNTVEVYGQEKYLILREVGEDE----------VAILLN 71 (169)
T ss_pred EEEEEEECCCCCcHHHHHHHHhCCCCC-cccCCC-ccCcceEEEEEEECCeEEEEEEEecCCcc----------cccccc
Confidence 578999999999999999999987653 122222 122223223344445 568899999987 333344
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..++.++|++++|+|++++.+... +..|+... ..+.|+++|+||+|+.+...............++...++++||+
T Consensus 72 ~~~~~~~d~~llv~d~~~~~s~~~--~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 149 (169)
T cd01892 72 DAELAACDVACLVYDSSDPKSFSY--CAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSK 149 (169)
T ss_pred hhhhhcCCEEEEEEeCCCHHHHHH--HHHHHHHhccCCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEec
Confidence 567899999999999988644332 34555443 23689999999999875432211112223345566557999999
Q ss_pred CCCChHHHHHHhccch
Q 007334 276 TGLGMTELYEALRPSV 291 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l 291 (607)
+|.|++++++.|.+.+
T Consensus 150 ~~~~v~~lf~~l~~~~ 165 (169)
T cd01892 150 LGDSSNELFTKLATAA 165 (169)
T ss_pred cCccHHHHHHHHHHHh
Confidence 9999999999987654
No 148
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.81 E-value=2.5e-19 Score=168.41 Aligned_cols=156 Identities=19% Similarity=0.195 Sum_probs=104.2
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEee--eCCeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAK--LGDLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~--~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.+|||||||+++++...... .... +...+.....+. .....+.+|||||+. .+.....
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~--~~~~-t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~ 67 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEK--KYVA-TLGVEVHPLDFHTNRGKIRFNVWDTAGQE----------KFGGLRD 67 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC--CCCC-ceeeEEEEEEEEECCEEEEEEEEECCCCh----------hhccccH
Confidence 379999999999999999998655321 1111 011222222222 234679999999987 2223334
Q ss_pred HHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETG 277 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g 277 (607)
.++..+|++|+|+|++++.+.... .+.+.+.....+.|+++|+||+|+.... .. ..........+. +++++||++|
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~-~~-~~~~~~~~~~~~-~~~e~Sa~~~ 144 (166)
T cd00877 68 GYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRK-VK-AKQITFHRKKNL-QYYEISAKSN 144 (166)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhccccc-CC-HHHHHHHHHcCC-EEEEEeCCCC
Confidence 567899999999999987666552 2334444444479999999999997432 22 222222223333 7899999999
Q ss_pred CChHHHHHHhccchH
Q 007334 278 LGMTELYEALRPSVE 292 (607)
Q Consensus 278 ~gi~eL~~~i~~~l~ 292 (607)
.|++++++.|.+.+.
T Consensus 145 ~~v~~~f~~l~~~~~ 159 (166)
T cd00877 145 YNFEKPFLWLARKLL 159 (166)
T ss_pred CChHHHHHHHHHHHH
Confidence 999999999986653
No 149
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=8.3e-20 Score=165.24 Aligned_cols=147 Identities=21% Similarity=0.179 Sum_probs=116.5
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.+|+.++|..+||||+|+-+++.. ++..........+.....+.++++ +++||||+|+..+. .-+..
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~k-rF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~fr----------sv~~s 74 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDK-RFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFR----------SVTRS 74 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhcc-CccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHH----------HHHHH
Confidence 479999999999999999999966 444333455667777777788776 56799999965442 34568
Q ss_pred HHhhccEEEEEeccchh--------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEV--------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~--------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
+++.|.++|||||.+.. +....+.-+++++||+||... +.+.++.++.|+...+.
T Consensus 75 yYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~r-----------R~Vs~EEGeaFA~ehgL 143 (216)
T KOG0098|consen 75 YYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEAR-----------REVSKEEGEAFAREHGL 143 (216)
T ss_pred HhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhcc-----------ccccHHHHHHHHHHcCc
Confidence 89999999999999976 112367889999999999876 34566777777777899
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
.++++||++++|+++.|......+.
T Consensus 144 ifmETSakt~~~VEEaF~nta~~Iy 168 (216)
T KOG0098|consen 144 IFMETSAKTAENVEEAFINTAKEIY 168 (216)
T ss_pred eeehhhhhhhhhHHHHHHHHHHHHH
Confidence 9999999999999999987766543
No 150
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.81 E-value=1.7e-19 Score=169.25 Aligned_cols=154 Identities=21% Similarity=0.219 Sum_probs=105.2
Q ss_pred EEEEecCCCCchhHHHHHhhcccee---eeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREA---LVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~---~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
+|+++|++|||||||+|+|++.... ....... .|.....+.+.+.+..+.+|||||+. .+.....
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~~ 68 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKIT--PTVGLNIGTIEVGNARLKFWDLGGQE----------SLRSLWD 68 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccC--CccccceEEEEECCEEEEEEECCCCh----------hhHHHHH
Confidence 4899999999999999999875321 1111122 45555556677788999999999987 4455566
Q ss_pred HHhhccCEEEEEEecCCCCCHhHH--HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHh----cCC--CCc
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLM----LGF--GDP 269 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~----~~~--~~~ 269 (607)
.++..+|++++|+|++++.+..+. .+..+++.. ..+.|+++|+||+|+..... .......+.. .+. .++
T Consensus 69 ~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 146 (167)
T cd04160 69 KYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALS--VEEIKEVFQDKAEEIGRRDCLV 146 (167)
T ss_pred HHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCC--HHHHHHHhccccccccCCceEE
Confidence 788999999999999875443331 122222221 24789999999999866422 2222222211 111 257
Q ss_pred EEeecCCCCChHHHHHHhcc
Q 007334 270 IAISAETGLGMTELYEALRP 289 (607)
Q Consensus 270 i~iSA~~g~gi~eL~~~i~~ 289 (607)
+++||++|+|+++++++|.+
T Consensus 147 ~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 147 LPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred EEeeCCCCcCHHHHHHHHhc
Confidence 99999999999999999864
No 151
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.81 E-value=3e-19 Score=202.82 Aligned_cols=156 Identities=25% Similarity=0.300 Sum_probs=117.7
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
.++|+++|+||||||||+|+|+|.+ ..+++++|+|++...+.+.+++.++.+|||||+.+........+.....+..++
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~-~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGAR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 3689999999999999999999875 578999999999999999999999999999999876321111111111122333
Q ss_pred --hhccEEEEEeccchh--------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcc
Q 007334 404 --MRAHVVALVLDAEEV--------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTS 473 (607)
Q Consensus 404 --~~ad~~llViD~~~~--------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iS 473 (607)
..+|++++|+|+++. +..+.++|+++|+||+|+.+........+.+ .+ ..++|++++|
T Consensus 82 ~~~~aD~vI~VvDat~ler~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L--------~~----~LG~pVvpiS 149 (772)
T PRK09554 82 LSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDAL--------SA----RLGCPVIPLV 149 (772)
T ss_pred hccCCCEEEEEecCCcchhhHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHH--------HH----HhCCCEEEEE
Confidence 379999999999975 3445689999999999987553332222222 11 1267999999
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q 007334 474 ALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 474 A~~g~gv~~l~~~i~~~~~ 492 (607)
|++|.|++++++.+.+...
T Consensus 150 A~~g~GIdeL~~~I~~~~~ 168 (772)
T PRK09554 150 STRGRGIEALKLAIDRHQA 168 (772)
T ss_pred eecCCCHHHHHHHHHHhhh
Confidence 9999999999998887653
No 152
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.81 E-value=1.9e-19 Score=173.22 Aligned_cols=147 Identities=20% Similarity=0.194 Sum_probs=99.4
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||++++++.+.......++++.+.....+.+++. .+.||||||..+.. .....+
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~~~ 70 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFR----------SVTHAY 70 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHH----------HhhHHH
Confidence 489999999999999999999764322223333344444444556554 67799999953321 112356
Q ss_pred HhhccEEEEEeccchhh-----------H---HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEVR-----------A---VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 403 i~~ad~~llViD~~~~~-----------~---~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
++.+|++|+|+|+++.. . ...++|+++|+||+|+........ +.. ..+.+ ..+.+
T Consensus 71 ~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~--~~~-----~~l~~----~~~~~ 139 (191)
T cd04112 71 YRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKR--EDG-----ERLAK----EYGVP 139 (191)
T ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCH--HHH-----HHHHH----HcCCe
Confidence 77899999999998751 1 123689999999999975322110 000 11111 12568
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
++++||++|.|++++|..+.+.+.
T Consensus 140 ~~e~Sa~~~~~v~~l~~~l~~~~~ 163 (191)
T cd04112 140 FMETSAKTGLNVELAFTAVAKELK 163 (191)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999987654
No 153
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.81 E-value=1.8e-19 Score=190.25 Aligned_cols=154 Identities=22% Similarity=0.257 Sum_probs=112.4
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC-eEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG-RTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~-~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
..|+|||.||||||||+|+|++.. ..++++|+||+.+..+.+.+.+ ..+.++||||+.+..... ..+ ..+..+++
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k-~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~--~~L-g~~~l~~i 235 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAK-PKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEG--AGL-GIRFLKHL 235 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCc-ccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccch--hhH-HHHHHHHH
Confidence 369999999999999999999875 5899999999999999988875 569999999987642110 011 23445788
Q ss_pred hhccEEEEEeccc---h--h---------hHHh-----cCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCC
Q 007334 404 MRAHVVALVLDAE---E--V---------RAVE-----EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQV 464 (607)
Q Consensus 404 ~~ad~~llViD~~---~--~---------~~~~-----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (607)
.++|++++|+|++ . . .... .++|+|+|+||+|+...... .+.+ .++.+.+.
T Consensus 236 ~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el---~~~l-----~~l~~~~~-- 305 (390)
T PRK12298 236 ERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA---EERA-----KAIVEALG-- 305 (390)
T ss_pred HhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH---HHHH-----HHHHHHhC--
Confidence 9999999999987 1 1 1111 36899999999999754221 1111 11111111
Q ss_pred CCCCEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 465 TGIPVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 465 ~~~~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
...+++++||+++.|++++++.|.+.+.
T Consensus 306 ~~~~Vi~ISA~tg~GIdeLl~~I~~~L~ 333 (390)
T PRK12298 306 WEGPVYLISAASGLGVKELCWDLMTFIE 333 (390)
T ss_pred CCCCEEEEECCCCcCHHHHHHHHHHHhh
Confidence 1237899999999999999998877654
No 154
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.81 E-value=2.5e-19 Score=169.48 Aligned_cols=152 Identities=16% Similarity=0.146 Sum_probs=104.8
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
.++|+++|.+|||||||+++|++.....+. .|.......+.+++..+.+|||||+. .+......
T Consensus 14 ~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~------~t~g~~~~~~~~~~~~l~l~D~~G~~----------~~~~~~~~ 77 (173)
T cd04154 14 EMRILILGLDNAGKTTILKKLLGEDIDTIS------PTLGFQIKTLEYEGYKLNIWDVGGQK----------TLRPYWRN 77 (173)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCcC------CccccceEEEEECCEEEEEEECCCCH----------HHHHHHHH
Confidence 468999999999999999999987442221 12223334445568899999999987 34445667
Q ss_pred HhhccCEEEEEEecCCCCCHhH--HHHHHHHHh-hCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhc----CCCCcEEe
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLD--LEVGKWLRK-HAPQIKPIVAMNKCESLHNGTGSLAGAAAESLML----GFGDPIAI 272 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~--~~~~~~l~~-~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~----~~~~~i~i 272 (607)
++..+|++++|+|++++.+..+ ..+..++.. ...+.|+++|+||+|+..... .++....+... ...+++++
T Consensus 78 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 155 (173)
T cd04154 78 YFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALS--EEEIREALELDKISSHHWRIQPC 155 (173)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCC--HHHHHHHhCccccCCCceEEEec
Confidence 8899999999999998754443 123333332 124789999999999875421 22222222111 11268999
Q ss_pred ecCCCCChHHHHHHhcc
Q 007334 273 SAETGLGMTELYEALRP 289 (607)
Q Consensus 273 SA~~g~gi~eL~~~i~~ 289 (607)
||++|.|++++++++.+
T Consensus 156 Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 156 SAVTGEGLLQGIDWLVD 172 (173)
T ss_pred cCCCCcCHHHHHHHHhc
Confidence 99999999999998864
No 155
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=3.4e-19 Score=154.58 Aligned_cols=162 Identities=21% Similarity=0.273 Sum_probs=130.0
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee--CCeeEEEecCCCCccccCchhHHHHHHHH
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL--GDLRFKVLDSAGLETEATSGSILDRTAGM 196 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~ 196 (607)
..+++.|+|.+.||||||+-+.++..+..... .++..|.....+.- ...++++|||+|++ ++...
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afv---sTvGidFKvKTvyr~~kRiklQiwDTagqE----------ryrti 86 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFV---STVGIDFKVKTVYRSDKRIKLQIWDTAGQE----------RYRTI 86 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhhcccccccee---eeeeeeEEEeEeeecccEEEEEEEecccch----------hhhHH
Confidence 35799999999999999999999876532111 11334444443322 34689999999999 67788
Q ss_pred HHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhh----CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEe
Q 007334 197 TANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH----APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAI 272 (607)
Q Consensus 197 ~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~----~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~i 272 (607)
|-.+++.|+++|+++|+++..+... +..|.... ..+.|+|+|+||||+..++.+..+.....+..+|+ ++|++
T Consensus 87 TTayyRgamgfiLmyDitNeeSf~s--vqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGf-efFEt 163 (193)
T KOG0093|consen 87 TTAYYRGAMGFILMYDITNEESFNS--VQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGF-EFFET 163 (193)
T ss_pred HHHHhhccceEEEEEecCCHHHHHH--HHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhCh-HHhhh
Confidence 8999999999999999998666554 44555443 45899999999999999988888888889999999 99999
Q ss_pred ecCCCCChHHHHHHhccchHHHHh
Q 007334 273 SAETGLGMTELYEALRPSVEDYML 296 (607)
Q Consensus 273 SA~~g~gi~eL~~~i~~~l~~~~~ 296 (607)
||+.+.+++++|+.+...+.+.+.
T Consensus 164 SaK~NinVk~~Fe~lv~~Ic~kms 187 (193)
T KOG0093|consen 164 SAKENINVKQVFERLVDIICDKMS 187 (193)
T ss_pred cccccccHHHHHHHHHHHHHHHhh
Confidence 999999999999999988877654
No 156
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.81 E-value=2.3e-19 Score=168.63 Aligned_cols=146 Identities=21% Similarity=0.180 Sum_probs=100.8
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.+||+++|.+|||||||++++++.. +.....+.++.+.....+.+++. .+.+|||||..+. . .....
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~-f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~---------~-~~~~~ 71 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDS-FNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERF---------R-TITTA 71 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCc-CCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHH---------H-HHHHH
Confidence 4799999999999999999999764 33333444444444445556654 6789999995432 1 12235
Q ss_pred HHhhccEEEEEeccchhh-----------H---HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEVR-----------A---VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~~-----------~---~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
+++.||++++|+|++++. . ...+.|+++|+||+|+.+..... .+... ...+ ..+.
T Consensus 72 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~-----~~~~----~~~~ 140 (167)
T cd01867 72 YYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVS--KEEGE-----ALAD----EYGI 140 (167)
T ss_pred HhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCC--HHHHH-----HHHH----HcCC
Confidence 678999999999998761 0 12468999999999998543211 11110 1111 1256
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+++++||++|.|++++|+++.+.+
T Consensus 141 ~~~~~Sa~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 141 KFLETSAKANINVEEAFFTLAKDI 164 (167)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHH
Confidence 899999999999999999998765
No 157
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.81 E-value=2e-19 Score=172.89 Aligned_cols=144 Identities=19% Similarity=0.193 Sum_probs=99.7
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeE--EEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRT--VYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
||+++|.+|||||||+++|++... ...+++++.+.....+.+++.. +.||||||..+. .. ....++
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~---------~~-~~~~~~ 68 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHF--VETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEY---------TA-LRDQWI 68 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC--CccCCCchHhhEEEEEEECCEEEEEEEEECCCchhh---------HH-HHHHHH
Confidence 589999999999999999996532 3345555555544455566654 778999995432 11 223578
Q ss_pred hhccEEEEEeccchh----------h-H--H----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 404 MRAHVVALVLDAEEV----------R-A--V----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 404 ~~ad~~llViD~~~~----------~-~--~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
+.+|++|+|+|.++. . . . ..++|+|+|+||+|+.+...... ... .++.+ ..+
T Consensus 69 ~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~--~~~-----~~~~~----~~~ 137 (190)
T cd04144 69 REGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVST--EEG-----AALAR----RLG 137 (190)
T ss_pred HhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCH--HHH-----HHHHH----HhC
Confidence 899999999999875 0 1 1 13689999999999975432111 000 11111 124
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
++++++||++|.|++++|+.+.+.+.
T Consensus 138 ~~~~e~SAk~~~~v~~l~~~l~~~l~ 163 (190)
T cd04144 138 CEFIEASAKTNVNVERAFYTLVRALR 163 (190)
T ss_pred CEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999987654
No 158
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.81 E-value=3.4e-19 Score=167.83 Aligned_cols=144 Identities=17% Similarity=0.167 Sum_probs=96.5
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
.++|+++|.+|||||||+++|........ .|+++.+.. .+...+..+.+|||||..+. . .....++
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~~~--~~t~g~~~~--~~~~~~~~~~l~Dt~G~~~~---------~-~~~~~~~ 74 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSVTT--IPTVGFNVE--TVTYKNVKFNVWDVGGQDKI---------R-PLWRHYY 74 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCccc--cCCcccceE--EEEECCEEEEEEECCCCHHH---------H-HHHHHHh
Confidence 47999999999999999999986543322 333333322 34457789999999996432 1 1234577
Q ss_pred hhccEEEEEeccchh-----------hH----HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 404 MRAHVVALVLDAEEV-----------RA----VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 404 ~~ad~~llViD~~~~-----------~~----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
..||++|+|+|+++. .. ...++|+++|+||+|+.+.... +++.+ .+..........+
T Consensus 75 ~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~----~~i~~----~~~~~~~~~~~~~ 146 (168)
T cd04149 75 TGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKP----HEIQE----KLGLTRIRDRNWY 146 (168)
T ss_pred ccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCH----HHHHH----HcCCCccCCCcEE
Confidence 899999999999985 11 1246899999999998653211 11111 1100000112347
Q ss_pred EEEcccCCCCCHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVID 489 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~ 489 (607)
++++||++|.|++++|++|.+
T Consensus 147 ~~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 147 VQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred EEEeeCCCCCChHHHHHHHhc
Confidence 899999999999999988753
No 159
>PLN03118 Rab family protein; Provisional
Probab=99.81 E-value=1.1e-19 Score=177.73 Aligned_cols=148 Identities=20% Similarity=0.201 Sum_probs=101.5
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..+||+++|.+|||||||+++|++.......+. ++.+.....+.+++ ..+.||||||..++. ....
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t--~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~----------~~~~ 80 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVEDLAPT--IGVDFKIKQLTVGGKRLKLTIWDTAGQERFR----------TLTS 80 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCcCCC--ceeEEEEEEEEECCEEEEEEEEECCCchhhH----------HHHH
Confidence 358999999999999999999998754333333 33333334455554 467899999964431 1234
Q ss_pred HHHhhccEEEEEeccchhh-----------HH-----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCC
Q 007334 401 KNLMRAHVVALVLDAEEVR-----------AV-----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQV 464 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~-----------~~-----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (607)
.+++.+|++|+|+|+++.. .. ..+.|+++|+||+|+........ +.. ..+. ..
T Consensus 81 ~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~--~~~-----~~~~----~~ 149 (211)
T PLN03118 81 SYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSR--EEG-----MALA----KE 149 (211)
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCH--HHH-----HHHH----HH
Confidence 5778999999999998750 01 13578999999999975432211 000 0111 11
Q ss_pred CCCCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 465 TGIPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 465 ~~~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
.+++++++||++|.|++++|+.+...+..
T Consensus 150 ~~~~~~e~SAk~~~~v~~l~~~l~~~~~~ 178 (211)
T PLN03118 150 HGCLFLECSAKTRENVEQCFEELALKIME 178 (211)
T ss_pred cCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 25689999999999999999999877643
No 160
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.81 E-value=3.8e-19 Score=165.00 Aligned_cols=153 Identities=27% Similarity=0.363 Sum_probs=109.3
Q ss_pred EecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHh--h
Q 007334 125 IIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVL--A 202 (607)
Q Consensus 125 ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~--~ 202 (607)
|+|++|||||||+|++++.. ..++..++ +|++.....+.+.+..+.+|||||+........ .......++ .
T Consensus 1 l~G~~~~GKssl~~~~~~~~-~~~~~~~~--~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~----~~~~~~~~~~~~ 73 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR-QKVGNWPG--VTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSE----DEKVARDFLLGE 73 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc-ccccCCCC--cccccceEEEeeCCeEEEEEECCCccccCCCCh----hHHHHHHHhcCC
Confidence 58999999999999999875 34555666 888888888888888999999999974332110 011123334 5
Q ss_pred ccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCChHH
Q 007334 203 KTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTE 282 (607)
Q Consensus 203 ~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi~e 282 (607)
.+|++++|+|++++.. ...+..++.+. ++|+++|+||+|+......... .......++. +++++||.+|.|+++
T Consensus 74 ~~d~vi~v~d~~~~~~--~~~~~~~~~~~--~~~~iiv~NK~Dl~~~~~~~~~-~~~~~~~~~~-~~~~iSa~~~~~~~~ 147 (158)
T cd01879 74 KPDLIVNVVDATNLER--NLYLTLQLLEL--GLPVVVALNMIDEAEKRGIKID-LDKLSELLGV-PVVPTSARKGEGIDE 147 (158)
T ss_pred CCcEEEEEeeCCcchh--HHHHHHHHHHc--CCCEEEEEehhhhcccccchhh-HHHHHHhhCC-CeEEEEccCCCCHHH
Confidence 8999999999987432 22344445444 7899999999999765332221 2223334455 789999999999999
Q ss_pred HHHHhccc
Q 007334 283 LYEALRPS 290 (607)
Q Consensus 283 L~~~i~~~ 290 (607)
+++.+.+.
T Consensus 148 l~~~l~~~ 155 (158)
T cd01879 148 LKDAIAEL 155 (158)
T ss_pred HHHHHHHH
Confidence 99988764
No 161
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.81 E-value=4e-20 Score=167.01 Aligned_cols=151 Identities=23% Similarity=0.273 Sum_probs=110.5
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..+||.++|.+|||||||+|+++..+ +.......+..|.....+.++++ .++||||||+.++. ... .
T Consensus 8 ~lLKViiLGDsGVGKtSLmn~yv~~k-F~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFq---------sLg-~ 76 (210)
T KOG0394|consen 8 TLLKVIILGDSGVGKTSLMNQYVNKK-FSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQ---------SLG-V 76 (210)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHH-HHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhh---------hcc-c
Confidence 46899999999999999999999654 43344555666777777777776 45699999976652 111 2
Q ss_pred HHHhhccEEEEEeccchhhH------------H------hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHH-HHhhC
Q 007334 401 KNLMRAHVVALVLDAEEVRA------------V------EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQE-IQTVI 461 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~~------------~------~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~ 461 (607)
..+++||+|++|+|++.+.. . ....|+||++||+|+...... .++.+ ...+.
T Consensus 77 aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r---------~VS~~~Aq~WC 147 (210)
T KOG0394|consen 77 AFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSR---------QVSEKKAQTWC 147 (210)
T ss_pred ceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccc---------eeeHHHHHHHH
Confidence 46689999999999987610 0 135799999999999764221 12222 23344
Q ss_pred CCCCCCCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 462 PQVTGIPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 462 ~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
....++|++++|||.+.||++.|+.+.+....
T Consensus 148 ~s~gnipyfEtSAK~~~NV~~AFe~ia~~aL~ 179 (210)
T KOG0394|consen 148 KSKGNIPYFETSAKEATNVDEAFEEIARRALA 179 (210)
T ss_pred HhcCCceeEEecccccccHHHHHHHHHHHHHh
Confidence 44567999999999999999999999876543
No 162
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.81 E-value=2.1e-19 Score=169.93 Aligned_cols=145 Identities=18% Similarity=0.185 Sum_probs=100.5
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||++++.+... ...+..|..+.....+.+++. .+.||||||..+.. .....+
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----------~l~~~~ 70 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSF--PDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFT----------AMRDQY 70 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCC--CCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhH----------HHhHHH
Confidence 6899999999999999999997642 223333444444445566664 57799999964331 123456
Q ss_pred HhhccEEEEEeccchh----------h-H----HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV----------R-A----VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~----------~-~----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
++.+|++|+|+|+++. . . ...++|+++|+||+|+.+..... .+....++...++
T Consensus 71 ~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~-----------~~~~~~~a~~~~~ 139 (172)
T cd04141 71 MRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVT-----------TEEGRNLAREFNC 139 (172)
T ss_pred hhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccC-----------HHHHHHHHHHhCC
Confidence 7889999999999876 0 1 11468999999999986543211 1111111122357
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
+++++||++|.||+++|+.+.+.+.
T Consensus 140 ~~~e~Sa~~~~~v~~~f~~l~~~~~ 164 (172)
T cd04141 140 PFFETSAALRHYIDDAFHGLVREIR 164 (172)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999987554
No 163
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.81 E-value=2.3e-19 Score=168.24 Aligned_cols=156 Identities=18% Similarity=0.241 Sum_probs=108.8
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
+|+++|.+|||||||+++++...+ ....+. ++.+.......+++ ..+.+|||||+... ....+..
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~--~~~~~~--t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~ 67 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF--IGEYDP--NLESLYSRQVTIDGEQVSLEILDTAGQQQA---------DTEQLER 67 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc--ccccCC--ChHHhceEEEEECCEEEEEEEEECCCCccc---------ccchHHH
Confidence 489999999999999999987554 223332 33223233333444 46889999999831 1123345
Q ss_pred HhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh---CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH---APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~---~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
++..+|++++|+|++++.+.... .+..++... ..+.|+++|+||+|+...+..............+. +++++||+
T Consensus 68 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sa~ 146 (165)
T cd04146 68 SIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGC-LFFEVSAA 146 (165)
T ss_pred HHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCC-EEEEeCCC
Confidence 67889999999999988666652 345555553 23789999999999876544444444444555665 78999999
Q ss_pred CC-CChHHHHHHhccch
Q 007334 276 TG-LGMTELYEALRPSV 291 (607)
Q Consensus 276 ~g-~gi~eL~~~i~~~l 291 (607)
+| .|++++|+.+.+.+
T Consensus 147 ~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 147 EDYDGVHSVFHELCREV 163 (165)
T ss_pred CCchhHHHHHHHHHHHH
Confidence 99 49999999987644
No 164
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.81 E-value=2.3e-19 Score=168.03 Aligned_cols=144 Identities=20% Similarity=0.290 Sum_probs=101.1
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
++|+++|.+|||||||+++|++.. ......+.++.+.....+..++. .+.+|||||..+. . .....+
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~---------~-~~~~~~ 72 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNE-FNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERY---------R-AITSAY 72 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHH---------H-HHHHHH
Confidence 689999999999999999999764 33344555555655556666664 5779999995432 1 122356
Q ss_pred HhhccEEEEEeccchh----------hH----HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV----------RA----VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 403 i~~ad~~llViD~~~~----------~~----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
++.+|++|+|+|+++. .. ...++|+++|+||+|+....... .+... .+. ...+++
T Consensus 73 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~--~~~~~-----~~~----~~~~~~ 141 (165)
T cd01868 73 YRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVP--TEEAK-----AFA----EKNGLS 141 (165)
T ss_pred HCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCC--HHHHH-----HHH----HHcCCE
Confidence 7889999999999875 00 11258999999999997542211 11111 111 113568
Q ss_pred EEEcccCCCCCHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
++++||++|.|++++|+.+...
T Consensus 142 ~~~~Sa~~~~~v~~l~~~l~~~ 163 (165)
T cd01868 142 FIETSALDGTNVEEAFKQLLTE 163 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 9999999999999999998764
No 165
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.81 E-value=8.3e-19 Score=163.23 Aligned_cols=155 Identities=21% Similarity=0.260 Sum_probs=108.7
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
+|+++|++|||||||+|+|++...... ..+. ++.+.....+...+ ..+.+|||||.. .+......
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~D~~g~~----------~~~~~~~~ 68 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEK-HEST--TQASFFQKTVNIGGKRIDLAIWDTAGQE----------RYHALGPI 68 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCC-cCCc--cceeEEEEEEEECCEEEEEEEEECCchH----------HHHHhhHH
Confidence 799999999999999999998765321 1121 33444444444434 468999999976 44455566
Q ss_pred HhhccCEEEEEEecCCCCCHhHHH-HHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETG 277 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g 277 (607)
++..+|++++|+|++++.+.++.. +...+... ..++|+++|+||+|+..................+. ..+++||++|
T Consensus 69 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~ 147 (162)
T cd04123 69 YYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGA-KHFETSAKTG 147 (162)
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCC-EEEEEeCCCC
Confidence 788999999999998876655422 22333333 23689999999999986544333333334444555 6799999999
Q ss_pred CChHHHHHHhccc
Q 007334 278 LGMTELYEALRPS 290 (607)
Q Consensus 278 ~gi~eL~~~i~~~ 290 (607)
.|+++++++|.+.
T Consensus 148 ~gi~~~~~~l~~~ 160 (162)
T cd04123 148 KGIEELFLSLAKR 160 (162)
T ss_pred CCHHHHHHHHHHH
Confidence 9999999998754
No 166
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.81 E-value=1.1e-19 Score=159.91 Aligned_cols=156 Identities=22% Similarity=0.260 Sum_probs=126.5
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
.++|.|||.+|||||||+-+++...+. +....+...|+....+.++| .++.||||+|++ +|...|
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~fd---~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqE----------rFRtLT 77 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNTFD---DLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQE----------RFRTLT 77 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcccC---ccCCceeeeeEEEEEEEEcCceEEEEEEeccchH----------hhhccC
Confidence 479999999999999999999987542 22222245666666666655 578999999999 888999
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhh-----CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEe
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH-----APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAI 272 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~-----~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~i 272 (607)
..|++.|.++|+|+|++...+.... -.|+++. .+++-.++|+||+|...++.+..++....+..++. -++++
T Consensus 78 pSyyRgaqGiIlVYDVT~Rdtf~kL--d~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~-LFiE~ 154 (209)
T KOG0080|consen 78 PSYYRGAQGIILVYDVTSRDTFVKL--DIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRC-LFIEC 154 (209)
T ss_pred HhHhccCceeEEEEEccchhhHHhH--HHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCc-EEEEc
Confidence 9999999999999999988887764 3466554 44666789999999888788888888888888776 77999
Q ss_pred ecCCCCChHHHHHHhccch
Q 007334 273 SAETGLGMTELYEALRPSV 291 (607)
Q Consensus 273 SA~~g~gi~eL~~~i~~~l 291 (607)
||++.+|++..|+.+.+.+
T Consensus 155 SAkt~~~V~~~FeelveKI 173 (209)
T KOG0080|consen 155 SAKTRENVQCCFEELVEKI 173 (209)
T ss_pred chhhhccHHHHHHHHHHHH
Confidence 9999999999998887655
No 167
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.81 E-value=2.8e-19 Score=167.87 Aligned_cols=144 Identities=21% Similarity=0.233 Sum_probs=98.5
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCce-eeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLT-RDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT-~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
+||+++|.+|||||||++++++.. . ...++.|+ .+.....+..++. .+.||||||..+. . .....
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~-~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~---------~-~~~~~ 70 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKK-F-MADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERF---------R-AVTRS 70 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC-C-CCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHH---------H-HHHHH
Confidence 689999999999999999999763 2 23344333 2333334455554 5679999995432 1 12345
Q ss_pred HHhhccEEEEEeccchhh-----------H---HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEVR-----------A---VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~~-----------~---~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
+++++|++|+|+|+++.. . ...+.|+++|+||+|+.+..... .+.. .++. ...+.
T Consensus 71 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~--~~~~-----~~~~----~~~~~ 139 (166)
T cd04122 71 YYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVT--YEEA-----KQFA----DENGL 139 (166)
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcC--HHHH-----HHHH----HHcCC
Confidence 778999999999999761 1 12467999999999997653211 0111 1111 12356
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+++++||++|.|++++|..+...+
T Consensus 140 ~~~e~Sa~~~~~i~e~f~~l~~~~ 163 (166)
T cd04122 140 LFLECSAKTGENVEDAFLETAKKI 163 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 899999999999999999887654
No 168
>PRK11058 GTPase HflX; Provisional
Probab=99.81 E-value=2.1e-19 Score=191.85 Aligned_cols=149 Identities=22% Similarity=0.319 Sum_probs=111.2
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe-EEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR-TVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~-~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
.+|+++|.||||||||+|+|++.+. .+.+.+|+|+|+....+.+.+. .+.||||||+.+..+....+. ...+...+
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~-~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~--f~~tl~~~ 274 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARV-YAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAA--FKATLQET 274 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCce-eeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHH--HHHHHHHh
Confidence 5899999999999999999998764 4889999999999888887665 899999999854321111122 34466778
Q ss_pred hhccEEEEEeccchhh---H-------H----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC-
Q 007334 404 MRAHVVALVLDAEEVR---A-------V----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP- 468 (607)
Q Consensus 404 ~~ad~~llViD~~~~~---~-------~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 468 (607)
..||++|+|+|++++. . . ..++|+++|+||+|+.+... . .+ .. .. .+.+
T Consensus 275 ~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~--~---~~----~~--~~-----~~~~~ 338 (426)
T PRK11058 275 RQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE--P---RI----DR--DE-----ENKPI 338 (426)
T ss_pred hcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh--H---HH----HH--Hh-----cCCCc
Confidence 8999999999998751 0 1 13689999999999975311 0 00 00 00 1234
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
++++||++|.|++++++.+.+.+.
T Consensus 339 ~v~ISAktG~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 339 RVWLSAQTGAGIPLLFQALTERLS 362 (426)
T ss_pred eEEEeCCCCCCHHHHHHHHHHHhh
Confidence 589999999999999999988764
No 169
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.81 E-value=5.3e-19 Score=168.53 Aligned_cols=152 Identities=18% Similarity=0.228 Sum_probs=106.9
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
..+|+++|.+|||||||++++...... ...|. +. .....+...+..+.+|||||+. ++...+..
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~--~~~pt--~g--~~~~~~~~~~~~~~i~D~~Gq~----------~~~~~~~~ 80 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLGEIV--TTIPT--IG--FNVETVEYKNISFTVWDVGGQD----------KIRPLWRH 80 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCc--cccCC--cc--eeEEEEEECCEEEEEEECCCCH----------HHHHHHHH
Confidence 468999999999999999999865542 22221 22 2233456678899999999987 56667778
Q ss_pred HhhccCEEEEEEecCCCCCHhHH--HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCC-------Cc
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFG-------DP 269 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~-------~~ 269 (607)
++..+|++|+|+|+++..+..+. ++.+++.+. .++.|+++|+||+|+..... .++. ...+++. .+
T Consensus 81 ~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~--~~~~---~~~l~l~~~~~~~~~~ 155 (181)
T PLN00223 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEI---TDKLGLHSLRQRHWYI 155 (181)
T ss_pred HhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCC--HHHH---HHHhCccccCCCceEE
Confidence 89999999999999986554431 222333221 24789999999999875422 1221 1223332 23
Q ss_pred EEeecCCCCChHHHHHHhccchH
Q 007334 270 IAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 270 i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
+++||++|+|+++++++|.+.+.
T Consensus 156 ~~~Sa~~g~gv~e~~~~l~~~~~ 178 (181)
T PLN00223 156 QSTCATSGEGLYEGLDWLSNNIA 178 (181)
T ss_pred EeccCCCCCCHHHHHHHHHHHHh
Confidence 57999999999999999976654
No 170
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.81 E-value=2.8e-19 Score=175.34 Aligned_cols=147 Identities=22% Similarity=0.243 Sum_probs=102.4
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC---eEEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG---RTVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~---~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
+||+++|.+|||||||+++|++.. +.....+.++.|.....+.+++ ..+.||||||...+. .....
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~-~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~----------~l~~~ 69 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEG-FGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGG----------KMLDK 69 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCC-CCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHH----------HHHHH
Confidence 489999999999999999999764 3334455566677666666643 477899999953221 12235
Q ss_pred HHhhccEEEEEeccchhh-----------H--H----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCC
Q 007334 402 NLMRAHVVALVLDAEEVR-----------A--V----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQV 464 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~~-----------~--~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (607)
+++.||++|+|+|+++.. . . ..+.|+++|+||+|+.+...... +.. ..+. ..
T Consensus 70 ~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~--~~~-----~~~~----~~ 138 (215)
T cd04109 70 YIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKD--DKH-----ARFA----QA 138 (215)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCH--HHH-----HHHH----HH
Confidence 678999999999999750 0 1 12357999999999975422110 110 1111 12
Q ss_pred CCCCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 465 TGIPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 465 ~~~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
.+.+++++||++|.|++++|+.+.+.+..
T Consensus 139 ~~~~~~~iSAktg~gv~~lf~~l~~~l~~ 167 (215)
T cd04109 139 NGMESCLVSAKTGDRVNLLFQQLAAELLG 167 (215)
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 35689999999999999999999886553
No 171
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.81 E-value=3.4e-19 Score=171.64 Aligned_cols=153 Identities=22% Similarity=0.304 Sum_probs=106.1
Q ss_pred ceEEEEcCCCCchhHHHHHhhcC------CceeecCCCCceeeeEEEEEEEc--------------CeEEEEEecCCCcc
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQE------DRVLVGPEAGLTRDSVRVHFEYQ--------------GRTVYLVDTAGWLQ 384 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~------~~~~~~~~~gtT~~~~~~~~~~~--------------~~~~~liDTpG~~~ 384 (607)
++|+++|++|+|||||+++|++. +....+..+|+|.+.....+.+. +..+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 47999999999999999999963 22234456688888776666654 67899999999632
Q ss_pred cccccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcH
Q 007334 385 REKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVP 454 (607)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~ 454 (607)
. ......++..+|++++|+|++++ .....++|+++|+||+|+..........+.+.
T Consensus 81 ~----------~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~---- 146 (192)
T cd01889 81 L----------IRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEKMK---- 146 (192)
T ss_pred H----------HHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHH----
Confidence 1 12233556679999999999874 11124789999999999975432222222222
Q ss_pred HHHHhhCC--CCCCCCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 455 QEIQTVIP--QVTGIPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 455 ~~~~~~~~--~~~~~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+.+...+. ...+.+++++||++|.|+++|++.+...+
T Consensus 147 ~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~ 185 (192)
T cd01889 147 KKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLI 185 (192)
T ss_pred HHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcc
Confidence 22222211 12367999999999999999998887643
No 172
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.81 E-value=7.3e-19 Score=167.69 Aligned_cols=157 Identities=13% Similarity=0.160 Sum_probs=107.1
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
+|+++|.+|||||||++++++..+.. +... ++..+.....+..++ ..+.+|||+|.. ++......
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f~~--~~~~-T~g~~~~~~~i~~~~~~~~l~iwDt~G~~----------~~~~~~~~ 68 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEFDE--DYIQ-TLGVNFMEKTISIRGTEITFSIWDLGGQR----------EFINMLPL 68 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC--CCCC-ccceEEEEEEEEECCEEEEEEEEeCCCch----------hHHHhhHH
Confidence 79999999999999999999876522 1111 133344334455555 578999999997 45555667
Q ss_pred HhhccCEEEEEEecCCCCCHhHH-HHHHHHHhhCCCCcEEEEecCCCcccCCc-----CcHHHHHHHHHhcCCCCcEEee
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKHAPQIKPIVAMNKCESLHNGT-----GSLAGAAAESLMLGFGDPIAIS 273 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~~~~~p~ilV~NK~D~~~~~~-----~~~~~~~~~~~~~~~~~~i~iS 273 (607)
++.+||++++|+|++++.+..+. ++...+.+..+..+.|+|+||+|+..... .........+...+. +++++|
T Consensus 69 ~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~pilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~-~~~e~S 147 (182)
T cd04128 69 VCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIPILVGTKYDLFADLPPEEQEEITKQARKYAKAMKA-PLIFCS 147 (182)
T ss_pred HCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhhhHHHHHHHHHHcCC-EEEEEe
Confidence 88999999999999987776652 23333333322333478999999863211 111222233344554 789999
Q ss_pred cCCCCChHHHHHHhccchH
Q 007334 274 AETGLGMTELYEALRPSVE 292 (607)
Q Consensus 274 A~~g~gi~eL~~~i~~~l~ 292 (607)
|++|.|++++++.+.+.+.
T Consensus 148 Ak~g~~v~~lf~~l~~~l~ 166 (182)
T cd04128 148 TSHSINVQKIFKIVLAKAF 166 (182)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999987664
No 173
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.81 E-value=2.2e-19 Score=170.25 Aligned_cols=154 Identities=18% Similarity=0.178 Sum_probs=101.4
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||+++++... + ..++..|..+.....+.+++. .+.||||||..+.. .. ...+
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~-f-~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------~~-~~~~ 69 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNK-F-PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYD---------RL-RPLS 69 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC-C-CCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchh---------hh-hhhh
Confidence 589999999999999999999753 2 344545554544445566664 56799999964431 11 1236
Q ss_pred HhhccEEEEEeccchhh--------H------HhcCCcEEEEEeCccCCCCcCchHHHHHH-HHhcHHHHHhhCCCCC-C
Q 007334 403 LMRAHVVALVLDAEEVR--------A------VEEGRGLVVIVNKMDLLSGRQNSALYKRV-KEAVPQEIQTVIPQVT-G 466 (607)
Q Consensus 403 i~~ad~~llViD~~~~~--------~------~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~ 466 (607)
++.+|++|+|+|+++.. . ...+.|+|+|+||+|+.+.....+..... .+.+..+..+.++... .
T Consensus 70 ~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~ 149 (175)
T cd01874 70 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKA 149 (175)
T ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCC
Confidence 77899999999998750 0 12368999999999986542211111100 0112222222222222 3
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
.+++++||++|.|++++|+.++..
T Consensus 150 ~~~~e~SA~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 150 VKYVECSALTQKGLKNVFDEAILA 173 (175)
T ss_pred cEEEEecCCCCCCHHHHHHHHHHH
Confidence 689999999999999999988763
No 174
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.81 E-value=3.9e-19 Score=162.29 Aligned_cols=140 Identities=16% Similarity=0.109 Sum_probs=97.2
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHh
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVL 201 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 201 (607)
+|+++|++|||||||+|+|++.... .. .|.. +.+.+ .+|||||+... ...++......+
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~----~~---~t~~-----~~~~~---~~iDt~G~~~~------~~~~~~~~~~~~ 60 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL----YK---KTQA-----VEYND---GAIDTPGEYVE------NRRLYSALIVTA 60 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc----cc---ccee-----EEEcC---eeecCchhhhh------hHHHHHHHHHHh
Confidence 6999999999999999999987542 11 1211 12222 68999998411 113344444568
Q ss_pred hccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCChH
Q 007334 202 AKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMT 281 (607)
Q Consensus 202 ~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi~ 281 (607)
+++|++++|+|++++.+..+..+ +... ..|+++|+||+|+.+.. ...+.....+...+..+++++||++|.|++
T Consensus 61 ~~ad~vilv~d~~~~~s~~~~~~---~~~~--~~p~ilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 134 (142)
T TIGR02528 61 ADADVIALVQSATDPESRFPPGF---ASIF--VKPVIGLVTKIDLAEAD-VDIERAKELLETAGAEPIFEISSVDEQGLE 134 (142)
T ss_pred hcCCEEEEEecCCCCCcCCChhH---HHhc--cCCeEEEEEeeccCCcc-cCHHHHHHHHHHcCCCcEEEEecCCCCCHH
Confidence 99999999999999887765433 3222 35999999999987532 222333333444555578999999999999
Q ss_pred HHHHHhc
Q 007334 282 ELYEALR 288 (607)
Q Consensus 282 eL~~~i~ 288 (607)
++++.|.
T Consensus 135 ~l~~~l~ 141 (142)
T TIGR02528 135 ALVDYLN 141 (142)
T ss_pred HHHHHHh
Confidence 9999874
No 175
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.81 E-value=2.6e-19 Score=170.29 Aligned_cols=146 Identities=22% Similarity=0.207 Sum_probs=99.6
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEc------------CeEEEEEecCCCcccccccCc
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQ------------GRTVYLVDTAGWLQREKEKGP 391 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~------------~~~~~liDTpG~~~~~~~~~~ 391 (607)
.+||+++|.+|||||||++++++.. ......+.++.+.....+.+. ...+.||||||..+.
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~------ 76 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNK-FNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERF------ 76 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC-CCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHH------
Confidence 4799999999999999999999763 333334444444444444433 256789999995332
Q ss_pred chhHHHHHHHHHhhccEEEEEeccchhh-----------HH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHH
Q 007334 392 ASLSVMQSRKNLMRAHVVALVLDAEEVR-----------AV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQE 456 (607)
Q Consensus 392 ~~~~~~~~~~~i~~ad~~llViD~~~~~-----------~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 456 (607)
. .....+++.+|++++|+|+++.. .. ..+.|+++|+||+|+.+...... +.. .+
T Consensus 77 ---~-~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~--~~~-----~~ 145 (180)
T cd04127 77 ---R-SLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSE--EQA-----KA 145 (180)
T ss_pred ---H-HHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCH--HHH-----HH
Confidence 1 22345778999999999998761 11 13679999999999976432111 111 11
Q ss_pred HHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 457 IQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 457 ~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+.+ ..+++++++||++|.|++++|+.+.+.+
T Consensus 146 ~~~----~~~~~~~e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 146 LAD----KYGIPYFETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred HHH----HcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 111 1256899999999999999999998754
No 176
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.81 E-value=7e-19 Score=164.03 Aligned_cols=154 Identities=21% Similarity=0.193 Sum_probs=106.8
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC--CeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG--DLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
+|+++|.+|||||||+|+|++...... ..+. .+.+.....+.+. ...+.+|||||+. .+......
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~~~~~~ 68 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPD-LAAT--IGVDFKVKTLTVDGKKVKLAIWDTAGQE----------RFRTLTSS 68 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcc-cCCc--ccceEEEEEEEECCEEEEEEEEECCCch----------hhhhhhHH
Confidence 799999999999999999998765321 1221 2222222223333 3578999999987 44455566
Q ss_pred HhhccCEEEEEEecCCCCCHhHHH-HHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAET 276 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~ 276 (607)
+++.+|++++|+|++++.+..+.. +...+.+. ..+.|+++|+||+|+.... ...+.........++ +++++||++
T Consensus 69 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~-~~~~~~~~~~~~~~~-~~~~~Sa~~ 146 (161)
T cd01863 69 YYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENRE-VTREEGLKFARKHNM-LFIETSAKT 146 (161)
T ss_pred HhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccc-cCHHHHHHHHHHcCC-EEEEEecCC
Confidence 788999999999998876665422 33333333 2478999999999997432 223333334444555 689999999
Q ss_pred CCChHHHHHHhccc
Q 007334 277 GLGMTELYEALRPS 290 (607)
Q Consensus 277 g~gi~eL~~~i~~~ 290 (607)
|.|++++++.+.+.
T Consensus 147 ~~gi~~~~~~~~~~ 160 (161)
T cd01863 147 RDGVQQAFEELVEK 160 (161)
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999988653
No 177
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.81 E-value=5.7e-19 Score=167.03 Aligned_cols=153 Identities=17% Similarity=0.167 Sum_probs=110.0
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
+|+++|.+|||||||++++.+..+ ...... ++.+.....+..++ ..+.+|||||+. ++......
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~~--~~~~~~--t~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~ 67 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGY--PTEYVP--TAFDNFSVVVLVDGKPVRLQLCDTAGQD----------EFDKLRPL 67 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--CCCCCC--ceeeeeeEEEEECCEEEEEEEEECCCCh----------hhcccccc
Confidence 699999999999999999987654 233333 44555444445554 578899999997 33334455
Q ss_pred HhhccCEEEEEEecCCCCCHhHH--HHHHHHHhhCCCCcEEEEecCCCcccC------------CcCcHHHHHHHHHhcC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHN------------GTGSLAGAAAESLMLG 265 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~D~~~~------------~~~~~~~~~~~~~~~~ 265 (607)
++..+|++++|+|++++.+.... .+...++...++.|+++|+||+|+... +....++........+
T Consensus 68 ~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~ 147 (173)
T cd04130 68 CYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIG 147 (173)
T ss_pred ccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhC
Confidence 78899999999999988776653 244444444457899999999998642 1223333444455566
Q ss_pred CCCcEEeecCCCCChHHHHHHhc
Q 007334 266 FGDPIAISAETGLGMTELYEALR 288 (607)
Q Consensus 266 ~~~~i~iSA~~g~gi~eL~~~i~ 288 (607)
..+++++||++|.|++++++.+.
T Consensus 148 ~~~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 148 ACEYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHH
Confidence 66789999999999999998764
No 178
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.81 E-value=1e-18 Score=168.40 Aligned_cols=159 Identities=17% Similarity=0.199 Sum_probs=108.1
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
+|+++|.+|||||||+++|++.++.. ..... ++..+.....+..++ ..+.+|||||.. ++......
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~-~~~~~-t~~~~~~~~~~~~~~~~~~l~i~D~~G~~----------~~~~~~~~ 69 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLV-GPYQN-TIGAAFVAKRMVVGERVVTLGIWDTAGSE----------RYEAMSRI 69 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCC-cCccc-ceeeEEEEEEEEECCEEEEEEEEECCCch----------hhhhhhHh
Confidence 79999999999999999999876531 11221 122222233444454 457799999987 33344456
Q ss_pred HhhccCEEEEEEecCCCCCHhH-HHHHHHHHhhCCCCcEEEEecCCCcccCC----cCcHHHHHHHHHhcCCCCcEEeec
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLD-LEVGKWLRKHAPQIKPIVAMNKCESLHNG----TGSLAGAAAESLMLGFGDPIAISA 274 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~-~~~~~~l~~~~~~~p~ilV~NK~D~~~~~----~~~~~~~~~~~~~~~~~~~i~iSA 274 (607)
++..+|++++|+|+++..+..+ ..+.+.++...++.|+++|+||+|+.... .....+........+. +++++||
T Consensus 70 ~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa 148 (193)
T cd04118 70 YYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKA-QHFETSS 148 (193)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCC-eEEEEeC
Confidence 7789999999999988765544 22444444444578999999999986432 1122222233344454 6799999
Q ss_pred CCCCChHHHHHHhccchHH
Q 007334 275 ETGLGMTELYEALRPSVED 293 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~~l~~ 293 (607)
++|.|+++|++.|.+.+-.
T Consensus 149 ~~~~gv~~l~~~i~~~~~~ 167 (193)
T cd04118 149 KTGQNVDELFQKVAEDFVS 167 (193)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999876643
No 179
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.81 E-value=4.6e-19 Score=165.29 Aligned_cols=149 Identities=22% Similarity=0.257 Sum_probs=100.3
Q ss_pred EEEEecCCCCchhHHHHHhhccce--eeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRRE--ALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~--~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
+|+++|.+|||||||+++|++... .......+ .........+..+.+|||||.. ++...+..
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g------~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~~~ 64 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVG------FNVESFEKGNLSFTAFDMSGQG----------KYRGLWEH 64 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccc------cceEEEEECCEEEEEEECCCCH----------hhHHHHHH
Confidence 489999999999999999998642 11221222 2222334577899999999987 45556667
Q ss_pred HhhccCEEEEEEecCCCCCHhHH--HHHHHHHhh---CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcC----C-CCc
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKH---APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLG----F-GDP 269 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~---~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~----~-~~~ 269 (607)
++..+|++++|+|++++.+.... ++..+++.. ..+.|+++|+||+|+..... ... ........ . ..+
T Consensus 65 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~--~~~-~~~~l~~~~~~~~~~~~ 141 (162)
T cd04157 65 YYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALT--AVK-ITQLLGLENIKDKPWHI 141 (162)
T ss_pred HHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCC--HHH-HHHHhCCccccCceEEE
Confidence 88999999999999987654331 122222211 13789999999999875421 111 11111111 1 136
Q ss_pred EEeecCCCCChHHHHHHhcc
Q 007334 270 IAISAETGLGMTELYEALRP 289 (607)
Q Consensus 270 i~iSA~~g~gi~eL~~~i~~ 289 (607)
+++||++|.|+++++++|.+
T Consensus 142 ~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 142 FASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred EEeeCCCCCchHHHHHHHhc
Confidence 89999999999999999864
No 180
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.81 E-value=1.2e-18 Score=164.15 Aligned_cols=157 Identities=18% Similarity=0.143 Sum_probs=109.6
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+++|.+|||||||++++++...... ..+. .+.+.....+..++ ..+.+|||||+. ++....
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~l~i~D~~G~~----------~~~~~~ 71 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYVTNKFDTQ-LFHT--IGVEFLNKDLEVDGHFVTLQIWDTAGQE----------RFRSLR 71 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCcC-cCCc--eeeEEEEEEEEECCeEEEEEEEeCCChH----------HHHHhH
Confidence 46899999999999999999997664221 1121 33343333444444 467899999987 555667
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHHH-HHHHHHhh-----CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEE
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKH-----APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIA 271 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~-----~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (607)
..+++.+|++++|+|++++.+..... +...+... ..+.|+++|+||+|+.. ......+.......++..++++
T Consensus 72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e 150 (170)
T cd04116 72 TPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPE-RQVSTEEAQAWCRENGDYPYFE 150 (170)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccc-cccCHHHHHHHHHHCCCCeEEE
Confidence 77899999999999999876555422 22222221 13679999999999874 2333344444455666557899
Q ss_pred eecCCCCChHHHHHHhccc
Q 007334 272 ISAETGLGMTELYEALRPS 290 (607)
Q Consensus 272 iSA~~g~gi~eL~~~i~~~ 290 (607)
+||++|.|+.++++.+.+.
T Consensus 151 ~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 151 TSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred EECCCCCCHHHHHHHHHhh
Confidence 9999999999999988753
No 181
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.81 E-value=3.2e-19 Score=168.10 Aligned_cols=153 Identities=17% Similarity=0.181 Sum_probs=105.0
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHh
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVL 201 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 201 (607)
+|+++|.+|||||||+++|++... .. +. .|.......+...+..+.+|||||+. ++...+..++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~--~~--~~--~T~~~~~~~~~~~~~~i~l~Dt~G~~----------~~~~~~~~~~ 64 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF--MQ--PI--PTIGFNVETVEYKNLKFTIWDVGGKH----------KLRPLWKHYY 64 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC--CC--cC--CcCceeEEEEEECCEEEEEEECCCCh----------hcchHHHHHh
Confidence 489999999999999999998643 22 22 33333344566778899999999987 4445566788
Q ss_pred hccCEEEEEEecCCCCCHhHH--HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcC--C---CCcEEee
Q 007334 202 AKTQFAIFMIDVRSGLHPLDL--EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLG--F---GDPIAIS 273 (607)
Q Consensus 202 ~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~--~---~~~i~iS 273 (607)
..+|++++|+|++++.+..+. ++...++.. ..+.|+++|+||+|+... ...++....+...+ . ..++++|
T Consensus 65 ~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~S 142 (169)
T cd04158 65 LNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGA--LSVEEMTELLSLHKLCCGRSWYIQGCD 142 (169)
T ss_pred ccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccC--CCHHHHHHHhCCccccCCCcEEEEeCc
Confidence 999999999999986544431 222233221 235799999999998643 22222222221111 1 1457899
Q ss_pred cCCCCChHHHHHHhccchH
Q 007334 274 AETGLGMTELYEALRPSVE 292 (607)
Q Consensus 274 A~~g~gi~eL~~~i~~~l~ 292 (607)
|++|.|+++++++|.+.+.
T Consensus 143 a~~g~gv~~~f~~l~~~~~ 161 (169)
T cd04158 143 ARSGMGLYEGLDWLSRQLV 161 (169)
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 9999999999999976554
No 182
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.80 E-value=3e-19 Score=171.41 Aligned_cols=159 Identities=26% Similarity=0.310 Sum_probs=120.2
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeee-----------------ccCCCCceeeeeEEEEee--eCCeeEEEecCCCC
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALV-----------------YNTPDDHVTRDIREGLAK--LGDLRFKVLDSAGL 180 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v-----------------~~~~~~~~T~~~~~~~~~--~~~~~~~liDTpG~ 180 (607)
..+|+++|..++|||||+++|++...... ....+ .|.+....... ..+..+.++||||+
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~--~ti~~~~~~~~~~~~~~~i~~iDtPG~ 80 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERG--ITIDLSFISFEKNENNRKITLIDTPGH 80 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCT--SSSSSEEEEEEBTESSEEEEEEEESSS
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcc--cccccccccccccccccceeecccccc
Confidence 46899999999999999999996542110 01123 56666666666 78999999999999
Q ss_pred ccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHH-H-
Q 007334 181 ETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGA-A- 258 (607)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~-~- 258 (607)
. ++...+...+..+|++|+|+|+.++......+.+..+... +.|+|+|+||+|+...+....... .
T Consensus 81 ~----------~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~--~~p~ivvlNK~D~~~~~~~~~~~~~~~ 148 (188)
T PF00009_consen 81 E----------DFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILREL--GIPIIVVLNKMDLIEKELEEIIEEIKE 148 (188)
T ss_dssp H----------HHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHT--T-SEEEEEETCTSSHHHHHHHHHHHHH
T ss_pred c----------ceeecccceecccccceeeeeccccccccccccccccccc--ccceEEeeeeccchhhhHHHHHHHHHH
Confidence 7 6777788889999999999999999999988888888887 789999999999984321111111 1
Q ss_pred HHHHhcCCC-----CcEEeecCCCCChHHHHHHhccchH
Q 007334 259 AESLMLGFG-----DPIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 259 ~~~~~~~~~-----~~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
......++. +++++||.+|.|+++|++.|.+.+|
T Consensus 149 ~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 149 KLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred HhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 112233333 5899999999999999999988765
No 183
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.80 E-value=4.7e-19 Score=167.48 Aligned_cols=155 Identities=14% Similarity=0.124 Sum_probs=109.7
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
+|+++|.+|||||||++++++.... ..... +..+.....+.+++ ..+.+|||||... +......
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~ 67 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFP--EEYVP--TVFDHYAVSVTVGGKQYLLGLYDTAGQED----------YDRLRPL 67 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC--CCCCC--ceeeeeEEEEEECCEEEEEEEEeCCCccc----------ccccccc
Confidence 7999999999999999999987642 22221 33333333444444 3578999999872 2223345
Q ss_pred HhhccCEEEEEEecCCCCCHhHH--HHHHHHHhhCCCCcEEEEecCCCcccCC------------cCcHHHHHHHHHhcC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHNG------------TGSLAGAAAESLMLG 265 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~D~~~~~------------~~~~~~~~~~~~~~~ 265 (607)
++..+|++++|+|++++.+.++. .+...++...++.|+++|+||+|+.... ....+.........+
T Consensus 68 ~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 147 (174)
T cd04135 68 SYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIG 147 (174)
T ss_pred cCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcC
Confidence 67899999999999987776653 2455555545689999999999986532 122233344455666
Q ss_pred CCCcEEeecCCCCChHHHHHHhccc
Q 007334 266 FGDPIAISAETGLGMTELYEALRPS 290 (607)
Q Consensus 266 ~~~~i~iSA~~g~gi~eL~~~i~~~ 290 (607)
..+++++||++|.|++++++.+...
T Consensus 148 ~~~~~e~Sa~~~~gi~~~f~~~~~~ 172 (174)
T cd04135 148 AHCYVECSALTQKGLKTVFDEAILA 172 (174)
T ss_pred CCEEEEecCCcCCCHHHHHHHHHHH
Confidence 6578999999999999999988754
No 184
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.80 E-value=6.6e-19 Score=168.38 Aligned_cols=157 Identities=24% Similarity=0.272 Sum_probs=115.7
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeec---------------cCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCc
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVY---------------NTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATS 186 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~---------------~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~ 186 (607)
+|+++|.+|+|||||+|+|++....... ...+ +|.+.......+.+..+.+|||||+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~liDtpG~~----- 73 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERG--ITIKSGVATFEWPDRRVNFIDTPGHE----- 73 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcC--CCeecceEEEeeCCEEEEEEeCCCcH-----
Confidence 4899999999999999999987543211 1122 55566666667778899999999987
Q ss_pred hhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCc--HHHHHHHHHhc
Q 007334 187 GSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGS--LAGAAAESLML 264 (607)
Q Consensus 187 ~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~--~~~~~~~~~~~ 264 (607)
.+...+..++..+|++++|+|++++......++...+... ++|+++|+||+|+....... .......+...
T Consensus 74 -----~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~--~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~ 146 (189)
T cd00881 74 -----DFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREG--GLPIIVAINKIDRVGEEDLEEVLREIKELLGLI 146 (189)
T ss_pred -----HHHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHC--CCCeEEEEECCCCcchhcHHHHHHHHHHHHccc
Confidence 4555667788899999999999998877776666666653 78999999999998632211 11112222222
Q ss_pred C-------------CCCcEEeecCCCCChHHHHHHhccchH
Q 007334 265 G-------------FGDPIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 265 ~-------------~~~~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
+ ..+++++||++|.|++++++.|...++
T Consensus 147 ~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 147 GFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred cccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 1 246799999999999999999987764
No 185
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.80 E-value=2.6e-19 Score=161.77 Aligned_cols=163 Identities=19% Similarity=0.233 Sum_probs=124.1
Q ss_pred ccCCCEEEEecCCCCchhHHHHHhhccceeeec--cCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHH
Q 007334 117 INLLPTVMIIGRPNVGKSALFNRLIRRREALVY--NTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTA 194 (607)
Q Consensus 117 ~~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~--~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~ 194 (607)
+..+.+|.|+|.+|||||||+|+++..++..-. ....++.|++.... -.-..++||||+|++ +|.
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd---~~~vtlQiWDTAGQE----------RFq 72 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVD---DRSVTLQIWDTAGQE----------RFQ 72 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEc---CeEEEEEEEecccHH----------Hhh
Confidence 344689999999999999999999987753221 12234466665442 123578999999999 777
Q ss_pred HHHHHHhhccCEEEEEEecCCCCCHhHHH-H-HHHHHhhC----CCCcEEEEecCCCcccC--CcCcHHHHHHHHHhcCC
Q 007334 195 GMTANVLAKTQFAIFMIDVRSGLHPLDLE-V-GKWLRKHA----PQIKPIVAMNKCESLHN--GTGSLAGAAAESLMLGF 266 (607)
Q Consensus 195 ~~~~~~~~~ad~vl~VvD~s~~~~~~~~~-~-~~~l~~~~----~~~p~ilV~NK~D~~~~--~~~~~~~~~~~~~~~~~ 266 (607)
+.-...++.||++++|+|+..+-+.+..+ + -++|.... ..-|+|+++||+|+... +.++......++...|-
T Consensus 73 sLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gn 152 (210)
T KOG0394|consen 73 SLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGN 152 (210)
T ss_pred hcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCC
Confidence 77778899999999999999887777633 2 24444432 24689999999999763 45677777888888887
Q ss_pred CCcEEeecCCCCChHHHHHHhccchH
Q 007334 267 GDPIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 267 ~~~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
-+.|++||+.+.|+++.|+.+....-
T Consensus 153 ipyfEtSAK~~~NV~~AFe~ia~~aL 178 (210)
T KOG0394|consen 153 IPYFETSAKEATNVDEAFEEIARRAL 178 (210)
T ss_pred ceeEEecccccccHHHHHHHHHHHHH
Confidence 78999999999999999999876543
No 186
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.80 E-value=9.5e-19 Score=161.61 Aligned_cols=154 Identities=22% Similarity=0.239 Sum_probs=108.3
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee--CCeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL--GDLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.+|||||||+|+|++...... ..+. ++.+.....+.. ....+.+|||||+. .+.....
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~-~~~t--~~~~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~~~~~ 67 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDEN-YKST--IGVDFKSKTIEIDGKTVKLQIWDTAGQE----------RFRSITP 67 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCc-cCCc--eeeeeEEEEEEECCEEEEEEEEecCChH----------HHHHHHH
Confidence 3799999999999999999998765332 1222 333333333333 34689999999986 4555667
Q ss_pred HHhhccCEEEEEEecCCCCCHhH-HHHHHHHHhhC-CCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLD-LEVGKWLRKHA-PQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAET 276 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~-~~~~~~l~~~~-~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~ 276 (607)
.+++++|++++|+|++++.+... ..+...+.... .+.|+++|+||+|+........+.........+. +++++||++
T Consensus 68 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~ 146 (159)
T cd00154 68 SYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGL-LFFETSAKT 146 (159)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCC-eEEEEecCC
Confidence 78899999999999988544433 22333343332 4689999999999974333333444444444454 789999999
Q ss_pred CCChHHHHHHhc
Q 007334 277 GLGMTELYEALR 288 (607)
Q Consensus 277 g~gi~eL~~~i~ 288 (607)
|.|++++++.|.
T Consensus 147 ~~~i~~~~~~i~ 158 (159)
T cd00154 147 GENVEELFQSLA 158 (159)
T ss_pred CCCHHHHHHHHh
Confidence 999999999875
No 187
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.80 E-value=1.6e-18 Score=162.98 Aligned_cols=157 Identities=19% Similarity=0.163 Sum_probs=109.8
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
.++|+++|.+|||||||++++++.... ...+.+.+.+.....+.+.+ ..+.+|||||+. .+...+
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~----------~~~~~~ 73 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFP---PGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQE----------RFRSIT 73 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCC---CCCCCceeeEEEEEEEEECCEEEEEEEEECCCcH----------HHHHHH
Confidence 478999999999999999999875432 12222244555555556666 458899999987 455555
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhhC-CCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKHA-PQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~~-~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..++..+|++++|+|++++.+.... .+...++... .+.|+++|+||+|+...+...... ...+.......++++||+
T Consensus 74 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~-~~~~~~~~~~~~~~~Sa~ 152 (169)
T cd04114 74 QSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQR-AEEFSDAQDMYYLETSAK 152 (169)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHH-HHHHHHHcCCeEEEeeCC
Confidence 6789999999999999876555432 2333333332 368999999999987654433222 222333222467999999
Q ss_pred CCCChHHHHHHhccc
Q 007334 276 TGLGMTELYEALRPS 290 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~ 290 (607)
+|.|++++++.|.+.
T Consensus 153 ~~~gv~~l~~~i~~~ 167 (169)
T cd04114 153 ESDNVEKLFLDLACR 167 (169)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999998754
No 188
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.80 E-value=2.1e-19 Score=158.67 Aligned_cols=161 Identities=19% Similarity=0.273 Sum_probs=133.5
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee---CCeeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL---GDLRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
+++.+||++-||||||+..++..+++..++.. +..|...+.+++ ...+++||||+|++ ++.+.|
T Consensus 9 frlivigdstvgkssll~~ft~gkfaelsdpt---vgvdffarlie~~pg~riklqlwdtagqe----------rfrsit 75 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYFTEGKFAELSDPT---VGVDFFARLIELRPGYRIKLQLWDTAGQE----------RFRSIT 75 (213)
T ss_pred EEEEEEcCCcccHHHHHHHHhcCcccccCCCc---cchHHHHHHHhcCCCcEEEEEEeeccchH----------HHHHHH
Confidence 67999999999999999999999887766433 566665554444 33689999999999 899999
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhh-----CCCCcE-EEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEE
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH-----APQIKP-IVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIA 271 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~-----~~~~p~-ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (607)
..|++++-++++|+|+++..+.+. +-.|+.+. .|.+++ .+|+.|+|+...+++..++....+..+|. .+++
T Consensus 76 ksyyrnsvgvllvyditnr~sfeh--v~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM-~FVE 152 (213)
T KOG0091|consen 76 KSYYRNSVGVLLVYDITNRESFEH--VENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGM-AFVE 152 (213)
T ss_pred HHHhhcccceEEEEeccchhhHHH--HHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCc-eEEE
Confidence 999999999999999999888776 45666553 355554 58999999999888888888888888898 8999
Q ss_pred eecCCCCChHHHHHHhccchHHHHhh
Q 007334 272 ISAETGLGMTELYEALRPSVEDYMLR 297 (607)
Q Consensus 272 iSA~~g~gi~eL~~~i~~~l~~~~~~ 297 (607)
+||++|.|+++.++.|.+.+...+.+
T Consensus 153 TSak~g~NVeEAF~mlaqeIf~~i~q 178 (213)
T KOG0091|consen 153 TSAKNGCNVEEAFDMLAQEIFQAIQQ 178 (213)
T ss_pred ecccCCCcHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999888765543
No 189
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.80 E-value=1.4e-18 Score=163.92 Aligned_cols=158 Identities=20% Similarity=0.233 Sum_probs=110.7
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHH-HH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTA-GM 196 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~-~~ 196 (607)
..+|+++|.+|||||||++++++...... ..+. .+.+.....+.+.+ ..+.+|||||++ ++. ..
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~-~~~t--~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~ 68 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPER-TEAT--IGVDFRERTVEIDGERIKVQLWDTAGQE----------RFRKSM 68 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCc-cccc--eeEEEEEEEEEECCeEEEEEEEeCCChH----------HHHHhh
Confidence 35899999999999999999997654211 1221 33444444455555 678999999987 333 23
Q ss_pred HHHHhhccCEEEEEEecCCCCCHhHHH-HHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEee
Q 007334 197 TANVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAIS 273 (607)
Q Consensus 197 ~~~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iS 273 (607)
...+++.+|++++|+|++++.+..+.. +.+.+... ..+.|+++|+||+|+.................... +++++|
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~S 147 (170)
T cd04115 69 VQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSM-PLFETS 147 (170)
T ss_pred HHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCC-cEEEEe
Confidence 556788999999999999877766532 33333332 24689999999999876654444433334444444 789999
Q ss_pred cCC---CCChHHHHHHhccch
Q 007334 274 AET---GLGMTELYEALRPSV 291 (607)
Q Consensus 274 A~~---g~gi~eL~~~i~~~l 291 (607)
|++ +.|+++++..+.+.+
T Consensus 148 a~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 148 AKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred ccCCcCCCCHHHHHHHHHHHh
Confidence 999 889999998887544
No 190
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.80 E-value=9.6e-19 Score=163.19 Aligned_cols=149 Identities=19% Similarity=0.200 Sum_probs=101.0
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHh
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVL 201 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 201 (607)
+|+++|.+|||||||++++....+. ...| |.......+......+.+|||||+. ++......++
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~--~~~p----t~g~~~~~~~~~~~~~~l~D~~G~~----------~~~~~~~~~~ 65 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIV--TTIP----TIGFNVETVEYKNISFTVWDVGGQD----------KIRPLWRHYF 65 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc--ccCC----CCCcceEEEEECCEEEEEEECCCCH----------hHHHHHHHHh
Confidence 7999999999999999999765542 2222 1222223445577899999999997 4555667789
Q ss_pred hccCEEEEEEecCCCCCHhHH--HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcC-C----CCcEEee
Q 007334 202 AKTQFAIFMIDVRSGLHPLDL--EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLG-F----GDPIAIS 273 (607)
Q Consensus 202 ~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~-~----~~~i~iS 273 (607)
+.||++++|+|+++..+..+. ++.+.+... ..+.|+++|+||+|+..... ..+....+ ... . ..++++|
T Consensus 66 ~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~i~~~~-~~~~~~~~~~~~~~~S 142 (159)
T cd04150 66 QNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMS--AAEVTDKL-GLHSLRNRNWYIQATC 142 (159)
T ss_pred cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCC--HHHHHHHh-CccccCCCCEEEEEee
Confidence 999999999999886544432 122333221 23589999999999865321 12211111 111 1 1346899
Q ss_pred cCCCCChHHHHHHhcc
Q 007334 274 AETGLGMTELYEALRP 289 (607)
Q Consensus 274 A~~g~gi~eL~~~i~~ 289 (607)
|++|.|+++++++|.+
T Consensus 143 ak~g~gv~~~~~~l~~ 158 (159)
T cd04150 143 ATSGDGLYEGLDWLSN 158 (159)
T ss_pred CCCCCCHHHHHHHHhc
Confidence 9999999999998864
No 191
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.80 E-value=1.4e-18 Score=164.01 Aligned_cols=155 Identities=17% Similarity=0.208 Sum_probs=107.9
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
+|++||.+|||||||++++++..+. .... .++..+.....+...+ ..+.+|||||+. ++......
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~--~~~~-~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~ 68 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFD--KNYK-ATIGVDFEMERFEILGVPFSLQLWDTAGQE----------RFKCIAST 68 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--CCCC-CceeeEEEEEEEEECCEEEEEEEEeCCChH----------HHHhhHHH
Confidence 6999999999999999999987642 2221 1133444434444444 579999999997 55566678
Q ss_pred HhhccCEEEEEEecCCCCCHhHHHHHHHHHh----hCC-CCcEEEEecCCCcccCCcC--cHHHHHHHHHhcCCCCcEEe
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDLEVGKWLRK----HAP-QIKPIVAMNKCESLHNGTG--SLAGAAAESLMLGFGDPIAI 272 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~----~~~-~~p~ilV~NK~D~~~~~~~--~~~~~~~~~~~~~~~~~i~i 272 (607)
+++.+|++++|+|+++..+... +.+|+.. ..+ ..|+++|+||+|+.+.... ...........++. +++++
T Consensus 69 ~~~~ad~~ilv~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~e~ 145 (170)
T cd04108 69 YYRGAQAIIIVFDLTDVASLEH--TRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQA-EYWSV 145 (170)
T ss_pred HhcCCCEEEEEEECcCHHHHHH--HHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCC-eEEEE
Confidence 8999999999999987554443 2344432 222 3568999999998654321 12222233444555 67999
Q ss_pred ecCCCCChHHHHHHhccchH
Q 007334 273 SAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 273 SA~~g~gi~eL~~~i~~~l~ 292 (607)
||++|.|++++++.|.+.+.
T Consensus 146 Sa~~g~~v~~lf~~l~~~~~ 165 (170)
T cd04108 146 SALSGENVREFFFRVAALTF 165 (170)
T ss_pred ECCCCCCHHHHHHHHHHHHH
Confidence 99999999999999987654
No 192
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.80 E-value=4.9e-19 Score=173.98 Aligned_cols=158 Identities=19% Similarity=0.223 Sum_probs=109.6
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee--CCeeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL--GDLRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|++||.+|||||||+++++...+.... .+. +..+.....+.. ....+.+|||||++ ++....
T Consensus 13 ~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~-~~t--ig~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~ 79 (219)
T PLN03071 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKY-EPT--IGVEVHPLDFFTNCGKIRFYCWDTAGQE----------KFGGLR 79 (219)
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCCCCCcc-CCc--cceeEEEEEEEECCeEEEEEEEECCCch----------hhhhhh
Confidence 468999999999999999999876542111 111 222222222222 34689999999998 444555
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAET 276 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~ 276 (607)
..++..+|++|+|+|++++.+.... .+...+.+...+.|+++|+||+|+.... ..... .......++ +++++||++
T Consensus 80 ~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~-v~~~~-~~~~~~~~~-~~~e~SAk~ 156 (219)
T PLN03071 80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAKQ-VTFHRKKNL-QYYEISAKS 156 (219)
T ss_pred HHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhcc-CCHHH-HHHHHhcCC-EEEEcCCCC
Confidence 6688999999999999988766652 2333344445679999999999986432 22222 233333444 679999999
Q ss_pred CCChHHHHHHhccchHH
Q 007334 277 GLGMTELYEALRPSVED 293 (607)
Q Consensus 277 g~gi~eL~~~i~~~l~~ 293 (607)
|.|++++|++|.+.+.+
T Consensus 157 ~~~i~~~f~~l~~~~~~ 173 (219)
T PLN03071 157 NYNFEKPFLYLARKLAG 173 (219)
T ss_pred CCCHHHHHHHHHHHHHc
Confidence 99999999999876643
No 193
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.80 E-value=5.9e-19 Score=169.95 Aligned_cols=158 Identities=18% Similarity=0.171 Sum_probs=109.6
Q ss_pred EEEEecCCCCchhHHHHHhhccc------eeeeccCCCCceeeeeEEEEeeeC--------------CeeEEEecCCCCc
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRR------EALVYNTPDDHVTRDIREGLAKLG--------------DLRFKVLDSAGLE 181 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~------~~~v~~~~~~~~T~~~~~~~~~~~--------------~~~~~liDTpG~~ 181 (607)
+|+++|++|||||||+++|++.. .......++ +|.+.......+. +..+.+|||||+.
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g--~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~ 79 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERG--ITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA 79 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcC--CeeeecceEEEecccccccccccccccCceEEEEECCCcH
Confidence 69999999999999999999731 111222344 6666665555544 6789999999985
Q ss_pred cccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcC--cHHHHHH
Q 007334 182 TEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTG--SLAGAAA 259 (607)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~--~~~~~~~ 259 (607)
.+..........+|++++|+|++++.+..+.+...+.... +.|+++|+||+|+...... .......
T Consensus 80 ----------~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~--~~~~iiv~NK~Dl~~~~~~~~~~~~~~~ 147 (192)
T cd01889 80 ----------SLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEIL--CKKLIVVLNKIDLIPEEERERKIEKMKK 147 (192)
T ss_pred ----------HHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHc--CCCEEEEEECcccCCHHHHHHHHHHHHH
Confidence 3444445667789999999999988776665444444433 6799999999998753211 1111111
Q ss_pred H----HHhcCC--CCcEEeecCCCCChHHHHHHhccchHH
Q 007334 260 E----SLMLGF--GDPIAISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 260 ~----~~~~~~--~~~i~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
. +...+. .+++++||++|.|+++|++.|.+.++.
T Consensus 148 ~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 148 KLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred HHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence 1 111111 268999999999999999999887653
No 194
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.80 E-value=1.1e-18 Score=164.33 Aligned_cols=157 Identities=17% Similarity=0.165 Sum_probs=110.4
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.+|||||||++++.+.... ..... ++.+.....+..++ ..+.+|||||+. ++.....
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~ 67 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFI--ESYDP--TIEDSYRKQVEIDGRQCDLEILDTAGTE----------QFTAMRE 67 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--cccCC--cchheEEEEEEECCEEEEEEEEeCCCcc----------cchhhhH
Confidence 47999999999999999999976642 22222 33333333334433 578999999987 4445556
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHH-HHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
.++..++++++|+|++++.+.+... +...+.+. ..+.|+++|+||+|+...+....+.........+..+++++||+
T Consensus 68 ~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 147 (168)
T cd04177 68 LYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSAR 147 (168)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCC
Confidence 6788999999999999876655522 33333332 34789999999999976554444444444444553368999999
Q ss_pred CCCChHHHHHHhccch
Q 007334 276 TGLGMTELYEALRPSV 291 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l 291 (607)
+|.|++++++++...+
T Consensus 148 ~~~~i~~~f~~i~~~~ 163 (168)
T cd04177 148 KRTNVDEVFIDLVRQI 163 (168)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999987644
No 195
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.80 E-value=7.1e-19 Score=166.37 Aligned_cols=145 Identities=23% Similarity=0.328 Sum_probs=99.4
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
..++|+++|.+|||||||+++|++.....+.++.|. ....+.+++..+.+|||||..... .....+
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~----~~~~~~~~~~~l~l~D~~G~~~~~----------~~~~~~ 78 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDIDTISPTLGF----QIKTLEYEGYKLNIWDVGGQKTLR----------PYWRNY 78 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCcCCcccc----ceEEEEECCEEEEEEECCCCHHHH----------HHHHHH
Confidence 357999999999999999999997743333333332 223455678889999999964321 123457
Q ss_pred HhhccEEEEEeccchh-----------hH----HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV-----------RA----VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~-----------~~----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
++.+|++++|+|+++. .. ...++|+++|+||+|+.+..... .+.+ .+.........+
T Consensus 79 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~----~~~~----~~~~~~~~~~~~ 150 (173)
T cd04154 79 FESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEE----EIRE----ALELDKISSHHW 150 (173)
T ss_pred hCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHH----HHHH----HhCccccCCCce
Confidence 7899999999999875 11 12578999999999997642111 1111 111000112356
Q ss_pred CEEEcccCCCCCHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVID 489 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~ 489 (607)
+++++||++|.|++++|+++..
T Consensus 151 ~~~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 151 RIQPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred EEEeccCCCCcCHHHHHHHHhc
Confidence 8999999999999999988753
No 196
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.80 E-value=4.2e-19 Score=165.42 Aligned_cols=143 Identities=20% Similarity=0.216 Sum_probs=103.6
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
||+++|++|||||||+|+|++.. ......++++.+.....+.+++. .+.+|||||..+.. ......+
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~----------~~~~~~~ 70 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDT-FDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFR----------SLIPSYI 70 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC-CCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHH----------HHHHHHh
Confidence 79999999999999999999875 34466788888888777777764 57899999953321 1234567
Q ss_pred hhccEEEEEeccchh-----------h-HHhc--CCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCE
Q 007334 404 MRAHVVALVLDAEEV-----------R-AVEE--GRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPV 469 (607)
Q Consensus 404 ~~ad~~llViD~~~~-----------~-~~~~--~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (607)
+.+|++++|+|++++ . .... +.|+++|+||+|+........ +.. . ... ...++++
T Consensus 71 ~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~--~~~-~----~~~----~~~~~~~ 139 (161)
T cd01861 71 RDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVST--EEG-E----KKA----KELNAMF 139 (161)
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCH--HHH-H----HHH----HHhCCEE
Confidence 889999999999875 0 1112 489999999999964322111 111 0 111 1125789
Q ss_pred EEcccCCCCCHHHHHHHHHHH
Q 007334 470 VFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 470 v~iSA~~g~gv~~l~~~i~~~ 490 (607)
+++||++|.|++++++.+.+.
T Consensus 140 ~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 140 IETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred EEEeCCCCCCHHHHHHHHHHh
Confidence 999999999999999988763
No 197
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.80 E-value=5.4e-19 Score=165.81 Aligned_cols=145 Identities=19% Similarity=0.163 Sum_probs=97.7
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||+++|++... .....+.++.+.....+..++ ..+.+|||||..+. . .....+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~---------~-~~~~~~ 70 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSF-TSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERY---------R-TITTAY 70 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHH---------H-HHHHHH
Confidence 6899999999999999999997643 222233333333333344444 46789999995432 1 123456
Q ss_pred HhhccEEEEEeccchh-----------hHH---hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV-----------RAV---EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 403 i~~ad~~llViD~~~~-----------~~~---~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
++.+|++++|+|+++. ... ....|+++|+||+|+.+..... .+.. .++.+ ..+.+
T Consensus 71 ~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~--~~~~-----~~~~~----~~~~~ 139 (165)
T cd01865 71 YRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVS--SERG-----RQLAD----QLGFE 139 (165)
T ss_pred ccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccC--HHHH-----HHHHH----HcCCE
Confidence 7899999999999875 111 1367999999999997643211 0111 11111 12458
Q ss_pred EEEcccCCCCCHHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
++++||++|.|++++|+.+...+
T Consensus 140 ~~~~Sa~~~~gv~~l~~~l~~~~ 162 (165)
T cd01865 140 FFEASAKENINVKQVFERLVDII 162 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999987754
No 198
>PRK04213 GTP-binding protein; Provisional
Probab=99.80 E-value=1.6e-18 Score=168.03 Aligned_cols=160 Identities=29% Similarity=0.437 Sum_probs=105.2
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCc-hhHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATS-GSILDRTAGMTA 198 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~-~~~~~~~~~~~~ 198 (607)
.++|+++|++|||||||+|+|++... .++..++ +|++.... .+. .+.+|||||+...... ......+...+.
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~~~-~~~~~~~--~t~~~~~~--~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGKKV-RVGKRPG--VTRKPNHY--DWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIV 81 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCc--eeeCceEE--eec--ceEEEeCCccccccccCHHHHHHHHHHHH
Confidence 57899999999999999999998764 3555666 77765433 222 6999999997422111 111123333333
Q ss_pred HHh----hccCEEEEEEecCCCCC-----------HhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHh
Q 007334 199 NVL----AKTQFAIFMIDVRSGLH-----------PLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLM 263 (607)
Q Consensus 199 ~~~----~~ad~vl~VvD~s~~~~-----------~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~ 263 (607)
.++ ..++++++|+|.+.... ..+.++...+... ++|+++|+||+|+..... .........
T Consensus 82 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~p~iiv~NK~Dl~~~~~---~~~~~~~~~ 156 (201)
T PRK04213 82 RYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLREL--GIPPIVAVNKMDKIKNRD---EVLDEIAER 156 (201)
T ss_pred HHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHc--CCCeEEEEECccccCcHH---HHHHHHHHH
Confidence 333 45689999999865321 1234455566554 789999999999865421 111122223
Q ss_pred cCC--------CCcEEeecCCCCChHHHHHHhccchH
Q 007334 264 LGF--------GDPIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 264 ~~~--------~~~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
++. .+++++||++| |+++++++|.+.+.
T Consensus 157 ~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~ 192 (201)
T PRK04213 157 LGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLH 192 (201)
T ss_pred hcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhc
Confidence 333 14699999999 99999999987654
No 199
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.80 E-value=6.4e-19 Score=164.02 Aligned_cols=150 Identities=19% Similarity=0.160 Sum_probs=102.5
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHh
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVL 201 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 201 (607)
+|+++|++|||||||+++|+..... ...| |.......+...+..+.+|||||+. .+...+..++
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~--~~~~----t~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~~~ 64 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV--TTIP----TIGFNVETVTYKNLKFQVWDLGGQT----------SIRPYWRCYY 64 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc--CcCC----ccCcCeEEEEECCEEEEEEECCCCH----------HHHHHHHHHh
Confidence 4899999999999999999876542 2122 2222233455677899999999997 4555667788
Q ss_pred hccCEEEEEEecCCCCCHhH--HHHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCC----CCcEEeec
Q 007334 202 AKTQFAIFMIDVRSGLHPLD--LEVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGF----GDPIAISA 274 (607)
Q Consensus 202 ~~ad~vl~VvD~s~~~~~~~--~~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~----~~~i~iSA 274 (607)
..+|++++|+|++++.+... ..+..+++.. ..++|+++|+||+|+..... ..+....+..... .+++++||
T Consensus 65 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~Sa 142 (158)
T cd04151 65 SNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALS--EAEISEKLGLSELKDRTWSIFKTSA 142 (158)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCC--HHHHHHHhCccccCCCcEEEEEeec
Confidence 99999999999987543332 2333344322 24689999999999875321 1121111111011 14899999
Q ss_pred CCCCChHHHHHHhcc
Q 007334 275 ETGLGMTELYEALRP 289 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~ 289 (607)
++|.|+++++++|.+
T Consensus 143 ~~~~gi~~l~~~l~~ 157 (158)
T cd04151 143 IKGEGLDEGMDWLVN 157 (158)
T ss_pred cCCCCHHHHHHHHhc
Confidence 999999999999864
No 200
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.80 E-value=5.6e-19 Score=165.40 Aligned_cols=145 Identities=19% Similarity=0.190 Sum_probs=98.9
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|++|||||||+|+|++... .....+.++.+.....+..++. .+.||||||..+. . .....+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~---------~-~~~~~~ 69 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRF-VSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEY---------L-EVRNEF 69 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHH---------H-HHHHHH
Confidence 4899999999999999999998753 3344454555554445555554 6679999995322 1 122356
Q ss_pred HhhccEEEEEeccchhh-----------H---Hh-----cCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCC
Q 007334 403 LMRAHVVALVLDAEEVR-----------A---VE-----EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQ 463 (607)
Q Consensus 403 i~~ad~~llViD~~~~~-----------~---~~-----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (607)
++.+|++|+|+|+++.. . .. .+.|+++|+||+|+.+...... +... ... .
T Consensus 70 ~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~-----~~~----~ 138 (168)
T cd04119 70 YKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSE--DEGR-----LWA----E 138 (168)
T ss_pred hccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCH--HHHH-----HHH----H
Confidence 77899999999998650 0 11 3589999999999974321110 1100 111 1
Q ss_pred CCCCCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 464 VTGIPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 464 ~~~~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
..+.+++++||++|.|++++|+.+.+.+
T Consensus 139 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 139 SKGFKYFETSACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred HcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 1246899999999999999999988654
No 201
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.80 E-value=7e-19 Score=170.70 Aligned_cols=147 Identities=19% Similarity=0.142 Sum_probs=100.1
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEc-C--eEEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQ-G--RTVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
+||+++|.+|||||||+++|++.. ......+.++.+.....+.++ + ..+.||||||..+. . .....
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~-~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~---------~-~~~~~ 69 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGI-FSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERF---------G-GMTRV 69 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC-CCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhh---------h-hhHHH
Confidence 489999999999999999999763 222233444455555555665 4 35779999996332 1 12346
Q ss_pred HHhhccEEEEEeccchhh----------HH--------hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCC
Q 007334 402 NLMRAHVVALVLDAEEVR----------AV--------EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQ 463 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~~----------~~--------~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (607)
++++||++|+|+|+++.. .+ ..++|+++|+||+|+.+..... .+.+. ++.+.
T Consensus 70 ~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~--~~~~~-----~~~~~--- 139 (201)
T cd04107 70 YYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKD--GEQMD-----QFCKE--- 139 (201)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccC--HHHHH-----HHHHH---
Confidence 778999999999998751 00 1467999999999997422111 11111 11111
Q ss_pred CCCCCEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 464 VTGIPVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 464 ~~~~~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
....+++++||++|.|++++|+.+.+.+.
T Consensus 140 ~~~~~~~e~Sak~~~~v~e~f~~l~~~l~ 168 (201)
T cd04107 140 NGFIGWFETSAKEGINIEEAMRFLVKNIL 168 (201)
T ss_pred cCCceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 11258999999999999999999987654
No 202
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.80 E-value=2.9e-19 Score=173.80 Aligned_cols=174 Identities=23% Similarity=0.292 Sum_probs=126.4
Q ss_pred ccccCCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcc-hhH-H
Q 007334 319 DESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPA-SLS-V 396 (607)
Q Consensus 319 ~~~~~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~-~~~-~ 396 (607)
++..+.+.||++|.||||||||.|.++|...+.++..+.||+..+.+.+.-+..++.++||||+...+...... ..+ .
T Consensus 67 ~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~l 146 (379)
T KOG1423|consen 67 EEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVL 146 (379)
T ss_pred hhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhh
Confidence 33456789999999999999999999999999999999999999999999999999999999998764222211 111 2
Q ss_pred HHHHHHHhhccEEEEEeccchh-----------hHHhcCCcEEEEEeCccCCCCcCch-HHHHHHH----HhcHHHHHhh
Q 007334 397 MQSRKNLMRAHVVALVLDAEEV-----------RAVEEGRGLVVIVNKMDLLSGRQNS-ALYKRVK----EAVPQEIQTV 460 (607)
Q Consensus 397 ~~~~~~i~~ad~~llViD~~~~-----------~~~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~----~~~~~~~~~~ 460 (607)
...+.++..||++++|+|+++. ...-..+|-|+|+||+|........ ...+.+. .....++++.
T Consensus 147 q~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~ 226 (379)
T KOG1423|consen 147 QNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEK 226 (379)
T ss_pred hCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHH
Confidence 2456888999999999999954 1112478999999999987653211 1111110 1111233333
Q ss_pred CCCCC-------------CCCEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 461 IPQVT-------------GIPVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 461 ~~~~~-------------~~~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
+.... +-.+|++||++|+|++++-+++.....
T Consensus 227 f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~ 271 (379)
T KOG1423|consen 227 FTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP 271 (379)
T ss_pred hccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence 33222 235999999999999999999987754
No 203
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.80 E-value=8.5e-19 Score=164.67 Aligned_cols=156 Identities=17% Similarity=0.188 Sum_probs=105.6
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeE-EEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIR-EGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANV 200 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~-~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 200 (607)
+|+++|.+|||||||+|+|++..+. ...+. +..+.. ...+...+.++.+|||||.. ++...+..+
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~~ 67 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFP--ENVPR--VLPEITIPADVTPERVPTTIVDTSSRP----------QDRANLAAE 67 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC--ccCCC--cccceEeeeeecCCeEEEEEEeCCCch----------hhhHHHhhh
Confidence 6999999999999999999987652 22222 111111 11122245689999999987 333344556
Q ss_pred hhccCEEEEEEecCCCCCHhHH--HHHHHHHhhCCCCcEEEEecCCCcccCCcCc-HHHHH-HHHHhc-CCCCcEEeecC
Q 007334 201 LAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHNGTGS-LAGAA-AESLML-GFGDPIAISAE 275 (607)
Q Consensus 201 ~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~-~~~~~-~~~~~~-~~~~~i~iSA~ 275 (607)
+..+|++++|+|++++.+..+. .+...++....+.|+++|+||+|+.+..... .+... ...... ....++++||+
T Consensus 68 ~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~ 147 (166)
T cd01893 68 IRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAK 147 (166)
T ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccc
Confidence 7899999999999987776652 2445555545578999999999997654321 11111 111122 22367999999
Q ss_pred CCCChHHHHHHhccch
Q 007334 276 TGLGMTELYEALRPSV 291 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l 291 (607)
+|.|++++++.+...+
T Consensus 148 ~~~~v~~lf~~~~~~~ 163 (166)
T cd01893 148 TLINVSEVFYYAQKAV 163 (166)
T ss_pred cccCHHHHHHHHHHHh
Confidence 9999999999887643
No 204
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.80 E-value=9.4e-19 Score=185.68 Aligned_cols=151 Identities=26% Similarity=0.322 Sum_probs=112.5
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEc-CeEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQ-GRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
..|++||.||||||||+|+|++.. ..++++|+||.++....+.++ +.++.||||||+.+.... . ..+ ....++++
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak-~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~-~-~gL-g~~fLrhi 234 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAK-PKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASE-G-VGL-GHQFLRHI 234 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCC-CccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccc-c-chH-HHHHHHHH
Confidence 479999999999999999999875 557899999999998888887 789999999998754211 1 011 23456778
Q ss_pred hhccEEEEEeccch-----h--------hHH------hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCC
Q 007334 404 MRAHVVALVLDAEE-----V--------RAV------EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQV 464 (607)
Q Consensus 404 ~~ad~~llViD~~~-----~--------~~~------~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (607)
.++|++|+|+|+++ + ..+ ..++|++||+||+|+... .+.++. +.+.+
T Consensus 235 er~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~---~e~l~~--------l~~~l--- 300 (424)
T PRK12297 235 ERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA---EENLEE--------FKEKL--- 300 (424)
T ss_pred hhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC---HHHHHH--------HHHHh---
Confidence 88999999999963 1 001 137899999999998432 111111 12222
Q ss_pred CCCCEEEcccCCCCCHHHHHHHHHHHHHHH
Q 007334 465 TGIPVVFTSALEGRGRIAVMHQVIDTYQKW 494 (607)
Q Consensus 465 ~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~ 494 (607)
..+++++||++++|++++++.+.+.+.+.
T Consensus 301 -~~~i~~iSA~tgeGI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 301 -GPKVFPISALTGQGLDELLYAVAELLEET 329 (424)
T ss_pred -CCcEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 15799999999999999999998876543
No 205
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.80 E-value=5.5e-19 Score=166.29 Aligned_cols=154 Identities=16% Similarity=0.165 Sum_probs=106.5
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee--CCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL--GDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
+|+++|.+|||||||+|+|++.... ....+ +..+........ ....+.+|||||++. +......
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~l~~~D~~g~~~----------~~~~~~~ 67 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFP-TEYVP---TVFDNYSATVTVDGKQVNLGLWDTAGQEE----------YDRLRPL 67 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC-CCCCC---ceeeeeEEEEEECCEEEEEEEEeCCCccc----------ccccchh
Confidence 7999999999999999999987652 11122 222222223333 345799999999982 2223334
Q ss_pred HhhccCEEEEEEecCCCCCHhHH--HHHHHHHhhCCCCcEEEEecCCCcccCCcC-----------cHHHHHHHHHhcCC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHNGTG-----------SLAGAAAESLMLGF 266 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~-----------~~~~~~~~~~~~~~ 266 (607)
.+..+|++++|+|++++.+.... .+...+.....+.|+++|+||+|+...... ..+.........+.
T Consensus 68 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 147 (171)
T cd00157 68 SYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGA 147 (171)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCC
Confidence 56889999999999886555442 244444444457999999999999865422 12333444455555
Q ss_pred CCcEEeecCCCCChHHHHHHhcc
Q 007334 267 GDPIAISAETGLGMTELYEALRP 289 (607)
Q Consensus 267 ~~~i~iSA~~g~gi~eL~~~i~~ 289 (607)
.+++++||++|.|++++++.|.+
T Consensus 148 ~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 148 IGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred eEEEEeecCCCCCHHHHHHHHhh
Confidence 57899999999999999998864
No 206
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.80 E-value=3.5e-19 Score=168.34 Aligned_cols=159 Identities=23% Similarity=0.229 Sum_probs=108.5
Q ss_pred EecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC-CeeEEEecCCCCccccCchhHHHHHHHHHHHHhhc
Q 007334 125 IIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG-DLRFKVLDSAGLETEATSGSILDRTAGMTANVLAK 203 (607)
Q Consensus 125 ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 203 (607)
|+|++|||||||+|+|++.+. .+.+.++ +|.+...+.+.+. +.++.+|||||+........ ........++..
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~--~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~---~~~~~~~~~~~~ 74 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPF--TTLEPNLGVVEVPDGARIQVADIPGLIEGASEGR---GLGNQFLAHIRR 74 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCc--eeecCcceEEEcCCCCeEEEEeccccchhhhcCC---CccHHHHHHHhc
Confidence 589999999999999999865 4556666 8888888888777 89999999999863221111 111223456788
Q ss_pred cCEEEEEEecCCCC------CHhHH-HHHHHHHhhC--------CCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCC
Q 007334 204 TQFAIFMIDVRSGL------HPLDL-EVGKWLRKHA--------PQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGD 268 (607)
Q Consensus 204 ad~vl~VvD~s~~~------~~~~~-~~~~~l~~~~--------~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~ 268 (607)
+|++++|+|+++.. ...+. .+...+.... .++|+++|+||+|+.......... ...........
T Consensus 75 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~-~~~~~~~~~~~ 153 (176)
T cd01881 75 ADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEEL-VRELALEEGAE 153 (176)
T ss_pred cCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHH-HHHHhcCCCCC
Confidence 99999999998873 22221 1222222211 368999999999997643221111 11222223347
Q ss_pred cEEeecCCCCChHHHHHHhccc
Q 007334 269 PIAISAETGLGMTELYEALRPS 290 (607)
Q Consensus 269 ~i~iSA~~g~gi~eL~~~i~~~ 290 (607)
++++||++|.|++++++.+...
T Consensus 154 ~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 154 VVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred EEEEehhhhcCHHHHHHHHHhh
Confidence 8999999999999999988653
No 207
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.80 E-value=5.7e-19 Score=165.68 Aligned_cols=148 Identities=22% Similarity=0.203 Sum_probs=98.8
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCce---eecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRV---LVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~---~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+|+++|++|||||||+|+|++.... .......+|.......+.+++..+.+|||||+.... .....+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~~~~ 70 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLR----------SLWDKY 70 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhH----------HHHHHH
Confidence 4899999999999999999864211 111122334444445677788999999999964331 123456
Q ss_pred HhhccEEEEEeccchhh-----------H----HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEVR-----------A----VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~~-----------~----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
+..+|++++|+|+++.. . ...++|+++++||+|+.......+ +.+.+.... +. ......
T Consensus 71 ~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~----~~~~~~~~~-~~-~~~~~~ 144 (167)
T cd04160 71 YAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEE----IKEVFQDKA-EE-IGRRDC 144 (167)
T ss_pred hCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHH----HHHHhcccc-cc-ccCCce
Confidence 78999999999998750 0 124789999999999876432111 111111100 00 112356
Q ss_pred CEEEcccCCCCCHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVID 489 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~ 489 (607)
+++++||++|.|+++++++|.+
T Consensus 145 ~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 145 LVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred EEEEeeCCCCcCHHHHHHHHhc
Confidence 8999999999999999988754
No 208
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.80 E-value=8.2e-19 Score=163.30 Aligned_cols=142 Identities=19% Similarity=0.218 Sum_probs=95.8
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhh
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMR 405 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ 405 (607)
||+++|++|||||||+++|....... ..|.+..+ ...+++.+..+.+|||||..+.. .....++..
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~--~~~t~~~~--~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~~~~~~ 66 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT--TIPTIGFN--VETVTYKNLKFQVWDLGGQTSIR----------PYWRCYYSN 66 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC--cCCccCcC--eEEEEECCEEEEEEECCCCHHHH----------HHHHHHhcC
Confidence 58999999999999999997654332 22222222 22455678899999999964331 123467789
Q ss_pred ccEEEEEeccchh-----------hHH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEE
Q 007334 406 AHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVV 470 (607)
Q Consensus 406 ad~~llViD~~~~-----------~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 470 (607)
+|++|+|+|+++. ... ..++|+++|+||+|+.+.... ..+ ...+........+.+++
T Consensus 67 ~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~----~~i----~~~~~~~~~~~~~~~~~ 138 (158)
T cd04151 67 TDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSE----AEI----SEKLGLSELKDRTWSIF 138 (158)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCH----HHH----HHHhCccccCCCcEEEE
Confidence 9999999999864 011 136899999999999754211 111 11111111112235799
Q ss_pred EcccCCCCCHHHHHHHHHH
Q 007334 471 FTSALEGRGRIAVMHQVID 489 (607)
Q Consensus 471 ~iSA~~g~gv~~l~~~i~~ 489 (607)
++||++|.|++++|+.+.+
T Consensus 139 ~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 139 KTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred EeeccCCCCHHHHHHHHhc
Confidence 9999999999999998864
No 209
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.80 E-value=5e-19 Score=172.58 Aligned_cols=150 Identities=21% Similarity=0.233 Sum_probs=108.7
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeecc------------------------------CCCCceeeeeEEEEeeeCCee
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYN------------------------------TPDDHVTRDIREGLAKLGDLR 171 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~------------------------------~~~~~~T~~~~~~~~~~~~~~ 171 (607)
+|+|+|++|+|||||+|+|+....+++.+ ..+ +|++.....+.+.+.+
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg--~T~~~~~~~~~~~~~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQG--ITIDVAYRYFSTPKRK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCC--cCeecceeEEecCCce
Confidence 48999999999999999998755443311 134 7889888888889999
Q ss_pred EEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCc
Q 007334 172 FKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGT 251 (607)
Q Consensus 172 ~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~ 251 (607)
+.+|||||+. ++...+..++..+|++++|+|++.+....+.....++... ...++|+|+||+|+.....
T Consensus 79 ~~liDTpG~~----------~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~-~~~~iIvviNK~D~~~~~~ 147 (208)
T cd04166 79 FIIADTPGHE----------QYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLL-GIRHVVVAVNKMDLVDYSE 147 (208)
T ss_pred EEEEECCcHH----------HHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHc-CCCcEEEEEEchhcccCCH
Confidence 9999999986 4445566678999999999999998777766555666554 1235788999999875321
Q ss_pred CcH----HHHHHHHHhcCCC--CcEEeecCCCCChHHHH
Q 007334 252 GSL----AGAAAESLMLGFG--DPIAISAETGLGMTELY 284 (607)
Q Consensus 252 ~~~----~~~~~~~~~~~~~--~~i~iSA~~g~gi~eL~ 284 (607)
... .+....+..+++. +++++||++|.|+++..
T Consensus 148 ~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~~ 186 (208)
T cd04166 148 EVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSRS 186 (208)
T ss_pred HHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccCC
Confidence 111 1112223345542 47999999999998643
No 210
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.80 E-value=6.3e-19 Score=164.45 Aligned_cols=143 Identities=17% Similarity=0.231 Sum_probs=98.1
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEc----CeEEEEEecCCCcccccccCcchhHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQ----GRTVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~----~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
+||+++|.+|||||||++++++.. +.....++++.+.....+.+. +..+.||||||..+. . ....
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~-~~~~ 69 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGI-FTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEF---------D-AITK 69 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHH---------H-HhHH
Confidence 489999999999999999999763 222233444455544445544 357889999995332 1 1234
Q ss_pred HHHhhccEEEEEeccchhh----------HH---hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEVR----------AV---EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~----------~~---~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
.+++.+|++++|+|+++.. .. ..++|+++|+||+|+........ +.. ..+.+ ..+.
T Consensus 70 ~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~--~~~-----~~~~~----~~~~ 138 (162)
T cd04106 70 AYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITN--EEA-----EALAK----RLQL 138 (162)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCH--HHH-----HHHHH----HcCC
Confidence 5778999999999998761 11 23789999999999976432111 110 11111 1256
Q ss_pred CEEEcccCCCCCHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVID 489 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~ 489 (607)
+++++||++|.|++++|+.+..
T Consensus 139 ~~~~~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 139 PLFRTSVKDDFNVTELFEYLAE 160 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 8999999999999999988764
No 211
>PLN03108 Rab family protein; Provisional
Probab=99.80 E-value=2.5e-18 Score=167.88 Aligned_cols=160 Identities=19% Similarity=0.227 Sum_probs=115.9
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+|+|.+|||||||+|+|++.++.... .+. +..+.....+.+.+ ..+.+|||||.+ .+...+
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~-~~t--i~~~~~~~~i~~~~~~i~l~l~Dt~G~~----------~~~~~~ 72 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVH-DLT--IGVEFGARMITIDNKPIKLQIWDTAGQE----------SFRSIT 72 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCC-CCC--ccceEEEEEEEECCEEEEEEEEeCCCcH----------HHHHHH
Confidence 468999999999999999999987653222 222 33444334444444 468899999987 455566
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..++..+|++++|+|++++.+.... .+...+... ..+.|+++|+||+|+...+....+.....+...++ +++++||+
T Consensus 73 ~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~ 151 (210)
T PLN03108 73 RSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGL-IFMEASAK 151 (210)
T ss_pred HHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCC-EEEEEeCC
Confidence 7788999999999999987665542 222222222 34789999999999987555544555555556666 78999999
Q ss_pred CCCChHHHHHHhccchHH
Q 007334 276 TGLGMTELYEALRPSVED 293 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~~ 293 (607)
+|.|++++|+++...+.+
T Consensus 152 ~~~~v~e~f~~l~~~~~~ 169 (210)
T PLN03108 152 TAQNVEEAFIKTAAKIYK 169 (210)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999998876644
No 212
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.80 E-value=9.4e-19 Score=167.02 Aligned_cols=154 Identities=18% Similarity=0.200 Sum_probs=106.7
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
..+|+++|.+|||||||++++...... ...| |.......+...+..+.+|||||+. ++...+..
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~--~~~~----T~~~~~~~~~~~~~~~~l~D~~G~~----------~~~~~~~~ 80 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVV--TTIP----TIGFNVETVEYKNLKFTMWDVGGQD----------KLRPLWRH 80 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc--ccCC----ccccceEEEEECCEEEEEEECCCCH----------hHHHHHHH
Confidence 368999999999999999999765442 2122 2222334456678899999999987 55566778
Q ss_pred HhhccCEEEEEEecCCCCCHhH--HHHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCC-------Cc
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLD--LEVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFG-------DP 269 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~--~~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~-------~~ 269 (607)
++..+|++|+|+|+++..+..+ .++.+.+... ..+.|+++|+||+|+..... ..+.. ..++.. .+
T Consensus 81 ~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~i~---~~l~~~~~~~~~~~~ 155 (182)
T PTZ00133 81 YYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMS--TTEVT---EKLGLHSVRQRNWYI 155 (182)
T ss_pred HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCC--HHHHH---HHhCCCcccCCcEEE
Confidence 8999999999999987654443 2233333321 23689999999999865321 12211 122221 24
Q ss_pred EEeecCCCCChHHHHHHhccchHHH
Q 007334 270 IAISAETGLGMTELYEALRPSVEDY 294 (607)
Q Consensus 270 i~iSA~~g~gi~eL~~~i~~~l~~~ 294 (607)
+++||++|.|+++++++|.+.+...
T Consensus 156 ~~~Sa~tg~gv~e~~~~l~~~i~~~ 180 (182)
T PTZ00133 156 QGCCATTAQGLYEGLDWLSANIKKS 180 (182)
T ss_pred EeeeCCCCCCHHHHHHHHHHHHHHh
Confidence 5789999999999999998776543
No 213
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.79 E-value=5.2e-19 Score=165.33 Aligned_cols=143 Identities=21% Similarity=0.220 Sum_probs=98.1
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
++|+++|.+|||||||+++++..... ..+.+|+.+.....+..++. .+.||||||..++. .. ...+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------~~-~~~~ 69 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFI--EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFA---------SM-RDLY 69 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCchhheEEEEEEECCEEEEEEEEECCCccccc---------ch-HHHH
Confidence 68999999999999999999976422 23344444555555666665 46689999964432 11 2246
Q ss_pred HhhccEEEEEeccchhh-----------HH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEVR-----------AV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~~-----------~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
++++|++++|+|.++.. .. ..++|+++|+||+|+........ .. . ..+.+. .+.
T Consensus 70 ~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~--~~-~----~~~~~~----~~~ 138 (163)
T cd04176 70 IKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSS--AE-G----RALAEE----WGC 138 (163)
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCH--HH-H----HHHHHH----hCC
Confidence 77899999999998851 11 14789999999999865322111 00 0 111111 246
Q ss_pred CEEEcccCCCCCHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
+++++||++|.|++++|..+.+.
T Consensus 139 ~~~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04176 139 PFMETSAKSKTMVNELFAEIVRQ 161 (163)
T ss_pred EEEEecCCCCCCHHHHHHHHHHh
Confidence 89999999999999999988753
No 214
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.79 E-value=1.6e-18 Score=160.92 Aligned_cols=154 Identities=18% Similarity=0.212 Sum_probs=110.8
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC--CeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG--DLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
+|+++|.+|||||||+|++++... ...... ++.+......... ...+.+|||||.. .+......
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~~~~~~ 66 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF--VEEYDP--TIEDSYRKTIVVDGETYTLDILDTAGQE----------EFSAMRDL 66 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC--CcCcCC--ChhHeEEEEEEECCEEEEEEEEECCChH----------HHHHHHHH
Confidence 589999999999999999998753 333333 4445555555555 3578999999987 44555667
Q ss_pred HhhccCEEEEEEecCCCCCHhHH-HHHHHHHhhC--CCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKHA--PQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAET 276 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~~--~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~ 276 (607)
.+..+|++++|+|.+++.+..+. .+...+.... ...|+++|+||+|+........+.........+. +++++||++
T Consensus 67 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~ 145 (160)
T cd00876 67 YIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGC-PFIETSAKD 145 (160)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCC-cEEEeccCC
Confidence 78999999999999886554442 2333333322 3789999999999987444444444444455554 789999999
Q ss_pred CCChHHHHHHhccc
Q 007334 277 GLGMTELYEALRPS 290 (607)
Q Consensus 277 g~gi~eL~~~i~~~ 290 (607)
|.|++++++.|.+.
T Consensus 146 ~~~i~~l~~~l~~~ 159 (160)
T cd00876 146 NINIDEVFKLLVRE 159 (160)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999998754
No 215
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.79 E-value=8.3e-19 Score=163.92 Aligned_cols=144 Identities=23% Similarity=0.249 Sum_probs=100.0
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
++|+++|.+|||||||++++++.. ......++++.+.....+..++. .+.+|||||..+.. .....+
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~----------~~~~~~ 69 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNE-FHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQ----------TITKQY 69 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCC-CCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHH----------hhHHHH
Confidence 479999999999999999999764 33333444555555556666664 56799999954321 123356
Q ss_pred HhhccEEEEEeccchhh-------------HH-hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEVR-------------AV-EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 403 i~~ad~~llViD~~~~~-------------~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
++.+|++++|+|.++.. .. ..+.|+++|+||+|+.+...... +....++...+.+
T Consensus 70 ~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~-----------~~~~~~~~~~~~~ 138 (161)
T cd04117 70 YRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGD-----------EQGNKLAKEYGMD 138 (161)
T ss_pred hcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCH-----------HHHHHHHHHcCCE
Confidence 77899999999998761 11 13689999999999975432111 1111111223468
Q ss_pred EEEcccCCCCCHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
++++||++|.|++++|++|.+.
T Consensus 139 ~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 139 FFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred EEEEeCCCCCCHHHHHHHHHhh
Confidence 9999999999999999998753
No 216
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.79 E-value=1.5e-18 Score=161.91 Aligned_cols=143 Identities=18% Similarity=0.196 Sum_probs=95.2
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHh
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLM 404 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~ 404 (607)
+||+++|.+|||||||++++...... ...|.+..+. ..+.+....+.+|||||+.+.. .....+++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~--~~~pt~g~~~--~~~~~~~~~~~l~D~~G~~~~~----------~~~~~~~~ 66 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNV--ETVEYKNISFTVWDVGGQDKIR----------PLWRHYFQ 66 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc--ccCCCCCcce--EEEEECCEEEEEEECCCCHhHH----------HHHHHHhc
Confidence 48999999999999999999755332 2333333222 2355677899999999964321 12345788
Q ss_pred hccEEEEEeccchh-----------hHH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCE
Q 007334 405 RAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPV 469 (607)
Q Consensus 405 ~ad~~llViD~~~~-----------~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (607)
+||++|+|+|+++. ... ....|+++++||+|+.+.....+.. ..+.........+.+
T Consensus 67 ~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~--------~~~~~~~~~~~~~~~ 138 (159)
T cd04150 67 NTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVT--------DKLGLHSLRNRNWYI 138 (159)
T ss_pred CCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHH--------HHhCccccCCCCEEE
Confidence 99999999999874 011 1358999999999996542211111 111100011223467
Q ss_pred EEcccCCCCCHHHHHHHHHH
Q 007334 470 VFTSALEGRGRIAVMHQVID 489 (607)
Q Consensus 470 v~iSA~~g~gv~~l~~~i~~ 489 (607)
+++||++|.|++++|++|.+
T Consensus 139 ~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 139 QATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred EEeeCCCCCCHHHHHHHHhc
Confidence 89999999999999988753
No 217
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.79 E-value=8e-19 Score=164.63 Aligned_cols=142 Identities=18% Similarity=0.189 Sum_probs=93.7
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEc--CeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQ--GRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||++++++... .....| ++.......+..+ ...+.+|||||..+.. .....+
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f-~~~~~~-t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----------~~~~~~ 69 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTF-RESYIP-TIEDTYRQVISCSKNICTLQITDTTGSHQFP----------AMQRLS 69 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CCCcCC-cchheEEEEEEECCEEEEEEEEECCCCCcch----------HHHHHH
Confidence 6899999999999999999997642 222222 2222222223333 3467899999965431 112346
Q ss_pred HhhccEEEEEeccchhh-----------H--Hh----cCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCC
Q 007334 403 LMRAHVVALVLDAEEVR-----------A--VE----EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVT 465 (607)
Q Consensus 403 i~~ad~~llViD~~~~~-----------~--~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (607)
+..+|++|+|+|+++.. . .. .++|+++|+||+|+.+...... +....++...
T Consensus 70 ~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~-----------~~~~~~~~~~ 138 (165)
T cd04140 70 ISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSS-----------NEGAACATEW 138 (165)
T ss_pred hhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecH-----------HHHHHHHHHh
Confidence 67899999999998751 0 11 4689999999999976322111 0001111122
Q ss_pred CCCEEEcccCCCCCHHHHHHHHHH
Q 007334 466 GIPVVFTSALEGRGRIAVMHQVID 489 (607)
Q Consensus 466 ~~~~v~iSA~~g~gv~~l~~~i~~ 489 (607)
+++++++||++|.|++++|+.|..
T Consensus 139 ~~~~~e~SA~~g~~v~~~f~~l~~ 162 (165)
T cd04140 139 NCAFMETSAKTNHNVQELFQELLN 162 (165)
T ss_pred CCcEEEeecCCCCCHHHHHHHHHh
Confidence 468999999999999999998875
No 218
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.79 E-value=9.8e-19 Score=164.58 Aligned_cols=145 Identities=22% Similarity=0.192 Sum_probs=98.7
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||++++++... .....+.++.+.....+..++ ..+.||||||..+ +. .....+
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~---------~~-~~~~~~ 73 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRF-QPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQES---------FR-SITRSY 73 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHH---------HH-HHHHHH
Confidence 6999999999999999999997643 222223333444444455554 4678999999532 21 123467
Q ss_pred HhhccEEEEEeccchh----------h-HH---hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV----------R-AV---EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 403 i~~ad~~llViD~~~~----------~-~~---~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
++.+|++|+|+|+++. . .. ..+.|+++|+||+|+....... .+... .+. ...+++
T Consensus 74 ~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~--~~~~~-----~~~----~~~~~~ 142 (168)
T cd01866 74 YRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVS--YEEGE-----AFA----KEHGLI 142 (168)
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCC--HHHHH-----HHH----HHcCCE
Confidence 7889999999999875 1 11 1468999999999997542211 11110 111 123568
Q ss_pred EEEcccCCCCCHHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
++++||++|.|++++|..+.+.+
T Consensus 143 ~~e~Sa~~~~~i~~~~~~~~~~~ 165 (168)
T cd01866 143 FMETSAKTASNVEEAFINTAKEI 165 (168)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999887754
No 219
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.79 E-value=8.2e-19 Score=167.16 Aligned_cols=155 Identities=15% Similarity=0.164 Sum_probs=102.4
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.+||+++|.++||||||+++++... + ...+..|..+.....+..++. .+.||||+|..++ ... ...
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~~~-f-~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~---------~~~-~~~ 72 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDC-F-PENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY---------DNV-RPL 72 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCC-C-CCccCCceeeeeEEEEEECCEEEEEEEEECCCchhh---------Hhh-hhh
Confidence 4799999999999999999999753 2 233433444444445566655 5679999995332 212 234
Q ss_pred HHhhccEEEEEeccchh----h----------HHhcCCcEEEEEeCccCCCCcCchHHHHH-HHHhcHHHHHhhCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEV----R----------AVEEGRGLVVIVNKMDLLSGRQNSALYKR-VKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~----~----------~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 466 (607)
++++||++|+|+|.++. . ....+.|+|||+||+||.+.......... -.+.+..+.++.++...+
T Consensus 73 ~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~ 152 (182)
T cd04172 73 SYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIG 152 (182)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcC
Confidence 67899999999999986 1 11236899999999998642110000000 001133333444444456
Q ss_pred -CCEEEcccCCCCC-HHHHHHHHHHH
Q 007334 467 -IPVVFTSALEGRG-RIAVMHQVIDT 490 (607)
Q Consensus 467 -~~~v~iSA~~g~g-v~~l~~~i~~~ 490 (607)
++++++||++|.| |+++|..+++.
T Consensus 153 ~~~~~E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 153 AATYIECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred CCEEEECCcCCCCCCHHHHHHHHHHH
Confidence 4899999999998 99999988874
No 220
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.79 E-value=7.7e-19 Score=166.36 Aligned_cols=153 Identities=18% Similarity=0.175 Sum_probs=100.4
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.++||||||+.+++... +. ..+..|..+.....+..++. .+.||||+|..++.. + ...+
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~-f~-~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~---------~-~~~~ 69 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNK-FP-TDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNR---------L-RPLS 69 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCC-CC-CCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccc---------c-chhh
Confidence 589999999999999999999653 32 23333433444444556654 567999999754421 1 1246
Q ss_pred HhhccEEEEEeccchh----h----------HHhcCCcEEEEEeCccCCCCcCchHHHHH-HHHhcHHHHHhhCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV----R----------AVEEGRGLVVIVNKMDLLSGRQNSALYKR-VKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~----~----------~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 467 (607)
+++||++|+|+|.++. . ....+.|++||+||+||.+.... .... -.+.+..+..+.++...+.
T Consensus 70 ~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~--~~~~~~~~~v~~~~~~~~a~~~~~ 147 (176)
T cd04133 70 YRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQY--LADHPGASPITTAQGEELRKQIGA 147 (176)
T ss_pred cCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhh--hhhccCCCCCCHHHHHHHHHHcCC
Confidence 7899999999999875 0 11246899999999999653210 0000 0001112222223333355
Q ss_pred -CEEEcccCCCCCHHHHHHHHHHHH
Q 007334 468 -PVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 468 -~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+++++||++|.||+++|+.+++..
T Consensus 148 ~~~~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 148 AAYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred CEEEECCCCcccCHHHHHHHHHHHH
Confidence 699999999999999999998754
No 221
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=5.7e-19 Score=182.31 Aligned_cols=171 Identities=23% Similarity=0.305 Sum_probs=131.4
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
-+.|+|+|+||||||||+|+|+..+.++|++.+| ||||.....++++|.++.|+||+|+... ..+............
T Consensus 268 gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~G--TTRDaiea~v~~~G~~v~L~DTAGiRe~-~~~~iE~~gI~rA~k 344 (531)
T KOG1191|consen 268 GLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPG--TTRDAIEAQVTVNGVPVRLSDTAGIREE-SNDGIEALGIERARK 344 (531)
T ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCC--cchhhheeEeecCCeEEEEEeccccccc-cCChhHHHhHHHHHH
Confidence 4789999999999999999999999999999999 9999999999999999999999999852 222333345566677
Q ss_pred HhhccCEEEEEEecCCCCCHhHHHHHHHHHhhC----------CCCcEEEEecCCCcccCCcCcHHHHH--HHHHhc-CC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHA----------PQIKPIVAMNKCESLHNGTGSLAGAA--AESLML-GF 266 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~----------~~~p~ilV~NK~D~~~~~~~~~~~~~--~~~~~~-~~ 266 (607)
.+..||++++|+|+-...+..+..+.+.|.... ...|+|+|.||+|+...-........ ...... .+
T Consensus 345 ~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~ 424 (531)
T KOG1191|consen 345 RIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVF 424 (531)
T ss_pred HHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCccc
Confidence 899999999999998778888877777776541 23789999999999875211111000 000111 23
Q ss_pred CCcEEeecCCCCChHHHHHHhccchHH
Q 007334 267 GDPIAISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 267 ~~~i~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
.....+||.+++|++.|.+.|.+.+..
T Consensus 425 ~i~~~vs~~tkeg~~~L~~all~~~~~ 451 (531)
T KOG1191|consen 425 PIVVEVSCTTKEGCERLSTALLNIVER 451 (531)
T ss_pred ceEEEeeechhhhHHHHHHHHHHHHHH
Confidence 233569999999999999999876654
No 222
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.79 E-value=1.4e-18 Score=164.81 Aligned_cols=151 Identities=19% Similarity=0.205 Sum_probs=103.8
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
..+|+++|.+|||||||++++..... ....|. +..+ .......+..+.+|||||+. ++...+..
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~--~~~~~t--~~~~--~~~~~~~~~~l~l~D~~G~~----------~~~~~~~~ 76 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGES--VTTIPT--IGFN--VETVTYKNISFTVWDVGGQD----------KIRPLWRH 76 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCC--CCcCCc--cccc--eEEEEECCEEEEEEECCCCh----------hhHHHHHH
Confidence 36899999999999999999975543 122221 2222 23445577899999999987 45566777
Q ss_pred HhhccCEEEEEEecCCCCCHhH--HHHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCC-------Cc
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLD--LEVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFG-------DP 269 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~--~~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~-------~~ 269 (607)
+++.||++|+|+|++++.+..+ ..+...+... ..+.|+++|+||+|+..... ..+... .++.. .+
T Consensus 77 ~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~i~~---~~~~~~~~~~~~~~ 151 (175)
T smart00177 77 YYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMK--AAEITE---KLGLHSIRDRNWYI 151 (175)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCC--HHHHHH---HhCccccCCCcEEE
Confidence 8999999999999998655443 1222333221 24689999999999865321 111111 12221 35
Q ss_pred EEeecCCCCChHHHHHHhccch
Q 007334 270 IAISAETGLGMTELYEALRPSV 291 (607)
Q Consensus 270 i~iSA~~g~gi~eL~~~i~~~l 291 (607)
+++||++|.|+++++++|.+.+
T Consensus 152 ~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 152 QPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred EEeeCCCCCCHHHHHHHHHHHh
Confidence 6899999999999999987653
No 223
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.79 E-value=1.5e-18 Score=162.16 Aligned_cols=144 Identities=19% Similarity=0.296 Sum_probs=96.2
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||++++++... .....+....+........++. .+.+|||||..++. .....+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~~~ 69 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGY-EPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQ----------TMHASY 69 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhh----------hhhHHH
Confidence 4899999999999999999997642 2222222222333333344444 56799999964331 122357
Q ss_pred HhhccEEEEEeccchhh----------HH---hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCE
Q 007334 403 LMRAHVVALVLDAEEVR----------AV---EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPV 469 (607)
Q Consensus 403 i~~ad~~llViD~~~~~----------~~---~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (607)
++.+|++|+|+|+++.. .. ..++|+++|+||+|+.... . +.. ..+.+ ..+.++
T Consensus 70 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~--~---~~~-----~~~~~----~~~~~~ 135 (161)
T cd04124 70 YHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSV--T---QKK-----FNFAE----KHNLPL 135 (161)
T ss_pred hCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhH--H---HHH-----HHHHH----HcCCeE
Confidence 78999999999998750 11 1368999999999985321 0 110 01111 125689
Q ss_pred EEcccCCCCCHHHHHHHHHHHHHH
Q 007334 470 VFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 470 v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
+++||++|.|++++|+.+.+.+.+
T Consensus 136 ~~~Sa~~~~gv~~l~~~l~~~~~~ 159 (161)
T cd04124 136 YYVSAADGTNVVKLFQDAIKLAVS 159 (161)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999876543
No 224
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.79 E-value=1.5e-18 Score=165.80 Aligned_cols=157 Identities=16% Similarity=0.101 Sum_probs=103.4
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEe---eeCCeeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLA---KLGDLRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~---~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
.+|+++|.+|||||||+++++..... ...|. .+.+.....+ ...+..+.+|||||++ ++...+
T Consensus 4 ~kv~~vG~~~~GKTsli~~~~~~~~~--~~~~t--~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~----------~~~~~~ 69 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFNEFV--NTVPT--KGFNTEKIKVSLGNSKGITFHFWDVGGQE----------KLRPLW 69 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCcC--CcCCc--cccceeEEEeeccCCCceEEEEEECCCcH----------hHHHHH
Confidence 57999999999999999999876542 22221 1122222222 2246789999999987 455556
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHHH-HH-HHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHH--HhcCC---CCc
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDLE-VG-KWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAES--LMLGF---GDP 269 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~~-~~-~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~--~~~~~---~~~ 269 (607)
..++..+|++++|+|++++.+..+.. +. ..+... ..++|+++|+||+|+..... .+...... ...+. .++
T Consensus 70 ~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 147 (183)
T cd04152 70 KSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALS--VSEVEKLLALHELSASTPWHV 147 (183)
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCC--HHHHHHHhCccccCCCCceEE
Confidence 67789999999999998865444321 11 122111 23689999999999864321 12111111 11111 146
Q ss_pred EEeecCCCCChHHHHHHhccchHH
Q 007334 270 IAISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 270 i~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
+++||++|.|++++++.|.+.+.+
T Consensus 148 ~~~SA~~~~gi~~l~~~l~~~l~~ 171 (183)
T cd04152 148 QPACAIIGEGLQEGLEKLYEMILK 171 (183)
T ss_pred EEeecccCCCHHHHHHHHHHHHHH
Confidence 899999999999999999887754
No 225
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.79 E-value=2e-18 Score=163.52 Aligned_cols=151 Identities=19% Similarity=0.116 Sum_probs=104.9
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
..+|+++|++|||||||+++|++...... . .|.........+.+.++.+|||||+. ++......
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~--~----~t~~~~~~~~~~~~~~~~l~D~~G~~----------~~~~~~~~ 78 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHT--S----PTIGSNVEEIVYKNIRFLMWDIGGQE----------SLRSSWNT 78 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCc--C----CccccceEEEEECCeEEEEEECCCCH----------HHHHHHHH
Confidence 46899999999999999999987654322 1 22223334556678899999999987 45555667
Q ss_pred HhhccCEEEEEEecCCCCCHhH--HHHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHH-----hcCCCCcEE
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLD--LEVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESL-----MLGFGDPIA 271 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~--~~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~-----~~~~~~~i~ 271 (607)
++..+|++++|+|++++.+... .++.+.++.. ..+.|+++|+||+|+.... ..++....+. ...+ ++++
T Consensus 79 ~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~--~~~~i~~~l~~~~~~~~~~-~~~~ 155 (174)
T cd04153 79 YYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAM--TPAEISESLGLTSIRDHTW-HIQG 155 (174)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCC--CHHHHHHHhCcccccCCce-EEEe
Confidence 8899999999999998654433 2233333322 2368999999999986532 1122111111 1122 4789
Q ss_pred eecCCCCChHHHHHHhcc
Q 007334 272 ISAETGLGMTELYEALRP 289 (607)
Q Consensus 272 iSA~~g~gi~eL~~~i~~ 289 (607)
+||++|.|+++++++|.+
T Consensus 156 ~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 156 CCALTGEGLPEGLDWIAS 173 (174)
T ss_pred cccCCCCCHHHHHHHHhc
Confidence 999999999999999864
No 226
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.79 E-value=2e-18 Score=164.94 Aligned_cols=150 Identities=18% Similarity=0.221 Sum_probs=98.4
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEE---cCeEEEEEecCCCcccccccCcchhHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEY---QGRTVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
.++|+++|.+|||||||++++++.... ...|.++.+.....+.. .+..+.+|||||..+. . ....
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~---------~-~~~~ 70 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFV--NTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKL---------R-PLWK 70 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcC--CcCCccccceeEEEeeccCCCceEEEEEECCCcHhH---------H-HHHH
Confidence 479999999999999999999876433 23333333333333322 4568899999995332 1 1223
Q ss_pred HHHhhccEEEEEeccchhh-----------H----HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEVR-----------A----VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVT 465 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~-----------~----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (607)
.+++.||++++|+|+++.. . ...++|+++|+||+|+........ .+.... +. ......
T Consensus 71 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~-~~~~~~-----~~-~~~~~~ 143 (183)
T cd04152 71 SYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSE-VEKLLA-----LH-ELSAST 143 (183)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHH-HHHHhC-----cc-ccCCCC
Confidence 5677899999999998750 0 124689999999999864321111 111100 00 011112
Q ss_pred CCCEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 466 GIPVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 466 ~~~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
..+++++||++|.|++++++.|.+.+.
T Consensus 144 ~~~~~~~SA~~~~gi~~l~~~l~~~l~ 170 (183)
T cd04152 144 PWHVQPACAIIGEGLQEGLEKLYEMIL 170 (183)
T ss_pred ceEEEEeecccCCCHHHHHHHHHHHHH
Confidence 357899999999999999999987664
No 227
>PTZ00369 Ras-like protein; Provisional
Probab=99.79 E-value=1.3e-18 Score=167.09 Aligned_cols=146 Identities=23% Similarity=0.249 Sum_probs=99.5
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.+||+++|.+|||||||++++++... ...+..|+.+.....+.+++. .+.||||||..+.. .+ ...
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------~l-~~~ 72 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHF--IDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYS---------AM-RDQ 72 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCC--CcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccch---------hh-HHH
Confidence 47999999999999999999997642 223333333444445555554 46689999965432 11 234
Q ss_pred HHhhccEEEEEeccchh-----------hHH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~-----------~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
+++.+|++++|+|+++. ... ..+.|+++|+||+|+.+...... +.. ..+.+ ..+
T Consensus 73 ~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~--~~~-----~~~~~----~~~ 141 (189)
T PTZ00369 73 YMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVST--GEG-----QELAK----SFG 141 (189)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCH--HHH-----HHHHH----HhC
Confidence 67789999999999875 111 13789999999999865422111 000 11111 124
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
.+++++||++|.|++++|+.+.+.+.
T Consensus 142 ~~~~e~Sak~~~gi~~~~~~l~~~l~ 167 (189)
T PTZ00369 142 IPFLETSAKQRVNVDEAFYELVREIR 167 (189)
T ss_pred CEEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999987654
No 228
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.79 E-value=1e-18 Score=169.86 Aligned_cols=148 Identities=25% Similarity=0.325 Sum_probs=106.4
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe-EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR-TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~-~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
.++|+++|++|||||||+|++++.. ..+.+.+++|.++....+.+++. .+.+|||||+.+.......+. ...+...
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~--~~~~~~~ 117 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGAD-VYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEA--FRSTLEE 117 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcch-hccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHH--HHHHHHH
Confidence 3699999999999999999999864 45566778888877777777665 899999999854321111111 1223345
Q ss_pred HhhccEEEEEeccchhh----------HH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEVR----------AV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 403 i~~ad~~llViD~~~~~----------~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
+..+|++++|+|++++. .+ ..++|+++|+||+|+.+..... .. ......+
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~---------------~~-~~~~~~~ 181 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE---------------ER-LEAGRPD 181 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH---------------HH-hhcCCCc
Confidence 67899999999998651 11 1368999999999997652110 01 1123568
Q ss_pred EEEcccCCCCCHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
++++||++|.|++++++.|...
T Consensus 182 ~~~~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 182 AVFISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred eEEEEcCCCCCHHHHHHHHHhh
Confidence 9999999999999999988653
No 229
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.79 E-value=2.3e-18 Score=166.63 Aligned_cols=156 Identities=16% Similarity=0.191 Sum_probs=107.2
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
+|+++|.+|||||||++++++.... ..... ++.+.....+.+.+ ..+.+|||||+. .+......
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~l~i~D~~G~~----------~~~~~~~~ 66 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE--PKYRR--TVEEMHRKEYEVGGVSLTLDILDTSGSY----------SFPAMRKL 66 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--ccCCC--chhhheeEEEEECCEEEEEEEEECCCch----------hhhHHHHH
Confidence 4899999999999999999987642 22222 33344444555555 578999999987 33344456
Q ss_pred HhhccCEEEEEEecCCCCCHhHHH-HHHHHHhh--CCCCcEEEEecCCCcccC-CcCcHHHHHHHHH-hcCCCCcEEeec
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKH--APQIKPIVAMNKCESLHN-GTGSLAGAAAESL-MLGFGDPIAISA 274 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~--~~~~p~ilV~NK~D~~~~-~~~~~~~~~~~~~-~~~~~~~i~iSA 274 (607)
++..+|++++|+|++++.+.++.. +...+.+. ..+.|+++|+||+|+... ............. ..+. .++++||
T Consensus 67 ~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~-~~~~~Sa 145 (198)
T cd04147 67 SIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNC-GFVETSA 145 (198)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCC-cEEEecC
Confidence 789999999999999876655422 32333332 236899999999998763 2222222222221 2222 6789999
Q ss_pred CCCCChHHHHHHhccchH
Q 007334 275 ETGLGMTELYEALRPSVE 292 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~~l~ 292 (607)
++|.|+++++++|.+.+.
T Consensus 146 ~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 146 KDNENVLEVFKELLRQAN 163 (198)
T ss_pred CCCCCHHHHHHHHHHHhh
Confidence 999999999999987654
No 230
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.79 E-value=1.5e-18 Score=166.56 Aligned_cols=152 Identities=29% Similarity=0.429 Sum_probs=111.2
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCcee-----------------ecCCCCceeeeEEEEEE--EcCeEEEEEecCCCccc
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVL-----------------VGPEAGLTRDSVRVHFE--YQGRTVYLVDTAGWLQR 385 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~-----------------~~~~~gtT~~~~~~~~~--~~~~~~~liDTpG~~~~ 385 (607)
+.|+++|+.++|||||+++|++..... .....+.|.+.....+. ..+..+.++||||+.++
T Consensus 4 ~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~f 83 (188)
T PF00009_consen 4 RNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHEDF 83 (188)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHHH
T ss_pred EEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccce
Confidence 579999999999999999998653211 11234778887777888 88999999999997543
Q ss_pred ccccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHH
Q 007334 386 EKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQ 455 (607)
Q Consensus 386 ~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~ 455 (607)
...+..++..+|++|+|+|+.++ .....++|+|+|+||+|+.. ..+.+..+.+..
T Consensus 84 ----------~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~-----~~~~~~~~~~~~ 148 (188)
T PF00009_consen 84 ----------IKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIE-----KELEEIIEEIKE 148 (188)
T ss_dssp ----------HHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSH-----HHHHHHHHHHHH
T ss_pred ----------eecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchh-----hhHHHHHHHHHH
Confidence 13445678899999999999876 33456899999999999982 222333333333
Q ss_pred HHHhhCCCC--CCCCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 456 EIQTVIPQV--TGIPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 456 ~~~~~~~~~--~~~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
.+.+..... ..+|++++||++|.|+++|++.+.+.+
T Consensus 149 ~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 149 KLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp HHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred HhccccccCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 333333222 257999999999999999999887753
No 231
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.79 E-value=1.2e-18 Score=170.44 Aligned_cols=153 Identities=20% Similarity=0.175 Sum_probs=97.4
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHh
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLM 404 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~ 404 (607)
+||+++|.+|||||||+++|++.... ...+.+..+.. ...+....+.||||||...+. . ....+++
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~--~~~~Tig~~~~--~~~~~~~~l~iwDt~G~e~~~---------~-l~~~~~~ 66 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFK--DTVSTVGGAFY--LKQWGPYNISIWDTAGREQFH---------G-LGSMYCR 66 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCC--CCCCccceEEE--EEEeeEEEEEEEeCCCcccch---------h-hHHHHhc
Confidence 48999999999999999999976532 22333333322 223455678999999964431 1 1234678
Q ss_pred hccEEEEEeccchhh-----------H---HhcCCcEEEEEeCccCCCCcC-----------------chHHHHHHHHhc
Q 007334 405 RAHVVALVLDAEEVR-----------A---VEEGRGLVVIVNKMDLLSGRQ-----------------NSALYKRVKEAV 453 (607)
Q Consensus 405 ~ad~~llViD~~~~~-----------~---~~~~~p~ivv~NK~Dl~~~~~-----------------~~~~~~~~~~~~ 453 (607)
.+|++|+|||+++.. . ...+.|+|+|+||+||.+... .....+.. ..+
T Consensus 67 ~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~-~~~ 145 (220)
T cd04126 67 GAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDA-KAF 145 (220)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHH-HHH
Confidence 999999999999850 1 123589999999999975110 00001110 011
Q ss_pred HHHHH------hhCCCCCCCCEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 454 PQEIQ------TVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 454 ~~~~~------~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
.+++. +.+....+++++++||++|.||+++|..+++.+.
T Consensus 146 a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 146 YKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred HHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 11110 0011112368999999999999999999987654
No 232
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.79 E-value=1e-18 Score=167.12 Aligned_cols=153 Identities=15% Similarity=0.167 Sum_probs=106.4
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
..+|+++|.+|||||||+|++.+.....+. .|.......+...+.++.+|||||+. .+......
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~~~~~------~t~~~~~~~~~~~~~~~~~~D~~G~~----------~~~~~~~~ 80 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRLAQHQ------PTQHPTSEELAIGNIKFTTFDLGGHQ----------QARRLWKD 80 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCCcccC------CccccceEEEEECCEEEEEEECCCCH----------HHHHHHHH
Confidence 478999999999999999999987654321 23333445556678899999999987 44455667
Q ss_pred HhhccCEEEEEEecCCCCCHhHH--HHHHHHHh-hCCCCcEEEEecCCCcccCCcCcHHHHHHHHH--h---------cC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRK-HAPQIKPIVAMNKCESLHNGTGSLAGAAAESL--M---------LG 265 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~-~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~--~---------~~ 265 (607)
++..+|++++|+|++++.+.... .+.+.+.. ...+.|+++|+||+|+... ...++....+. . ..
T Consensus 81 ~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~--~~~~~i~~~l~l~~~~~~~~~~~~~ 158 (184)
T smart00178 81 YFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYA--ASEDELRYALGLTNTTGSKGKVGVR 158 (184)
T ss_pred HhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC--CCHHHHHHHcCCCcccccccccCCc
Confidence 88999999999999886443331 22233322 1247899999999998643 12222221111 0 01
Q ss_pred CCCcEEeecCCCCChHHHHHHhccc
Q 007334 266 FGDPIAISAETGLGMTELYEALRPS 290 (607)
Q Consensus 266 ~~~~i~iSA~~g~gi~eL~~~i~~~ 290 (607)
...++++||++|+|+++++++|.+.
T Consensus 159 ~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 159 PLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred eeEEEEeecccCCChHHHHHHHHhh
Confidence 2247999999999999999998753
No 233
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.79 E-value=1.4e-18 Score=162.91 Aligned_cols=145 Identities=18% Similarity=0.173 Sum_probs=98.1
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.+||+++|++|||||||++++.+.... ....+..+.+.....+.+++. .+.||||||..+. . .....
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~---------~-~~~~~ 71 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFS-ERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERF---------R-TITQS 71 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCc-ccCCCccceEEEEEEEEECCEEEEEEEEECCChHHH---------H-HHHHH
Confidence 379999999999999999999865322 222233334444455666664 6789999995332 1 12345
Q ss_pred HHhhccEEEEEeccchh----------h-H---HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEV----------R-A---VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~----------~-~---~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
+++.+|++++|+|+++. . . ...+.|+++|+||+|+.+..... .+.. .++.+. ....
T Consensus 72 ~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~-----~~~~~~---~~~~ 141 (165)
T cd01864 72 YYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVL--FEEA-----CTLAEK---NGML 141 (165)
T ss_pred HhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccC--HHHH-----HHHHHH---cCCc
Confidence 67789999999999986 0 0 12368999999999997643211 1111 011111 1124
Q ss_pred CEEEcccCCCCCHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVID 489 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~ 489 (607)
+++++||++|.|++++|+.+.+
T Consensus 142 ~~~e~Sa~~~~~v~~~~~~l~~ 163 (165)
T cd01864 142 AVLETSAKESQNVEEAFLLMAT 163 (165)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999998875
No 234
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.79 E-value=1.3e-18 Score=169.23 Aligned_cols=170 Identities=22% Similarity=0.287 Sum_probs=129.0
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCc--hhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATS--GSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~--~~~~~~~~~~~ 197 (607)
...||+||.||||||||.|.++|.+.+.++.... ||+....+.+.-+..++.+.||||....... ..+.....+..
T Consensus 72 ~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~--TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~ 149 (379)
T KOG1423|consen 72 SLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVH--TTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNP 149 (379)
T ss_pred EEEEEEEcCCCcchhhhhhHhhCCcccccccccc--ceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCH
Confidence 4689999999999999999999999988998887 9999999998888999999999999854321 11111223344
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCc---------------HHHHHHHHH
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGS---------------LAGAAAESL 262 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~---------------~~~~~~~~~ 262 (607)
..++..||+++.|+|+++.-.+....++..|++. .++|-|+|.||+|..+..... ..+..+.+.
T Consensus 150 ~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~y-s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~ 228 (379)
T KOG1423|consen 150 RDAAQNADCVVVVVDASATRTPLHPRVLHMLEEY-SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFT 228 (379)
T ss_pred HHHHhhCCEEEEEEeccCCcCccChHHHHHHHHH-hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHhc
Confidence 5678999999999999986666666677777764 478999999999987653211 011111111
Q ss_pred hc-------------CCCCcEEeecCCCCChHHHHHHhccchH
Q 007334 263 ML-------------GFGDPIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 263 ~~-------------~~~~~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
.. +|..+|.+||++|+|+++|.++|....+
T Consensus 229 ~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~ 271 (379)
T KOG1423|consen 229 DVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP 271 (379)
T ss_pred cCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence 11 2445899999999999999999987654
No 235
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.79 E-value=1e-18 Score=162.93 Aligned_cols=144 Identities=19% Similarity=0.212 Sum_probs=98.2
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||+++|++... .....+..+.+.....+..++. .+.+|||||+.+.. .....+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~----------~~~~~~ 69 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKF-KEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFR----------SVTRSY 69 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHH----------HhHHHH
Confidence 4899999999999999999997642 2223333344444444555554 67799999964331 123456
Q ss_pred HhhccEEEEEeccchh----------h----HHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV----------R----AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 403 i~~ad~~llViD~~~~----------~----~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
++.+|++++|+|+++. . ....+.|+++|+||+|+........ +.. ..+.. ..+.+
T Consensus 70 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~--~~~-----~~~~~----~~~~~ 138 (161)
T cd04113 70 YRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTF--LEA-----SRFAQ----ENGLL 138 (161)
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCH--HHH-----HHHHH----HcCCE
Confidence 7889999999999985 0 1124789999999999975422111 111 01111 12478
Q ss_pred EEEcccCCCCCHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
++++||++|.|++++|+++.+.
T Consensus 139 ~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 139 FLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 9999999999999999988763
No 236
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.79 E-value=2.2e-18 Score=160.53 Aligned_cols=145 Identities=17% Similarity=0.198 Sum_probs=101.2
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHh
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVL 201 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 201 (607)
+|+++|++|||||||+|+|.+... +. . .|.... +.+. .+|||||+....+ ++.......+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~--~~---~--~~~~v~-----~~~~--~~iDtpG~~~~~~------~~~~~~~~~~ 62 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT--LA---R--KTQAVE-----FNDK--GDIDTPGEYFSHP------RWYHALITTL 62 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc--cC---c--cceEEE-----ECCC--CcccCCccccCCH------HHHHHHHHHH
Confidence 799999999999999999987542 11 1 222222 2222 2699999863321 3344445568
Q ss_pred hccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCC-CCcEEeecCCCCCh
Q 007334 202 AKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGF-GDPIAISAETGLGM 280 (607)
Q Consensus 202 ~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~-~~~i~iSA~~g~gi 280 (607)
..||++++|+|++++.+.... |+.+...+.|+++|+||+|+.... .+.....+...++ .+++++||++|+|+
T Consensus 63 ~~ad~il~v~d~~~~~s~~~~----~~~~~~~~~~ii~v~nK~Dl~~~~---~~~~~~~~~~~~~~~p~~~~Sa~~g~gi 135 (158)
T PRK15467 63 QDVDMLIYVHGANDPESRLPA----GLLDIGVSKRQIAVISKTDMPDAD---VAATRKLLLETGFEEPIFELNSHDPQSV 135 (158)
T ss_pred hcCCEEEEEEeCCCcccccCH----HHHhccCCCCeEEEEEccccCccc---HHHHHHHHHHcCCCCCEEEEECCCccCH
Confidence 899999999999987655442 333333467999999999986522 2333444556665 37899999999999
Q ss_pred HHHHHHhccchHH
Q 007334 281 TELYEALRPSVED 293 (607)
Q Consensus 281 ~eL~~~i~~~l~~ 293 (607)
++|++.+.+.+.+
T Consensus 136 ~~l~~~l~~~~~~ 148 (158)
T PRK15467 136 QQLVDYLASLTKQ 148 (158)
T ss_pred HHHHHHHHHhchh
Confidence 9999999877654
No 237
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.79 E-value=1.5e-18 Score=170.77 Aligned_cols=157 Identities=16% Similarity=0.131 Sum_probs=102.9
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.+||+++|.+|||||||+++|++.. +. ..+..|..+.....+..++. .+.||||||..++ .. ....
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~-F~-~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~---------~~-~~~~ 80 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDC-YP-ETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYY---------DN-VRPL 80 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCC-CC-CCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhh---------HH-HHHH
Confidence 4799999999999999999999653 22 23333333333344556654 5679999995332 11 1235
Q ss_pred HHhhccEEEEEeccchhh----H----------HhcCCcEEEEEeCccCCCCcCch-HHHHHHHHhcHHHHHhhCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEVR----A----------VEEGRGLVVIVNKMDLLSGRQNS-ALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~~----~----------~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
++++||++|+|||+++.. . ...+.|+|+|+||+||.+..... +....-.+.+..+.++.++...+
T Consensus 81 ~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~ 160 (232)
T cd04174 81 CYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLG 160 (232)
T ss_pred HcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcC
Confidence 778999999999998761 1 12468999999999986421100 00000001223333444444456
Q ss_pred C-CEEEcccCCCC-CHHHHHHHHHHHHH
Q 007334 467 I-PVVFTSALEGR-GRIAVMHQVIDTYQ 492 (607)
Q Consensus 467 ~-~~v~iSA~~g~-gv~~l~~~i~~~~~ 492 (607)
+ +++++||++|. ||+++|..++..+.
T Consensus 161 ~~~~~EtSAktg~~~V~e~F~~~~~~~~ 188 (232)
T cd04174 161 AEVYLECSAFTSEKSIHSIFRSASLLCL 188 (232)
T ss_pred CCEEEEccCCcCCcCHHHHHHHHHHHHH
Confidence 6 69999999998 89999999887653
No 238
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.79 E-value=3.2e-18 Score=163.34 Aligned_cols=148 Identities=18% Similarity=0.177 Sum_probs=98.9
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
.+||+++|.+|||||||++++........ .|++..+ ...+..++..+.+|||||..+.. .....++
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~~--~~T~~~~--~~~~~~~~~~~~l~D~~G~~~~~----------~~~~~~~ 82 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVVTT--IPTIGFN--VETVEYKNLKFTMWDVGGQDKLR----------PLWRHYY 82 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcccc--CCccccc--eEEEEECCEEEEEEECCCCHhHH----------HHHHHHh
Confidence 47999999999999999999975433222 2322222 23455678899999999963321 2334678
Q ss_pred hhccEEEEEeccchh-----------hHH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 404 MRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 404 ~~ad~~llViD~~~~-----------~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
+.+|++|+|+|+++. ... ...+|++||+||.|+.+..... .+. ..+.........++
T Consensus 83 ~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~----~i~----~~l~~~~~~~~~~~ 154 (182)
T PTZ00133 83 QNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTT----EVT----EKLGLHSVRQRNWY 154 (182)
T ss_pred cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHH----HHH----HHhCCCcccCCcEE
Confidence 899999999999875 111 1358999999999986542211 111 11111111112345
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
++++||++|.|++++|+.+.+.+.+
T Consensus 155 ~~~~Sa~tg~gv~e~~~~l~~~i~~ 179 (182)
T PTZ00133 155 IQGCCATTAQGLYEGLDWLSANIKK 179 (182)
T ss_pred EEeeeCCCCCCHHHHHHHHHHHHHH
Confidence 7789999999999999999876543
No 239
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.79 E-value=1.4e-18 Score=162.06 Aligned_cols=142 Identities=19% Similarity=0.266 Sum_probs=95.7
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCc--eeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDR--VLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~--~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
+|+++|.+|||||||+++|++... ....++.|.+.. .+.+.+..+.+|||||..+.. .....++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~----~~~~~~~~~~l~Dt~G~~~~~----------~~~~~~~ 66 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE----SFEKGNLSFTAFDMSGQGKYR----------GLWEHYY 66 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE----EEEECCEEEEEEECCCCHhhH----------HHHHHHH
Confidence 489999999999999999997632 233444554332 345678899999999964331 1233567
Q ss_pred hhccEEEEEeccchhh-----------H------HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 404 MRAHVVALVLDAEEVR-----------A------VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 404 ~~ad~~llViD~~~~~-----------~------~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
..+|++|+|+|+++.. . ...++|+++|+||+|+.+..... .+...+. +.. . ....
T Consensus 67 ~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~----~~~~~l~--~~~-~-~~~~ 138 (162)
T cd04157 67 KNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAV----KITQLLG--LEN-I-KDKP 138 (162)
T ss_pred ccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHH----HHHHHhC--Ccc-c-cCce
Confidence 8999999999998751 0 01468999999999997542211 1111110 000 0 1112
Q ss_pred CCEEEcccCCCCCHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVID 489 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~ 489 (607)
.+++++||++|.|++++|++|.+
T Consensus 139 ~~~~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 139 WHIFASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred EEEEEeeCCCCCchHHHHHHHhc
Confidence 46899999999999999998754
No 240
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.79 E-value=1e-18 Score=166.03 Aligned_cols=154 Identities=16% Similarity=0.150 Sum_probs=101.0
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||++++++.. + ...+..|..+.....+.+++. .+.||||||..+.. .. ...+
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~-f-~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~---------~~-~~~~ 69 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDC-Y-PETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYD---------NV-RPLC 69 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc-C-CCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhh---------hc-chhh
Confidence 589999999999999999999763 2 233434433434445566665 56799999964331 11 1246
Q ss_pred HhhccEEEEEeccchh----h----------HHhcCCcEEEEEeCccCCCCcCchHHHHHHH-HhcHHHHHhhCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV----R----------AVEEGRGLVVIVNKMDLLSGRQNSALYKRVK-EAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~----~----------~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 467 (607)
++.||++|+|+|.++. . ....+.|+|+|+||+||.+.......+.... +.+..+.++.++...++
T Consensus 70 ~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~ 149 (178)
T cd04131 70 YPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGA 149 (178)
T ss_pred cCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCC
Confidence 7789999999999876 1 1124789999999999964211000000000 11233333444444565
Q ss_pred -CEEEcccCCCCC-HHHHHHHHHHH
Q 007334 468 -PVVFTSALEGRG-RIAVMHQVIDT 490 (607)
Q Consensus 468 -~~v~iSA~~g~g-v~~l~~~i~~~ 490 (607)
+++++||++|+| |+++|..+++.
T Consensus 150 ~~~~E~SA~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 150 EIYLECSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred CEEEECccCcCCcCHHHHHHHHHHH
Confidence 799999999995 99999988874
No 241
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.78 E-value=1.6e-18 Score=161.76 Aligned_cols=144 Identities=21% Similarity=0.200 Sum_probs=101.4
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|++|||||||+++|++... .....+.++.+.....+.+++ ..+.+|||||..+. . ......
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~---------~-~~~~~~ 69 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKF-SEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERF---------R-SITSSY 69 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHH---------H-HHHHHH
Confidence 4899999999999999999997643 333445555555555566666 46789999995332 1 223456
Q ss_pred HhhccEEEEEeccchhh----------H---H-hcCCcEEEEEeCccCCCCcCch-HHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEVR----------A---V-EEGRGLVVIVNKMDLLSGRQNS-ALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~~----------~---~-~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
+..+|++++|+|++++. . . ..++|+++|+||+|+....... +.... +. ...++
T Consensus 70 ~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~--------~~----~~~~~ 137 (164)
T smart00175 70 YRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEA--------FA----EEHGL 137 (164)
T ss_pred hCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHH--------HH----HHcCC
Confidence 77899999999998761 0 0 1468999999999987632211 11111 11 11256
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+++++||++|.|++++++.+.+.+
T Consensus 138 ~~~e~Sa~~~~~i~~l~~~i~~~~ 161 (164)
T smart00175 138 PFFETSAKTNTNVEEAFEELAREI 161 (164)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHH
Confidence 899999999999999999988764
No 242
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.78 E-value=8.2e-19 Score=171.39 Aligned_cols=150 Identities=22% Similarity=0.221 Sum_probs=103.1
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEc-C--eEEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQ-G--RTVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
+||+++|.+|||||||+++|++..... ...++++.+.....+.+. + ..+.+|||||.... . .....
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~-~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~---------~-~~~~~ 71 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAE-VSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERF---------R-SITRS 71 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-CCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhH---------H-HHHHH
Confidence 799999999999999999999765322 233455556655555553 3 36789999995432 1 12345
Q ss_pred HHhhccEEEEEeccchh-----------hHH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~-----------~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
+++.+|++|+|+|+++. ... ....|+++|+||+|+.+...... +.. ..+.+ ..+
T Consensus 72 ~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~--~~~-----~~~~~----~~~ 140 (211)
T cd04111 72 YYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTR--EEA-----EKLAK----DLG 140 (211)
T ss_pred HhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCH--HHH-----HHHHH----HhC
Confidence 77889999999999875 111 12467899999999976422111 000 11111 234
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHHHHHhc
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTYQKWCL 496 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~ 496 (607)
.+++++||++|.|++++|+.|.+.+.+...
T Consensus 141 ~~~~e~Sak~g~~v~e~f~~l~~~~~~~~~ 170 (211)
T cd04111 141 MKYIETSARTGDNVEEAFELLTQEIYERIK 170 (211)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 789999999999999999999887655433
No 243
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.78 E-value=1e-18 Score=167.60 Aligned_cols=146 Identities=20% Similarity=0.206 Sum_probs=99.5
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||+++|++... .....+..+.+.....+..++. .+.+|||||..+.. ......
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~----------~~~~~~ 69 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEF-SESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFR----------SLNNSY 69 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHH----------hhHHHH
Confidence 4899999999999999999997643 2222333344444445555554 56799999953321 123456
Q ss_pred HhhccEEEEEeccchhh-----------H---HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEVR-----------A---VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 403 i~~ad~~llViD~~~~~-----------~---~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
++.+|++|+|+|+++.. . .....|+++|+||+|+.+...... +....++...+++
T Consensus 70 ~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~-----------~~~~~~~~~~~~~ 138 (188)
T cd04125 70 YRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDS-----------NIAKSFCDSLNIP 138 (188)
T ss_pred ccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCH-----------HHHHHHHHHcCCe
Confidence 78899999999998761 0 113579999999999975432111 0111111123568
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
++++||++|.|++++|+.+.+.+.
T Consensus 139 ~~evSa~~~~~i~~~f~~l~~~~~ 162 (188)
T cd04125 139 FFETSAKQSINVEEAFILLVKLII 162 (188)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999887654
No 244
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.78 E-value=2.3e-18 Score=160.30 Aligned_cols=150 Identities=20% Similarity=0.232 Sum_probs=100.2
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee-CCeeEEEecCCCCccccCchhHHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL-GDLRFKVLDSAGLETEATSGSILDRTAGMTANV 200 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 200 (607)
+|+++|.+|||||||+|+|++...... .| |.......+.. ....+.+|||||+. .+......+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~--~~----t~~~~~~~~~~~~~~~l~i~D~~G~~----------~~~~~~~~~ 64 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT--IP----TVGFNVEMLQLEKHLSLTVWDVGGQE----------KMRTVWKCY 64 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc--cC----ccCcceEEEEeCCceEEEEEECCCCH----------hHHHHHHHH
Confidence 489999999999999999998765322 22 11122223333 35689999999987 444555677
Q ss_pred hhccCEEEEEEecCCCCCHhH--HHHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCC-----CCcEEe
Q 007334 201 LAKTQFAIFMIDVRSGLHPLD--LEVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGF-----GDPIAI 272 (607)
Q Consensus 201 ~~~ad~vl~VvD~s~~~~~~~--~~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~-----~~~i~i 272 (607)
+..+|++++|+|++++.+... ..+.++++.. ..+.|+++|+||+|+..... ..+.........+ .+++++
T Consensus 65 ~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~ 142 (160)
T cd04156 65 LENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALT--AEEITRRFKLKKYCSDRDWYVQPC 142 (160)
T ss_pred hccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcC--HHHHHHHcCCcccCCCCcEEEEec
Confidence 899999999999998754433 2233333322 24789999999999864321 1221111110111 147899
Q ss_pred ecCCCCChHHHHHHhcc
Q 007334 273 SAETGLGMTELYEALRP 289 (607)
Q Consensus 273 SA~~g~gi~eL~~~i~~ 289 (607)
||++|+|++++++.|..
T Consensus 143 Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 143 SAVTGEGLAEAFRKLAS 159 (160)
T ss_pred ccccCCChHHHHHHHhc
Confidence 99999999999998864
No 245
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.78 E-value=1.1e-18 Score=165.25 Aligned_cols=153 Identities=18% Similarity=0.201 Sum_probs=98.7
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||+.+++... + ...+..|..+.....+.+++. .+.||||||..+.. . ....+
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~-f-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------~-~~~~~ 69 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNA-F-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYD---------R-LRPLS 69 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC-C-CCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhh---------h-hhhhh
Confidence 589999999999999999999653 2 233444444444445556654 56799999964331 1 11246
Q ss_pred HhhccEEEEEeccchhh--------------HHhcCCcEEEEEeCccCCCCcCchHHHHH-HHHhcHHHHHhhCCCCCC-
Q 007334 403 LMRAHVVALVLDAEEVR--------------AVEEGRGLVVIVNKMDLLSGRQNSALYKR-VKEAVPQEIQTVIPQVTG- 466 (607)
Q Consensus 403 i~~ad~~llViD~~~~~--------------~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~- 466 (607)
++++|++|+|+|+++.. ....+.|+++|+||+|+.+.....+.... ....+..+..+.++...+
T Consensus 70 ~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 149 (174)
T cd01871 70 YPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA 149 (174)
T ss_pred cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCC
Confidence 77899999999998750 01136899999999999653211100000 001122222222222223
Q ss_pred CCEEEcccCCCCCHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVID 489 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~ 489 (607)
.+++++||++|.|++++|+.+.+
T Consensus 150 ~~~~e~Sa~~~~~i~~~f~~l~~ 172 (174)
T cd01871 150 VKYLECSALTQKGLKTVFDEAIR 172 (174)
T ss_pred cEEEEecccccCCHHHHHHHHHH
Confidence 58999999999999999998875
No 246
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.78 E-value=2.4e-18 Score=163.01 Aligned_cols=144 Identities=20% Similarity=0.235 Sum_probs=98.1
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
..+|+++|.+|||||||+++|++.......++.|.+ ...+.+++..+.+|||||..+.. .....++
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~----~~~~~~~~~~~~l~D~~G~~~~~----------~~~~~~~ 80 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSN----VEEIVYKNIRFLMWDIGGQESLR----------SSWNTYY 80 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccc----eEEEEECCeEEEEEECCCCHHHH----------HHHHHHh
Confidence 368999999999999999999876543333333322 23566778899999999964321 1223567
Q ss_pred hhccEEEEEeccchhh-----------HH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 404 MRAHVVALVLDAEEVR-----------AV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 404 ~~ad~~llViD~~~~~-----------~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
+.+|++++|+|+++.. .. ..++|+++++||+|+....... .+. +.+..........+
T Consensus 81 ~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~----~i~----~~l~~~~~~~~~~~ 152 (174)
T cd04153 81 TNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPA----EIS----ESLGLTSIRDHTWH 152 (174)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHH----HHH----HHhCcccccCCceE
Confidence 8999999999998751 11 1358999999999987532211 111 11111111123457
Q ss_pred EEEcccCCCCCHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVID 489 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~ 489 (607)
++++||++|.|++++|+.|.+
T Consensus 153 ~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 153 IQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred EEecccCCCCCHHHHHHHHhc
Confidence 999999999999999998753
No 247
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.78 E-value=1.5e-18 Score=166.88 Aligned_cols=156 Identities=17% Similarity=0.179 Sum_probs=101.3
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.+||+++|.+|||||||+++++... +. ..+..|..+.....+..++. .+.||||||..+. ... ...
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~-f~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~---------~~l-~~~ 70 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNA-FP-KEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEY---------DRL-RTL 70 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCC-CC-cCCCCceEeeeEEEEEECCEEEEEEEEECCCchhh---------hhh-hhh
Confidence 3799999999999999999999653 22 23333333434444455554 5679999996433 212 234
Q ss_pred HHhhccEEEEEeccchh------h--H------HhcCCcEEEEEeCccCCCCcCchHHHHHH-HHhcHHHHHhhCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEV------R--A------VEEGRGLVVIVNKMDLLSGRQNSALYKRV-KEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~------~--~------~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 466 (607)
++++||++|+|+|+++. . . ...+.|++||+||.||.+.....+..... .+.+..+..+.++...+
T Consensus 71 ~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~ 150 (191)
T cd01875 71 SYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIH 150 (191)
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcC
Confidence 67889999999999876 0 1 11478999999999996542211111110 01112222233333334
Q ss_pred -CCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 467 -IPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 467 -~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
.+++++||++|.|++++|+.+++.+
T Consensus 151 ~~~~~e~SAk~g~~v~e~f~~l~~~~ 176 (191)
T cd01875 151 AVKYLECSALNQDGVKEVFAEAVRAV 176 (191)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 5899999999999999999988754
No 248
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.78 E-value=1.1e-18 Score=164.97 Aligned_cols=146 Identities=27% Similarity=0.287 Sum_probs=105.8
Q ss_pred EEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEc-CeEEEEEecCCCcccccccCcchhHHHHHHHHHhhcc
Q 007334 329 IVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQ-GRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAH 407 (607)
Q Consensus 329 ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad 407 (607)
++|++|||||||+|+|++.+. .+++++++|.++....+.++ +..+.+|||||+.+.... .+.+. .....++..+|
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~--~~~~~-~~~~~~~~~~d 76 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASE--GRGLG-NQFLAHIRRAD 76 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhc--CCCcc-HHHHHHHhccC
Confidence 579999999999999998754 67888999999888888888 899999999998543111 01111 13345677899
Q ss_pred EEEEEeccchhh-----------------H--H--------hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhh
Q 007334 408 VVALVLDAEEVR-----------------A--V--------EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTV 460 (607)
Q Consensus 408 ~~llViD~~~~~-----------------~--~--------~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 460 (607)
++++|+|+++.. . . ..++|+++|+||+|+.......... ...
T Consensus 77 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~-----------~~~ 145 (176)
T cd01881 77 AILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEEL-----------VRE 145 (176)
T ss_pred EEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHH-----------HHH
Confidence 999999987531 0 0 1478999999999997653211100 111
Q ss_pred CCCCCCCCEEEcccCCCCCHHHHHHHHHH
Q 007334 461 IPQVTGIPVVFTSALEGRGRIAVMHQVID 489 (607)
Q Consensus 461 ~~~~~~~~~v~iSA~~g~gv~~l~~~i~~ 489 (607)
.......+++++||++|.|++++++.+..
T Consensus 146 ~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~ 174 (176)
T cd01881 146 LALEEGAEVVPISAKTEEGLDELIRAIYE 174 (176)
T ss_pred HhcCCCCCEEEEehhhhcCHHHHHHHHHh
Confidence 12234568999999999999999988765
No 249
>PRK04213 GTP-binding protein; Provisional
Probab=99.78 E-value=2.1e-18 Score=167.27 Aligned_cols=157 Identities=24% Similarity=0.272 Sum_probs=101.4
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCccccc-c-cCcchhHH---HH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREK-E-KGPASLSV---MQ 398 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~-~-~~~~~~~~---~~ 398 (607)
.++|+++|.+|||||||+|+|++.. ..++..+|+|++.... .++ .+.+|||||+..... . ...+.+.. ..
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~~-~~~~~~~~~t~~~~~~--~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGKK-VRVGKRPGVTRKPNHY--DWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRY 83 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCceeeCceEE--eec--ceEEEeCCccccccccCHHHHHHHHHHHHHH
Confidence 4799999999999999999999875 5677889999886543 333 689999999643211 0 00122211 11
Q ss_pred HHHHHhhccEEEEEeccchh---------------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHH
Q 007334 399 SRKNLMRAHVVALVLDAEEV---------------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEI 457 (607)
Q Consensus 399 ~~~~i~~ad~~llViD~~~~---------------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 457 (607)
....+..+|++++|+|++.. .....++|+++|+||+|+.+.. .+..+.+ ...+
T Consensus 84 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~----~~~~ 157 (201)
T PRK04213 84 IEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNR--DEVLDEI----AERL 157 (201)
T ss_pred HHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcH--HHHHHHH----HHHh
Confidence 12234457899999999642 1123589999999999997542 1112222 1111
Q ss_pred Hhh-CCCCCCCCEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 458 QTV-IPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 458 ~~~-~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
... .....+.+++++||++| |++++++.|.+.+.
T Consensus 158 ~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~ 192 (201)
T PRK04213 158 GLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLH 192 (201)
T ss_pred cCCccccccCCcEEEEecccC-CHHHHHHHHHHhhc
Confidence 100 00011247899999999 99999999887543
No 250
>PLN03110 Rab GTPase; Provisional
Probab=99.78 E-value=1.7e-18 Score=169.92 Aligned_cols=149 Identities=19% Similarity=0.229 Sum_probs=105.3
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..+||+++|++|||||||+++|++.. ......++++.+.....+.+++. .+.||||||..+. . ....
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~-~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~---------~-~~~~ 79 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNE-FCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERY---------R-AITS 79 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHH---------H-HHHH
Confidence 34799999999999999999999764 33344455556665666666664 6789999995332 1 1234
Q ss_pred HHHhhccEEEEEeccchh-------hH-------HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEV-------RA-------VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~-------~~-------~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
.+++.+|++|+|+|.++. .. ...+.|+++|+||+|+........ +..+.++...+
T Consensus 80 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~-----------~~~~~l~~~~~ 148 (216)
T PLN03110 80 AYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAE-----------EDGQALAEKEG 148 (216)
T ss_pred HHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCH-----------HHHHHHHHHcC
Confidence 577899999999999865 00 123689999999999865432211 11111111236
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
++++++||++|.|++++|+.+...+.+
T Consensus 149 ~~~~e~SA~~g~~v~~lf~~l~~~i~~ 175 (216)
T PLN03110 149 LSFLETSALEATNVEKAFQTILLEIYH 175 (216)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 799999999999999999999876543
No 251
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.78 E-value=2.8e-18 Score=162.95 Aligned_cols=145 Identities=27% Similarity=0.422 Sum_probs=98.3
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCcee--------e------cCCCCceeeeEEEEEEE-----cCeEEEEEecCCCcccc
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVL--------V------GPEAGLTRDSVRVHFEY-----QGRTVYLVDTAGWLQRE 386 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~--------~------~~~~gtT~~~~~~~~~~-----~~~~~~liDTpG~~~~~ 386 (607)
+|+++|++|||||||+++|++..... . ....|+|.+.....+.+ .+..+.||||||+.+..
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 58999999999999999999743211 1 12335666654444444 34567899999975431
Q ss_pred cccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHH
Q 007334 387 KEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQE 456 (607)
Q Consensus 387 ~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 456 (607)
..+..+++.+|++|+|+|++++ .....++|+++|+||+|+.+... . ...+ +
T Consensus 82 ----------~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~-~----~~~~----~ 142 (179)
T cd01890 82 ----------YEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADP-E----RVKQ----Q 142 (179)
T ss_pred ----------HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCCH-H----HHHH----H
Confidence 2345678899999999999874 12246899999999999865321 1 1111 2
Q ss_pred HHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHH
Q 007334 457 IQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 457 ~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
+.+.+. ....+++++||++|.|++++++.+.+.
T Consensus 143 ~~~~~~-~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 175 (179)
T cd01890 143 IEDVLG-LDPSEAILVSAKTGLGVEDLLEAIVER 175 (179)
T ss_pred HHHHhC-CCcccEEEeeccCCCCHHHHHHHHHhh
Confidence 222211 112358999999999999999988764
No 252
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.78 E-value=1.1e-18 Score=162.89 Aligned_cols=144 Identities=20% Similarity=0.186 Sum_probs=96.2
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCcee-ecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVL-VGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~-~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
+||+++|++|||||||+|+|++..... ..+..|.+.. ...+.+++ ..+.||||||..+. . .....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~v~~~~~~~~~~i~D~~G~~~~---------~-~~~~~ 69 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFL--TQTVNLDDTTVKFEIWDTAGQERY---------R-SLAPM 69 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEE--EEEEEECCEEEEEEEEeCCchHHH---------H-HHHHH
Confidence 689999999999999999999875432 2333333332 23344444 56789999995322 1 11234
Q ss_pred HHhhccEEEEEeccchhh-----------H--H-hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEVR-----------A--V-EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~~-----------~--~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
+++.+|++++|+|+++.. . . ..+.|+++++||+|+....... .+... .+.. ..+.
T Consensus 70 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~--~~~~~-----~~~~----~~~~ 138 (163)
T cd01860 70 YYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVS--TEEAQ-----EYAD----ENGL 138 (163)
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCC--HHHHH-----HHHH----HcCC
Confidence 677899999999998750 0 1 1357899999999987432211 11111 1111 1246
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+++++||++|.|+.++|+.+.+.+
T Consensus 139 ~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 139 LFFETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 899999999999999999988753
No 253
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.78 E-value=2.3e-18 Score=161.10 Aligned_cols=146 Identities=23% Similarity=0.236 Sum_probs=97.6
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCC-CceeeeEEEEEEEc---CeEEEEEecCCCcccccccCcchhHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEA-GLTRDSVRVHFEYQ---GRTVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~-gtT~~~~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
+||+++|.+|||||||+++|.+........+. ++..+.....+.++ ...+.+|||||.... . ....
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~---------~-~~~~ 70 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELY---------S-DMVS 70 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHH---------H-HHHH
Confidence 48999999999999999999854222233333 33345444444442 257889999995322 1 1234
Q ss_pred HHHhhccEEEEEeccchhh-----------H--HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEVR-----------A--VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~-----------~--~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
.++..+|++++|+|.++.. . ...+.|+++|+||+|+.+........ . ..+ ....+.
T Consensus 71 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~---~----~~~----~~~~~~ 139 (164)
T cd04101 71 NYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQ---A----QAF----AQANQL 139 (164)
T ss_pred HHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHH---H----HHH----HHHcCC
Confidence 5778899999999998751 0 11368999999999997543221100 0 011 111256
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+++++||++|.|++++|+.+.+.+
T Consensus 140 ~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 140 KFFKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred eEEEEeCCCCCChHHHHHHHHHHh
Confidence 899999999999999999988753
No 254
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.78 E-value=1.4e-18 Score=163.36 Aligned_cols=144 Identities=15% Similarity=0.108 Sum_probs=95.1
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEc--CeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQ--GRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||+++++.... .....+....+.....+..+ ...+.+|||||..+... ....+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----------~~~~~ 69 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEF-EKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGG----------LRDGY 69 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhcc----------ccHHH
Confidence 4899999999999999999985432 11112222223222333333 34678999999754321 11235
Q ss_pred HhhccEEEEEeccchhh-------------HHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCE
Q 007334 403 LMRAHVVALVLDAEEVR-------------AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPV 469 (607)
Q Consensus 403 i~~ad~~llViD~~~~~-------------~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (607)
+..+|++|+|+|+++.. ....++|+++|+||+|+.......+ . .++. .....++
T Consensus 70 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~~~---~------~~~~----~~~~~~~ 136 (166)
T cd00877 70 YIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKAK---Q------ITFH----RKKNLQY 136 (166)
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCCHH---H------HHHH----HHcCCEE
Confidence 66899999999999861 1112799999999999974321110 0 0111 1235689
Q ss_pred EEcccCCCCCHHHHHHHHHHHHH
Q 007334 470 VFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 470 v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
+++||++|.|++++|+.+.+.+.
T Consensus 137 ~e~Sa~~~~~v~~~f~~l~~~~~ 159 (166)
T cd00877 137 YEISAKSNYNFEKPFLWLARKLL 159 (166)
T ss_pred EEEeCCCCCChHHHHHHHHHHHH
Confidence 99999999999999999987653
No 255
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.78 E-value=1.7e-18 Score=165.82 Aligned_cols=150 Identities=17% Similarity=0.149 Sum_probs=98.1
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEc-Ce--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQ-GR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~-~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
+||+++|.+|||||||+++|++.. +. ..+..++.+.+...+... +. .+.||||||..+. ... ...
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~-~~-~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~---------~~~-~~~ 68 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGK-FP-EEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEY---------DRL-RPL 68 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCc-CC-CCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhH---------HHH-HHH
Confidence 489999999999999999999764 22 333334333333344443 33 6789999995432 111 223
Q ss_pred HHhhccEEEEEeccchhh--------H------HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEVR--------A------VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~~--------~------~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
+++.||++++|+|+++.. . ...+.|+|+|+||+|+........ .+..+..+.++...+.
T Consensus 69 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~-------~v~~~~~~~~~~~~~~ 141 (187)
T cd04132 69 SYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDR-------KVTPAQAESVAKKQGA 141 (187)
T ss_pred hCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccC-------CcCHHHHHHHHHHcCC
Confidence 567899999999998750 1 124689999999999975421100 0101111111112244
Q ss_pred -CEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 468 -PVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 468 -~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
+++++||++|.|++++|..+.+.+..
T Consensus 142 ~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 168 (187)
T cd04132 142 FAYLECSAKTMENVEEVFDTAIEEALK 168 (187)
T ss_pred cEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence 89999999999999999999877643
No 256
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.78 E-value=1.9e-18 Score=162.72 Aligned_cols=145 Identities=19% Similarity=0.193 Sum_probs=98.8
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.+||+++|.+|||||||++++++.. ......+..+.+.....+.+++. .+.||||||..+. .. ....
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~---------~~-~~~~ 73 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYVTNK-FDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERF---------RS-LRTP 73 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCC-CCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHH---------HH-hHHH
Confidence 4799999999999999999999653 33333444455555555566655 5678999995332 11 2235
Q ss_pred HHhhccEEEEEeccchh-----------hHH-------hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCC
Q 007334 402 NLMRAHVVALVLDAEEV-----------RAV-------EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQ 463 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~-----------~~~-------~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (607)
+++.+|++++|+|.++. ... ..+.|+++|+||+|+.+.....+.... +.+ .
T Consensus 74 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~--------~~~---~ 142 (170)
T cd04116 74 FYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQA--------WCR---E 142 (170)
T ss_pred HhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHH--------HHH---H
Confidence 67889999999998865 000 135799999999998643211111111 111 1
Q ss_pred CCCCCEEEcccCCCCCHHHHHHHHHHH
Q 007334 464 VTGIPVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 464 ~~~~~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
....+++++||++|.|+.++|+.+++.
T Consensus 143 ~~~~~~~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 143 NGDYPYFETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhh
Confidence 223589999999999999999988753
No 257
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.78 E-value=3e-18 Score=168.66 Aligned_cols=156 Identities=19% Similarity=0.195 Sum_probs=107.1
Q ss_pred CEEEEecCCCCchhHHHHHhhcccee-eeccCCCCceeeeeEEEEeee--CCeeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREA-LVYNTPDDHVTRDIREGLAKL--GDLRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~-~v~~~~~~~~T~~~~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
.+|+++|.+|||||||++++++.... .....++ ..+.....+.+ ....+.+|||||++ .+. .
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~---~~~~~~~~i~~~~~~~~l~i~Dt~G~~----------~~~--~ 65 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASG---DDDTYERTVSVDGEESTLVVIDHWEQE----------MWT--E 65 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCc---cccceEEEEEECCEEEEEEEEeCCCcc----------hHH--H
Confidence 37999999999999999999866542 1111111 11333333333 44679999999987 111 1
Q ss_pred HHHhh-ccCEEEEEEecCCCCCHhH-HHHHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEee
Q 007334 198 ANVLA-KTQFAIFMIDVRSGLHPLD-LEVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAIS 273 (607)
Q Consensus 198 ~~~~~-~ad~vl~VvD~s~~~~~~~-~~~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iS 273 (607)
..++. .+|++++|+|++++.+... .++...+... ..+.|+|+|+||+|+...+.+..++........+. +++++|
T Consensus 66 ~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~-~~~e~S 144 (221)
T cd04148 66 DSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDC-KFIETS 144 (221)
T ss_pred hHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCC-eEEEec
Confidence 12344 8999999999998766654 2344444443 24789999999999976654443433344444555 689999
Q ss_pred cCCCCChHHHHHHhccchH
Q 007334 274 AETGLGMTELYEALRPSVE 292 (607)
Q Consensus 274 A~~g~gi~eL~~~i~~~l~ 292 (607)
|++|.|++++++.|...+.
T Consensus 145 A~~~~gv~~l~~~l~~~~~ 163 (221)
T cd04148 145 AGLQHNVDELLEGIVRQIR 163 (221)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999987664
No 258
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=7e-19 Score=163.02 Aligned_cols=148 Identities=20% Similarity=0.243 Sum_probs=117.0
Q ss_pred cCCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHH
Q 007334 322 KLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQS 399 (607)
Q Consensus 322 ~~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~ 399 (607)
+..+||+++|.++||||-|+.+++.. .+.....+.+..+.....+.++++ +.+||||||+.+.. .-+
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrn-EF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyr----------Ait 80 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRN-EFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYR----------AIT 80 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhccc-ccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhc----------ccc
Confidence 34689999999999999999999954 466667777778888777888887 55799999975552 223
Q ss_pred HHHHhhccEEEEEeccchh--------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCC
Q 007334 400 RKNLMRAHVVALVLDAEEV--------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVT 465 (607)
Q Consensus 400 ~~~i~~ad~~llViD~~~~--------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (607)
-.++++|.++++|||.+.. .....++++++|+||+||.+. +.++.+..+.++...
T Consensus 81 SaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~l-----------raV~te~~k~~Ae~~ 149 (222)
T KOG0087|consen 81 SAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHL-----------RAVPTEDGKAFAEKE 149 (222)
T ss_pred chhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhc-----------cccchhhhHhHHHhc
Confidence 4678899999999999875 122368999999999999764 334455556666666
Q ss_pred CCCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 466 GIPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 466 ~~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+..++++||+.+.|+++.|+.++..+
T Consensus 150 ~l~f~EtSAl~~tNVe~aF~~~l~~I 175 (222)
T KOG0087|consen 150 GLFFLETSALDATNVEKAFERVLTEI 175 (222)
T ss_pred CceEEEecccccccHHHHHHHHHHHH
Confidence 88999999999999999998877654
No 259
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.78 E-value=4.4e-18 Score=158.47 Aligned_cols=148 Identities=14% Similarity=0.070 Sum_probs=103.0
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
+|+++|.+|||||||+++++...+.. ..+ ++.......+.+++ ..+.+|||+|+.. ..
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~~--~~~---~~~~~~~~~i~~~~~~~~l~i~D~~g~~~---------------~~ 61 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQ--LES---PEGGRFKKEVLVDGQSHLLLIRDEGGAPD---------------AQ 61 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCC--CCC---CCccceEEEEEECCEEEEEEEEECCCCCc---------------hh
Confidence 69999999999999999998765421 111 11222234455566 5689999999971 12
Q ss_pred HhhccCEEEEEEecCCCCCHhH-HHHHHHHHhhC--CCCcEEEEecCCCccc--CCcCcHHHHHHHHHhcCCCCcEEeec
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLD-LEVGKWLRKHA--PQIKPIVAMNKCESLH--NGTGSLAGAAAESLMLGFGDPIAISA 274 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~-~~~~~~l~~~~--~~~p~ilV~NK~D~~~--~~~~~~~~~~~~~~~~~~~~~i~iSA 274 (607)
++..+|++++|+|+++..+.+. ..+...+.... ++.|+++|+||+|+.. .+.+...+........+...++++||
T Consensus 62 ~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA 141 (158)
T cd04103 62 FASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCA 141 (158)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEec
Confidence 4578999999999999888877 33444444332 4689999999999853 23333333333333443237899999
Q ss_pred CCCCChHHHHHHhcc
Q 007334 275 ETGLGMTELYEALRP 289 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~ 289 (607)
++|.|++++|+.+.+
T Consensus 142 k~~~~i~~~f~~~~~ 156 (158)
T cd04103 142 TYGLNVERVFQEAAQ 156 (158)
T ss_pred CCCCCHHHHHHHHHh
Confidence 999999999998864
No 260
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.78 E-value=1.2e-18 Score=163.38 Aligned_cols=144 Identities=24% Similarity=0.308 Sum_probs=97.8
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
+|+++|.+|||||||+++++... ....+++++.+.....+.+++. .+.+|||||..... ......++
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~~~~ 69 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKR--FIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQAD---------TEQLERSI 69 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCc--cccccCCChHHhceEEEEECCEEEEEEEEECCCCcccc---------cchHHHHH
Confidence 58999999999999999998643 2345555554444445556665 56799999965310 01234567
Q ss_pred hhccEEEEEeccchhh-------------HH---hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 404 MRAHVVALVLDAEEVR-------------AV---EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 404 ~~ad~~llViD~~~~~-------------~~---~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
+.+|++|+|+|+++.. .. ..++|+++|+||+|+........ +....++...+.
T Consensus 70 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~-----------~~~~~~~~~~~~ 138 (165)
T cd04146 70 RWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVST-----------EEGEKLASELGC 138 (165)
T ss_pred HhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCH-----------HHHHHHHHHcCC
Confidence 8899999999998761 11 23799999999999864322110 011111112246
Q ss_pred CEEEcccCCC-CCHHHHHHHHHHHH
Q 007334 468 PVVFTSALEG-RGRIAVMHQVIDTY 491 (607)
Q Consensus 468 ~~v~iSA~~g-~gv~~l~~~i~~~~ 491 (607)
+++++||++| .|++++|..+.+.+
T Consensus 139 ~~~e~Sa~~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 139 LFFEVSAAEDYDGVHSVFHELCREV 163 (165)
T ss_pred EEEEeCCCCCchhHHHHHHHHHHHH
Confidence 8999999999 49999999988654
No 261
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.78 E-value=2.6e-18 Score=159.77 Aligned_cols=142 Identities=19% Similarity=0.205 Sum_probs=99.3
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhh
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMR 405 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ 405 (607)
||+++|.+|||||||++++++.......++.+.+. ..+.+.+..+.+|||||..... .....++..
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~----~~~~~~~~~~~i~D~~G~~~~~----------~~~~~~~~~ 66 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNV----ETVEYKNVSFTVWDVGGQDKIR----------PLWKHYYEN 66 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcce----EEEEECCEEEEEEECCCChhhH----------HHHHHHhcc
Confidence 68999999999999999999876333333334333 3455678899999999964331 123456778
Q ss_pred ccEEEEEeccchh-----------hH----HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEE
Q 007334 406 AHVVALVLDAEEV-----------RA----VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVV 470 (607)
Q Consensus 406 ad~~llViD~~~~-----------~~----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 470 (607)
+|++++|+|++++ .. ...+.|+++|+||+|+....... .+ ...+..........+++
T Consensus 67 ~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~----~~----~~~~~~~~~~~~~~~~~ 138 (158)
T cd00878 67 TNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVS----EL----IEKLGLEKILGRRWHIQ 138 (158)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHH----HH----HHhhChhhccCCcEEEE
Confidence 9999999999875 00 12478999999999997653211 11 12222211223456899
Q ss_pred EcccCCCCCHHHHHHHHHH
Q 007334 471 FTSALEGRGRIAVMHQVID 489 (607)
Q Consensus 471 ~iSA~~g~gv~~l~~~i~~ 489 (607)
++||++|.|++++|+.|..
T Consensus 139 ~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 139 PCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred EeeCCCCCCHHHHHHHHhh
Confidence 9999999999999998764
No 262
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.78 E-value=2.4e-18 Score=166.69 Aligned_cols=147 Identities=20% Similarity=0.152 Sum_probs=100.9
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.++|+++|.+|||||||+++|++.. +.....+..+.+.....+.+++. .+.||||||..... .....
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~----------~~~~~ 74 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNT-FSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFR----------TITST 74 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC-CCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHH----------HHHHH
Confidence 4799999999999999999999764 22222333344444445555554 67799999964321 12345
Q ss_pred HHhhccEEEEEeccchhh-------------HHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEVR-------------AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~~-------------~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
+++.+|++++|+|+++.. ......|+++|+||+|+.+...... +.. ..+.+ ..+.+
T Consensus 75 ~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~--~~~-----~~~~~----~~~~~ 143 (199)
T cd04110 75 YYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVET--EDA-----YKFAG----QMGIS 143 (199)
T ss_pred HhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCH--HHH-----HHHHH----HcCCE
Confidence 778899999999998761 1123589999999999976432211 110 01111 12468
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
++++||++|.|++++|+.+...+.
T Consensus 144 ~~e~Sa~~~~gi~~lf~~l~~~~~ 167 (199)
T cd04110 144 LFETSAKENINVEEMFNCITELVL 167 (199)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHH
Confidence 999999999999999999987653
No 263
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.78 E-value=4.6e-18 Score=161.18 Aligned_cols=145 Identities=17% Similarity=0.192 Sum_probs=97.5
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
.+||+++|.+|||||||++++..... ....|++..+. ..+.+.+..+.+|||||..+.. .....++
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~--~~~~~t~~~~~--~~~~~~~~~l~l~D~~G~~~~~----------~~~~~~~ 78 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGES--VTTIPTIGFNV--ETVTYKNISFTVWDVGGQDKIR----------PLWRHYY 78 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCC--CCcCCccccce--EEEEECCEEEEEEECCCChhhH----------HHHHHHh
Confidence 47999999999999999999974432 22334333333 2345677899999999964331 1234567
Q ss_pred hhccEEEEEeccchh-----------hHH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 404 MRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 404 ~~ad~~llViD~~~~-----------~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
++||++|+|+|+++. ... ..+.|++||+||+|+.+.....+ +.+ .+.........+.
T Consensus 79 ~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~----i~~----~~~~~~~~~~~~~ 150 (175)
T smart00177 79 TNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAE----ITE----KLGLHSIRDRNWY 150 (175)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHH----HHH----HhCccccCCCcEE
Confidence 899999999999875 111 13589999999999975432111 111 1111111112345
Q ss_pred EEEcccCCCCCHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
++++||++|.|++++|++|.+.
T Consensus 151 ~~~~Sa~~g~gv~e~~~~l~~~ 172 (175)
T smart00177 151 IQPTCATSGDGLYEGLTWLSNN 172 (175)
T ss_pred EEEeeCCCCCCHHHHHHHHHHH
Confidence 7789999999999999988765
No 264
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.78 E-value=4.3e-18 Score=163.63 Aligned_cols=144 Identities=22% Similarity=0.258 Sum_probs=102.8
Q ss_pred ceEEEEcCCCCchhHHHHHhhcC------Cce---------eecCCCCceeeeEEEEEEEcCeEEEEEecCCCccccccc
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQE------DRV---------LVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEK 389 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~------~~~---------~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~ 389 (607)
++|+++|++|+|||||+++|++. ... ......|+|.+.....+++++.++.++||||+.++
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~---- 78 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY---- 78 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHH----
Confidence 68999999999999999999864 111 11125689999888888888899999999997433
Q ss_pred CcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCc-EEEEEeCccCCCCcCchHHHHHHHHhcHHHHH
Q 007334 390 GPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRG-LVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQ 458 (607)
Q Consensus 390 ~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p-~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 458 (607)
...+..++..+|++++|+|+..+ .....++| +|+|+||+|+.... +.++.+.+.+...+.
T Consensus 79 ------~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~---~~~~~~~~~i~~~l~ 149 (195)
T cd01884 79 ------IKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDE---ELLELVEMEVRELLS 149 (195)
T ss_pred ------HHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcH---HHHHHHHHHHHHHHH
Confidence 23345677889999999999875 23346777 78999999997432 223333333333333
Q ss_pred hhCCCCCCCCEEEcccCCCCCHH
Q 007334 459 TVIPQVTGIPVVFTSALEGRGRI 481 (607)
Q Consensus 459 ~~~~~~~~~~~v~iSA~~g~gv~ 481 (607)
+.-....++|++++||++|.|+.
T Consensus 150 ~~g~~~~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 150 KYGFDGDNTPIVRGSALKALEGD 172 (195)
T ss_pred HhcccccCCeEEEeeCccccCCC
Confidence 22122346899999999999864
No 265
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.78 E-value=2.3e-18 Score=162.43 Aligned_cols=146 Identities=21% Similarity=0.239 Sum_probs=99.9
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
++|+++|++|||||||++++++.. ......+..+.+.....+.+++ ..+.||||||..+. .......+
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~---------~~~~~~~~ 72 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGR-FPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERF---------RKSMVQHY 72 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC-CCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHH---------HHhhHHHh
Confidence 689999999999999999999754 2222334444455555566666 46789999995332 11122356
Q ss_pred HhhccEEEEEeccchhh----------H-----HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEVR----------A-----VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~~----------~-----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
++.+|++++|+|++++. . ...++|+++|+||+|+........ +..+.++.....
T Consensus 73 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~-----------~~~~~~~~~~~~ 141 (170)
T cd04115 73 YRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPT-----------DLAQRFADAHSM 141 (170)
T ss_pred hcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCH-----------HHHHHHHHHcCC
Confidence 77899999999998760 1 113689999999999875432211 111111112347
Q ss_pred CEEEcccCC---CCCHHHHHHHHHHHH
Q 007334 468 PVVFTSALE---GRGRIAVMHQVIDTY 491 (607)
Q Consensus 468 ~~v~iSA~~---g~gv~~l~~~i~~~~ 491 (607)
+++++||++ +.|+.++|..+.+.+
T Consensus 142 ~~~e~Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 142 PLFETSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred cEEEEeccCCcCCCCHHHHHHHHHHHh
Confidence 899999999 899999999887654
No 266
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.78 E-value=4.8e-18 Score=161.96 Aligned_cols=147 Identities=17% Similarity=0.176 Sum_probs=98.7
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
.+||+++|.+|||||||++++....... ..|++..+. ..+++++..+.||||||..+. . .....++
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~~--~~pt~g~~~--~~~~~~~~~~~i~D~~Gq~~~---------~-~~~~~~~ 82 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLGEIVT--TIPTIGFNV--ETVEYKNISFTVWDVGGQDKI---------R-PLWRHYF 82 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCcc--ccCCcceeE--EEEEECCEEEEEEECCCCHHH---------H-HHHHHHh
Confidence 4799999999999999999998654322 233333332 245677889999999995332 1 1234577
Q ss_pred hhccEEEEEeccchhh-----------H----HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 404 MRAHVVALVLDAEEVR-----------A----VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 404 ~~ad~~llViD~~~~~-----------~----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
++||++|+|+|+++.. . ...+.|++||+||+|+.+.... +.+.+ .++-.........
T Consensus 83 ~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~----~~~~~----~l~l~~~~~~~~~ 154 (181)
T PLN00223 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA----AEITD----KLGLHSLRQRHWY 154 (181)
T ss_pred ccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCH----HHHHH----HhCccccCCCceE
Confidence 8999999999999751 1 1136899999999999765321 11111 1110000011234
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
++++||++|+|++++|++|.+.+.
T Consensus 155 ~~~~Sa~~g~gv~e~~~~l~~~~~ 178 (181)
T PLN00223 155 IQSTCATSGEGLYEGLDWLSNNIA 178 (181)
T ss_pred EEeccCCCCCCHHHHHHHHHHHHh
Confidence 668999999999999999977654
No 267
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.78 E-value=6.1e-18 Score=160.90 Aligned_cols=158 Identities=14% Similarity=0.121 Sum_probs=107.7
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+|+|.+|||||||++++++.... ..... ++.+.........+ ..+.+|||||+. ++.....
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~~~~~ 67 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFV--ESYYP--TIENTFSKIIRYKGQDYHLEIVDTAGQD----------EYSILPQ 67 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc--cccCc--chhhhEEEEEEECCEEEEEEEEECCChH----------hhHHHHH
Confidence 47999999999999999999987642 22222 33322233334443 467899999987 3444445
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHH-HHHHH-Hhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLE-VGKWL-RKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l-~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
.++..+|++++|+|+++..+.+... +...+ +.. ..+.|+++|+||+|+...+..............+. +++++||+
T Consensus 68 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 146 (180)
T cd04137 68 KYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGA-AFLESSAR 146 (180)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCC-eEEEEeCC
Confidence 6788999999999999866554422 22222 222 23679999999999976443333222223334443 78999999
Q ss_pred CCCChHHHHHHhccchHH
Q 007334 276 TGLGMTELYEALRPSVED 293 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~~ 293 (607)
+|.|+.++++++.+.+..
T Consensus 147 ~~~gv~~l~~~l~~~~~~ 164 (180)
T cd04137 147 ENENVEEAFELLIEEIEK 164 (180)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999877654
No 268
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.78 E-value=2.8e-18 Score=162.30 Aligned_cols=155 Identities=14% Similarity=0.130 Sum_probs=104.9
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.+|||||||++++.+.... ..... +..+.....+.+.+ ..+.+|||||+. ++.....
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~ 67 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFP--EVYVP--TVFENYVADIEVDGKQVELALWDTAGQE----------DYDRLRP 67 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC--CCCCC--ccccceEEEEEECCEEEEEEEEeCCCch----------hhhhccc
Confidence 57999999999999999999987642 11221 22233233444444 468999999987 3333334
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHH--HHHHHHhhCCCCcEEEEecCCCcccCCc------------CcHHHHHHHHHhc
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLE--VGKWLRKHAPQIKPIVAMNKCESLHNGT------------GSLAGAAAESLML 264 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~--~~~~l~~~~~~~p~ilV~NK~D~~~~~~------------~~~~~~~~~~~~~ 264 (607)
.++..+|++++|+|+++..+..+.. +...++....+.|+++|+||+|+..... .............
T Consensus 68 ~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~ 147 (175)
T cd01870 68 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKI 147 (175)
T ss_pred cccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHc
Confidence 5678999999999999765554421 3333444345789999999999865321 1112223333344
Q ss_pred CCCCcEEeecCCCCChHHHHHHhcc
Q 007334 265 GFGDPIAISAETGLGMTELYEALRP 289 (607)
Q Consensus 265 ~~~~~i~iSA~~g~gi~eL~~~i~~ 289 (607)
+..+++++||++|.|++++++.|.+
T Consensus 148 ~~~~~~~~Sa~~~~~v~~lf~~l~~ 172 (175)
T cd01870 148 GAFGYMECSAKTKEGVREVFEMATR 172 (175)
T ss_pred CCcEEEEeccccCcCHHHHHHHHHH
Confidence 5447899999999999999999874
No 269
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.78 E-value=3.4e-18 Score=159.42 Aligned_cols=142 Identities=18% Similarity=0.194 Sum_probs=96.3
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCcee-ecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVL-VGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~-~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
+||+++|.+|||||||+|+|++..... ..+..+.+... ..+.+++ ..+.+|||||..... .....
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~D~~g~~~~~----------~~~~~ 68 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKV--KTLTVDGKKVKLAIWDTAGQERFR----------TLTSS 68 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEE--EEEEECCEEEEEEEEECCCchhhh----------hhhHH
Confidence 489999999999999999999764322 33344443332 2334444 467899999964331 11235
Q ss_pred HHhhccEEEEEeccchhh-------------H--HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEVR-------------A--VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~~-------------~--~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
.++.+|++++|+|+++.. . ...+.|+++|+||+|+.......+.... +.+ ..+
T Consensus 69 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~--------~~~----~~~ 136 (161)
T cd01863 69 YYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLK--------FAR----KHN 136 (161)
T ss_pred HhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHH--------HHH----HcC
Confidence 667899999999998750 0 1246899999999999743222111111 111 125
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
++++++||++|.|++++++.+.+.
T Consensus 137 ~~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 137 MLFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred CEEEEEecCCCCCHHHHHHHHHHh
Confidence 789999999999999999988753
No 270
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.78 E-value=7.6e-18 Score=156.91 Aligned_cols=154 Identities=27% Similarity=0.382 Sum_probs=110.7
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
..+|+++|.+|+|||||+|+|++.......+.++++++.....+...+..+.+|||||+....... ...........+
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~--~~~~~~~~~~~~ 80 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKL--GERMVKAAWSAL 80 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHH--HHHHHHHHHHHH
Confidence 368999999999999999999998767777788888887776666677889999999976542111 111122345667
Q ss_pred hhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcc
Q 007334 404 MRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTS 473 (607)
Q Consensus 404 ~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iS 473 (607)
..+|++++|+|++++ .....+.|+++|+||+|+..... ...... ..+. ......+++++|
T Consensus 81 ~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~---~~~~~~----~~~~---~~~~~~~~~~~s 150 (168)
T cd04163 81 KDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDKE---DLLPLL----EKLK---ELGPFAEIFPIS 150 (168)
T ss_pred HhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccccHH---HHHHHH----HHHH---hccCCCceEEEE
Confidence 889999999999875 12234689999999999974311 111111 1111 112246899999
Q ss_pred cCCCCCHHHHHHHHHH
Q 007334 474 ALEGRGRIAVMHQVID 489 (607)
Q Consensus 474 A~~g~gv~~l~~~i~~ 489 (607)
|+++.|++++++.|.+
T Consensus 151 ~~~~~~~~~l~~~l~~ 166 (168)
T cd04163 151 ALKGENVDELLEEIVK 166 (168)
T ss_pred eccCCChHHHHHHHHh
Confidence 9999999999988865
No 271
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.78 E-value=1.4e-18 Score=162.92 Aligned_cols=149 Identities=15% Similarity=0.117 Sum_probs=100.5
Q ss_pred EEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHhh
Q 007334 123 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVLA 202 (607)
Q Consensus 123 V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 202 (607)
|+++|.+|||||||++++++.... .... .|.......+...+.++.+|||||.. ++...+..+++
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~--~~~~---pt~g~~~~~i~~~~~~l~i~Dt~G~~----------~~~~~~~~~~~ 66 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSL--ESVV---PTTGFNSVAIPTQDAIMELLEIGGSQ----------NLRKYWKRYLS 66 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCc--cccc---ccCCcceEEEeeCCeEEEEEECCCCc----------chhHHHHHHHh
Confidence 799999999999999999986542 1111 11112223455678899999999987 44555667899
Q ss_pred ccCEEEEEEecCCCCCHhHHHHHHHHHhh---CCCCcEEEEecCCCcccCCcCcHHH----HHHHHHhcCCCCcEEeecC
Q 007334 203 KTQFAIFMIDVRSGLHPLDLEVGKWLRKH---APQIKPIVAMNKCESLHNGTGSLAG----AAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 203 ~ad~vl~VvD~s~~~~~~~~~~~~~l~~~---~~~~p~ilV~NK~D~~~~~~~~~~~----~~~~~~~~~~~~~i~iSA~ 275 (607)
.+|++++|+|++++.+... ...|+.+. .+++|+++|+||+|+.......... ........++ .++++||+
T Consensus 67 ~ad~ii~V~D~t~~~s~~~--~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~Sa~ 143 (164)
T cd04162 67 GSQGLIFVVDSADSERLPL--ARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRW-ILQGTSLD 143 (164)
T ss_pred hCCEEEEEEECCCHHHHHH--HHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCce-EEEEeeec
Confidence 9999999999988654433 22233222 3579999999999987654321100 0111122233 56888888
Q ss_pred C------CCChHHHHHHhcc
Q 007334 276 T------GLGMTELYEALRP 289 (607)
Q Consensus 276 ~------g~gi~eL~~~i~~ 289 (607)
+ ++|++++|+.+..
T Consensus 144 ~~~s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 144 DDGSPSRMEAVKDLLSQLIN 163 (164)
T ss_pred CCCChhHHHHHHHHHHHHhc
Confidence 8 9999999998753
No 272
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.77 E-value=3.1e-18 Score=159.52 Aligned_cols=142 Identities=20% Similarity=0.229 Sum_probs=94.7
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEE-cCeEEEEEecCCCcccccccCcchhHHHHHHHHHh
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEY-QGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLM 404 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~ 404 (607)
+|+++|.+|||||||+++|++.......+..+.+. ..+.. ....+.+|||||..... .....++.
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~----~~~~~~~~~~l~i~D~~G~~~~~----------~~~~~~~~ 66 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNV----EMLQLEKHLSLTVWDVGGQEKMR----------TVWKCYLE 66 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcce----EEEEeCCceEEEEEECCCCHhHH----------HHHHHHhc
Confidence 58999999999999999999876443333333222 22333 34588999999964321 11235677
Q ss_pred hccEEEEEeccchh-----------hH----HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHH-hhCCCCCCCC
Q 007334 405 RAHVVALVLDAEEV-----------RA----VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQ-TVIPQVTGIP 468 (607)
Q Consensus 405 ~ad~~llViD~~~~-----------~~----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 468 (607)
.+|++++|+|+++. .. ...+.|+++|+||+|+....... .+. ..+. +.+....+.+
T Consensus 67 ~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~----~i~----~~~~~~~~~~~~~~~ 138 (160)
T cd04156 67 NTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAE----EIT----RRFKLKKYCSDRDWY 138 (160)
T ss_pred cCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHH----HHH----HHcCCcccCCCCcEE
Confidence 89999999999875 11 11478999999999986532211 111 1111 1122223457
Q ss_pred EEEcccCCCCCHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVID 489 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~ 489 (607)
++++||++|.|++++|+.|.+
T Consensus 139 ~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 139 VQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred EEecccccCCChHHHHHHHhc
Confidence 999999999999999998753
No 273
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.77 E-value=6e-18 Score=159.46 Aligned_cols=143 Identities=17% Similarity=0.173 Sum_probs=96.1
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhh
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMR 405 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ 405 (607)
||+++|.+|||||||+++|.+... ....| |.......+++++..+.+|||||..+.. .....+++.
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~--~~~~~--T~~~~~~~~~~~~~~i~l~Dt~G~~~~~----------~~~~~~~~~ 66 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF--MQPIP--TIGFNVETVEYKNLKFTIWDVGGKHKLR----------PLWKHYYLN 66 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC--CCcCC--cCceeEEEEEECCEEEEEEECCCChhcc----------hHHHHHhcc
Confidence 589999999999999999997632 22233 3322233567788899999999964331 123456788
Q ss_pred ccEEEEEeccchh-----------hHH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCC--CCCCCC
Q 007334 406 AHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIP--QVTGIP 468 (607)
Q Consensus 406 ad~~llViD~~~~-----------~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 468 (607)
+|++++|+|+++. ... ..+.|+++|+||+|+.+..... .+. +...... .....+
T Consensus 67 ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~----~~~-----~~~~~~~~~~~~~~~ 137 (169)
T cd04158 67 TQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVE----EMT-----ELLSLHKLCCGRSWY 137 (169)
T ss_pred CCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHH----HHH-----HHhCCccccCCCcEE
Confidence 9999999999875 111 1347999999999996432211 111 0001000 011236
Q ss_pred EEEcccCCCCCHHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
++++||++|.|++++|+++.+.+
T Consensus 138 ~~~~Sa~~g~gv~~~f~~l~~~~ 160 (169)
T cd04158 138 IQGCDARSGMGLYEGLDWLSRQL 160 (169)
T ss_pred EEeCcCCCCCCHHHHHHHHHHHH
Confidence 88999999999999999987654
No 274
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.77 E-value=3.1e-18 Score=161.17 Aligned_cols=145 Identities=23% Similarity=0.242 Sum_probs=99.6
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
++|+++|.||||||||++++++.. ....+..++.+.....+.+++. .+.+|||||+.++. .....+
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~~~ 69 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNV--FIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFT----------AMRELY 69 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccch----------hhhHHH
Confidence 689999999999999999999664 2333444554554455555554 66799999975442 122345
Q ss_pred HhhccEEEEEeccchh-----------hH----HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV-----------RA----VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~-----------~~----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
+..+|++++|+|+++. .. ...++|+++++||+|+........ +.. ..+.+. ...+
T Consensus 70 ~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~--~~~-----~~~~~~---~~~~ 139 (168)
T cd04177 70 IKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSR--EDG-----VSLSQQ---WGNV 139 (168)
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCH--HHH-----HHHHHH---cCCc
Confidence 6789999999999875 01 124789999999999975432111 100 111111 1136
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+++++||++|.|++++|+++...+
T Consensus 140 ~~~~~SA~~~~~i~~~f~~i~~~~ 163 (168)
T cd04177 140 PFYETSARKRTNVDEVFIDLVRQI 163 (168)
T ss_pred eEEEeeCCCCCCHHHHHHHHHHHH
Confidence 899999999999999999987643
No 275
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.77 E-value=7.3e-18 Score=157.28 Aligned_cols=144 Identities=23% Similarity=0.275 Sum_probs=101.0
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||++++++.. .+..+.+++.+........++. .+.+|||||..+.. .....+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----------~~~~~~ 68 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDE--FVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYA----------AIRDNY 68 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC--CccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhh----------HHHHHH
Confidence 489999999999999999999653 3345566666655555556554 67899999964331 123357
Q ss_pred HhhccEEEEEeccchh-----------hH--H--hcCCcEEEEEeCccCCCCcC-chHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV-----------RA--V--EEGRGLVVIVNKMDLLSGRQ-NSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 403 i~~ad~~llViD~~~~-----------~~--~--~~~~p~ivv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
++.+|++++|+|+++. .. . ..++|+++|+||+|+..... ....... ..+. .+
T Consensus 69 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~--------~~~~----~~ 136 (164)
T cd04139 69 HRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAAN--------LARQ----WG 136 (164)
T ss_pred hhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHH--------HHHH----hC
Confidence 7789999999998764 11 1 24799999999999976321 1111111 1111 24
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
.+++++||++|.|++++|+.+.+.+.
T Consensus 137 ~~~~~~Sa~~~~gi~~l~~~l~~~~~ 162 (164)
T cd04139 137 VPYVETSAKTRQNVEKAFYDLVREIR 162 (164)
T ss_pred CeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999876553
No 276
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.77 E-value=2.8e-18 Score=164.80 Aligned_cols=153 Identities=17% Similarity=0.164 Sum_probs=105.8
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
..+|+++|.+|||||||+|+|++....... .|.....+.+.+++..+.+|||||+. ++...+..
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~~~~~~------~T~~~~~~~i~~~~~~~~l~D~~G~~----------~~~~~~~~ 82 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDRLAQHV------PTLHPTSEELTIGNIKFKTFDLGGHE----------QARRLWKD 82 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCcccC------CccCcceEEEEECCEEEEEEECCCCH----------HHHHHHHH
Confidence 468999999999999999999987642211 23333445666778899999999987 44455667
Q ss_pred HhhccCEEEEEEecCCCCCHhH--HHHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhc------------
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLD--LEVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLML------------ 264 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~--~~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~------------ 264 (607)
++..+|++++|+|+++..+... ..+...++.. ..+.|+++|+||+|+... .........+...
T Consensus 83 ~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (190)
T cd00879 83 YFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGA--VSEEELRQALGLYGTTTGKGVSLKV 160 (190)
T ss_pred HhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCC--cCHHHHHHHhCcccccccccccccc
Confidence 8899999999999987644332 1222333211 246899999999998642 2222222222110
Q ss_pred --CC-CCcEEeecCCCCChHHHHHHhccc
Q 007334 265 --GF-GDPIAISAETGLGMTELYEALRPS 290 (607)
Q Consensus 265 --~~-~~~i~iSA~~g~gi~eL~~~i~~~ 290 (607)
.. .+++++||++|+|+++++++|.+.
T Consensus 161 ~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 161 SGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred cCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 11 146999999999999999998754
No 277
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.77 E-value=3.8e-18 Score=164.33 Aligned_cols=148 Identities=22% Similarity=0.301 Sum_probs=98.9
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceee-eEEEEEEEcCeE--EEEEecCCCcccccccCcchhHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRD-SVRVHFEYQGRT--VYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~-~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
+||+++|.+|||||||+++|++.. ....++.+|... .....+..++.. +.+|||||..+.. .. ...
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~---------~~-~~~ 69 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHR-FLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYE---------AM-SRI 69 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC-cCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhh---------hh-hHh
Confidence 489999999999999999999764 333344444433 233456666654 5599999964331 11 124
Q ss_pred HHhhccEEEEEeccchhh-------------HHhcCCcEEEEEeCccCCCCcCc-hHH-HHHHHHhcHHHHHhhCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEVR-------------AVEEGRGLVVIVNKMDLLSGRQN-SAL-YKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~~-------------~~~~~~p~ivv~NK~Dl~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~ 466 (607)
++..+|++++|+|+++.. ....+.|+++|+||+|+.+.... ... .+.+ ..+. ...+
T Consensus 70 ~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~-----~~~~----~~~~ 140 (193)
T cd04118 70 YYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDV-----QDFA----DEIK 140 (193)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHH-----HHHH----HHcC
Confidence 566899999999998751 01236899999999998653211 000 0111 0111 1225
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
.+++++||++|.|++++|+.+.+.+.
T Consensus 141 ~~~~~~Sa~~~~gv~~l~~~i~~~~~ 166 (193)
T cd04118 141 AQHFETSSKTGQNVDELFQKVAEDFV 166 (193)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999987664
No 278
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.77 E-value=6.5e-18 Score=158.48 Aligned_cols=150 Identities=19% Similarity=0.222 Sum_probs=102.9
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEc---CeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQ---GRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
.|+++|.+|||||||+|+|++.. ......+++|.+.....+..+ +..+.+|||||+... ... ...+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~---------~~~-~~~~ 70 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTN-VAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAF---------TNM-RARG 70 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcc-cccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHH---------HHH-HHHH
Confidence 48999999999999999999764 334455677777655555554 678999999996432 111 2345
Q ss_pred HhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhC-CCCCCCCEEE
Q 007334 403 LMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVI-PQVTGIPVVF 471 (607)
Q Consensus 403 i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~ 471 (607)
+..+|++++|+|++++ .....++|+++|+||+|+..... ..... .+........ ......++++
T Consensus 71 ~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~ 145 (168)
T cd01887 71 ASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANP-ERVKN----ELSELGLQGEDEWGGDVQIVP 145 (168)
T ss_pred HhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccccH-HHHHH----HHHHhhccccccccCcCcEEE
Confidence 6789999999999863 22346899999999999875321 11111 1111000000 1122468999
Q ss_pred cccCCCCCHHHHHHHHHHHH
Q 007334 472 TSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 472 iSA~~g~gv~~l~~~i~~~~ 491 (607)
+||++|.|+.++++.+.+..
T Consensus 146 ~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 146 TSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred eecccCCCHHHHHHHHHHhh
Confidence 99999999999999887754
No 279
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.77 E-value=7.7e-18 Score=164.94 Aligned_cols=156 Identities=8% Similarity=0.101 Sum_probs=109.9
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|++||.+|||||||++++++..+. ..... +..+.....+..++ ..+.||||+|++ .+.....
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~--~~y~p--Ti~~~~~~~~~~~~~~v~L~iwDt~G~e----------~~~~l~~ 67 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYP--GSYVP--TVFENYTASFEIDKRRIELNMWDTSGSS----------YYDNVRP 67 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--CccCC--ccccceEEEEEECCEEEEEEEEeCCCcH----------HHHHHhH
Confidence 37999999999999999999987642 22211 22222222333433 568899999997 4555566
Q ss_pred HHhhccCEEEEEEecCCCCCHhHH--HHHHHHHhhCCCCcEEEEecCCCcccCC------------cCcHHHHHHHHHhc
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHNG------------TGSLAGAAAESLML 264 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~D~~~~~------------~~~~~~~~~~~~~~ 264 (607)
.++..+|++|+|+|++++.+.... .+...++...++.|+|+|+||+|+.... .+..++....+...
T Consensus 68 ~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~ 147 (222)
T cd04173 68 LAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQV 147 (222)
T ss_pred HhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHc
Confidence 788999999999999998766653 2333344445689999999999986531 13334444555566
Q ss_pred CCCCcEEeecCCCCC-hHHHHHHhccc
Q 007334 265 GFGDPIAISAETGLG-MTELYEALRPS 290 (607)
Q Consensus 265 ~~~~~i~iSA~~g~g-i~eL~~~i~~~ 290 (607)
+...++++||+++.+ ++++|+.....
T Consensus 148 ~~~~y~E~SAk~~~~~V~~~F~~~~~~ 174 (222)
T cd04173 148 GAVSYVECSSRSSERSVRDVFHVATVA 174 (222)
T ss_pred CCCEEEEcCCCcCCcCHHHHHHHHHHH
Confidence 644789999999985 99999987654
No 280
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.77 E-value=2.8e-18 Score=170.86 Aligned_cols=152 Identities=24% Similarity=0.304 Sum_probs=109.4
Q ss_pred HHHHHHHHHhhccCEEEEEEecCCCC-CHhHHHHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCc
Q 007334 192 RTAGMTANVLAKTQFAIFMIDVRSGL-HPLDLEVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDP 269 (607)
Q Consensus 192 ~~~~~~~~~~~~ad~vl~VvD~s~~~-~~~~~~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~ 269 (607)
++...+..+++++|.+++|+|++++. +... +.+|+... ..++|+++|+||+|+....... .+....+...++ ++
T Consensus 25 R~~~L~r~~~~n~D~viiV~d~~~p~~s~~~--l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~~-~~~~~~~~~~g~-~v 100 (245)
T TIGR00157 25 RKNELTRPIVANIDQIVIVSSAVLPELSLNQ--LDRFLVVAEAQNIEPIIVLNKIDLLDDEDME-KEQLDIYRNIGY-QV 100 (245)
T ss_pred ccceEECcccccCCEEEEEEECCCCCCCHHH--HHHHHHHHHHCCCCEEEEEECcccCCCHHHH-HHHHHHHHHCCC-eE
Confidence 34444456789999999999999766 4443 33444322 2478999999999997543221 123334445676 78
Q ss_pred EEeecCCCCChHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhcCCc
Q 007334 270 IAISAETGLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDR 349 (607)
Q Consensus 270 i~iSA~~g~gi~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~~~~ 349 (607)
+++||++|.|+++|++.+.. ..++++|.+|||||||+|+|++...
T Consensus 101 ~~~SAktg~gi~eLf~~l~~-----------------------------------~~~~~~G~sgvGKStLiN~L~~~~~ 145 (245)
T TIGR00157 101 LMTSSKNQDGLKELIEALQN-----------------------------------RISVFAGQSGVGKSSLINALDPSVK 145 (245)
T ss_pred EEEecCCchhHHHHHhhhcC-----------------------------------CEEEEECCCCCCHHHHHHHHhhhhh
Confidence 99999999999999987642 1478999999999999999998766
Q ss_pred eeecCCCC-------ceeeeEEEEEEEcCeEEEEEecCCCcccc
Q 007334 350 VLVGPEAG-------LTRDSVRVHFEYQGRTVYLVDTAGWLQRE 386 (607)
Q Consensus 350 ~~~~~~~g-------tT~~~~~~~~~~~~~~~~liDTpG~~~~~ 386 (607)
..+++.++ ||++.....+ .+ ..|+||||+....
T Consensus 146 ~~t~~i~~~~~~G~hTT~~~~l~~l--~~--~~liDtPG~~~~~ 185 (245)
T TIGR00157 146 QQVNDISSKLGLGKHTTTHVELFHF--HG--GLIADTPGFNEFG 185 (245)
T ss_pred ccccceeccCCCCCCcCCceEEEEc--CC--cEEEeCCCccccC
Confidence 66555543 7777655444 32 3799999997763
No 281
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.77 E-value=4e-18 Score=160.22 Aligned_cols=145 Identities=20% Similarity=0.195 Sum_probs=101.4
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
..+|+++|.+|||||||++++++.. ......++++.+.....+.+++. .+.+|||||+.... .....
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~----------~~~~~ 75 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGL-FPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFR----------SITQS 75 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHH----------HHHHH
Confidence 3799999999999999999998653 22333445555666666777774 46789999964321 12245
Q ss_pred HHhhccEEEEEeccchh-------h-------HHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEV-------R-------AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~-------~-------~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
++..+|++++|+|+++. . ....+.|+++|+||+|+.+..+.... .. ..+.+ ....
T Consensus 76 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~---~~----~~~~~----~~~~ 144 (169)
T cd04114 76 YYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQ---RA----EEFSD----AQDM 144 (169)
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHH---HH----HHHHH----HcCC
Confidence 77889999999999865 0 01236899999999998754332111 11 11111 1236
Q ss_pred CEEEcccCCCCCHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
+++++||++|.|++++|+.|.+.
T Consensus 145 ~~~~~Sa~~~~gv~~l~~~i~~~ 167 (169)
T cd04114 145 YYLETSAKESDNVEKLFLDLACR 167 (169)
T ss_pred eEEEeeCCCCCCHHHHHHHHHHH
Confidence 79999999999999999998764
No 282
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.77 E-value=3.5e-18 Score=161.56 Aligned_cols=153 Identities=19% Similarity=0.222 Sum_probs=98.5
Q ss_pred EEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHHHh
Q 007334 327 LAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKNLM 404 (607)
Q Consensus 327 v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~ 404 (607)
|+++|.+|||||||++++++... ...+..+..+.....+..++. .+.+|||||..+.. .. ...++.
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---------~~-~~~~~~ 68 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAF--PEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYD---------RL-RPLSYP 68 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCC--CCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccc---------hh-chhhcC
Confidence 58999999999999999997642 233334444444445566665 47799999964331 11 123567
Q ss_pred hccEEEEEeccchhh--------------HHhcCCcEEEEEeCccCCCCcCchHHHHHH-HHhcHHHHHhhCCCCCC-CC
Q 007334 405 RAHVVALVLDAEEVR--------------AVEEGRGLVVIVNKMDLLSGRQNSALYKRV-KEAVPQEIQTVIPQVTG-IP 468 (607)
Q Consensus 405 ~ad~~llViD~~~~~--------------~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~ 468 (607)
.+|++|+|+|+++.. ....++|+++|+||+|+.......+.+... ...+..+....++...+ .+
T Consensus 69 ~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 148 (174)
T smart00174 69 DTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVK 148 (174)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcE
Confidence 899999999998750 012379999999999997532111000000 00111122222222234 48
Q ss_pred EEEcccCCCCCHHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
++++||++|.|++++|+.+.+.+
T Consensus 149 ~~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 149 YLECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred EEEecCCCCCCHHHHHHHHHHHh
Confidence 99999999999999999988754
No 283
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.77 E-value=5e-18 Score=163.93 Aligned_cols=152 Identities=18% Similarity=0.209 Sum_probs=108.2
Q ss_pred ecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee--CCeeEEEecCCCCccccCchhHHHHHHHHHHHHhhc
Q 007334 126 IGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL--GDLRFKVLDSAGLETEATSGSILDRTAGMTANVLAK 203 (607)
Q Consensus 126 vG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 203 (607)
||.+|||||||+++++...+. ..... ++..+.....+.+ ....+.||||+|.+ ++...+..+++.
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~--~~~~~-Tig~~~~~~~~~~~~~~~~l~iwDt~G~e----------~~~~l~~~~~~~ 67 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFE--KKYVA-TLGVEVHPLVFHTNRGPIRFNVWDTAGQE----------KFGGLRDGYYIQ 67 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCC--CCCCC-ceeEEEEEEEEEECCEEEEEEEEECCCch----------hhhhhhHHHhcC
Confidence 699999999999999976542 11111 1223333333333 34689999999998 566677789999
Q ss_pred cCEEEEEEecCCCCCHhHH-HHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCChHH
Q 007334 204 TQFAIFMIDVRSGLHPLDL-EVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTE 282 (607)
Q Consensus 204 ad~vl~VvD~s~~~~~~~~-~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi~e 282 (607)
+|++|+|+|++++.+.... .+...+.+...+.|+++|+||+|+.... ... +........++ .++++||++|.||++
T Consensus 68 ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~-v~~-~~~~~~~~~~~-~~~e~SAk~~~~v~~ 144 (200)
T smart00176 68 GQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRK-VKA-KSITFHRKKNL-QYYDISAKSNYNFEK 144 (200)
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECccccccc-CCH-HHHHHHHHcCC-EEEEEeCCCCCCHHH
Confidence 9999999999998777653 2444444445678999999999986432 222 22334444555 789999999999999
Q ss_pred HHHHhccchHH
Q 007334 283 LYEALRPSVED 293 (607)
Q Consensus 283 L~~~i~~~l~~ 293 (607)
+|++|...+..
T Consensus 145 ~F~~l~~~i~~ 155 (200)
T smart00176 145 PFLWLARKLIG 155 (200)
T ss_pred HHHHHHHHHHh
Confidence 99999876643
No 284
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.77 E-value=2.8e-18 Score=162.17 Aligned_cols=154 Identities=19% Similarity=0.184 Sum_probs=100.5
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeE--EEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRT--VYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|+|||||++++++... ...+.+++.+.....+..++.. +.+|||||..+.... ...+
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------~~~~ 68 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAF--PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRL----------RPLS 68 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCceeeeeEEEEEECCEEEEEEEEeCCCccccccc----------cccc
Confidence 4899999999999999999997642 3444555555555556666654 568999996544211 1134
Q ss_pred HhhccEEEEEeccchhh--------------HHhcCCcEEEEEeCccCCCCcCchHHHHHH-HHhcHHHHHhhCCC-CCC
Q 007334 403 LMRAHVVALVLDAEEVR--------------AVEEGRGLVVIVNKMDLLSGRQNSALYKRV-KEAVPQEIQTVIPQ-VTG 466 (607)
Q Consensus 403 i~~ad~~llViD~~~~~--------------~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~ 466 (607)
+..+|++++|+|.++.. ....++|+++|+||+|+.+........... ...+..+..+.++. ...
T Consensus 69 ~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 148 (174)
T cd04135 69 YPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGA 148 (174)
T ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCC
Confidence 56899999999998761 113579999999999986542211100000 00111111111111 223
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
.+++++||++|.|++++|+.+++.
T Consensus 149 ~~~~e~Sa~~~~gi~~~f~~~~~~ 172 (174)
T cd04135 149 HCYVECSALTQKGLKTVFDEAILA 172 (174)
T ss_pred CEEEEecCCcCCCHHHHHHHHHHH
Confidence 479999999999999999998765
No 285
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.77 E-value=2.5e-18 Score=161.55 Aligned_cols=147 Identities=22% Similarity=0.296 Sum_probs=94.3
Q ss_pred CEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCC--------
Q 007334 205 QFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAET-------- 276 (607)
Q Consensus 205 d~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~-------- 276 (607)
|+|++|+|++.+.+..+.++.+.+.-...++|+|+|+||+|+.+... .......+... ...+...|+..
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~--l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 77 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPKEN--VEKWLKYLRRE-FPTVAFKASTQSQKKNLGQ 77 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCCHHH--HHHHHHHHHhh-CCEEEEEecccccccchhh
Confidence 79999999999888877777777321123689999999999976321 12222223222 21222223221
Q ss_pred -----------------CCChHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhH
Q 007334 277 -----------------GLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKST 339 (607)
Q Consensus 277 -----------------g~gi~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSs 339 (607)
+.|.++|++.+.+... ......+++|+++|.|||||||
T Consensus 78 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~-------------------------~~~~~~~~~~~~vG~pnvGKSs 132 (172)
T cd04178 78 KSVKVEAASADLLRSSVCFGADCLLKLLKNYSR-------------------------NKDIKTSITVGVVGFPNVGKSS 132 (172)
T ss_pred cccccchhhhhhhhhccccCHHHHHHHHHHHhh-------------------------ccccccCcEEEEEcCCCCCHHH
Confidence 1122222221111000 0011235799999999999999
Q ss_pred HHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCC
Q 007334 340 LLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGW 382 (607)
Q Consensus 340 lin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~ 382 (607)
|+|+|++...+.+++.||+|++.....+ +..+.++||||+
T Consensus 133 lin~l~~~~~~~~~~~pg~T~~~~~~~~---~~~~~l~DtPGi 172 (172)
T cd04178 133 LINSLKRSRACNVGATPGVTKSMQEVHL---DKKVKLLDSPGI 172 (172)
T ss_pred HHHHHhCcccceecCCCCeEcceEEEEe---CCCEEEEECcCC
Confidence 9999999888899999999998665443 356899999995
No 286
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.77 E-value=3.1e-18 Score=168.31 Aligned_cols=145 Identities=18% Similarity=0.168 Sum_probs=99.0
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCc-eeecCCCCceeeeEEEEEEEc--CeEEEEEecCCCcccccccCcchhHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDR-VLVGPEAGLTRDSVRVHFEYQ--GRTVYLVDTAGWLQREKEKGPASLSVMQS 399 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~-~~~~~~~gtT~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 399 (607)
..+||+++|.+|||||||+++++.... ....++.|++.. ...+..+ ...+.||||||..++. ...
T Consensus 12 ~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~--~~~~~~~~~~~~l~i~Dt~G~~~~~----------~~~ 79 (219)
T PLN03071 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH--PLDFFTNCGKIRFYCWDTAGQEKFG----------GLR 79 (219)
T ss_pred CceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEE--EEEEEECCeEEEEEEEECCCchhhh----------hhh
Confidence 358999999999999999999875532 123333343333 3334333 3578899999965431 112
Q ss_pred HHHHhhccEEEEEeccchhh-------------HHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 400 RKNLMRAHVVALVLDAEEVR-------------AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 400 ~~~i~~ad~~llViD~~~~~-------------~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
..+++.+|++|+|+|.++.. ....+.|+++|+||+|+.......+ . + .+. ...+
T Consensus 80 ~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~---~----~--~~~----~~~~ 146 (219)
T PLN03071 80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK---Q----V--TFH----RKKN 146 (219)
T ss_pred HHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCCHH---H----H--HHH----HhcC
Confidence 34677899999999999861 1125789999999999864321111 1 1 111 1235
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
++++++||++|.|++++|.++.+.+.
T Consensus 147 ~~~~e~SAk~~~~i~~~f~~l~~~~~ 172 (219)
T PLN03071 147 LQYYEISAKSNYNFEKPFLYLARKLA 172 (219)
T ss_pred CEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999987654
No 287
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.77 E-value=5.8e-18 Score=157.36 Aligned_cols=150 Identities=17% Similarity=0.156 Sum_probs=102.6
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHh
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVL 201 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 201 (607)
+|+++|.+|||||||++++++...... . .|.......+.+.+..+.+|||||+. .+......++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~--~----~t~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~~~~~ 64 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTT--I----PTIGFNVETVEYKNVSFTVWDVGGQD----------KIRPLWKHYY 64 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCC--C----CCcCcceEEEEECCEEEEEEECCCCh----------hhHHHHHHHh
Confidence 489999999999999999998863211 1 22223334455678899999999987 3444556778
Q ss_pred hccCEEEEEEecCCCCCHhHH-H-HHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHh----cCCCCcEEeec
Q 007334 202 AKTQFAIFMIDVRSGLHPLDL-E-VGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLM----LGFGDPIAISA 274 (607)
Q Consensus 202 ~~ad~vl~VvD~s~~~~~~~~-~-~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~----~~~~~~i~iSA 274 (607)
..+|++++|+|++++.+.... . +...+... ..+.|+++|+||+|+..... ..+....... ....+++++||
T Consensus 65 ~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa 142 (158)
T cd00878 65 ENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALS--VSELIEKLGLEKILGRRWHIQPCSA 142 (158)
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccC--HHHHHHhhChhhccCCcEEEEEeeC
Confidence 999999999999986544431 1 22222221 24789999999999876431 1222222111 11225799999
Q ss_pred CCCCChHHHHHHhcc
Q 007334 275 ETGLGMTELYEALRP 289 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~ 289 (607)
++|.|++++++.|..
T Consensus 143 ~~~~gv~~~~~~l~~ 157 (158)
T cd00878 143 VTGDGLDEGLDWLLQ 157 (158)
T ss_pred CCCCCHHHHHHHHhh
Confidence 999999999998864
No 288
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.77 E-value=6.6e-18 Score=159.37 Aligned_cols=147 Identities=24% Similarity=0.229 Sum_probs=98.7
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
||+++|.+|||||||++++++.. +.....|.+..+.....+.+++. .+.||||||..+. .. ....++
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~-f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~---------~~-~~~~~~ 70 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDV-FDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERF---------KC-IASTYY 70 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHH---------Hh-hHHHHh
Confidence 79999999999999999999763 32233344445555455666654 6789999996432 11 224567
Q ss_pred hhccEEEEEeccchh-----------hHHhc----CCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 404 MRAHVVALVLDAEEV-----------RAVEE----GRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 404 ~~ad~~llViD~~~~-----------~~~~~----~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
+.+|++++|+|+++. ..... ..|+++|+||+|+.+..... ..+... ..+.+ ..+.+
T Consensus 71 ~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~-~~~~~~----~~~~~----~~~~~ 141 (170)
T cd04108 71 RGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYA-LMEQDA----IKLAA----EMQAE 141 (170)
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCcccccc-ccHHHH----HHHHH----HcCCe
Confidence 899999999999874 11111 25689999999986542211 001000 01111 12468
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
++++||++|.|++++|+.+.+.+.
T Consensus 142 ~~e~Sa~~g~~v~~lf~~l~~~~~ 165 (170)
T cd04108 142 YWSVSALSGENVREFFFRVAALTF 165 (170)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999988764
No 289
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.77 E-value=5.2e-18 Score=162.15 Aligned_cols=151 Identities=26% Similarity=0.347 Sum_probs=106.4
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeec---------------CCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccC
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVG---------------PEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKG 390 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~---------------~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~ 390 (607)
+|+++|.+|+|||||+|+|++....... ...++|.+.....+.+.+..+.+|||||+.+..
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~---- 76 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFS---- 76 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHH----
Confidence 4899999999999999999976543211 234567676666677788899999999964331
Q ss_pred cchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhh
Q 007334 391 PASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTV 460 (607)
Q Consensus 391 ~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 460 (607)
.....++..+|++++|+|++++ .....++|+++|+||+|+..........+.+ .+.+...
T Consensus 77 ------~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~----~~~~~~~ 146 (189)
T cd00881 77 ------SEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREI----KELLGLI 146 (189)
T ss_pred ------HHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHH----HHHHccc
Confidence 2344667789999999999864 1223589999999999998643222222222 1222111
Q ss_pred ---------CCCCCCCCEEEcccCCCCCHHHHHHHHHHH
Q 007334 461 ---------IPQVTGIPVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 461 ---------~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
.......+++++||++|.|++++++.+.+.
T Consensus 147 ~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~ 185 (189)
T cd00881 147 GFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEH 185 (189)
T ss_pred cccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhh
Confidence 112346799999999999999999888764
No 290
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=6.9e-18 Score=146.65 Aligned_cols=158 Identities=17% Similarity=0.188 Sum_probs=117.6
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
+++|++||..|||||+|+.+++..-+ ..-.+++...|.....++.+| .++++|||+|++ ++.+.+
T Consensus 7 lfkivlvgnagvgktclvrrftqglf---ppgqgatigvdfmiktvev~gekiklqiwdtagqe----------rfrsit 73 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLF---PPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQE----------RFRSIT 73 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCC---CCCCCceeeeeEEEEEEEECCeEEEEEEeeccchH----------HHHHHH
Confidence 68999999999999999999997643 112234455677777777655 579999999999 899999
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhh----CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEee
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH----APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAIS 273 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~----~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iS 273 (607)
..|++.|+.+++|+|++...++.- +-+||++. ....-.|+|+||+|+.+.+++... .-.++.....--++++|
T Consensus 74 qsyyrsahalilvydiscqpsfdc--lpewlreie~yan~kvlkilvgnk~d~~drrevp~q-igeefs~~qdmyflets 150 (213)
T KOG0095|consen 74 QSYYRSAHALILVYDISCQPSFDC--LPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQ-IGEEFSEAQDMYFLETS 150 (213)
T ss_pred HHHhhhcceEEEEEecccCcchhh--hHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHH-HHHHHHHhhhhhhhhhc
Confidence 999999999999999998777654 34555543 223445899999999887654332 22233333322458999
Q ss_pred cCCCCChHHHHHHhccchHH
Q 007334 274 AETGLGMTELYEALRPSVED 293 (607)
Q Consensus 274 A~~g~gi~eL~~~i~~~l~~ 293 (607)
|+...+++.||..+.-.+-.
T Consensus 151 akea~nve~lf~~~a~rli~ 170 (213)
T KOG0095|consen 151 AKEADNVEKLFLDLACRLIS 170 (213)
T ss_pred ccchhhHHHHHHHHHHHHHH
Confidence 99999999999888765543
No 291
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.77 E-value=2.3e-18 Score=162.89 Aligned_cols=153 Identities=18% Similarity=0.179 Sum_probs=101.1
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||++++++.. ....+++|+.+.....+..++. .+.+|||||..+... .. ..+
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---------~~-~~~ 68 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNG--YPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDK---------LR-PLC 68 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhcc---------cc-ccc
Confidence 489999999999999999998653 3445666777766666666664 667899999744321 11 135
Q ss_pred HhhccEEEEEeccchhh----H----------HhcCCcEEEEEeCccCCCCcCchHHHH-HHHHhcHHHHHhhCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEVR----A----------VEEGRGLVVIVNKMDLLSGRQNSALYK-RVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~~----~----------~~~~~p~ivv~NK~Dl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 467 (607)
++.+|++|+|+|+++.. . ...++|+++|+||+|+.........+. .-.+.+..+....++...+.
T Consensus 69 ~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~ 148 (173)
T cd04130 69 YPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGA 148 (173)
T ss_pred cCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCC
Confidence 67899999999998751 0 113689999999999975421000000 00011111112222222344
Q ss_pred -CEEEcccCCCCCHHHHHHHHHH
Q 007334 468 -PVVFTSALEGRGRIAVMHQVID 489 (607)
Q Consensus 468 -~~v~iSA~~g~gv~~l~~~i~~ 489 (607)
+++++||++|.|++++|+.++-
T Consensus 149 ~~~~e~Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 149 CEYIECSALTQKNLKEVFDTAIL 171 (173)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHh
Confidence 8999999999999999988753
No 292
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.77 E-value=9.3e-18 Score=176.42 Aligned_cols=206 Identities=20% Similarity=0.268 Sum_probs=132.8
Q ss_pred HHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHH----HHHHhcCCC
Q 007334 192 RTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAA----AESLMLGFG 267 (607)
Q Consensus 192 ~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~----~~~~~~~~~ 267 (607)
++......+...++++++|+|+.+.......++.+.+ .++|+++|+||+|+.+.... .+... ..+...++.
T Consensus 52 ~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~----~~~piilV~NK~DLl~k~~~-~~~~~~~l~~~~k~~g~~ 126 (360)
T TIGR03597 52 DFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV----GGNPVLLVGNKIDLLPKSVN-LSKIKEWMKKRAKELGLK 126 (360)
T ss_pred HHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh----CCCCEEEEEEchhhCCCCCC-HHHHHHHHHHHHHHcCCC
Confidence 4555666677889999999999875544333343333 36799999999999864321 12211 234455653
Q ss_pred --CcEEeecCCCCChHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhh
Q 007334 268 --DPIAISAETGLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALL 345 (607)
Q Consensus 268 --~~i~iSA~~g~gi~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~ 345 (607)
.++.+||++|.|+++|++.|.+... ..+|++||.+|||||||+|+|+
T Consensus 127 ~~~i~~vSAk~g~gv~eL~~~l~~~~~-------------------------------~~~v~~vG~~nvGKStliN~l~ 175 (360)
T TIGR03597 127 PVDIILVSAKKGNGIDELLDKIKKARN-------------------------------KKDVYVVGVTNVGKSSLINKLL 175 (360)
T ss_pred cCcEEEecCCCCCCHHHHHHHHHHHhC-------------------------------CCeEEEECCCCCCHHHHHHHHH
Confidence 5799999999999999998854210 1479999999999999999999
Q ss_pred cCC-----ceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH---hhccEEEEEeccch
Q 007334 346 QED-----RVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL---MRAHVVALVLDAEE 417 (607)
Q Consensus 346 ~~~-----~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i---~~ad~~llViD~~~ 417 (607)
+.. ...+++.||||++..... . +..+.|+||||+...... ...+. ......+ .......+.+|...
T Consensus 176 ~~~~~~~~~~~~s~~pgtT~~~~~~~--~-~~~~~l~DtPG~~~~~~~--~~~l~-~~~l~~~~~~~~i~~~~~~l~~~q 249 (360)
T TIGR03597 176 KQNNGDKDVITTSPFPGTTLDLIEIP--L-DDGHSLYDTPGIINSHQM--AHYLD-KKDLKYITPKKEIKPKTYQLNPNQ 249 (360)
T ss_pred hhccCCcceeeecCCCCeEeeEEEEE--e-CCCCEEEECCCCCChhHh--hhhcC-HHHHhhcCCCCccCceEEEeCCCC
Confidence 753 357899999999976543 3 234679999998754210 00111 1111111 12455666666554
Q ss_pred h---------h-HHhcCCcEEEEEeCccCCCC
Q 007334 418 V---------R-AVEEGRGLVVIVNKMDLLSG 439 (607)
Q Consensus 418 ~---------~-~~~~~~p~ivv~NK~Dl~~~ 439 (607)
. . .......+.+.++|.+....
T Consensus 250 ~~~~ggl~~~d~~~~~~~~~~~~~~~~~~~h~ 281 (360)
T TIGR03597 250 TLFLGGLARFDYLKGEKTSFTFYVSNELNIHR 281 (360)
T ss_pred EEEEceEEEEEEecCCceEEEEEccCCceeEe
Confidence 3 1 11134456777777666544
No 293
>PRK12289 GTPase RsgA; Reviewed
Probab=99.77 E-value=3.2e-18 Score=177.77 Aligned_cols=147 Identities=24% Similarity=0.360 Sum_probs=107.7
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAET 276 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~ 276 (607)
...+.++|.+++|+|+.++.. ....+.+||... ..++|+++|+||+|+..... .......+...|+ +++++||++
T Consensus 84 R~~~aNvD~vLlV~d~~~p~~-~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~--~~~~~~~~~~~g~-~v~~iSA~t 159 (352)
T PRK12289 84 RPPVANADQILLVFALAEPPL-DPWQLSRFLVKAESTGLEIVLCLNKADLVSPTE--QQQWQDRLQQWGY-QPLFISVET 159 (352)
T ss_pred chhhhcCCEEEEEEECCCCCC-CHHHHHHHHHHHHHCCCCEEEEEEchhcCChHH--HHHHHHHHHhcCC-eEEEEEcCC
Confidence 345789999999999987542 222334444332 24789999999999975321 1222334456777 789999999
Q ss_pred CCChHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhcCCceeecCCC
Q 007334 277 GLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEA 356 (607)
Q Consensus 277 g~gi~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~ 356 (607)
|.|+++|++.|.. ..++++|.||||||||+|+|++.....+++.+
T Consensus 160 g~GI~eL~~~L~~-----------------------------------ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs 204 (352)
T PRK12289 160 GIGLEALLEQLRN-----------------------------------KITVVAGPSGVGKSSLINRLIPDVELRVGKVS 204 (352)
T ss_pred CCCHHHHhhhhcc-----------------------------------ceEEEEeCCCCCHHHHHHHHcCcccccccccc
Confidence 9999999887642 13799999999999999999998888888888
Q ss_pred C-------ceeeeEEEEEEEcCeEEEEEecCCCcccc
Q 007334 357 G-------LTRDSVRVHFEYQGRTVYLVDTAGWLQRE 386 (607)
Q Consensus 357 g-------tT~~~~~~~~~~~~~~~~liDTpG~~~~~ 386 (607)
+ ||++..... ..+. ..|+||||+..+.
T Consensus 205 ~~~~rGrHTT~~~~l~~--l~~g-~~liDTPG~~~~~ 238 (352)
T PRK12289 205 GKLGRGRHTTRHVELFE--LPNG-GLLADTPGFNQPD 238 (352)
T ss_pred CCCCCCCCcCceeEEEE--CCCC-cEEEeCCCccccc
Confidence 8 888764333 3221 2799999997764
No 294
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.77 E-value=4.6e-18 Score=189.06 Aligned_cols=146 Identities=27% Similarity=0.349 Sum_probs=109.0
Q ss_pred cCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEE
Q 007334 331 GRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVA 410 (607)
Q Consensus 331 G~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~l 410 (607)
|.||||||||+|+|+|.+ ..++++||+|++...+.+++++.++.+|||||+.+.......+.. .+.......+|+++
T Consensus 1 G~pNvGKSSL~N~Ltg~~-~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v--~~~~l~~~~aDvvI 77 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGAN-QTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEV--ARDYLLNEKPDLVV 77 (591)
T ss_pred CCCCCCHHHHHHHHhCCC-CeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHH--HHHHHhhcCCCEEE
Confidence 899999999999999875 678999999999999899999999999999998765321111111 11111223699999
Q ss_pred EEeccchh--------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHH
Q 007334 411 LVLDAEEV--------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIA 482 (607)
Q Consensus 411 lViD~~~~--------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~ 482 (607)
+|+|+++. +..+.++|+++|+||+|+.+........+. +.+ ..++|++++||++|.|+++
T Consensus 78 ~VvDat~ler~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~~d~~~--------L~~----~lg~pvv~tSA~tg~Gi~e 145 (591)
T TIGR00437 78 NVVDASNLERNLYLTLQLLELGIPMILALNLVDEAEKKGIRIDEEK--------LEE----RLGVPVVPTSATEGRGIER 145 (591)
T ss_pred EEecCCcchhhHHHHHHHHhcCCCEEEEEehhHHHHhCCChhhHHH--------HHH----HcCCCEEEEECCCCCCHHH
Confidence 99999875 234568999999999998754332211111 111 2367999999999999999
Q ss_pred HHHHHHHHH
Q 007334 483 VMHQVIDTY 491 (607)
Q Consensus 483 l~~~i~~~~ 491 (607)
+++.+.+..
T Consensus 146 L~~~i~~~~ 154 (591)
T TIGR00437 146 LKDAIRKAI 154 (591)
T ss_pred HHHHHHHHh
Confidence 999998753
No 295
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.76 E-value=6.4e-18 Score=168.57 Aligned_cols=145 Identities=17% Similarity=0.211 Sum_probs=100.8
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||++++++... ...+.+|+.+.....+.+++. .+.||||||..++ ..++ ..+
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f--~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~---------~~~~-~~~ 68 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRF--EEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPF---------PAMR-RLS 68 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCC--CCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhh---------hHHH-HHH
Confidence 4799999999999999999986532 234555555666666677774 5669999996433 1122 235
Q ss_pred HhhccEEEEEeccchh-----------hHH------------hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHh
Q 007334 403 LMRAHVVALVLDAEEV-----------RAV------------EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQT 459 (607)
Q Consensus 403 i~~ad~~llViD~~~~-----------~~~------------~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 459 (607)
+..+|++|+|+|+++. ... ..++|+|+|+||+|+....... .+ ++.+
T Consensus 69 ~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~--~~--------ei~~ 138 (247)
T cd04143 69 ILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQ--RD--------EVEQ 138 (247)
T ss_pred hccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccC--HH--------HHHH
Confidence 6789999999999875 111 1368999999999997532211 11 1111
Q ss_pred hCCCCCCCCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 460 VIPQVTGIPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 460 ~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
.+......+++++||++|.|++++|+.|....
T Consensus 139 ~~~~~~~~~~~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 139 LVGGDENCAYFEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred HHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 11112256899999999999999999998754
No 296
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.76 E-value=9e-18 Score=190.85 Aligned_cols=160 Identities=27% Similarity=0.287 Sum_probs=118.7
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchh--HHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGS--ILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~--~~~~~~~~~~ 198 (607)
.+|+++|+||||||||+|+|++.+. .+++.+| +|.+...+.+.+++.++.+|||||+.+...... ...+. ...
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pG--vTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~--i~~ 78 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAG--VTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQ--IAC 78 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCC--ceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHH--HHH
Confidence 5799999999999999999999765 5788888 999999999988999999999999985432100 11111 122
Q ss_pred HH--hhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCC
Q 007334 199 NV--LAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAET 276 (607)
Q Consensus 199 ~~--~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~ 276 (607)
.+ ...+|++++|+|+++... +..+...+.+. ++|+++|+||+|+.+.+... .........+|. +++++||.+
T Consensus 79 ~~l~~~~aD~vI~VvDat~ler--~l~l~~ql~e~--giPvIvVlNK~Dl~~~~~i~-id~~~L~~~LG~-pVvpiSA~~ 152 (772)
T PRK09554 79 HYILSGDADLLINVVDASNLER--NLYLTLQLLEL--GIPCIVALNMLDIAEKQNIR-IDIDALSARLGC-PVIPLVSTR 152 (772)
T ss_pred HHHhccCCCEEEEEecCCcchh--hHHHHHHHHHc--CCCEEEEEEchhhhhccCcH-HHHHHHHHHhCC-CEEEEEeec
Confidence 23 358999999999987432 33344555555 78999999999987543322 222233455677 889999999
Q ss_pred CCChHHHHHHhccch
Q 007334 277 GLGMTELYEALRPSV 291 (607)
Q Consensus 277 g~gi~eL~~~i~~~l 291 (607)
|+|++++.+.+.+..
T Consensus 153 g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 153 GRGIEALKLAIDRHQ 167 (772)
T ss_pred CCCHHHHHHHHHHhh
Confidence 999999999987643
No 297
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.76 E-value=6.6e-18 Score=162.70 Aligned_cols=154 Identities=14% Similarity=0.133 Sum_probs=106.3
Q ss_pred CEEEEecCCCCchhHHHH-Hhhcccee---eeccCCCCceee--eeEEE----------EeeeCCeeEEEecCCCCcccc
Q 007334 121 PTVMIIGRPNVGKSALFN-RLIRRREA---LVYNTPDDHVTR--DIREG----------LAKLGDLRFKVLDSAGLETEA 184 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n-~L~~~~~~---~v~~~~~~~~T~--~~~~~----------~~~~~~~~~~liDTpG~~~~~ 184 (607)
.+|+++|.+|||||||++ ++.+..+. ....... |.. +.... .++.....+.||||+|+..
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~p--Ti~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~-- 78 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVP--TVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD-- 78 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCC--ceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--
Confidence 589999999999999996 55543221 1111111 211 11111 1222346899999999972
Q ss_pred CchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHH--HHHHHHHhhCCCCcEEEEecCCCccc--------------
Q 007334 185 TSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLH-------------- 248 (607)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~D~~~-------------- 248 (607)
. ....++..||++++|+|++++.+.... .+...++...++.|+++|+||+|+..
T Consensus 79 --------~--~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~ 148 (195)
T cd01873 79 --------K--DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLA 148 (195)
T ss_pred --------h--hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccc
Confidence 1 123478999999999999998777764 24455555455789999999999864
Q ss_pred -----CCcCcHHHHHHHHHhcCCCCcEEeecCCCCChHHHHHHhcc
Q 007334 249 -----NGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRP 289 (607)
Q Consensus 249 -----~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi~eL~~~i~~ 289 (607)
.+.+..++....+...+. .++++||++|.|++++|+.+.+
T Consensus 149 ~~~~~~~~V~~~e~~~~a~~~~~-~~~E~SAkt~~~V~e~F~~~~~ 193 (195)
T cd01873 149 RPIKNADILPPETGRAVAKELGI-PYYETSVVTQFGVKDVFDNAIR 193 (195)
T ss_pred cccccCCccCHHHHHHHHHHhCC-EEEEcCCCCCCCHHHHHHHHHH
Confidence 234455566666777787 7899999999999999998764
No 298
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.76 E-value=7.8e-18 Score=160.24 Aligned_cols=148 Identities=22% Similarity=0.243 Sum_probs=97.0
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCC-ceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccC-cchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQED-RVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKG-PASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~-~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~-~~~~~~~~~~ 400 (607)
...+|+++|.+|+|||||+|+|++.. ...+++.+|+|.+..... .+ ..+.+|||||+........ .+.+... ..
T Consensus 17 ~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~--~~-~~~~liDtpG~~~~~~~~~~~~~~~~~-~~ 92 (179)
T TIGR03598 17 DGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFE--VN-DGFRLVDLPGYGYAKVSKEEKEKWQKL-IE 92 (179)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEE--eC-CcEEEEeCCCCccccCChhHHHHHHHH-HH
Confidence 45799999999999999999999875 456778899988765433 23 3799999999754321110 1111111 11
Q ss_pred HHHh---hccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 401 KNLM---RAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 401 ~~i~---~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
.+++ .+|++++|+|++.+ .....++|+++|+||+|+....+.....+. +.+.+... ....
T Consensus 93 ~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~----i~~~l~~~---~~~~ 165 (179)
T TIGR03598 93 EYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKKSELNKQLKK----IKKALKKD---ADDP 165 (179)
T ss_pred HHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHH----HHHHHhhc---cCCC
Confidence 2333 46899999999874 122357999999999999754322222222 22222221 1235
Q ss_pred CEEEcccCCCCCHH
Q 007334 468 PVVFTSALEGRGRI 481 (607)
Q Consensus 468 ~~v~iSA~~g~gv~ 481 (607)
+++++||++|+|++
T Consensus 166 ~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 166 SVQLFSSLKKTGID 179 (179)
T ss_pred ceEEEECCCCCCCC
Confidence 89999999999973
No 299
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.76 E-value=9.4e-18 Score=160.06 Aligned_cols=150 Identities=14% Similarity=0.181 Sum_probs=98.2
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||++++++.. +.....|.+..+.....+..++. .+.||||+|..+. ..+ ...+
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~-f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~---------~~~-~~~~ 69 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGE-FDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREF---------INM-LPLV 69 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhH---------HHh-hHHH
Confidence 489999999999999999998763 32223344444555556666664 5679999995433 111 2346
Q ss_pred HhhccEEEEEeccchh-----------hHH---hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV-----------RAV---EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 403 i~~ad~~llViD~~~~-----------~~~---~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
++.||++++|+|+++. ... ....| |+|+||+|+......... + .+.. ..+.++...+.+
T Consensus 70 ~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~-~----~~~~-~~~~~a~~~~~~ 142 (182)
T cd04128 70 CNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQ-E----EITK-QARKYAKAMKAP 142 (182)
T ss_pred CcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhh-h----hhHH-HHHHHHHHcCCE
Confidence 7899999999999876 111 12355 789999999642110000 0 0111 111112223578
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
++++||++|.|++++|+.+.+.+.
T Consensus 143 ~~e~SAk~g~~v~~lf~~l~~~l~ 166 (182)
T cd04128 143 LIFCSTSHSINVQKIFKIVLAKAF 166 (182)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999887654
No 300
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.76 E-value=5.4e-18 Score=162.80 Aligned_cols=155 Identities=18% Similarity=0.197 Sum_probs=97.5
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
||+++|.+|||||||+++|++.... ..+..|..+.....+..++ ..+.||||||..+... . ...++
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~--~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~---------l-~~~~~ 69 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFP--QVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDR---------L-RSLSY 69 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--CccCCcceeeeEEEEEECCEEEEEEEEECCCChhccc---------c-ccccc
Confidence 7999999999999999999976432 2222232222333344455 4678999999644321 1 12356
Q ss_pred hhccEEEEEeccchh--------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHH-HhcHHHHHhhCC-CCCCC
Q 007334 404 MRAHVVALVLDAEEV--------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVK-EAVPQEIQTVIP-QVTGI 467 (607)
Q Consensus 404 ~~ad~~llViD~~~~--------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~ 467 (607)
..+|++++|+|+++. .....+.|+++|+||+|+.+............ ..+..+....++ ....+
T Consensus 70 ~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 149 (189)
T cd04134 70 ADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINAL 149 (189)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCC
Confidence 789999999999876 00123789999999999976532111111000 001111111111 12236
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
+++++||++|.|++++|+++.+.+.
T Consensus 150 ~~~e~SAk~~~~v~e~f~~l~~~~~ 174 (189)
T cd04134 150 RYLECSAKLNRGVNEAFTEAARVAL 174 (189)
T ss_pred EEEEccCCcCCCHHHHHHHHHHHHh
Confidence 8999999999999999999887653
No 301
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=8.1e-18 Score=146.86 Aligned_cols=159 Identities=19% Similarity=0.271 Sum_probs=123.8
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHH
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGM 196 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~ 196 (607)
.+++++++|..|.|||+|+.+++..++. +...-++..++....+..++ .+++||||+|++ ++...
T Consensus 8 yLfKfl~iG~aGtGKSCLLh~Fie~kfk---DdssHTiGveFgSrIinVGgK~vKLQIWDTAGQE----------rFRSV 74 (214)
T KOG0086|consen 8 YLFKFLVIGSAGTGKSCLLHQFIENKFK---DDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQE----------RFRSV 74 (214)
T ss_pred hhheeEEeccCCCChhHHHHHHHHhhhc---ccccceeeeeecceeeeecCcEEEEEEeecccHH----------HHHHH
Confidence 3689999999999999999999987642 22221234444444555444 579999999999 89999
Q ss_pred HHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhh----CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEe
Q 007334 197 TANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH----APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAI 272 (607)
Q Consensus 197 ~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~----~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~i 272 (607)
+..|++.|.++++|+|++...++.. +..||.+. .+++-+|+++||.|+...+++...+....+....+ .+.++
T Consensus 75 tRsYYRGAAGAlLVYD~Tsrdsfna--LtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel-~flET 151 (214)
T KOG0086|consen 75 TRSYYRGAAGALLVYDITSRDSFNA--LTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENEL-MFLET 151 (214)
T ss_pred HHHHhccccceEEEEeccchhhHHH--HHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccce-eeeee
Confidence 9999999999999999998877774 66777664 45777899999999999888777666655555555 67899
Q ss_pred ecCCCCChHHHHHHhccchHH
Q 007334 273 SAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 273 SA~~g~gi~eL~~~i~~~l~~ 293 (607)
||++|++++|.|-.....+-.
T Consensus 152 Sa~TGeNVEEaFl~c~~tIl~ 172 (214)
T KOG0086|consen 152 SALTGENVEEAFLKCARTILN 172 (214)
T ss_pred cccccccHHHHHHHHHHHHHH
Confidence 999999999988776665543
No 302
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=3.2e-18 Score=148.73 Aligned_cols=147 Identities=22% Similarity=0.251 Sum_probs=111.3
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
.-+||++||..|||||+|+.+++.. .+..+.-..+.+|.....++++|. +++||||+|+.+++ .-+.
T Consensus 6 flfkivlvgnagvgktclvrrftqg-lfppgqgatigvdfmiktvev~gekiklqiwdtagqerfr----------sitq 74 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQG-LFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFR----------SITQ 74 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhcc-CCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHH----------HHHH
Confidence 3579999999999999999999954 355555555667777777787776 56799999976553 3456
Q ss_pred HHHhhccEEEEEeccchh-------------hH-HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEV-------------RA-VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~-------------~~-~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
.+++.||++|+|+|.+.. +. ....+--|+|+||+|+.+. +.+++++++.++....
T Consensus 75 syyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~dr-----------revp~qigeefs~~qd 143 (213)
T KOG0095|consen 75 SYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADR-----------REVPQQIGEEFSEAQD 143 (213)
T ss_pred HHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhh-----------hhhhHHHHHHHHHhhh
Confidence 788999999999999863 11 1234456899999999765 3345556666665566
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
..++++||+...|++.||..+...+
T Consensus 144 myfletsakea~nve~lf~~~a~rl 168 (213)
T KOG0095|consen 144 MYFLETSAKEADNVEKLFLDLACRL 168 (213)
T ss_pred hhhhhhcccchhhHHHHHHHHHHHH
Confidence 7889999999999999999887543
No 303
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.76 E-value=6.6e-18 Score=148.77 Aligned_cols=116 Identities=28% Similarity=0.426 Sum_probs=93.5
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHh
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVL 201 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 201 (607)
+|+|+|.||||||||+|+|++.+.+.+++.++ +|+...+..+.+.+..+.++||||+.......... .........+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~--~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~-~~~~~~~~~~ 77 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPG--TTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDG-KEIRKFLEQI 77 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTT--SSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHH-HHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhcccccccccccc--ceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHH-HHHHHHHHHH
Confidence 58999999999999999999977777888887 88888888888899999999999998543222111 2444566777
Q ss_pred hccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecC
Q 007334 202 AKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNK 243 (607)
Q Consensus 202 ~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK 243 (607)
..+|++++|+|++++....+.++.++|+ . ++|+++|+||
T Consensus 78 ~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~--~~~~i~v~NK 116 (116)
T PF01926_consen 78 SKSDLIIYVVDASNPITEDDKNILRELK-N--KKPIILVLNK 116 (116)
T ss_dssp CTESEEEEEEETTSHSHHHHHHHHHHHH-T--TSEEEEEEES
T ss_pred HHCCEEEEEEECCCCCCHHHHHHHHHHh-c--CCCEEEEEcC
Confidence 9999999999988755555667888885 3 7899999998
No 304
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.76 E-value=1e-17 Score=157.61 Aligned_cols=150 Identities=19% Similarity=0.117 Sum_probs=102.0
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHh
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVL 201 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 201 (607)
+|+++|.+|||||||+|+|++....... .|.......+...+..+.+|||||.. ++......++
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~------~t~g~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~~~~~ 64 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVA------PTVGFTPTKLRLDKYEVCIFDLGGGA----------NFRGIWVNYY 64 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCcccc------CcccceEEEEEECCEEEEEEECCCcH----------HHHHHHHHHH
Confidence 4899999999999999999976221111 12222234556678899999999987 4556667899
Q ss_pred hccCEEEEEEecCCCCCHhHHHHHHHHHhh-----CCCCcEEEEecCCCcccCCcCcHHHHHHHHHh----cCC-CCcEE
Q 007334 202 AKTQFAIFMIDVRSGLHPLDLEVGKWLRKH-----APQIKPIVAMNKCESLHNGTGSLAGAAAESLM----LGF-GDPIA 271 (607)
Q Consensus 202 ~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~-----~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~----~~~-~~~i~ 271 (607)
..+|++++|+|+++..+..+ ...|+... ..++|+++|+||+|+................. .+. ..+++
T Consensus 65 ~~a~~ii~V~D~s~~~s~~~--~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~ 142 (167)
T cd04161 65 AEAHGLVFVVDSSDDDRVQE--VKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEP 142 (167)
T ss_pred cCCCEEEEEEECCchhHHHH--HHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEE
Confidence 99999999999998655443 22333321 24789999999999876542111111101111 121 14577
Q ss_pred eecCCC------CChHHHHHHhcc
Q 007334 272 ISAETG------LGMTELYEALRP 289 (607)
Q Consensus 272 iSA~~g------~gi~eL~~~i~~ 289 (607)
+||++| .|+++.+++|.+
T Consensus 143 ~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 143 CSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred eEceeCCCCccccCHHHHHHHHhc
Confidence 999998 899999999864
No 305
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.76 E-value=1.6e-17 Score=159.77 Aligned_cols=147 Identities=16% Similarity=0.088 Sum_probs=108.9
Q ss_pred CEEEEecCCCCchhHHHHHhhccce------eee---------ccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccC
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRRE------ALV---------YNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEAT 185 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~------~~v---------~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~ 185 (607)
.+|+++|++|+|||||+++|++... ... ....+ +|.+.....+..++.++.++||||+.
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg--~Ti~~~~~~~~~~~~~i~~iDtPG~~---- 76 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARG--ITINTAHVEYETANRHYAHVDCPGHA---- 76 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcC--ccEEeeeeEecCCCeEEEEEECcCHH----
Confidence 4799999999999999999986410 000 01234 77777777777788899999999987
Q ss_pred chhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCc-EEEEecCCCcccCCcCc---HHHHHHHH
Q 007334 186 SGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIK-PIVAMNKCESLHNGTGS---LAGAAAES 261 (607)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p-~ilV~NK~D~~~~~~~~---~~~~~~~~ 261 (607)
.+...+...+..+|++++|+|+..+...++.+++..+... ++| +|+|+||+|+....... ..+....+
T Consensus 77 ------~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l 148 (195)
T cd01884 77 ------DYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQV--GVPYIVVFLNKADMVDDEELLELVEMEVRELL 148 (195)
T ss_pred ------HHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHH
Confidence 5666777888999999999999999888888888888776 666 77999999987422110 11222333
Q ss_pred HhcCC----CCcEEeecCCCCChH
Q 007334 262 LMLGF----GDPIAISAETGLGMT 281 (607)
Q Consensus 262 ~~~~~----~~~i~iSA~~g~gi~ 281 (607)
..+++ .+++++||.+|.++.
T Consensus 149 ~~~g~~~~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 149 SKYGFDGDNTPIVRGSALKALEGD 172 (195)
T ss_pred HHhcccccCCeEEEeeCccccCCC
Confidence 44454 368999999999853
No 306
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.76 E-value=1.3e-17 Score=156.95 Aligned_cols=147 Identities=23% Similarity=0.236 Sum_probs=100.2
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|++|||||||+|++++.. ......+..+.+.....+.+.+. .+.+|||||..... .....+
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~----------~~~~~~ 69 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKK-FSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQ----------SLGVAF 69 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC-CCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHH----------hHHHHH
Confidence 489999999999999999999764 22333333444555555666665 45699999953321 123457
Q ss_pred HhhccEEEEEeccchhhH-----------H-------hcCCcEEEEEeCccCCCCcCc-hHHHHHHHHhcHHHHHhhCCC
Q 007334 403 LMRAHVVALVLDAEEVRA-----------V-------EEGRGLVVIVNKMDLLSGRQN-SALYKRVKEAVPQEIQTVIPQ 463 (607)
Q Consensus 403 i~~ad~~llViD~~~~~~-----------~-------~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 463 (607)
++.+|++|+|+|+++... . ..++|+++|+||+|+...... .+....+ ...
T Consensus 70 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-----------~~~ 138 (172)
T cd01862 70 YRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQW-----------CQS 138 (172)
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHH-----------HHH
Confidence 788999999999986510 0 127899999999999743211 1111111 111
Q ss_pred CCCCCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 464 VTGIPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 464 ~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
....+++++||++|.|++++|+.+.+.+.+
T Consensus 139 ~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~ 168 (172)
T cd01862 139 NGNIPYFETSAKEAINVEQAFETIARKALE 168 (172)
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 123689999999999999999998876543
No 307
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.76 E-value=4.3e-18 Score=165.99 Aligned_cols=144 Identities=25% Similarity=0.315 Sum_probs=99.7
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeec------------------------------CCCCceeeeEEEEEEEcCeEEE
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVG------------------------------PEAGLTRDSVRVHFEYQGRTVY 375 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~------------------------------~~~gtT~~~~~~~~~~~~~~~~ 375 (607)
+|+++|++|+|||||+++|++....+.. ...|+|++.....+.+++.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 5899999999999999999876544331 1278999999889999999999
Q ss_pred EEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCC-cEEEEEeCccCCCCcCchH
Q 007334 376 LVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGR-GLVVIVNKMDLLSGRQNSA 444 (607)
Q Consensus 376 liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~-p~ivv~NK~Dl~~~~~~~~ 444 (607)
||||||+.++. ..+..++..+|++|+|+|++++ .....+. ++|+|+||+|+.... ..
T Consensus 81 liDTpG~~~~~----------~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~--~~ 148 (208)
T cd04166 81 IADTPGHEQYT----------RNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYS--EE 148 (208)
T ss_pred EEECCcHHHHH----------HHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCC--HH
Confidence 99999964331 1234567889999999999875 1112343 578899999987532 12
Q ss_pred HHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHH
Q 007334 445 LYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAV 483 (607)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l 483 (607)
.++.+...+.. +.+.+. ....+++++||++|.|+.+.
T Consensus 149 ~~~~i~~~~~~-~~~~~~-~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 149 VFEEIVADYLA-FAAKLG-IEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHHHH-HHHHcC-CCCceEEEEeCCCCCCCccC
Confidence 22222222221 112222 12357999999999998754
No 308
>PLN03108 Rab family protein; Provisional
Probab=99.76 E-value=9.3e-18 Score=163.92 Aligned_cols=146 Identities=20% Similarity=0.150 Sum_probs=100.7
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.+||+++|.+|||||||+++|++... .....+.++.+.....+.+++. .+.+|||||.... . .....
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~-~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~---------~-~~~~~ 74 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRF-QPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESF---------R-SITRS 74 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHH---------H-HHHHH
Confidence 47999999999999999999997643 2233344444544445566554 5679999995332 1 12345
Q ss_pred HHhhccEEEEEeccchhh-----------H---HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEVR-----------A---VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~~-----------~---~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
+++.+|++|+|+|+++.. . .....|+++|+||+|+.+..... .+..+.+....++
T Consensus 75 ~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~-----------~~~~~~~~~~~~~ 143 (210)
T PLN03108 75 YYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS-----------TEEGEQFAKEHGL 143 (210)
T ss_pred HhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCC-----------HHHHHHHHHHcCC
Confidence 677899999999998750 1 11368999999999997643211 0011111112357
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+++++||++|.|++++|+++.+.+
T Consensus 144 ~~~e~Sa~~~~~v~e~f~~l~~~~ 167 (210)
T PLN03108 144 IFMEASAKTAQNVEEAFIKTAAKI 167 (210)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHH
Confidence 899999999999999999887654
No 309
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.76 E-value=1.8e-17 Score=183.39 Aligned_cols=152 Identities=23% Similarity=0.298 Sum_probs=115.4
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCe-eEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDL-RFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~-~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.|+|+++|++|+|||||+++|.+.+.+. ...++ +|.+.....+.+.+. .+.+|||||+. .+..+..
T Consensus 87 ~p~V~I~Ghvd~GKTSLl~~l~~~~v~~-~e~~G--IT~~ig~~~v~~~~~~~i~~iDTPGhe----------~F~~~r~ 153 (587)
T TIGR00487 87 PPVVTIMGHVDHGKTSLLDSIRKTKVAQ-GEAGG--ITQHIGAYHVENEDGKMITFLDTPGHE----------AFTSMRA 153 (587)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhCCccc-ccCCc--eeecceEEEEEECCCcEEEEEECCCCc----------chhhHHH
Confidence 5899999999999999999999876542 23345 788877767776544 89999999998 4445555
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCC--------CCcE
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGF--------GDPI 270 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~--------~~~i 270 (607)
..+..+|++++|+|++++...+..+.+..++.. +.|+++++||+|+..... +.....+...++ .+++
T Consensus 154 rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~--~vPiIVviNKiDl~~~~~---e~v~~~L~~~g~~~~~~~~~~~~v 228 (587)
T TIGR00487 154 RGAKVTDIVVLVVAADDGVMPQTIEAISHAKAA--NVPIIVAINKIDKPEANP---DRVKQELSEYGLVPEDWGGDTIFV 228 (587)
T ss_pred hhhccCCEEEEEEECCCCCCHhHHHHHHHHHHc--CCCEEEEEECcccccCCH---HHHHHHHHHhhhhHHhcCCCceEE
Confidence 678899999999999998888877766666554 789999999999865321 222222222221 2579
Q ss_pred EeecCCCCChHHHHHHhcc
Q 007334 271 AISAETGLGMTELYEALRP 289 (607)
Q Consensus 271 ~iSA~~g~gi~eL~~~i~~ 289 (607)
++||++|+|+++|++.|..
T Consensus 229 ~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 229 PVSALTGDGIDELLDMILL 247 (587)
T ss_pred EEECCCCCChHHHHHhhhh
Confidence 9999999999999999863
No 310
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.75 E-value=1.1e-17 Score=161.88 Aligned_cols=146 Identities=21% Similarity=0.264 Sum_probs=100.1
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
||+++|.+|||||||+++|++... ...+..++.+.....+.+.+ ..+.||||||..+.. .+ ...++
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~---------~~-~~~~~ 68 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTF--EPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFP---------AM-RKLSI 68 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC--CccCCCchhhheeEEEEECCEEEEEEEEECCCchhhh---------HH-HHHHh
Confidence 689999999999999999997642 23344555455555666777 467899999964431 11 22467
Q ss_pred hhccEEEEEeccchh-----------hHH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 404 MRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 404 ~~ad~~llViD~~~~-----------~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
..+|++|+|+|+++. ... ..++|+|+|+||+|+........ .+.. .+......+.+
T Consensus 69 ~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~-~~~~--------~~~~~~~~~~~ 139 (198)
T cd04147 69 QNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVP-AKDA--------LSTVELDWNCG 139 (198)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccccccccccc-HHHH--------HHHHHhhcCCc
Confidence 789999999999875 011 14799999999999975311110 0000 01111112468
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
++++||++|.|++++|+.+.+.+.
T Consensus 140 ~~~~Sa~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 140 FVETSAKDNENVLEVFKELLRQAN 163 (198)
T ss_pred EEEecCCCCCCHHHHHHHHHHHhh
Confidence 999999999999999999987653
No 311
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.75 E-value=8.1e-18 Score=164.76 Aligned_cols=155 Identities=17% Similarity=0.204 Sum_probs=101.4
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||++||.+|||||||+++|++.. + ...+..|..+.+...+.+++. .+.||||+|.... ...+ ..+
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~-f-~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~---------~~l~-~~~ 69 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDA-Y-PGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYY---------DNVR-PLA 69 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC-C-CCccCCccccceEEEEEECCEEEEEEEEeCCCcHHH---------HHHh-HHh
Confidence 589999999999999999999753 2 233433444444445666665 5668999995332 2122 246
Q ss_pred HhhccEEEEEeccchhh--------------HHhcCCcEEEEEeCccCCCCcCchHHHHHH-HHhcHHHHHhhCCCCCC-
Q 007334 403 LMRAHVVALVLDAEEVR--------------AVEEGRGLVVIVNKMDLLSGRQNSALYKRV-KEAVPQEIQTVIPQVTG- 466 (607)
Q Consensus 403 i~~ad~~llViD~~~~~--------------~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~- 466 (607)
++.+|++|+|+|.++.. ....+.|+|||+||+||.+........... ...+..+.++.++...+
T Consensus 70 ~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~ 149 (222)
T cd04173 70 YPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGA 149 (222)
T ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCC
Confidence 78999999999999860 112478999999999996532110000000 00122233333343345
Q ss_pred CCEEEcccCCCCC-HHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRG-RIAVMHQVIDTY 491 (607)
Q Consensus 467 ~~~v~iSA~~g~g-v~~l~~~i~~~~ 491 (607)
++++++||+++.| |+++|..++.+.
T Consensus 150 ~~y~E~SAk~~~~~V~~~F~~~~~~~ 175 (222)
T cd04173 150 VSYVECSSRSSERSVRDVFHVATVAS 175 (222)
T ss_pred CEEEEcCCCcCCcCHHHHHHHHHHHH
Confidence 4899999999985 999999887753
No 312
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.75 E-value=2.3e-17 Score=159.17 Aligned_cols=146 Identities=26% Similarity=0.378 Sum_probs=99.3
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeec---------------CCCCceeeeEEEEEEEcCeEEEEEecCCCccccccc
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVG---------------PEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEK 389 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~---------------~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~ 389 (607)
.+|+++|.+|||||||+++|++....... ...|+|.+.....+.+++..+.+|||||+.++.
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~--- 79 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFG--- 79 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHH---
Confidence 47999999999999999999963212111 235777777777778888999999999975431
Q ss_pred CcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHh
Q 007334 390 GPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQT 459 (607)
Q Consensus 390 ~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 459 (607)
.....+++.+|++++|+|+++. .....++|+++|+||+|+.... .....+.+.+.+ ..+..
T Consensus 80 -------~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~-~~~~~~~~~~~~-~~~~~ 150 (194)
T cd01891 80 -------GEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDAR-PEEVVDEVFDLF-IELGA 150 (194)
T ss_pred -------HHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCC-HHHHHHHHHHHH-HHhCC
Confidence 2344678899999999999873 1224689999999999997532 111222222111 01111
Q ss_pred hCCCCCCCCEEEcccCCCCCHHHH
Q 007334 460 VIPQVTGIPVVFTSALEGRGRIAV 483 (607)
Q Consensus 460 ~~~~~~~~~~v~iSA~~g~gv~~l 483 (607)
. ....+.+++++||++|.|+.++
T Consensus 151 ~-~~~~~~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 151 T-EEQLDFPVLYASAKNGWASLNL 173 (194)
T ss_pred c-cccCccCEEEeehhcccccccc
Confidence 0 1123579999999999998544
No 313
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.75 E-value=7.7e-18 Score=158.72 Aligned_cols=146 Identities=18% Similarity=0.195 Sum_probs=98.2
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceee-eEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRD-SVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~-~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
.+||+++|.+|||||||++++++.. +.+..+.+|+.+ .....+.+++ ..+.+|||+|..... ....
T Consensus 4 ~~kv~~vG~~~vGKTsli~~~~~~~-f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~----------~~~~ 72 (169)
T cd01892 4 VFLCFVLGAKGSGKSALLRAFLGRS-FSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAI----------LLND 72 (169)
T ss_pred EEEEEEECCCCCcHHHHHHHHhCCC-CCcccCCCccCcceEEEEEEECCeEEEEEEEecCCccccc----------ccch
Confidence 5799999999999999999999764 322444444433 3334455666 456799999964331 1123
Q ss_pred HHHhhccEEEEEeccchhh-------HH-----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC-
Q 007334 401 KNLMRAHVVALVLDAEEVR-------AV-----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI- 467 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~-------~~-----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 467 (607)
.+++.||++|+|+|++++. .. ..++|+++|+||+|+.+...... . ...++.+.+ +.
T Consensus 73 ~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~--~-----~~~~~~~~~----~~~ 141 (169)
T cd01892 73 AELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYE--V-----QPDEFCRKL----GLP 141 (169)
T ss_pred hhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccccccccc--c-----CHHHHHHHc----CCC
Confidence 4568899999999998861 11 13689999999999965421100 0 001222221 22
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+++++||++|.|++++|+.+.+.+
T Consensus 142 ~~~~~Sa~~~~~v~~lf~~l~~~~ 165 (169)
T cd01892 142 PPLHFSSKLGDSSNELFTKLATAA 165 (169)
T ss_pred CCEEEEeccCccHHHHHHHHHHHh
Confidence 468999999999999999988764
No 314
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.75 E-value=2.4e-17 Score=155.57 Aligned_cols=149 Identities=20% Similarity=0.234 Sum_probs=102.6
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
.++|+|+|.+|||||||+++|.+........ |.......+...+..+.+|||||.. ++......
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~------t~g~~~~~i~~~~~~~~~~D~~G~~----------~~~~~~~~ 77 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDISHITP------TQGFNIKTVQSDGFKLNVWDIGGQR----------AIRPYWRN 77 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCCcccCC------CCCcceEEEEECCEEEEEEECCCCH----------HHHHHHHH
Confidence 5789999999999999999999875432222 2222233455678899999999986 44455566
Q ss_pred HhhccCEEEEEEecCCCCCHhH--HHHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCC-------Cc
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLD--LEVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFG-------DP 269 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~--~~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~-------~~ 269 (607)
+++.+|++++|+|+++.....+ ..+...+... ..++|+++++||+|+..... ..... ..++.. ++
T Consensus 78 ~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~i~---~~l~~~~~~~~~~~~ 152 (173)
T cd04155 78 YFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAP--AEEIA---EALNLHDLRDRTWHI 152 (173)
T ss_pred HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCC--HHHHH---HHcCCcccCCCeEEE
Confidence 7899999999999987543332 1222222221 23689999999999875422 11111 122221 35
Q ss_pred EEeecCCCCChHHHHHHhcc
Q 007334 270 IAISAETGLGMTELYEALRP 289 (607)
Q Consensus 270 i~iSA~~g~gi~eL~~~i~~ 289 (607)
+++||++|+|+++++++|.+
T Consensus 153 ~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 153 QACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred EEeECCCCCCHHHHHHHHhc
Confidence 79999999999999999864
No 315
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.75 E-value=4.2e-17 Score=150.09 Aligned_cols=153 Identities=24% Similarity=0.301 Sum_probs=106.4
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
++|+++|.+|+|||||+|+|++.. ......++ +|.+.....+..++ ..+.+|||||+.. +.....
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~D~~G~~~----------~~~~~~ 68 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPG--TTRNYVTTVIEEDGKTYKFNLLDTAGQED----------YRAIRR 68 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCC--ceeeeeEEEEEECCEEEEEEEEECCCccc----------chHHHH
Confidence 589999999999999999999887 44444454 77887776677777 7899999999762 223334
Q ss_pred HHhhccCEEEEEEecCCC-CCHhHH--HHHHHHHhhCC-CCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeec
Q 007334 199 NVLAKTQFAIFMIDVRSG-LHPLDL--EVGKWLRKHAP-QIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISA 274 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~-~~~~~~--~~~~~l~~~~~-~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA 274 (607)
.....++.++.++|.... .+..+. .....+..... +.|+++|+||+|+.... ........+...+..+++++||
T Consensus 69 ~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~sa 146 (161)
T TIGR00231 69 LYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK--LKTHVAFLFAKLNGEPIIPLSA 146 (161)
T ss_pred HHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch--hhHHHHHHHhhccCCceEEeec
Confidence 455667777777777655 222221 22222322222 78999999999997643 1222333444455557899999
Q ss_pred CCCCChHHHHHHhc
Q 007334 275 ETGLGMTELYEALR 288 (607)
Q Consensus 275 ~~g~gi~eL~~~i~ 288 (607)
.+|.|+.++++.|.
T Consensus 147 ~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 147 ETGKNIDSAFKIVE 160 (161)
T ss_pred CCCCCHHHHHHHhh
Confidence 99999999999864
No 316
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.75 E-value=8.4e-18 Score=165.43 Aligned_cols=144 Identities=17% Similarity=0.185 Sum_probs=95.7
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCce-eeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLT-RDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT-~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
+||+++|.+|||||||+++|++.... ...++.+. .+.....+.+++ ..+.+|||||.... . ...
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~-~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~-----------~-~~~ 67 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYD-DHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMW-----------T-EDS 67 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcC-ccCcCCCccccceEEEEEECCEEEEEEEEeCCCcchH-----------H-HhH
Confidence 47999999999999999999865322 12222222 244444455544 56789999996310 0 112
Q ss_pred HHh-hccEEEEEeccchhh-----------HHh----cCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCC
Q 007334 402 NLM-RAHVVALVLDAEEVR-----------AVE----EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVT 465 (607)
Q Consensus 402 ~i~-~ad~~llViD~~~~~-----------~~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (607)
++. .+|++++|+|+++.. ... .++|+|+|+||+|+.+...... +..+.++...
T Consensus 68 ~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~-----------~~~~~~a~~~ 136 (221)
T cd04148 68 CMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSV-----------QEGRACAVVF 136 (221)
T ss_pred HhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecH-----------HHHHHHHHHc
Confidence 344 799999999999860 111 3689999999999976432111 1111111122
Q ss_pred CCCEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 466 GIPVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 466 ~~~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
+++++++||++|.|++++|+.+.+.+.
T Consensus 137 ~~~~~e~SA~~~~gv~~l~~~l~~~~~ 163 (221)
T cd04148 137 DCKFIETSAGLQHNVDELLEGIVRQIR 163 (221)
T ss_pred CCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 568999999999999999999987664
No 317
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.75 E-value=1.2e-17 Score=159.01 Aligned_cols=147 Identities=24% Similarity=0.290 Sum_probs=99.6
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
.||+++|.||||||||++++++.. . +..+.+++.+.....+.+++. .+.+|||||+.+. . .....+
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~-~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~---------~-~~~~~~ 69 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGH-F-VESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEY---------S-ILPQKY 69 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC-C-ccccCcchhhhEEEEEEECCEEEEEEEEECCChHhh---------H-HHHHHH
Confidence 589999999999999999999763 2 333444444433445555554 4679999996432 1 122346
Q ss_pred HhhccEEEEEeccchhh-----------H----HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEVR-----------A----VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~~-----------~----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
+..+|++++|+|+++.. . ...+.|+|+|+||+|+...+.... +.. ..+.+ ..+.
T Consensus 70 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~--~~~-----~~~~~----~~~~ 138 (180)
T cd04137 70 SIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVST--EEG-----KELAE----SWGA 138 (180)
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCH--HHH-----HHHHH----HcCC
Confidence 66899999999998751 1 123679999999999875322111 011 11111 1246
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTYQKW 494 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~~~~ 494 (607)
+++++||++|.|+.+++.++.+.+...
T Consensus 139 ~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 165 (180)
T cd04137 139 AFLESSARENENVEEAFELLIEEIEKV 165 (180)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 899999999999999999998766543
No 318
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.75 E-value=2.5e-18 Score=149.33 Aligned_cols=149 Identities=23% Similarity=0.190 Sum_probs=112.7
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
++..|+|.|+||||+|+-++... .+.-+.+..+..|.....++++|. +++||||||..++ . ..+-.+
T Consensus 9 fkllIigDsgVGKssLl~rF~dd-tFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErF---------r-titsty 77 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADD-TFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERF---------R-TITSTY 77 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhc-ccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHH---------H-HHHHHH
Confidence 57889999999999999999844 455555556677888777887775 5679999996444 2 234468
Q ss_pred HhhccEEEEEeccchhh----------HH---hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCE
Q 007334 403 LMRAHVVALVLDAEEVR----------AV---EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPV 469 (607)
Q Consensus 403 i~~ad~~llViD~~~~~----------~~---~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (607)
+++.|++++|||+++++ .. ....|-|+|+||.|+.+.+ .+..+..+.++...++.+
T Consensus 78 yrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~Rr-----------vV~t~dAr~~A~~mgie~ 146 (198)
T KOG0079|consen 78 YRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERR-----------VVDTEDARAFALQMGIEL 146 (198)
T ss_pred ccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccce-----------eeehHHHHHHHHhcCchh
Confidence 88999999999999871 11 1357889999999988752 233344445555568899
Q ss_pred EEcccCCCCCHHHHHHHHHHHHHHHh
Q 007334 470 VFTSALEGRGRIAVMHQVIDTYQKWC 495 (607)
Q Consensus 470 v~iSA~~g~gv~~l~~~i~~~~~~~~ 495 (607)
|++|||...|++..|..|.+...+..
T Consensus 147 FETSaKe~~NvE~mF~cit~qvl~~k 172 (198)
T KOG0079|consen 147 FETSAKENENVEAMFHCITKQVLQAK 172 (198)
T ss_pred eehhhhhcccchHHHHHHHHHHHHHH
Confidence 99999999999999999988765544
No 319
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.75 E-value=1.8e-17 Score=158.97 Aligned_cols=156 Identities=15% Similarity=0.156 Sum_probs=106.1
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
+|+|+|.+|||||||+++|....... .... +..+.....+.+.+ ..+.+|||+|+.... .....
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~----------~~~~~ 68 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEFPE--EYHP--TVFENYVTDCRVDGKPVQLALWDTAGQEEYE----------RLRPL 68 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCc--ccCC--cccceEEEEEEECCEEEEEEEEECCCChhcc----------ccchh
Confidence 79999999999999999998654321 1111 23333333444444 458899999987321 11223
Q ss_pred HhhccCEEEEEEecCCCCCHhHH--HHHHHHHhhCCCCcEEEEecCCCcccC----------CcCcHHHHHHHHHhcCCC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHN----------GTGSLAGAAAESLMLGFG 267 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~D~~~~----------~~~~~~~~~~~~~~~~~~ 267 (607)
.+..+|++++|+|+++..+..+. .+...++...++.|+++|+||+|+... +....+.........+..
T Consensus 69 ~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (187)
T cd04129 69 SYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAK 148 (187)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCc
Confidence 56889999999999876655543 244555555567999999999998542 112223333444556655
Q ss_pred CcEEeecCCCCChHHHHHHhccch
Q 007334 268 DPIAISAETGLGMTELYEALRPSV 291 (607)
Q Consensus 268 ~~i~iSA~~g~gi~eL~~~i~~~l 291 (607)
+++++||++|.|++++++.+.+.+
T Consensus 149 ~~~e~Sa~~~~~v~~~f~~l~~~~ 172 (187)
T cd04129 149 KYMECSALTGEGVDDVFEAATRAA 172 (187)
T ss_pred EEEEccCCCCCCHHHHHHHHHHHH
Confidence 789999999999999999998654
No 320
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.75 E-value=2e-17 Score=154.27 Aligned_cols=156 Identities=22% Similarity=0.290 Sum_probs=116.5
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
+|+++|.++||||||++++.+..+. ..... +...+.....+...+ ..+.+|||+|.. ++......
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~--~~~~~-t~~~~~~~~~~~~~~~~~~l~i~D~~g~~----------~~~~~~~~ 67 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFP--ENYIP-TIGIDSYSKEVSIDGKPVNLEIWDTSGQE----------RFDSLRDI 67 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTT--SSSET-TSSEEEEEEEEEETTEEEEEEEEEETTSG----------GGHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHhhccc--ccccc-ccccccccccccccccccccccccccccc----------cccccccc
Confidence 6899999999999999999987642 11111 122455555555544 469999999987 33344456
Q ss_pred HhhccCEEEEEEecCCCCCHhHHH-HHHHHHhhCC-CCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKHAP-QIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETG 277 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~~~-~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g 277 (607)
.+..+|++++|+|.+++.+..... +...+....+ +.|+++|+||+|+...+....++....+..++. +++++||+++
T Consensus 68 ~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~-~~~e~Sa~~~ 146 (162)
T PF00071_consen 68 FYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGV-PYFEVSAKNG 146 (162)
T ss_dssp HHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTS-EEEEEBTTTT
T ss_pred cccccccccccccccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCC-EEEEEECCCC
Confidence 789999999999998876666532 3444444444 689999999999988666666666667777784 8899999999
Q ss_pred CChHHHHHHhccch
Q 007334 278 LGMTELYEALRPSV 291 (607)
Q Consensus 278 ~gi~eL~~~i~~~l 291 (607)
.|+.+++..+.+.+
T Consensus 147 ~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 147 ENVKEIFQELIRKI 160 (162)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999988655
No 321
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.75 E-value=7.6e-18 Score=155.55 Aligned_cols=142 Identities=22% Similarity=0.233 Sum_probs=96.8
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEc--CeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQ--GRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||+|++++...... ..+.++.+.....+..+ ...+.+|||||..... .....+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~----------~~~~~~ 69 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDEN-YKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFR----------SITPSY 69 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCc-cCCceeeeeEEEEEEECCEEEEEEEEecCChHHHH----------HHHHHH
Confidence 4799999999999999999997753332 33344444444444443 4578899999963321 234567
Q ss_pred HhhccEEEEEeccchh-----------hHHh---cCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV-----------RAVE---EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 403 i~~ad~~llViD~~~~-----------~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
++.+|++++|+|+++. .... .++|+++++||+|+....... .+.+.+ +.. ..+.+
T Consensus 70 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~-----~~~----~~~~~ 138 (159)
T cd00154 70 YRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVS--TEEAQQ-----FAK----ENGLL 138 (159)
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccccccccc--HHHHHH-----HHH----HcCCe
Confidence 7889999999999875 1111 358999999999996322111 111111 111 13678
Q ss_pred EEEcccCCCCCHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVI 488 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~ 488 (607)
++++||++|.|++++++.|.
T Consensus 139 ~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 139 FFETSAKTGENVEELFQSLA 158 (159)
T ss_pred EEEEecCCCCCHHHHHHHHh
Confidence 99999999999999998875
No 322
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.75 E-value=3.3e-18 Score=168.42 Aligned_cols=145 Identities=28% Similarity=0.320 Sum_probs=113.5
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCccc-ccccCcchhHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQR-EKEKGPASLSVMQSRKN 402 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~-~~~~~~~~~~~~~~~~~ 402 (607)
..+|++||.||||||||+|+|++. .+.+.++++||..++.+.++|+|.+++|+|+||+... ....+.. .+....
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt-~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG----~~vlsv 137 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNT-KSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRG----RQVLSV 137 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCC-CccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCc----ceeeee
Confidence 368999999999999999999987 4889999999999999999999999999999999877 2222211 223456
Q ss_pred HhhccEEEEEeccchh----------------------------------------------------------------
Q 007334 403 LMRAHVVALVLDAEEV---------------------------------------------------------------- 418 (607)
Q Consensus 403 i~~ad~~llViD~~~~---------------------------------------------------------------- 418 (607)
++.||++++|+|+...
T Consensus 138 ~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~ 217 (365)
T COG1163 138 ARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNAD 217 (365)
T ss_pred eccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccce
Confidence 6789999999999743
Q ss_pred -------------hHH---hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHH
Q 007334 419 -------------RAV---EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIA 482 (607)
Q Consensus 419 -------------~~~---~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~ 482 (607)
... ...+|+++|+||+|+...+. ++.+ .+ ...++++||++|.|+++
T Consensus 218 V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~----~~~l--------~~------~~~~v~isa~~~~nld~ 279 (365)
T COG1163 218 VLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEE----LERL--------AR------KPNSVPISAKKGINLDE 279 (365)
T ss_pred EEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCHHH----HHHH--------Hh------ccceEEEecccCCCHHH
Confidence 001 12589999999999987421 1221 11 12789999999999999
Q ss_pred HHHHHHHHH
Q 007334 483 VMHQVIDTY 491 (607)
Q Consensus 483 l~~~i~~~~ 491 (607)
|.+.+++.+
T Consensus 280 L~e~i~~~L 288 (365)
T COG1163 280 LKERIWDVL 288 (365)
T ss_pred HHHHHHHhh
Confidence 999888754
No 323
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.75 E-value=1.5e-17 Score=154.68 Aligned_cols=144 Identities=21% Similarity=0.228 Sum_probs=96.9
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||+|+|++.... ....+.++.+.....+.+.+. .+.+|||||.... . .....+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~---------~-~~~~~~ 69 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFN-EKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERY---------H-ALGPIY 69 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-CCcCCccceeEEEEEEEECCEEEEEEEEECCchHHH---------H-HhhHHH
Confidence 48999999999999999999976432 223333444444445555554 5779999995322 1 112345
Q ss_pred HhhccEEEEEeccchhhH--------------HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEVRA--------------VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 403 i~~ad~~llViD~~~~~~--------------~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
+..+|++++|+|+++... ...++|+++|+||+|+........ +.+. +..+ ..+.+
T Consensus 70 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~--~~~~-----~~~~----~~~~~ 138 (162)
T cd04123 70 YRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSK--SEAE-----EYAK----SVGAK 138 (162)
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCH--HHHH-----HHHH----HcCCE
Confidence 678999999999987610 112689999999999975432111 1110 1111 12568
Q ss_pred EEEcccCCCCCHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
++++||++|.|++++++++.+.
T Consensus 139 ~~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 139 HFETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred EEEEeCCCCCCHHHHHHHHHHH
Confidence 9999999999999999998764
No 324
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.75 E-value=9.4e-18 Score=153.14 Aligned_cols=133 Identities=22% Similarity=0.225 Sum_probs=86.1
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhh
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMR 405 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ 405 (607)
||+++|++|||||||+|+|++.... +..|. .+++.+ .+|||||..... .+.+ .....++++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~----~~~t~------~~~~~~---~~iDt~G~~~~~----~~~~--~~~~~~~~~ 62 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL----YKKTQ------AVEYND---GAIDTPGEYVEN----RRLY--SALIVTAAD 62 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc----cccce------eEEEcC---eeecCchhhhhh----HHHH--HHHHHHhhc
Confidence 7999999999999999999977431 12111 123333 689999963110 1112 112245789
Q ss_pred ccEEEEEeccchh------hH-HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCC
Q 007334 406 AHVVALVLDAEEV------RA-VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGR 478 (607)
Q Consensus 406 ad~~llViD~~~~------~~-~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~ 478 (607)
||++++|+|++++ .. .....|+++|+||+|+.+.....+..+ +..+. ....+++++||++|.
T Consensus 63 ad~vilv~d~~~~~s~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~--------~~~~~---~~~~~~~~~Sa~~~~ 131 (142)
T TIGR02528 63 ADVIALVQSATDPESRFPPGFASIFVKPVIGLVTKIDLAEADVDIERAK--------ELLET---AGAEPIFEISSVDEQ 131 (142)
T ss_pred CCEEEEEecCCCCCcCCChhHHHhccCCeEEEEEeeccCCcccCHHHHH--------HHHHH---cCCCcEEEEecCCCC
Confidence 9999999999876 11 112469999999999975321111111 11111 123489999999999
Q ss_pred CHHHHHHHHH
Q 007334 479 GRIAVMHQVI 488 (607)
Q Consensus 479 gv~~l~~~i~ 488 (607)
|++++|+.+.
T Consensus 132 gi~~l~~~l~ 141 (142)
T TIGR02528 132 GLEALVDYLN 141 (142)
T ss_pred CHHHHHHHHh
Confidence 9999998763
No 325
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.75 E-value=1.8e-17 Score=162.50 Aligned_cols=166 Identities=21% Similarity=0.243 Sum_probs=121.2
Q ss_pred ccccCCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCee-EEEecCCCCccccCchhHHHHH
Q 007334 115 IDINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLR-FKVLDSAGLETEATSGSILDRT 193 (607)
Q Consensus 115 ~~~~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~-~~liDTpG~~~~~~~~~~~~~~ 193 (607)
...+.++.|.+||.||+|||||+|+|+..+. .+.++++ ||.....+.+.+++.. +.+-|.||++.....+.-+.
T Consensus 191 lELKsiadvGLVG~PNAGKSTLL~als~AKp-kVa~YaF--TTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG-- 265 (366)
T KOG1489|consen 191 LELKSIADVGLVGFPNAGKSTLLNALSRAKP-KVAHYAF--TTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLG-- 265 (366)
T ss_pred EEeeeecccceecCCCCcHHHHHHHhhccCC-cccccce--eeeccccceeeccccceeEeccCccccccccccCccc--
Confidence 4445578999999999999999999999876 4677777 9999999988887655 99999999997665432211
Q ss_pred HHHHHHHhhccCEEEEEEecCCC---CCHhHHH-HH---HHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCC
Q 007334 194 AGMTANVLAKTQFAIFMIDVRSG---LHPLDLE-VG---KWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGF 266 (607)
Q Consensus 194 ~~~~~~~~~~ad~vl~VvD~s~~---~~~~~~~-~~---~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~ 266 (607)
..-+..++.|+.++||+|++.+ ..-++.+ +. +.+++...++|.++|+||+|+.+.+. ......+..+.-
T Consensus 266 -~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~---~~l~~L~~~lq~ 341 (366)
T KOG1489|consen 266 -YKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEK---NLLSSLAKRLQN 341 (366)
T ss_pred -HHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHH---HHHHHHHHHcCC
Confidence 2235678899999999999987 2222222 22 22333345789999999999864321 111333444554
Q ss_pred CCcEEeecCCCCChHHHHHHhcc
Q 007334 267 GDPIAISAETGLGMTELYEALRP 289 (607)
Q Consensus 267 ~~~i~iSA~~g~gi~eL~~~i~~ 289 (607)
+.++++||++|+|+.+|++.|.+
T Consensus 342 ~~V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 342 PHVVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred CcEEEeeeccccchHHHHHHHhh
Confidence 45899999999999999998764
No 326
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.75 E-value=3.7e-18 Score=160.59 Aligned_cols=153 Identities=19% Similarity=0.216 Sum_probs=96.0
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||+++|++... ...+..+..+.....+...+ ..+.+|||||+.+... .....
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~----------~~~~~ 68 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKF--PTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDR----------LRPLS 68 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccc----------cchhh
Confidence 5899999999999999999997743 12233334444444444444 4678999999754311 01124
Q ss_pred HhhccEEEEEeccchh--------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHh-hCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV--------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQT-VIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~--------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 467 (607)
++.+|++++|+|+++. .....++|+++|+||+|+.+..............+..+... ........
T Consensus 69 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 148 (171)
T cd00157 69 YPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAI 148 (171)
T ss_pred cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCe
Confidence 4679999999999874 01123699999999999986542210000000000001111 11111233
Q ss_pred CEEEcccCCCCCHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVID 489 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~ 489 (607)
+++++||++|.|++++++.|.+
T Consensus 149 ~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 149 GYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred EEEEeecCCCCCHHHHHHHHhh
Confidence 8999999999999999998865
No 327
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.75 E-value=2.7e-17 Score=185.89 Aligned_cols=153 Identities=24% Similarity=0.294 Sum_probs=117.0
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
..|+|+|+|++|+|||||+++|.+.++. ....++ .|.+.....+.+.+..+.||||||+. .|..+..
T Consensus 289 R~pvV~ImGhvd~GKTSLl~~Lr~~~v~-~~e~~G--IT~~iga~~v~~~~~~ItfiDTPGhe----------~F~~m~~ 355 (787)
T PRK05306 289 RPPVVTIMGHVDHGKTSLLDAIRKTNVA-AGEAGG--ITQHIGAYQVETNGGKITFLDTPGHE----------AFTAMRA 355 (787)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcc-ccccCc--eeeeccEEEEEECCEEEEEEECCCCc----------cchhHHH
Confidence 3689999999999999999999876653 233344 77777777778888999999999998 3444555
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHh-------cC-CCCcE
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLM-------LG-FGDPI 270 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~-------~~-~~~~i 270 (607)
..+..+|++|+|+|+.++...+..+.+.++... +.|+|+|+||+|+..... ......+.. .+ ..+++
T Consensus 356 rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~--~vPiIVviNKiDl~~a~~---e~V~~eL~~~~~~~e~~g~~vp~v 430 (787)
T PRK05306 356 RGAQVTDIVVLVVAADDGVMPQTIEAINHAKAA--GVPIIVAINKIDKPGANP---DRVKQELSEYGLVPEEWGGDTIFV 430 (787)
T ss_pred hhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhc--CCcEEEEEECccccccCH---HHHHHHHHHhcccHHHhCCCceEE
Confidence 678889999999999999888877766666655 789999999999965321 111111111 11 12689
Q ss_pred EeecCCCCChHHHHHHhcc
Q 007334 271 AISAETGLGMTELYEALRP 289 (607)
Q Consensus 271 ~iSA~~g~gi~eL~~~i~~ 289 (607)
++||++|.|+++|++.|..
T Consensus 431 pvSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 431 PVSAKTGEGIDELLEAILL 449 (787)
T ss_pred EEeCCCCCCchHHHHhhhh
Confidence 9999999999999999874
No 328
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.74 E-value=1.2e-17 Score=155.68 Aligned_cols=138 Identities=17% Similarity=0.167 Sum_probs=92.6
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||+.+++..... ..++.+ .......+.+++. .+.+|||+|... ..+
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~--~~~~~~-~~~~~~~i~~~~~~~~l~i~D~~g~~~---------------~~~ 62 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYV--QLESPE-GGRFKKEVLVDGQSHLLLIRDEGGAPD---------------AQF 62 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCC--CCCCCC-ccceEEEEEECCEEEEEEEEECCCCCc---------------hhH
Confidence 47999999999999999999865321 223322 2233355677774 577999999531 134
Q ss_pred HhhccEEEEEeccchhh-------------HHh--cCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCC-CCCC
Q 007334 403 LMRAHVVALVLDAEEVR-------------AVE--EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIP-QVTG 466 (607)
Q Consensus 403 i~~ad~~llViD~~~~~-------------~~~--~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 466 (607)
++.+|++++|+|.++.. ... .+.|+++|+||+|+....... +..+..+.++ ....
T Consensus 63 ~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~---------v~~~~~~~~~~~~~~ 133 (158)
T cd04103 63 ASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRV---------IDDARARQLCADMKR 133 (158)
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcc---------cCHHHHHHHHHHhCC
Confidence 56799999999999860 111 357999999999985321110 1111111111 1224
Q ss_pred CCEEEcccCCCCCHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVID 489 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~ 489 (607)
+++++|||++|.||+++|..+.+
T Consensus 134 ~~~~e~SAk~~~~i~~~f~~~~~ 156 (158)
T cd04103 134 CSYYETCATYGLNVERVFQEAAQ 156 (158)
T ss_pred CcEEEEecCCCCCHHHHHHHHHh
Confidence 68999999999999999998875
No 329
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.74 E-value=1.8e-17 Score=153.24 Aligned_cols=150 Identities=17% Similarity=0.141 Sum_probs=100.5
Q ss_pred EEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHhh
Q 007334 123 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVLA 202 (607)
Q Consensus 123 V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 202 (607)
|+|+|++|||||||+|+|++..+.. ...|. +. .....+..++..+.+|||||+. ++......++.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~-~~~~t--~~--~~~~~~~~~~~~~~~~D~~g~~----------~~~~~~~~~~~ 66 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSE-DTIPT--VG--FNMRKVTKGNVTLKVWDLGGQP----------RFRSMWERYCR 66 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCc-CccCC--CC--cceEEEEECCEEEEEEECCCCH----------hHHHHHHHHHh
Confidence 8999999999999999999876531 11221 22 2223344567889999999987 45556677889
Q ss_pred ccCEEEEEEecCCCCCHhH--HHHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHH--hcC--CCCcEEeecC
Q 007334 203 KTQFAIFMIDVRSGLHPLD--LEVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESL--MLG--FGDPIAISAE 275 (607)
Q Consensus 203 ~ad~vl~VvD~s~~~~~~~--~~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~--~~~--~~~~i~iSA~ 275 (607)
.+|++++|+|+++...... ..+..++... ..++|+++|+||+|+..... ......... ... ..+++++||+
T Consensus 67 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~ 144 (159)
T cd04159 67 GVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS--VDELIEQMNLKSITDREVSCYSISCK 144 (159)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC--HHHHHHHhCcccccCCceEEEEEEec
Confidence 9999999999987544332 1122222221 24689999999999875432 111111111 011 1256999999
Q ss_pred CCCChHHHHHHhcc
Q 007334 276 TGLGMTELYEALRP 289 (607)
Q Consensus 276 ~g~gi~eL~~~i~~ 289 (607)
+|.|+++++++|.+
T Consensus 145 ~~~gi~~l~~~l~~ 158 (159)
T cd04159 145 EKTNIDIVLDWLIK 158 (159)
T ss_pred cCCChHHHHHHHhh
Confidence 99999999998864
No 330
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.74 E-value=2.4e-17 Score=155.58 Aligned_cols=144 Identities=22% Similarity=0.283 Sum_probs=98.6
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
.++|+++|++|||||||++++.+.......+..|.+. ..+.+++..+.+|||||..+.. .....++
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~----~~i~~~~~~~~~~D~~G~~~~~----------~~~~~~~ 79 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDISHITPTQGFNI----KTVQSDGFKLNVWDIGGQRAIR----------PYWRNYF 79 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcce----EEEEECCEEEEEEECCCCHHHH----------HHHHHHh
Confidence 5899999999999999999999875444444445433 2455678899999999964321 1233566
Q ss_pred hhccEEEEEeccchhh---------------HHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 404 MRAHVVALVLDAEEVR---------------AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 404 ~~ad~~llViD~~~~~---------------~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
..+|++++|+|+++.. ....++|+++++||+|+.+.....+ +.+.+. +... .....+
T Consensus 80 ~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~----i~~~l~--~~~~--~~~~~~ 151 (173)
T cd04155 80 ENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEE----IAEALN--LHDL--RDRTWH 151 (173)
T ss_pred cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHH----HHHHcC--Cccc--CCCeEE
Confidence 7899999999998640 1124689999999999876432211 111110 0000 011235
Q ss_pred EEEcccCCCCCHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVID 489 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~ 489 (607)
++++||++|+|++++|++|.+
T Consensus 152 ~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 152 IQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred EEEeECCCCCCHHHHHHHHhc
Confidence 789999999999999998864
No 331
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.74 E-value=2.8e-17 Score=157.19 Aligned_cols=146 Identities=16% Similarity=0.165 Sum_probs=99.4
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
.++|+++|.+|||||||+|++.+.....+.+ |..+....+.+++.++.+|||||..... .....++
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~G~~~~~----------~~~~~~~ 82 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRLAQHQP----TQHPTSEELAIGNIKFTTFDLGGHQQAR----------RLWKDYF 82 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCCcccCC----ccccceEEEEECCEEEEEEECCCCHHHH----------HHHHHHh
Confidence 4799999999999999999999864333322 3333344556778899999999964321 1234677
Q ss_pred hhccEEEEEeccchh-----------hH----HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhC-----CC
Q 007334 404 MRAHVVALVLDAEEV-----------RA----VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVI-----PQ 463 (607)
Q Consensus 404 ~~ad~~llViD~~~~-----------~~----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 463 (607)
..+|++++|+|+++. .. ...++|+++|+||+|+.......+ +.+.+. +.+.. ..
T Consensus 83 ~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~----i~~~l~--l~~~~~~~~~~~ 156 (184)
T smart00178 83 PEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDE----LRYALG--LTNTTGSKGKVG 156 (184)
T ss_pred CCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHH----HHHHcC--CCcccccccccC
Confidence 899999999999875 01 124789999999999865422221 222111 00000 01
Q ss_pred CCCCCEEEcccCCCCCHHHHHHHHHH
Q 007334 464 VTGIPVVFTSALEGRGRIAVMHQVID 489 (607)
Q Consensus 464 ~~~~~~v~iSA~~g~gv~~l~~~i~~ 489 (607)
.....++++||++|.|++++++++..
T Consensus 157 ~~~~~i~~~Sa~~~~g~~~~~~wl~~ 182 (184)
T smart00178 157 VRPLEVFMCSVVRRMGYGEGFKWLSQ 182 (184)
T ss_pred CceeEEEEeecccCCChHHHHHHHHh
Confidence 12346999999999999999998864
No 332
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.74 E-value=2e-17 Score=183.77 Aligned_cols=157 Identities=20% Similarity=0.175 Sum_probs=119.3
Q ss_pred EEEEecCCCCchhHHHHHhhccceee--eccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREAL--VYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~--v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
.|+++|++|+|||||+|+|++..... ....++ +|.+..+..+.+.+..+.+|||||+. ++...+..
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rG--iTid~~~~~~~~~~~~v~~iDtPGhe----------~f~~~~~~ 69 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRG--MTIDLGFAYFPLPDYRLGFIDVPGHE----------KFISNAIA 69 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCC--ceEEeEEEEEEeCCEEEEEEECCCHH----------HHHHHHHh
Confidence 69999999999999999999754211 112344 88888888888888999999999987 66677778
Q ss_pred HhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCc-EEEEecCCCcccCCcCc--HHHHHHHHHhcCC---CCcEEee
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIK-PIVAMNKCESLHNGTGS--LAGAAAESLMLGF---GDPIAIS 273 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p-~ilV~NK~D~~~~~~~~--~~~~~~~~~~~~~---~~~i~iS 273 (607)
.+..+|++++|+|++++...+..+...++... ++| +|+|+||+|+.+..... ..+....+...++ .+++++|
T Consensus 70 g~~~aD~aILVVDa~~G~~~qT~ehl~il~~l--gi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vS 147 (581)
T TIGR00475 70 GGGGIDAALLVVDADEGVMTQTGEHLAVLDLL--GIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTS 147 (581)
T ss_pred hhccCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEe
Confidence 88999999999999998888777766777665 677 99999999997642211 1111222223332 3789999
Q ss_pred cCCCCChHHHHHHhccchH
Q 007334 274 AETGLGMTELYEALRPSVE 292 (607)
Q Consensus 274 A~~g~gi~eL~~~i~~~l~ 292 (607)
|++|+|++++++.|...+.
T Consensus 148 A~tG~GI~eL~~~L~~l~~ 166 (581)
T TIGR00475 148 AKTGQGIGELKKELKNLLE 166 (581)
T ss_pred CCCCCCchhHHHHHHHHHH
Confidence 9999999999998876554
No 333
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.74 E-value=4e-17 Score=157.45 Aligned_cols=156 Identities=21% Similarity=0.221 Sum_probs=103.6
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCC-ceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccc-cCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQED-RVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKE-KGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~-~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~-~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++.. ...+++.+|+|++..... + +.++.||||||+...... ...+.+. ....
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~-~~~l~l~DtpG~~~~~~~~~~~~~~~-~~~~ 98 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE--V-NDKLRLVDLPGYGYAKVSKEEKEKWQ-KLIE 98 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe--c-CCeEEEeCCCCCCCcCCCchHHHHHH-HHHH
Confidence 45799999999999999999999864 466778889887754332 2 478999999997543111 1111111 1112
Q ss_pred HHHh---hccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 401 KNLM---RAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 401 ~~i~---~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
.++. .++++++|+|++.+ .....++|+++++||+|+.+........+. +...+... ..
T Consensus 99 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~--------i~~~l~~~-~~ 169 (196)
T PRK00454 99 EYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKK--------VRKALKFG-DD 169 (196)
T ss_pred HHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHH--------HHHHHHhc-CC
Confidence 2333 45788999997764 112357899999999999765322111111 22222111 46
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+++++||++|.|++++++.+.+.+
T Consensus 170 ~~~~~Sa~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 170 EVILFSSLKKQGIDELRAAIAKWL 193 (196)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHh
Confidence 899999999999999998887654
No 334
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.74 E-value=1.8e-17 Score=159.15 Aligned_cols=147 Identities=16% Similarity=0.198 Sum_probs=99.4
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
..+|+++|++|||||||+++|.+.......+ |.......+.+++..+.+|||||..+.. .....++
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~----T~~~~~~~i~~~~~~~~l~D~~G~~~~~----------~~~~~~~ 84 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDRLAQHVP----TLHPTSEELTIGNIKFKTFDLGGHEQAR----------RLWKDYF 84 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCcccCC----ccCcceEEEEECCEEEEEEECCCCHHHH----------HHHHHHh
Confidence 4799999999999999999999765322222 2333345667788999999999954321 1234577
Q ss_pred hhccEEEEEeccchh-----------hHH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhC-------
Q 007334 404 MRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVI------- 461 (607)
Q Consensus 404 ~~ad~~llViD~~~~-----------~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~------- 461 (607)
+.+|++++|+|+++. ... ..+.|+++++||+|+...... +.+...+.. ....
T Consensus 85 ~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~----~~~~~~~~~--~~~~~~~~~~~ 158 (190)
T cd00879 85 PEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSE----EELRQALGL--YGTTTGKGVSL 158 (190)
T ss_pred ccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCH----HHHHHHhCc--ccccccccccc
Confidence 899999999999874 111 246899999999998653221 111111110 0000
Q ss_pred --CCCCCCCEEEcccCCCCCHHHHHHHHHHH
Q 007334 462 --PQVTGIPVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 462 --~~~~~~~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
......+++++||++|+|++++|+.+.+.
T Consensus 159 ~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 159 KVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred cccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 01123568999999999999999988653
No 335
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.74 E-value=1.4e-17 Score=154.62 Aligned_cols=142 Identities=25% Similarity=0.260 Sum_probs=100.6
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
||+++|++|||||||++++++.. ....+..++.+.....+..++ ..+.+|||||..+. . ......+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~---------~-~~~~~~~ 68 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT--FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEF---------S-AMRDLYI 68 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHH---------H-HHHHHHH
Confidence 58999999999999999999764 455566666666666666664 46789999996432 1 1233567
Q ss_pred hhccEEEEEeccchhh-------------HHh--cCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 404 MRAHVVALVLDAEEVR-------------AVE--EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 404 ~~ad~~llViD~~~~~-------------~~~--~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
..+|++++|+|.++.. ... .++|+++|+||+|+....... .+... .+.. ..+.+
T Consensus 69 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~-----~~~~----~~~~~ 137 (160)
T cd00876 69 RQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVS--KEEGK-----ALAK----EWGCP 137 (160)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceec--HHHHH-----HHHH----HcCCc
Confidence 7899999999998751 111 379999999999997632211 11111 1111 11368
Q ss_pred EEEcccCCCCCHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
++++||++|.|++++++.|.+.
T Consensus 138 ~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 138 FIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred EEEeccCCCCCHHHHHHHHHhh
Confidence 9999999999999999988753
No 336
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.74 E-value=3.1e-17 Score=154.05 Aligned_cols=147 Identities=19% Similarity=0.219 Sum_probs=95.5
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEE--cCeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEY--QGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||+|+|.+.... ..++.++ +.......+ .+..+.+|||||..+.. .....+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~~~ 67 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFP--ENVPRVL-PEITIPADVTPERVPTTIVDTSSRPQDR----------ANLAAE 67 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCC--ccCCCcc-cceEeeeeecCCeEEEEEEeCCCchhhh----------HHHhhh
Confidence 38999999999999999999976432 2344332 222222233 34578899999964321 122345
Q ss_pred HhhccEEEEEeccchh----h----------HHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV----R----------AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 403 i~~ad~~llViD~~~~----~----------~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
+..+|++++|+|++++ . ....+.|+++|+||+|+.+........+.+ . .+...+.. ..+
T Consensus 68 ~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~-~----~~~~~~~~--~~~ 140 (166)
T cd01893 68 IRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEM-L----PIMNEFRE--IET 140 (166)
T ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHH-H----HHHHHHhc--ccE
Confidence 6889999999999875 0 012368999999999997653211111111 0 11111111 137
Q ss_pred EEEcccCCCCCHHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
++++||++|.|++++|+.+.+..
T Consensus 141 ~~e~Sa~~~~~v~~lf~~~~~~~ 163 (166)
T cd01893 141 CVECSAKTLINVSEVFYYAQKAV 163 (166)
T ss_pred EEEeccccccCHHHHHHHHHHHh
Confidence 99999999999999999887653
No 337
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.74 E-value=2e-17 Score=163.82 Aligned_cols=144 Identities=27% Similarity=0.313 Sum_probs=108.3
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhh
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMR 405 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ 405 (607)
+|+++|.||||||||+|+|++.. ..+.+++++|.++..+.+.+++..+++|||||+.+.... .. -...+...+++.
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~-~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~-~~--~~~~~~l~~~~~ 77 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK-SEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAAD-GK--GRGRQVIAVART 77 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-ccccCCCCccccceEEEEEECCeEEEEEECCCccccccc-ch--hHHHHHHHhhcc
Confidence 68999999999999999999874 567889999999999999999999999999998654211 11 111234567889
Q ss_pred ccEEEEEeccchhh------------------------------------------------------------------
Q 007334 406 AHVVALVLDAEEVR------------------------------------------------------------------ 419 (607)
Q Consensus 406 ad~~llViD~~~~~------------------------------------------------------------------ 419 (607)
+|++++|+|+++..
T Consensus 78 ad~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~ 157 (233)
T cd01896 78 ADLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLI 157 (233)
T ss_pred CCEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEE
Confidence 99999999986530
Q ss_pred -----------HHh---cCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHHHH
Q 007334 420 -----------AVE---EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMH 485 (607)
Q Consensus 420 -----------~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~ 485 (607)
... ..+|+++|+||+|+..... . . .++. ..+++++||++|.|++++++
T Consensus 158 ~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~-------~--------~-~~~~--~~~~~~~SA~~g~gi~~l~~ 219 (233)
T cd01896 158 REDITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEE-------L--------D-LLAR--QPNSVVISAEKGLNLDELKE 219 (233)
T ss_pred ccCCCHHHHHHHHhCCceEeeEEEEEECccCCCHHH-------H--------H-HHhc--CCCEEEEcCCCCCCHHHHHH
Confidence 001 2369999999999975411 0 0 1111 24689999999999999999
Q ss_pred HHHHHH
Q 007334 486 QVIDTY 491 (607)
Q Consensus 486 ~i~~~~ 491 (607)
.+.+.+
T Consensus 220 ~i~~~L 225 (233)
T cd01896 220 RIWDKL 225 (233)
T ss_pred HHHHHh
Confidence 887743
No 338
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.74 E-value=3.9e-18 Score=150.26 Aligned_cols=146 Identities=17% Similarity=0.156 Sum_probs=108.6
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.+||.++|.+|||||||+-+++... +....-..+..|.....+.++|. ++-||||||+.+++ ..+-.
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~-fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFR----------tLTpS 79 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNT-FDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFR----------TLTPS 79 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcc-cCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhh----------ccCHh
Confidence 4899999999999999999998542 22211222456777778888877 45699999977664 12346
Q ss_pred HHhhccEEEEEeccchhh---------------HHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEVR---------------AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~~---------------~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
++++|.++|+|||++... ....++-.++|+||+|...+ +.+..+.+..++....
T Consensus 80 yyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~-----------R~V~reEG~kfAr~h~ 148 (209)
T KOG0080|consen 80 YYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESE-----------RVVDREEGLKFARKHR 148 (209)
T ss_pred HhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhc-----------ccccHHHHHHHHHhhC
Confidence 889999999999999761 11235566899999996533 3344555666666677
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+-++++||++.+||+..|++++..+
T Consensus 149 ~LFiE~SAkt~~~V~~~FeelveKI 173 (209)
T KOG0080|consen 149 CLFIECSAKTRENVQCCFEELVEKI 173 (209)
T ss_pred cEEEEcchhhhccHHHHHHHHHHHH
Confidence 8899999999999999999887654
No 339
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.74 E-value=2.6e-17 Score=182.98 Aligned_cols=158 Identities=20% Similarity=0.283 Sum_probs=111.1
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeee--------cc------CCCCceeeeeEEEEeeeC-----CeeEEEecCCCC
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALV--------YN------TPDDHVTRDIREGLAKLG-----DLRFKVLDSAGL 180 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v--------~~------~~~~~~T~~~~~~~~~~~-----~~~~~liDTpG~ 180 (607)
+.+|+|+|++|+|||||+++|+....++. .+ ..| .|.+.....+.+. ...+.||||||+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerG--iTi~~~~v~~~~~~~~g~~~~l~liDTPG~ 80 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERG--ITIKAQAVRLNYKAKDGETYVLNLIDTPGH 80 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcC--CCeeeeEEEEEEEcCCCCEEEEEEEECCCc
Confidence 56899999999999999999987532211 11 113 4555444334332 268999999999
Q ss_pred ccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHH
Q 007334 181 ETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAE 260 (607)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~ 260 (607)
. ++...+..++..||++|+|+|++++.+.++.....++.+. +.|+++|+||+|+............
T Consensus 81 ~----------dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~--~ipiIiViNKiDl~~~~~~~~~~el-- 146 (595)
T TIGR01393 81 V----------DFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALEN--DLEIIPVINKIDLPSADPERVKKEI-- 146 (595)
T ss_pred H----------HHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHc--CCCEEEEEECcCCCccCHHHHHHHH--
Confidence 8 5666677889999999999999999888775433333333 7899999999998643211111112
Q ss_pred HHhcCC--CCcEEeecCCCCChHHHHHHhccchHH
Q 007334 261 SLMLGF--GDPIAISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 261 ~~~~~~--~~~i~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
...+++ .+++++||++|.|+++|++.|.+.++.
T Consensus 147 ~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 147 EEVIGLDASEAILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred HHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence 222344 257999999999999999999877653
No 340
>COG2262 HflX GTPases [General function prediction only]
Probab=99.74 E-value=1.4e-17 Score=169.89 Aligned_cols=151 Identities=27% Similarity=0.365 Sum_probs=117.5
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEc-CeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQ-GRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
-..|+++|++|+|||||+|+|++. ...+.+..++|.|+....+.+. |..+.+.||-|+.+.-+.+-.+.| ..|+..
T Consensus 192 ~p~vaLvGYTNAGKSTL~N~LT~~-~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AF--ksTLEE 268 (411)
T COG2262 192 IPLVALVGYTNAGKSTLFNALTGA-DVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAF--KSTLEE 268 (411)
T ss_pred CCeEEEEeeccccHHHHHHHHhcc-CeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHH--HHHHHH
Confidence 357999999999999999999976 4677899999999999888886 689999999999887443333333 567788
Q ss_pred HhhccEEEEEeccchhh----------HH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEVR----------AV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 403 i~~ad~~llViD~~~~~----------~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
...||++++|+|++++. .+ ...+|+|+|+||+|++..... . ..+... .. .
T Consensus 269 ~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~---~--------~~~~~~----~~-~ 332 (411)
T COG2262 269 VKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEI---L--------AELERG----SP-N 332 (411)
T ss_pred hhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchhh---h--------hhhhhc----CC-C
Confidence 88999999999999981 11 135899999999998865320 0 111111 11 5
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
.+++||++|.|++.|.+.|.+.+..
T Consensus 333 ~v~iSA~~~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 333 PVFISAKTGEGLDLLRERIIELLSG 357 (411)
T ss_pred eEEEEeccCcCHHHHHHHHHHHhhh
Confidence 8999999999999999999887664
No 341
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.74 E-value=3.9e-17 Score=161.73 Aligned_cols=156 Identities=21% Similarity=0.266 Sum_probs=111.4
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHh
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVL 201 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 201 (607)
+|+|+|.||||||||+|+|++... .+.+.++ +|.+...+.+.+.+..+.+|||||+........ ....+...++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~-~v~~~~~--tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~---~~~~~~l~~~ 75 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKS-EVAAYEF--TTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGK---GRGRQVIAVA 75 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc-cccCCCC--ccccceEEEEEECCeEEEEEECCCcccccccch---hHHHHHHHhh
Confidence 689999999999999999998753 3566676 888888888888999999999999874432111 2334456789
Q ss_pred hccCEEEEEEecCCCCCHhH-------------------------------------------HHHHHHHHhh-------
Q 007334 202 AKTQFAIFMIDVRSGLHPLD-------------------------------------------LEVGKWLRKH------- 231 (607)
Q Consensus 202 ~~ad~vl~VvD~s~~~~~~~-------------------------------------------~~~~~~l~~~------- 231 (607)
+.+|++++|+|++++....+ ..+...|++.
T Consensus 76 ~~ad~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v 155 (233)
T cd01896 76 RTADLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADV 155 (233)
T ss_pred ccCCEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEE
Confidence 99999999999976432111 1112222221
Q ss_pred ------------------CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCChHHHHHHhccch
Q 007334 232 ------------------APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSV 291 (607)
Q Consensus 232 ------------------~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi~eL~~~i~~~l 291 (607)
...+|+++|+||+|+... ++.. .+.. . ..++++||++|.|+++|++.|.+.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~-----~~~~-~~~~-~-~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 156 LIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLISI-----EELD-LLAR-Q-PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred EEccCCCHHHHHHHHhCCceEeeEEEEEECccCCCH-----HHHH-HHhc-C-CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 123689999999998753 1111 2221 2 2579999999999999999988654
No 342
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.74 E-value=1.4e-17 Score=160.41 Aligned_cols=154 Identities=21% Similarity=0.221 Sum_probs=94.5
Q ss_pred ceEEEEcCCCCchhHHHH-HhhcCCc---eeecCCCCce--eeeEEEE--------EEEcCe--EEEEEecCCCcccccc
Q 007334 325 LQLAIVGRPNVGKSTLLN-ALLQEDR---VLVGPEAGLT--RDSVRVH--------FEYQGR--TVYLVDTAGWLQREKE 388 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin-~l~~~~~---~~~~~~~gtT--~~~~~~~--------~~~~~~--~~~liDTpG~~~~~~~ 388 (607)
+||+++|.+|||||||+. ++.+... .....+..|. .+..... ..++|. .+.||||||..+.
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~--- 79 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK--- 79 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh---
Confidence 799999999999999996 5543311 1122222222 1222211 134444 6679999996421
Q ss_pred cCcchhHHHHHHHHHhhccEEEEEeccchhh--------H------HhcCCcEEEEEeCccCCCCcCchHH------HHH
Q 007334 389 KGPASLSVMQSRKNLMRAHVVALVLDAEEVR--------A------VEEGRGLVVIVNKMDLLSGRQNSAL------YKR 448 (607)
Q Consensus 389 ~~~~~~~~~~~~~~i~~ad~~llViD~~~~~--------~------~~~~~p~ivv~NK~Dl~~~~~~~~~------~~~ 448 (607)
. ...++++||++|+|+|.++.. . ...+.|+|+|+||+||.+....... ...
T Consensus 80 --------~-~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~ 150 (195)
T cd01873 80 --------D-RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARP 150 (195)
T ss_pred --------h-hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccc
Confidence 0 123677999999999998760 0 1136899999999998642100000 000
Q ss_pred --HHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHH
Q 007334 449 --VKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 449 --~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
-.+.+..+.++.++...+++++++||++|.||+++|+.++++
T Consensus 151 ~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 151 IKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred cccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 001222333334444457799999999999999999988763
No 343
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.74 E-value=3.3e-17 Score=183.54 Aligned_cols=154 Identities=23% Similarity=0.334 Sum_probs=114.3
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee----CCeeEEEecCCCCccccCchhHHHHHH
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL----GDLRFKVLDSAGLETEATSGSILDRTA 194 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~----~~~~~~liDTpG~~~~~~~~~~~~~~~ 194 (607)
..|.|+|+|++|+|||||+++|++...+. ...++ .|.+.....+.+ .+..+.+|||||+. .+.
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~-~e~~G--iTq~i~~~~v~~~~~~~~~kItfiDTPGhe----------~F~ 309 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQ-KEAGG--ITQKIGAYEVEFEYKDENQKIVFLDTPGHE----------AFS 309 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCcc-ccCCc--cccccceEEEEEEecCCceEEEEEECCcHH----------HHH
Confidence 46899999999999999999999876542 22344 555443333333 35889999999987 566
Q ss_pred HHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHh-------cC-C
Q 007334 195 GMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLM-------LG-F 266 (607)
Q Consensus 195 ~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~-------~~-~ 266 (607)
.++..++..+|++|+|+|++++...+..+.+..+... ++|+|+|+||+|+..... ......+.. .+ .
T Consensus 310 ~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~--~iPiIVViNKiDl~~~~~---e~v~~eL~~~~ll~e~~g~~ 384 (742)
T CHL00189 310 SMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAA--NVPIIVAINKIDKANANT---ERIKQQLAKYNLIPEKWGGD 384 (742)
T ss_pred HHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhc--CceEEEEEECCCccccCH---HHHHHHHHHhccchHhhCCC
Confidence 6677788999999999999998888777766666655 789999999999875321 111111111 12 2
Q ss_pred CCcEEeecCCCCChHHHHHHhccc
Q 007334 267 GDPIAISAETGLGMTELYEALRPS 290 (607)
Q Consensus 267 ~~~i~iSA~~g~gi~eL~~~i~~~ 290 (607)
.+++++||++|.|+++|++.|...
T Consensus 385 vpvv~VSAktG~GIdeLle~I~~l 408 (742)
T CHL00189 385 TPMIPISASQGTNIDKLLETILLL 408 (742)
T ss_pred ceEEEEECCCCCCHHHHHHhhhhh
Confidence 367999999999999999988764
No 344
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.74 E-value=1.9e-17 Score=154.12 Aligned_cols=137 Identities=15% Similarity=0.168 Sum_probs=90.2
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhh
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMR 405 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ 405 (607)
+|+++|++|||||||+|+|.|.... . ..| ..+.+.+. .+|||||...... +. ......++..
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~--~---~~~-----~~v~~~~~--~~iDtpG~~~~~~----~~--~~~~~~~~~~ 64 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL--A---RKT-----QAVEFNDK--GDIDTPGEYFSHP----RW--YHALITTLQD 64 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc--C---ccc-----eEEEECCC--CcccCCccccCCH----HH--HHHHHHHHhc
Confidence 6999999999999999999876321 1 111 12233333 2799999743321 11 1222345789
Q ss_pred ccEEEEEeccchh------hHH--hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCC
Q 007334 406 AHVVALVLDAEEV------RAV--EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEG 477 (607)
Q Consensus 406 ad~~llViD~~~~------~~~--~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g 477 (607)
||++++|+|+++. ... ..++|+++++||+|+.+.. . +.+. +.+. ... ...|++++||++|
T Consensus 65 ad~il~v~d~~~~~s~~~~~~~~~~~~~~ii~v~nK~Dl~~~~-~----~~~~----~~~~-~~~--~~~p~~~~Sa~~g 132 (158)
T PRK15467 65 VDMLIYVHGANDPESRLPAGLLDIGVSKRQIAVISKTDMPDAD-V----AATR----KLLL-ETG--FEEPIFELNSHDP 132 (158)
T ss_pred CCEEEEEEeCCCcccccCHHHHhccCCCCeEEEEEccccCccc-H----HHHH----HHHH-HcC--CCCCEEEEECCCc
Confidence 9999999999865 111 2468999999999986531 1 1111 1111 111 1259999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 007334 478 RGRIAVMHQVIDTYQ 492 (607)
Q Consensus 478 ~gv~~l~~~i~~~~~ 492 (607)
+|++++|+.+.+...
T Consensus 133 ~gi~~l~~~l~~~~~ 147 (158)
T PRK15467 133 QSVQQLVDYLASLTK 147 (158)
T ss_pred cCHHHHHHHHHHhch
Confidence 999999999887653
No 345
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.73 E-value=4.6e-17 Score=175.97 Aligned_cols=159 Identities=26% Similarity=0.325 Sum_probs=121.2
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANV 200 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 200 (607)
.+||++|.||||||||||+|+|.+. .|++.|| +|.+...+.....+.++.++|.||..+-.+... -...+..+
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q-~VgNwpG--vTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~----DE~Var~~ 76 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQ-KVGNWPG--VTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSE----DEKVARDF 76 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCc-eecCCCC--eeEEEEEEEEEecCceEEEEeCCCcCCCCCCCc----hHHHHHHH
Confidence 4699999999999999999999764 5899999 999999999999999999999999986554321 11223334
Q ss_pred h--hccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCC
Q 007334 201 L--AKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGL 278 (607)
Q Consensus 201 ~--~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~ 278 (607)
+ ...|+++.|+|+++- +.+..+.-.|.+. +.|+++++|++|..+.+-...+ .......+|. +++++||++|+
T Consensus 77 ll~~~~D~ivnVvDAtnL--eRnLyltlQLlE~--g~p~ilaLNm~D~A~~~Gi~ID-~~~L~~~LGv-PVv~tvA~~g~ 150 (653)
T COG0370 77 LLEGKPDLIVNVVDATNL--ERNLYLTLQLLEL--GIPMILALNMIDEAKKRGIRID-IEKLSKLLGV-PVVPTVAKRGE 150 (653)
T ss_pred HhcCCCCEEEEEcccchH--HHHHHHHHHHHHc--CCCeEEEeccHhhHHhcCCccc-HHHHHHHhCC-CEEEEEeecCC
Confidence 3 466999999999863 2222233334455 7899999999999876543322 2233456787 89999999999
Q ss_pred ChHHHHHHhccchH
Q 007334 279 GMTELYEALRPSVE 292 (607)
Q Consensus 279 gi~eL~~~i~~~l~ 292 (607)
|++++++++.+..+
T Consensus 151 G~~~l~~~i~~~~~ 164 (653)
T COG0370 151 GLEELKRAIIELAE 164 (653)
T ss_pred CHHHHHHHHHHhcc
Confidence 99999999976443
No 346
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.73 E-value=2.7e-17 Score=162.85 Aligned_cols=152 Identities=26% Similarity=0.306 Sum_probs=109.9
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccC-cchhHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKG-PASLSVMQSRKN 402 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~-~~~~~~~~~~~~ 402 (607)
...|+|.|.||||||||++++++.+ ..+.+||+||.....++++.++.+++++||||+.+...++. .-+.....++++
T Consensus 168 ~pTivVaG~PNVGKSSlv~~lT~Ak-pEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~h 246 (346)
T COG1084 168 LPTIVVAGYPNVGKSSLVRKLTTAK-PEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRH 246 (346)
T ss_pred CCeEEEecCCCCcHHHHHHHHhcCC-CccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHH
Confidence 3689999999999999999999874 78899999999999999999999999999999988732221 112222334455
Q ss_pred HhhccEEEEEeccchh---------hH-----HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV---------RA-----VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 403 i~~ad~~llViD~~~~---------~~-----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
+ ++++++++|.+.. .. ..-..|+++|+||+|+.+.+... ++...+ ....+..
T Consensus 247 l--~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e~~~----~~~~~~--------~~~~~~~ 312 (346)
T COG1084 247 L--AGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEEKLE----EIEASV--------LEEGGEE 312 (346)
T ss_pred h--cCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccchhHHH----HHHHHH--------Hhhcccc
Confidence 5 7899999999874 01 11247999999999998653221 111111 1112333
Q ss_pred EEEcccCCCCCHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
...+|+..+.+++.+-+.+...
T Consensus 313 ~~~~~~~~~~~~d~~~~~v~~~ 334 (346)
T COG1084 313 PLKISATKGCGLDKLREEVRKT 334 (346)
T ss_pred ccceeeeehhhHHHHHHHHHHH
Confidence 5688999999988777666554
No 347
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.73 E-value=3e-17 Score=154.40 Aligned_cols=144 Identities=22% Similarity=0.274 Sum_probs=98.1
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhh
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMR 405 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ 405 (607)
+|+++|.+|||||||+++|.+.......++.|.+ ...+.+++..+.+|||||..+.. .....+++.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~----~~~~~~~~~~~~i~D~~G~~~~~----------~~~~~~~~~ 66 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFT----PTKLRLDKYEVCIFDLGGGANFR----------GIWVNYYAE 66 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccce----EEEEEECCEEEEEEECCCcHHHH----------HHHHHHHcC
Confidence 4799999999999999999976322334444443 33556788899999999953321 123567889
Q ss_pred ccEEEEEeccchhh-----------HH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCC-CCCCCE
Q 007334 406 AHVVALVLDAEEVR-----------AV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQ-VTGIPV 469 (607)
Q Consensus 406 ad~~llViD~~~~~-----------~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 469 (607)
||++++|+|+++.. .. ..++|+++|+||+|+.+.....+..+. + .+.+.... ....++
T Consensus 67 a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~----~--~l~~~~~~~~~~~~~ 140 (167)
T cd04161 67 AHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEY----L--SLEKLVNENKSLCHI 140 (167)
T ss_pred CCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHh----c--CcccccCCCCceEEE
Confidence 99999999998750 01 147899999999999765432222111 1 01111111 123578
Q ss_pred EEcccCCC------CCHHHHHHHHHH
Q 007334 470 VFTSALEG------RGRIAVMHQVID 489 (607)
Q Consensus 470 v~iSA~~g------~gv~~l~~~i~~ 489 (607)
+++||++| .|+.+.|++|.+
T Consensus 141 ~~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 141 EPCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred EEeEceeCCCCccccCHHHHHHHHhc
Confidence 88999998 899999998864
No 348
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.73 E-value=3.4e-17 Score=154.91 Aligned_cols=154 Identities=18% Similarity=0.205 Sum_probs=97.3
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
.||+++|.+|||||||+++|++... ...+..+..+.....+.+++. .+.+|||||..+... . ...+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~---------~-~~~~ 69 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQF--PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDR---------L-RPLS 69 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhh---------c-cccc
Confidence 4899999999999999999997632 223444444444445566655 567999999643321 1 1134
Q ss_pred HhhccEEEEEeccchh---hH-----------HhcCCcEEEEEeCccCCCCcCchHHHHHHH-HhcHHHHHhhCC-CCCC
Q 007334 403 LMRAHVVALVLDAEEV---RA-----------VEEGRGLVVIVNKMDLLSGRQNSALYKRVK-EAVPQEIQTVIP-QVTG 466 (607)
Q Consensus 403 i~~ad~~llViD~~~~---~~-----------~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~ 466 (607)
+..+|++++|+|+++. .. ...++|+++|+||+|+.+............ ..+.....+.++ ....
T Consensus 70 ~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~ 149 (175)
T cd01870 70 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGA 149 (175)
T ss_pred cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCC
Confidence 5789999999999854 00 114789999999999875422111110000 001011111111 1223
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
.+++++||++|.|++++|+.+.+.
T Consensus 150 ~~~~~~Sa~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 150 FGYMECSAKTKEGVREVFEMATRA 173 (175)
T ss_pred cEEEEeccccCcCHHHHHHHHHHH
Confidence 479999999999999999998764
No 349
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.73 E-value=5.8e-17 Score=178.88 Aligned_cols=161 Identities=23% Similarity=0.281 Sum_probs=112.1
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC------------------CeeEEEecCCCCc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG------------------DLRFKVLDSAGLE 181 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~------------------~~~~~liDTpG~~ 181 (607)
.|.|+++|++|+|||||+|+|++.... ...++ ++|++.....+... ...+.+|||||++
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~--~~e~g-giTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e 80 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVA--KREAG-GITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHE 80 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccc--cccCC-ceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcH
Confidence 589999999999999999999987542 23332 14554332222211 1248999999987
Q ss_pred cccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcC----c----
Q 007334 182 TEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTG----S---- 253 (607)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~----~---- 253 (607)
.+......++..+|++++|+|++++...++.+...+++.. +.|+++|+||+|+...... .
T Consensus 81 ----------~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~--~vpiIVv~NK~Dl~~~~~~~~~~~f~e~ 148 (590)
T TIGR00491 81 ----------AFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMY--KTPFVVAANKIDRIPGWRSHEGRPFMES 148 (590)
T ss_pred ----------hHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHc--CCCEEEEEECCCccchhhhccCchHHHH
Confidence 4555566678999999999999998888887777777765 7899999999999742110 0
Q ss_pred ----HHHH-----------HHHHHhcC--------------CCCcEEeecCCCCChHHHHHHhccchHHHH
Q 007334 254 ----LAGA-----------AAESLMLG--------------FGDPIAISAETGLGMTELYEALRPSVEDYM 295 (607)
Q Consensus 254 ----~~~~-----------~~~~~~~~--------------~~~~i~iSA~~g~gi~eL~~~i~~~l~~~~ 295 (607)
.... ...+...| ..+++++||++|+|+++|+++|....+.++
T Consensus 149 sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~~l 219 (590)
T TIGR00491 149 FSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQYL 219 (590)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHHHh
Confidence 0000 00112221 226799999999999999999876555444
No 350
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.73 E-value=3.6e-17 Score=153.39 Aligned_cols=143 Identities=21% Similarity=0.223 Sum_probs=96.7
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhh
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMR 405 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ 405 (607)
.|+++|.+|||||||+++|++.. ......|.+..+ ...+...+..+.+|||||..+.. .....++++
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~-~~~~~~pt~g~~--~~~i~~~~~~l~i~Dt~G~~~~~----------~~~~~~~~~ 67 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSER-SLESVVPTTGFN--SVAIPTQDAIMELLEIGGSQNLR----------KYWKRYLSG 67 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCC-CcccccccCCcc--eEEEeeCCeEEEEEECCCCcchh----------HHHHHHHhh
Confidence 37999999999999999999763 222222222222 23455677889999999964331 223467889
Q ss_pred ccEEEEEeccchh-----------hHH--hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEc
Q 007334 406 AHVVALVLDAEEV-----------RAV--EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFT 472 (607)
Q Consensus 406 ad~~llViD~~~~-----------~~~--~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i 472 (607)
||++|+|+|+++. ... ..++|+++|+||+|+........ +.+.+ + ...++...+++++++
T Consensus 68 ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~----i~~~~--~-~~~~~~~~~~~~~~~ 140 (164)
T cd04162 68 SQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQE----IHKEL--E-LEPIARGRRWILQGT 140 (164)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHH----HHHHh--C-ChhhcCCCceEEEEe
Confidence 9999999999875 111 25799999999999876532211 11111 0 112333346788999
Q ss_pred ccCC------CCCHHHHHHHHH
Q 007334 473 SALE------GRGRIAVMHQVI 488 (607)
Q Consensus 473 SA~~------g~gv~~l~~~i~ 488 (607)
||++ ++||.++|+.++
T Consensus 141 Sa~~~~s~~~~~~v~~~~~~~~ 162 (164)
T cd04162 141 SLDDDGSPSRMEAVKDLLSQLI 162 (164)
T ss_pred eecCCCChhHHHHHHHHHHHHh
Confidence 9988 999999998775
No 351
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.73 E-value=3e-17 Score=177.36 Aligned_cols=151 Identities=30% Similarity=0.342 Sum_probs=104.2
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeec------------------------------CCCCceeeeEEEEEEEcCe
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVG------------------------------PEAGLTRDSVRVHFEYQGR 372 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~------------------------------~~~gtT~~~~~~~~~~~~~ 372 (607)
..++|+++|++|+|||||+++|++....+.. ..+|+|+|.....+++++.
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~ 84 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKY 84 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCe
Confidence 3588999999999999999999855433221 2689999999999999999
Q ss_pred EEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccch--h----------hHHhcCC-cEEEEEeCccCCCC
Q 007334 373 TVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEE--V----------RAVEEGR-GLVVIVNKMDLLSG 439 (607)
Q Consensus 373 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~--~----------~~~~~~~-p~ivv~NK~Dl~~~ 439 (607)
.+.||||||+.++. ..+...+..+|++|+|+|+++ + .....+. |+++|+||+|+.+.
T Consensus 85 ~i~liDtpG~~~~~----------~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~ 154 (425)
T PRK12317 85 YFTIVDCPGHRDFV----------KNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNY 154 (425)
T ss_pred EEEEEECCCcccch----------hhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccc
Confidence 99999999975431 112344678999999999987 3 1122354 69999999999753
Q ss_pred cCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHHHH
Q 007334 440 RQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMH 485 (607)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~ 485 (607)
. ...++.+.+.+...+...-......+++++||++|.|++++..
T Consensus 155 ~--~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~ 198 (425)
T PRK12317 155 D--EKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE 198 (425)
T ss_pred c--HHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence 1 1122222222222221111111236899999999999987653
No 352
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=5.4e-17 Score=139.77 Aligned_cols=159 Identities=18% Similarity=0.269 Sum_probs=125.2
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC--CeeEEEecCCCCccccCchhHHHHHHHH
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG--DLRFKVLDSAGLETEATSGSILDRTAGM 196 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~ 196 (607)
.+++-.|||.-|||||+|+..++.+++ ..+-|. +....+..+.++.. ..++++|||+|++ ++...
T Consensus 10 yifkyiiigdmgvgkscllhqftekkf--madcph-tigvefgtriievsgqkiklqiwdtagqe----------rfrav 76 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKKF--MADCPH-TIGVEFGTRIIEVSGQKIKLQIWDTAGQE----------RFRAV 76 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHHH--hhcCCc-ccceecceeEEEecCcEEEEEEeecccHH----------HHHHH
Confidence 367889999999999999999998765 333332 12223333334444 4679999999999 88889
Q ss_pred HHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhh----CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEe
Q 007334 197 TANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH----APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAI 272 (607)
Q Consensus 197 ~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~----~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~i 272 (607)
+..+++.|...++|+|++...+... +..||.+. .++.-+++++||.|+...+.+..++..+.+...|+ .++++
T Consensus 77 trsyyrgaagalmvyditrrstynh--lsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl-~fle~ 153 (215)
T KOG0097|consen 77 TRSYYRGAAGALMVYDITRRSTYNH--LSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGL-MFLEA 153 (215)
T ss_pred HHHHhccccceeEEEEehhhhhhhh--HHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCe-EEEEe
Confidence 9999999999999999998877765 55777664 45667899999999999888888888888888888 78999
Q ss_pred ecCCCCChHHHHHHhccchHH
Q 007334 273 SAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 273 SA~~g~gi~eL~~~i~~~l~~ 293 (607)
||++|.++++.|-.-...+..
T Consensus 154 saktg~nvedafle~akkiyq 174 (215)
T KOG0097|consen 154 SAKTGQNVEDAFLETAKKIYQ 174 (215)
T ss_pred cccccCcHHHHHHHHHHHHHH
Confidence 999999999977655544443
No 353
>PRK13796 GTPase YqeH; Provisional
Probab=99.73 E-value=5.5e-17 Score=170.77 Aligned_cols=152 Identities=26% Similarity=0.324 Sum_probs=107.1
Q ss_pred HHHHHHhhccC-EEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHH----HHHHHhcCCC--
Q 007334 195 GMTANVLAKTQ-FAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGA----AAESLMLGFG-- 267 (607)
Q Consensus 195 ~~~~~~~~~ad-~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~----~~~~~~~~~~-- 267 (607)
..++..+..+| +|++|+|+.+..... ...+.+...++|+++|+||+|+.+... ..+.. ...+...|+.
T Consensus 60 ~~~l~~i~~~~~lIv~VVD~~D~~~s~----~~~L~~~~~~kpviLViNK~DLl~~~~-~~~~i~~~l~~~~k~~g~~~~ 134 (365)
T PRK13796 60 LKLLNGIGDSDALVVNVVDIFDFNGSW----IPGLHRFVGNNPVLLVGNKADLLPKSV-KKNKVKNWLRQEAKELGLRPV 134 (365)
T ss_pred HHHHHhhcccCcEEEEEEECccCCCch----hHHHHHHhCCCCEEEEEEchhhCCCcc-CHHHHHHHHHHHHHhcCCCcC
Confidence 34667777777 999999998754332 233333333689999999999975322 11111 1223344543
Q ss_pred CcEEeecCCCCChHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhcC
Q 007334 268 DPIAISAETGLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQE 347 (607)
Q Consensus 268 ~~i~iSA~~g~gi~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~~ 347 (607)
.++.+||++|.|+++|++.|.+..+ ..++++||.||||||||+|+|++.
T Consensus 135 ~v~~vSAk~g~gI~eL~~~I~~~~~-------------------------------~~~v~vvG~~NvGKSTLiN~L~~~ 183 (365)
T PRK13796 135 DVVLISAQKGHGIDELLEAIEKYRE-------------------------------GRDVYVVGVTNVGKSTLINRIIKE 183 (365)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC-------------------------------CCeEEEEcCCCCcHHHHHHHHHhh
Confidence 6799999999999999998864321 136999999999999999999854
Q ss_pred C-----ceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCccc
Q 007334 348 D-----RVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQR 385 (607)
Q Consensus 348 ~-----~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~ 385 (607)
. ...+++.||||++.....+ ++ ...|+||||+...
T Consensus 184 ~~~~~~~~~~s~~pGTT~~~~~~~l--~~-~~~l~DTPGi~~~ 223 (365)
T PRK13796 184 ITGEKDVITTSRFPGTTLDKIEIPL--DD-GSFLYDTPGIIHR 223 (365)
T ss_pred ccCccceEEecCCCCccceeEEEEc--CC-CcEEEECCCcccc
Confidence 2 3458999999999776543 22 2479999998643
No 354
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=2.5e-17 Score=143.83 Aligned_cols=147 Identities=20% Similarity=0.170 Sum_probs=108.6
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
.-+|++++|..|.|||+|+.+++... ..-...-.+..+.....+.++++ +++||||+|+.+++ ..++
T Consensus 8 yLfKfl~iG~aGtGKSCLLh~Fie~k-fkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFR----------SVtR 76 (214)
T KOG0086|consen 8 YLFKFLVIGSAGTGKSCLLHQFIENK-FKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFR----------SVTR 76 (214)
T ss_pred hhheeEEeccCCCChhHHHHHHHHhh-hcccccceeeeeecceeeeecCcEEEEEEeecccHHHHH----------HHHH
Confidence 34799999999999999999999543 22222222344555556666665 67899999975553 4567
Q ss_pred HHHhhccEEEEEeccchhh--------------HHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEVR--------------AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~--------------~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
.|+++|-++++|||++... ....++-+|+++||.||...+ ++.......+++...
T Consensus 77 sYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R-----------~VtflEAs~FaqEne 145 (214)
T KOG0086|consen 77 SYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPER-----------EVTFLEASRFAQENE 145 (214)
T ss_pred HHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhh-----------hhhHHHHHhhhcccc
Confidence 8999999999999999761 123467789999999997653 233444555666677
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+-+.++||++|+|+++.|-.+.+.+
T Consensus 146 l~flETSa~TGeNVEEaFl~c~~tI 170 (214)
T KOG0086|consen 146 LMFLETSALTGENVEEAFLKCARTI 170 (214)
T ss_pred eeeeeecccccccHHHHHHHHHHHH
Confidence 7899999999999999998877654
No 355
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.73 E-value=1e-16 Score=147.66 Aligned_cols=159 Identities=27% Similarity=0.316 Sum_probs=111.3
Q ss_pred EecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC-CeeEEEecCCCCccccCchhHHHHHHHHHHHHhhc
Q 007334 125 IIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG-DLRFKVLDSAGLETEATSGSILDRTAGMTANVLAK 203 (607)
Q Consensus 125 ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 203 (607)
|+|.+|+|||||+|+|++.........++ +|.+......... +..+.+|||||+......... .......++..
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~---~~~~~~~~~~~ 75 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPG--TTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGRE---REELARRVLER 75 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCC--cEECCeEEEEEecCCCcEEEEECCCCCccccchhh---HHHHHHHHHHh
Confidence 58999999999999999876554444444 6766666655554 678999999999854432211 12455567889
Q ss_pred cCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHH--HHHHHHhcCCCCcEEeecCCCCChH
Q 007334 204 TQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAG--AAAESLMLGFGDPIAISAETGLGMT 281 (607)
Q Consensus 204 ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~--~~~~~~~~~~~~~i~iSA~~g~gi~ 281 (607)
+|++++|+|++.+.......+...... .+.|+++|+||+|+.......... ...........+++++||.++.|++
T Consensus 76 ~d~il~v~~~~~~~~~~~~~~~~~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~ 153 (163)
T cd00880 76 ADLILFVVDADLRADEEEEKLLELLRE--RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGID 153 (163)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHh--cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHH
Confidence 999999999999877776553333333 378999999999998753321111 0111112223378999999999999
Q ss_pred HHHHHhccc
Q 007334 282 ELYEALRPS 290 (607)
Q Consensus 282 eL~~~i~~~ 290 (607)
++++.+.+.
T Consensus 154 ~l~~~l~~~ 162 (163)
T cd00880 154 ELREALIEA 162 (163)
T ss_pred HHHHHHHhh
Confidence 999988653
No 356
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.72 E-value=7.8e-17 Score=148.90 Aligned_cols=142 Identities=20% Similarity=0.157 Sum_probs=96.8
Q ss_pred EEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhhc
Q 007334 327 LAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRA 406 (607)
Q Consensus 327 v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~a 406 (607)
|+++|++|||||||+|+|.+.. ......|++..+.. .+..++..+.+|||||..... .....++..+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~~~--~~~~~~~~~~~~D~~g~~~~~----------~~~~~~~~~~ 68 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQ-FSEDTIPTVGFNMR--KVTKGNVTLKVWDLGGQPRFR----------SMWERYCRGV 68 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCC-CCcCccCCCCcceE--EEEECCEEEEEEECCCCHhHH----------HHHHHHHhcC
Confidence 7999999999999999999864 33333444443332 345567889999999964331 1234567889
Q ss_pred cEEEEEeccchhhH---------------HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEE
Q 007334 407 HVVALVLDAEEVRA---------------VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVF 471 (607)
Q Consensus 407 d~~llViD~~~~~~---------------~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 471 (607)
|++++|+|+++... ...++|+++|+||+|+.+........+ .+.........+++++
T Consensus 69 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~ 140 (159)
T cd04159 69 NAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIE--------QMNLKSITDREVSCYS 140 (159)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHH--------HhCcccccCCceEEEE
Confidence 99999999987410 014789999999999876532111111 1111111223468999
Q ss_pred cccCCCCCHHHHHHHHHH
Q 007334 472 TSALEGRGRIAVMHQVID 489 (607)
Q Consensus 472 iSA~~g~gv~~l~~~i~~ 489 (607)
+||++|.|++++++.+.+
T Consensus 141 ~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 141 ISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred EEeccCCChHHHHHHHhh
Confidence 999999999999998864
No 357
>PRK12288 GTPase RsgA; Reviewed
Probab=99.72 E-value=5.7e-17 Score=168.55 Aligned_cols=146 Identities=27% Similarity=0.349 Sum_probs=103.4
Q ss_pred HhhccCEEEEEEecCCCCCHhHHHHHHHHHhh-CCCCcEEEEecCCCcccCCcC-cHHHHHHHHHhcCCCCcEEeecCCC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH-APQIKPIVAMNKCESLHNGTG-SLAGAAAESLMLGFGDPIAISAETG 277 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~-~~~~~~~~~~~~~~~~~i~iSA~~g 277 (607)
...++|.+++|++.....+... +-+||... ..++|+++|+||+|+...... ........+...++ +++++||++|
T Consensus 117 iaANvD~vlIV~s~~p~~s~~~--Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~-~v~~vSA~tg 193 (347)
T PRK12288 117 IAANIDQIVIVSAVLPELSLNI--IDRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGY-RVLMVSSHTG 193 (347)
T ss_pred EEEEccEEEEEEeCCCCCCHHH--HHHHHHHHHhcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCC-eEEEEeCCCC
Confidence 3578999999999876555543 23333221 236899999999999764221 11222333445676 8899999999
Q ss_pred CChHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhcCCceeecCCCC
Q 007334 278 LGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAG 357 (607)
Q Consensus 278 ~gi~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~g 357 (607)
.|+++|++.|... .++++|.||||||||+|+|++.....+++.++
T Consensus 194 ~GideL~~~L~~k-----------------------------------i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~ 238 (347)
T PRK12288 194 EGLEELEAALTGR-----------------------------------ISIFVGQSGVGKSSLINALLPEAEILVGDVSD 238 (347)
T ss_pred cCHHHHHHHHhhC-----------------------------------CEEEECCCCCCHHHHHHHhccccceeeccccC
Confidence 9999999877421 26899999999999999999988788877775
Q ss_pred -------ceeeeEEEEEEEcCeEEEEEecCCCcccc
Q 007334 358 -------LTRDSVRVHFEYQGRTVYLVDTAGWLQRE 386 (607)
Q Consensus 358 -------tT~~~~~~~~~~~~~~~~liDTpG~~~~~ 386 (607)
||+......+..+ ..|+||||+..+.
T Consensus 239 ~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~ 271 (347)
T PRK12288 239 NSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG 271 (347)
T ss_pred cCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence 5655443333222 2599999998774
No 358
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.72 E-value=3.1e-17 Score=177.21 Aligned_cols=153 Identities=21% Similarity=0.232 Sum_probs=110.4
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeec------------------------c------CCCCceeeeeEEEEeeeCC
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVY------------------------N------TPDDHVTRDIREGLAKLGD 169 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~------------------------~------~~~~~~T~~~~~~~~~~~~ 169 (607)
..+|+++|++|+|||||+++|+.....+.. + .+| +|+|.....+.+++
T Consensus 6 ~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG--~T~d~~~~~~~~~~ 83 (425)
T PRK12317 6 HLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERG--VTIDLAHKKFETDK 83 (425)
T ss_pred EEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcC--ccceeeeEEEecCC
Confidence 368999999999999999999854433221 1 345 99999999999999
Q ss_pred eeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCC--CCCHhHHHHHHHHHhhCCCCcEEEEecCCCcc
Q 007334 170 LRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRS--GLHPLDLEVGKWLRKHAPQIKPIVAMNKCESL 247 (607)
Q Consensus 170 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~--~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~ 247 (607)
..+.+|||||+. ++...+...+..+|++++|+|+++ +...++.+...++.... ..|+++|+||+|+.
T Consensus 84 ~~i~liDtpG~~----------~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~-~~~iivviNK~Dl~ 152 (425)
T PRK12317 84 YYFTIVDCPGHR----------DFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLG-INQLIVAINKMDAV 152 (425)
T ss_pred eEEEEEECCCcc----------cchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcC-CCeEEEEEEccccc
Confidence 999999999986 343444555788999999999998 66666666666665541 24689999999997
Q ss_pred cCCcCcH----HHHHHHHHhcCC----CCcEEeecCCCCChHHHHH
Q 007334 248 HNGTGSL----AGAAAESLMLGF----GDPIAISAETGLGMTELYE 285 (607)
Q Consensus 248 ~~~~~~~----~~~~~~~~~~~~----~~~i~iSA~~g~gi~eL~~ 285 (607)
....... .+....+...++ .+++++||++|+|++++.+
T Consensus 153 ~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~ 198 (425)
T PRK12317 153 NYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE 198 (425)
T ss_pred cccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence 5221111 122222334454 2579999999999987543
No 359
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.72 E-value=1.1e-16 Score=147.17 Aligned_cols=140 Identities=30% Similarity=0.420 Sum_probs=98.9
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|+|||||+|++++.. ......+++|.+.....+.+++ ..+.+|||||+.+... + ....
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~------~----~~~~ 70 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRA------I----RRLY 70 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchH------H----HHHH
Confidence 689999999999999999999876 7777888999988887778888 6788999999644321 0 1122
Q ss_pred HhhccEEEEEecc-------chhh---------HHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 403 LMRAHVVALVLDA-------EEVR---------AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 403 i~~ad~~llViD~-------~~~~---------~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
...++.++.++|. .... ....+.|+++++||+|+..... .......+.....
T Consensus 71 ~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~------------~~~~~~~~~~~~~ 138 (161)
T TIGR00231 71 YRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAKL------------KTHVAFLFAKLNG 138 (161)
T ss_pred HhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcchh------------hHHHHHHHhhccC
Confidence 3345555555554 3321 1112789999999999976421 1112222333446
Q ss_pred CCEEEcccCCCCCHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQV 487 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i 487 (607)
.+++++||++|.|+.++++.|
T Consensus 139 ~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 139 EPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred CceEEeecCCCCCHHHHHHHh
Confidence 689999999999999998875
No 360
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=2.2e-17 Score=143.44 Aligned_cols=148 Identities=19% Similarity=0.174 Sum_probs=106.2
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
-+|+.++|...||||||+-++++.. +...-+..+..|.....+--.. .++++|||+|+.+ +.. .+..
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddS-Ft~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEr---------yrt-iTTa 89 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDS-FTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQER---------YRT-ITTA 89 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccc-cccceeeeeeeeEEEeEeeecccEEEEEEEecccchh---------hhH-HHHH
Confidence 3699999999999999999999763 3333444455565544433222 3788999999543 322 2446
Q ss_pred HHhhccEEEEEeccchhhH--------------HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEVRA--------------VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~~~--------------~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
++++|+++||++|.++... ...+.|+|+|+||||+.+++- ++.+-...+++..|.
T Consensus 90 yyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRv-----------is~e~g~~l~~~LGf 158 (193)
T KOG0093|consen 90 YYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERV-----------ISHERGRQLADQLGF 158 (193)
T ss_pred HhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCcccee-----------eeHHHHHHHHHHhCh
Confidence 8899999999999997511 135889999999999976632 222222233333477
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
.++++|||.+.|+.++|+.+...+..
T Consensus 159 efFEtSaK~NinVk~~Fe~lv~~Ic~ 184 (193)
T KOG0093|consen 159 EFFETSAKENINVKQVFERLVDIICD 184 (193)
T ss_pred HHhhhcccccccHHHHHHHHHHHHHH
Confidence 89999999999999999999887653
No 361
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.72 E-value=3.4e-17 Score=160.53 Aligned_cols=147 Identities=24% Similarity=0.296 Sum_probs=112.7
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe-EEEEEecCCCccc-ccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR-TVYLVDTAGWLQR-EKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~-~~~liDTpG~~~~-~~~~~~~~~~~~~~~~~ 402 (607)
..|++||.||+|||||+|+|+... ..+.+|++||..+..+.+.+++. ++.+-|.||+.+. ....+.. ...+++
T Consensus 197 advGLVG~PNAGKSTLL~als~AK-pkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG----~~FLrH 271 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAK-PKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLG----YKFLRH 271 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccC-CcccccceeeeccccceeeccccceeEeccCccccccccccCccc----HHHHHH
Confidence 368999999999999999999765 58999999999999998888776 4999999999887 3333322 345689
Q ss_pred HhhccEEEEEeccchh----------------hH---HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCC
Q 007334 403 LMRAHVVALVLDAEEV----------------RA---VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQ 463 (607)
Q Consensus 403 i~~ad~~llViD~~~~----------------~~---~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (607)
+++|+++++|+|.+.. .. -...+|.+||+||+|+.+.+. ..++ ++.+.+.
T Consensus 272 iER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~--~~l~--------~L~~~lq- 340 (366)
T KOG1489|consen 272 IERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEK--NLLS--------SLAKRLQ- 340 (366)
T ss_pred HHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHH--HHHH--------HHHHHcC-
Confidence 9999999999999865 11 124789999999999974421 1112 2232222
Q ss_pred CCCCCEEEcccCCCCCHHHHHHHHHH
Q 007334 464 VTGIPVVFTSALEGRGRIAVMHQVID 489 (607)
Q Consensus 464 ~~~~~~v~iSA~~g~gv~~l~~~i~~ 489 (607)
+..|+++||++++|+.+++..+.+
T Consensus 341 --~~~V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 341 --NPHVVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred --CCcEEEeeeccccchHHHHHHHhh
Confidence 336999999999999999877643
No 362
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.72 E-value=8.6e-17 Score=178.94 Aligned_cols=151 Identities=25% Similarity=0.301 Sum_probs=110.0
Q ss_pred cCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHH--hhcc
Q 007334 127 GRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANV--LAKT 204 (607)
Q Consensus 127 G~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~--~~~a 204 (607)
|+||||||||+|+|++.+. .+++.++ +|.+...+.+.+++.++.+|||||+.+...... . + .....+ ...+
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-~v~n~pG--~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~-~-e--~v~~~~l~~~~a 73 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-TVGNWPG--VTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSL-E-E--EVARDYLLNEKP 73 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-eecCCCC--eEEEEEEEEEEECCeEEEEEECCCccccCccch-H-H--HHHHHHHhhcCC
Confidence 8999999999999999764 5778888 999999888888899999999999985432211 0 1 112222 2478
Q ss_pred CEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCChHHHH
Q 007334 205 QFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELY 284 (607)
Q Consensus 205 d~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi~eL~ 284 (607)
|++++|+|+++.. .+..+...+.+. ++|+++|+||+|+.+...... ........++. +++++||++|+|+++++
T Consensus 74 DvvI~VvDat~le--r~l~l~~ql~~~--~~PiIIVlNK~Dl~~~~~i~~-d~~~L~~~lg~-pvv~tSA~tg~Gi~eL~ 147 (591)
T TIGR00437 74 DLVVNVVDASNLE--RNLYLTLQLLEL--GIPMILALNLVDEAEKKGIRI-DEEKLEERLGV-PVVPTSATEGRGIERLK 147 (591)
T ss_pred CEEEEEecCCcch--hhHHHHHHHHhc--CCCEEEEEehhHHHHhCCChh-hHHHHHHHcCC-CEEEEECCCCCCHHHHH
Confidence 9999999998732 222333334343 789999999999875443222 22333445666 78999999999999999
Q ss_pred HHhccc
Q 007334 285 EALRPS 290 (607)
Q Consensus 285 ~~i~~~ 290 (607)
+.+.+.
T Consensus 148 ~~i~~~ 153 (591)
T TIGR00437 148 DAIRKA 153 (591)
T ss_pred HHHHHH
Confidence 999764
No 363
>PRK09866 hypothetical protein; Provisional
Probab=99.72 E-value=8e-17 Score=173.03 Aligned_cols=115 Identities=15% Similarity=0.110 Sum_probs=82.3
Q ss_pred eeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccC
Q 007334 170 LRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHN 249 (607)
Q Consensus 170 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~ 249 (607)
.++.++||||+..... .. ........+.++|+|+||+|+..+.+..+..+.+.+++...+.|+++|+||+|+.+.
T Consensus 230 ~QIIFVDTPGIhk~~~--~~---L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dr 304 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQ--PH---LQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDR 304 (741)
T ss_pred CCEEEEECCCCCCccc--hH---HHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCc
Confidence 4689999999974221 11 122223479999999999999998888888888888876333599999999998643
Q ss_pred CcCcHHHHHHH---H-H--hcCCCCcEEeecCCCCChHHHHHHhcc
Q 007334 250 GTGSLAGAAAE---S-L--MLGFGDPIAISAETGLGMTELYEALRP 289 (607)
Q Consensus 250 ~~~~~~~~~~~---~-~--~~~~~~~i~iSA~~g~gi~eL~~~i~~ 289 (607)
.....+..... . . ...+..+++|||+.|.|+++|++.|..
T Consensus 305 eeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 305 NSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred ccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 32222222222 1 1 123557899999999999999999875
No 364
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.72 E-value=3.2e-16 Score=146.37 Aligned_cols=161 Identities=25% Similarity=0.314 Sum_probs=107.0
Q ss_pred EEEecCCCCchhHHHHHhhccc-eeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHh
Q 007334 123 VMIIGRPNVGKSALFNRLIRRR-EALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVL 201 (607)
Q Consensus 123 V~ivG~~nvGKSSL~n~L~~~~-~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 201 (607)
|+++|.+|||||||+|.|++.. ....+..++ .|.+.... ... ..+.+|||||+............+......++
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~--~t~~~~~~--~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~ 76 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPG--KTQLINFF--NVN-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYL 76 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCC--cceeEEEE--Ecc-CeEEEecCCCccccccCHHHHHHHHHHHHHHH
Confidence 8999999999999999999533 333444444 55554332 222 38999999998743221112222333333333
Q ss_pred ---hccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcH-HHHHHH-HH-hcCCCCcEEeecC
Q 007334 202 ---AKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSL-AGAAAE-SL-MLGFGDPIAISAE 275 (607)
Q Consensus 202 ---~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~-~~~~~~-~~-~~~~~~~i~iSA~ 275 (607)
...+++++|+|...+.+..+..+.+|+... +.|+++|+||+|+........ ...... .. .....+++++||+
T Consensus 77 ~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~--~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~ 154 (170)
T cd01876 77 ENRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL--GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSL 154 (170)
T ss_pred HhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc--CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecC
Confidence 346789999999887777777788888876 689999999999965422111 111111 11 1333477899999
Q ss_pred CCCChHHHHHHhccc
Q 007334 276 TGLGMTELYEALRPS 290 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~ 290 (607)
++.|+.++++.|.+.
T Consensus 155 ~~~~~~~l~~~l~~~ 169 (170)
T cd01876 155 KGQGIDELRALIEKW 169 (170)
T ss_pred CCCCHHHHHHHHHHh
Confidence 999999999998754
No 365
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.72 E-value=4.3e-17 Score=160.65 Aligned_cols=161 Identities=25% Similarity=0.292 Sum_probs=120.2
Q ss_pred cCCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 118 NLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 118 ~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
.+..+|++||+||||||||+|+|++.+. .+.++++ ||.....+.++++|.+++++|+||+......+.- .-.++
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTnt~s-eva~y~F--TTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~g---rG~~v 134 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTNTKS-EVADYPF--TTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRG---RGRQV 134 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhCCCc-cccccCc--eecccccceEeecCceEEEEcCcccccCcccCCC---Cccee
Confidence 3457899999999999999999999764 4677887 9999999999999999999999999976654322 12456
Q ss_pred HHHhhccCEEEEEEecCCCCCHhH---HH----------------------------------------HHHHHHhh---
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLD---LE----------------------------------------VGKWLRKH--- 231 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~---~~----------------------------------------~~~~l~~~--- 231 (607)
+..++.||+|++|+|+..+....+ .+ +...|++.
T Consensus 135 lsv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~ 214 (365)
T COG1163 135 LSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIH 214 (365)
T ss_pred eeeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcc
Confidence 778899999999999986554221 01 11122221
Q ss_pred ----------------------CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCChHHHHHHhcc
Q 007334 232 ----------------------APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRP 289 (607)
Q Consensus 232 ----------------------~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi~eL~~~i~~ 289 (607)
...+|.++|+||+|+...+ ....+... .+.+++||+.|.|+++|.+.|.+
T Consensus 215 nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e------~~~~l~~~--~~~v~isa~~~~nld~L~e~i~~ 286 (365)
T COG1163 215 NADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLE------ELERLARK--PNSVPISAKKGINLDELKERIWD 286 (365)
T ss_pred cceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCHH------HHHHHHhc--cceEEEecccCCCHHHHHHHHHH
Confidence 0147899999999998731 11122221 27899999999999999999987
Q ss_pred chH
Q 007334 290 SVE 292 (607)
Q Consensus 290 ~l~ 292 (607)
.+.
T Consensus 287 ~L~ 289 (365)
T COG1163 287 VLG 289 (365)
T ss_pred hhC
Confidence 663
No 366
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.71 E-value=1.2e-16 Score=158.95 Aligned_cols=173 Identities=25% Similarity=0.283 Sum_probs=122.9
Q ss_pred ccccCCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee-CCeeEEEecCCCCccccCchhHHHHH
Q 007334 115 IDINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL-GDLRFKVLDSAGLETEATSGSILDRT 193 (607)
Q Consensus 115 ~~~~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~ 193 (607)
+..+.+.-|.+||.||||||||+++++..+.. +.++|+ ||.....+.+.. .+..|++-|.||++.....+.-+..
T Consensus 154 LELKllADVGLVG~PNaGKSTlls~vS~AkPK-IadYpF--TTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~- 229 (369)
T COG0536 154 LELKLLADVGLVGLPNAGKSTLLSAVSAAKPK-IADYPF--TTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGL- 229 (369)
T ss_pred EEEeeecccccccCCCCcHHHHHHHHhhcCCc-ccCCcc--ccccCcccEEEecCCCcEEEecCcccccccccCCCccH-
Confidence 33445678999999999999999999998765 578888 999999998886 5566999999999976654332221
Q ss_pred HHHHHHHhhccCEEEEEEecCCCCC---HhHHH-HHHHHHhh---CCCCcEEEEecCCCcccCCcCcHHHHHHHHH-hcC
Q 007334 194 AGMTANVLAKTQFAIFMIDVRSGLH---PLDLE-VGKWLRKH---APQIKPIVAMNKCESLHNGTGSLAGAAAESL-MLG 265 (607)
Q Consensus 194 ~~~~~~~~~~ad~vl~VvD~s~~~~---~~~~~-~~~~l~~~---~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~-~~~ 265 (607)
.-+..++.+-+++||+|++.... .++.. +..-|.+. ..++|.++|+||+|+...++.. +....... ..+
T Consensus 230 --~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~-~~~~~~l~~~~~ 306 (369)
T COG0536 230 --RFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEEL-EELKKALAEALG 306 (369)
T ss_pred --HHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHH-HHHHHHHHHhcC
Confidence 22567889999999999986432 23322 33444443 2478999999999966543221 22222222 234
Q ss_pred CCCcEEeecCCCCChHHHHHHhccchHHH
Q 007334 266 FGDPIAISAETGLGMTELYEALRPSVEDY 294 (607)
Q Consensus 266 ~~~~i~iSA~~g~gi~eL~~~i~~~l~~~ 294 (607)
....++|||.+++|+++|...+.+.+...
T Consensus 307 ~~~~~~ISa~t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 307 WEVFYLISALTREGLDELLRALAELLEET 335 (369)
T ss_pred CCcceeeehhcccCHHHHHHHHHHHHHHh
Confidence 32334499999999999999999888764
No 367
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.71 E-value=8.8e-17 Score=178.69 Aligned_cols=153 Identities=22% Similarity=0.194 Sum_probs=109.9
Q ss_pred eEEEEcCCCCchhHHHHHhhcCC--ceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 326 QLAIVGRPNVGKSTLLNALLQED--RVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~--~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
.|+++|++|+|||||+++|+|.+ ........|+|.+.....+.+++..+.+|||||+.++ . ..+..++
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f---------~-~~~~~g~ 71 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKF---------I-SNAIAGG 71 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHH---------H-HHHHhhh
Confidence 58999999999999999999753 2233446789999888888888899999999996433 1 2345667
Q ss_pred hhccEEEEEeccchh----------hHHhcCCc-EEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEc
Q 007334 404 MRAHVVALVLDAEEV----------RAVEEGRG-LVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFT 472 (607)
Q Consensus 404 ~~ad~~llViD~~~~----------~~~~~~~p-~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i 472 (607)
.++|++++|+|++++ .....++| +|+|+||+|+.+... ++...+.+...+. ......+.+++++
T Consensus 72 ~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~----~~~~~~ei~~~l~-~~~~~~~~~ii~v 146 (581)
T TIGR00475 72 GGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEE----IKRTEMFMKQILN-SYIFLKNAKIFKT 146 (581)
T ss_pred ccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHH----HHHHHHHHHHHHH-HhCCCCCCcEEEE
Confidence 789999999999874 12235788 999999999986421 1111122211111 1111225799999
Q ss_pred ccCCCCCHHHHHHHHHHHHHH
Q 007334 473 SALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 473 SA~~g~gv~~l~~~i~~~~~~ 493 (607)
||++|.|++++++.+......
T Consensus 147 SA~tG~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 147 SAKTGQGIGELKKELKNLLES 167 (581)
T ss_pred eCCCCCCchhHHHHHHHHHHh
Confidence 999999999999887765543
No 368
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.71 E-value=1.5e-16 Score=146.50 Aligned_cols=151 Identities=32% Similarity=0.456 Sum_probs=110.3
Q ss_pred EEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEc-CeEEEEEecCCCcccccccCcchhHHHHHHHHHhhcc
Q 007334 329 IVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQ-GRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAH 407 (607)
Q Consensus 329 ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad 407 (607)
++|++|+|||||+|+|++......++.+++|.+......... +..+.+|||||+.+..... ......+...+..+|
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~---~~~~~~~~~~~~~~d 77 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLG---REREELARRVLERAD 77 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccch---hhHHHHHHHHHHhCC
Confidence 579999999999999998876667788888888877766665 6789999999987653211 111234456778899
Q ss_pred EEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCC
Q 007334 408 VVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEG 477 (607)
Q Consensus 408 ~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g 477 (607)
++++|+|++.. .....++|+++|+||+|+........... ............+++++||+++
T Consensus 78 ~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~sa~~~ 149 (163)
T cd00880 78 LILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEELLE--------LRLLILLLLLGLPVIAVSALTG 149 (163)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhhHHHHHH--------HHHhhcccccCCceEEEeeecc
Confidence 99999999876 12235899999999999987532211110 0111223345789999999999
Q ss_pred CCHHHHHHHHHHH
Q 007334 478 RGRIAVMHQVIDT 490 (607)
Q Consensus 478 ~gv~~l~~~i~~~ 490 (607)
.|+.++++.+.+.
T Consensus 150 ~~v~~l~~~l~~~ 162 (163)
T cd00880 150 EGIDELREALIEA 162 (163)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999888753
No 369
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.71 E-value=9.7e-17 Score=155.83 Aligned_cols=158 Identities=18% Similarity=0.072 Sum_probs=100.7
Q ss_pred EEEEecCCCCchhHHHHHhhccce-e-eeccCCCCceeeeeEEEEeeeC---------------------------C---
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRRE-A-LVYNTPDDHVTRDIREGLAKLG---------------------------D--- 169 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~-~-~v~~~~~~~~T~~~~~~~~~~~---------------------------~--- 169 (607)
+|+++|+.++|||||+.+|++... . .-....+ .|....+....+. +
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~--~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERN--ITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGET 79 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcC--CceeecccccccccccCcCCCCccccccccccccccccccCCcc
Confidence 699999999999999999986511 0 0000011 1222211111111 2
Q ss_pred ---eeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCC-CCHhHHHHHHHHHhhCCCCcEEEEecCCC
Q 007334 170 ---LRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSG-LHPLDLEVGKWLRKHAPQIKPIVAMNKCE 245 (607)
Q Consensus 170 ---~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~-~~~~~~~~~~~l~~~~~~~p~ilV~NK~D 245 (607)
..+.+|||||+. ++.......+..+|++++|+|++++ ......+.+..+... ...|+++|+||+|
T Consensus 80 ~~~~~i~~iDtPG~~----------~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~-~~~~iiivvNK~D 148 (203)
T cd01888 80 KLVRHVSFVDCPGHE----------ILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM-GLKHIIIVQNKID 148 (203)
T ss_pred ccccEEEEEECCChH----------HHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc-CCCcEEEEEEchh
Confidence 689999999986 5666777888899999999999975 344444444444443 2347899999999
Q ss_pred cccCCcCc--HHHHHHHHHhc--CCCCcEEeecCCCCChHHHHHHhccchH
Q 007334 246 SLHNGTGS--LAGAAAESLML--GFGDPIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 246 ~~~~~~~~--~~~~~~~~~~~--~~~~~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
+....... .......+... ...+++++||++|+|+++|++.|.+.++
T Consensus 149 l~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~ 199 (203)
T cd01888 149 LVKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIP 199 (203)
T ss_pred ccCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence 97532110 01111111111 1226899999999999999999987664
No 370
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.71 E-value=5.5e-17 Score=156.73 Aligned_cols=139 Identities=17% Similarity=0.113 Sum_probs=94.0
Q ss_pred EcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHHHHHhhcc
Q 007334 330 VGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAH 407 (607)
Q Consensus 330 vG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad 407 (607)
+|.+|||||||+++++... +.....+.+..+.....+.+++ ..+.||||||..++ .. ....+++++|
T Consensus 1 vG~~~vGKTsLi~r~~~~~-f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~---------~~-l~~~~~~~ad 69 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGE-FEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKF---------GG-LRDGYYIQGQ 69 (200)
T ss_pred CCCCCCCHHHHHHHHhcCC-CCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhh---------hh-hhHHHhcCCC
Confidence 6999999999999999653 2222223222344444455544 47789999996433 11 2235788999
Q ss_pred EEEEEeccchhh-----------H--HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEccc
Q 007334 408 VVALVLDAEEVR-----------A--VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSA 474 (607)
Q Consensus 408 ~~llViD~~~~~-----------~--~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA 474 (607)
++|+|+|+++.. . ...+.|+++|+||+|+....... +.+ .+. ...+++++++||
T Consensus 70 ~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~---~~~------~~~----~~~~~~~~e~SA 136 (200)
T smart00176 70 CAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKA---KSI------TFH----RKKNLQYYDISA 136 (200)
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCH---HHH------HHH----HHcCCEEEEEeC
Confidence 999999999861 1 12578999999999986432111 110 111 123578999999
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 007334 475 LEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 475 ~~g~gv~~l~~~i~~~~~ 492 (607)
++|.||.++|.++...+.
T Consensus 137 k~~~~v~~~F~~l~~~i~ 154 (200)
T smart00176 137 KSNYNFEKPFLWLARKLI 154 (200)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999987654
No 371
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.71 E-value=8.4e-17 Score=158.15 Aligned_cols=146 Identities=27% Similarity=0.284 Sum_probs=100.0
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCce------------------------------eecCCCCceeeeEEEEEEEcCeEEE
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRV------------------------------LVGPEAGLTRDSVRVHFEYQGRTVY 375 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~------------------------------~~~~~~gtT~~~~~~~~~~~~~~~~ 375 (607)
.|+++|++++|||||+.+|+..... ......|+|++.....+.+.+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 3899999999999999999632111 1112458999999999999999999
Q ss_pred EEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh-----------------hHHhcC-CcEEEEEeCccCC
Q 007334 376 LVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV-----------------RAVEEG-RGLVVIVNKMDLL 437 (607)
Q Consensus 376 liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~-----------------~~~~~~-~p~ivv~NK~Dl~ 437 (607)
+|||||+.++. ..+..++..+|++|+|+|++++ .....+ +|+|+|+||+|+.
T Consensus 81 liDtpG~~~~~----------~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~ 150 (219)
T cd01883 81 ILDAPGHRDFV----------PNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDV 150 (219)
T ss_pred EEECCChHHHH----------HHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccc
Confidence 99999975431 2334566789999999999872 111234 6899999999998
Q ss_pred CCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHH
Q 007334 438 SGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRI 481 (607)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~ 481 (607)
........++.+.+.+...+...-.....++++++||++|.|++
T Consensus 151 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 151 TVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred cccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 43111222334433333222222111224789999999999986
No 372
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.71 E-value=1.5e-16 Score=176.07 Aligned_cols=150 Identities=24% Similarity=0.324 Sum_probs=106.6
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe-EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR-TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~-~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.+.+|+++|++|+|||||+++|.+.+ ......+|+|.+.....+.+++. .+.||||||+.++. .++ .+
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~-v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~---------~~r-~r 154 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTK-VAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFT---------SMR-AR 154 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCC-cccccCCceeecceEEEEEECCCcEEEEEECCCCcchh---------hHH-Hh
Confidence 45789999999999999999999764 44556778998877777777555 89999999975442 122 24
Q ss_pred HHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhC-CCCCCCCEE
Q 007334 402 NLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVI-PQVTGIPVV 470 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v 470 (607)
++..+|++++|+|++++ .....++|+|+++||+|+.+.. . +.+...+.. ..... ......+++
T Consensus 155 ga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~-~----e~v~~~L~~-~g~~~~~~~~~~~~v 228 (587)
T TIGR00487 155 GAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEAN-P----DRVKQELSE-YGLVPEDWGGDTIFV 228 (587)
T ss_pred hhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCC-H----HHHHHHHHH-hhhhHHhcCCCceEE
Confidence 56789999999999874 2234689999999999996532 1 111111111 00000 001135799
Q ss_pred EcccCCCCCHHHHHHHHHH
Q 007334 471 FTSALEGRGRIAVMHQVID 489 (607)
Q Consensus 471 ~iSA~~g~gv~~l~~~i~~ 489 (607)
++||++|.|++++++.+..
T Consensus 229 ~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 229 PVSALTGDGIDELLDMILL 247 (587)
T ss_pred EEECCCCCChHHHHHhhhh
Confidence 9999999999999998864
No 373
>COG1161 Predicted GTPases [General function prediction only]
Probab=99.71 E-value=1.3e-16 Score=164.90 Aligned_cols=168 Identities=23% Similarity=0.341 Sum_probs=123.8
Q ss_pred HHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhc-CCCCcE
Q 007334 192 RTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLML-GFGDPI 270 (607)
Q Consensus 192 ~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~-~~~~~i 270 (607)
++..+..+.+..+|+|+.|+|++++.+.....+.+++. ++|.++|+||+|+.+... .......+... +. .++
T Consensus 23 k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~----~k~~i~vlNK~DL~~~~~--~~~W~~~~~~~~~~-~~~ 95 (322)
T COG1161 23 KAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVK----EKPKLLVLNKADLAPKEV--TKKWKKYFKKEEGI-KPI 95 (322)
T ss_pred HHHHHHHHhcccCCEEEEEEeccccccccCccHHHHHc----cCCcEEEEehhhcCCHHH--HHHHHHHHHhcCCC-ccE
Confidence 56677888999999999999999998888766666665 446699999999998532 22222333333 33 679
Q ss_pred EeecCCCCChHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhcCCce
Q 007334 271 AISAETGLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRV 350 (607)
Q Consensus 271 ~iSA~~g~gi~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~~~~~ 350 (607)
.+|+.++.+...+..++....++.+...... .......+|++||.||||||||||+|++...+
T Consensus 96 ~v~~~~~~~~~~i~~~~~~~~~~~i~~~~~~-----------------~~~~~~~~v~vvG~PNVGKSslIN~L~~k~~~ 158 (322)
T COG1161 96 FVSAKSRQGGKKIRKALEKLSEEKIKRLKKK-----------------GLLKRKIRVGVVGYPNVGKSTLINRLLGKKVA 158 (322)
T ss_pred EEEeecccCccchHHHHHHHHHHHHHHHhhc-----------------CCCccceEEEEEcCCCCcHHHHHHHHhcccce
Confidence 9999999998888866654433322221110 01123478999999999999999999999999
Q ss_pred eecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccc
Q 007334 351 LVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQRE 386 (607)
Q Consensus 351 ~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~ 386 (607)
.+++.||+|.+....... ..+.|+||||+....
T Consensus 159 ~~s~~PG~Tk~~q~i~~~---~~i~LlDtPGii~~~ 191 (322)
T COG1161 159 KTSNRPGTTKGIQWIKLD---DGIYLLDTPGIIPPK 191 (322)
T ss_pred eeCCCCceecceEEEEcC---CCeEEecCCCcCCCC
Confidence 999999999987765543 348999999987663
No 374
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.71 E-value=1.8e-16 Score=176.75 Aligned_cols=156 Identities=16% Similarity=0.151 Sum_probs=116.4
Q ss_pred EEEEecCCCCchhHHHHHhhccceeee--ccCCCCceeeeeEEEEeee-CCeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALV--YNTPDDHVTRDIREGLAKL-GDLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v--~~~~~~~~T~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.|+++|++|+|||||+++|++.+.... ....| .|.+..+..... ++..+.+|||||++ ++...+.
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rG--iTI~l~~~~~~~~~g~~i~~IDtPGhe----------~fi~~m~ 69 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRG--MTIDLGYAYWPQPDGRVLGFIDVPGHE----------KFLSNML 69 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCC--ceEEeeeEEEecCCCcEEEEEECCCHH----------HHHHHHH
Confidence 689999999999999999997542111 12235 788877666544 46779999999997 5666677
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCc-EEEEecCCCcccCCcCc--HHHHHHHHHhcCC--CCcEEee
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIK-PIVAMNKCESLHNGTGS--LAGAAAESLMLGF--GDPIAIS 273 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p-~ilV~NK~D~~~~~~~~--~~~~~~~~~~~~~--~~~i~iS 273 (607)
..+..+|++++|+|+.++..+++.+...++... ++| +|+|+||+|+.+..... ..+....+...++ .+++++|
T Consensus 70 ~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~l--gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VS 147 (614)
T PRK10512 70 AGVGGIDHALLVVACDDGVMAQTREHLAILQLT--GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTA 147 (614)
T ss_pred HHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEe
Confidence 788999999999999999999888888887766 556 57999999997532111 1112222233343 3689999
Q ss_pred cCCCCChHHHHHHhccch
Q 007334 274 AETGLGMTELYEALRPSV 291 (607)
Q Consensus 274 A~~g~gi~eL~~~i~~~l 291 (607)
|++|.|+++|++.|.+..
T Consensus 148 A~tG~gI~~L~~~L~~~~ 165 (614)
T PRK10512 148 ATEGRGIDALREHLLQLP 165 (614)
T ss_pred CCCCCCCHHHHHHHHHhh
Confidence 999999999999997644
No 375
>CHL00071 tufA elongation factor Tu
Probab=99.71 E-value=1.5e-16 Score=170.49 Aligned_cols=145 Identities=23% Similarity=0.234 Sum_probs=103.8
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCc---------------eeecCCCCceeeeEEEEEEEcCeEEEEEecCCCccccc
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDR---------------VLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREK 387 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~---------------~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~ 387 (607)
..++|+++|++|+|||||+|+|++... .......|+|++.....+.+++.++.|+||||+.++
T Consensus 11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~-- 88 (409)
T CHL00071 11 PHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY-- 88 (409)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH--
Confidence 458999999999999999999997521 112234799999887778888889999999996432
Q ss_pred ccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCc-EEEEEeCccCCCCcCchHHHHHHHHhcHHH
Q 007334 388 EKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRG-LVVIVNKMDLLSGRQNSALYKRVKEAVPQE 456 (607)
Q Consensus 388 ~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p-~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 456 (607)
...+...+..+|++++|+|+..+ .....++| +|+++||||+.+.. +.++.+.+.+...
T Consensus 89 --------~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~---~~~~~~~~~l~~~ 157 (409)
T CHL00071 89 --------VKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDE---ELLELVELEVREL 157 (409)
T ss_pred --------HHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHH---HHHHHHHHHHHHH
Confidence 23345677889999999999865 23346788 77899999997542 2333333344333
Q ss_pred HHhhCCCCCCCCEEEcccCCCCCH
Q 007334 457 IQTVIPQVTGIPVVFTSALEGRGR 480 (607)
Q Consensus 457 ~~~~~~~~~~~~~v~iSA~~g~gv 480 (607)
+...-.....+|++++||++|.|+
T Consensus 158 l~~~~~~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 158 LSKYDFPGDDIPIVSGSALLALEA 181 (409)
T ss_pred HHHhCCCCCcceEEEcchhhcccc
Confidence 332211122489999999999875
No 376
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.70 E-value=1.6e-16 Score=179.73 Aligned_cols=150 Identities=25% Similarity=0.380 Sum_probs=109.5
Q ss_pred cCCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 322 KLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 322 ~~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
..+..|+++|++|+|||||+++|.+.+ ...+..+|+|.+.....+.+++..+.||||||+.++. .++ .+
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~-v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~---------~m~-~r 356 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTN-VAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFT---------AMR-AR 356 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCC-ccccccCceeeeccEEEEEECCEEEEEEECCCCccch---------hHH-Hh
Confidence 356789999999999999999998754 4455677888888777888889999999999975542 122 24
Q ss_pred HHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCC--CCCCCE
Q 007334 402 NLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQ--VTGIPV 469 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 469 (607)
.+..+|++|||||++++ .....++|+|+|+||+|+.... . +.+...+.. ...++. ...+++
T Consensus 357 ga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~-~----e~V~~eL~~--~~~~~e~~g~~vp~ 429 (787)
T PRK05306 357 GAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGAN-P----DRVKQELSE--YGLVPEEWGGDTIF 429 (787)
T ss_pred hhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccC-H----HHHHHHHHH--hcccHHHhCCCceE
Confidence 56779999999999874 2234689999999999996532 1 111111111 001111 123789
Q ss_pred EEcccCCCCCHHHHHHHHHH
Q 007334 470 VFTSALEGRGRIAVMHQVID 489 (607)
Q Consensus 470 v~iSA~~g~gv~~l~~~i~~ 489 (607)
+++||++|.|++++++.+..
T Consensus 430 vpvSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 430 VPVSAKTGEGIDELLEAILL 449 (787)
T ss_pred EEEeCCCCCCchHHHHhhhh
Confidence 99999999999999998864
No 377
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.70 E-value=1.3e-16 Score=148.84 Aligned_cols=145 Identities=21% Similarity=0.299 Sum_probs=101.8
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeE--EEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRT--VYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
||+++|.++||||||+++|.+.. +.....+....+.....+..++.. +.||||+|..+. .... ...+
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~---------~~~~-~~~~ 69 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGE-FPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERF---------DSLR-DIFY 69 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS-TTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGG---------HHHH-HHHH
T ss_pred CEEEECCCCCCHHHHHHHHHhhc-cccccccccccccccccccccccccccccccccccccc---------cccc-cccc
Confidence 69999999999999999999764 222233333367777777777764 669999995332 1122 3467
Q ss_pred hhccEEEEEeccchh-------------hHHhc-CCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCE
Q 007334 404 MRAHVVALVLDAEEV-------------RAVEE-GRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPV 469 (607)
Q Consensus 404 ~~ad~~llViD~~~~-------------~~~~~-~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (607)
..+|++|+|+|.++. ..... +.|++||+||.|+.+..... .+..+.++...+.++
T Consensus 70 ~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~-----------~~~~~~~~~~~~~~~ 138 (162)
T PF00071_consen 70 RNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVS-----------VEEAQEFAKELGVPY 138 (162)
T ss_dssp TTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSC-----------HHHHHHHHHHTTSEE
T ss_pred cccccccccccccccccccccccccccccccccccccceeeeccccccccccch-----------hhHHHHHHHHhCCEE
Confidence 789999999999886 11122 58999999999987632211 111111112235799
Q ss_pred EEcccCCCCCHHHHHHHHHHHHH
Q 007334 470 VFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 470 v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
+++||+++.|+.++|..+++.+.
T Consensus 139 ~e~Sa~~~~~v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 139 FEVSAKNGENVKEIFQELIRKIL 161 (162)
T ss_dssp EEEBTTTTTTHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999987653
No 378
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.70 E-value=2e-16 Score=176.16 Aligned_cols=159 Identities=21% Similarity=0.283 Sum_probs=111.3
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceee--------ecc------CCCCceeeeeEEEEeee-----CCeeEEEecCCC
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREAL--------VYN------TPDDHVTRDIREGLAKL-----GDLRFKVLDSAG 179 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~--------v~~------~~~~~~T~~~~~~~~~~-----~~~~~~liDTpG 179 (607)
.+.+|+|+|+.++|||||+.+|+.....+ +.+ ..| .|.......+.+ .+..++||||||
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerG--iTi~~~~v~~~~~~~dg~~~~lnLiDTPG 83 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERG--ITIKAQAVRLNYKAKDGETYILNLIDTPG 83 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcC--CcccccEEEEEEEccCCCcEEEEEEECCC
Confidence 36789999999999999999998642211 111 112 343333333333 257899999999
Q ss_pred CccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHH
Q 007334 180 LETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAA 259 (607)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~ 259 (607)
+. ++...+..++..+|++|+|+|++++...++.....++... +.|+|+|+||+|+............
T Consensus 84 h~----------dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~--~lpiIvViNKiDl~~a~~~~v~~ei- 150 (600)
T PRK05433 84 HV----------DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN--DLEIIPVLNKIDLPAADPERVKQEI- 150 (600)
T ss_pred cH----------HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC--CCCEEEEEECCCCCcccHHHHHHHH-
Confidence 98 5556667789999999999999999887775544444443 7899999999998653211111111
Q ss_pred HHHhcCC--CCcEEeecCCCCChHHHHHHhccchHH
Q 007334 260 ESLMLGF--GDPIAISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 260 ~~~~~~~--~~~i~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
...+++ .+++++||++|.|+++|+++|.+.++.
T Consensus 151 -~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 151 -EDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred -HHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 122344 247999999999999999999887764
No 379
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.70 E-value=1.6e-16 Score=157.96 Aligned_cols=154 Identities=20% Similarity=0.260 Sum_probs=115.0
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEE-cCeEEEEEecCCCccc-ccccCcchhHHHHHHHHH
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEY-QGRTVYLVDTAGWLQR-EKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~-~~~~~~liDTpG~~~~-~~~~~~~~~~~~~~~~~i 403 (607)
.|++||.||+|||||+++++.. ...+.+||+||..+..+.+.. .+..+.+-|.||+.+. ....+.. .+.+++|
T Consensus 161 DVGLVG~PNaGKSTlls~vS~A-kPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG----~~FLrHI 235 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAA-KPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLG----LRFLRHI 235 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhc-CCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCcc----HHHHHHH
Confidence 5899999999999999999976 577899999999999988886 4557999999999887 3223322 4567899
Q ss_pred hhccEEEEEeccchh-------------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCC
Q 007334 404 MRAHVVALVLDAEEV-------------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQV 464 (607)
Q Consensus 404 ~~ad~~llViD~~~~-------------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (607)
.+|-++++|+|.+.. .....++|.+||+||+|++...+ .++.+.+.+ .+. .
T Consensus 236 ERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e---~~~~~~~~l----~~~---~ 305 (369)
T COG0536 236 ERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEE---ELEELKKAL----AEA---L 305 (369)
T ss_pred HhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHH---HHHHHHHHH----HHh---c
Confidence 999999999999843 11235899999999999765422 222222222 211 1
Q ss_pred CCCCEEEcccCCCCCHHHHHHHHHHHHHHH
Q 007334 465 TGIPVVFTSALEGRGRIAVMHQVIDTYQKW 494 (607)
Q Consensus 465 ~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~ 494 (607)
.+...++|||.+++|+++|...+.+.+.+.
T Consensus 306 ~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 306 GWEVFYLISALTREGLDELLRALAELLEET 335 (369)
T ss_pred CCCcceeeehhcccCHHHHHHHHHHHHHHh
Confidence 223333399999999999999998877654
No 380
>PRK10218 GTP-binding protein; Provisional
Probab=99.70 E-value=3.7e-16 Score=173.14 Aligned_cols=160 Identities=23% Similarity=0.277 Sum_probs=119.9
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeec---------------cCCCCceeeeeEEEEeeeCCeeEEEecCCCCcccc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVY---------------NTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEA 184 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~---------------~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~ 184 (607)
+.+|+|+|+.++|||||+++|+.....+.. ...+ .|.......+.+++.++.+|||||+.
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erG--iTi~~~~~~i~~~~~~inliDTPG~~--- 79 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERG--ITILAKNTAIKWNDYRINIVDTPGHA--- 79 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCc--eEEEEEEEEEecCCEEEEEEECCCcc---
Confidence 578999999999999999999964322111 1223 67777777888899999999999998
Q ss_pred CchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcH-HHHHHHHHh
Q 007334 185 TSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSL-AGAAAESLM 263 (607)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~-~~~~~~~~~ 263 (607)
++...+..++..+|++++|+|++++...+...++.++... ++|.++|+||+|+........ .+....+..
T Consensus 80 -------df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~--gip~IVviNKiD~~~a~~~~vl~ei~~l~~~ 150 (607)
T PRK10218 80 -------DFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAY--GLKPIVVINKVDRPGARPDWVVDQVFDLFVN 150 (607)
T ss_pred -------hhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHc--CCCEEEEEECcCCCCCchhHHHHHHHHHHhc
Confidence 5556677889999999999999998888777777766665 789999999999875433221 222222222
Q ss_pred cCC------CCcEEeecCCCC----------ChHHHHHHhccchHH
Q 007334 264 LGF------GDPIAISAETGL----------GMTELYEALRPSVED 293 (607)
Q Consensus 264 ~~~------~~~i~iSA~~g~----------gi~eL~~~i~~~l~~ 293 (607)
++. .+++++||.+|. |+..|++.|.+.++.
T Consensus 151 l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~ 196 (607)
T PRK10218 151 LDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPA 196 (607)
T ss_pred cCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCC
Confidence 121 257999999998 588899888877764
No 381
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.70 E-value=4.1e-16 Score=150.67 Aligned_cols=168 Identities=16% Similarity=0.161 Sum_probs=117.5
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeecc-CCCCceeeeeEEEEeeeCCeeEEEecCCCCccccC-chhHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYN-TPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEAT-SGSILDRTAGMTAN 199 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~-~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~-~~~~~~~~~~~~~~ 199 (607)
+|+|+|.||||||||+|+|+|.+...+.. .++ +|+++......+.+..+.+|||||+.+... ..............
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~--~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~ 79 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASS--VTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSL 79 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCC--cccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHh
Confidence 69999999999999999999987654432 233 888888888888999999999999985432 12222233333333
Q ss_pred HhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCC---CCcEEEEecCCCcccCCcCc------HHHHHHHHHhcCCCCcE
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAP---QIKPIVAMNKCESLHNGTGS------LAGAAAESLMLGFGDPI 270 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~---~~p~ilV~NK~D~~~~~~~~------~~~~~~~~~~~~~~~~i 270 (607)
.....|++|+|+|+.. .+..+..+++++++.+. -.++++|+|++|........ ...........+- ..+
T Consensus 80 ~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~-r~~ 157 (196)
T cd01852 80 SAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGG-RYV 157 (196)
T ss_pred cCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCC-eEE
Confidence 4567899999999988 88888888888887643 26889999999987643211 0111222222222 222
Q ss_pred Ee-----ecCCCCChHHHHHHhccchHH
Q 007334 271 AI-----SAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 271 ~i-----SA~~g~gi~eL~~~i~~~l~~ 293 (607)
.. |+..+.++.+|++.|.+.+++
T Consensus 158 ~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 158 AFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred EEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 22 467788999999999887764
No 382
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.69 E-value=3e-16 Score=174.12 Aligned_cols=158 Identities=20% Similarity=0.288 Sum_probs=119.5
Q ss_pred CEEEEecCCCCchhHHHHHhhccceee-----ec----------cCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccC
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREAL-----VY----------NTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEAT 185 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~-----v~----------~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~ 185 (607)
.+|+|+|+.++|||||+++|+.....+ +. ...| .|.......+.+.+.++.+|||||+.
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerG--iTI~~~~~~v~~~~~kinlIDTPGh~---- 75 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERG--ITILAKNTAIRYNGTKINIVDTPGHA---- 75 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCC--ccEEeeeEEEEECCEEEEEEECCCHH----
Confidence 579999999999999999998632211 11 1123 67777777788899999999999997
Q ss_pred chhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcH-HHHHHHHHhc
Q 007334 186 SGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSL-AGAAAESLML 264 (607)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~-~~~~~~~~~~ 264 (607)
++...+..++..+|++++|+|++++...+...++.++... ++|+|+|+||+|+...+.... .+....+..+
T Consensus 76 ------DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~--~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~ 147 (594)
T TIGR01394 76 ------DFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALEL--GLKPIVVINKIDRPSARPDEVVDEVFDLFAEL 147 (594)
T ss_pred ------HHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHC--CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhh
Confidence 5666778889999999999999998888877777777765 789999999999875432111 1222222222
Q ss_pred -------CCCCcEEeecCCCC----------ChHHHHHHhccchHH
Q 007334 265 -------GFGDPIAISAETGL----------GMTELYEALRPSVED 293 (607)
Q Consensus 265 -------~~~~~i~iSA~~g~----------gi~eL~~~i~~~l~~ 293 (607)
.+ +++++||++|. |++.|++.|.+.++.
T Consensus 148 g~~~e~l~~-pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 148 GADDEQLDF-PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred ccccccccC-cEEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 23 67999999996 799999999887764
No 383
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.69 E-value=1.8e-16 Score=139.67 Aligned_cols=107 Identities=34% Similarity=0.546 Sum_probs=85.9
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhh
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMR 405 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ 405 (607)
+|+++|.+|+|||||+|+|++.+...+++.+++|++.....+.+++..+.|+||||+.+........ .....+.+.+..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~-~~~~~~~~~~~~ 79 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDG-KEIRKFLEQISK 79 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHH-HHHHHHHHHHCT
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHH-HHHHHHHHHHHH
Confidence 6899999999999999999997778899999999999887888999999999999986652111100 122345667788
Q ss_pred ccEEEEEeccchh---------hHHhcCCcEEEEEeC
Q 007334 406 AHVVALVLDAEEV---------RAVEEGRGLVVIVNK 433 (607)
Q Consensus 406 ad~~llViD~~~~---------~~~~~~~p~ivv~NK 433 (607)
+|++++|+|+.+. ..+..++|+++|+||
T Consensus 80 ~d~ii~vv~~~~~~~~~~~~~~~~l~~~~~~i~v~NK 116 (116)
T PF01926_consen 80 SDLIIYVVDASNPITEDDKNILRELKNKKPIILVLNK 116 (116)
T ss_dssp ESEEEEEEETTSHSHHHHHHHHHHHHTTSEEEEEEES
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHhcCCCEEEEEcC
Confidence 9999999998764 223478999999998
No 384
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.69 E-value=2.9e-16 Score=140.47 Aligned_cols=141 Identities=19% Similarity=0.196 Sum_probs=105.6
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANV 200 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 200 (607)
.+|.+||.+++|||||+++|.+..... . -|....+ .+ .+|||||-.-..+ .+.......
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~-----~--KTq~i~~-----~~---~~IDTPGEyiE~~------~~y~aLi~t 60 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRY-----K--KTQAIEY-----YD---NTIDTPGEYIENP------RFYHALIVT 60 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCc-----C--ccceeEe-----cc---cEEECChhheeCH------HHHHHHHHH
Confidence 479999999999999999999865321 1 2333332 22 4599999763332 455666777
Q ss_pred hhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCCh
Q 007334 201 LAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGM 280 (607)
Q Consensus 201 ~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi 280 (607)
..+||+|++|.|++++.......+.... ++|+|-|+||+|+..+. ...+.....+...|..++|++|+.+|+|+
T Consensus 61 a~dad~V~ll~dat~~~~~~pP~fa~~f-----~~pvIGVITK~Dl~~~~-~~i~~a~~~L~~aG~~~if~vS~~~~eGi 134 (143)
T PF10662_consen 61 AQDADVVLLLQDATEPRSVFPPGFASMF-----NKPVIGVITKIDLPSDD-ANIERAKKWLKNAGVKEIFEVSAVTGEGI 134 (143)
T ss_pred HhhCCEEEEEecCCCCCccCCchhhccc-----CCCEEEEEECccCccch-hhHHHHHHHHHHcCCCCeEEEECCCCcCH
Confidence 8899999999999987665554444332 57999999999998432 23455566777889989999999999999
Q ss_pred HHHHHHhc
Q 007334 281 TELYEALR 288 (607)
Q Consensus 281 ~eL~~~i~ 288 (607)
++|.+.|.
T Consensus 135 ~eL~~~L~ 142 (143)
T PF10662_consen 135 EELKDYLE 142 (143)
T ss_pred HHHHHHHh
Confidence 99999875
No 385
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.69 E-value=6.6e-16 Score=144.22 Aligned_cols=158 Identities=25% Similarity=0.289 Sum_probs=104.8
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCC-ceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccC-cchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQED-RVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKG-PASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~-~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~-~~~~~~~~~~~ 401 (607)
...|+++|++|||||||+|+|+++. -+.++.+||.|+..... ++++. +.++|.||..-...... .+.. .....+
T Consensus 24 ~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff--~~~~~-~~lVDlPGYGyAkv~k~~~e~w-~~~i~~ 99 (200)
T COG0218 24 LPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFF--EVDDE-LRLVDLPGYGYAKVPKEVKEKW-KKLIEE 99 (200)
T ss_pred CcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEE--EecCc-EEEEeCCCcccccCCHHHHHHH-HHHHHH
Confidence 4679999999999999999999965 48899999999886543 34333 88999999754422111 1111 111223
Q ss_pred HHh---hccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 402 NLM---RAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 402 ~i~---~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
|+. .-.++++++|+..+ .....++|+++|+||+|.+...........+. +.+..... ....
T Consensus 100 YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~----~~l~~~~~--~~~~ 173 (200)
T COG0218 100 YLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVA----EELKKPPP--DDQW 173 (200)
T ss_pred HHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHHHHHHHHHH----HHhcCCCC--ccce
Confidence 333 24678889999876 33457999999999999987643322222221 11111111 1112
Q ss_pred EEEcccCCCCCHHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
++..|+.++.|++++...|.+.+
T Consensus 174 ~~~~ss~~k~Gi~~l~~~i~~~~ 196 (200)
T COG0218 174 VVLFSSLKKKGIDELKAKILEWL 196 (200)
T ss_pred EEEEecccccCHHHHHHHHHHHh
Confidence 88999999999998887776654
No 386
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.68 E-value=8.7e-18 Score=143.32 Aligned_cols=149 Identities=20% Similarity=0.200 Sum_probs=107.4
Q ss_pred EEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHHHhhc
Q 007334 329 IVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRA 406 (607)
Q Consensus 329 ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~a 406 (607)
++|.+++|||+|+-++-......-.-++.+..|.....++.++. ++++|||+|+.+++ ..+..+++.|
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfr----------svt~ayyrda 71 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFR----------SVTHAYYRDA 71 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHh----------hhhHhhhccc
Confidence 68999999999988776442222222344566766677777776 56799999976653 3456788999
Q ss_pred cEEEEEeccchh--------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEc
Q 007334 407 HVVALVLDAEEV--------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFT 472 (607)
Q Consensus 407 d~~llViD~~~~--------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i 472 (607)
|++++++|+++. +.....+.+.+++||||+.+++ .+..+.++.++...++|++++
T Consensus 72 ~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er-----------~v~~ddg~kla~~y~ipfmet 140 (192)
T KOG0083|consen 72 DALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHER-----------AVKRDDGEKLAEAYGIPFMET 140 (192)
T ss_pred ceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhh-----------ccccchHHHHHHHHCCCceec
Confidence 999999999875 1123456789999999997642 223333444444558999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHhcCC
Q 007334 473 SALEGRGRIAVMHQVIDTYQKWCLRL 498 (607)
Q Consensus 473 SA~~g~gv~~l~~~i~~~~~~~~~~~ 498 (607)
||++|.|++..|-.|.+.+.+.....
T Consensus 141 saktg~nvd~af~~ia~~l~k~~~~~ 166 (192)
T KOG0083|consen 141 SAKTGFNVDLAFLAIAEELKKLKMGA 166 (192)
T ss_pred cccccccHhHHHHHHHHHHHHhccCC
Confidence 99999999999999988776655443
No 387
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.68 E-value=2.6e-16 Score=152.87 Aligned_cols=148 Identities=21% Similarity=0.236 Sum_probs=93.1
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCC--ceeecCCCCceeeeEEEEEEEc---------------------------C----
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQED--RVLVGPEAGLTRDSVRVHFEYQ---------------------------G---- 371 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~--~~~~~~~~gtT~~~~~~~~~~~---------------------------~---- 371 (607)
+.|+++|+.++|||||+.+|.+.. ...-.-.-|.|.......+.+. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 368999999999999999998652 1111111122322222222221 3
Q ss_pred --eEEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh-----------hHHhcC-CcEEEEEeCccCC
Q 007334 372 --RTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV-----------RAVEEG-RGLVVIVNKMDLL 437 (607)
Q Consensus 372 --~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~-----------~~~~~~-~p~ivv~NK~Dl~ 437 (607)
..+.||||||+.+. ...+..++..+|++++|+|++++ .....+ .|+++|+||+|+.
T Consensus 81 ~~~~i~~iDtPG~~~~----------~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~ 150 (203)
T cd01888 81 LVRHVSFVDCPGHEIL----------MATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLV 150 (203)
T ss_pred cccEEEEEECCChHHH----------HHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhcc
Confidence 68899999995322 23445667789999999999863 111223 4799999999997
Q ss_pred CCcCchHHHHHHHHhcHHHHHhhCCC--CCCCCEEEcccCCCCCHHHHHHHHHHH
Q 007334 438 SGRQNSALYKRVKEAVPQEIQTVIPQ--VTGIPVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
+.......++. +.+.+.. ..+.+++++||++|.|++++++.+.+.
T Consensus 151 ~~~~~~~~~~~--------i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~ 197 (203)
T cd01888 151 KEEQALENYEQ--------IKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKK 197 (203)
T ss_pred CHHHHHHHHHH--------HHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHh
Confidence 53211111111 2222211 235789999999999999999887653
No 388
>PRK12736 elongation factor Tu; Reviewed
Probab=99.68 E-value=3.5e-16 Score=166.93 Aligned_cols=144 Identities=26% Similarity=0.276 Sum_probs=99.3
Q ss_pred cCCceEEEEcCCCCchhHHHHHhhcCC------ce---------eecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccc
Q 007334 322 KLPLQLAIVGRPNVGKSTLLNALLQED------RV---------LVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQRE 386 (607)
Q Consensus 322 ~~~~~v~ivG~~nvGKSslin~l~~~~------~~---------~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~ 386 (607)
++.++|+++|++++|||||+++|++.. .. ......|+|.+.....+..++..+.||||||+.++.
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHHH
Confidence 345899999999999999999998631 11 111266899998777777778899999999964331
Q ss_pred cccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCc-EEEEEeCccCCCCcCchHHHHHHHHhcHH
Q 007334 387 KEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRG-LVVIVNKMDLLSGRQNSALYKRVKEAVPQ 455 (607)
Q Consensus 387 ~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p-~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~ 455 (607)
..+...+..+|++++|+|++++ .....++| +|+++||+|+.+.. +.++.+.+.+..
T Consensus 90 ----------~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~---~~~~~i~~~i~~ 156 (394)
T PRK12736 90 ----------KNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDE---ELLELVEMEVRE 156 (394)
T ss_pred ----------HHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchH---HHHHHHHHHHHH
Confidence 2334566789999999999874 23346888 67899999997532 222323333333
Q ss_pred HHHhhCCCCCCCCEEEcccCCCC
Q 007334 456 EIQTVIPQVTGIPVVFTSALEGR 478 (607)
Q Consensus 456 ~~~~~~~~~~~~~~v~iSA~~g~ 478 (607)
.+...-.....+|++++||++|.
T Consensus 157 ~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T PRK12736 157 LLSEYDFPGDDIPVIRGSALKAL 179 (394)
T ss_pred HHHHhCCCcCCccEEEeeccccc
Confidence 33222111235799999999984
No 389
>PRK00098 GTPase RsgA; Reviewed
Probab=99.68 E-value=2.3e-16 Score=161.81 Aligned_cols=145 Identities=28% Similarity=0.355 Sum_probs=100.2
Q ss_pred HhhccCEEEEEEecCCCCCHhHHHHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGL 278 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~ 278 (607)
.+.++|++++|+|++++..... .+.+|+... ..++|+++|+||+|+..... ........+...++ +++++||++|.
T Consensus 77 iaaniD~vllV~d~~~p~~~~~-~idr~L~~~~~~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~-~v~~vSA~~g~ 153 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTD-LLDRFLVLAEANGIKPIIVLNKIDLLDDLE-EARELLALYRAIGY-DVLELSAKEGE 153 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHH-HHHHHHHHHHHCCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCC-eEEEEeCCCCc
Confidence 4689999999999987654333 122333221 23789999999999963221 11222334445676 78999999999
Q ss_pred ChHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhcCCceeecCCCC-
Q 007334 279 GMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAG- 357 (607)
Q Consensus 279 gi~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~g- 357 (607)
|+++|++.+.. ..++++|.+|||||||+|+|++.....+++.++
T Consensus 154 gi~~L~~~l~g-----------------------------------k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~ 198 (298)
T PRK00098 154 GLDELKPLLAG-----------------------------------KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEA 198 (298)
T ss_pred cHHHHHhhccC-----------------------------------ceEEEECCCCCCHHHHHHHHhCCcCCCCcceecc
Confidence 99999886531 258999999999999999999876665555553
Q ss_pred ------ceeeeEEEEEEEcCeEEEEEecCCCccc
Q 007334 358 ------LTRDSVRVHFEYQGRTVYLVDTAGWLQR 385 (607)
Q Consensus 358 ------tT~~~~~~~~~~~~~~~~liDTpG~~~~ 385 (607)
||+......+ ++ ...|+||||+...
T Consensus 199 ~~~G~htT~~~~~~~~--~~-~~~~~DtpG~~~~ 229 (298)
T PRK00098 199 LGRGKHTTTHVELYDL--PG-GGLLIDTPGFSSF 229 (298)
T ss_pred CCCCCcccccEEEEEc--CC-CcEEEECCCcCcc
Confidence 6655443322 22 2479999998765
No 390
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.68 E-value=6.1e-16 Score=153.41 Aligned_cols=115 Identities=20% Similarity=0.218 Sum_probs=89.2
Q ss_pred EEEEecCCCCchhHHHHHhhccceeee-----c------cCC----CCceeeeeEEEEeeeCCeeEEEecCCCCccccCc
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALV-----Y------NTP----DDHVTRDIREGLAKLGDLRFKVLDSAGLETEATS 186 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v-----~------~~~----~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~ 186 (607)
+|+++|++|+|||||+++|+.....+. . +.. ....|.......+.+.+.++.+|||||+.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~----- 75 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHM----- 75 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCcc-----
Confidence 489999999999999999986532211 0 000 01134555667778889999999999998
Q ss_pred hhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCccc
Q 007334 187 GSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLH 248 (607)
Q Consensus 187 ~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~ 248 (607)
++...+..+++.+|++++|+|++++.......+.+.+.+. ++|+++|+||+|+..
T Consensus 76 -----~f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~--~~P~iivvNK~D~~~ 130 (237)
T cd04168 76 -----DFIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKL--NIPTIIFVNKIDRAG 130 (237)
T ss_pred -----chHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc--CCCEEEEEECccccC
Confidence 4556677889999999999999999887776777777765 789999999999874
No 391
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=1.8e-16 Score=139.37 Aligned_cols=163 Identities=21% Similarity=0.222 Sum_probs=123.4
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee-----------CCeeEEEecCCCCccccCchhH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL-----------GDLRFKVLDSAGLETEATSGSI 189 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~-----------~~~~~~liDTpG~~~~~~~~~~ 189 (607)
.+...+|.+||||||++.+.+..++.. ..-.++..|.....+.+ ..+.+++|||+|++
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~---qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQE-------- 78 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNT---QFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQE-------- 78 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccc---eeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHH--------
Confidence 356778999999999999999776421 11111223333222221 11468999999999
Q ss_pred HHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhh-----CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhc
Q 007334 190 LDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH-----APQIKPIVAMNKCESLHNGTGSLAGAAAESLML 264 (607)
Q Consensus 190 ~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~-----~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~ 264 (607)
++.+.|...+++|=+.++++|.++..++.+ +.+|+.++ ..+.-+++++||+|+...+.+...+..+.+...
T Consensus 79 --RFRSLTTAFfRDAMGFlLiFDlT~eqSFLn--vrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~ky 154 (219)
T KOG0081|consen 79 --RFRSLTTAFFRDAMGFLLIFDLTSEQSFLN--VRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKY 154 (219)
T ss_pred --HHHHHHHHHHHhhccceEEEeccchHHHHH--HHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHh
Confidence 899999999999999999999988766665 55666553 334568999999999998888878888888888
Q ss_pred CCCCcEEeecCCCCChHHHHHHhccchHHHHhhhh
Q 007334 265 GFGDPIAISAETGLGMTELYEALRPSVEDYMLRVL 299 (607)
Q Consensus 265 ~~~~~i~iSA~~g~gi~eL~~~i~~~l~~~~~~~l 299 (607)
|+ +.|++||-+|.++++..+.+.+.+-+.|.+..
T Consensus 155 gl-PYfETSA~tg~Nv~kave~LldlvM~Rie~~v 188 (219)
T KOG0081|consen 155 GL-PYFETSACTGTNVEKAVELLLDLVMKRIEQCV 188 (219)
T ss_pred CC-CeeeeccccCcCHHHHHHHHHHHHHHHHHHHH
Confidence 98 89999999999999988888877766555433
No 392
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.67 E-value=5.2e-17 Score=142.67 Aligned_cols=158 Identities=18% Similarity=0.231 Sum_probs=119.7
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeee--ccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALV--YNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v--~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
.++|+++|..=||||||+-+++..++.-- +.....+.++....+. ....+.||||+|++ ++-..-
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed---~ra~L~IWDTAGQE----------rfHALG 79 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVED---CRADLHIWDTAGQE----------RFHALG 79 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhccccccc---ceeeeeeeeccchH----------hhhccC
Confidence 58999999999999999999998765221 1111122444433322 34578999999999 555555
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhh----CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEee
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH----APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAIS 273 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~----~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iS 273 (607)
..|++.++++++|+|+++..+++. +..|..++ ...+-+++|+||+|+.+.+.+...+....+...|. ..+++|
T Consensus 80 PIYYRgSnGalLVyDITDrdSFqK--VKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA-~y~eTS 156 (218)
T KOG0088|consen 80 PIYYRGSNGALLVYDITDRDSFQK--VKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGA-LYMETS 156 (218)
T ss_pred ceEEeCCCceEEEEeccchHHHHH--HHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhch-hheecc
Confidence 668899999999999999888876 44554443 44677899999999998887777777777777776 789999
Q ss_pred cCCCCChHHHHHHhccchHH
Q 007334 274 AETGLGMTELYEALRPSVED 293 (607)
Q Consensus 274 A~~g~gi~eL~~~i~~~l~~ 293 (607)
|+.+.||.|||+.+...+-+
T Consensus 157 Ak~N~Gi~elFe~Lt~~MiE 176 (218)
T KOG0088|consen 157 AKDNVGISELFESLTAKMIE 176 (218)
T ss_pred cccccCHHHHHHHHHHHHHH
Confidence 99999999999998876544
No 393
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.67 E-value=1.1e-15 Score=144.86 Aligned_cols=147 Identities=20% Similarity=0.250 Sum_probs=104.5
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+..+|+++|.+|+||||++++|.......+.|+.|.. ...+.+++..+.+||.+|.......+ ..+
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~----~~~i~~~~~~~~~~d~gG~~~~~~~w----------~~y 78 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFN----IEEIKYKGYSLTIWDLGGQESFRPLW----------KSY 78 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEE----EEEEEETTEEEEEEEESSSGGGGGGG----------GGG
T ss_pred cEEEEEEECCCccchHHHHHHhhhccccccCcccccc----cceeeeCcEEEEEEeccccccccccc----------eee
Confidence 3579999999999999999999976544444444433 34567789999999999965432211 246
Q ss_pred HhhccEEEEEeccchh---------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV---------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~---------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
+..+|++|+|+|+++. .....++|++|++||.|+.+.....+ +...+. ...+.....+
T Consensus 79 ~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~----i~~~l~---l~~l~~~~~~ 151 (175)
T PF00025_consen 79 FQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEE----IKEYLG---LEKLKNKRPW 151 (175)
T ss_dssp HTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHH----HHHHTT---GGGTTSSSCE
T ss_pred ccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhH----HHhhhh---hhhcccCCce
Confidence 6789999999999975 01124799999999999886543221 211111 1112223456
Q ss_pred CEEEcccCCCCCHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
.++.+||++|+|+.+.+++|.+.
T Consensus 152 ~v~~~sa~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 152 SVFSCSAKTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp EEEEEBTTTTBTHHHHHHHHHHH
T ss_pred EEEeeeccCCcCHHHHHHHHHhc
Confidence 79999999999999999998765
No 394
>CHL00071 tufA elongation factor Tu
Probab=99.67 E-value=6.3e-16 Score=165.75 Aligned_cols=147 Identities=15% Similarity=0.071 Sum_probs=109.0
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceee---------------eccCCCCceeeeeEEEEeeeCCeeEEEecCCCCcccc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREAL---------------VYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEA 184 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~---------------v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~ 184 (607)
..+|+++|++|+|||||+|+|++....+ .....| +|.+.....+..++.++.++||||+.
T Consensus 12 ~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg--~T~~~~~~~~~~~~~~~~~iDtPGh~--- 86 (409)
T CHL00071 12 HVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARG--ITINTAHVEYETENRHYAHVDCPGHA--- 86 (409)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCC--EeEEccEEEEccCCeEEEEEECCChH---
Confidence 4689999999999999999999752211 011244 78887776777778899999999976
Q ss_pred CchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCc-EEEEecCCCcccCCcCc--H-HHHHHH
Q 007334 185 TSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIK-PIVAMNKCESLHNGTGS--L-AGAAAE 260 (607)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p-~ilV~NK~D~~~~~~~~--~-~~~~~~ 260 (607)
++...+...+..+|++++|+|+..+...++.+++..+... ++| +|+|+||+|+....... . .+....
T Consensus 87 -------~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~--g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~ 157 (409)
T CHL00071 87 -------DYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQV--GVPNIVVFLNKEDQVDDEELLELVELEVREL 157 (409)
T ss_pred -------HHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCEEEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence 5666667788999999999999999988888888887776 678 77899999997532210 1 122233
Q ss_pred HHhcCC----CCcEEeecCCCCCh
Q 007334 261 SLMLGF----GDPIAISAETGLGM 280 (607)
Q Consensus 261 ~~~~~~----~~~i~iSA~~g~gi 280 (607)
+...++ .+++++||.+|.++
T Consensus 158 l~~~~~~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 158 LSKYDFPGDDIPIVSGSALLALEA 181 (409)
T ss_pred HHHhCCCCCcceEEEcchhhcccc
Confidence 334443 36799999999743
No 395
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.67 E-value=4.7e-16 Score=174.28 Aligned_cols=152 Identities=20% Similarity=0.337 Sum_probs=104.8
Q ss_pred cCCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEE----cCeEEEEEecCCCcccccccCcchhHHH
Q 007334 322 KLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEY----QGRTVYLVDTAGWLQREKEKGPASLSVM 397 (607)
Q Consensus 322 ~~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~----~~~~~~liDTpG~~~~~~~~~~~~~~~~ 397 (607)
..+..|+++|++|+|||||+++|.+.. ......+|+|.+.....+.+ .+..+.||||||+..+ ..+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~-~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F---------~~m 311 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQ-IAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAF---------SSM 311 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhcc-CccccCCccccccceEEEEEEecCCceEEEEEECCcHHHH---------HHH
Confidence 346789999999999999999999764 33445567777654444443 2478999999996433 222
Q ss_pred HHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCC--CC
Q 007334 398 QSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQ--VT 465 (607)
Q Consensus 398 ~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 465 (607)
..+++..+|++|+|+|++++ .....++|+|+|+||+|+.... . +.+.+.+... ..++. ..
T Consensus 312 -r~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~-~----e~v~~eL~~~--~ll~e~~g~ 383 (742)
T CHL00189 312 -RSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANAN-T----ERIKQQLAKY--NLIPEKWGG 383 (742)
T ss_pred -HHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccC-H----HHHHHHHHHh--ccchHhhCC
Confidence 23567889999999999875 2234689999999999997532 1 1111111100 00011 12
Q ss_pred CCCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 466 GIPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 466 ~~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
.+|++++||++|.|+++|++.+....
T Consensus 384 ~vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 384 DTPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred CceEEEEECCCCCCHHHHHHhhhhhh
Confidence 36899999999999999999887653
No 396
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.67 E-value=1e-15 Score=169.82 Aligned_cols=161 Identities=22% Similarity=0.359 Sum_probs=109.0
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC------C------------eeEEEecCCCCc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG------D------------LRFKVLDSAGLE 181 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~------~------------~~~~liDTpG~~ 181 (607)
.|.|+|+|++|+|||||+|+|.+... ....++. .|++......+.. + ..+.+|||||++
T Consensus 6 ~p~V~i~Gh~~~GKTSLl~~l~~~~v--~~~~~g~-itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e 82 (586)
T PRK04004 6 QPIVVVLGHVDHGKTTLLDKIRGTAV--AAKEAGG-ITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE 82 (586)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccc--ccCCCCc-eEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence 58999999999999999999987643 2333321 3433322111110 0 127899999998
Q ss_pred cccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcC---------
Q 007334 182 TEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTG--------- 252 (607)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~--------- 252 (607)
.+...+...+..+|++++|+|++++...+..+...+++.. +.|+++|+||+|+......
T Consensus 83 ----------~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~--~vpiIvviNK~D~~~~~~~~~~~~~~e~ 150 (586)
T PRK04004 83 ----------AFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRR--KTPFVVAANKIDRIPGWKSTEDAPFLES 150 (586)
T ss_pred ----------HHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHc--CCCEEEEEECcCCchhhhhhcCchHHHH
Confidence 4555556677899999999999998888877777777665 7899999999998632110
Q ss_pred ----------cHH----HHHHHHHhcCC--------------CCcEEeecCCCCChHHHHHHhccchHHHH
Q 007334 253 ----------SLA----GAAAESLMLGF--------------GDPIAISAETGLGMTELYEALRPSVEDYM 295 (607)
Q Consensus 253 ----------~~~----~~~~~~~~~~~--------------~~~i~iSA~~g~gi~eL~~~i~~~l~~~~ 295 (607)
..+ +....+...|+ .+++++||.+|+|+++|++.+....+.++
T Consensus 151 ~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~~~l 221 (586)
T PRK04004 151 IEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQRYL 221 (586)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHHHHHH
Confidence 000 00111222222 25799999999999999998875554433
No 397
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.67 E-value=2.2e-15 Score=147.81 Aligned_cols=157 Identities=20% Similarity=0.245 Sum_probs=105.5
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEe--eeCCeeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLA--KLGDLRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~--~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+++|.+|||||||+++++........ .+. ...+.....+ ..+...+.+|||+|.. ++....
T Consensus 9 ~~kv~liG~~g~GKTtLi~~~~~~~~~~~~-~~t--~~~~~~~~~~~~~~~~i~i~~~Dt~g~~----------~~~~~~ 75 (215)
T PTZ00132 9 EFKLILVGDGGVGKTTFVKRHLTGEFEKKY-IPT--LGVEVHPLKFYTNCGPICFNVWDTAGQE----------KFGGLR 75 (215)
T ss_pred CceEEEECCCCCCHHHHHHHHHhCCCCCCC-CCc--cceEEEEEEEEECCeEEEEEEEECCCch----------hhhhhh
Confidence 468999999999999999887654431111 111 1222222222 2245789999999986 344445
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAET 276 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~ 276 (607)
..++..++++++|+|+++..+..+. .+...+.....+.|+++|+||+|+..... . ..........++ .++++||++
T Consensus 76 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~-~-~~~~~~~~~~~~-~~~e~Sa~~ 152 (215)
T PTZ00132 76 DGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQV-K-ARQITFHRKKNL-QYYDISAKS 152 (215)
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccC-C-HHHHHHHHHcCC-EEEEEeCCC
Confidence 6678899999999999987766542 23333333345789999999999865322 1 222233344455 679999999
Q ss_pred CCChHHHHHHhccchH
Q 007334 277 GLGMTELYEALRPSVE 292 (607)
Q Consensus 277 g~gi~eL~~~i~~~l~ 292 (607)
|.|+++++.+|...+.
T Consensus 153 ~~~v~~~f~~ia~~l~ 168 (215)
T PTZ00132 153 NYNFEKPFLWLARRLT 168 (215)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999887653
No 398
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.67 E-value=7.9e-17 Score=137.49 Aligned_cols=156 Identities=17% Similarity=0.232 Sum_probs=114.1
Q ss_pred EecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHHHHhh
Q 007334 125 IIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTANVLA 202 (607)
Q Consensus 125 ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 202 (607)
++|.+++|||+|+-++-...+ .......++..|.....++.++ .++++|||+|++ ++.+.+..|++
T Consensus 2 llgds~~gktcllir~kdgaf--l~~~fistvgid~rnkli~~~~~kvklqiwdtagqe----------rfrsvt~ayyr 69 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAF--LAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQE----------RFRSVTHAYYR 69 (192)
T ss_pred ccccCccCceEEEEEeccCce--ecCceeeeeeeccccceeccCCcEEEEEEeeccchH----------HHhhhhHhhhc
Confidence 689999999999887754332 2222222244444444444444 578999999999 88999999999
Q ss_pred ccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCCh
Q 007334 203 KTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGM 280 (607)
Q Consensus 203 ~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi 280 (607)
+||.+++++|+.+..++.+. .++..+.+. .....+.+++||||+.+++.+..++....+...++ ++.++||++|.++
T Consensus 70 da~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~i-pfmetsaktg~nv 148 (192)
T KOG0083|consen 70 DADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGI-PFMETSAKTGFNV 148 (192)
T ss_pred ccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCC-CceeccccccccH
Confidence 99999999999998888762 233333332 22467889999999988766555555555555666 7799999999999
Q ss_pred HHHHHHhccchHH
Q 007334 281 TELYEALRPSVED 293 (607)
Q Consensus 281 ~eL~~~i~~~l~~ 293 (607)
+-.|-.|.+.+..
T Consensus 149 d~af~~ia~~l~k 161 (192)
T KOG0083|consen 149 DLAFLAIAEELKK 161 (192)
T ss_pred hHHHHHHHHHHHH
Confidence 9999988876654
No 399
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.67 E-value=1.3e-15 Score=151.12 Aligned_cols=154 Identities=24% Similarity=0.334 Sum_probs=107.7
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceee-----------------cCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccc
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLV-----------------GPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKE 388 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~-----------------~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~ 388 (607)
.|+++|++|+|||||+++|+.....+. ....|+|.......+.+++.++.+|||||+.++.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~-- 78 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFI-- 78 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchH--
Confidence 389999999999999999986432211 1123556666667788999999999999975542
Q ss_pred cCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhc-----
Q 007334 389 KGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAV----- 453 (607)
Q Consensus 389 ~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~----- 453 (607)
..+..+++.+|++++|+|++++ .....++|+++++||+|+.... ....++.+++.+
T Consensus 79 --------~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a~-~~~~~~~i~~~~~~~~~ 149 (237)
T cd04168 79 --------AEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGAD-LEKVYQEIKEKLSSDIV 149 (237)
T ss_pred --------HHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCCC-HHHHHHHHHHHHCCCeE
Confidence 2345688899999999999876 2234689999999999987532 122222222211
Q ss_pred -----------------------------------------------HHHHHhhCCCCCCCCEEEcccCCCCCHHHHHHH
Q 007334 454 -----------------------------------------------PQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQ 486 (607)
Q Consensus 454 -----------------------------------------------~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~ 486 (607)
...+.+......-+|++..||.++.|+..|++.
T Consensus 150 ~~~~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~ 229 (237)
T cd04168 150 PMQKVGLAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEG 229 (237)
T ss_pred EEECCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHH
Confidence 111112222344579999999999999999998
Q ss_pred HHHH
Q 007334 487 VIDT 490 (607)
Q Consensus 487 i~~~ 490 (607)
+.+.
T Consensus 230 ~~~~ 233 (237)
T cd04168 230 ITKL 233 (237)
T ss_pred HHHh
Confidence 8764
No 400
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.67 E-value=4.6e-16 Score=149.14 Aligned_cols=154 Identities=21% Similarity=0.242 Sum_probs=95.0
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
.||+++|.+|||||||+++|..... . ..+..++.+.....+.+++. .+.+|||||...... .. ...
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~-~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~---------~~-~~~ 69 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEF-P-EEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYER---------LR-PLS 69 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-C-cccCCcccceEEEEEEECCEEEEEEEEECCCChhccc---------cc-hhh
Confidence 4899999999999999999985432 1 22223344444445555554 467999999654321 00 124
Q ss_pred HhhccEEEEEeccchh--------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC-C
Q 007334 403 LMRAHVVALVLDAEEV--------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG-I 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~--------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 467 (607)
+..+|++++|+|.++. .......|+|+|+||+|+.+........ ...+.+..+..+.++...+ .
T Consensus 70 ~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 148 (187)
T cd04129 70 YSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEY-RTQRFVPIQQGKRVAKEIGAK 148 (187)
T ss_pred cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCccccccc-ccCCcCCHHHHHHHHHHhCCc
Confidence 5689999999999865 0112368999999999986431100000 0000000011111111123 4
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+++++||++|.|++++|+.+.+..
T Consensus 149 ~~~e~Sa~~~~~v~~~f~~l~~~~ 172 (187)
T cd04129 149 KYMECSALTGEGVDDVFEAATRAA 172 (187)
T ss_pred EEEEccCCCCCCHHHHHHHHHHHH
Confidence 799999999999999999988654
No 401
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.67 E-value=4.7e-16 Score=149.13 Aligned_cols=147 Identities=22% Similarity=0.249 Sum_probs=113.3
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeE--EEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRT--VYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
..+|+++|.+|||||+|+.++++. ..+..+.+|..|.+...+.+++.. +.|+||+|..+ ++.++ ..
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~--~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~---------~~~~~-~~ 70 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTG--RFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEE---------FSAMR-DL 70 (196)
T ss_pred ceEEEEECCCCCCcchheeeeccc--ccccccCCCccccceEEEEECCEEEEEEEEcCCCccc---------ChHHH-HH
Confidence 368999999999999999999976 445667788888888888888764 55999999433 33333 35
Q ss_pred HHhhccEEEEEeccchh-----------hH----HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEV-----------RA----VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~-----------~~----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
+++.+|++++||++++. .. .....|+++|+||+|+...+ .+..+.++.++..++
T Consensus 71 ~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R-----------~V~~eeg~~la~~~~ 139 (196)
T KOG0395|consen 71 YIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERER-----------QVSEEEGKALARSWG 139 (196)
T ss_pred hhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhcc-----------ccCHHHHHHHHHhcC
Confidence 78899999999999986 11 11357999999999998642 233334444455668
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
++++++||+...+++++|..+.+....
T Consensus 140 ~~f~E~Sak~~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 140 CAFIETSAKLNYNVDEVFYELVREIRL 166 (196)
T ss_pred CcEEEeeccCCcCHHHHHHHHHHHHHh
Confidence 899999999999999999999887654
No 402
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.67 E-value=7.8e-16 Score=171.26 Aligned_cols=147 Identities=28% Similarity=0.426 Sum_probs=102.7
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCcee--------ec------CCCCceeeeEEEEEEEc---C--eEEEEEecCCCccc
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVL--------VG------PEAGLTRDSVRVHFEYQ---G--RTVYLVDTAGWLQR 385 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~--------~~------~~~gtT~~~~~~~~~~~---~--~~~~liDTpG~~~~ 385 (607)
.+++++|++++|||||+++|+.....+ +. ...|+|.+.....+.|. + ..+.||||||+.++
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 479999999999999999998643211 11 23478887766666653 3 57889999998654
Q ss_pred ccccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHH
Q 007334 386 EKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQ 455 (607)
Q Consensus 386 ~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~ 455 (607)
. ..+.+++..||++|+|+|++++ .....++|+|+|+||+|+.... .. ...+
T Consensus 84 ~----------~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~-~~----~~~~---- 144 (595)
T TIGR01393 84 S----------YEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSAD-PE----RVKK---- 144 (595)
T ss_pred H----------HHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccC-HH----HHHH----
Confidence 2 2344678899999999999875 2234689999999999986432 11 1111
Q ss_pred HHHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 456 EIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 456 ~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
++.+.+. ....+++++||++|.|++++|+.+.+.+
T Consensus 145 el~~~lg-~~~~~vi~vSAktG~GI~~Lle~I~~~l 179 (595)
T TIGR01393 145 EIEEVIG-LDASEAILASAKTGIGIEEILEAIVKRV 179 (595)
T ss_pred HHHHHhC-CCcceEEEeeccCCCCHHHHHHHHHHhC
Confidence 2222211 1123589999999999999999887653
No 403
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.66 E-value=4.7e-16 Score=152.84 Aligned_cols=149 Identities=22% Similarity=0.245 Sum_probs=101.6
Q ss_pred EEEEecCCCCchhHHHHHhhccceee------------------------eccC----CCCceeeeeEEEEeeeCCeeEE
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREAL------------------------VYNT----PDDHVTRDIREGLAKLGDLRFK 173 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~------------------------v~~~----~~~~~T~~~~~~~~~~~~~~~~ 173 (607)
+|+++|++++|||||+.+|+.....+ +.+. ....+|++.....+.+.+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 48999999999999999997321110 0010 0133889998888889999999
Q ss_pred EecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCC-------CCHhHHHHHHHHHhhCCCCcEEEEecCCCc
Q 007334 174 VLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSG-------LHPLDLEVGKWLRKHAPQIKPIVAMNKCES 246 (607)
Q Consensus 174 liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~-------~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~ 246 (607)
+|||||+. .+...+...+..+|++++|+|++++ ...+..+....+... ..+|+++|+||+|+
T Consensus 81 liDtpG~~----------~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiivvNK~Dl 149 (219)
T cd01883 81 ILDAPGHR----------DFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTL-GVKQLIVAVNKMDD 149 (219)
T ss_pred EEECCChH----------HHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHc-CCCeEEEEEEcccc
Confidence 99999986 4455566778899999999999984 333333444444433 23688999999999
Q ss_pred ccCC--cCcHHHHH----HHHHhcCC----CCcEEeecCCCCChH
Q 007334 247 LHNG--TGSLAGAA----AESLMLGF----GDPIAISAETGLGMT 281 (607)
Q Consensus 247 ~~~~--~~~~~~~~----~~~~~~~~----~~~i~iSA~~g~gi~ 281 (607)
.... ........ ..+...++ .+++++||++|.|++
T Consensus 150 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 150 VTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred ccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 8421 11111111 12344444 258999999999987
No 404
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=4.6e-16 Score=162.13 Aligned_cols=168 Identities=20% Similarity=0.219 Sum_probs=130.1
Q ss_pred ccccccCCCEEEEecCCCCchhHHHHHhhccceee--------------eccCCCCceeeeeEEEEeeeCC---eeEEEe
Q 007334 113 TKIDINLLPTVMIIGRPNVGKSALFNRLIRRREAL--------------VYNTPDDHVTRDIREGLAKLGD---LRFKVL 175 (607)
Q Consensus 113 ~~~~~~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~--------------v~~~~~~~~T~~~~~~~~~~~~---~~~~li 175 (607)
...+.+++.+++||.+-..|||||..+|+.....+ +....| .|...+...+.+.+ +.+++|
T Consensus 53 ~~~P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERG--ITIkaQtasify~~~~~ylLNLI 130 (650)
T KOG0462|consen 53 SLDPVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERG--ITIKAQTASIFYKDGQSYLLNLI 130 (650)
T ss_pred ccCchhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcC--cEEEeeeeEEEEEcCCceEEEee
Confidence 44455667899999999999999999998543211 222334 66666655555555 889999
Q ss_pred cCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHH
Q 007334 176 DSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLA 255 (607)
Q Consensus 176 DTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~ 255 (607)
||||+. +|.......+..+|++|+|+|+++|...+....+...-+. +..+|.|+||+|+...+.+..+
T Consensus 131 DTPGHv----------DFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~--~L~iIpVlNKIDlp~adpe~V~ 198 (650)
T KOG0462|consen 131 DTPGHV----------DFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA--GLAIIPVLNKIDLPSADPERVE 198 (650)
T ss_pred cCCCcc----------cccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc--CCeEEEeeeccCCCCCCHHHHH
Confidence 999999 4556666778889999999999999999985544333333 7899999999999987766556
Q ss_pred HHHHHHHhcCCCCcEEeecCCCCChHHHHHHhccchHHH
Q 007334 256 GAAAESLMLGFGDPIAISAETGLGMTELYEALRPSVEDY 294 (607)
Q Consensus 256 ~~~~~~~~~~~~~~i~iSA~~g~gi~eL~~~i~~~l~~~ 294 (607)
....+...+...+++.+||++|.|+++++++|.+.++.+
T Consensus 199 ~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rVPpP 237 (650)
T KOG0462|consen 199 NQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRVPPP 237 (650)
T ss_pred HHHHHHhcCCccceEEEEeccCccHHHHHHHHHhhCCCC
Confidence 666666666666899999999999999999999988753
No 405
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.66 E-value=3.5e-16 Score=148.21 Aligned_cols=153 Identities=20% Similarity=0.140 Sum_probs=107.9
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
..+|+++|..|+|||||+++|.......+. .|.......+.+.+..+.+||.+|.. .+...+..
T Consensus 14 ~~~ililGl~~sGKTtll~~l~~~~~~~~~------pT~g~~~~~i~~~~~~~~~~d~gG~~----------~~~~~w~~ 77 (175)
T PF00025_consen 14 EIKILILGLDGSGKTTLLNRLKNGEISETI------PTIGFNIEEIKYKGYSLTIWDLGGQE----------SFRPLWKS 77 (175)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHSSSEEEEE------EESSEEEEEEEETTEEEEEEEESSSG----------GGGGGGGG
T ss_pred EEEEEEECCCccchHHHHHHhhhccccccC------cccccccceeeeCcEEEEEEeccccc----------ccccccee
Confidence 468999999999999999999876543221 35556667777899999999999987 33344556
Q ss_pred HhhccCEEEEEEecCCCCCHhH--HHHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHH--HhcC---CCCcEE
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLD--LEVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAES--LMLG---FGDPIA 271 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~--~~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~--~~~~---~~~~i~ 271 (607)
++..+|++|||+|+++.....+ .++.+.+... ..+.|+++++||+|+...-. .++....+ ..+. ...++.
T Consensus 78 y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~--~~~i~~~l~l~~l~~~~~~~v~~ 155 (175)
T PF00025_consen 78 YFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMS--EEEIKEYLGLEKLKNKRPWSVFS 155 (175)
T ss_dssp GHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSST--HHHHHHHTTGGGTTSSSCEEEEE
T ss_pred eccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcch--hhHHHhhhhhhhcccCCceEEEe
Confidence 7889999999999997543332 2233444322 34789999999999876422 22222111 1221 114689
Q ss_pred eecCCCCChHHHHHHhccc
Q 007334 272 ISAETGLGMTELYEALRPS 290 (607)
Q Consensus 272 iSA~~g~gi~eL~~~i~~~ 290 (607)
+||.+|+|+.+.+++|.+.
T Consensus 156 ~sa~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 156 CSAKTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp EBTTTTBTHHHHHHHHHHH
T ss_pred eeccCCcCHHHHHHHHHhc
Confidence 9999999999999998764
No 406
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.66 E-value=3.2e-15 Score=157.43 Aligned_cols=153 Identities=16% Similarity=0.116 Sum_probs=103.0
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANV 200 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 200 (607)
.+|+|||..|||||||+-+|+...+ +...|.. ..+-.....+........++||+.-. +........
T Consensus 10 VRIvliGD~G~GKtSLImSL~~eef--~~~VP~r-l~~i~IPadvtPe~vpt~ivD~ss~~----------~~~~~l~~E 76 (625)
T KOG1707|consen 10 VRIVLIGDEGVGKTSLIMSLLEEEF--VDAVPRR-LPRILIPADVTPENVPTSIVDTSSDS----------DDRLCLRKE 76 (625)
T ss_pred eEEEEECCCCccHHHHHHHHHhhhc--ccccccc-CCccccCCccCcCcCceEEEeccccc----------chhHHHHHH
Confidence 5899999999999999999998765 2222210 11111223333356678999998544 233445678
Q ss_pred hhccCEEEEEEecCCCCCHhHH--HHHHHHHhhC---CCCcEEEEecCCCcccCCcCcHHH----HHHHHHhcCCCCcEE
Q 007334 201 LAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHA---PQIKPIVAMNKCESLHNGTGSLAG----AAAESLMLGFGDPIA 271 (607)
Q Consensus 201 ~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~~---~~~p~ilV~NK~D~~~~~~~~~~~----~~~~~~~~~~~~~i~ 271 (607)
++.||++++|++++++.+.... .|+-.+++.. .+.|+|+|+||+|+........+. .+..+.. ....++
T Consensus 77 irkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~E--iEtcie 154 (625)
T KOG1707|consen 77 IRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAE--IETCIE 154 (625)
T ss_pred HhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHH--HHHHHh
Confidence 8999999999999887665543 2445556654 579999999999998765442222 2222222 224689
Q ss_pred eecCCCCChHHHHHHhc
Q 007334 272 ISAETGLGMTELYEALR 288 (607)
Q Consensus 272 iSA~~g~gi~eL~~~i~ 288 (607)
+||++-.++.|+|..-.
T Consensus 155 cSA~~~~n~~e~fYyaq 171 (625)
T KOG1707|consen 155 CSALTLANVSELFYYAQ 171 (625)
T ss_pred hhhhhhhhhHhhhhhhh
Confidence 99999999988876543
No 407
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.66 E-value=1.4e-15 Score=138.42 Aligned_cols=151 Identities=21% Similarity=0.190 Sum_probs=100.3
Q ss_pred EecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee--CCeeEEEecCCCCccccCchhHHHHHHHHHHHHhh
Q 007334 125 IIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL--GDLRFKVLDSAGLETEATSGSILDRTAGMTANVLA 202 (607)
Q Consensus 125 ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 202 (607)
++|.+|+|||||+|+|++.... ...... +..+........ .+..+.+|||||+. .........+.
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~-~~~~~~--t~~~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~~~~~~~~~ 67 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFV-PEEYET--TIIDFYSKTIEVDGKKVKLQIWDTAGQE----------RFRSLRRLYYR 67 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcC-Cccccc--chhheeeEEEEECCEEEEEEEEecCChH----------HHHhHHHHHhc
Confidence 5899999999999999987642 111111 222222222222 36789999999987 33334466788
Q ss_pred ccCEEEEEEecCCCCCHhHHHHH---HHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCC
Q 007334 203 KTQFAIFMIDVRSGLHPLDLEVG---KWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLG 279 (607)
Q Consensus 203 ~ad~vl~VvD~s~~~~~~~~~~~---~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~g 279 (607)
.+|++++|+|++++....+.... ........+.|+++|+||+|+.....................+++++||.++.|
T Consensus 68 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 147 (157)
T cd00882 68 GADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGEN 147 (157)
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCC
Confidence 99999999999987665553321 111222457999999999998865432222112223333344789999999999
Q ss_pred hHHHHHHhc
Q 007334 280 MTELYEALR 288 (607)
Q Consensus 280 i~eL~~~i~ 288 (607)
+++++++|.
T Consensus 148 i~~~~~~l~ 156 (157)
T cd00882 148 VEELFEELA 156 (157)
T ss_pred hHHHHHHHh
Confidence 999999875
No 408
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.66 E-value=7.9e-16 Score=157.03 Aligned_cols=143 Identities=28% Similarity=0.415 Sum_probs=98.9
Q ss_pred HhhccCEEEEEEecCCCC-CHhHHHHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCC
Q 007334 200 VLAKTQFAIFMIDVRSGL-HPLDLEVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETG 277 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~-~~~~~~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g 277 (607)
.+.++|.+++|+|+.++. +... +.+|+... ..++|+++|+||+|+..... ...........++ +++++||++|
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~--ldr~L~~~~~~~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~-~v~~vSA~~g 149 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRL--LDRYLVAAEAAGIEPVIVLTKADLLDDEE--EELELVEALALGY-PVLAVSAKTG 149 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHH--HHHHHHHHHHcCCCEEEEEEHHHCCChHH--HHHHHHHHHhCCC-eEEEEECCCC
Confidence 478899999999999876 4333 23344321 23789999999999975411 1112222344566 7899999999
Q ss_pred CChHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhcCCceeecCCC-
Q 007334 278 LGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEA- 356 (607)
Q Consensus 278 ~gi~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~- 356 (607)
.|+++|++.|.. ..++++|++|||||||+|.|++.....++..+
T Consensus 150 ~gi~~L~~~L~~-----------------------------------k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~ 194 (287)
T cd01854 150 EGLDELREYLKG-----------------------------------KTSVLVGQSGVGKSTLINALLPDLDLATGEISE 194 (287)
T ss_pred ccHHHHHhhhcc-----------------------------------ceEEEECCCCCCHHHHHHHHhchhhccccceec
Confidence 999998876542 25899999999999999999987654443332
Q ss_pred ------CceeeeEEEEEEEcCeEEEEEecCCCccc
Q 007334 357 ------GLTRDSVRVHFEYQGRTVYLVDTAGWLQR 385 (607)
Q Consensus 357 ------gtT~~~~~~~~~~~~~~~~liDTpG~~~~ 385 (607)
+||++.....+... ..++||||+.++
T Consensus 195 ~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~ 226 (287)
T cd01854 195 KLGRGRHTTTHRELFPLPGG---GLLIDTPGFREF 226 (287)
T ss_pred cCCCCCcccceEEEEEcCCC---CEEEECCCCCcc
Confidence 36666543333212 369999998665
No 409
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.66 E-value=2.2e-15 Score=147.99 Aligned_cols=153 Identities=18% Similarity=0.186 Sum_probs=104.4
Q ss_pred EEEEecCCCCchhHHHHHhhcccee------ee--c-----cCCCCc----------------------eeeeeEEEEee
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREA------LV--Y-----NTPDDH----------------------VTRDIREGLAK 166 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~------~v--~-----~~~~~~----------------------~T~~~~~~~~~ 166 (607)
+|+++|..++|||||+++|+..... .. . ...|.+ .+.+......+
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 4899999999999999999853220 00 0 000100 00000012234
Q ss_pred eCCeeEEEecCCCCccccCchhHHHHHHHHHHHHhh--ccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCC
Q 007334 167 LGDLRFKVLDSAGLETEATSGSILDRTAGMTANVLA--KTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKC 244 (607)
Q Consensus 167 ~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~--~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~ 244 (607)
..+..+.++||||+. ++...+...+. .+|++++|+|+..+....+.+++.++... ++|+++|+||+
T Consensus 81 ~~~~~i~liDtpG~~----------~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~--~ip~ivvvNK~ 148 (224)
T cd04165 81 KSSKLVTFIDLAGHE----------RYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALAL--NIPVFVVVTKI 148 (224)
T ss_pred eCCcEEEEEECCCcH----------HHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCEEEEEECc
Confidence 467889999999987 45555555554 78999999999999999998899999887 78999999999
Q ss_pred CcccCCcCcHHHHHH----HHHhcC-------------------------CCCcEEeecCCCCChHHHHHHhc
Q 007334 245 ESLHNGTGSLAGAAA----ESLMLG-------------------------FGDPIAISAETGLGMTELYEALR 288 (607)
Q Consensus 245 D~~~~~~~~~~~~~~----~~~~~~-------------------------~~~~i~iSA~~g~gi~eL~~~i~ 288 (607)
|+.+... ...... .+...| ..+++++||.+|+|+++|.+.|.
T Consensus 149 D~~~~~~--~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 149 DLAPANI--LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred cccCHHH--HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 9875321 111111 111111 22679999999999999998775
No 410
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.66 E-value=8.7e-16 Score=154.98 Aligned_cols=142 Identities=17% Similarity=0.135 Sum_probs=103.0
Q ss_pred EEEEecCCCCchhHHHHHhhccce-----eeec------------cCCCCceeeeeEEEEeeeCCeeEEEecCCCCcccc
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRRE-----ALVY------------NTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEA 184 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~-----~~v~------------~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~ 184 (607)
+|+|+|++|+|||||+|+|+.... ..+. ...+ +|.+.....+.+.+.++.+|||||+.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg--iti~~~~~~~~~~~~~i~liDTPG~~--- 75 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERG--ITIQSAATTCFWKDHRINIIDTPGHV--- 75 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCC--cCeeccEEEEEECCEEEEEEECCCcH---
Confidence 489999999999999999974211 1111 1223 77888888888999999999999987
Q ss_pred CchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHh-
Q 007334 185 TSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLM- 263 (607)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~- 263 (607)
++...+..++..+|++++|+|+..+....+..+.+.+... ++|+++++||+|+.................
T Consensus 76 -------df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~--~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~ 146 (270)
T cd01886 76 -------DFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRY--NVPRIAFVNKMDRTGADFFRVVEQIREKLGA 146 (270)
T ss_pred -------HHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHc--CCCEEEEEECCCCCCCCHHHHHHHHHHHhCC
Confidence 4556677889999999999999999888887777777766 789999999999875322111122222222
Q ss_pred cCCCCcEEeecCCC
Q 007334 264 LGFGDPIAISAETG 277 (607)
Q Consensus 264 ~~~~~~i~iSA~~g 277 (607)
..+...+|+||..+
T Consensus 147 ~~~~~~~Pisa~~~ 160 (270)
T cd01886 147 NPVPLQLPIGEEDD 160 (270)
T ss_pred CceEEEeccccCCC
Confidence 12234578887633
No 411
>PRK12735 elongation factor Tu; Reviewed
Probab=99.66 E-value=1.2e-15 Score=163.03 Aligned_cols=143 Identities=22% Similarity=0.258 Sum_probs=98.5
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcC------Cce---------eecCCCCceeeeEEEEEEEcCeEEEEEecCCCccccc
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQE------DRV---------LVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREK 387 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~------~~~---------~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~ 387 (607)
+.++|+++|++|+|||||+++|++. ... ......|+|.+.....++.++.++.|+||||+.++
T Consensus 11 ~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f-- 88 (396)
T PRK12735 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY-- 88 (396)
T ss_pred CeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHH--
Confidence 4589999999999999999999962 111 11225689999877777778889999999997432
Q ss_pred ccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEE-EEEeCccCCCCcCchHHHHHHHHhcHHH
Q 007334 388 EKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLV-VIVNKMDLLSGRQNSALYKRVKEAVPQE 456 (607)
Q Consensus 388 ~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~i-vv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 456 (607)
...+...+..+|++++|+|+.++ .....++|.+ +|+||+|+.+.. +.++.+...+...
T Consensus 89 --------~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~---~~~~~~~~ei~~~ 157 (396)
T PRK12735 89 --------VKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDE---ELLELVEMEVREL 157 (396)
T ss_pred --------HHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchH---HHHHHHHHHHHHH
Confidence 13344667789999999999874 2234578866 579999997532 2233332233222
Q ss_pred HHhhCCC-CCCCCEEEcccCCCCC
Q 007334 457 IQTVIPQ-VTGIPVVFTSALEGRG 479 (607)
Q Consensus 457 ~~~~~~~-~~~~~~v~iSA~~g~g 479 (607)
+.. +.. ...++++++||++|.|
T Consensus 158 l~~-~~~~~~~~~ii~~Sa~~g~n 180 (396)
T PRK12735 158 LSK-YDFPGDDTPIIRGSALKALE 180 (396)
T ss_pred HHH-cCCCcCceeEEecchhcccc
Confidence 221 111 1247999999999975
No 412
>PRK12736 elongation factor Tu; Reviewed
Probab=99.65 E-value=1.3e-15 Score=162.42 Aligned_cols=159 Identities=16% Similarity=0.108 Sum_probs=114.3
Q ss_pred CCEEEEecCCCCchhHHHHHhhcccee------e---------eccCCCCceeeeeEEEEeeeCCeeEEEecCCCCcccc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREA------L---------VYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEA 184 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~------~---------v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~ 184 (607)
..+|+++|++++|||||+++|++.... . .....| +|.+.....+..++..+.+|||||+.
T Consensus 12 ~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg--~T~~~~~~~~~~~~~~i~~iDtPGh~--- 86 (394)
T PRK12736 12 HVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERG--ITINTAHVEYETEKRHYAHVDCPGHA--- 86 (394)
T ss_pred eeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcC--ccEEEEeeEecCCCcEEEEEECCCHH---
Confidence 468999999999999999999863110 0 011334 78888766666677889999999987
Q ss_pred CchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCc-EEEEecCCCcccCCcCc--HH-HHHHH
Q 007334 185 TSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIK-PIVAMNKCESLHNGTGS--LA-GAAAE 260 (607)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p-~ilV~NK~D~~~~~~~~--~~-~~~~~ 260 (607)
++...+...+..+|++++|+|+..+...++.+++.++... ++| +|+|+||+|+...+... .. +....
T Consensus 87 -------~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~--g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~ 157 (394)
T PRK12736 87 -------DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQV--GVPYLVVFLNKVDLVDDEELLELVEMEVREL 157 (394)
T ss_pred -------HHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc--CCCEEEEEEEecCCcchHHHHHHHHHHHHHH
Confidence 5556667777899999999999999888888888888776 678 67899999987432211 11 12222
Q ss_pred HHhcCC----CCcEEeecCCCC--------ChHHHHHHhccchH
Q 007334 261 SLMLGF----GDPIAISAETGL--------GMTELYEALRPSVE 292 (607)
Q Consensus 261 ~~~~~~----~~~i~iSA~~g~--------gi~eL~~~i~~~l~ 292 (607)
+...++ .+++++||.+|. ++.+|++.|.+.++
T Consensus 158 l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 158 LSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred HHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 333444 267999999983 56777777665543
No 413
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.65 E-value=1.8e-15 Score=167.07 Aligned_cols=156 Identities=18% Similarity=0.265 Sum_probs=96.8
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCC-CceeeeEEEEEEEc------------------CeEEEEEecCCCcc
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEA-GLTRDSVRVHFEYQ------------------GRTVYLVDTAGWLQ 384 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~-gtT~~~~~~~~~~~------------------~~~~~liDTpG~~~ 384 (607)
+.-|+++|++|+|||||+|+|++... ....+ |+|++.....+.++ ...+.||||||+..
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v--~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~ 81 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAV--AKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEA 81 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccc--ccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHh
Confidence 34699999999999999999998632 22333 35554222222211 12488999999643
Q ss_pred cccccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcC---chHHHH---H
Q 007334 385 REKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQ---NSALYK---R 448 (607)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~---~~~~~~---~ 448 (607)
+ ..++ ..++..+|++++|+|++++ .....++|+++|+||+|+..... ....++ +
T Consensus 82 f---------~~l~-~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak 151 (590)
T TIGR00491 82 F---------TNLR-KRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEGRPFMESFSK 151 (590)
T ss_pred H---------HHHH-HHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccCchHHHHHHh
Confidence 3 2222 3466789999999999874 22345899999999999974210 000000 0
Q ss_pred ----HHH-------hcHHHHHhh---------C-CCCCCCCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 449 ----VKE-------AVPQEIQTV---------I-PQVTGIPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 449 ----~~~-------~~~~~~~~~---------~-~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+.. .+..++.+. . .....++++++||++|+|+++|++.+....
T Consensus 152 ~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 152 QEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence 000 000111110 0 122357999999999999999998876543
No 414
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.65 E-value=1.3e-15 Score=169.78 Aligned_cols=149 Identities=21% Similarity=0.254 Sum_probs=104.4
Q ss_pred eEEEEcCCCCchhHHHHHhhcCC--ceeecCCCCceeeeEEEEEEE-cCeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 326 QLAIVGRPNVGKSTLLNALLQED--RVLVGPEAGLTRDSVRVHFEY-QGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~--~~~~~~~~gtT~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
-|+++|++++|||||+++|+|.+ +.......|+|.+.....+.. ++..+.||||||+.++ . ..+...
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~f---------i-~~m~~g 71 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKF---------L-SNMLAG 71 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHH---------H-HHHHHH
Confidence 48999999999999999999853 333445569999877666554 5678899999996433 1 234566
Q ss_pred HhhccEEEEEeccchh----------hHHhcCCc-EEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEE
Q 007334 403 LMRAHVVALVLDAEEV----------RAVEEGRG-LVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVF 471 (607)
Q Consensus 403 i~~ad~~llViD~~~~----------~~~~~~~p-~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 471 (607)
+..+|++++|+|++++ .....++| +|+|+||+|+.+... ++.+.+.+...+... .....|+++
T Consensus 72 ~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~----~~~v~~ei~~~l~~~--~~~~~~ii~ 145 (614)
T PRK10512 72 VGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEAR----IAEVRRQVKAVLREY--GFAEAKLFV 145 (614)
T ss_pred hhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHH----HHHHHHHHHHHHHhc--CCCCCcEEE
Confidence 7789999999999875 12234666 579999999975421 222222222222111 112478999
Q ss_pred cccCCCCCHHHHHHHHHHH
Q 007334 472 TSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 472 iSA~~g~gv~~l~~~i~~~ 490 (607)
+||++|.|+++|++.|...
T Consensus 146 VSA~tG~gI~~L~~~L~~~ 164 (614)
T PRK10512 146 TAATEGRGIDALREHLLQL 164 (614)
T ss_pred EeCCCCCCCHHHHHHHHHh
Confidence 9999999999999888754
No 415
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.65 E-value=2.4e-15 Score=154.52 Aligned_cols=161 Identities=22% Similarity=0.266 Sum_probs=109.2
Q ss_pred EEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee------------------------CCeeEEEecCC
Q 007334 123 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL------------------------GDLRFKVLDSA 178 (607)
Q Consensus 123 V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~------------------------~~~~~~liDTp 178 (607)
|+|||.||||||||||+|++... .+.+.|+ +|.+...+.... ...++.+||||
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~-~~~~~pf--tT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~a 77 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADV-EIANYPF--TTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVA 77 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCC-cccCCCC--ccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECC
Confidence 58999999999999999998764 5778887 888887765543 23579999999
Q ss_pred CCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCC------------CC-HhHH-----HHHHH-------------
Q 007334 179 GLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSG------------LH-PLDL-----EVGKW------------- 227 (607)
Q Consensus 179 G~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~------------~~-~~~~-----~~~~~------------- 227 (607)
|+......+. ......+..+++||+++||+|++.. .. ..+. ++..|
T Consensus 78 Glv~ga~~~~---glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~ 154 (318)
T cd01899 78 GLVPGAHEGK---GLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIV 154 (318)
T ss_pred CCCCCccchh---hHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9974432211 2334557789999999999999741 01 1111 11111
Q ss_pred -------------------------------HHh----------------------hCCCCcEEEEecCCCcccCCcCcH
Q 007334 228 -------------------------------LRK----------------------HAPQIKPIVAMNKCESLHNGTGSL 254 (607)
Q Consensus 228 -------------------------------l~~----------------------~~~~~p~ilV~NK~D~~~~~~~~~ 254 (607)
|++ ....+|+|+|+||+|+..... .
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~--~ 232 (318)
T cd01899 155 RKADAEKTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAEN--N 232 (318)
T ss_pred HHHhcCCccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHH--H
Confidence 100 012479999999999754211 1
Q ss_pred HHHHHHHHhcCCCCcEEeecCCCCChHHHHH-HhccchHH
Q 007334 255 AGAAAESLMLGFGDPIAISAETGLGMTELYE-ALRPSVED 293 (607)
Q Consensus 255 ~~~~~~~~~~~~~~~i~iSA~~g~gi~eL~~-~i~~~l~~ 293 (607)
... ........+++++||+.+.|+++|.+ .+.+.+++
T Consensus 233 ~~~--l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe 270 (318)
T cd01899 233 ISK--LRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPG 270 (318)
T ss_pred HHH--HHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCC
Confidence 111 11223345789999999999999998 58887764
No 416
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.65 E-value=2.8e-15 Score=133.20 Aligned_cols=157 Identities=17% Similarity=0.125 Sum_probs=115.9
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
..+|.|+|..|+||||++++|.+.....++ -|.-.....+.+.+.++++||.+|+- ...+.+..
T Consensus 16 E~riLiLGLdNsGKTti~~kl~~~~~~~i~------pt~gf~Iktl~~~~~~L~iwDvGGq~----------~lr~~W~n 79 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLLGEDTDTIS------PTLGFQIKTLEYKGYTLNIWDVGGQK----------TLRSYWKN 79 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhcCCCccccC------CccceeeEEEEecceEEEEEEcCCcc----------hhHHHHHH
Confidence 468999999999999999999998643332 35556777788899999999999998 56778889
Q ss_pred HhhccCEEEEEEecCCCCCHhH--HHHHHHHHhh-CCCCcEEEEecCCCcccCCcC---cHHHHHHHH-HhcCCCCcEEe
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLD--LEVGKWLRKH-APQIKPIVAMNKCESLHNGTG---SLAGAAAES-LMLGFGDPIAI 272 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~--~~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~---~~~~~~~~~-~~~~~~~~i~i 272 (607)
|++.+|++|+|+|.++....++ .++.+.|.+. ..+.|++++.||.|+...-.. .......+. .... .+.+-|
T Consensus 80 YfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~-~~l~~c 158 (185)
T KOG0073|consen 80 YFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHH-WRLVKC 158 (185)
T ss_pred hhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccC-ceEEEE
Confidence 9999999999999998766665 2233344322 336899999999999843211 111111122 2222 267999
Q ss_pred ecCCCCChHHHHHHhccchHH
Q 007334 273 SAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 273 SA~~g~gi~eL~~~i~~~l~~ 293 (607)
||.+|+++.+-+++++..+..
T Consensus 159 s~~tge~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 159 SAVTGEDLLEGIDWLCDDLMS 179 (185)
T ss_pred eccccccHHHHHHHHHHHHHH
Confidence 999999999999998876644
No 417
>PLN03127 Elongation factor Tu; Provisional
Probab=99.65 E-value=3.5e-15 Score=160.70 Aligned_cols=143 Identities=24% Similarity=0.298 Sum_probs=97.0
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcC------Ccee---------ecCCCCceeeeEEEEEEEcCeEEEEEecCCCccccc
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQE------DRVL---------VGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREK 387 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~------~~~~---------~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~ 387 (607)
..++|+++|++|+|||||+++|++. .... .....|+|++.....++.++.++.++||||+.++
T Consensus 60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f-- 137 (447)
T PLN03127 60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY-- 137 (447)
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch--
Confidence 4588999999999999999999732 2111 2234799999988888888889999999997543
Q ss_pred ccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCc-EEEEEeCccCCCCcCchHHHHHHHHhcHHH
Q 007334 388 EKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRG-LVVIVNKMDLLSGRQNSALYKRVKEAVPQE 456 (607)
Q Consensus 388 ~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p-~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 456 (607)
...+...+..+|++++|+|+.++ .....++| +|+++||||+.+.. +.++.+...+.+.
T Consensus 138 --------~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~---~~~~~i~~~i~~~ 206 (447)
T PLN03127 138 --------VKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDE---ELLELVEMELREL 206 (447)
T ss_pred --------HHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHH---HHHHHHHHHHHHH
Confidence 12333455679999999999865 23346889 57899999998532 2223232222222
Q ss_pred HHhhCCC-CCCCCEEEcccC---CCCC
Q 007334 457 IQTVIPQ-VTGIPVVFTSAL---EGRG 479 (607)
Q Consensus 457 ~~~~~~~-~~~~~~v~iSA~---~g~g 479 (607)
+. .+.. ...+|++++||. +|.|
T Consensus 207 l~-~~~~~~~~vpiip~Sa~sa~~g~n 232 (447)
T PLN03127 207 LS-FYKFPGDEIPIIRGSALSALQGTN 232 (447)
T ss_pred HH-HhCCCCCcceEEEeccceeecCCC
Confidence 21 1111 235789999886 4555
No 418
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.64 E-value=1.4e-15 Score=171.89 Aligned_cols=152 Identities=20% Similarity=0.232 Sum_probs=109.1
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeecc----------CCC--------------------CceeeeeEEEEeeeCC
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYN----------TPD--------------------DHVTRDIREGLAKLGD 169 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~----------~~~--------------------~~~T~~~~~~~~~~~~ 169 (607)
..+|+|+|++|+|||||+|+|+.....++.. ..| .++|.+..+..+.+++
T Consensus 24 ~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~~ 103 (632)
T PRK05506 24 LLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATPK 103 (632)
T ss_pred eeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccCC
Confidence 4579999999999999999999755433311 111 2267777777888888
Q ss_pred eeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccC
Q 007334 170 LRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHN 249 (607)
Q Consensus 170 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~ 249 (607)
.++.+|||||+. ++.......+..+|++++|+|+..+...++.+...++.... ..++|+|+||+|+...
T Consensus 104 ~~~~liDtPG~~----------~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~-~~~iivvvNK~D~~~~ 172 (632)
T PRK05506 104 RKFIVADTPGHE----------QYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLG-IRHVVLAVNKMDLVDY 172 (632)
T ss_pred ceEEEEECCChH----------HHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhC-CCeEEEEEEecccccc
Confidence 999999999986 34444555788999999999999998877766666666552 3578899999999752
Q ss_pred CcCcHHHHHHH----HHhcCCC--CcEEeecCCCCChHH
Q 007334 250 GTGSLAGAAAE----SLMLGFG--DPIAISAETGLGMTE 282 (607)
Q Consensus 250 ~~~~~~~~~~~----~~~~~~~--~~i~iSA~~g~gi~e 282 (607)
..........+ ....++. +++++||++|.|+++
T Consensus 173 ~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 173 DQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred hhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 22111212112 2345553 489999999999984
No 419
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.64 E-value=1.9e-15 Score=146.06 Aligned_cols=164 Identities=16% Similarity=0.208 Sum_probs=105.5
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecC-CCCceeeeEEEEEEEcCeEEEEEecCCCcccccc-cCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGP-EAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKE-KGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~-~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~-~~~~~~~~~~~~~~ 402 (607)
++|+++|+||||||||+|+|+|...+.+.. .+++|.++......+++.++.++||||+.+.... .............+
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 379999999999999999999987665443 5678999888888889999999999999776321 11111112222233
Q ss_pred HhhccEEEEEeccchh--------hHHh------cCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV--------RAVE------EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 403 i~~ad~~llViD~~~~--------~~~~------~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
..++|++|+|+|+... ..+. ...++|+|+|++|........+..... ...+......+.+ .
T Consensus 81 ~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~----~~~l~~l~~~c~~-r 155 (196)
T cd01852 81 APGPHAFLLVVPLGRFTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENS----CEALKRLLEKCGG-R 155 (196)
T ss_pred CCCCEEEEEEEECCCcCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhc----cHHHHHHHHHhCC-e
Confidence 4578999999998764 1111 126899999999987654322222211 1222222222222 2
Q ss_pred EEEc-----ccCCCCCHHHHHHHHHHHHHH
Q 007334 469 VVFT-----SALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 469 ~v~i-----SA~~g~gv~~l~~~i~~~~~~ 493 (607)
++.. |+..+.++.+|++.|.+...+
T Consensus 156 ~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 156 YVAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred EEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 2222 356778888888777776554
No 420
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.64 E-value=2.6e-15 Score=160.35 Aligned_cols=143 Identities=21% Similarity=0.238 Sum_probs=96.6
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcC------Cce---------eecCCCCceeeeEEEEEEEcCeEEEEEecCCCccccc
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQE------DRV---------LVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREK 387 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~------~~~---------~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~ 387 (607)
+.++|+++|++++|||||+++|++. ... ......|+|++.....++.++.++.||||||+.++.
T Consensus 11 ~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~- 89 (394)
T TIGR00485 11 PHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV- 89 (394)
T ss_pred ceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHH-
Confidence 4588999999999999999999842 111 112247999998877777778899999999975431
Q ss_pred ccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEE-EEEeCccCCCCcCchHHHHHHHHhcHHH
Q 007334 388 EKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLV-VIVNKMDLLSGRQNSALYKRVKEAVPQE 456 (607)
Q Consensus 388 ~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~i-vv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 456 (607)
..+...+..+|++++|+|++++ .....++|.+ +|+||||+.+.. +.++.+.+.+...
T Consensus 90 ---------~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~---~~~~~~~~~i~~~ 157 (394)
T TIGR00485 90 ---------KNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDE---ELLELVEMEVREL 157 (394)
T ss_pred ---------HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHH---HHHHHHHHHHHHH
Confidence 2234556689999999999874 2334578865 689999997542 2222222222222
Q ss_pred HHhhCCCCCCCCEEEcccCCCC
Q 007334 457 IQTVIPQVTGIPVVFTSALEGR 478 (607)
Q Consensus 457 ~~~~~~~~~~~~~v~iSA~~g~ 478 (607)
+...-.....+|++++||++|.
T Consensus 158 l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 158 LSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred HHhcCCCccCccEEECcccccc
Confidence 2211111123799999999985
No 421
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.64 E-value=2.5e-15 Score=154.49 Aligned_cols=86 Identities=30% Similarity=0.297 Sum_probs=66.5
Q ss_pred EEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEE------------------------cCeEEEEEecCCC
Q 007334 327 LAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEY------------------------QGRTVYLVDTAGW 382 (607)
Q Consensus 327 v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~------------------------~~~~~~liDTpG~ 382 (607)
|+++|.||||||||+|+|++.. +.++++|++|+++..+...+ .+.++.+|||||+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~-~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGl 79 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLAD-VEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL 79 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCC-CcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCC
Confidence 5899999999999999999764 68899999999988765543 2247899999998
Q ss_pred cccccccCcchhHHHHHHHHHhhccEEEEEeccc
Q 007334 383 LQREKEKGPASLSVMQSRKNLMRAHVVALVLDAE 416 (607)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~ 416 (607)
..... .+ ..+ ..+.+.+++.||++++|+|++
T Consensus 80 v~ga~-~~-~gl-g~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 80 VPGAH-EG-KGL-GNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCCcc-ch-hhH-HHHHHHHHHHCCEEEEEEeCC
Confidence 65421 11 111 234567899999999999997
No 422
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.64 E-value=1.8e-15 Score=161.89 Aligned_cols=151 Identities=19% Similarity=0.249 Sum_probs=108.2
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeec--------------------------cC----CCCceeeeeEEEEeeeCCee
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVY--------------------------NT----PDDHVTRDIREGLAKLGDLR 171 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~--------------------------~~----~~~~~T~~~~~~~~~~~~~~ 171 (607)
+|+++|++++|||||+++|+.....+.. +. .....|.+.....+.+.+.+
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~ 81 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKRK 81 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCeE
Confidence 6999999999999999999743221111 00 00236788888888888999
Q ss_pred EEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCc
Q 007334 172 FKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGT 251 (607)
Q Consensus 172 ~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~ 251 (607)
+.+|||||+. ++...+...+..+|++++|+|+..+...++.+....+.... ..++|+|+||+|+.....
T Consensus 82 ~~liDtPGh~----------~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~-~~~iivviNK~D~~~~~~ 150 (406)
T TIGR02034 82 FIVADTPGHE----------QYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLG-IRHVVLAVNKMDLVDYDE 150 (406)
T ss_pred EEEEeCCCHH----------HHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcC-CCcEEEEEEecccccchH
Confidence 9999999987 55555667789999999999999998888777666666552 246889999999975322
Q ss_pred CcHHHHHHH----HHhcCCC--CcEEeecCCCCChHHH
Q 007334 252 GSLAGAAAE----SLMLGFG--DPIAISAETGLGMTEL 283 (607)
Q Consensus 252 ~~~~~~~~~----~~~~~~~--~~i~iSA~~g~gi~eL 283 (607)
......... ....++. +++++||.+|+|++++
T Consensus 151 ~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~ 188 (406)
T TIGR02034 151 EVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVSR 188 (406)
T ss_pred HHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCccc
Confidence 111111111 2334443 5799999999999864
No 423
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.64 E-value=2.1e-15 Score=163.05 Aligned_cols=151 Identities=25% Similarity=0.284 Sum_probs=103.0
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCcee------------------------------ecCCCCceeeeEEEEEEEcCe
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVL------------------------------VGPEAGLTRDSVRVHFEYQGR 372 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~------------------------------~~~~~gtT~~~~~~~~~~~~~ 372 (607)
..++|+++|++++|||||+++|+...... .....|+|.|.....+.+++.
T Consensus 6 ~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~ 85 (426)
T TIGR00483 6 EHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDKY 85 (426)
T ss_pred ceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCCe
Confidence 35789999999999999999998532111 112458999999888999999
Q ss_pred EEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh---------h----HHhcC-CcEEEEEeCccCCC
Q 007334 373 TVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV---------R----AVEEG-RGLVVIVNKMDLLS 438 (607)
Q Consensus 373 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~---------~----~~~~~-~p~ivv~NK~Dl~~ 438 (607)
.+.||||||+.++. ..+..++..+|++++|+|++++ . ....+ .|+|+|+||+|+.+
T Consensus 86 ~i~iiDtpGh~~f~----------~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~ 155 (426)
T TIGR00483 86 EVTIVDCPGHRDFI----------KNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVN 155 (426)
T ss_pred EEEEEECCCHHHHH----------HHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccC
Confidence 99999999964331 2234456789999999999875 0 11123 57899999999975
Q ss_pred CcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHHHH
Q 007334 439 GRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMH 485 (607)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~ 485 (607)
.. .+.++...+.+...+...-......+++++||++|.|+.+++.
T Consensus 156 ~~--~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~ 200 (426)
T TIGR00483 156 YD--EEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSE 200 (426)
T ss_pred cc--HHHHHHHHHHHHHHHHHcCCCcccceEEEeecccccccccccc
Confidence 32 1223333333322222111111247899999999999987553
No 424
>PRK00049 elongation factor Tu; Reviewed
Probab=99.64 E-value=2.9e-15 Score=159.88 Aligned_cols=144 Identities=22% Similarity=0.239 Sum_probs=99.4
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCC------ce---------eecCCCCceeeeEEEEEEEcCeEEEEEecCCCccccc
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQED------RV---------LVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREK 387 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~------~~---------~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~ 387 (607)
..++|+++|++++|||||+++|++.. .. ......|+|++.....+..++.++.++||||+.++
T Consensus 11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f-- 88 (396)
T PRK00049 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY-- 88 (396)
T ss_pred CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH--
Confidence 35889999999999999999999631 11 11125799999887777778889999999997432
Q ss_pred ccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEE-EEEeCccCCCCcCchHHHHHHHHhcHHH
Q 007334 388 EKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLV-VIVNKMDLLSGRQNSALYKRVKEAVPQE 456 (607)
Q Consensus 388 ~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~i-vv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 456 (607)
...+...+..+|++++|+|+.++ .....++|.+ +++||+|+.+.. +.++.+...+...
T Consensus 89 --------~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~---~~~~~~~~~i~~~ 157 (396)
T PRK00049 89 --------VKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDE---ELLELVEMEVREL 157 (396)
T ss_pred --------HHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchH---HHHHHHHHHHHHH
Confidence 12334567789999999999875 2334688976 589999997531 2233333333322
Q ss_pred HHhhCCCCCCCCEEEcccCCCCC
Q 007334 457 IQTVIPQVTGIPVVFTSALEGRG 479 (607)
Q Consensus 457 ~~~~~~~~~~~~~v~iSA~~g~g 479 (607)
+...-.....+|++++||++|.+
T Consensus 158 l~~~~~~~~~~~iv~iSa~~g~~ 180 (396)
T PRK00049 158 LSKYDFPGDDTPIIRGSALKALE 180 (396)
T ss_pred HHhcCCCccCCcEEEeecccccC
Confidence 22211112358999999999864
No 425
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.63 E-value=4.1e-16 Score=137.96 Aligned_cols=147 Identities=22% Similarity=0.235 Sum_probs=109.3
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEE-cC--eEEEEEecCCCcccccccCcchhHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEY-QG--RTVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~-~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
.+++.++|++-||||+|+..++....+.. .-|.+.+|.....++. +| .+++||||||+.+++ .-+.
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfael-sdptvgvdffarlie~~pg~riklqlwdtagqerfr----------sitk 76 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFAEL-SDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFR----------SITK 76 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCccccc-CCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHH----------HHHH
Confidence 47899999999999999999996654433 3455566655544444 23 367899999976553 3466
Q ss_pred HHHhhccEEEEEeccchhhH--------------Hh-cCC-cEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCC
Q 007334 401 KNLMRAHVVALVLDAEEVRA--------------VE-EGR-GLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQV 464 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~~--------------~~-~~~-p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (607)
.|++++-++++|+|.++... .. ..+ -+.+|+.|+||... +++..+.++.++..
T Consensus 77 syyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~Sq-----------RqVt~EEaEklAa~ 145 (213)
T KOG0091|consen 77 SYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQ-----------RQVTAEEAEKLAAS 145 (213)
T ss_pred HHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhh-----------ccccHHHHHHHHHh
Confidence 88999999999999998611 11 223 35789999999865 34455566666667
Q ss_pred CCCCEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 465 TGIPVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 465 ~~~~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
.+..++++||++|.||++.|.-+.+.+.
T Consensus 146 hgM~FVETSak~g~NVeEAF~mlaqeIf 173 (213)
T KOG0091|consen 146 HGMAFVETSAKNGCNVEEAFDMLAQEIF 173 (213)
T ss_pred cCceEEEecccCCCcHHHHHHHHHHHHH
Confidence 7899999999999999999998877654
No 426
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.63 E-value=1.9e-15 Score=155.98 Aligned_cols=156 Identities=22% Similarity=0.305 Sum_probs=117.4
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCccccccc-CcchhHHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEK-GPASLSVMQSRKNL 403 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~-~~~~~~~~~~~~~i 403 (607)
..+.+||.||||||||+|.++.. ...+.++++||...+.+++++.-..++++||||+.+...+. ...++....++.++
T Consensus 169 rTlllcG~PNVGKSSf~~~vtra-dvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAHL 247 (620)
T KOG1490|consen 169 RTLLVCGYPNVGKSSFNNKVTRA-DDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHL 247 (620)
T ss_pred CeEEEecCCCCCcHhhccccccc-ccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHHh
Confidence 57899999999999999999865 47889999999999999999999999999999998873222 12223333445555
Q ss_pred hhccEEEEEeccchh---------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 404 MRAHVVALVLDAEEV---------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 404 ~~ad~~llViD~~~~---------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
+. +||+++|.++- ...-.++|+|+|+||+|+...++..+.-+++.+.+ ....+++
T Consensus 248 ra--aVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~--------~~~~~v~ 317 (620)
T KOG1490|consen 248 RS--AVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTI--------IDDGNVK 317 (620)
T ss_pred hh--hheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccccCHHHHHHHHHH--------HhccCce
Confidence 43 58888898874 22346899999999999998766554433333222 2223589
Q ss_pred EEEcccCCCCCHHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
++.+|..+.+|+.++-....+.+
T Consensus 318 v~~tS~~~eegVm~Vrt~ACe~L 340 (620)
T KOG1490|consen 318 VVQTSCVQEEGVMDVRTTACEAL 340 (620)
T ss_pred EEEecccchhceeeHHHHHHHHH
Confidence 99999999999999877665543
No 427
>PRK12735 elongation factor Tu; Reviewed
Probab=99.63 E-value=3.1e-15 Score=159.73 Aligned_cols=158 Identities=20% Similarity=0.164 Sum_probs=112.1
Q ss_pred CCEEEEecCCCCchhHHHHHhhcc------cee----e-----eccCCCCceeeeeEEEEeeeCCeeEEEecCCCCcccc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRR------REA----L-----VYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEA 184 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~------~~~----~-----v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~ 184 (607)
..+|+++|++|+|||||+++|++. ... . .....| +|.+.....+..++.++.++||||+.
T Consensus 12 ~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG--iT~~~~~~~~~~~~~~i~~iDtPGh~--- 86 (396)
T PRK12735 12 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARG--ITINTSHVEYETANRHYAHVDCPGHA--- 86 (396)
T ss_pred eEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcC--ceEEEeeeEEcCCCcEEEEEECCCHH---
Confidence 468999999999999999999962 110 0 011334 78887766666677889999999986
Q ss_pred CchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEE-EEecCCCcccCCcCc--H-HHHHHH
Q 007334 185 TSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPI-VAMNKCESLHNGTGS--L-AGAAAE 260 (607)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~i-lV~NK~D~~~~~~~~--~-~~~~~~ 260 (607)
++...+...+..+|++++|+|+..+...++.+.+..+... ++|.+ +|+||+|+....... . .+....
T Consensus 87 -------~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~--gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~ 157 (396)
T PRK12735 87 -------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV--GVPYIVVFLNKCDMVDDEELLELVEMEVREL 157 (396)
T ss_pred -------HHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHc--CCCeEEEEEEecCCcchHHHHHHHHHHHHHH
Confidence 5666667788899999999999998877777776766655 67865 579999997532110 1 112222
Q ss_pred HHhcCC----CCcEEeecCCCC----------ChHHHHHHhccch
Q 007334 261 SLMLGF----GDPIAISAETGL----------GMTELYEALRPSV 291 (607)
Q Consensus 261 ~~~~~~----~~~i~iSA~~g~----------gi~eL~~~i~~~l 291 (607)
+...++ .+++++||.+|. ++.+|++.|...+
T Consensus 158 l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 158 LSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred HHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 333343 257999999995 5677777776554
No 428
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.63 E-value=2.8e-15 Score=166.35 Aligned_cols=152 Identities=25% Similarity=0.388 Sum_probs=106.2
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCcee---------------ecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccC
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVL---------------VGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKG 390 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~---------------~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~ 390 (607)
.|+++|+.++|||||+++|+.....+ .....|+|.......+.|++.++.||||||+.++.
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~---- 78 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFG---- 78 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHH----
Confidence 69999999999999999998532111 11234788888888899999999999999975542
Q ss_pred cchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhh
Q 007334 391 PASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTV 460 (607)
Q Consensus 391 ~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 460 (607)
.....+++.+|++++|+|++++ .....++|+|+|+||+|+..... .+..+.+.+.+.. +..
T Consensus 79 ------~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~~-~~v~~ei~~l~~~-~g~- 149 (594)
T TIGR01394 79 ------GEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARP-DEVVDEVFDLFAE-LGA- 149 (594)
T ss_pred ------HHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcCH-HHHHHHHHHHHHh-hcc-
Confidence 2345678899999999999875 33456899999999999865421 1222222221110 000
Q ss_pred CCCCCCCCEEEcccCCCC----------CHHHHHHHHHHH
Q 007334 461 IPQVTGIPVVFTSALEGR----------GRIAVMHQVIDT 490 (607)
Q Consensus 461 ~~~~~~~~~v~iSA~~g~----------gv~~l~~~i~~~ 490 (607)
......+|++++||++|. |+..+|+.+.+.
T Consensus 150 ~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~ 189 (594)
T TIGR01394 150 DDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRH 189 (594)
T ss_pred ccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHh
Confidence 011235799999999996 677777766654
No 429
>PRK10218 GTP-binding protein; Provisional
Probab=99.63 E-value=5e-15 Score=164.14 Aligned_cols=142 Identities=25% Similarity=0.362 Sum_probs=101.1
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCcee---------------ecCCCCceeeeEEEEEEEcCeEEEEEecCCCccccccc
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVL---------------VGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEK 389 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~---------------~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~ 389 (607)
.+|+++|+.++|||||+++|+.....+ .....|+|.+.....+.+++..+.||||||+.++.
T Consensus 6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~--- 82 (607)
T PRK10218 6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFG--- 82 (607)
T ss_pred eEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhH---
Confidence 579999999999999999999632221 12346888888888889999999999999976552
Q ss_pred CcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHh
Q 007334 390 GPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQT 459 (607)
Q Consensus 390 ~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 459 (607)
..+..+++.+|++|+|+|++++ .....++|.++++||+|+..... ....+.+.+.+.. +.
T Consensus 83 -------~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~-~~vl~ei~~l~~~-l~- 152 (607)
T PRK10218 83 -------GEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARP-DWVVDQVFDLFVN-LD- 152 (607)
T ss_pred -------HHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCch-hHHHHHHHHHHhc-cC-
Confidence 2345678899999999999875 33457899999999999875422 1222222221110 00
Q ss_pred hCCCCCCCCEEEcccCCCCC
Q 007334 460 VIPQVTGIPVVFTSALEGRG 479 (607)
Q Consensus 460 ~~~~~~~~~~v~iSA~~g~g 479 (607)
.......+|++++||++|.|
T Consensus 153 ~~~~~~~~PVi~~SA~~G~~ 172 (607)
T PRK10218 153 ATDEQLDFPIVYASALNGIA 172 (607)
T ss_pred ccccccCCCEEEeEhhcCcc
Confidence 01112357999999999985
No 430
>PLN03126 Elongation factor Tu; Provisional
Probab=99.63 E-value=4.6e-15 Score=160.61 Aligned_cols=145 Identities=22% Similarity=0.223 Sum_probs=102.7
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCce---------------eecCCCCceeeeEEEEEEEcCeEEEEEecCCCccccc
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRV---------------LVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREK 387 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~---------------~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~ 387 (607)
..++|+++|++++|||||+++|++.... ......|+|.+.....+++++..+.||||||+.++.
T Consensus 80 ~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~- 158 (478)
T PLN03126 80 PHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV- 158 (478)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHH-
Confidence 3578999999999999999999953111 123446889998888888889999999999975431
Q ss_pred ccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCc-EEEEEeCccCCCCcCchHHHHHHHHhcHHH
Q 007334 388 EKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRG-LVVIVNKMDLLSGRQNSALYKRVKEAVPQE 456 (607)
Q Consensus 388 ~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p-~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 456 (607)
..+...+..+|++++|+|+.++ .....++| +|+++||+|+.+.+ +.++.+.+++...
T Consensus 159 ---------~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~---~~~~~i~~~i~~~ 226 (478)
T PLN03126 159 ---------KNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDE---ELLELVELEVREL 226 (478)
T ss_pred ---------HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHH---HHHHHHHHHHHHH
Confidence 2345666789999999999876 23346888 78899999997632 2233333333333
Q ss_pred HHhhCCCCCCCCEEEcccCCCCCH
Q 007334 457 IQTVIPQVTGIPVVFTSALEGRGR 480 (607)
Q Consensus 457 ~~~~~~~~~~~~~v~iSA~~g~gv 480 (607)
+...-.....+|++++||.+|.++
T Consensus 227 l~~~g~~~~~~~~vp~Sa~~g~n~ 250 (478)
T PLN03126 227 LSSYEFPGDDIPIISGSALLALEA 250 (478)
T ss_pred HHhcCCCcCcceEEEEEccccccc
Confidence 322111124689999999999765
No 431
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.63 E-value=3.4e-15 Score=161.36 Aligned_cols=152 Identities=20% Similarity=0.192 Sum_probs=105.8
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeee------------------------c------cCCCCceeeeeEEEEeeeCC
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALV------------------------Y------NTPDDHVTRDIREGLAKLGD 169 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v------------------------~------~~~~~~~T~~~~~~~~~~~~ 169 (607)
..+|+++|++++|||||+++|+.....+. . ...+ +|.|.....+.+++
T Consensus 7 ~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg--~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 7 HINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERG--VTIDVAHWKFETDK 84 (426)
T ss_pred eeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcC--ceEEEEEEEEccCC
Confidence 46899999999999999999985321111 0 1223 88999888888899
Q ss_pred eeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCC---CHhHHHHHHHHHhhCCCCcEEEEecCCCc
Q 007334 170 LRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGL---HPLDLEVGKWLRKHAPQIKPIVAMNKCES 246 (607)
Q Consensus 170 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~---~~~~~~~~~~l~~~~~~~p~ilV~NK~D~ 246 (607)
..+.+|||||+. ++.......+..+|++++|+|++++. ..+..+...+++.. ...|+|+|+||+|+
T Consensus 85 ~~i~iiDtpGh~----------~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~-~~~~iIVviNK~Dl 153 (426)
T TIGR00483 85 YEVTIVDCPGHR----------DFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL-GINQLIVAINKMDS 153 (426)
T ss_pred eEEEEEECCCHH----------HHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc-CCCeEEEEEEChhc
Confidence 999999999987 45555666788999999999999883 33333333333333 23578999999999
Q ss_pred ccCCcCcH----HHHHHHHHhcCC----CCcEEeecCCCCChHHHH
Q 007334 247 LHNGTGSL----AGAAAESLMLGF----GDPIAISAETGLGMTELY 284 (607)
Q Consensus 247 ~~~~~~~~----~~~~~~~~~~~~----~~~i~iSA~~g~gi~eL~ 284 (607)
........ .+....+...++ .+++++||++|.|++++.
T Consensus 154 ~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 154 VNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred cCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 74222111 122223334443 257999999999998744
No 432
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.63 E-value=4.6e-15 Score=142.31 Aligned_cols=159 Identities=18% Similarity=0.177 Sum_probs=124.2
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+++|.+|||||+|..++++..+ +.+... +..|.+...+.+++ ..+.|+||+|+. ++..+.
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f--~~~y~p--tied~y~k~~~v~~~~~~l~ilDt~g~~----------~~~~~~ 68 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRF--VEDYDP--TIEDSYRKELTVDGEVCMLEILDTAGQE----------EFSAMR 68 (196)
T ss_pred ceEEEEECCCCCCcchheeeeccccc--ccccCC--CccccceEEEEECCEEEEEEEEcCCCcc----------cChHHH
Confidence 35899999999999999999998876 333333 55566666666654 467899999976 455556
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHHH-HHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeec
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISA 274 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA 274 (607)
..++..+|+.++|+++++..++++.. +.+.+.+. ....|+++|+||+|+...+.+..++....+...+. .++++||
T Consensus 69 ~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~-~f~E~Sa 147 (196)
T KOG0395|consen 69 DLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGC-AFIETSA 147 (196)
T ss_pred HHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCC-cEEEeec
Confidence 67889999999999999988888743 44444222 33579999999999998777777777777777777 4899999
Q ss_pred CCCCChHHHHHHhccchHH
Q 007334 275 ETGLGMTELYEALRPSVED 293 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~~l~~ 293 (607)
+...+++++|..|...+..
T Consensus 148 k~~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 148 KLNYNVDEVFYELVREIRL 166 (196)
T ss_pred cCCcCHHHHHHHHHHHHHh
Confidence 9999999999999876643
No 433
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.62 E-value=2.9e-15 Score=162.83 Aligned_cols=154 Identities=19% Similarity=0.179 Sum_probs=107.4
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccC----------CC--------------------CceeeeeEEEEeeeCC
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNT----------PD--------------------DHVTRDIREGLAKLGD 169 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~----------~~--------------------~~~T~~~~~~~~~~~~ 169 (607)
..+|+++|++|+|||||+++|+.....+.... .| ...|.+..+..+.+++
T Consensus 27 ~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~~ 106 (474)
T PRK05124 27 LLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEK 106 (474)
T ss_pred ceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEeccCC
Confidence 57899999999999999999985533222100 11 1256777777777888
Q ss_pred eeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccC
Q 007334 170 LRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHN 249 (607)
Q Consensus 170 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~ 249 (607)
.++.+|||||+. ++...+...+..+|++++|+|+..+...++.+....+.... ..|+|+|+||+|+...
T Consensus 107 ~~i~~iDTPGh~----------~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg-~~~iIvvvNKiD~~~~ 175 (474)
T PRK05124 107 RKFIIADTPGHE----------QYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLG-IKHLVVAVNKMDLVDY 175 (474)
T ss_pred cEEEEEECCCcH----------HHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhC-CCceEEEEEeeccccc
Confidence 899999999976 45445555679999999999999988776655545554442 2478999999999753
Q ss_pred CcCcHHHHHHHH----HhcC---CCCcEEeecCCCCChHHHH
Q 007334 250 GTGSLAGAAAES----LMLG---FGDPIAISAETGLGMTELY 284 (607)
Q Consensus 250 ~~~~~~~~~~~~----~~~~---~~~~i~iSA~~g~gi~eL~ 284 (607)
...........+ ...+ ..+++++||++|.|++++.
T Consensus 176 ~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 176 SEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence 221122222222 2233 2367999999999998754
No 434
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.62 E-value=9.1e-15 Score=136.45 Aligned_cols=155 Identities=23% Similarity=0.259 Sum_probs=97.3
Q ss_pred eEEEEcCCCCchhHHHHHhhcC-CceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCccccccc-CcchhHH--HHHHH
Q 007334 326 QLAIVGRPNVGKSTLLNALLQE-DRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEK-GPASLSV--MQSRK 401 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~-~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~-~~~~~~~--~~~~~ 401 (607)
.|+++|.+|+|||||+|.|++. .....++.+++|.+.... ..+ ..+.+|||||+....... ..+.+.. .....
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~--~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFF--NVN-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEE--Ecc-CeEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 3899999999999999999943 334566777777664332 223 388999999975431110 1111111 11112
Q ss_pred HHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEE
Q 007334 402 NLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVF 471 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 471 (607)
.....+++++|+|.+.. .....+.|+++|+||+|+............+ ...+.. .....++++
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~----~~~l~~---~~~~~~~~~ 150 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEI----KKELKL---FEIDPPIIL 150 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHH----HHHHHh---ccCCCceEE
Confidence 22346789999998753 1223468999999999997543221111111 111111 234568999
Q ss_pred cccCCCCCHHHHHHHHHHH
Q 007334 472 TSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 472 iSA~~g~gv~~l~~~i~~~ 490 (607)
+||+++.|+.++++.+.+.
T Consensus 151 ~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 151 FSSLKGQGIDELRALIEKW 169 (170)
T ss_pred EecCCCCCHHHHHHHHHHh
Confidence 9999999999999888653
No 435
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.62 E-value=9e-15 Score=141.25 Aligned_cols=143 Identities=16% Similarity=0.138 Sum_probs=95.6
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee-------CCeeEEEecCCCCccccCchhHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL-------GDLRFKVLDSAGLETEATSGSILDRTA 194 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~-------~~~~~~liDTpG~~~~~~~~~~~~~~~ 194 (607)
+|+++|.++||||||++++++..+.. . +..++..+.....+.+ ....+.||||+|.+ ++.
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~--~-~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e----------~~~ 68 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLG--R-PSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSE----------SVK 68 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC--C-CCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCch----------hHH
Confidence 69999999999999999999876421 1 1111222333333333 23578999999998 566
Q ss_pred HHHHHHhhccCEEEEEEecCCCCCHhHHH-HHHHHHhh--------------------CCCCcEEEEecCCCcccCCcCc
Q 007334 195 GMTANVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKH--------------------APQIKPIVAMNKCESLHNGTGS 253 (607)
Q Consensus 195 ~~~~~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~--------------------~~~~p~ilV~NK~D~~~~~~~~ 253 (607)
.....++..+|++|+|+|++++.+.+... |...+... ..+.|+++|+||+|+...+...
T Consensus 69 ~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~ 148 (202)
T cd04102 69 STRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESS 148 (202)
T ss_pred HHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccc
Confidence 66778899999999999999987777632 33223221 1368999999999997654332
Q ss_pred HHH----HHHHHHhcCCCCcEEeecCCCC
Q 007334 254 LAG----AAAESLMLGFGDPIAISAETGL 278 (607)
Q Consensus 254 ~~~----~~~~~~~~~~~~~i~iSA~~g~ 278 (607)
... ....+.+++. +.+.+++.++.
T Consensus 149 ~~~~~~~~~~ia~~~~~-~~i~~~c~~~~ 176 (202)
T cd04102 149 GNLVLTARGFVAEQGNA-EEINLNCTNGR 176 (202)
T ss_pred hHHHhhHhhhHHHhcCC-ceEEEecCCcc
Confidence 221 1223445666 56777777654
No 436
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.62 E-value=3.3e-15 Score=150.77 Aligned_cols=133 Identities=19% Similarity=0.180 Sum_probs=94.2
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCce-----e------------ecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccc
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRV-----L------------VGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKE 388 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~-----~------------~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~ 388 (607)
.|+++|++|+|||||+++|+..... . .....|+|++.....+.|++.++.+|||||+.++.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~-- 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFT-- 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHH--
Confidence 3899999999999999999742211 1 11345889999889999999999999999975442
Q ss_pred cCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHH
Q 007334 389 KGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQ 458 (607)
Q Consensus 389 ~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 458 (607)
..+..+++.+|++|+|+|+.++ .....++|+++++||+|+.+.. . +.+. .++.
T Consensus 79 --------~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a~-~----~~~~----~~l~ 141 (270)
T cd01886 79 --------IEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGAD-F----FRVV----EQIR 141 (270)
T ss_pred --------HHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCC-H----HHHH----HHHH
Confidence 2356788899999999999875 2334689999999999987542 1 1111 2233
Q ss_pred hhCCCCCCCCEEEcccCCC
Q 007334 459 TVIPQVTGIPVVFTSALEG 477 (607)
Q Consensus 459 ~~~~~~~~~~~v~iSA~~g 477 (607)
+.+......-++|+||..+
T Consensus 142 ~~l~~~~~~~~~Pisa~~~ 160 (270)
T cd01886 142 EKLGANPVPLQLPIGEEDD 160 (270)
T ss_pred HHhCCCceEEEeccccCCC
Confidence 3333222334678888644
No 437
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=7.2e-15 Score=154.94 Aligned_cols=154 Identities=23% Similarity=0.307 Sum_probs=123.9
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC---CeeEEEecCCCCccccCchhHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG---DLRFKVLDSAGLETEATSGSILDRTAGM 196 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~ 196 (607)
.|.|+++|+-..|||||+..+-+.+.+ .....| .|.......+..+ ...+.++||||++ .|..+
T Consensus 5 ~PvVtimGHVDHGKTtLLD~IR~t~Va-~~EaGG--ITQhIGA~~v~~~~~~~~~itFiDTPGHe----------AFt~m 71 (509)
T COG0532 5 PPVVTIMGHVDHGKTTLLDKIRKTNVA-AGEAGG--ITQHIGAYQVPLDVIKIPGITFIDTPGHE----------AFTAM 71 (509)
T ss_pred CCEEEEeCcccCCccchhhhHhcCccc-cccCCc--eeeEeeeEEEEeccCCCceEEEEcCCcHH----------HHHHH
Confidence 589999999999999999999877653 222333 8999988888874 4689999999998 55555
Q ss_pred HHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCC--------C
Q 007334 197 TANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFG--------D 268 (607)
Q Consensus 197 ~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~--------~ 268 (607)
...-..-+|++++|+|+.++..++..+-.+.++.. +.|+++++||+|..+... .....+....|+. .
T Consensus 72 RaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a--~vP~iVAiNKiDk~~~np---~~v~~el~~~gl~~E~~gg~v~ 146 (509)
T COG0532 72 RARGASVTDIAILVVAADDGVMPQTIEAINHAKAA--GVPIVVAINKIDKPEANP---DKVKQELQEYGLVPEEWGGDVI 146 (509)
T ss_pred HhcCCccccEEEEEEEccCCcchhHHHHHHHHHHC--CCCEEEEEecccCCCCCH---HHHHHHHHHcCCCHhhcCCceE
Confidence 55666789999999999999999999888888887 899999999999986432 3333444444542 4
Q ss_pred cEEeecCCCCChHHHHHHhccch
Q 007334 269 PIAISAETGLGMTELYEALRPSV 291 (607)
Q Consensus 269 ~i~iSA~~g~gi~eL~~~i~~~l 291 (607)
++++||++|+|+++|++.|.-..
T Consensus 147 ~VpvSA~tg~Gi~eLL~~ill~a 169 (509)
T COG0532 147 FVPVSAKTGEGIDELLELILLLA 169 (509)
T ss_pred EEEeeccCCCCHHHHHHHHHHHH
Confidence 58999999999999999887543
No 438
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.62 E-value=3.3e-15 Score=160.06 Aligned_cols=159 Identities=15% Similarity=0.055 Sum_probs=103.8
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceee--eccCCCCceeeeeEEEEee--------------------------eCCee
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREAL--VYNTPDDHVTRDIREGLAK--------------------------LGDLR 171 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~--v~~~~~~~~T~~~~~~~~~--------------------------~~~~~ 171 (607)
..+|+++|++|+|||||+++|++..... .....+ .|.+..+.... ..+..
T Consensus 4 ~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg--~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 4 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRG--ISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred eEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcC--ceeEecccccccccccccCccccccccccccccccccccccE
Confidence 3589999999999999999998642100 000112 23322211110 02467
Q ss_pred EEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCC-CHhHHHHHHHHHhhCCCCcEEEEecCCCcccCC
Q 007334 172 FKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGL-HPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNG 250 (607)
Q Consensus 172 ~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~-~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~ 250 (607)
+.+|||||++ ++...+...+..+|++++|+|++++. ..+..+.+..+... ...|+++|+||+|+....
T Consensus 82 i~liDtPGh~----------~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~-gi~~iIVvvNK~Dl~~~~ 150 (406)
T TIGR03680 82 VSFVDAPGHE----------TLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII-GIKNIVIVQNKIDLVSKE 150 (406)
T ss_pred EEEEECCCHH----------HHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc-CCCeEEEEEEccccCCHH
Confidence 9999999987 56666777788999999999999876 55555555555443 235789999999997532
Q ss_pred cC--cHHHHHHHHHhc---CCCCcEEeecCCCCChHHHHHHhccchH
Q 007334 251 TG--SLAGAAAESLML---GFGDPIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 251 ~~--~~~~~~~~~~~~---~~~~~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
.. ..++....+... +. +++++||++|+|+++|++.|...++
T Consensus 151 ~~~~~~~~i~~~l~~~~~~~~-~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 151 KALENYEEIKEFVKGTVAENA-PIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHHHHHHHHHhhhhhcccCCC-eEEEEECCCCCChHHHHHHHHHhCC
Confidence 11 011111111111 22 6799999999999999999986553
No 439
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=2.4e-15 Score=129.66 Aligned_cols=145 Identities=21% Similarity=0.216 Sum_probs=104.8
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCC-ceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAG-LTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~g-tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
.+|..|+|.-|||||+|+..++... ...+.|. +.++.....+++.|. +++||||+|+.+++ ..++
T Consensus 11 ifkyiiigdmgvgkscllhqftekk--fmadcphtigvefgtriievsgqkiklqiwdtagqerfr----------avtr 78 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKK--FMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFR----------AVTR 78 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHH--HhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHH----------HHHH
Confidence 4788999999999999999998653 2334443 234444556666665 56799999965543 4567
Q ss_pred HHHhhccEEEEEeccchh--------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEV--------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~--------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
.++++|.++++|+|.+.. .....+..+++++||.||...++ +.-+..+.++...+
T Consensus 79 syyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrd-----------v~yeeak~faeeng 147 (215)
T KOG0097|consen 79 SYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRD-----------VTYEEAKEFAEENG 147 (215)
T ss_pred HHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhccc-----------CcHHHHHHHHhhcC
Confidence 889999999999999876 01123556889999999976532 22333444555678
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
.-++++||++|+|+++.|-+....+
T Consensus 148 l~fle~saktg~nvedafle~akki 172 (215)
T KOG0097|consen 148 LMFLEASAKTGQNVEDAFLETAKKI 172 (215)
T ss_pred eEEEEecccccCcHHHHHHHHHHHH
Confidence 8999999999999999886655443
No 440
>PLN03127 Elongation factor Tu; Provisional
Probab=99.62 E-value=7.7e-15 Score=158.08 Aligned_cols=158 Identities=17% Similarity=0.133 Sum_probs=111.6
Q ss_pred CCEEEEecCCCCchhHHHHHhhcc------ceeee---------ccCCCCceeeeeEEEEeeeCCeeEEEecCCCCcccc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRR------REALV---------YNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEA 184 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~------~~~~v---------~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~ 184 (607)
..+|+++|++|+|||||+++|++. ..... ....| +|.+.....++.++.++.++||||+.
T Consensus 61 ~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rG--iTi~~~~~~~~~~~~~i~~iDtPGh~--- 135 (447)
T PLN03127 61 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARG--ITIATAHVEYETAKRHYAHVDCPGHA--- 135 (447)
T ss_pred eEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcC--ceeeeeEEEEcCCCeEEEEEECCCcc---
Confidence 468999999999999999999732 11111 11245 88998887777788899999999987
Q ss_pred CchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCc-EEEEecCCCcccCCcCcHHH---HH-H
Q 007334 185 TSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIK-PIVAMNKCESLHNGTGSLAG---AA-A 259 (607)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p-~ilV~NK~D~~~~~~~~~~~---~~-~ 259 (607)
++...+...+..+|++++|+|+.++...++.+++.++... ++| +|+|+||+|+.+... ..+. .. .
T Consensus 136 -------~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~--gip~iIvviNKiDlv~~~~-~~~~i~~~i~~ 205 (447)
T PLN03127 136 -------DYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQV--GVPSLVVFLNKVDVVDDEE-LLELVEMELRE 205 (447)
T ss_pred -------chHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc--CCCeEEEEEEeeccCCHHH-HHHHHHHHHHH
Confidence 4555555666789999999999999988888888888877 678 578899999975321 1111 11 1
Q ss_pred HHHhcCC----CCcEEeecC---CCCC-------hHHHHHHhccchH
Q 007334 260 ESLMLGF----GDPIAISAE---TGLG-------MTELYEALRPSVE 292 (607)
Q Consensus 260 ~~~~~~~----~~~i~iSA~---~g~g-------i~eL~~~i~~~l~ 292 (607)
.+...++ -+++++||. +|.| +.+|++.|.+.++
T Consensus 206 ~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 206 LLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred HHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 1222233 246777775 5555 6677777766543
No 441
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.61 E-value=4.9e-15 Score=158.33 Aligned_cols=145 Identities=18% Similarity=0.113 Sum_probs=104.2
Q ss_pred CCEEEEecCCCCchhHHHHHhhcc------ceee---e------ccCCCCceeeeeEEEEeeeCCeeEEEecCCCCcccc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRR------REAL---V------YNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEA 184 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~------~~~~---v------~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~ 184 (607)
..+|+++|+.++|||||+++|++. .... . ....| +|.+.....+..++..+.+|||||+.
T Consensus 12 ~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG--~Ti~~~~~~~~~~~~~~~liDtpGh~--- 86 (394)
T TIGR00485 12 HVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARG--ITINTAHVEYETENRHYAHVDCPGHA--- 86 (394)
T ss_pred eEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcC--cceeeEEEEEcCCCEEEEEEECCchH---
Confidence 468999999999999999999843 1110 0 11234 78888776666677889999999997
Q ss_pred CchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEE-EEecCCCcccCCcCc---HHHHHHH
Q 007334 185 TSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPI-VAMNKCESLHNGTGS---LAGAAAE 260 (607)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~i-lV~NK~D~~~~~~~~---~~~~~~~ 260 (607)
++...+...+..+|++++|+|+.++...++.+.+.++... ++|.+ +|+||+|+....... ..+....
T Consensus 87 -------~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~--gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~ 157 (394)
T TIGR00485 87 -------DYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQV--GVPYIVVFLNKCDMVDDEELLELVEMEVREL 157 (394)
T ss_pred -------HHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCEEEEEEEecccCCHHHHHHHHHHHHHHH
Confidence 4555666677889999999999998888887777777766 67765 689999987532111 0112223
Q ss_pred HHhcCC----CCcEEeecCCCC
Q 007334 261 SLMLGF----GDPIAISAETGL 278 (607)
Q Consensus 261 ~~~~~~----~~~i~iSA~~g~ 278 (607)
+...++ .+++++||.+|.
T Consensus 158 l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 158 LSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred HHhcCCCccCccEEECcccccc
Confidence 333443 367999999885
No 442
>PRK00049 elongation factor Tu; Reviewed
Probab=99.61 E-value=7.3e-15 Score=156.76 Aligned_cols=158 Identities=19% Similarity=0.150 Sum_probs=114.1
Q ss_pred CCEEEEecCCCCchhHHHHHhhccce------eee---------ccCCCCceeeeeEEEEeeeCCeeEEEecCCCCcccc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRRE------ALV---------YNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEA 184 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~------~~v---------~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~ 184 (607)
..+|+++|++++|||||+++|++... ... ....| +|.+.....+..++..+.++||||+.
T Consensus 12 ~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg--~Ti~~~~~~~~~~~~~i~~iDtPG~~--- 86 (396)
T PRK00049 12 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARG--ITINTAHVEYETEKRHYAHVDCPGHA--- 86 (396)
T ss_pred EEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcC--eEEeeeEEEEcCCCeEEEEEECCCHH---
Confidence 46899999999999999999997311 000 11334 78888776666678899999999986
Q ss_pred CchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEE-EEecCCCcccCCcCc--H-HHHHHH
Q 007334 185 TSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPI-VAMNKCESLHNGTGS--L-AGAAAE 260 (607)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~i-lV~NK~D~~~~~~~~--~-~~~~~~ 260 (607)
++...+...+..+|++++|+|+..+...++.+++.++... ++|.+ +++||+|+....... . .+....
T Consensus 87 -------~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~--g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~ 157 (396)
T PRK00049 87 -------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV--GVPYIVVFLNKCDMVDDEELLELVEMEVREL 157 (396)
T ss_pred -------HHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHc--CCCEEEEEEeecCCcchHHHHHHHHHHHHHH
Confidence 5666667778999999999999999888888888888776 68876 589999997522110 1 112222
Q ss_pred HHhcCC----CCcEEeecCCCC----------ChHHHHHHhccch
Q 007334 261 SLMLGF----GDPIAISAETGL----------GMTELYEALRPSV 291 (607)
Q Consensus 261 ~~~~~~----~~~i~iSA~~g~----------gi~eL~~~i~~~l 291 (607)
+...++ .+++++||.+|. |+..|++.|.+.+
T Consensus 158 l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 158 LSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI 202 (396)
T ss_pred HHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence 333444 267999999975 4667777776544
No 443
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.61 E-value=5.9e-15 Score=144.46 Aligned_cols=114 Identities=18% Similarity=0.229 Sum_probs=79.6
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeec---cCCC-------------CceeeeeEEEEeee-----CCeeEEEecCCCC
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVY---NTPD-------------DHVTRDIREGLAKL-----GDLRFKVLDSAGL 180 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~---~~~~-------------~~~T~~~~~~~~~~-----~~~~~~liDTpG~ 180 (607)
+|+|+|.+|+|||||+++|+........ ...+ ..+|.......+.+ ....+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6999999999999999999975432210 0000 01222222222221 2467999999999
Q ss_pred ccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcc
Q 007334 181 ETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESL 247 (607)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~ 247 (607)
. ++...+..++..+|++++|+|++++.+.....+.+.+... ++|+++|+||+|+.
T Consensus 82 ~----------~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~--~~p~iiviNK~D~~ 136 (213)
T cd04167 82 V----------NFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILE--GLPIVLVINKIDRL 136 (213)
T ss_pred c----------chHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc--CCCEEEEEECcccC
Confidence 8 4555667888999999999999988877665555555443 68999999999986
No 444
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.61 E-value=4.2e-15 Score=161.57 Aligned_cols=149 Identities=30% Similarity=0.366 Sum_probs=101.7
Q ss_pred cCCceEEEEcCCCCchhHHHHHhhcCCceeec--------------------------------CCCCceeeeEEEEEEE
Q 007334 322 KLPLQLAIVGRPNVGKSTLLNALLQEDRVLVG--------------------------------PEAGLTRDSVRVHFEY 369 (607)
Q Consensus 322 ~~~~~v~ivG~~nvGKSslin~l~~~~~~~~~--------------------------------~~~gtT~~~~~~~~~~ 369 (607)
+..++|+++|++|+|||||+++|+.....+.. ...|+|.+.....+++
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 34589999999999999999999865433221 1135677877777888
Q ss_pred cCeEEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcC-CcEEEEEeCccCCC
Q 007334 370 QGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEG-RGLVVIVNKMDLLS 438 (607)
Q Consensus 370 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~-~p~ivv~NK~Dl~~ 438 (607)
++.++.||||||+.++ . ..+...+..+|++++|+|+..+ .....+ +|+|+|+||+|+.+
T Consensus 105 ~~~~i~~iDTPGh~~f---------~-~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~ 174 (474)
T PRK05124 105 EKRKFIIADTPGHEQY---------T-RNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVD 174 (474)
T ss_pred CCcEEEEEECCCcHHH---------H-HHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeecccc
Confidence 8899999999996433 1 1233456789999999999865 111223 57899999999975
Q ss_pred CcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHH
Q 007334 439 GRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAV 483 (607)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l 483 (607)
.. ...++.+.+.+..-+ +.+......+++++||++|.|++++
T Consensus 175 ~~--~~~~~~i~~~l~~~~-~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 175 YS--EEVFERIREDYLTFA-EQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred ch--hHHHHHHHHHHHHHH-HhcCCCCCceEEEEEeecCCCcccc
Confidence 32 222333333332211 1222123578999999999999865
No 445
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.61 E-value=6.4e-15 Score=158.96 Aligned_cols=150 Identities=23% Similarity=0.246 Sum_probs=105.0
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCce------------------------------eecCCCCceeeeEEEEEEEcCe
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRV------------------------------LVGPEAGLTRDSVRVHFEYQGR 372 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~------------------------------~~~~~~gtT~~~~~~~~~~~~~ 372 (607)
+.++|+++|+.++|||||+.+|+..... ......|+|.+.....+++++.
T Consensus 6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~ 85 (446)
T PTZ00141 6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (446)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCe
Confidence 3478999999999999999999752110 1112448899988888889999
Q ss_pred EEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh-----------------hHHhcCCc-EEEEEeCc
Q 007334 373 TVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV-----------------RAVEEGRG-LVVIVNKM 434 (607)
Q Consensus 373 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~-----------------~~~~~~~p-~ivv~NK~ 434 (607)
.+.|+||||+.++. ..+...+..+|++++|+|++++ .....++| +|+++||+
T Consensus 86 ~i~lIDtPGh~~f~----------~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKm 155 (446)
T PTZ00141 86 YFTIIDAPGHRDFI----------KNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKM 155 (446)
T ss_pred EEEEEECCChHHHH----------HHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEcc
Confidence 99999999975541 3345667789999999999863 12235776 67999999
Q ss_pred cCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHH
Q 007334 435 DLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIA 482 (607)
Q Consensus 435 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~ 482 (607)
|..........++.+.+.+...+...-.....+|++++||.+|.|+.+
T Consensus 156 D~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 156 DDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 954321123445555555544443321122358999999999999864
No 446
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.61 E-value=1.2e-14 Score=153.80 Aligned_cols=162 Identities=23% Similarity=0.234 Sum_probs=110.6
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee------------------------CCeeEEEec
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL------------------------GDLRFKVLD 176 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~------------------------~~~~~~liD 176 (607)
.+|+|||.||||||||||+|++.+. .+.+.|+ +|++...+.... ....+.+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~-~~~~y~f--~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D 78 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADV-EIANYPF--TTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELID 78 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcc-cccCCCC--cceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEE
Confidence 4799999999999999999998765 4567777 888888876542 124689999
Q ss_pred CCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCC------------C-HhHHH--------------------
Q 007334 177 SAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGL------------H-PLDLE-------------------- 223 (607)
Q Consensus 177 TpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~------------~-~~~~~-------------------- 223 (607)
|||+......+. ......+..++.||++++|+|+.... . ..+.+
T Consensus 79 ~aGl~~ga~~g~---glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~ 155 (396)
T PRK09602 79 VAGLVPGAHEGR---GLGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHDPVEDIKFLEEELDMWIYGILEKNWEK 155 (396)
T ss_pred cCCcCCCccchh---hHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 999975432221 23345567799999999999997321 1 11110
Q ss_pred -----------------------------HHHHHHhh----------------------CCCCcEEEEecCCCcccCCcC
Q 007334 224 -----------------------------VGKWLRKH----------------------APQIKPIVAMNKCESLHNGTG 252 (607)
Q Consensus 224 -----------------------------~~~~l~~~----------------------~~~~p~ilV~NK~D~~~~~~~ 252 (607)
+.++|++. ...+|+|+|+||+|.....
T Consensus 156 ~~~~~~~~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~~~~~~~~~~~~~~I~~~~l~t~KPvI~VlNK~D~~~~~-- 233 (396)
T PRK09602 156 FSRKAQAEKFDIEEALAEQLSGLGINEEHVKEALRELGLPEDPSKWTDEDLLELARELRKISKPMVIAANKADLPPAE-- 233 (396)
T ss_pred HHHHHhcCCcchHHHHHHHHhhhccCHHHHHHHHHHcCCcCcccCCCHHHHHHHHHhhhhcCCCEEEEEEchhcccch--
Confidence 01111110 0248999999999976321
Q ss_pred cHHHHHHHHHhcCCCCcEEeecCCCCChHH-HHHHhccchHH
Q 007334 253 SLAGAAAESLMLGFGDPIAISAETGLGMTE-LYEALRPSVED 293 (607)
Q Consensus 253 ~~~~~~~~~~~~~~~~~i~iSA~~g~gi~e-L~~~i~~~l~~ 293 (607)
.....+...++.+++++||+++.++++ |.+.+.+.++.
T Consensus 234 ---~~l~~i~~~~~~~vvpISA~~e~~l~~~l~~~i~~~lp~ 272 (396)
T PRK09602 234 ---ENIERLKEEKYYIVVPTSAEAELALRRAAKAGLIDYIPG 272 (396)
T ss_pred ---HHHHHHHhcCCCcEEEEcchhhhhHHHHHHHhHHhhCCC
Confidence 112223333566789999999999999 78888877754
No 447
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.60 E-value=5.2e-15 Score=158.43 Aligned_cols=145 Identities=26% Similarity=0.320 Sum_probs=99.6
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeec--------------------------------CCCCceeeeEEEEEEEcCe
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVG--------------------------------PEAGLTRDSVRVHFEYQGR 372 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~--------------------------------~~~gtT~~~~~~~~~~~~~ 372 (607)
++|+++|++++|||||+++|+.....+.. ..-|+|+|.....+++++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 47999999999999999999754322111 1236788988888889999
Q ss_pred EEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCC-cEEEEEeCccCCCCcC
Q 007334 373 TVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGR-GLVVIVNKMDLLSGRQ 441 (607)
Q Consensus 373 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~-p~ivv~NK~Dl~~~~~ 441 (607)
++.||||||+.++. ..+...+..+|++|+|+|+..+ .....++ ++|+|+||+|+.+..
T Consensus 81 ~~~liDtPGh~~f~----------~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~- 149 (406)
T TIGR02034 81 KFIVADTPGHEQYT----------RNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYD- 149 (406)
T ss_pred EEEEEeCCCHHHHH----------HHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccch-
Confidence 99999999965431 1233567789999999999765 1112244 588999999997532
Q ss_pred chHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHH
Q 007334 442 NSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAV 483 (607)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l 483 (607)
...++.+.+.+..-+ +.+. ...++++++||++|.|++++
T Consensus 150 -~~~~~~i~~~~~~~~-~~~~-~~~~~iipiSA~~g~ni~~~ 188 (406)
T TIGR02034 150 -EEVFENIKKDYLAFA-EQLG-FRDVTFIPLSALKGDNVVSR 188 (406)
T ss_pred -HHHHHHHHHHHHHHH-HHcC-CCCccEEEeecccCCCCccc
Confidence 223333333332111 2222 13578999999999998754
No 448
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.60 E-value=9e-15 Score=154.83 Aligned_cols=88 Identities=31% Similarity=0.306 Sum_probs=68.4
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEE------------------------cCeEEEEEecC
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEY------------------------QGRTVYLVDTA 380 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~------------------------~~~~~~liDTp 380 (607)
++|++||.||||||||+|+|++.. +.++++|++|+++..+...+ ...++++||||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~-~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a 80 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLAD-VEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA 80 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc-ccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence 689999999999999999999874 57789999999998876442 12467899999
Q ss_pred CCcccccccCcchhHHHHHHHHHhhccEEEEEeccc
Q 007334 381 GWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAE 416 (607)
Q Consensus 381 G~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~ 416 (607)
|+.+... .+ .. ...+.+..++.||++++|+|+.
T Consensus 81 Gl~~ga~-~g-~g-lg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 81 GLVPGAH-EG-RG-LGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred CcCCCcc-ch-hh-HHHHHHHHHHHCCEEEEEEeCC
Confidence 9876421 11 11 2245667899999999999996
No 449
>PRK12739 elongation factor G; Reviewed
Probab=99.60 E-value=8.6e-15 Score=166.89 Aligned_cols=116 Identities=18% Similarity=0.170 Sum_probs=96.1
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccce-----eeecc------------CCCCceeeeeEEEEeeeCCeeEEEecCCCCc
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRRE-----ALVYN------------TPDDHVTRDIREGLAKLGDLRFKVLDSAGLE 181 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~-----~~v~~------------~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~ 181 (607)
.+.+|+|+|++|+|||||+|+|+.... ..+.+ ..+ +|.+.....+.+++.++.+|||||+.
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rg--iti~~~~~~~~~~~~~i~liDTPG~~ 84 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERG--ITITSAATTCFWKGHRINIIDTPGHV 84 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcC--CCccceeEEEEECCEEEEEEcCCCHH
Confidence 367899999999999999999975321 11221 334 88888888899999999999999987
Q ss_pred cccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCccc
Q 007334 182 TEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLH 248 (607)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~ 248 (607)
++...+..++..+|++++|+|+..+...++..++.++.+. ++|.|+++||+|+..
T Consensus 85 ----------~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~--~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 85 ----------DFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKY--GVPRIVFVNKMDRIG 139 (691)
T ss_pred ----------HHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc--CCCEEEEEECCCCCC
Confidence 4555678889999999999999999988888888888776 789999999999875
No 450
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.60 E-value=2.9e-14 Score=126.78 Aligned_cols=149 Identities=22% Similarity=0.327 Sum_probs=109.6
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
.++|.++|..|+||||++++|.+.....++|+.|.. -....+++.++.+||..|+.... .....|+
T Consensus 16 E~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~----Iktl~~~~~~L~iwDvGGq~~lr----------~~W~nYf 81 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQ----IKTLEYKGYTLNIWDVGGQKTLR----------SYWKNYF 81 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhcCCCccccCCcccee----eEEEEecceEEEEEEcCCcchhH----------HHHHHhh
Confidence 589999999999999999999998755555555543 34667889999999999964332 3455788
Q ss_pred hhccEEEEEeccchh---------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 404 MRAHVVALVLDAEEV---------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 404 ~~ad~~llViD~~~~---------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
..+|++|+|+|.++. .....+.|++|++||.|+...-... .+...+ ++... ......+
T Consensus 82 estdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~----~i~~~~--~L~~l-~ks~~~~ 154 (185)
T KOG0073|consen 82 ESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLE----EISKAL--DLEEL-AKSHHWR 154 (185)
T ss_pred hccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHH----HHHHhh--CHHHh-ccccCce
Confidence 899999999999886 1123579999999999998542211 111111 12222 2345679
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
++-|||.+|+++.+-++++...+.+
T Consensus 155 l~~cs~~tge~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 155 LVKCSAVTGEDLLEGIDWLCDDLMS 179 (185)
T ss_pred EEEEeccccccHHHHHHHHHHHHHH
Confidence 9999999999999988888776543
No 451
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.60 E-value=2.8e-16 Score=138.12 Aligned_cols=146 Identities=18% Similarity=0.215 Sum_probs=98.8
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..+|++++|..-||||||+-+++.. .+.-..............+.+.+. .+.||||||+.++.. .+ -
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~En-kFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHA-LG---------P 80 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVEN-KFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHA-LG---------P 80 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHh-hcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhc-cC---------c
Confidence 4589999999999999999999843 332222221122223333344444 567999999766531 11 1
Q ss_pred HHHhhccEEEEEeccchhh--------------HHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEVR--------------AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~--------------~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
-|+++++++|+|||.++.. .....+.++||+||+||.+.+. +..+....++..-+
T Consensus 81 IYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~-----------Vt~qeAe~YAesvG 149 (218)
T KOG0088|consen 81 IYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQ-----------VTRQEAEAYAESVG 149 (218)
T ss_pred eEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhh-----------hhHHHHHHHHHhhc
Confidence 2567899999999999861 1123567899999999976532 22222333334457
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
+.++++||+.+.||.++|+.+...
T Consensus 150 A~y~eTSAk~N~Gi~elFe~Lt~~ 173 (218)
T KOG0088|consen 150 ALYMETSAKDNVGISELFESLTAK 173 (218)
T ss_pred hhheecccccccCHHHHHHHHHHH
Confidence 789999999999999999988654
No 452
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.60 E-value=1.2e-14 Score=162.02 Aligned_cols=148 Identities=28% Similarity=0.415 Sum_probs=102.9
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCcee--------------ecCCCCceeeeEEEEEEEc-----CeEEEEEecCCCcc
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVL--------------VGPEAGLTRDSVRVHFEYQ-----GRTVYLVDTAGWLQ 384 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~--------------~~~~~gtT~~~~~~~~~~~-----~~~~~liDTpG~~~ 384 (607)
..+++++|+.++|||||+++|+.....+ .....|+|.......+.|. +..+.||||||+.+
T Consensus 7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d 86 (600)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD 86 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence 3579999999999999999998532111 1123477777665566663 46788999999866
Q ss_pred cccccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcH
Q 007334 385 REKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVP 454 (607)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~ 454 (607)
+. ....+++..||++|+|+|++++ .....++|+|+|+||+|+..... +...+
T Consensus 87 F~----------~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~-----~~v~~--- 148 (600)
T PRK05433 87 FS----------YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADP-----ERVKQ--- 148 (600)
T ss_pred HH----------HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccH-----HHHHH---
Confidence 52 2244678899999999999875 22346899999999999865321 11111
Q ss_pred HHHHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 455 QEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 455 ~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
++...+. .....++++||++|.|++++++.+.+.+
T Consensus 149 -ei~~~lg-~~~~~vi~iSAktG~GI~~Ll~~I~~~l 183 (600)
T PRK05433 149 -EIEDVIG-IDASDAVLVSAKTGIGIEEVLEAIVERI 183 (600)
T ss_pred -HHHHHhC-CCcceEEEEecCCCCCHHHHHHHHHHhC
Confidence 2222211 1123589999999999999999987754
No 453
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=99.60 E-value=6.4e-15 Score=153.12 Aligned_cols=187 Identities=19% Similarity=0.218 Sum_probs=121.6
Q ss_pred HHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEE
Q 007334 192 RTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIA 271 (607)
Q Consensus 192 ~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (607)
++.++....++.+|+||.++|++++.-+....+.+++.+..+.+..++++||+|+++... ......+|...++ .++.
T Consensus 163 E~WRQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~~q--r~aWa~YF~~~ni-~~vf 239 (562)
T KOG1424|consen 163 EIWRQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLPPEQ--RVAWAEYFRQNNI-PVVF 239 (562)
T ss_pred HHHHHHHHHHhhcceEEEEeecCCccccCChhHHHHHhccccccceEEEEehhhcCCHHH--HHHHHHHHHhcCc-eEEE
Confidence 677888999999999999999999988888788888888766688899999999998632 2223334555555 7788
Q ss_pred eecCCC----C--ChHHHHHHhccchHHHHhh--------hhcccc-c-cCCC-C------CCCCCCCCcccccCCceEE
Q 007334 272 ISAETG----L--GMTELYEALRPSVEDYMLR--------VLNDSC-T-QNNS-S------TQDVTSPEDDESKLPLQLA 328 (607)
Q Consensus 272 iSA~~g----~--gi~eL~~~i~~~l~~~~~~--------~l~~~~-~-~~~~-~------~~~~~~~~~~~~~~~~~v~ 328 (607)
.||..- + ++.+-...... ....... .+.... . .+.. . +.-+........+..+.|+
T Consensus 240 ~SA~~at~~~~~~~~~e~~r~~d~-~~~~~~~~~~~~~d~~i~r~~~d~~e~~~v~~~~~~s~~~~~~t~~~~~~~vtVG 318 (562)
T KOG1424|consen 240 FSALAATEQLESKVLKEDRRSLDG-VSRALGAIFVGEVDLKIARDKGDGEEIEDVEQLRLISAMEPTPTGERYKDVVTVG 318 (562)
T ss_pred Eecccccccccccchhhhhhcccc-hhhhccccccccchhhhhhhcccccchhhHHhhhhhhccccCCCCcCCCceeEEE
Confidence 888761 1 12211111100 0000000 000000 0 0000 0 0000001111112247899
Q ss_pred EEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCccc
Q 007334 329 IVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQR 385 (607)
Q Consensus 329 ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~ 385 (607)
+||.|||||||+||+|.|.....|+.+||-|.++.+..+ ...+.|.|+||+.-.
T Consensus 319 ~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~l---s~~v~LCDCPGLVfP 372 (562)
T KOG1424|consen 319 FVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFL---SPSVCLCDCPGLVFP 372 (562)
T ss_pred eecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEc---CCCceecCCCCcccc
Confidence 999999999999999999999999999999999887654 356789999998655
No 454
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.60 E-value=1.3e-14 Score=142.65 Aligned_cols=153 Identities=24% Similarity=0.225 Sum_probs=93.9
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCcee------e-------cCCCCcee------------------------eeEEEEEE
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVL------V-------GPEAGLTR------------------------DSVRVHFE 368 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~------~-------~~~~gtT~------------------------~~~~~~~~ 368 (607)
||+++|+.++|||||+++|+...... . .-..|.|. +.-...++
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 58999999999999999998431100 0 00011111 11012344
Q ss_pred EcCeEEEEEecCCCcccccccCcchhHHHHHHHHHh--hccEEEEEeccchh----------hHHhcCCcEEEEEeCccC
Q 007334 369 YQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLM--RAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDL 436 (607)
Q Consensus 369 ~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~--~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl 436 (607)
..+..+.++||||+.++. ..+...+. .+|++++|+|+..+ .....++|+++|+||+|+
T Consensus 81 ~~~~~i~liDtpG~~~~~----------~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~ 150 (224)
T cd04165 81 KSSKLVTFIDLAGHERYL----------KTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDL 150 (224)
T ss_pred eCCcEEEEEECCCcHHHH----------HHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccc
Confidence 567889999999975441 12233443 68999999999765 334578999999999998
Q ss_pred CCCcCchHHHHHHHHhcHHH-----------------HHhhCCCCCCCCEEEcccCCCCCHHHHHHHHH
Q 007334 437 LSGRQNSALYKRVKEAVPQE-----------------IQTVIPQVTGIPVVFTSALEGRGRIAVMHQVI 488 (607)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~ 488 (607)
.+........+.+.+.+... ..........+|++.+||.+|+|+++|...|.
T Consensus 151 ~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 151 APANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred cCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 75432222222222211100 00011223356999999999999998876653
No 455
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.59 E-value=5.9e-15 Score=166.82 Aligned_cols=146 Identities=24% Similarity=0.308 Sum_probs=98.4
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecC----------C----------------------CCceeeeEEEEEEEcC
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGP----------E----------------------AGLTRDSVRVHFEYQG 371 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~----------~----------------------~gtT~~~~~~~~~~~~ 371 (607)
.++|+++|++|+|||||+|+|+.....++.. . .|+|+|.....+++++
T Consensus 24 ~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~~ 103 (632)
T PRK05506 24 LLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATPK 103 (632)
T ss_pred eeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccCC
Confidence 4789999999999999999999765443311 2 2556666666777888
Q ss_pred eEEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcC-CcEEEEEeCccCCCCc
Q 007334 372 RTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEG-RGLVVIVNKMDLLSGR 440 (607)
Q Consensus 372 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~-~p~ivv~NK~Dl~~~~ 440 (607)
.++.|+||||+.++ . ..+...+..+|++++|+|+..+ .....+ +|+|+|+||+|+.+..
T Consensus 104 ~~~~liDtPG~~~f---------~-~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~ 173 (632)
T PRK05506 104 RKFIVADTPGHEQY---------T-RNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYD 173 (632)
T ss_pred ceEEEEECCChHHH---------H-HHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccch
Confidence 89999999996432 1 1233467789999999999765 111234 5788999999997531
Q ss_pred CchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHH
Q 007334 441 QNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAV 483 (607)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l 483 (607)
.+.++.+...+..- .+.+.. ..++++++||++|.|+++.
T Consensus 174 --~~~~~~i~~~i~~~-~~~~~~-~~~~iipiSA~~g~ni~~~ 212 (632)
T PRK05506 174 --QEVFDEIVADYRAF-AAKLGL-HDVTFIPISALKGDNVVTR 212 (632)
T ss_pred --hHHHHHHHHHHHHH-HHHcCC-CCccEEEEecccCCCcccc
Confidence 11223232222211 112221 3468999999999998753
No 456
>PRK00007 elongation factor G; Reviewed
Probab=99.59 E-value=1.4e-14 Score=164.94 Aligned_cols=116 Identities=17% Similarity=0.156 Sum_probs=95.9
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccce---e--eec------------cCCCCceeeeeEEEEeeeCCeeEEEecCCCCc
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRRE---A--LVY------------NTPDDHVTRDIREGLAKLGDLRFKVLDSAGLE 181 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~---~--~v~------------~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~ 181 (607)
.+.+|+|+|++|+|||||+|+|+.... . .+. ...+ +|.+.....+.+.+..+.++||||+.
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg--~ti~~~~~~~~~~~~~~~liDTPG~~ 86 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERG--ITITSAATTCFWKDHRINIIDTPGHV 86 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCC--CCEeccEEEEEECCeEEEEEeCCCcH
Confidence 467999999999999999999973211 1 122 1334 78888888889999999999999987
Q ss_pred cccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCccc
Q 007334 182 TEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLH 248 (607)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~ 248 (607)
++...+...+..+|++++|+|+..+...++..++..+.+. ++|.|+++||+|+..
T Consensus 87 ----------~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~--~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 87 ----------DFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKY--KVPRIAFVNKMDRTG 141 (693)
T ss_pred ----------HHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHc--CCCEEEEEECCCCCC
Confidence 4555677888999999999999999999998888888877 789999999999874
No 457
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.59 E-value=2.9e-14 Score=139.77 Aligned_cols=145 Identities=16% Similarity=0.124 Sum_probs=95.0
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEc--CeEEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQ--GRTVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.+||+++|++|||||||+++++... ......+....+.....+..+ ...+.+|||||..+.. .. ...
T Consensus 9 ~~kv~liG~~g~GKTtLi~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~---------~~-~~~ 77 (215)
T PTZ00132 9 EFKLILVGDGGVGKTTFVKRHLTGE-FEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFG---------GL-RDG 77 (215)
T ss_pred CceEEEECCCCCCHHHHHHHHHhCC-CCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhh---------hh-hHH
Confidence 5899999999999999998776443 211222222223333333333 3577899999954331 11 134
Q ss_pred HHhhccEEEEEeccchhh-------------HHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEVR-------------AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~~-------------~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
++..+|++++|+|.++.. ....+.|+++++||+|+.+.....+.. .+.+ ..+..
T Consensus 78 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~---------~~~~----~~~~~ 144 (215)
T PTZ00132 78 YYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQI---------TFHR----KKNLQ 144 (215)
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHH---------HHHH----HcCCE
Confidence 566899999999998751 122578999999999986532111110 1111 12567
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
++++||++|.|++++|..+.+.+.
T Consensus 145 ~~e~Sa~~~~~v~~~f~~ia~~l~ 168 (215)
T PTZ00132 145 YYDISAKSNYNFEKPFLWLARRLT 168 (215)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999998887654
No 458
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.59 E-value=1.7e-14 Score=141.06 Aligned_cols=115 Identities=18% Similarity=0.229 Sum_probs=83.4
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCC-------------CceeeeeEEEEeeeC----------CeeEEEecC
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPD-------------DHVTRDIREGLAKLG----------DLRFKVLDS 177 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~-------------~~~T~~~~~~~~~~~----------~~~~~liDT 177 (607)
++|+++|+.++|||||+++|+.....+.....+ ...|.........+. +..+.+|||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 369999999999999999998653221111111 012222211122222 678999999
Q ss_pred CCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcc
Q 007334 178 AGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESL 247 (607)
Q Consensus 178 pG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~ 247 (607)
||+. ++...+..++..+|++++|+|+..+.+.+...+.+.+... ++|+++|+||+|+.
T Consensus 81 PG~~----------~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~--~~p~ilviNKiD~~ 138 (222)
T cd01885 81 PGHV----------DFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKE--RVKPVLVINKIDRL 138 (222)
T ss_pred CCcc----------ccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHc--CCCEEEEEECCCcc
Confidence 9998 5666778889999999999999999988887776666554 68999999999986
No 459
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.59 E-value=2.4e-14 Score=158.89 Aligned_cols=155 Identities=19% Similarity=0.268 Sum_probs=94.6
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCC-CceeeeEEEEEEEc------C------------eEEEEEecCCCcc
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEA-GLTRDSVRVHFEYQ------G------------RTVYLVDTAGWLQ 384 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~-gtT~~~~~~~~~~~------~------------~~~~liDTpG~~~ 384 (607)
+..|+++|++|+|||||+|+|.+.. .+...+ ++|.+.....+.+. + ..+.||||||+.+
T Consensus 6 ~p~V~i~Gh~~~GKTSLl~~l~~~~--v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 6 QPIVVVLGHVDHGKTTLLDKIRGTA--VAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcc--cccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 4579999999999999999998763 333333 33433211111110 1 1278999999754
Q ss_pred cccccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcC---c---------
Q 007334 385 REKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQ---N--------- 442 (607)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~---~--------- 442 (607)
+ ..+. .+.+..+|++++|+|++++ .....++|+++++||+|+..... .
T Consensus 84 f---------~~~~-~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~ 153 (586)
T PRK04004 84 F---------TNLR-KRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDAPFLESIEK 153 (586)
T ss_pred H---------HHHH-HHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCchHHHHHhh
Confidence 4 2222 2456679999999999873 22346899999999999863211 0
Q ss_pred -----hHHHHHHHHhcHHHHHhh-C---------CCCCCCCEEEcccCCCCCHHHHHHHHHHH
Q 007334 443 -----SALYKRVKEAVPQEIQTV-I---------PQVTGIPVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 443 -----~~~~~~~~~~~~~~~~~~-~---------~~~~~~~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
.+.++.....+...+.+. + .....++++++||++|+|++++++.+...
T Consensus 154 ~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~ 216 (586)
T PRK04004 154 QSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGL 216 (586)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHH
Confidence 001111111111111100 0 11235789999999999999999887543
No 460
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=99.59 E-value=4.4e-15 Score=148.82 Aligned_cols=161 Identities=22% Similarity=0.311 Sum_probs=121.4
Q ss_pred HHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcC--CC-C
Q 007334 192 RTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLG--FG-D 268 (607)
Q Consensus 192 ~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~--~~-~ 268 (607)
+........+..+|++|.|+|+++|....-..+.++|++..+.+.+|+|+|||||++.. ....+...+. ++ -
T Consensus 202 RIW~ELyKViDSSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPtw-----vt~~Wv~~lSkeyPTi 276 (572)
T KOG2423|consen 202 RIWGELYKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPTW-----VTAKWVRHLSKEYPTI 276 (572)
T ss_pred HHHHHHHHhhcccceeEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeeccccccHH-----HHHHHHHHHhhhCcce
Confidence 34445556788999999999999999888888999999998899999999999999843 2333333332 22 2
Q ss_pred cEEeecCCCCChHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhcCC
Q 007334 269 PIAISAETGLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQED 348 (607)
Q Consensus 269 ~i~iSA~~g~gi~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~~~ 348 (607)
.|..|..+..|-..|++.+.++..- ...+..+.|++||.||+||||+||+|-...
T Consensus 277 AfHAsi~nsfGKgalI~llRQf~kL-------------------------h~dkkqISVGfiGYPNvGKSSiINTLR~Kk 331 (572)
T KOG2423|consen 277 AFHASINNSFGKGALIQLLRQFAKL-------------------------HSDKKQISVGFIGYPNVGKSSIINTLRKKK 331 (572)
T ss_pred eeehhhcCccchhHHHHHHHHHHhh-------------------------ccCccceeeeeecCCCCchHHHHHHHhhcc
Confidence 3677878888888888776654321 011235789999999999999999999999
Q ss_pred ceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCccc
Q 007334 349 RVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQR 385 (607)
Q Consensus 349 ~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~ 385 (607)
.+.+.|+||-|.-..+.. --+.+.|||+||+.-.
T Consensus 332 VCkvAPIpGETKVWQYIt---LmkrIfLIDcPGvVyp 365 (572)
T KOG2423|consen 332 VCKVAPIPGETKVWQYIT---LMKRIFLIDCPGVVYP 365 (572)
T ss_pred cccccCCCCcchHHHHHH---HHhceeEecCCCccCC
Confidence 999999999875433222 1357889999998655
No 461
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.59 E-value=2.7e-14 Score=144.00 Aligned_cols=105 Identities=25% Similarity=0.360 Sum_probs=77.1
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceee---------------cCC------CCceeeeEEEEEEEcCeEEEEEecCCCc
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLV---------------GPE------AGLTRDSVRVHFEYQGRTVYLVDTAGWL 383 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~---------------~~~------~gtT~~~~~~~~~~~~~~~~liDTpG~~ 383 (607)
..|+++|++|+|||||+++|+.....+. .++ -|.+.......+++++.++.||||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 3699999999999999999985422211 111 1334445556788899999999999975
Q ss_pred ccccccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCC
Q 007334 384 QREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSG 439 (607)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~ 439 (607)
++. ..+..+++.+|++|+|+|++.+ .....++|+++++||+|+...
T Consensus 83 df~----------~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a 138 (267)
T cd04169 83 DFS----------EDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGR 138 (267)
T ss_pred HHH----------HHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCC
Confidence 442 2345678899999999999875 122358999999999998643
No 462
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.58 E-value=8.7e-15 Score=156.81 Aligned_cols=151 Identities=23% Similarity=0.225 Sum_probs=95.7
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCc--eeecCCCCceeeeEEEEEE--------------------E------cCeEEE
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDR--VLVGPEAGLTRDSVRVHFE--------------------Y------QGRTVY 375 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~--~~~~~~~gtT~~~~~~~~~--------------------~------~~~~~~ 375 (607)
.++|+++|++++|||||+++|++... .......|+|.+.....+. . .+..+.
T Consensus 4 ~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 83 (406)
T TIGR03680 4 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRVS 83 (406)
T ss_pred eEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEEE
Confidence 47899999999999999999986421 1111123444443211110 0 146789
Q ss_pred EEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh-----------hHHhcC-CcEEEEEeCccCCCCcCch
Q 007334 376 LVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV-----------RAVEEG-RGLVVIVNKMDLLSGRQNS 443 (607)
Q Consensus 376 liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~-----------~~~~~~-~p~ivv~NK~Dl~~~~~~~ 443 (607)
+|||||+.++. ..+...+..+|++++|+|++++ .....+ +|+++|+||+|+.+.....
T Consensus 84 liDtPGh~~f~----------~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~~~~ 153 (406)
T TIGR03680 84 FVDAPGHETLM----------ATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSKEKAL 153 (406)
T ss_pred EEECCCHHHHH----------HHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCHHHHH
Confidence 99999964431 2234556679999999999863 111233 5799999999998642222
Q ss_pred HHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHH
Q 007334 444 ALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
+.++.+.+ .+... ...+.+++++||++|.|++++++.+...
T Consensus 154 ~~~~~i~~----~l~~~--~~~~~~ii~vSA~~g~gi~~L~e~L~~~ 194 (406)
T TIGR03680 154 ENYEEIKE----FVKGT--VAENAPIIPVSALHNANIDALLEAIEKF 194 (406)
T ss_pred HHHHHHHh----hhhhc--ccCCCeEEEEECCCCCChHHHHHHHHHh
Confidence 22222221 11111 1235789999999999999999888754
No 463
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.58 E-value=7.9e-15 Score=148.78 Aligned_cols=150 Identities=15% Similarity=0.229 Sum_probs=103.2
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeec--c-CCC------------CceeeeeEEEEeeeCCeeEEEecCCCCccccCc
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVY--N-TPD------------DHVTRDIREGLAKLGDLRFKVLDSAGLETEATS 186 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~--~-~~~------------~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~ 186 (607)
+|+|+|++|+|||||+|+|+.....+.. . ..+ ...|.......+.+.+..+.+|||||+.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~----- 75 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYA----- 75 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHH-----
Confidence 4899999999999999999854321100 0 011 0133344456677788999999999987
Q ss_pred hhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHH-hcC
Q 007334 187 GSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESL-MLG 265 (607)
Q Consensus 187 ~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~-~~~ 265 (607)
++...+..++..+|++++|+|++.+.......+.+++... ++|.++|+||+|..... .......+. .++
T Consensus 76 -----~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~--~~p~iivvNK~D~~~~~---~~~~~~~l~~~~~ 145 (268)
T cd04170 76 -----DFVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEA--GIPRIIFINKMDRERAD---FDKTLAALQEAFG 145 (268)
T ss_pred -----HHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc--CCCEEEEEECCccCCCC---HHHHHHHHHHHhC
Confidence 5556677889999999999999998877766666777665 78999999999987642 222222222 233
Q ss_pred CCCc--EEeecCCCCChHHHHHHh
Q 007334 266 FGDP--IAISAETGLGMTELYEAL 287 (607)
Q Consensus 266 ~~~~--i~iSA~~g~gi~eL~~~i 287 (607)
. ++ +.++..+|.|+..+.+.+
T Consensus 146 ~-~~~~~~ip~~~~~~~~~~vd~~ 168 (268)
T cd04170 146 R-PVVPLQLPIGEGDDFKGVVDLL 168 (268)
T ss_pred C-CeEEEEecccCCCceeEEEEcc
Confidence 3 33 455567777775554443
No 464
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.58 E-value=1.7e-14 Score=154.44 Aligned_cols=160 Identities=18% Similarity=0.100 Sum_probs=104.8
Q ss_pred CCEEEEecCCCCchhHHHHHhhcccee--eeccCCCCceeeeeEEEEeee---------------------C-----Cee
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREA--LVYNTPDDHVTRDIREGLAKL---------------------G-----DLR 171 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~--~v~~~~~~~~T~~~~~~~~~~---------------------~-----~~~ 171 (607)
..+|+++|+.++|||||+.+|++.... ......+ .|.+.......+ + ...
T Consensus 9 ~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg--~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (411)
T PRK04000 9 EVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRG--ITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR 86 (411)
T ss_pred cEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcC--cEEEecccccccccccccCccccccccccccccccccccccE
Confidence 468999999999999999999763110 0011123 444433221111 0 257
Q ss_pred EEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCC-CHhHHHHHHHHHhhCCCCcEEEEecCCCcccCC
Q 007334 172 FKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGL-HPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNG 250 (607)
Q Consensus 172 ~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~-~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~ 250 (607)
+.+|||||+. ++.......+..+|++++|+|++++. ..+..+.+.++... ...|+++|+||+|+.+..
T Consensus 87 i~liDtPG~~----------~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~-~i~~iiVVlNK~Dl~~~~ 155 (411)
T PRK04000 87 VSFVDAPGHE----------TLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDII-GIKNIVIVQNKIDLVSKE 155 (411)
T ss_pred EEEEECCCHH----------HHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHc-CCCcEEEEEEeeccccch
Confidence 9999999987 55556666777899999999999886 56555555666554 124689999999997642
Q ss_pred cCc-HHHHHHHHH-hc--CCCCcEEeecCCCCChHHHHHHhccchH
Q 007334 251 TGS-LAGAAAESL-ML--GFGDPIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 251 ~~~-~~~~~~~~~-~~--~~~~~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
... .......+. .. ...+++++||++|.|+++|++.|.+.++
T Consensus 156 ~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 156 RALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred hHHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 210 011111111 11 1126799999999999999999876553
No 465
>PTZ00258 GTP-binding protein; Provisional
Probab=99.58 E-value=1.1e-14 Score=152.23 Aligned_cols=90 Identities=27% Similarity=0.251 Sum_probs=72.9
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC-----------------eEEEEEecCCCccc
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG-----------------RTVYLVDTAGWLQR 385 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~-----------------~~~~liDTpG~~~~ 385 (607)
..++|+|||.||||||||+|+|++.. ..++++|+||+++..+.+.+.+ .++.++||||+...
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~-~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQ-VPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCc-ccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 35799999999999999999998764 7899999999999998887653 34899999999865
Q ss_pred ccccCcchhHHHHHHHHHhhccEEEEEeccc
Q 007334 386 EKEKGPASLSVMQSRKNLMRAHVVALVLDAE 416 (607)
Q Consensus 386 ~~~~~~~~~~~~~~~~~i~~ad~~llViD~~ 416 (607)
... + +. ...+.+..++.||++++|+|+.
T Consensus 99 a~~-g-~g-Lg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASE-G-EG-LGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred Ccc-h-hH-HHHHHHHHHHHCCEEEEEEeCC
Confidence 211 1 11 2246778899999999999983
No 466
>KOG2484 consensus GTPase [General function prediction only]
Probab=99.58 E-value=1e-14 Score=147.37 Aligned_cols=174 Identities=20% Similarity=0.250 Sum_probs=116.2
Q ss_pred HHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEE
Q 007334 192 RTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIA 271 (607)
Q Consensus 192 ~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (607)
.+.......++.+|+||.|+|+++|......++-+++....+++..|+|+||+|+++.+. .+....++...+. .+.+
T Consensus 135 aY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv--~e~Wl~YLr~~~p-tv~f 211 (435)
T KOG2484|consen 135 AYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREV--VEKWLVYLRREGP-TVAF 211 (435)
T ss_pred HHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCHHH--HHHHHHHHHhhCC-ccee
Confidence 455666778899999999999999998888788888876666799999999999998633 2223333444333 4433
Q ss_pred eecCCCCChHH-HHH-HhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhcCCc
Q 007334 272 ISAETGLGMTE-LYE-ALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDR 349 (607)
Q Consensus 272 iSA~~g~gi~e-L~~-~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~~~~ 349 (607)
.++..+.+..+ .+. ..+ .-.+.....+.+.+.. ..-+..++|+|+|.|||||||+||.|.....
T Consensus 212 kast~~~~~~~~~~~~s~c-~gae~l~~~lgny~~~-------------~~lk~sIrvGViG~PNVGKSSvINsL~~~k~ 277 (435)
T KOG2484|consen 212 KASTQMQNSNSKNLQSSVC-FGAETLMKVLGNYCRK-------------GELKTSIRVGIIGYPNVGKSSVINSLKRRKA 277 (435)
T ss_pred ecccccccccccccccchh-hhHHHHHHHhcCcccc-------------cccCcceEeeeecCCCCChhHHHHHHHHhcc
Confidence 33333222210 000 000 0011112222222111 1123468999999999999999999998888
Q ss_pred eeecCCCCceeeeEEEEEEEcCeEEEEEecCCCccc
Q 007334 350 VLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQR 385 (607)
Q Consensus 350 ~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~ 385 (607)
+.+++.||.|+...... -+..+.|+|.||+.-.
T Consensus 278 C~vg~~pGvT~smqeV~---Ldk~i~llDsPgiv~~ 310 (435)
T KOG2484|consen 278 CNVGNVPGVTRSMQEVK---LDKKIRLLDSPGIVPP 310 (435)
T ss_pred ccCCCCccchhhhhhee---ccCCceeccCCceeec
Confidence 89999999999876544 3678899999998655
No 467
>PLN03126 Elongation factor Tu; Provisional
Probab=99.58 E-value=2.6e-14 Score=154.81 Aligned_cols=146 Identities=16% Similarity=0.081 Sum_probs=107.2
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeee---------------ccCCCCceeeeeEEEEeeeCCeeEEEecCCCCcccc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALV---------------YNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEA 184 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v---------------~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~ 184 (607)
..+|+++|++|+|||||+++|+.....+. ....+ .|.+.....+..++..+.+|||||+.
T Consensus 81 ~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rG--iTi~~~~~~~~~~~~~i~liDtPGh~--- 155 (478)
T PLN03126 81 HVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARG--ITINTATVEYETENRHYAHVDCPGHA--- 155 (478)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCC--eeEEEEEEEEecCCcEEEEEECCCHH---
Confidence 46899999999999999999996321110 11233 77787777777788999999999998
Q ss_pred CchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCc-EEEEecCCCcccCCcC--cHH-HHHHH
Q 007334 185 TSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIK-PIVAMNKCESLHNGTG--SLA-GAAAE 260 (607)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p-~ilV~NK~D~~~~~~~--~~~-~~~~~ 260 (607)
++...+...+..+|++++|+|+..+...+..+++..+... ++| +|+++||+|+...+.. ... +....
T Consensus 156 -------~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~--gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~ 226 (478)
T PLN03126 156 -------DYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQV--GVPNMVVFLNKQDQVDDEELLELVELEVREL 226 (478)
T ss_pred -------HHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCeEEEEEecccccCHHHHHHHHHHHHHHH
Confidence 5666777788899999999999999988887777777766 678 7789999999753211 011 12223
Q ss_pred HHhcCCC----CcEEeecCCCCC
Q 007334 261 SLMLGFG----DPIAISAETGLG 279 (607)
Q Consensus 261 ~~~~~~~----~~i~iSA~~g~g 279 (607)
+...++. +++++||.+|.+
T Consensus 227 l~~~g~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 227 LSSYEFPGDDIPIISGSALLALE 249 (478)
T ss_pred HHhcCCCcCcceEEEEEcccccc
Confidence 3344442 568999998853
No 468
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=3.4e-14 Score=148.22 Aligned_cols=154 Identities=25% Similarity=0.290 Sum_probs=122.7
Q ss_pred cCCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee-CCeeEEEecCCCCccccCchhHHHHHHHH
Q 007334 118 NLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL-GDLRFKVLDSAGLETEATSGSILDRTAGM 196 (607)
Q Consensus 118 ~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~~~~ 196 (607)
...|.|.|+|+...|||||+.+|-+...+-. ...| .|..+..-.+.. +|..+.+.||||+. .|..+
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~-E~GG--ITQhIGAF~V~~p~G~~iTFLDTPGHa----------AF~aM 217 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAG-EAGG--ITQHIGAFTVTLPSGKSITFLDTPGHA----------AFSAM 217 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehh-hcCC--ccceeceEEEecCCCCEEEEecCCcHH----------HHHHH
Confidence 3469999999999999999999987765432 2334 787776555544 78899999999998 56666
Q ss_pred HHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCC--------C
Q 007334 197 TANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFG--------D 268 (607)
Q Consensus 197 ~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~--------~ 268 (607)
...-..-+|++++|+.+.+++.++..+.++..+.. +.|+|+.+||||..... .+....++...|.. .
T Consensus 218 RaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A--~VpiVvAinKiDkp~a~---pekv~~eL~~~gi~~E~~GGdVQ 292 (683)
T KOG1145|consen 218 RARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSA--NVPIVVAINKIDKPGAN---PEKVKRELLSQGIVVEDLGGDVQ 292 (683)
T ss_pred HhccCccccEEEEEEEccCCccHhHHHHHHHHHhc--CCCEEEEEeccCCCCCC---HHHHHHHHHHcCccHHHcCCcee
Confidence 66677889999999999999999998888888887 89999999999977543 34444454444431 5
Q ss_pred cEEeecCCCCChHHHHHHhcc
Q 007334 269 PIAISAETGLGMTELYEALRP 289 (607)
Q Consensus 269 ~i~iSA~~g~gi~eL~~~i~~ 289 (607)
++++||++|+|++.|.+++.-
T Consensus 293 vipiSAl~g~nl~~L~eaill 313 (683)
T KOG1145|consen 293 VIPISALTGENLDLLEEAILL 313 (683)
T ss_pred EEEeecccCCChHHHHHHHHH
Confidence 699999999999999998864
No 469
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=9.5e-16 Score=134.89 Aligned_cols=145 Identities=22% Similarity=0.237 Sum_probs=102.6
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEc---------C--eEEEEEecCCCcccccccCcch
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQ---------G--RTVYLVDTAGWLQREKEKGPAS 393 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~---------~--~~~~liDTpG~~~~~~~~~~~~ 393 (607)
+|...+|.+||||||++.+++.. .+...-+..+..|.....+.|+ + ..++||||||+.+++
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~-~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFR------- 81 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDG-KFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFR------- 81 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCC-cccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHH-------
Confidence 57788899999999999998854 3433334445556655555542 1 246799999975553
Q ss_pred hHHHHHHHHHhhccEEEEEeccchh---------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHH
Q 007334 394 LSVMQSRKNLMRAHVVALVLDAEEV---------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQ 458 (607)
Q Consensus 394 ~~~~~~~~~i~~ad~~llViD~~~~---------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 458 (607)
..+...++.|-++++++|.+.. .+..++.-+|+++||+||.+.+ .+..+..
T Consensus 82 ---SLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R-----------~Vs~~qa 147 (219)
T KOG0081|consen 82 ---SLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQR-----------VVSEDQA 147 (219)
T ss_pred ---HHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhh-----------hhhHHHH
Confidence 2344677889999999999875 2233566799999999997653 2233333
Q ss_pred hhCCCCCCCCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 459 TVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 459 ~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
..++...++|+|++||-+|.||.+..+.+...+
T Consensus 148 ~~La~kyglPYfETSA~tg~Nv~kave~Lldlv 180 (219)
T KOG0081|consen 148 AALADKYGLPYFETSACTGTNVEKAVELLLDLV 180 (219)
T ss_pred HHHHHHhCCCeeeeccccCcCHHHHHHHHHHHH
Confidence 334445689999999999999999888776654
No 470
>PRK12739 elongation factor G; Reviewed
Probab=99.58 E-value=1.6e-14 Score=164.63 Aligned_cols=106 Identities=25% Similarity=0.313 Sum_probs=85.1
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCce-----eec------------CCCCceeeeEEEEEEEcCeEEEEEecCCCcccc
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRV-----LVG------------PEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQRE 386 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~-----~~~------------~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~ 386 (607)
..+|+|+|++|+|||||+++|+..... .+. ...|+|.+.....+.|++.++.+|||||+.++.
T Consensus 8 irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f~ 87 (691)
T PRK12739 8 TRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDFT 87 (691)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHHH
Confidence 467999999999999999999753211 122 256899999999999999999999999975431
Q ss_pred cccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCC
Q 007334 387 KEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSG 439 (607)
Q Consensus 387 ~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~ 439 (607)
..+..++..+|++|+|+|+.++ .....++|+|+++||||+...
T Consensus 88 ----------~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 88 ----------IEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGA 140 (691)
T ss_pred ----------HHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCC
Confidence 2466788899999999999876 233568999999999999854
No 471
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=1.2e-14 Score=151.57 Aligned_cols=148 Identities=26% Similarity=0.359 Sum_probs=114.5
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCc--------------eeecCCCCceeeeEEEEEEEcC---eEEEEEecCCCcccc
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDR--------------VLVGPEAGLTRDSVRVHFEYQG---RTVYLVDTAGWLQRE 386 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~--------------~~~~~~~gtT~~~~~~~~~~~~---~~~~liDTpG~~~~~ 386 (607)
-..++||-+-..|||||..+|+.... ..+...-|+|.......+.|.+ ..+.+|||||+.++.
T Consensus 60 iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs 139 (650)
T KOG0462|consen 60 IRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFS 139 (650)
T ss_pred ccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccccc
Confidence 35799999999999999999984322 1355677999998888888766 677899999999885
Q ss_pred cccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHH
Q 007334 387 KEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQE 456 (607)
Q Consensus 387 ~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 456 (607)
.+ ..+.+..||++|||+||.++ .+++.+..+|.|+||+|+...+. +.+..+
T Consensus 140 ~E----------VsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adp---------e~V~~q 200 (650)
T KOG0462|consen 140 GE----------VSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADP---------ERVENQ 200 (650)
T ss_pred ce----------ehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCCH---------HHHHHH
Confidence 22 12455669999999999997 56678999999999999987642 222233
Q ss_pred HHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 457 IQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 457 ~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+.+.|. ....+++.+|||+|.|+.+++++|++.+
T Consensus 201 ~~~lF~-~~~~~~i~vSAK~G~~v~~lL~AII~rV 234 (650)
T KOG0462|consen 201 LFELFD-IPPAEVIYVSAKTGLNVEELLEAIIRRV 234 (650)
T ss_pred HHHHhc-CCccceEEEEeccCccHHHHHHHHHhhC
Confidence 444443 2345899999999999999999999854
No 472
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.58 E-value=1.7e-14 Score=141.09 Aligned_cols=145 Identities=27% Similarity=0.337 Sum_probs=92.5
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecC---------------CCCceeeeEEEEEEEc----------CeEEEEEecC
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGP---------------EAGLTRDSVRVHFEYQ----------GRTVYLVDTA 380 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~---------------~~gtT~~~~~~~~~~~----------~~~~~liDTp 380 (607)
.|+++|+.++|||||+++|+......... ..|+|.+.....+.+. +..+.|||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 58999999999999999998654322111 1244444433333343 5678899999
Q ss_pred CCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCC------cCchH
Q 007334 381 GWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSG------RQNSA 444 (607)
Q Consensus 381 G~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~------~~~~~ 444 (607)
|+.++. ..+..+++.+|++++|+|++++ .....++|+|+|+||+|+... .+...
T Consensus 82 G~~~f~----------~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~~~e~~~~~~~~~~ 151 (222)
T cd01885 82 GHVDFS----------SEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRLILELKLSPEEAYQ 151 (222)
T ss_pred CccccH----------HHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcchhhhcCCHHHHHH
Confidence 986542 2456788899999999999886 223467899999999998621 11122
Q ss_pred HHHHHHHhcHHHHHhhCC---------CCCCCC----EEEcccCCCCCH
Q 007334 445 LYKRVKEAVPQEIQTVIP---------QVTGIP----VVFTSALEGRGR 480 (607)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~---------~~~~~~----~v~iSA~~g~gv 480 (607)
.+..+.+.+..-+..... +....| +++.||+.|..+
T Consensus 152 ~~~~ii~~~n~~i~~~~~~~~~~~~~~~~~~~p~~gnv~f~S~~~gw~f 200 (222)
T cd01885 152 RLARIIEQVNAIIGTYADEEFKEKDDEKWYFSPQKGNVAFGSALHGWGF 200 (222)
T ss_pred HHHHHHHHHhHHHHhcccccccccCcCCcEEeeCCCcEEEEecccCEEe
Confidence 223333333332222210 111124 999999999886
No 473
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.58 E-value=2.2e-14 Score=138.68 Aligned_cols=164 Identities=13% Similarity=0.068 Sum_probs=103.2
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCC-C-CceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTP-D-DHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~-~-~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.+|||||||+|+|++.........+ + ..+|........ .....+.+|||||+....... .++.. .
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~l~DtpG~~~~~~~~---~~~l~--~ 75 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPH-PKFPNVTLWDLPGIGSTAFPP---DDYLE--E 75 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeec-CCCCCceEEeCCCCCcccCCH---HHHHH--H
Confidence 47999999999999999999985432111111 1 012322211110 123478999999997432211 12211 1
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcC-------cHHH----HHH----HHHh
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTG-------SLAG----AAA----ESLM 263 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~-------~~~~----~~~----~~~~ 263 (607)
..+..+|++++|.| .+++..+..+.+++++. +.|+++|+||+|+...... ..+. ... .+..
T Consensus 76 ~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~ 151 (197)
T cd04104 76 MKFSEYDFFIIISS--TRFSSNDVKLAKAIQCM--GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQE 151 (197)
T ss_pred hCccCcCEEEEEeC--CCCCHHHHHHHHHHHHh--CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHH
Confidence 23567899888854 45778887888888886 6899999999998642110 0111 111 1111
Q ss_pred --cCCCCcEEeecC--CCCChHHHHHHhccchHHH
Q 007334 264 --LGFGDPIAISAE--TGLGMTELYEALRPSVEDY 294 (607)
Q Consensus 264 --~~~~~~i~iSA~--~g~gi~eL~~~i~~~l~~~ 294 (607)
...++++.+|+. .+.|+..|.+.|...+++.
T Consensus 152 ~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 152 AGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH 186 (197)
T ss_pred cCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence 234577999998 6899999999999888764
No 474
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.57 E-value=2.6e-14 Score=163.06 Aligned_cols=106 Identities=24% Similarity=0.262 Sum_probs=84.3
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCcee-----ecC------------CCCceeeeEEEEEEEcCeEEEEEecCCCcccc
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVL-----VGP------------EAGLTRDSVRVHFEYQGRTVYLVDTAGWLQRE 386 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~-----~~~------------~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~ 386 (607)
-.+|+|+|++|+|||||+|+|++....+ +.+ ..|+|++.....+.+++.++.+|||||+.++.
T Consensus 10 irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~ 89 (689)
T TIGR00484 10 FRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFT 89 (689)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchh
Confidence 3589999999999999999997533221 111 46899999999999999999999999986542
Q ss_pred cccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCC
Q 007334 387 KEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSG 439 (607)
Q Consensus 387 ~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~ 439 (607)
..+..++..+|++++|+|++++ .....++|+++++||+|+...
T Consensus 90 ----------~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 90 ----------VEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGA 142 (689)
T ss_pred ----------HHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCC
Confidence 2345778899999999999875 223468999999999999754
No 475
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.57 E-value=2.7e-14 Score=139.77 Aligned_cols=146 Identities=24% Similarity=0.278 Sum_probs=91.2
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceee------------------cCCCCceeeeEEEEEEEc-----CeEEEEEecCCC
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLV------------------GPEAGLTRDSVRVHFEYQ-----GRTVYLVDTAGW 382 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~------------------~~~~gtT~~~~~~~~~~~-----~~~~~liDTpG~ 382 (607)
+|+++|++++|||||+++|++...... ....|+|.+.....+.+. ...+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 589999999999999999986532221 112344544443444333 357889999997
Q ss_pred cccccccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCc------CchHHH
Q 007334 383 LQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGR------QNSALY 446 (607)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~------~~~~~~ 446 (607)
.++. ..+..++..+|++++|+|++++ .....++|+++|+||+|+...+ +....+
T Consensus 82 ~~f~----------~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~l~~~~~~~~l 151 (213)
T cd04167 82 VNFM----------DEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRLILELKLPPNDAYFKL 151 (213)
T ss_pred cchH----------HHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCcccccCCHHHHHHHH
Confidence 5441 2345677889999999999765 1223579999999999986321 111223
Q ss_pred HHHHHhcHHHHHhhCCC--CCCC----CEEEcccCCCCCHH
Q 007334 447 KRVKEAVPQEIQTVIPQ--VTGI----PVVFTSALEGRGRI 481 (607)
Q Consensus 447 ~~~~~~~~~~~~~~~~~--~~~~----~~v~iSA~~g~gv~ 481 (607)
..+.+.+...+...-.. .... .+++.||+.|.++.
T Consensus 152 ~~~i~~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~ 192 (213)
T cd04167 152 RHIIDEVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFT 192 (213)
T ss_pred HHHHHHHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEe
Confidence 33333333333222110 0123 48899999998874
No 476
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.57 E-value=6.1e-14 Score=141.44 Aligned_cols=118 Identities=22% Similarity=0.232 Sum_probs=86.8
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeee-----c----------cCCC----CceeeeeEEEEeeeCCeeEEEecCCCC
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALV-----Y----------NTPD----DHVTRDIREGLAKLGDLRFKVLDSAGL 180 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v-----~----------~~~~----~~~T~~~~~~~~~~~~~~~~liDTpG~ 180 (607)
..+|+|+|++|+|||||+++|+....++. . +... ...+.......+.+.+.++.+|||||+
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~ 81 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGH 81 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCc
Confidence 36799999999999999999985432211 1 0000 012223444567788999999999998
Q ss_pred ccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccC
Q 007334 181 ETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHN 249 (607)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~ 249 (607)
. ++...+..++..+|++++|+|++.+.......+.+.+... ++|+++++||+|+...
T Consensus 82 ~----------df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~--~~P~iivvNK~D~~~a 138 (267)
T cd04169 82 E----------DFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLR--GIPIITFINKLDREGR 138 (267)
T ss_pred h----------HHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhc--CCCEEEEEECCccCCC
Confidence 7 4555667788999999999999988776665566665554 7899999999998654
No 477
>PRK00007 elongation factor G; Reviewed
Probab=99.57 E-value=2.8e-14 Score=162.56 Aligned_cols=106 Identities=22% Similarity=0.230 Sum_probs=84.8
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCc---e--eec------------CCCCceeeeEEEEEEEcCeEEEEEecCCCcccc
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDR---V--LVG------------PEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQRE 386 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~---~--~~~------------~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~ 386 (607)
-.+|+|+|++|+|||||+|+|+.... . .+. ...|+|++.....+.|.+..+.|+||||+.++.
T Consensus 10 Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f~ 89 (693)
T PRK00007 10 YRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDFT 89 (693)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHHH
Confidence 35899999999999999999973211 1 122 366899999989999999999999999975431
Q ss_pred cccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCC
Q 007334 387 KEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSG 439 (607)
Q Consensus 387 ~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~ 439 (607)
..+..++..+|++|+|+|+.++ .....++|+|+++||||+.+.
T Consensus 90 ----------~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~ 142 (693)
T PRK00007 90 ----------IEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGA 142 (693)
T ss_pred ----------HHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCC
Confidence 2356788889999999999876 344578999999999998753
No 478
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.57 E-value=1.5e-14 Score=131.46 Aligned_cols=139 Identities=25% Similarity=0.255 Sum_probs=93.4
Q ss_pred EEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEE--cCeEEEEEecCCCcccccccCcchhHHHHHHHHHhhc
Q 007334 329 IVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEY--QGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRA 406 (607)
Q Consensus 329 ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~a 406 (607)
++|.+|+|||||+|++++.... ......+..+........ .+..+.+|||||+.... ......+..+
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~----------~~~~~~~~~~ 69 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFV-PEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFR----------SLRRLYYRGA 69 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcC-CcccccchhheeeEEEEECCEEEEEEEEecCChHHHH----------hHHHHHhcCC
Confidence 5799999999999999986532 122222223443333333 35678999999964331 1124567789
Q ss_pred cEEEEEeccchhh---------------HHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEE
Q 007334 407 HVVALVLDAEEVR---------------AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVF 471 (607)
Q Consensus 407 d~~llViD~~~~~---------------~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 471 (607)
|++++|+|++.+. ....++|+++++||+|+.......... ...........++++
T Consensus 70 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~----------~~~~~~~~~~~~~~~ 139 (157)
T cd00882 70 DGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEE----------LAEQLAKELGVPYFE 139 (157)
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHH----------HHHHHHhhcCCcEEE
Confidence 9999999999861 123478999999999997653321110 011112234679999
Q ss_pred cccCCCCCHHHHHHHHH
Q 007334 472 TSALEGRGRIAVMHQVI 488 (607)
Q Consensus 472 iSA~~g~gv~~l~~~i~ 488 (607)
+||.++.|+.++++.+.
T Consensus 140 ~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 140 TSAKTGENVEELFEELA 156 (157)
T ss_pred EecCCCCChHHHHHHHh
Confidence 99999999999998764
No 479
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.57 E-value=3.4e-14 Score=162.11 Aligned_cols=144 Identities=17% Similarity=0.178 Sum_probs=107.0
Q ss_pred cCCCEEEEecCCCCchhHHHHHhhccceee-----ecc------------CCCCceeeeeEEEEeeeCCeeEEEecCCCC
Q 007334 118 NLLPTVMIIGRPNVGKSALFNRLIRRREAL-----VYN------------TPDDHVTRDIREGLAKLGDLRFKVLDSAGL 180 (607)
Q Consensus 118 ~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~-----v~~------------~~~~~~T~~~~~~~~~~~~~~~~liDTpG~ 180 (607)
..+.+|+|+|++|+|||||+|+|+.....+ +.+ ..+ +|.+.....+.+++.++.+|||||+
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rg--iti~~~~~~~~~~~~~i~liDTPG~ 85 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERG--ITITSAATTVFWKGHRINIIDTPGH 85 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcC--CCEecceEEEEECCeEEEEEECCCC
Confidence 346799999999999999999997432211 111 233 7888888889999999999999999
Q ss_pred ccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHH-
Q 007334 181 ETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAA- 259 (607)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~- 259 (607)
. ++...+..++..+|++++|+|+.++...++..+..++... ++|+++|+||+|+.... ......
T Consensus 86 ~----------~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~--~~p~ivviNK~D~~~~~---~~~~~~~ 150 (689)
T TIGR00484 86 V----------DFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRY--EVPRIAFVNKMDKTGAN---FLRVVNQ 150 (689)
T ss_pred c----------chhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHc--CCCEEEEEECCCCCCCC---HHHHHHH
Confidence 7 3444566788999999999999999888887777777766 78999999999988643 122221
Q ss_pred HHHhcCCC---CcEEeecCCCC
Q 007334 260 ESLMLGFG---DPIAISAETGL 278 (607)
Q Consensus 260 ~~~~~~~~---~~i~iSA~~g~ 278 (607)
....++.. ..+++||.++.
T Consensus 151 i~~~l~~~~~~~~ipis~~~~~ 172 (689)
T TIGR00484 151 IKQRLGANAVPIQLPIGAEDNF 172 (689)
T ss_pred HHHHhCCCceeEEeccccCCCc
Confidence 22233432 25788887763
No 480
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.56 E-value=4.4e-14 Score=143.33 Aligned_cols=104 Identities=28% Similarity=0.406 Sum_probs=76.5
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCcee-----ec------C------CCCceeeeEEEEEEEcCeEEEEEecCCCcccccc
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVL-----VG------P------EAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKE 388 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~-----~~------~------~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~ 388 (607)
+|+++|++|+|||||+|+|++..... +. + ..+.|.......+.+++..+.+|||||+.++.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~-- 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFV-- 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHH--
Confidence 48999999999999999998542211 10 0 11444455556778889999999999964331
Q ss_pred cCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCC
Q 007334 389 KGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSG 439 (607)
Q Consensus 389 ~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~ 439 (607)
..+..++..+|++++|+|++.+ .....++|+++++||+|+...
T Consensus 79 --------~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 79 --------GETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERA 131 (268)
T ss_pred --------HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCC
Confidence 2355778899999999999875 223468999999999998643
No 481
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=3.6e-14 Score=149.71 Aligned_cols=155 Identities=21% Similarity=0.287 Sum_probs=113.9
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEc---CeEEEEEecCCCcccccccCcchhHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQ---GRTVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
++-|+++|+-..|||||+..+-+.+ .....-.|+|.+....++.++ ...+.++||||+ +.|+.++++
T Consensus 5 ~PvVtimGHVDHGKTtLLD~IR~t~-Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGH---------eAFt~mRaR 74 (509)
T COG0532 5 PPVVTIMGHVDHGKTTLLDKIRKTN-VAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGH---------EAFTAMRAR 74 (509)
T ss_pred CCEEEEeCcccCCccchhhhHhcCc-cccccCCceeeEeeeEEEEeccCCCceEEEEcCCcH---------HHHHHHHhc
Confidence 4569999999999999999998664 555667789999988888874 468999999994 456667765
Q ss_pred HHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEE
Q 007334 401 KNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVV 470 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 470 (607)
.+ .-+|+++||+|++++ .+...+.|+|+++||+|.++........+.....+..+ .| .....++
T Consensus 75 Ga-~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E---~~--gg~v~~V 148 (509)
T COG0532 75 GA-SVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEYGLVPE---EW--GGDVIFV 148 (509)
T ss_pred CC-ccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHcCCCHh---hc--CCceEEE
Confidence 43 458999999999997 33457999999999999986532211111111111111 11 1236899
Q ss_pred EcccCCCCCHHHHHHHHHHHHHHH
Q 007334 471 FTSALEGRGRIAVMHQVIDTYQKW 494 (607)
Q Consensus 471 ~iSA~~g~gv~~l~~~i~~~~~~~ 494 (607)
++||++|+|+++|++.+.-..+.+
T Consensus 149 pvSA~tg~Gi~eLL~~ill~aev~ 172 (509)
T COG0532 149 PVSAKTGEGIDELLELILLLAEVL 172 (509)
T ss_pred EeeccCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999887665544
No 482
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.56 E-value=1.1e-13 Score=136.01 Aligned_cols=161 Identities=19% Similarity=0.221 Sum_probs=108.8
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC-CeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG-DLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
.+|+++|.+|||||||+++|.+..+........ .+.+......... ..++.+|||+|++ ++......
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~--~~~~~~~~~~~~~~~~~~~~~Dt~gq~----------~~~~~~~~ 73 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTI--GNLDPAKTIEPYRRNIKLQLWDTAGQE----------EYRSLRPE 73 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCce--eeeeEEEEEEeCCCEEEEEeecCCCHH----------HHHHHHHH
Confidence 689999999999999999999877543222111 1222222111111 4679999999999 67777888
Q ss_pred HhhccCEEEEEEecCCCCCHhH--HHHHHHHHhhC-CCCcEEEEecCCCcccCCc------------CcHHHHHHHHHhc
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLD--LEVGKWLRKHA-PQIKPIVAMNKCESLHNGT------------GSLAGAAAESLML 264 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~--~~~~~~l~~~~-~~~p~ilV~NK~D~~~~~~------------~~~~~~~~~~~~~ 264 (607)
++..++++++|+|........+ ..+...+.... .+.|+++|+||+|+..... .............
T Consensus 74 y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (219)
T COG1100 74 YYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLP 153 (219)
T ss_pred HhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhh
Confidence 9999999999999987433333 33444455544 3689999999999987642 1111111111111
Q ss_pred --CCCCcEEeecC--CCCChHHHHHHhccchHH
Q 007334 265 --GFGDPIAISAE--TGLGMTELYEALRPSVED 293 (607)
Q Consensus 265 --~~~~~i~iSA~--~g~gi~eL~~~i~~~l~~ 293 (607)
....++.+||+ ++.++.+++..+...+..
T Consensus 154 ~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~~ 186 (219)
T COG1100 154 EVANPALLETSAKSLTGPNVNELFKELLRKLLE 186 (219)
T ss_pred hhcccceeEeecccCCCcCHHHHHHHHHHHHHH
Confidence 12237999999 999999999998877754
No 483
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.56 E-value=3.5e-14 Score=137.76 Aligned_cols=168 Identities=15% Similarity=0.163 Sum_probs=116.2
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
..+|.|+|.+|||||||+|+|++.+...+.+.+. .|....+....+.+..+.||||||+++....+ .+......+
T Consensus 39 pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~--~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D---~~~r~~~~d 113 (296)
T COG3596 39 PVNVLLMGATGAGKSSLINALFQGEVKEVSKVGV--GTDITTRLRLSYDGENLVLWDTPGLGDGKDKD---AEHRQLYRD 113 (296)
T ss_pred ceeEEEecCCCCcHHHHHHHHHhccCceeeeccc--CCCchhhHHhhccccceEEecCCCcccchhhh---HHHHHHHHH
Confidence 3467899999999999999999877666665553 33333333344567889999999999543222 145667788
Q ss_pred HhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCC----c-----C-cHHHH-------HHHHH
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNG----T-----G-SLAGA-------AAESL 262 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~----~-----~-~~~~~-------~~~~~ 262 (607)
++...|++++++|+.++.-..+.++..-+.-...++++++|+|.+|..... . . ...+. ...+.
T Consensus 114 ~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~ 193 (296)
T COG3596 114 YLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLF 193 (296)
T ss_pred HhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999876666655544443333468999999999987542 0 0 00110 01111
Q ss_pred hcCCCCcEEeecCCCCChHHHHHHhccchHH
Q 007334 263 MLGFGDPIAISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 263 ~~~~~~~i~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
....+++..|+..++|+++|...+...++.
T Consensus 194 -q~V~pV~~~~~r~~wgl~~l~~ali~~lp~ 223 (296)
T COG3596 194 -QEVKPVVAVSGRLPWGLKELVRALITALPV 223 (296)
T ss_pred -hhcCCeEEeccccCccHHHHHHHHHHhCcc
Confidence 113366777889999999999999987764
No 484
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.55 E-value=5.5e-14 Score=154.17 Aligned_cols=117 Identities=21% Similarity=0.216 Sum_probs=86.8
Q ss_pred CCEEEEecCCCCchhHHHHHhhcccee-----eec----------cCCC----CceeeeeEEEEeeeCCeeEEEecCCCC
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREA-----LVY----------NTPD----DHVTRDIREGLAKLGDLRFKVLDSAGL 180 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~-----~v~----------~~~~----~~~T~~~~~~~~~~~~~~~~liDTpG~ 180 (607)
..+|+|+|++|+|||||.++|+....+ .+. +... ...|.......+.+++..+++|||||+
T Consensus 10 ~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~ 89 (526)
T PRK00741 10 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGH 89 (526)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCc
Confidence 578999999999999999999732111 111 0000 012333344556778999999999999
Q ss_pred ccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCccc
Q 007334 181 ETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLH 248 (607)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~ 248 (607)
. ++...+..++..+|++|+|+|++++.......+.+..+.. ++|+++++||+|+..
T Consensus 90 ~----------df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~--~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 90 E----------DFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLR--DTPIFTFINKLDRDG 145 (526)
T ss_pred h----------hhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhc--CCCEEEEEECCcccc
Confidence 7 5556677788999999999999998877766666666655 789999999999764
No 485
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.55 E-value=2.5e-14 Score=153.23 Aligned_cols=153 Identities=23% Similarity=0.236 Sum_probs=97.2
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCC--ceeecCCCCceeeeEEEEEEE------------------c--------CeEE
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQED--RVLVGPEAGLTRDSVRVHFEY------------------Q--------GRTV 374 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~--~~~~~~~~gtT~~~~~~~~~~------------------~--------~~~~ 374 (607)
..++|+++|+.++|||||+.+|++.. ........|+|.+.....+.+ + ...+
T Consensus 8 ~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 87 (411)
T PRK04000 8 PEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRV 87 (411)
T ss_pred CcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEE
Confidence 35899999999999999999997631 111122346666543221111 0 2578
Q ss_pred EEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh-----------hHHhcC-CcEEEEEeCccCCCCcCc
Q 007334 375 YLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV-----------RAVEEG-RGLVVIVNKMDLLSGRQN 442 (607)
Q Consensus 375 ~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~-----------~~~~~~-~p~ivv~NK~Dl~~~~~~ 442 (607)
.||||||+.++ . ..+...+..+|++++|+|++++ .....+ .|+++|+||+|+.+....
T Consensus 88 ~liDtPG~~~f---------~-~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~~~~ 157 (411)
T PRK04000 88 SFVDAPGHETL---------M-ATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKERA 157 (411)
T ss_pred EEEECCCHHHH---------H-HHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccchhH
Confidence 99999996433 1 2334555678999999999853 111234 469999999999864322
Q ss_pred hHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 443 SALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
...++.+.. .+... ...+.+++++||++|.|+++|++.|...+
T Consensus 158 ~~~~~~i~~----~l~~~--~~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 158 LENYEQIKE----FVKGT--VAENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred HHHHHHHHH----Hhccc--cCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 111222211 11110 12357899999999999999998887643
No 486
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.55 E-value=7.8e-14 Score=134.73 Aligned_cols=158 Identities=21% Similarity=0.228 Sum_probs=97.9
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEc-----C--eEEEEEecCCCcccccccCcchhHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQ-----G--RTVYLVDTAGWLQREKEKGPASLSVM 397 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~-----~--~~~~liDTpG~~~~~~~~~~~~~~~~ 397 (607)
+||+++|.++||||||++++++.. +.....+.+..+.....+.++ + ..+.||||+|..+. ...
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~-f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~---------~~l 70 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQ-VLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESV---------KST 70 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC-CCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhH---------HHH
Confidence 489999999999999999999764 222223333323333334442 2 35779999995332 222
Q ss_pred HHHHHHhhccEEEEEeccchh-----------hHH----------------------hcCCcEEEEEeCccCCCCcCchH
Q 007334 398 QSRKNLMRAHVVALVLDAEEV-----------RAV----------------------EEGRGLVVIVNKMDLLSGRQNSA 444 (607)
Q Consensus 398 ~~~~~i~~ad~~llViD~~~~-----------~~~----------------------~~~~p~ivv~NK~Dl~~~~~~~~ 444 (607)
...+++++|++|+|+|.++. ... ..+.|+|||+||+|+.+.+....
T Consensus 71 -~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~ 149 (202)
T cd04102 71 -RAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSG 149 (202)
T ss_pred -HHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccch
Confidence 23578899999999999886 111 12579999999999976432111
Q ss_pred HHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 007334 445 LYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWLRKVMGR 513 (607)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~ 513 (607)
... ..-...++...++|.+++++.....+.. ..-...+|.++++.++++
T Consensus 150 ~~~-------~~~~~~ia~~~~~~~i~~~c~~~~~~~~-------------~~~~~~~~~~~~~~~~~~ 198 (202)
T cd04102 150 NLV-------LTARGFVAEQGNAEEINLNCTNGRLLAA-------------GSSDAVKLSRFFDKVIEK 198 (202)
T ss_pred HHH-------hhHhhhHHHhcCCceEEEecCCcccccC-------------CCccHHHHHHHHHHHHHh
Confidence 100 0011222344578899999887665421 122345667777777665
No 487
>PLN00023 GTP-binding protein; Provisional
Probab=99.55 E-value=7.3e-14 Score=141.52 Aligned_cols=135 Identities=17% Similarity=0.174 Sum_probs=91.6
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC---------------CeeEEEecCCCCccc
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG---------------DLRFKVLDSAGLETE 183 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~---------------~~~~~liDTpG~~~~ 183 (607)
...+|+|+|..|||||||++++++..+... ..+. +..+.....+.++ ...+.||||+|++
T Consensus 20 ~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~-~~pT--IG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqE-- 94 (334)
T PLN00023 20 GQVRVLVVGDSGVGKSSLVHLIVKGSSIAR-PPQT--IGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHE-- 94 (334)
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCCcccc-cCCc--eeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCCh--
Confidence 357899999999999999999998754211 1121 2233333333332 3569999999998
Q ss_pred cCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHH-HHHHHHhhC-------------CCCcEEEEecCCCcccC
Q 007334 184 ATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKHA-------------PQIKPIVAMNKCESLHN 249 (607)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~~-------------~~~p~ilV~NK~D~~~~ 249 (607)
++......++..+|++|+|+|+++..+..+.. +++.+.... .+.|+++|+||+|+...
T Consensus 95 --------rfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 95 --------RYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred --------hhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 56667778899999999999999876665532 333343321 14799999999999764
Q ss_pred Cc------CcHHHHHHHHHhcCC
Q 007334 250 GT------GSLAGAAAESLMLGF 266 (607)
Q Consensus 250 ~~------~~~~~~~~~~~~~~~ 266 (607)
+. +..+....++...|+
T Consensus 167 ~~~r~~s~~~~e~a~~~A~~~g~ 189 (334)
T PLN00023 167 EGTRGSSGNLVDAARQWVEKQGL 189 (334)
T ss_pred ccccccccccHHHHHHHHHHcCC
Confidence 21 134555566666664
No 488
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.54 E-value=3.7e-14 Score=146.65 Aligned_cols=89 Identities=28% Similarity=0.244 Sum_probs=72.7
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe-----------------EEEEEecCCCcccc
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR-----------------TVYLVDTAGWLQRE 386 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~-----------------~~~liDTpG~~~~~ 386 (607)
.++|++||.||||||||+|+|++.. ..++++|+||+++..+.+.+.+. ++.++||||+.+..
T Consensus 2 ~~~vgIVG~PNvGKSTLfnaLt~~~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a 80 (364)
T PRK09601 2 GLKCGIVGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA 80 (364)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC-CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence 3689999999999999999999886 78999999999999888777552 58999999997642
Q ss_pred cccCcchhHHHHHHHHHhhccEEEEEeccc
Q 007334 387 KEKGPASLSVMQSRKNLMRAHVVALVLDAE 416 (607)
Q Consensus 387 ~~~~~~~~~~~~~~~~i~~ad~~llViD~~ 416 (607)
.. + .-...+.+..++.||++++|+|+.
T Consensus 81 ~~-g--~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 81 SK-G--EGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred Ch-H--HHHHHHHHHHHHhCCEEEEEEeCC
Confidence 11 1 112356778899999999999984
No 489
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.54 E-value=8.8e-14 Score=134.44 Aligned_cols=163 Identities=15% Similarity=0.202 Sum_probs=97.6
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCcee-ecCCCC---ceeeeEEEEEEE-cCeEEEEEecCCCcccccccCcchhHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVL-VGPEAG---LTRDSVRVHFEY-QGRTVYLVDTAGWLQREKEKGPASLSVMQ 398 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~-~~~~~g---tT~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~~~~ 398 (607)
+++|+++|++|||||||+|+|+|..... .....+ +|+... .+.. ....+.+|||||+.+... ..+.+ ..
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~l~l~DtpG~~~~~~--~~~~~--l~ 74 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRT--PYPHPKFPNVTLWDLPGIGSTAF--PPDDY--LE 74 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCce--eeecCCCCCceEEeCCCCCcccC--CHHHH--HH
Confidence 4689999999999999999999854221 111112 233221 1111 134688999999865421 11111 11
Q ss_pred HHHHHhhccEEEEEeccchh--------hHHhcCCcEEEEEeCccCCCCcC---------chHHHHHHHHhcHHHHHhhC
Q 007334 399 SRKNLMRAHVVALVLDAEEV--------RAVEEGRGLVVIVNKMDLLSGRQ---------NSALYKRVKEAVPQEIQTVI 461 (607)
Q Consensus 399 ~~~~i~~ad~~llViD~~~~--------~~~~~~~p~ivv~NK~Dl~~~~~---------~~~~~~~~~~~~~~~~~~~~ 461 (607)
...+..+|++++|.|..-. .....++|+++|+||||+..... ..+..+.+.+.+...+...
T Consensus 75 -~~~~~~~d~~l~v~~~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~- 152 (197)
T cd04104 75 -EMKFSEYDFFIIISSTRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEA- 152 (197)
T ss_pred -HhCccCcCEEEEEeCCCCCHHHHHHHHHHHHhCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHc-
Confidence 1224578999998665311 22334789999999999864211 1233344443333332211
Q ss_pred CCCCCCCEEEcccC--CCCCHHHHHHHHHHHHHHHh
Q 007334 462 PQVTGIPVVFTSAL--EGRGRIAVMHQVIDTYQKWC 495 (607)
Q Consensus 462 ~~~~~~~~v~iSA~--~g~gv~~l~~~i~~~~~~~~ 495 (607)
.....+|+.+|+. .+.|+..+.+.+...+.+..
T Consensus 153 -~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~ 187 (197)
T cd04104 153 -GVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHK 187 (197)
T ss_pred -CCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHH
Confidence 1234589999998 68999999888887765433
No 490
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.54 E-value=5e-14 Score=122.73 Aligned_cols=151 Identities=18% Similarity=0.139 Sum_probs=114.8
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANV 200 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 200 (607)
..+.+||..|+|||||+|.+...... .+ -+ -|+......+.-+...+.+||.||+- ++..++..|
T Consensus 21 mel~lvGLq~sGKtt~Vn~ia~g~~~--ed-mi--ptvGfnmrk~tkgnvtiklwD~gGq~----------rfrsmWery 85 (186)
T KOG0075|consen 21 MELSLVGLQNSGKTTLVNVIARGQYL--ED-MI--PTVGFNMRKVTKGNVTIKLWDLGGQP----------RFRSMWERY 85 (186)
T ss_pred eeEEEEeeccCCcceEEEEEeeccch--hh-hc--ccccceeEEeccCceEEEEEecCCCc----------cHHHHHHHH
Confidence 57999999999999999998765432 22 22 46667777777788999999999998 788889999
Q ss_pred hhccCEEEEEEecCCCC--CHhHHHHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCC-------CcE
Q 007334 201 LAKTQFAIFMIDVRSGL--HPLDLEVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFG-------DPI 270 (607)
Q Consensus 201 ~~~ad~vl~VvD~s~~~--~~~~~~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~-------~~i 270 (607)
++..+++++|+|++++. +....++.+.|.+. ..++|+++.+||.|+...-. ........|+. ..+
T Consensus 86 cR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~-----~~~li~rmgL~sitdREvcC~ 160 (186)
T KOG0075|consen 86 CRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALS-----KIALIERMGLSSITDREVCCF 160 (186)
T ss_pred hhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccccc-----HHHHHHHhCccccccceEEEE
Confidence 99999999999999853 23334566666543 44799999999999886522 12223334432 248
Q ss_pred EeecCCCCChHHHHHHhccch
Q 007334 271 AISAETGLGMTELYEALRPSV 291 (607)
Q Consensus 271 ~iSA~~g~gi~eL~~~i~~~l 291 (607)
.+||+...+|+-+.++|.++.
T Consensus 161 siScke~~Nid~~~~Wli~hs 181 (186)
T KOG0075|consen 161 SISCKEKVNIDITLDWLIEHS 181 (186)
T ss_pred EEEEcCCccHHHHHHHHHHHh
Confidence 999999999999999998754
No 491
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.53 E-value=6.7e-14 Score=150.97 Aligned_cols=150 Identities=23% Similarity=0.264 Sum_probs=103.2
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCce------------------------------eecCCCCceeeeEEEEEEEcCe
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRV------------------------------LVGPEAGLTRDSVRVHFEYQGR 372 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~------------------------------~~~~~~gtT~~~~~~~~~~~~~ 372 (607)
+.+.|+++|+.++|||||+.+|+..... .....-|+|.+.....+++++.
T Consensus 6 ~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~ 85 (447)
T PLN00043 6 VHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKY 85 (447)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCE
Confidence 3478999999999999999999742110 1112347888888778888999
Q ss_pred EEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh-----------------hHHhcCCc-EEEEEeCc
Q 007334 373 TVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV-----------------RAVEEGRG-LVVIVNKM 434 (607)
Q Consensus 373 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~-----------------~~~~~~~p-~ivv~NK~ 434 (607)
.+.|+||||+.++. ..+..++..||++|+|+|++++ .....++| +|+++||+
T Consensus 86 ~i~liDtPGh~df~----------~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKm 155 (447)
T PLN00043 86 YCTVIDAPGHRDFI----------KNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKM 155 (447)
T ss_pred EEEEEECCCHHHHH----------HHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcc
Confidence 99999999975542 2344567789999999999863 11135775 78899999
Q ss_pred cCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHH
Q 007334 435 DLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIA 482 (607)
Q Consensus 435 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~ 482 (607)
|+.+.......++.+.+.+...+.+.-.....++++++||++|.|+.+
T Consensus 156 D~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 156 DATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred cCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 987322222334444444443333221122357899999999999854
No 492
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=6e-14 Score=143.30 Aligned_cols=147 Identities=27% Similarity=0.360 Sum_probs=110.7
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCc------------------------------eeecCCCCceeeeEEEEEEEcCeE
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDR------------------------------VLVGPEAGLTRDSVRVHFEYQGRT 373 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~------------------------------~~~~~~~gtT~~~~~~~~~~~~~~ 373 (607)
-++++++|++++|||||+-+|+.+-. .......|.|.|.....++.+...
T Consensus 7 h~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~~ 86 (428)
T COG5256 7 HLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKYN 86 (428)
T ss_pred ceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCce
Confidence 47899999999999999999974310 113345699999998899988889
Q ss_pred EEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh--------------h---HHhcC-CcEEEEEeCcc
Q 007334 374 VYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV--------------R---AVEEG-RGLVVIVNKMD 435 (607)
Q Consensus 374 ~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~--------------~---~~~~~-~p~ivv~NK~D 435 (607)
+.|+|+||++++- ..+...+..||++|||+|+..+ . +.-.| ..+|+++||+|
T Consensus 87 ~tIiDaPGHrdFv----------knmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD 156 (428)
T COG5256 87 FTIIDAPGHRDFV----------KNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMD 156 (428)
T ss_pred EEEeeCCchHHHH----------HHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEccc
Confidence 9999999987762 2334455679999999999876 0 11123 46899999999
Q ss_pred CCCCcCchHHHHHHHHhcHHHHHhhCCCCC-CCCEEEcccCCCCCHHHH
Q 007334 436 LLSGRQNSALYKRVKEAVPQEIQTVIPQVT-GIPVVFTSALEGRGRIAV 483 (607)
Q Consensus 436 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~iSA~~g~gv~~l 483 (607)
+++- ..+.|+++...+.. +.+.+.... .+++++|||..|.|+.+.
T Consensus 157 ~v~w--de~rf~ei~~~v~~-l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 157 LVSW--DEERFEEIVSEVSK-LLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred cccc--CHHHHHHHHHHHHH-HHHHcCCCccCCeEEecccccCCccccc
Confidence 9873 35667777777766 555554433 588999999999998654
No 493
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.53 E-value=6.3e-14 Score=122.08 Aligned_cols=146 Identities=21% Similarity=0.171 Sum_probs=103.9
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHh
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLM 404 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~ 404 (607)
+.+.++|-.|+|||||+|.+...+.. ...+-|+-.....++.+...+.+||.||+.+++ .+..++.+
T Consensus 21 mel~lvGLq~sGKtt~Vn~ia~g~~~---edmiptvGfnmrk~tkgnvtiklwD~gGq~rfr----------smWerycR 87 (186)
T KOG0075|consen 21 MELSLVGLQNSGKTTLVNVIARGQYL---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR----------SMWERYCR 87 (186)
T ss_pred eeEEEEeeccCCcceEEEEEeeccch---hhhcccccceeEEeccCceEEEEEecCCCccHH----------HHHHHHhh
Confidence 67999999999999999987643321 222333444444556677899999999987764 34567889
Q ss_pred hccEEEEEeccchh---------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCE
Q 007334 405 RAHVVALVLDAEEV---------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPV 469 (607)
Q Consensus 405 ~ad~~llViD~~~~---------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (607)
+++++++|+|+.++ .....++|+++++||.|+.+.-+...+.++ +.-..-....+.+
T Consensus 88 ~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~r--------mgL~sitdREvcC 159 (186)
T KOG0075|consen 88 GVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIER--------MGLSSITDREVCC 159 (186)
T ss_pred cCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHH--------hCccccccceEEE
Confidence 99999999999986 122358999999999999876432222222 1111111224678
Q ss_pred EEcccCCCCCHHHHHHHHHHHH
Q 007334 470 VFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 470 v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+.+|+++..|++-+.+++++.-
T Consensus 160 ~siScke~~Nid~~~~Wli~hs 181 (186)
T KOG0075|consen 160 FSISCKEKVNIDITLDWLIEHS 181 (186)
T ss_pred EEEEEcCCccHHHHHHHHHHHh
Confidence 9999999999999999888754
No 494
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.53 E-value=1.7e-14 Score=127.38 Aligned_cols=112 Identities=21% Similarity=0.257 Sum_probs=75.4
Q ss_pred EEEEecCCCCchhHHHHHhhcccee---eeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREA---LVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~---~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
+|+++|.+|||||||+++|++.... ......+ .+..............+.+||++|... +.....
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~g~~~----------~~~~~~ 68 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSE--ITIGVDVIVVDGDRQSLQFWDFGGQEE----------FYSQHQ 68 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTT--SCEEEEEEEETTEEEEEEEEEESSSHC----------HHCTSH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCC--CcEEEEEEEecCCceEEEEEecCccce----------eccccc
Confidence 5899999999999999999987754 1111222 233322333333444589999999972 222222
Q ss_pred HHhhccCEEEEEEecCCCCCHhH-HHHHHHHHhh---CCCCcEEEEecCCC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLD-LEVGKWLRKH---APQIKPIVAMNKCE 245 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~-~~~~~~l~~~---~~~~p~ilV~NK~D 245 (607)
..+..+|++++|+|++++.+... .++..|+... ..+.|+++|+||.|
T Consensus 69 ~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 69 FFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp HHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred chhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 33788999999999998766665 3455666554 45799999999998
No 495
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.53 E-value=1e-13 Score=124.06 Aligned_cols=133 Identities=25% Similarity=0.252 Sum_probs=84.6
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhh
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMR 405 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ 405 (607)
||+++|+.++|||||+++|.+.+.. ..-|.. +.+.+ .+|||||=+- +....+ .........
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~-----~~KTq~-----i~~~~---~~IDTPGEyi----E~~~~y--~aLi~ta~d 63 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIR-----YKKTQA-----IEYYD---NTIDTPGEYI----ENPRFY--HALIVTAQD 63 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCC-----cCccce-----eEecc---cEEECChhhe----eCHHHH--HHHHHHHhh
Confidence 7999999999999999999986421 111211 22222 3599999211 111111 112234457
Q ss_pred ccEEEEEeccchh-------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCC
Q 007334 406 AHVVALVLDAEEV-------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGR 478 (607)
Q Consensus 406 ad~~llViD~~~~-------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~ 478 (607)
||++++|.|+++. ....-++|+|=|+||+|+..... ..+..++.+ . ....-.+|++||.+|+
T Consensus 64 ad~V~ll~dat~~~~~~pP~fa~~f~~pvIGVITK~Dl~~~~~---~i~~a~~~L----~----~aG~~~if~vS~~~~e 132 (143)
T PF10662_consen 64 ADVVLLLQDATEPRSVFPPGFASMFNKPVIGVITKIDLPSDDA---NIERAKKWL----K----NAGVKEIFEVSAVTGE 132 (143)
T ss_pred CCEEEEEecCCCCCccCCchhhcccCCCEEEEEECccCccchh---hHHHHHHHH----H----HcCCCCeEEEECCCCc
Confidence 9999999999986 22234789999999999984321 122221111 1 1122357999999999
Q ss_pred CHHHHHHHHH
Q 007334 479 GRIAVMHQVI 488 (607)
Q Consensus 479 gv~~l~~~i~ 488 (607)
|+++|.+.|.
T Consensus 133 Gi~eL~~~L~ 142 (143)
T PF10662_consen 133 GIEELKDYLE 142 (143)
T ss_pred CHHHHHHHHh
Confidence 9999988763
No 496
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.53 E-value=1.9e-13 Score=136.07 Aligned_cols=130 Identities=17% Similarity=0.251 Sum_probs=94.1
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
...+|+++|.+|||||||+|+|++...+.++...+ +|.........+.+.++.+|||||+.+................
T Consensus 30 ~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~--~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~ 107 (249)
T cd01853 30 FSLTILVLGKTGVGKSSTINSIFGERKAATSAFQS--ETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIK 107 (249)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCC--ceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHH
Confidence 35799999999999999999999988766665554 6777776667778899999999999854211112222333344
Q ss_pred HHhh--ccCEEEEEEecCC-CCCHhHHHHHHHHHhhCC---CCcEEEEecCCCcccCC
Q 007334 199 NVLA--KTQFAIFMIDVRS-GLHPLDLEVGKWLRKHAP---QIKPIVAMNKCESLHNG 250 (607)
Q Consensus 199 ~~~~--~ad~vl~VvD~s~-~~~~~~~~~~~~l~~~~~---~~p~ilV~NK~D~~~~~ 250 (607)
.++. ..|++++|..+.. ..+..+..+++.+.+.+. -.++++|+||+|.....
T Consensus 108 ~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~ 165 (249)
T cd01853 108 RYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPD 165 (249)
T ss_pred HHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCC
Confidence 4554 5788888876653 456777778888877532 25799999999988653
No 497
>PRK13351 elongation factor G; Reviewed
Probab=99.52 E-value=1e-13 Score=158.53 Aligned_cols=119 Identities=17% Similarity=0.245 Sum_probs=91.5
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceee-----------eccCC----CCceeeeeEEEEeeeCCeeEEEecCCCCccc
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREAL-----------VYNTP----DDHVTRDIREGLAKLGDLRFKVLDSAGLETE 183 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~-----------v~~~~----~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~ 183 (607)
...+|+|+|..|+|||||+++|+.....+ +.+.. ....|.......+.+.+..+.+|||||+.
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~-- 84 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHI-- 84 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcH--
Confidence 36799999999999999999998542111 11100 01145555556777889999999999997
Q ss_pred cCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccC
Q 007334 184 ATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHN 249 (607)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~ 249 (607)
++...+..++..+|++++|+|++++.......+...+... ++|+++|+||+|+...
T Consensus 85 --------df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~--~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 85 --------DFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRY--GIPRLIFINKMDRVGA 140 (687)
T ss_pred --------HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc--CCCEEEEEECCCCCCC
Confidence 5666778889999999999999998887776666666665 7899999999998753
No 498
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.52 E-value=1.9e-13 Score=149.90 Aligned_cols=116 Identities=19% Similarity=0.198 Sum_probs=86.6
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceee-----ec----------cCC----CCceeeeeEEEEeeeCCeeEEEecCCCC
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREAL-----VY----------NTP----DDHVTRDIREGLAKLGDLRFKVLDSAGL 180 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~-----v~----------~~~----~~~~T~~~~~~~~~~~~~~~~liDTpG~ 180 (607)
..+|+|||++|+|||||.++|+-....+ +. +.. ....|.......+++.+..+.+|||||+
T Consensus 11 ~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG~ 90 (527)
T TIGR00503 11 RRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPGH 90 (527)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCCh
Confidence 5789999999999999999986321111 11 000 0113344445566778999999999999
Q ss_pred ccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcc
Q 007334 181 ETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESL 247 (607)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~ 247 (607)
. ++...+..++..+|++|+|+|++.+.......+.+.++.. ++|+++++||+|+.
T Consensus 91 ~----------df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~--~~PiivviNKiD~~ 145 (527)
T TIGR00503 91 E----------DFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLR--DTPIFTFMNKLDRD 145 (527)
T ss_pred h----------hHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhc--CCCEEEEEECcccc
Confidence 7 5666677888999999999999998777766666666554 78999999999975
No 499
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.52 E-value=9.8e-14 Score=149.79 Aligned_cols=151 Identities=21% Similarity=0.194 Sum_probs=106.7
Q ss_pred CCEEEEecCCCCchhHHHHHhhcccee------------------------eeccC----CCCceeeeeEEEEeeeCCee
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREA------------------------LVYNT----PDDHVTRDIREGLAKLGDLR 171 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~------------------------~v~~~----~~~~~T~~~~~~~~~~~~~~ 171 (607)
..+|+++|+.++|||||+.+|+..... .+.+. .....|.+.....+.+++..
T Consensus 7 ~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~~ 86 (446)
T PTZ00141 7 HINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYY 86 (446)
T ss_pred eEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCeE
Confidence 358999999999999999999752110 01110 01237888888888888999
Q ss_pred EEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCC-------HhHHHHHHHHHhhCCCCc-EEEEecC
Q 007334 172 FKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLH-------PLDLEVGKWLRKHAPQIK-PIVAMNK 243 (607)
Q Consensus 172 ~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~-------~~~~~~~~~l~~~~~~~p-~ilV~NK 243 (607)
+.|+||||+. ++...+...+..+|++++|+|+..+.. .+..+.+..+... ++| +|+++||
T Consensus 87 i~lIDtPGh~----------~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~--gi~~iiv~vNK 154 (446)
T PTZ00141 87 FTIIDAPGHR----------DFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL--GVKQMIVCINK 154 (446)
T ss_pred EEEEECCChH----------HHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc--CCCeEEEEEEc
Confidence 9999999987 677777888899999999999998863 4555666666665 666 6789999
Q ss_pred CCccc--CCcCcH----HHHHHHHHhcCC----CCcEEeecCCCCChHH
Q 007334 244 CESLH--NGTGSL----AGAAAESLMLGF----GDPIAISAETGLGMTE 282 (607)
Q Consensus 244 ~D~~~--~~~~~~----~~~~~~~~~~~~----~~~i~iSA~~g~gi~e 282 (607)
+|... ...... .+....+...++ .+++++||.+|+|+.+
T Consensus 155 mD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 155 MDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 99532 111111 222233334455 2579999999999964
No 500
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.52 E-value=3.8e-14 Score=145.70 Aligned_cols=163 Identities=18% Similarity=0.249 Sum_probs=117.9
Q ss_pred cCCCEEEEecCCCCchhHHHHHhhccceee--------e------ccCCCCceeeeeEEEEeee-----CCeeEEEecCC
Q 007334 118 NLLPTVMIIGRPNVGKSALFNRLIRRREAL--------V------YNTPDDHVTRDIREGLAKL-----GDLRFKVLDSA 178 (607)
Q Consensus 118 ~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~--------v------~~~~~~~~T~~~~~~~~~~-----~~~~~~liDTp 178 (607)
+.+.+.+||.+-..|||||-.||+...... + ....| .|.-.....+.+ ..+.+.+||||
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERG--ITIKaq~v~l~Yk~~~g~~Y~lnlIDTP 84 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERG--ITIKAQAVRLNYKAKDGETYVLNLIDTP 84 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcC--ceEEeeEEEEEEEeCCCCEEEEEEcCCC
Confidence 446789999999999999999998543211 1 11223 444443333333 34789999999
Q ss_pred CCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHH
Q 007334 179 GLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAA 258 (607)
Q Consensus 179 G~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~ 258 (607)
|+. +|.......+..|.++++|+|++.|+..+.. .+.....-.+..+|-|+||+|+...+.+......
T Consensus 85 GHV----------DFsYEVSRSLAACEGalLvVDAsQGveAQTl--AN~YlAle~~LeIiPViNKIDLP~Adpervk~eI 152 (603)
T COG0481 85 GHV----------DFSYEVSRSLAACEGALLVVDASQGVEAQTL--ANVYLALENNLEIIPVLNKIDLPAADPERVKQEI 152 (603)
T ss_pred Ccc----------ceEEEehhhHhhCCCcEEEEECccchHHHHH--HHHHHHHHcCcEEEEeeecccCCCCCHHHHHHHH
Confidence 998 4444455667889999999999999988873 3333333337899999999999987654444444
Q ss_pred HHHHhcCCCCcEEeecCCCCChHHHHHHhccchHHH
Q 007334 259 AESLMLGFGDPIAISAETGLGMTELYEALRPSVEDY 294 (607)
Q Consensus 259 ~~~~~~~~~~~i~iSA~~g~gi~eL~~~i~~~l~~~ 294 (607)
.....+...+.+.+||++|.|+++++++|.+.++.+
T Consensus 153 e~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P 188 (603)
T COG0481 153 EDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPP 188 (603)
T ss_pred HHHhCCCcchheeEecccCCCHHHHHHHHHhhCCCC
Confidence 455455556789999999999999999999988753
Done!