Query 007334
Match_columns 607
No_of_seqs 629 out of 5453
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 23:10:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007334.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007334hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hjg_A GTP-binding protein ENG 100.0 1.1E-74 3.9E-79 625.8 37.2 421 120-578 3-435 (436)
2 4dcu_A GTP-binding protein ENG 100.0 7.8E-72 2.7E-76 607.0 38.6 421 120-578 23-455 (456)
3 1mky_A Probable GTP-binding pr 100.0 1.2E-70 4.1E-75 594.9 45.1 423 121-578 2-438 (439)
4 2qtf_A Protein HFLX, GTP-bindi 99.9 1.6E-28 5.5E-33 257.4 9.6 252 33-293 82-354 (364)
5 4djt_A GTP-binding nuclear pro 99.9 2E-25 6.8E-30 217.5 5.6 190 323-537 10-217 (218)
6 3iev_A GTP-binding protein ERA 99.9 5.3E-23 1.8E-27 211.4 18.9 170 120-293 10-182 (308)
7 1wf3_A GTP-binding protein; GT 99.9 4E-23 1.4E-27 211.3 15.6 165 121-292 8-172 (301)
8 2dyk_A GTP-binding protein; GT 99.9 4.2E-23 1.4E-27 190.3 13.4 159 121-291 2-160 (161)
9 4dhe_A Probable GTP-binding pr 99.9 1E-22 3.5E-27 198.9 14.9 175 115-293 24-211 (223)
10 1mky_A Probable GTP-binding pr 99.9 1E-21 3.4E-26 211.9 22.6 170 120-293 180-355 (439)
11 3ec1_A YQEH GTPase; atnos1, at 99.9 2.9E-23 9.8E-28 218.4 10.1 235 192-480 60-318 (369)
12 2gj8_A MNME, tRNA modification 99.9 6.3E-23 2.1E-27 192.5 11.4 148 324-491 4-164 (172)
13 3gee_A MNME, tRNA modification 99.9 7.4E-24 2.5E-28 229.2 5.5 226 56-292 157-397 (476)
14 3h2y_A GTPase family protein; 99.9 3.6E-23 1.2E-27 217.4 10.4 209 192-442 58-291 (368)
15 1xzp_A Probable tRNA modificat 99.9 1E-23 3.4E-28 228.4 4.7 220 56-292 169-404 (482)
16 3pqc_A Probable GTP-binding pr 99.9 1E-21 3.6E-26 186.9 18.2 170 116-292 19-193 (195)
17 1svi_A GTP-binding protein YSX 99.9 7.7E-22 2.6E-26 188.2 17.2 170 115-291 18-193 (195)
18 3iby_A Ferrous iron transport 99.9 2.2E-22 7.5E-27 201.2 13.4 153 325-490 2-164 (256)
19 2gj8_A MNME, tRNA modification 99.9 2.7E-22 9.1E-27 188.2 13.1 160 121-292 5-165 (172)
20 3tw8_B RAS-related protein RAB 99.9 2.8E-22 9.5E-27 188.4 12.3 161 120-294 9-172 (181)
21 3i8s_A Ferrous iron transport 99.9 2.1E-22 7.2E-27 203.5 12.0 156 324-492 3-168 (274)
22 4dkx_A RAS-related protein RAB 99.9 4.2E-22 1.4E-26 193.9 13.5 159 121-293 14-176 (216)
23 3iev_A GTP-binding protein ERA 99.9 1.1E-21 3.8E-26 201.6 17.3 160 324-493 10-182 (308)
24 3q72_A GTP-binding protein RAD 99.9 6.4E-22 2.2E-26 183.4 14.0 160 120-293 2-164 (166)
25 2nzj_A GTP-binding protein REM 99.9 5.9E-22 2E-26 185.2 13.7 161 120-293 4-169 (175)
26 2e87_A Hypothetical protein PH 99.9 7.8E-23 2.7E-27 214.7 8.1 169 119-294 166-337 (357)
27 3iby_A Ferrous iron transport 99.9 7.8E-22 2.7E-26 197.1 13.8 161 121-290 2-164 (256)
28 2qu8_A Putative nucleolar GTP- 99.9 5.1E-21 1.7E-25 187.9 19.3 170 120-293 29-205 (228)
29 1x3s_A RAS-related protein RAB 99.9 4.3E-22 1.5E-26 189.7 11.0 157 120-293 15-178 (195)
30 2g6b_A RAS-related protein RAB 99.9 1.7E-21 5.7E-26 183.1 14.8 161 120-293 10-174 (180)
31 3t5g_A GTP-binding protein RHE 99.9 2.3E-22 7.8E-27 189.5 8.8 159 120-293 6-169 (181)
32 1puj_A YLQF, conserved hypothe 99.9 1.4E-21 4.7E-26 197.9 14.9 175 175-385 4-178 (282)
33 3a1s_A Iron(II) transport prot 99.9 1.1E-21 3.7E-26 196.4 13.8 152 324-492 5-166 (258)
34 3q85_A GTP-binding protein REM 99.9 2.3E-21 7.9E-26 180.2 14.9 159 120-292 2-166 (169)
35 2il1_A RAB12; G-protein, GDP, 99.9 2E-21 7E-26 185.4 14.9 161 120-293 26-190 (192)
36 2wji_A Ferrous iron transport 99.9 1.1E-21 3.9E-26 182.4 12.7 150 325-491 4-163 (165)
37 2hup_A RAS-related protein RAB 99.9 3.3E-21 1.1E-25 185.4 15.9 161 120-293 29-193 (201)
38 1wf3_A GTP-binding protein; GT 99.9 1.7E-21 5.9E-26 199.2 14.4 152 325-491 8-171 (301)
39 2hjg_A GTP-binding protein ENG 99.9 1.3E-21 4.5E-26 210.8 14.2 171 119-293 174-349 (436)
40 3tkl_A RAS-related protein RAB 99.9 3.4E-21 1.2E-25 183.7 15.4 161 120-294 16-180 (196)
41 2g6b_A RAS-related protein RAB 99.9 1.1E-21 3.7E-26 184.5 11.4 153 323-497 9-178 (180)
42 1u8z_A RAS-related protein RAL 99.9 4.2E-21 1.4E-25 177.7 15.2 157 121-292 5-166 (168)
43 1xzp_A Probable tRNA modificat 99.9 3.2E-21 1.1E-25 208.7 16.3 153 324-492 243-404 (482)
44 2qu8_A Putative nucleolar GTP- 99.9 1.1E-20 3.7E-25 185.6 18.6 179 323-510 28-223 (228)
45 4dcu_A GTP-binding protein ENG 99.9 2.5E-21 8.4E-26 209.9 15.3 171 119-293 194-369 (456)
46 4dkx_A RAS-related protein RAB 99.9 7.6E-22 2.6E-26 192.1 10.2 147 324-492 13-175 (216)
47 1z0j_A RAB-22, RAS-related pro 99.9 1.9E-21 6.6E-26 180.6 12.5 158 121-291 7-167 (170)
48 2bme_A RAB4A, RAS-related prot 99.9 3.8E-21 1.3E-25 181.8 14.7 161 120-294 10-174 (186)
49 2fg5_A RAB-22B, RAS-related pr 99.9 2.1E-21 7.3E-26 185.2 12.8 160 120-292 23-185 (192)
50 2wji_A Ferrous iron transport 99.9 3.3E-21 1.1E-25 179.3 13.6 158 121-291 4-163 (165)
51 1r2q_A RAS-related protein RAB 99.9 2.6E-21 8.9E-26 179.6 12.9 161 120-292 6-168 (170)
52 1kao_A RAP2A; GTP-binding prot 99.9 5.4E-21 1.8E-25 176.7 14.8 157 121-292 4-165 (167)
53 3bc1_A RAS-related protein RAB 99.9 6.6E-21 2.2E-25 181.0 15.7 161 120-294 11-186 (195)
54 2ew1_A RAS-related protein RAB 99.9 5E-21 1.7E-25 184.4 15.0 161 120-294 26-190 (201)
55 1z0f_A RAB14, member RAS oncog 99.9 5.6E-21 1.9E-25 179.1 14.6 158 120-291 15-176 (179)
56 2fu5_C RAS-related protein RAB 99.9 1.4E-21 4.8E-26 184.4 10.5 162 120-295 8-173 (183)
57 3cph_A RAS-related protein SEC 99.9 5.1E-21 1.7E-25 185.2 14.7 162 119-295 19-184 (213)
58 2bov_A RAla, RAS-related prote 99.8 9.6E-21 3.3E-25 182.1 16.3 159 120-293 14-177 (206)
59 1z06_A RAS-related protein RAB 99.8 9.5E-21 3.3E-25 180.0 16.0 159 120-292 20-187 (189)
60 3k53_A Ferrous iron transport 99.8 8.5E-21 2.9E-25 191.5 16.5 155 324-495 3-168 (271)
61 3i8s_A Ferrous iron transport 99.8 1.8E-21 6.3E-26 196.6 11.5 163 120-292 3-168 (274)
62 3q72_A GTP-binding protein RAD 99.8 1.5E-21 5.2E-26 180.9 10.1 146 324-493 2-164 (166)
63 1zbd_A Rabphilin-3A; G protein 99.8 6.4E-21 2.2E-25 183.3 14.8 163 120-296 8-174 (203)
64 3dz8_A RAS-related protein RAB 99.8 1.9E-21 6.5E-26 185.3 10.9 162 119-293 22-186 (191)
65 2y8e_A RAB-protein 6, GH09086P 99.8 4.3E-21 1.5E-25 179.8 13.1 158 121-292 15-176 (179)
66 2a5j_A RAS-related protein RAB 99.8 4.5E-21 1.5E-25 182.7 13.3 161 120-294 21-185 (191)
67 2f7s_A C25KG, RAS-related prot 99.8 8.2E-21 2.8E-25 184.6 15.3 160 120-295 25-201 (217)
68 2a9k_A RAS-related protein RAL 99.8 1E-20 3.6E-25 178.5 15.6 159 120-293 18-181 (187)
69 3b1v_A Ferrous iron uptake tra 99.8 2E-21 6.8E-26 195.7 11.1 151 324-492 3-163 (272)
70 2nzj_A GTP-binding protein REM 99.8 2.7E-21 9.2E-26 180.7 11.3 150 324-494 4-170 (175)
71 3cbq_A GTP-binding protein REM 99.8 7.9E-21 2.7E-25 182.0 14.8 161 119-292 22-187 (195)
72 1c1y_A RAS-related protein RAP 99.8 6.1E-21 2.1E-25 176.7 13.5 157 121-291 4-165 (167)
73 1ek0_A Protein (GTP-binding pr 99.8 6E-21 2E-25 177.1 13.5 157 121-291 4-167 (170)
74 2oil_A CATX-8, RAS-related pro 99.8 5E-21 1.7E-25 182.5 13.3 161 120-294 25-189 (193)
75 1ega_A Protein (GTP-binding pr 99.8 1.8E-21 6.3E-26 199.2 10.9 166 121-293 9-175 (301)
76 3tw8_B RAS-related protein RAB 99.8 4.1E-21 1.4E-25 180.3 12.3 149 323-494 8-172 (181)
77 4dhe_A Probable GTP-binding pr 99.8 5E-21 1.7E-25 186.8 13.4 164 324-492 29-210 (223)
78 3reg_A RHO-like small GTPase; 99.8 4.7E-21 1.6E-25 182.9 12.8 159 120-292 23-187 (194)
79 1fzq_A ADP-ribosylation factor 99.8 1.3E-20 4.4E-25 178.1 15.7 148 323-492 15-177 (181)
80 1z2a_A RAS-related protein RAB 99.8 3.2E-21 1.1E-25 178.7 11.4 158 120-291 5-165 (168)
81 3clv_A RAB5 protein, putative; 99.8 9.1E-21 3.1E-25 181.4 14.9 159 120-294 7-205 (208)
82 2o52_A RAS-related protein RAB 99.8 5.3E-21 1.8E-25 183.8 13.3 161 120-294 25-189 (200)
83 2fn4_A P23, RAS-related protei 99.8 8E-21 2.8E-25 178.3 14.2 159 120-293 9-172 (181)
84 2gf9_A RAS-related protein RAB 99.8 2.5E-21 8.5E-26 184.0 10.8 161 120-294 22-186 (189)
85 1g16_A RAS-related protein SEC 99.8 3.2E-21 1.1E-25 179.1 11.3 159 120-293 3-165 (170)
86 4dsu_A GTPase KRAS, isoform 2B 99.8 2.1E-20 7.3E-25 176.8 17.2 159 121-295 5-168 (189)
87 2efe_B Small GTP-binding prote 99.8 7.7E-21 2.6E-25 178.7 13.9 160 120-293 12-175 (181)
88 2hxs_A RAB-26, RAS-related pro 99.8 2.2E-21 7.6E-26 181.9 10.2 159 120-292 6-172 (178)
89 3tkl_A RAS-related protein RAB 99.8 8.5E-21 2.9E-25 181.0 14.4 151 323-495 15-181 (196)
90 2dyk_A GTP-binding protein; GT 99.8 6.1E-21 2.1E-25 175.7 12.9 147 325-490 2-159 (161)
91 1z08_A RAS-related protein RAB 99.8 4.7E-21 1.6E-25 178.2 12.0 159 120-292 6-168 (170)
92 2erx_A GTP-binding protein DI- 99.8 6.9E-21 2.3E-25 177.1 12.7 157 121-292 4-166 (172)
93 4dsu_A GTPase KRAS, isoform 2B 99.8 3.2E-20 1.1E-24 175.6 17.5 147 324-494 4-167 (189)
94 2atx_A Small GTP binding prote 99.8 4.3E-21 1.5E-25 183.1 11.4 158 120-291 18-191 (194)
95 2g3y_A GTP-binding protein GEM 99.8 1E-20 3.4E-25 183.6 13.9 161 120-292 37-202 (211)
96 2e87_A Hypothetical protein PH 99.8 6.1E-22 2.1E-26 207.9 5.5 171 323-509 166-352 (357)
97 3a1s_A Iron(II) transport prot 99.8 2.5E-20 8.6E-25 186.5 16.8 160 120-292 5-166 (258)
98 4gzl_A RAS-related C3 botulinu 99.8 3.5E-21 1.2E-25 185.7 10.1 157 120-290 30-202 (204)
99 3kkq_A RAS-related protein M-R 99.8 2E-20 6.9E-25 176.4 15.1 158 120-292 18-181 (183)
100 2fn4_A P23, RAS-related protei 99.8 1.1E-20 3.9E-25 177.3 13.1 150 323-496 8-175 (181)
101 2p5s_A RAS and EF-hand domain 99.8 1.1E-20 3.7E-25 181.4 13.0 160 119-292 27-196 (199)
102 2atv_A RERG, RAS-like estrogen 99.8 1.8E-20 6.3E-25 179.2 14.5 158 120-293 28-191 (196)
103 1wms_A RAB-9, RAB9, RAS-relate 99.8 2.1E-20 7.3E-25 175.0 14.7 159 120-292 7-173 (177)
104 2bcg_Y Protein YP2, GTP-bindin 99.8 8.2E-21 2.8E-25 183.0 12.1 161 120-294 8-172 (206)
105 1svi_A GTP-binding protein YSX 99.8 1.9E-20 6.6E-25 178.5 14.5 157 323-491 22-193 (195)
106 1kao_A RAP2A; GTP-binding prot 99.8 7E-21 2.4E-25 176.0 10.8 146 324-493 3-166 (167)
107 1upt_A ARL1, ADP-ribosylation 99.8 2.9E-20 9.9E-25 173.0 15.0 148 323-492 6-168 (171)
108 1r8s_A ADP-ribosylation factor 99.8 2.1E-20 7.1E-25 172.8 13.8 146 325-492 1-161 (164)
109 2q3h_A RAS homolog gene family 99.8 1.1E-20 3.8E-25 181.3 12.3 160 120-293 20-195 (201)
110 2j1l_A RHO-related GTP-binding 99.8 2.1E-20 7.1E-25 181.7 14.4 160 120-293 34-209 (214)
111 3geh_A MNME, tRNA modification 99.8 2.9E-22 1E-26 215.9 1.3 187 90-292 191-383 (462)
112 1mh1_A RAC1; GTP-binding, GTPa 99.8 1.1E-20 3.9E-25 178.2 12.0 158 121-292 6-179 (186)
113 2lkc_A Translation initiation 99.8 3.5E-21 1.2E-25 180.6 8.3 156 120-293 8-171 (178)
114 2wjg_A FEOB, ferrous iron tran 99.8 3.4E-20 1.1E-24 175.7 15.1 153 324-493 7-169 (188)
115 1fzq_A ADP-ribosylation factor 99.8 2E-20 7E-25 176.7 13.6 154 120-292 16-177 (181)
116 3b1v_A Ferrous iron uptake tra 99.8 1.3E-20 4.3E-25 189.8 12.6 158 120-291 3-162 (272)
117 3cbq_A GTP-binding protein REM 99.8 2.1E-20 7.2E-25 179.0 13.5 150 323-493 22-188 (195)
118 3gee_A MNME, tRNA modification 99.8 6.9E-21 2.3E-25 206.0 11.3 154 323-492 232-397 (476)
119 2yc2_C IFT27, small RAB-relate 99.8 5.8E-21 2E-25 183.8 9.7 163 120-294 20-193 (208)
120 1r8s_A ADP-ribosylation factor 99.8 5E-21 1.7E-25 177.0 8.8 150 122-292 2-161 (164)
121 2lkc_A Translation initiation 99.8 1.1E-20 3.7E-25 177.2 11.1 156 323-496 7-174 (178)
122 4bas_A ADP-ribosylation factor 99.8 4.3E-20 1.5E-24 176.5 15.4 154 322-496 15-192 (199)
123 3con_A GTPase NRAS; structural 99.8 4.3E-20 1.5E-24 175.4 15.2 157 121-293 22-183 (190)
124 3t5g_A GTP-binding protein RHE 99.8 6.8E-21 2.3E-25 179.4 9.5 148 324-494 6-170 (181)
125 2iwr_A Centaurin gamma 1; ANK 99.8 3.6E-20 1.2E-24 173.9 14.5 154 121-294 8-170 (178)
126 2g3y_A GTP-binding protein GEM 99.8 8.3E-21 2.8E-25 184.1 10.2 150 323-492 36-202 (211)
127 3pqc_A Probable GTP-binding pr 99.8 6.2E-20 2.1E-24 174.5 16.1 158 323-492 22-193 (195)
128 3cpj_B GTP-binding protein YPT 99.8 9.3E-21 3.2E-25 185.3 10.6 160 120-293 13-176 (223)
129 1g16_A RAS-related protein SEC 99.8 5.2E-20 1.8E-24 170.9 15.2 147 324-493 3-165 (170)
130 1zj6_A ADP-ribosylation factor 99.8 4.7E-20 1.6E-24 174.9 15.1 146 324-491 16-176 (187)
131 3q3j_B RHO-related GTP-binding 99.8 1E-20 3.5E-25 184.0 10.7 160 120-293 27-203 (214)
132 1ky3_A GTP-binding protein YPT 99.8 1.8E-20 6E-25 176.1 11.9 161 120-293 8-178 (182)
133 2ew1_A RAS-related protein RAB 99.8 1.5E-20 5.3E-25 180.9 11.7 148 323-493 25-189 (201)
134 2il1_A RAB12; G-protein, GDP, 99.8 3.1E-20 1.1E-24 177.2 13.6 149 323-492 25-189 (192)
135 1u8z_A RAS-related protein RAL 99.8 2.3E-20 7.9E-25 172.6 12.4 146 324-492 4-166 (168)
136 2cjw_A GTP-binding protein GEM 99.8 2.4E-20 8.1E-25 178.2 12.7 162 120-293 6-172 (192)
137 2bme_A RAB4A, RAS-related prot 99.8 2.4E-20 8.4E-25 176.2 12.5 149 323-493 9-173 (186)
138 4bas_A ADP-ribosylation factor 99.8 2E-20 6.8E-25 178.9 11.9 160 119-293 16-189 (199)
139 2hup_A RAS-related protein RAB 99.8 2.9E-20 9.9E-25 178.8 13.0 149 323-493 28-193 (201)
140 3q85_A GTP-binding protein REM 99.8 2.8E-20 9.6E-25 172.8 12.5 148 325-493 3-167 (169)
141 2fv8_A H6, RHO-related GTP-bin 99.8 1.7E-20 6E-25 181.1 11.4 158 121-292 26-199 (207)
142 3oes_A GTPase rhebl1; small GT 99.8 6.3E-21 2.1E-25 183.3 8.1 157 120-293 24-187 (201)
143 1upt_A ARL1, ADP-ribosylation 99.8 9.5E-21 3.2E-25 176.3 9.0 154 120-292 7-168 (171)
144 1zj6_A ADP-ribosylation factor 99.8 3.4E-20 1.1E-24 175.9 12.8 155 119-292 15-177 (187)
145 2a9k_A RAS-related protein RAL 99.8 7E-20 2.4E-24 172.8 15.0 149 323-494 17-182 (187)
146 2gco_A H9, RHO-related GTP-bin 99.8 2.3E-20 7.7E-25 179.5 11.7 158 120-291 25-198 (201)
147 3cph_A RAS-related protein SEC 99.8 1.4E-19 4.8E-24 175.0 17.4 148 323-493 19-182 (213)
148 2b6h_A ADP-ribosylation factor 99.8 1E-20 3.4E-25 180.7 9.2 152 120-292 29-190 (192)
149 3bwd_D RAC-like GTP-binding pr 99.8 4.6E-21 1.6E-25 180.4 6.7 158 120-291 8-179 (182)
150 3kkq_A RAS-related protein M-R 99.8 4.7E-20 1.6E-24 173.9 13.6 147 323-492 17-181 (183)
151 2b6h_A ADP-ribosylation factor 99.8 7.8E-20 2.7E-24 174.5 15.3 147 323-491 28-189 (192)
152 2hxs_A RAB-26, RAS-related pro 99.8 1.4E-20 4.8E-25 176.4 9.8 146 323-491 5-171 (178)
153 2ce2_X GTPase HRAS; signaling 99.8 6.1E-20 2.1E-24 169.2 13.9 156 121-292 4-164 (166)
154 3ihw_A Centg3; RAS, centaurin, 99.8 1.1E-19 3.7E-24 172.3 15.9 154 120-293 20-180 (184)
155 2fu5_C RAS-related protein RAB 99.8 8.1E-21 2.8E-25 179.2 8.1 146 324-492 8-170 (183)
156 2x77_A ADP-ribosylation factor 99.8 8.1E-20 2.8E-24 173.4 15.0 149 323-493 21-184 (189)
157 2bov_A RAla, RAS-related prote 99.8 5.2E-20 1.8E-24 177.0 13.8 148 323-493 13-177 (206)
158 3clv_A RAB5 protein, putative; 99.8 2.3E-19 7.8E-24 171.7 18.2 148 323-493 6-204 (208)
159 2bcg_Y Protein YP2, GTP-bindin 99.8 4.9E-20 1.7E-24 177.6 13.4 149 324-494 8-172 (206)
160 2oil_A CATX-8, RAS-related pro 99.8 1.9E-20 6.6E-25 178.4 10.4 150 322-493 23-188 (193)
161 1wms_A RAB-9, RAB9, RAS-relate 99.8 8.8E-20 3E-24 170.8 14.7 147 324-492 7-173 (177)
162 3c5c_A RAS-like protein 12; GD 99.8 3.5E-20 1.2E-24 176.1 12.1 157 120-292 21-185 (187)
163 1z0j_A RAB-22, RAS-related pro 99.8 1.6E-20 5.6E-25 174.3 9.6 143 324-490 6-166 (170)
164 1moz_A ARL1, ADP-ribosylation 99.8 5.5E-20 1.9E-24 173.3 13.4 149 323-493 17-180 (183)
165 1c1y_A RAS-related protein RAP 99.8 4.2E-20 1.4E-24 171.0 12.3 146 324-491 3-165 (167)
166 2h17_A ADP-ribosylation factor 99.8 6.2E-20 2.1E-24 173.2 13.7 145 323-489 20-179 (181)
167 1zd9_A ADP-ribosylation factor 99.8 5.5E-20 1.9E-24 174.7 13.3 149 323-492 21-184 (188)
168 2j0v_A RAC-like GTP-binding pr 99.8 1.1E-20 3.9E-25 182.9 8.4 160 120-293 9-180 (212)
169 1lnz_A SPO0B-associated GTP-bi 99.8 4.3E-20 1.5E-24 191.5 13.3 198 82-292 122-329 (342)
170 1ksh_A ARF-like protein 2; sma 99.8 3.3E-20 1.1E-24 175.5 11.4 156 119-293 17-180 (186)
171 3reg_A RHO-like small GTPase; 99.8 1E-19 3.5E-24 173.6 14.9 149 323-492 22-187 (194)
172 1ksh_A ARF-like protein 2; sma 99.8 9.1E-20 3.1E-24 172.5 14.4 149 323-493 17-180 (186)
173 1z0f_A RAB14, member RAS oncog 99.8 3.3E-20 1.1E-24 173.8 11.2 147 323-491 14-176 (179)
174 3k53_A Ferrous iron transport 99.8 7.4E-20 2.5E-24 184.6 14.6 161 120-292 3-165 (271)
175 4djt_A GTP-binding nuclear pro 99.8 1E-20 3.5E-25 184.0 8.0 160 120-293 11-175 (218)
176 1vg8_A RAS-related protein RAB 99.8 2.4E-20 8.2E-25 179.6 10.5 160 120-294 8-176 (207)
177 2gf0_A GTP-binding protein DI- 99.8 5.2E-20 1.8E-24 175.9 12.5 158 120-293 8-171 (199)
178 2cjw_A GTP-binding protein GEM 99.8 2E-20 6.9E-25 178.7 9.6 151 324-494 6-173 (192)
179 1f6b_A SAR1; gtpases, N-termin 99.8 3.6E-20 1.2E-24 177.8 11.4 154 120-291 25-197 (198)
180 2y8e_A RAB-protein 6, GH09086P 99.8 2.5E-20 8.5E-25 174.6 10.0 146 324-491 14-175 (179)
181 2wjg_A FEOB, ferrous iron tran 99.8 1.1E-19 3.6E-24 172.2 14.4 160 121-293 8-169 (188)
182 2fg5_A RAB-22B, RAS-related pr 99.8 2E-20 6.8E-25 178.4 9.4 148 323-491 22-184 (192)
183 2a5j_A RAS-related protein RAB 99.8 4.8E-20 1.7E-24 175.5 12.0 148 323-493 20-184 (191)
184 3t1o_A Gliding protein MGLA; G 99.8 2.2E-20 7.5E-25 178.0 9.7 161 120-294 14-193 (198)
185 2h17_A ADP-ribosylation factor 99.8 5.3E-20 1.8E-24 173.7 12.1 152 120-290 21-180 (181)
186 1zd9_A ADP-ribosylation factor 99.8 7.4E-20 2.5E-24 173.8 13.1 155 120-292 22-184 (188)
187 3bc1_A RAS-related protein RAB 99.8 5.9E-20 2E-24 174.4 12.4 149 323-494 10-186 (195)
188 1r2q_A RAS-related protein RAB 99.8 3.2E-20 1.1E-24 172.2 10.2 144 324-490 6-166 (170)
189 3gj0_A GTP-binding nuclear pro 99.8 1.2E-20 4.1E-25 184.1 7.7 159 120-293 15-175 (221)
190 1m2o_B GTP-binding protein SAR 99.8 4.4E-20 1.5E-24 175.9 11.4 153 120-290 23-189 (190)
191 3geh_A MNME, tRNA modification 99.8 8.4E-21 2.9E-25 204.6 7.1 155 323-494 223-385 (462)
192 1ek0_A Protein (GTP-binding pr 99.8 1.5E-19 5.2E-24 167.6 14.6 148 324-490 3-166 (170)
193 2p5s_A RAS and EF-hand domain 99.8 3.1E-20 1.1E-24 178.1 10.2 146 322-491 26-195 (199)
194 2h57_A ADP-ribosylation factor 99.8 1.5E-19 5.2E-24 171.8 14.9 150 323-493 20-187 (190)
195 1z08_A RAS-related protein RAB 99.8 1.7E-20 5.9E-25 174.3 8.1 147 324-492 6-168 (170)
196 3con_A GTPase NRAS; structural 99.8 4.5E-19 1.5E-23 168.3 18.0 147 324-494 21-184 (190)
197 2o52_A RAS-related protein RAB 99.8 3.7E-20 1.3E-24 177.8 10.6 149 323-493 24-188 (200)
198 3dz8_A RAS-related protein RAB 99.8 1.1E-20 3.8E-25 179.9 6.9 150 322-493 21-186 (191)
199 2ce2_X GTPase HRAS; signaling 99.8 8.6E-19 2.9E-23 161.5 19.3 144 325-492 4-164 (166)
200 1z2a_A RAS-related protein RAB 99.8 6.4E-20 2.2E-24 169.9 11.3 145 324-491 5-165 (168)
201 2q3h_A RAS homolog gene family 99.8 3.4E-19 1.2E-23 170.8 16.6 161 323-495 19-197 (201)
202 1m2o_B GTP-binding protein SAR 99.8 8.8E-20 3E-24 173.8 12.3 148 324-489 23-188 (190)
203 1moz_A ARL1, ADP-ribosylation 99.8 7.8E-20 2.7E-24 172.3 11.8 155 119-293 17-180 (183)
204 1zbd_A Rabphilin-3A; G protein 99.8 4.8E-20 1.6E-24 177.1 10.5 146 324-492 8-170 (203)
205 2gf9_A RAS-related protein RAB 99.8 4.6E-20 1.6E-24 175.3 10.1 148 323-493 21-185 (189)
206 2h57_A ADP-ribosylation factor 99.8 4.6E-20 1.6E-24 175.4 10.1 156 120-292 21-186 (190)
207 1vg8_A RAS-related protein RAB 99.8 2.4E-19 8.1E-24 172.6 15.2 149 323-493 7-175 (207)
208 1z06_A RAS-related protein RAB 99.8 4.9E-20 1.7E-24 175.0 10.2 148 323-492 19-187 (189)
209 3qq5_A Small GTP-binding prote 99.8 2.4E-20 8.2E-25 198.5 8.9 164 117-292 31-195 (423)
210 1f6b_A SAR1; gtpases, N-termin 99.8 1.5E-19 5.1E-24 173.5 13.6 144 324-489 25-195 (198)
211 3oes_A GTPase rhebl1; small GT 99.8 3.1E-20 1.1E-24 178.4 8.7 149 323-495 23-189 (201)
212 2efe_B Small GTP-binding prote 99.8 1.3E-19 4.4E-24 170.4 12.6 146 324-491 12-173 (181)
213 2iwr_A Centaurin gamma 1; ANK 99.8 4.3E-19 1.5E-23 166.5 16.1 144 324-493 7-169 (178)
214 1m7b_A RND3/RHOE small GTP-bin 99.8 4E-20 1.4E-24 174.9 9.0 158 120-291 7-181 (184)
215 1x3s_A RAS-related protein RAB 99.8 1.9E-19 6.5E-24 171.3 13.7 147 324-493 15-178 (195)
216 1ky3_A GTP-binding protein YPT 99.8 6.6E-20 2.3E-24 172.2 10.3 152 323-494 7-179 (182)
217 2atv_A RERG, RAS-like estrogen 99.8 2.3E-19 7.9E-24 171.5 14.2 146 323-493 27-191 (196)
218 2j1l_A RHO-related GTP-binding 99.8 8.1E-20 2.8E-24 177.5 11.2 159 323-493 33-209 (214)
219 2erx_A GTP-binding protein DI- 99.8 7.3E-20 2.5E-24 170.1 10.4 145 324-491 3-165 (172)
220 4gzl_A RAS-related C3 botulinu 99.8 1.6E-19 5.5E-24 174.0 13.1 156 323-490 29-202 (204)
221 3l0i_B RAS-related protein RAB 99.8 1.6E-21 5.6E-26 187.1 -1.2 160 120-293 33-196 (199)
222 2fh5_B SR-beta, signal recogni 99.8 1.9E-19 6.4E-24 174.6 13.3 155 323-490 6-213 (214)
223 2f7s_A C25KG, RAS-related prot 99.8 7.4E-20 2.5E-24 177.8 10.0 147 323-492 24-198 (217)
224 3llu_A RAS-related GTP-binding 99.8 9.5E-20 3.2E-24 174.4 10.4 159 118-290 18-194 (196)
225 3lvq_E ARF-GAP with SH3 domain 99.8 9.5E-20 3.3E-24 199.8 11.8 158 323-502 321-493 (497)
226 2x77_A ADP-ribosylation factor 99.8 2E-20 6.8E-25 177.7 5.5 156 119-293 21-184 (189)
227 2gf0_A GTP-binding protein DI- 99.8 6.9E-19 2.3E-23 168.1 16.2 150 323-496 7-174 (199)
228 3ihw_A Centg3; RAS, centaurin, 99.8 4E-19 1.4E-23 168.4 14.3 146 323-494 19-181 (184)
229 3r7w_A Gtpase1, GTP-binding pr 99.8 2.1E-19 7.1E-24 184.6 13.2 162 121-291 4-179 (307)
230 3c5c_A RAS-like protein 12; GD 99.8 1.1E-19 3.8E-24 172.6 10.2 145 323-492 20-185 (187)
231 1mh1_A RAC1; GTP-binding, GTPa 99.8 1.2E-19 4E-24 171.2 10.3 156 324-491 5-178 (186)
232 1gwn_A RHO-related GTP-binding 99.8 8.1E-20 2.8E-24 176.4 9.0 158 120-291 28-202 (205)
233 3llu_A RAS-related GTP-binding 99.8 2.2E-19 7.4E-24 171.9 11.8 159 322-490 18-194 (196)
234 3cpj_B GTP-binding protein YPT 99.8 1.2E-19 4E-24 177.5 10.0 148 323-492 12-175 (223)
235 2atx_A Small GTP binding prote 99.8 1.2E-19 4.1E-24 173.0 9.8 157 323-491 17-191 (194)
236 3t1o_A Gliding protein MGLA; G 99.8 1.4E-19 4.7E-24 172.4 10.2 149 323-494 13-193 (198)
237 2fh5_B SR-beta, signal recogni 99.8 5.9E-19 2E-23 171.0 14.6 154 120-290 7-213 (214)
238 3qq5_A Small GTP-binding prote 99.8 1.4E-19 4.8E-24 192.5 10.7 153 323-491 33-194 (423)
239 3o47_A ADP-ribosylation factor 99.8 5.6E-19 1.9E-23 183.1 14.5 149 322-492 163-326 (329)
240 3gj0_A GTP-binding nuclear pro 99.8 3.1E-19 1.1E-23 174.1 11.9 147 323-492 14-174 (221)
241 3th5_A RAS-related C3 botulinu 99.7 6.8E-21 2.3E-25 183.4 0.0 157 120-290 30-202 (204)
242 2aka_B Dynamin-1; fusion prote 99.8 2.4E-19 8.1E-24 183.3 11.5 181 324-514 26-283 (299)
243 2j0v_A RAC-like GTP-binding pr 99.8 4.6E-19 1.6E-23 171.5 12.6 151 323-493 8-180 (212)
244 2fv8_A H6, RHO-related GTP-bin 99.8 3.1E-19 1.1E-23 172.3 10.9 156 324-491 25-198 (207)
245 3j2k_7 ERF3, eukaryotic polype 99.8 1.2E-18 4.1E-23 187.5 16.5 153 119-285 16-217 (439)
246 3j2k_7 ERF3, eukaryotic polype 99.8 1.4E-18 4.8E-23 186.9 17.0 152 323-485 16-217 (439)
247 2gco_A H9, RHO-related GTP-bin 99.8 3.5E-19 1.2E-23 171.1 10.7 157 323-491 24-198 (201)
248 2yc2_C IFT27, small RAB-relate 99.8 7.4E-20 2.5E-24 176.0 5.6 149 323-493 19-192 (208)
249 3q3j_B RHO-related GTP-binding 99.8 1E-18 3.4E-23 169.8 13.5 159 323-493 26-203 (214)
250 3bwd_D RAC-like GTP-binding pr 99.8 2.4E-19 8.3E-24 168.6 8.8 148 323-491 7-179 (182)
251 3lxw_A GTPase IMAP family memb 99.8 1.3E-18 4.3E-23 173.1 14.0 171 120-293 21-208 (247)
252 3o47_A ADP-ribosylation factor 99.8 1.2E-18 4.1E-23 180.6 14.3 154 120-292 165-326 (329)
253 1ega_A Protein (GTP-binding pr 99.8 1.3E-18 4.4E-23 178.0 14.2 155 325-491 9-173 (301)
254 2xtp_A GTPase IMAP family memb 99.8 1E-18 3.6E-23 175.0 13.2 173 119-293 21-208 (260)
255 2cxx_A Probable GTP-binding pr 99.8 7.6E-19 2.6E-23 166.4 11.3 161 121-293 2-184 (190)
256 2wkq_A NPH1-1, RAS-related C3 99.8 6.1E-19 2.1E-23 182.6 11.5 159 119-291 154-328 (332)
257 3cnl_A YLQF, putative uncharac 99.8 1.4E-19 4.8E-24 181.1 6.3 148 192-385 10-157 (262)
258 2zej_A Dardarin, leucine-rich 99.8 4.3E-19 1.5E-23 168.0 9.1 160 121-292 3-177 (184)
259 3cb4_D GTP-binding protein LEP 99.8 7.1E-19 2.4E-23 194.7 12.3 189 120-347 4-216 (599)
260 3r7w_A Gtpase1, GTP-binding pr 99.8 1.4E-18 4.7E-23 178.4 13.3 157 324-490 3-178 (307)
261 2zej_A Dardarin, leucine-rich 99.8 1.3E-18 4.5E-23 164.6 11.8 150 325-492 3-177 (184)
262 3l0i_B RAS-related protein RAB 99.8 1.2E-20 4.2E-25 180.9 -2.2 146 323-491 32-194 (199)
263 2aka_B Dynamin-1; fusion prote 99.8 5.5E-19 1.9E-23 180.5 9.8 171 118-290 24-250 (299)
264 2xtp_A GTPase IMAP family memb 99.8 1.1E-18 3.7E-23 174.8 10.7 167 323-494 21-209 (260)
265 1wb1_A Translation elongation 99.8 2.1E-18 7.3E-23 187.5 13.4 158 121-292 20-188 (482)
266 1lnz_A SPO0B-associated GTP-bi 99.8 1.2E-18 4.2E-23 180.6 10.8 151 325-492 159-329 (342)
267 3lxx_A GTPase IMAP family memb 99.8 3.4E-18 1.2E-22 169.0 13.5 166 323-495 28-216 (239)
268 1m7b_A RND3/RHOE small GTP-bin 99.8 1.3E-18 4.5E-23 164.5 10.1 154 323-491 6-181 (184)
269 3th5_A RAS-related C3 botulinu 99.6 5.1E-20 1.7E-24 177.3 0.0 156 323-490 29-202 (204)
270 2cxx_A Probable GTP-binding pr 99.8 7.5E-18 2.6E-22 159.5 14.9 156 325-493 2-184 (190)
271 3lvq_E ARF-GAP with SH3 domain 99.8 2.2E-18 7.6E-23 189.0 12.5 152 121-293 323-484 (497)
272 3lxx_A GTPase IMAP family memb 99.8 5.5E-18 1.9E-22 167.5 13.9 172 119-293 28-214 (239)
273 3lxw_A GTPase IMAP family memb 99.7 6.4E-18 2.2E-22 167.9 13.8 174 323-502 20-217 (247)
274 3t5d_A Septin-7; GTP-binding p 99.7 6.8E-18 2.3E-22 170.5 13.3 168 120-291 8-202 (274)
275 3tr5_A RF-3, peptide chain rel 99.7 1.6E-18 5.5E-23 189.8 8.7 117 119-249 12-149 (528)
276 1gwn_A RHO-related GTP-binding 99.7 1.1E-17 3.7E-22 161.4 13.3 154 323-491 27-202 (205)
277 2ywe_A GTP-binding protein LEP 99.7 5.2E-18 1.8E-22 187.4 12.2 158 119-293 5-184 (600)
278 2f9l_A RAB11B, member RAS onco 99.7 1.5E-17 5.2E-22 159.3 13.7 161 120-294 5-169 (199)
279 3izy_P Translation initiation 99.7 1.1E-19 3.8E-24 198.2 -1.5 158 120-292 4-167 (537)
280 3p26_A Elongation factor 1 alp 99.7 7.9E-18 2.7E-22 183.5 13.1 151 120-283 33-228 (483)
281 4a9a_A Ribosome-interacting GT 99.7 4.4E-18 1.5E-22 177.6 10.5 123 117-246 69-194 (376)
282 2qtf_A Protein HFLX, GTP-bindi 99.7 1.9E-17 6.4E-22 173.4 15.1 159 324-492 178-353 (364)
283 2wkq_A NPH1-1, RAS-related C3 99.7 6E-18 2.1E-22 175.1 10.9 156 324-491 155-328 (332)
284 1wb1_A Translation elongation 99.7 1E-17 3.5E-22 182.2 12.7 154 324-492 19-188 (482)
285 3p26_A Elongation factor 1 alp 99.7 1.5E-17 5E-22 181.4 13.4 150 323-484 32-229 (483)
286 3sjy_A Translation initiation 99.7 2.3E-17 7.7E-22 175.9 14.4 163 119-292 7-191 (403)
287 1zun_B Sulfate adenylate trans 99.7 1.7E-17 6E-22 178.4 13.6 155 120-286 24-217 (434)
288 2elf_A Protein translation elo 99.7 1.4E-17 4.6E-22 175.0 12.1 147 122-293 23-180 (370)
289 1jwy_B Dynamin A GTPase domain 99.7 4.9E-18 1.7E-22 174.9 8.2 173 119-293 23-262 (315)
290 2c78_A Elongation factor TU-A; 99.7 6.8E-18 2.3E-22 180.1 9.5 159 120-292 11-211 (405)
291 3t5d_A Septin-7; GTP-binding p 99.7 1.2E-17 4E-22 168.7 10.6 157 324-489 8-200 (274)
292 1kk1_A EIF2gamma; initiation o 99.7 2.2E-17 7.7E-22 176.4 13.0 160 120-292 10-199 (410)
293 1s0u_A EIF-2-gamma, translatio 99.7 4.2E-17 1.4E-21 174.1 15.0 160 120-292 8-197 (408)
294 3mca_A HBS1, elongation factor 99.7 7.9E-19 2.7E-23 195.1 1.6 161 117-291 174-395 (592)
295 1d2e_A Elongation factor TU (E 99.7 2.5E-17 8.6E-22 175.1 12.9 158 121-292 4-194 (397)
296 4a9a_A Ribosome-interacting GT 99.7 4E-17 1.4E-21 170.3 14.2 109 324-436 72-194 (376)
297 1jwy_B Dynamin A GTPase domain 99.7 3.6E-17 1.2E-21 168.4 13.5 180 324-513 24-288 (315)
298 3tr5_A RF-3, peptide chain rel 99.7 1.3E-17 4.4E-22 182.7 10.5 106 324-439 13-149 (528)
299 3izq_1 HBS1P, elongation facto 99.7 6.3E-18 2.2E-22 188.4 8.2 153 119-284 166-363 (611)
300 3izq_1 HBS1P, elongation facto 99.7 1.2E-17 4E-22 186.2 9.8 150 322-483 165-362 (611)
301 3dpu_A RAB family protein; roc 99.7 1.1E-17 3.8E-22 184.9 9.3 157 120-292 41-207 (535)
302 1f60_A Elongation factor EEF1A 99.7 1.7E-18 5.8E-23 187.3 1.7 149 324-484 7-203 (458)
303 2c78_A Elongation factor TU-A; 99.7 3.2E-17 1.1E-21 174.9 11.5 145 323-480 10-181 (405)
304 3sjy_A Translation initiation 99.7 4.2E-17 1.4E-21 173.8 11.3 152 323-490 7-189 (403)
305 1oix_A RAS-related protein RAB 99.7 8.2E-17 2.8E-21 153.3 12.1 157 120-290 29-189 (191)
306 1d2e_A Elongation factor TU (E 99.7 5.7E-17 2E-21 172.4 12.2 153 324-489 3-191 (397)
307 2elf_A Protein translation elo 99.7 1.4E-16 4.9E-21 167.2 14.8 139 326-493 23-180 (370)
308 1pui_A ENGB, probable GTP-bind 99.7 1.4E-16 4.8E-21 153.6 13.6 166 120-292 26-198 (210)
309 3mca_A HBS1, elongation factor 99.7 6.7E-18 2.3E-22 187.7 4.3 147 323-481 176-371 (592)
310 1zun_B Sulfate adenylate trans 99.7 1.4E-16 4.8E-21 171.4 14.4 149 324-485 24-216 (434)
311 1g7s_A Translation initiation 99.7 4.6E-17 1.6E-21 180.4 10.8 160 120-294 5-219 (594)
312 1u0l_A Probable GTPase ENGC; p 99.7 1.2E-17 4E-22 170.9 5.5 193 135-385 32-234 (301)
313 3izy_P Translation initiation 99.7 2.8E-18 9.7E-23 187.1 0.7 153 323-492 3-167 (537)
314 1zo1_I IF2, translation initia 99.7 1.7E-18 5.8E-23 187.3 -1.2 155 120-289 4-163 (501)
315 2f9l_A RAB11B, member RAS onco 99.7 2E-16 6.7E-21 151.6 13.0 148 324-493 5-168 (199)
316 1kk1_A EIF2gamma; initiation o 99.7 1.2E-16 4.2E-21 170.6 12.7 150 323-490 9-197 (410)
317 3cb4_D GTP-binding protein LEP 99.7 2.4E-16 8.2E-21 174.5 15.4 147 325-491 5-180 (599)
318 3r7w_B Gtpase2, GTP-binding pr 99.7 3.7E-17 1.3E-21 166.6 7.6 159 122-293 1-174 (331)
319 1wxq_A GTP-binding protein; st 99.7 1.3E-17 4.5E-22 176.5 4.2 89 122-216 2-114 (397)
320 1jny_A EF-1-alpha, elongation 99.7 1.3E-16 4.3E-21 171.7 11.7 151 120-284 6-204 (435)
321 1s0u_A EIF-2-gamma, translatio 99.7 2E-16 7E-21 168.8 13.2 151 324-490 8-195 (408)
322 1nrj_B SR-beta, signal recogni 99.7 7.2E-17 2.5E-21 156.7 8.9 144 118-279 10-170 (218)
323 1f60_A Elongation factor EEF1A 99.7 3.3E-17 1.1E-21 177.2 7.0 151 120-284 7-203 (458)
324 1jny_A EF-1-alpha, elongation 99.7 1E-16 3.6E-21 172.4 10.8 152 324-485 6-205 (435)
325 2x2e_A Dynamin-1; nitration, h 99.7 3.1E-17 1.1E-21 171.8 6.3 169 119-289 30-254 (353)
326 2ywe_A GTP-binding protein LEP 99.7 2E-16 6.9E-21 174.7 13.0 148 324-491 6-182 (600)
327 2x2e_A Dynamin-1; nitration, h 99.7 1.1E-16 3.6E-21 167.7 10.0 182 324-514 31-288 (353)
328 1zo1_I IF2, translation initia 99.7 8E-18 2.7E-22 182.1 1.2 149 323-489 3-163 (501)
329 1udx_A The GTP-binding protein 99.7 6.7E-16 2.3E-20 163.7 15.2 199 82-293 121-325 (416)
330 3r7w_B Gtpase2, GTP-binding pr 99.7 2.9E-16 1E-20 160.0 11.8 152 326-490 1-171 (331)
331 3avx_A Elongation factor TS, e 99.7 2.5E-16 8.5E-21 181.5 12.3 159 120-292 296-485 (1289)
332 1oix_A RAS-related protein RAB 99.7 5.5E-16 1.9E-20 147.6 12.7 145 324-490 29-189 (191)
333 2j69_A Bacterial dynamin-like 99.6 4.6E-16 1.6E-20 176.2 13.8 163 323-492 68-324 (695)
334 1g7s_A Translation initiation 99.6 2.6E-16 9E-21 174.3 11.4 158 324-493 5-218 (594)
335 1r5b_A Eukaryotic peptide chai 99.6 1.1E-16 3.9E-21 173.4 7.1 152 323-484 42-243 (467)
336 3avx_A Elongation factor TS, e 99.6 4.9E-16 1.7E-20 179.1 12.7 154 323-489 295-482 (1289)
337 3dpu_A RAB family protein; roc 99.6 1.3E-16 4.4E-21 176.3 7.7 149 323-493 40-208 (535)
338 1wxq_A GTP-binding protein; st 99.6 4.7E-17 1.6E-21 172.3 3.6 89 325-417 1-113 (397)
339 2xex_A Elongation factor G; GT 99.6 5.6E-16 1.9E-20 175.4 12.3 117 119-249 9-142 (693)
340 2h5e_A Peptide chain release f 99.6 6.5E-16 2.2E-20 169.4 12.1 116 120-249 13-149 (529)
341 2qm8_A GTPase/ATPase; G protei 99.6 1.9E-17 6.5E-22 171.8 -0.2 198 324-538 55-318 (337)
342 3c5h_A Glucocorticoid receptor 99.6 3.3E-17 1.1E-21 163.6 1.4 86 203-291 162-253 (255)
343 1r5b_A Eukaryotic peptide chai 99.6 2.1E-16 7.3E-21 171.2 7.8 151 120-284 43-243 (467)
344 2j69_A Bacterial dynamin-like 99.6 3.7E-16 1.3E-20 176.9 10.0 166 119-293 68-325 (695)
345 3zvr_A Dynamin-1; hydrolase, D 99.6 2.8E-16 9.6E-21 176.6 8.8 166 119-289 50-274 (772)
346 3c5h_A Glucocorticoid receptor 99.6 2.7E-16 9.3E-21 156.9 7.2 75 405-491 162-253 (255)
347 1dar_A EF-G, elongation factor 99.6 1E-15 3.5E-20 173.3 12.7 116 120-249 12-144 (691)
348 1h65_A Chloroplast outer envel 99.6 2.4E-15 8.3E-20 151.3 14.0 126 120-250 39-170 (270)
349 3zvr_A Dynamin-1; hydrolase, D 99.6 1.1E-15 3.7E-20 171.9 12.4 217 270-514 16-308 (772)
350 3def_A T7I23.11 protein; chlor 99.6 3.1E-15 1E-19 149.9 14.2 126 120-250 36-167 (262)
351 1pui_A ENGB, probable GTP-bind 99.6 3.4E-15 1.1E-19 143.9 12.7 159 323-491 25-197 (210)
352 2rdo_7 EF-G, elongation factor 99.6 6.8E-15 2.3E-19 166.7 17.2 117 119-249 9-149 (704)
353 2h5e_A Peptide chain release f 99.6 2.9E-15 1E-19 164.2 13.7 106 324-439 13-149 (529)
354 1nrj_B SR-beta, signal recogni 99.6 1E-15 3.5E-20 148.5 8.9 135 323-479 11-170 (218)
355 2yv5_A YJEQ protein; hydrolase 99.6 3.3E-15 1.1E-19 152.7 12.6 145 199-385 75-229 (302)
356 3t34_A Dynamin-related protein 99.6 1.6E-15 5.5E-20 159.2 10.2 164 119-287 33-255 (360)
357 3def_A T7I23.11 protein; chlor 99.6 6.1E-15 2.1E-19 147.7 13.6 113 324-439 36-166 (262)
358 2xex_A Elongation factor G; GT 99.6 5E-15 1.7E-19 167.7 13.9 106 324-439 10-142 (693)
359 2dy1_A Elongation factor G; tr 99.6 6.7E-15 2.3E-19 166.0 14.8 114 120-247 9-139 (665)
360 1h65_A Chloroplast outer envel 99.6 1.1E-14 3.7E-19 146.6 14.5 114 324-440 39-170 (270)
361 2www_A Methylmalonic aciduria 99.6 1.5E-15 5.3E-20 158.3 8.1 153 324-493 74-279 (349)
362 3t34_A Dynamin-related protein 99.6 8.3E-15 2.8E-19 153.7 13.3 177 325-513 35-293 (360)
363 1udx_A The GTP-binding protein 99.6 1.4E-14 4.9E-19 153.5 15.2 152 325-493 158-325 (416)
364 1dar_A EF-G, elongation factor 99.6 1.1E-14 3.7E-19 164.9 14.5 107 323-439 11-144 (691)
365 2ged_A SR-beta, signal recogni 99.6 9.2E-15 3.2E-19 138.7 11.1 112 323-447 47-179 (193)
366 2rdo_7 EF-G, elongation factor 99.6 2.3E-14 7.8E-19 162.4 16.1 106 324-439 10-149 (704)
367 3p32_A Probable GTPase RV1496/ 99.6 2.5E-15 8.7E-20 157.2 7.7 153 324-493 79-284 (355)
368 2www_A Methylmalonic aciduria 99.6 3.3E-15 1.1E-19 155.8 8.4 154 119-293 73-279 (349)
369 2qag_A Septin-2, protein NEDD5 99.6 1.2E-14 4E-19 152.3 11.7 159 324-492 37-232 (361)
370 2qag_A Septin-2, protein NEDD5 99.5 9.9E-15 3.4E-19 152.9 11.0 168 120-292 37-232 (361)
371 1jal_A YCHF protein; nucleotid 99.5 8.6E-15 3E-19 151.9 9.9 89 324-417 2-108 (363)
372 3vqt_A RF-3, peptide chain rel 99.5 1.7E-14 5.8E-19 158.8 12.4 116 120-249 31-167 (548)
373 2dy1_A Elongation factor G; tr 99.5 3.5E-14 1.2E-18 160.1 15.1 104 324-437 9-139 (665)
374 3vqt_A RF-3, peptide chain rel 99.5 4.3E-14 1.5E-18 155.6 14.4 106 324-439 31-167 (548)
375 2ged_A SR-beta, signal recogni 99.5 1.1E-14 3.7E-19 138.2 8.4 118 118-250 46-172 (193)
376 3p32_A Probable GTPase RV1496/ 99.5 7E-15 2.4E-19 153.9 7.0 154 119-293 78-284 (355)
377 1jal_A YCHF protein; nucleotid 99.5 3.8E-14 1.3E-18 147.0 12.2 89 121-215 3-108 (363)
378 2dby_A GTP-binding protein; GD 99.5 5.4E-14 1.8E-18 146.8 12.4 89 325-417 2-111 (368)
379 2p67_A LAO/AO transport system 99.5 6.7E-14 2.3E-18 145.6 12.6 151 324-492 56-260 (341)
380 1t9h_A YLOQ, probable GTPase E 99.5 7.6E-15 2.6E-19 149.2 4.1 145 200-385 83-237 (307)
381 3j25_A Tetracycline resistance 99.5 2.3E-14 7.8E-19 160.9 7.7 162 120-293 2-239 (638)
382 2qpt_A EH domain-containing pr 99.5 8E-14 2.7E-18 153.6 11.2 127 118-249 63-233 (550)
383 2p67_A LAO/AO transport system 99.5 4.4E-14 1.5E-18 146.9 8.2 150 120-292 56-260 (341)
384 2wsm_A Hydrogenase expression/ 99.5 7.5E-14 2.5E-18 135.7 9.0 155 118-293 28-214 (221)
385 3j25_A Tetracycline resistance 99.4 3.7E-14 1.3E-18 159.2 5.3 105 325-439 3-134 (638)
386 2dby_A GTP-binding protein; GD 99.4 1.9E-13 6.5E-18 142.7 10.3 89 121-215 2-111 (368)
387 2wsm_A Hydrogenase expression/ 99.4 9.2E-14 3.1E-18 135.0 6.5 148 324-493 30-214 (221)
388 1yrb_A ATP(GTP)binding protein 99.4 3.1E-13 1.1E-17 134.9 10.4 167 120-293 14-257 (262)
389 1n0u_A EF-2, elongation factor 99.4 1.8E-13 6E-18 158.1 9.2 104 324-437 19-163 (842)
390 4fn5_A EF-G 1, elongation fact 99.4 1.5E-12 5.3E-17 148.0 13.3 119 118-248 11-151 (709)
391 2qag_C Septin-7; cell cycle, c 99.4 9.6E-13 3.3E-17 139.6 10.7 166 120-290 31-224 (418)
392 2qnr_A Septin-2, protein NEDD5 99.4 1.1E-12 3.9E-17 133.7 10.8 168 120-292 18-213 (301)
393 2qpt_A EH domain-containing pr 99.4 6E-12 2.1E-16 138.6 16.5 118 323-440 64-234 (550)
394 1n0u_A EF-2, elongation factor 99.3 7.3E-13 2.5E-17 153.0 8.3 117 120-248 19-164 (842)
395 2qm8_A GTPase/ATPase; G protei 99.3 2.8E-13 9.7E-18 140.4 4.3 154 120-292 55-260 (337)
396 2rcn_A Probable GTPase ENGC; Y 99.3 2E-12 6.9E-17 133.8 10.2 145 200-385 127-281 (358)
397 4fn5_A EF-G 1, elongation fact 99.3 7.6E-12 2.6E-16 142.3 15.4 105 325-439 14-152 (709)
398 2qnr_A Septin-2, protein NEDD5 99.3 2.1E-12 7.3E-17 131.7 9.3 159 323-491 17-212 (301)
399 1yrb_A ATP(GTP)binding protein 99.3 3E-12 1E-16 127.7 7.7 163 323-492 13-256 (262)
400 2qag_C Septin-7; cell cycle, c 99.3 8.4E-12 2.9E-16 132.3 11.4 158 323-489 30-223 (418)
401 2ohf_A Protein OLA1, GTP-bindi 99.3 1.9E-12 6.7E-17 135.5 4.6 91 323-418 21-129 (396)
402 2hf9_A Probable hydrogenase ni 99.3 1.8E-11 6.2E-16 119.1 10.7 153 119-292 37-223 (226)
403 2hf9_A Probable hydrogenase ni 99.2 2.8E-11 9.5E-16 117.8 11.6 148 324-493 38-224 (226)
404 3ec1_A YQEH GTPase; atnos1, at 99.2 8.8E-13 3E-17 138.4 -3.1 148 121-280 163-318 (369)
405 3h2y_A GTPase family protein; 99.2 7.6E-13 2.6E-17 138.7 -4.1 121 121-250 161-289 (368)
406 2ohf_A Protein OLA1, GTP-bindi 99.1 5.2E-11 1.8E-15 124.6 7.4 90 120-215 22-128 (396)
407 3ohm_A Guanine nucleotide-bind 99.1 9E-11 3.1E-15 120.2 7.0 124 362-495 157-320 (327)
408 1ni3_A YCHF GTPase, YCHF GTP-b 99.1 1.9E-10 6.6E-15 120.6 9.1 92 323-417 19-127 (392)
409 2j37_W Signal recognition part 99.1 2E-10 7E-15 124.2 9.3 158 120-290 101-310 (504)
410 2j37_W Signal recognition part 99.0 2.7E-11 9.2E-16 131.1 1.4 183 323-512 100-338 (504)
411 4fid_A G protein alpha subunit 99.0 1.7E-10 5.9E-15 118.5 4.8 122 362-493 151-328 (340)
412 2qag_B Septin-6, protein NEDD5 99.0 1.5E-09 5E-14 114.7 11.2 149 120-274 42-217 (427)
413 1ni3_A YCHF GTPase, YCHF GTP-b 99.0 6.2E-10 2.1E-14 116.8 7.3 91 120-215 20-127 (392)
414 1cip_A Protein (guanine nucleo 98.9 2.6E-10 9E-15 118.4 4.0 124 159-293 182-344 (353)
415 1tq4_A IIGP1, interferon-induc 98.9 1.5E-08 5.2E-13 107.0 15.2 162 120-293 69-253 (413)
416 3ohm_A Guanine nucleotide-bind 98.9 8.7E-10 3E-14 112.8 5.0 126 157-293 154-318 (327)
417 1cip_A Protein (guanine nucleo 98.9 1.7E-09 5.7E-14 112.3 6.7 122 363-494 184-345 (353)
418 1zcb_A G alpha I/13; GTP-bindi 98.9 9.6E-10 3.3E-14 114.5 4.3 122 159-293 190-353 (362)
419 2qag_B Septin-6, protein NEDD5 98.9 4.1E-09 1.4E-13 111.2 9.0 141 325-474 43-217 (427)
420 1zcb_A G alpha I/13; GTP-bindi 98.8 2.4E-09 8.1E-14 111.6 6.7 122 364-495 193-355 (362)
421 3sop_A Neuronal-specific septi 98.8 1.6E-08 5.6E-13 101.1 11.6 126 121-249 3-155 (270)
422 1f5n_A Interferon-induced guan 98.8 4.6E-09 1.6E-13 115.5 7.2 102 120-230 38-147 (592)
423 2v3c_C SRP54, signal recogniti 98.8 2E-10 6.7E-15 122.5 -4.6 181 324-511 99-335 (432)
424 1azs_C GS-alpha; complex (lyas 98.7 4.5E-09 1.6E-13 110.4 4.9 120 161-293 208-385 (402)
425 2v3c_C SRP54, signal recogniti 98.7 1E-08 3.5E-13 109.3 6.7 120 120-248 99-252 (432)
426 1puj_A YLQF, conserved hypothe 98.7 6.8E-09 2.3E-13 104.6 4.8 59 120-183 120-178 (282)
427 2xtz_A Guanine nucleotide-bind 98.7 4.9E-09 1.7E-13 108.8 3.2 113 169-293 182-345 (354)
428 1azs_C GS-alpha; complex (lyas 98.7 1.8E-08 6E-13 105.9 7.4 119 365-493 210-385 (402)
429 4fid_A G protein alpha subunit 98.7 1.3E-08 4.4E-13 104.6 5.8 126 157-293 148-328 (340)
430 1f5n_A Interferon-induced guan 98.7 2E-08 6.8E-13 110.4 7.6 61 324-386 38-105 (592)
431 1u0l_A Probable GTPase ENGC; p 98.6 4E-08 1.4E-12 100.0 8.0 124 339-488 32-168 (301)
432 3dm5_A SRP54, signal recogniti 98.6 9.3E-08 3.2E-12 101.4 10.6 139 323-482 99-280 (443)
433 1tq4_A IIGP1, interferon-induc 98.6 2.2E-07 7.5E-12 98.1 13.2 158 324-491 69-251 (413)
434 2xtz_A Guanine nucleotide-bind 98.6 3.9E-08 1.3E-12 102.0 6.7 113 371-493 182-345 (354)
435 3dm5_A SRP54, signal recogniti 98.6 4.6E-07 1.6E-11 96.1 14.9 148 120-282 100-280 (443)
436 3sop_A Neuronal-specific septi 98.6 1.2E-07 4.2E-12 94.7 9.4 117 325-441 3-157 (270)
437 3cnl_A YLQF, putative uncharac 98.5 4.3E-08 1.5E-12 97.6 3.8 58 121-183 100-157 (262)
438 3kl4_A SRP54, signal recogniti 98.5 7.7E-07 2.6E-11 94.3 12.0 148 120-282 97-279 (433)
439 3kl4_A SRP54, signal recogniti 98.3 1.4E-06 4.8E-11 92.3 10.5 139 324-481 97-278 (433)
440 1j8m_F SRP54, signal recogniti 98.3 2.8E-06 9.5E-11 86.0 10.2 148 121-282 99-280 (297)
441 3l82_B F-box only protein 4; T 98.2 2.3E-06 7.9E-11 80.7 6.6 99 192-292 114-222 (227)
442 2yv5_A YJEQ protein; hydrolase 98.1 9.4E-07 3.2E-11 89.8 3.7 77 402-488 76-164 (302)
443 1j8m_F SRP54, signal recogniti 98.1 2.8E-06 9.7E-11 85.9 7.0 140 324-483 98-281 (297)
444 3szr_A Interferon-induced GTP- 98.1 1.8E-05 6.1E-10 88.2 14.0 78 170-249 147-229 (608)
445 3q5d_A Atlastin-1; G protein, 98.0 2.3E-05 8E-10 83.3 10.4 60 120-182 67-152 (447)
446 2xxa_A Signal recognition part 97.8 4.9E-05 1.7E-09 80.8 9.8 113 323-439 99-255 (433)
447 3l2o_B F-box only protein 4; s 97.8 1.7E-05 5.9E-10 78.4 5.2 98 193-292 200-307 (312)
448 3e70_C DPA, signal recognition 97.8 6.6E-05 2.3E-09 76.9 9.5 147 121-282 130-309 (328)
449 3szr_A Interferon-induced GTP- 97.7 4.6E-05 1.6E-09 84.8 8.2 22 326-347 47-68 (608)
450 3q5d_A Atlastin-1; G protein, 97.7 2.1E-05 7.2E-10 83.6 4.4 60 325-385 68-153 (447)
451 2yhs_A FTSY, cell division pro 97.6 0.00047 1.6E-08 73.8 13.5 148 121-282 294-479 (503)
452 3l82_B F-box only protein 4; T 97.6 0.0001 3.4E-09 69.6 7.1 84 399-491 119-221 (227)
453 3e70_C DPA, signal recognition 97.6 7.8E-05 2.7E-09 76.3 6.9 138 323-483 128-310 (328)
454 2px0_A Flagellar biosynthesis 97.5 0.00012 4.2E-09 73.8 7.0 144 120-280 105-278 (296)
455 2xxa_A Signal recognition part 97.5 0.0004 1.4E-08 73.8 11.0 120 120-248 100-254 (433)
456 3l2o_B F-box only protein 4; s 97.5 0.00017 5.9E-09 71.3 7.0 85 398-491 203-306 (312)
457 1rj9_A FTSY, signal recognitio 97.4 0.00044 1.5E-08 69.9 9.8 149 121-282 103-288 (304)
458 1vma_A Cell division protein F 97.4 0.00027 9.3E-09 71.5 7.8 148 121-282 105-290 (306)
459 1zu4_A FTSY; GTPase, signal re 97.3 0.0016 5.5E-08 66.3 12.9 147 121-282 106-295 (320)
460 2ffh_A Protein (FFH); SRP54, s 97.3 0.002 6.9E-08 68.0 13.5 147 121-282 99-278 (425)
461 1t9h_A YLOQ, probable GTPase E 97.3 8.4E-05 2.9E-09 75.2 2.7 76 402-486 83-170 (307)
462 3ney_A 55 kDa erythrocyte memb 97.3 5.3E-05 1.8E-09 71.5 1.1 106 325-432 20-138 (197)
463 3ney_A 55 kDa erythrocyte memb 97.1 0.00019 6.3E-09 67.8 3.1 57 121-181 20-77 (197)
464 1rj9_A FTSY, signal recognitio 97.1 0.00025 8.7E-09 71.7 3.4 23 324-346 102-124 (304)
465 1ls1_A Signal recognition part 97.1 0.0047 1.6E-07 62.1 12.7 145 121-280 99-276 (295)
466 4dzz_A Plasmid partitioning pr 97.0 0.0013 4.4E-08 61.9 7.9 115 121-248 2-144 (206)
467 2og2_A Putative signal recogni 96.9 0.0067 2.3E-07 62.6 12.7 149 121-282 158-344 (359)
468 1vma_A Cell division protein F 96.7 0.0013 4.4E-08 66.5 5.4 23 324-346 104-126 (306)
469 3b9q_A Chloroplast SRP recepto 96.7 0.0099 3.4E-07 59.9 11.9 149 121-282 101-287 (302)
470 1zu4_A FTSY; GTPase, signal re 96.7 0.0015 5.1E-08 66.5 5.7 23 324-346 105-127 (320)
471 2rcn_A Probable GTPase ENGC; Y 96.7 0.002 6.7E-08 66.4 6.6 73 403-486 128-212 (358)
472 2yhs_A FTSY, cell division pro 96.5 0.0045 1.5E-07 66.2 8.1 23 324-346 293-315 (503)
473 2ffh_A Protein (FFH); SRP54, s 96.5 0.00085 2.9E-08 70.9 2.0 66 370-439 179-252 (425)
474 2px0_A Flagellar biosynthesis 96.4 0.0033 1.1E-07 63.3 5.6 23 324-346 105-127 (296)
475 4ido_A Atlastin-1; GTPase, GTP 96.2 0.015 5.2E-07 61.4 10.0 23 119-141 66-88 (457)
476 3cwq_A Para family chromosome 96.2 0.0021 7.1E-08 61.2 2.7 113 122-248 2-134 (209)
477 1ls1_A Signal recognition part 96.1 0.0022 7.7E-08 64.5 3.1 66 370-439 179-252 (295)
478 1bif_A 6-phosphofructo-2-kinas 96.1 0.0009 3.1E-08 72.1 0.1 117 120-245 39-160 (469)
479 1kgd_A CASK, peripheral plasma 95.9 0.0042 1.4E-07 57.4 3.2 23 121-143 6-28 (180)
480 1ko7_A HPR kinase/phosphatase; 95.8 0.0062 2.1E-07 61.4 4.5 91 234-349 79-169 (314)
481 3cf2_A TER ATPase, transitiona 95.8 0.32 1.1E-05 55.3 18.7 24 120-143 238-261 (806)
482 1kgd_A CASK, peripheral plasma 95.6 0.0031 1.1E-07 58.3 1.2 38 326-363 7-45 (180)
483 1ye8_A Protein THEP1, hypothet 95.5 0.0069 2.4E-07 56.0 3.1 23 122-144 2-24 (178)
484 3end_A Light-independent proto 95.5 0.018 6.1E-07 58.0 6.5 67 169-246 156-225 (307)
485 1ex7_A Guanylate kinase; subst 95.3 0.0041 1.4E-07 58.0 1.1 39 123-163 4-43 (186)
486 1lvg_A Guanylate kinase, GMP k 95.3 0.0074 2.5E-07 56.7 2.7 23 121-143 5-27 (198)
487 1ex7_A Guanylate kinase; subst 95.2 0.0024 8.1E-08 59.6 -0.8 51 327-379 4-55 (186)
488 1np6_A Molybdopterin-guanine d 95.2 0.011 3.7E-07 54.4 3.4 25 119-143 5-29 (174)
489 3kjh_A CO dehydrogenase/acetyl 95.0 0.0088 3E-07 57.9 2.3 64 168-245 130-194 (254)
490 1ye8_A Protein THEP1, hypothet 94.9 0.011 3.9E-07 54.5 2.8 22 326-347 2-23 (178)
491 1znw_A Guanylate kinase, GMP k 94.9 0.012 4E-07 55.7 3.0 24 121-144 21-44 (207)
492 1ihu_A Arsenical pump-driving 94.8 0.079 2.7E-06 58.5 9.8 22 120-141 8-29 (589)
493 2f1r_A Molybdopterin-guanine d 94.8 0.0079 2.7E-07 55.2 1.3 24 120-143 2-25 (171)
494 3tr0_A Guanylate kinase, GMP k 94.7 0.015 5E-07 54.5 3.0 23 121-143 8-30 (205)
495 1z6g_A Guanylate kinase; struc 94.7 0.014 4.7E-07 55.8 2.7 23 121-143 24-46 (218)
496 1zp6_A Hypothetical protein AT 94.6 0.015 5.3E-07 53.7 2.9 23 121-143 10-32 (191)
497 3c8u_A Fructokinase; YP_612366 94.6 0.015 5.1E-07 54.9 2.8 23 121-143 23-45 (208)
498 3a00_A Guanylate kinase, GMP k 94.6 0.015 5.1E-07 53.9 2.7 22 122-143 3-24 (186)
499 1s96_A Guanylate kinase, GMP k 94.5 0.017 5.8E-07 55.3 3.0 24 121-144 17-40 (219)
500 3tif_A Uncharacterized ABC tra 94.5 0.018 6E-07 55.8 3.1 23 121-143 32-54 (235)
No 1
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=100.00 E-value=1.1e-74 Score=625.78 Aligned_cols=421 Identities=33% Similarity=0.525 Sum_probs=332.6
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
.++|+|||+||||||||+|+|++.+.+++.+.+| +|+|..+..+.+.+..+.+|||||+..... .+..++..++..
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g--~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~--~~~~~~~~~~~~ 78 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPG--VTRDRIYSSAEWLNYDFNLIDTGGIDIGDE--PFLAQIRQQAEI 78 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-------------CEEEECTTCSSCCEEEC-----------CHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCC--CccceEEEEEEECCceEEEEECCCCCCcch--hHHHHHHHHHHH
Confidence 4789999999999999999999998888899998 999999999999999999999999974322 244467778888
Q ss_pred HhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLG 279 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~g 279 (607)
++++||++|+|+|++++.+..+.++.+++++. ++|+++|+||+|+...... ..+++.+++++++++||++|.|
T Consensus 79 ~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~--~~pvilv~NK~D~~~~~~~-----~~~~~~lg~~~~~~iSA~~g~g 151 (436)
T 2hjg_A 79 AMDEADVIIFMVNGREGVTAADEEVAKILYRT--KKPVVLAVNKLDNTEMRAN-----IYDFYSLGFGEPYPISGTHGLG 151 (436)
T ss_dssp HHHHCSEEEEEEETTTCSCHHHHHHHHHHTTC--CSCEEEEEECCCC-----C-----CCSSGGGSSCCCEECBTTTTBT
T ss_pred HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc--CCCEEEEEECccCccchhh-----HHHHHHcCCCCeEEEeCcCCCC
Confidence 99999999999999999999998888888765 7899999999998764221 1234567777899999999999
Q ss_pred hHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCce
Q 007334 280 MTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLT 359 (607)
Q Consensus 280 i~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT 359 (607)
+++|++.|.+.+++. . +..+....++|+++|+||||||||+|+|++.+...+++++|||
T Consensus 152 v~~L~~~i~~~l~~~-------------------~--~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT 210 (436)
T 2hjg_A 152 LGDLLDAVAEHFKNI-------------------P--ETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTT 210 (436)
T ss_dssp HHHHHHHHHHTGGGC-------------------C--SSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC------
T ss_pred hHHHHHHHHHhcCcc-------------------c--cccccccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCce
Confidence 999999998877531 0 0001224589999999999999999999999888899999999
Q ss_pred eeeEEEEEEEcCeEEEEEecCCCcccc-cccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEE
Q 007334 360 RDSVRVHFEYQGRTVYLVDTAGWLQRE-KEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLV 428 (607)
Q Consensus 360 ~~~~~~~~~~~~~~~~liDTpG~~~~~-~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~i 428 (607)
+|.....+.+++..+.||||||+.+.. ..+..+.+...++..+++.||++|+|+|++++ .....++|+|
T Consensus 211 ~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~ii 290 (436)
T 2hjg_A 211 RDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVV 290 (436)
T ss_dssp ---CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEE
T ss_pred eeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEE
Confidence 999988999999999999999987763 23456778888888899999999999999885 2345689999
Q ss_pred EEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 007334 429 VIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWLR 508 (607)
Q Consensus 429 vv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~~l~~~l~ 508 (607)
+|+||||+.+..... .+. +..++.+.+....++|++++||++|.|++++|+.+.+.+.++..+++|+.||+||.
T Consensus 291 iv~NK~Dl~~~~~~~--~~~----~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~~~~~~~t~~ln~~l~ 364 (436)
T 2hjg_A 291 IVVNKWDAVDKDEST--MKE----FEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSLRVQTNVLNDVIM 364 (436)
T ss_dssp EEEECGGGSCCCTTH--HHH----HHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred EEEECccCCCcchHH--HHH----HHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHH
Confidence 999999998653321 111 22334445555567899999999999999999999999999999999999999999
Q ss_pred HHHHhCCCC-CCCCcCcEEEEeecCCCCCEEEEEecCCCCCCHHHHHHHHHHhHhhCCCCceeEEEEEeec
Q 007334 509 KVMGRHSWK-DQSAQPKIKYFTQVKARPPTFVAFLSGKKTLSDAELRFLTKSLKEDFDLGGIPIRITQRSV 578 (607)
Q Consensus 509 ~~~~~~~~~-~~~~~~ki~~~~q~~~~pp~f~~~~n~~~~l~~~y~r~l~~~~~~~~~~~g~pi~~~~~~~ 578 (607)
+++..+|+| ..++++|++|++|+..+||+|++|+|.|+.++++|+|||+|+||+.|||.|+||+|+||.+
T Consensus 365 ~~~~~~~pp~~~~~~~~i~y~~q~~~~pp~~~~~~n~~~~~~~~y~r~l~~~~r~~~~~~g~p~~~~~~~~ 435 (436)
T 2hjg_A 365 DAVAMNPTPTHNGSRLKIYYATQVSVKPPSFVVFVNDPELMHFSYERFLENRIRDAFGFEGTPIKIFARAR 435 (436)
T ss_dssp HHHHHSCCCEETTEECCEEEEEEEETTTTEEEEEESCGGGCCHHHHHHHHHHHHHHHCCTTSCCEEEEEEC
T ss_pred HHHHhCCCCccCCcceeEEeEecCCCCCCEEEEEeCCcccCCHHHHHHHHHHHHHHcCCCceeEEEEEecC
Confidence 999999887 5789999999999999999999999999999999999999999999999999999999965
No 2
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=100.00 E-value=7.8e-72 Score=607.01 Aligned_cols=421 Identities=33% Similarity=0.523 Sum_probs=337.3
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
.++|+|||+||||||||+|+|++.+.+.+.+.+| +|++..+..+.+.+..+.+|||||+.... +....++..++..
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g--~t~~~~~~~~~~~~~~~~liDT~G~~~~~--~~~~~~~~~~~~~ 98 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPG--VTRDRIYSSAEWLNYDFNLIDTGGIDIGD--EPFLAQIRQQAEI 98 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC-------------CEEEECTTCSSCCEEECCCC--------CCHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCC--cceeEEEEEEEECCceEEEEECCCCCCcc--hHHHHHHHHHHHh
Confidence 5899999999999999999999998888888998 99999999999999999999999987322 2234467778888
Q ss_pred HhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLG 279 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~g 279 (607)
++..||++|+|+|++++.+..+.++.+++++. ++|+++|+||+|+.... ....+++.+++++++++||++|.|
T Consensus 99 ~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~--~~pvilV~NK~D~~~~~-----~~~~e~~~lg~~~~~~iSA~~g~g 171 (456)
T 4dcu_A 99 AMDEADVIIFMVNGREGVTAADEEVAKILYRT--KKPVVLAVNKLDNTEMR-----ANIYDFYSLGFGEPYPISGTHGLG 171 (456)
T ss_dssp HHHHCSEEEEEEESSSCSCHHHHHHHHHHTTC--CSCEEEEEECC--------------CCSGGGSSSSEEECCTTTCTT
T ss_pred hHhhCCEEEEEEeCCCCCChHHHHHHHHHHHc--CCCEEEEEECccchhhh-----hhHHHHHHcCCCceEEeecccccc
Confidence 99999999999999999999999999999875 88999999999987532 223345677888899999999999
Q ss_pred hHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCce
Q 007334 280 MTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLT 359 (607)
Q Consensus 280 i~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT 359 (607)
+++|++.+.+.++.. . ........++|+++|.+|||||||+|+|++.+...+++++|||
T Consensus 172 v~~L~~~i~~~l~~~-----------~----------~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt 230 (456)
T 4dcu_A 172 LGDLLDAVAEHFKNI-----------P----------ETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTT 230 (456)
T ss_dssp HHHHHHHHHTTGGGS-----------C----------SSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC-----
T ss_pred hHHHHHHHHhhcccc-----------c----------ccccccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeE
Confidence 999999998766431 0 0011224689999999999999999999998889999999999
Q ss_pred eeeEEEEEEEcCeEEEEEecCCCccc-ccccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEE
Q 007334 360 RDSVRVHFEYQGRTVYLVDTAGWLQR-EKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLV 428 (607)
Q Consensus 360 ~~~~~~~~~~~~~~~~liDTpG~~~~-~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~i 428 (607)
++.....+.+++..+.||||||+.+. ......+.+....+..+++.||++|+|+|++++ .....++|+|
T Consensus 231 ~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~i 310 (456)
T 4dcu_A 231 RDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVV 310 (456)
T ss_dssp -CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEE
T ss_pred EEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEE
Confidence 99988889999999999999999876 334456788888888899999999999999885 2345789999
Q ss_pred EEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 007334 429 VIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWLR 508 (607)
Q Consensus 429 vv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~~l~~~l~ 508 (607)
+|+||||+.+.... ..+.+ .+.+.+.+....++|++++||++|.|++++|+.+.+.+.++..+++++.||+|+.
T Consensus 311 lv~NK~Dl~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~~~t~~ln~~l~ 384 (456)
T 4dcu_A 311 IVVNKWDAVDKDES--TMKEF----EENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSLRVQTNVLNDVIM 384 (456)
T ss_dssp EEEECGGGSCCCSS--HHHHH----HHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred EEEEChhcCCCchH--HHHHH----HHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHHhcccCCHHHHHHHHH
Confidence 99999999865332 11222 2334444555567899999999999999999999999999999999999999999
Q ss_pred HHHHhCCCC-CCCCcCcEEEEeecCCCCCEEEEEecCCCCCCHHHHHHHHHHhHhhCCCCceeEEEEEeec
Q 007334 509 KVMGRHSWK-DQSAQPKIKYFTQVKARPPTFVAFLSGKKTLSDAELRFLTKSLKEDFDLGGIPIRITQRSV 578 (607)
Q Consensus 509 ~~~~~~~~~-~~~~~~ki~~~~q~~~~pp~f~~~~n~~~~l~~~y~r~l~~~~~~~~~~~g~pi~~~~~~~ 578 (607)
+++..+++| ..++++|++|++|+..+||+|++|+|.|+.++++|+|||+|+||+.|||.|+||+|.||.+
T Consensus 385 ~~~~~~~pp~~~~~~~ki~y~~q~~~~pp~~~~~~n~~~~~~~~y~r~l~~~~r~~~~~~g~p~~~~~~~~ 455 (456)
T 4dcu_A 385 DAVAMNPTPTHNGSRLKIYYATQVSVKPPSFVVFVNDPELMHFSYERFLENRIRDAFGFEGTPIKIFARAR 455 (456)
T ss_dssp HHHHHSCCCEETTEECCEEEEEEEETTTTEEEEEESCGGGSCHHHHHHHHHHHHHHHCCTTCCCEEEEEC-
T ss_pred HHHHhCCCCCCCCceeeEEEEecCCCCCCEEEEEecCcccCCHHHHHHHHHHHHHhCCCCceeEEEEEecC
Confidence 999988887 5789999999999999999999999999999999999999999999999999999999965
No 3
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=100.00 E-value=1.2e-70 Score=594.86 Aligned_cols=423 Identities=31% Similarity=0.502 Sum_probs=330.3
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANV 200 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 200 (607)
|+|+|||+||||||||+|+|++.+.+++++.|| +|+|..++.+.+.+..+.+|||||++.... +.+...+..++..+
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g--~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~-~~~~~~~~~~~~~~ 78 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEG--VTRDPVQDTVEWYGKTFKLVDTCGVFDNPQ-DIISQKMKEVTLNM 78 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC----------------CCSEEEEEETTEEEEEEECTTTTSSGG-GCCCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCC--CccceeeEEEEECCeEEEEEECCCcccccc-chHHHHHHHHHHHH
Confidence 789999999999999999999998888899998 999999999999999999999999984321 11223466778889
Q ss_pred hhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHH-HHHHhcCCCCcEEeecCCCCC
Q 007334 201 LAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAA-AESLMLGFGDPIAISAETGLG 279 (607)
Q Consensus 201 ~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~-~~~~~~~~~~~i~iSA~~g~g 279 (607)
+++||++++|+|++++.+..+.++.+|+++. ++|+++|+||+|+... ..... .+++.+++.+++++||++|.|
T Consensus 79 ~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~--~~p~ilv~NK~D~~~~----~~~~~~~~~~~lg~~~~~~iSA~~g~g 152 (439)
T 1mky_A 79 IREADLVLFVVDGKRGITKEDESLADFLRKS--TVDTILVANKAENLRE----FEREVKPELYSLGFGEPIPVSAEHNIN 152 (439)
T ss_dssp HTTCSEEEEEEETTTCCCHHHHHHHHHHHHH--TCCEEEEEESCCSHHH----HHHHTHHHHGGGSSCSCEECBTTTTBS
T ss_pred HHhCCEEEEEEECCCCCCHHHHHHHHHHHHc--CCCEEEEEeCCCCccc----cHHHHHHHHHhcCCCCEEEEeccCCCC
Confidence 9999999999999999999998899999876 7899999999998642 01222 455678887899999999999
Q ss_pred hHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCce
Q 007334 280 MTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLT 359 (607)
Q Consensus 280 i~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT 359 (607)
+++|++.|.+.+++.. .. ..+..+....++|+++|+||||||||+|+|+|.....+++++|+|
T Consensus 153 v~~L~~~i~~~l~~~~---------~~--------~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT 215 (439)
T 1mky_A 153 LDTMLETIIKKLEEKG---------LD--------LESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTT 215 (439)
T ss_dssp HHHHHHHHHHHHHHTT---------CC--------SSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC---
T ss_pred HHHHHHHHHHhccccc---------cc--------chhccccccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCc
Confidence 9999999988775410 00 000001123589999999999999999999999888999999999
Q ss_pred eeeEEEEEEEcCeEEEEEecCCCcccccc--cCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcE
Q 007334 360 RDSVRVHFEYQGRTVYLVDTAGWLQREKE--KGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGL 427 (607)
Q Consensus 360 ~~~~~~~~~~~~~~~~liDTpG~~~~~~~--~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ 427 (607)
+++..+.+.++|..+.+|||||+.+.... ...+.+....+..++..+|++++|+|++++ .....++|+
T Consensus 216 ~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ 295 (439)
T 1mky_A 216 RDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRAS 295 (439)
T ss_dssp ---CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEE
T ss_pred CCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCE
Confidence 99999999999999999999998655221 223445556667788999999999999864 223468999
Q ss_pred EEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHH
Q 007334 428 VVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWL 507 (607)
Q Consensus 428 ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~~l~~~l 507 (607)
++|+||||+.+.... ..+. +...+.+.+....++|++++||++|.|++++|+.+.+.+.++..+++|+.||+||
T Consensus 296 ilv~NK~Dl~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~i~t~~ln~~l 369 (439)
T 1mky_A 296 VVVFNKWDLVVHREK--RYDE----FTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASYTTKVPSSAINSAL 369 (439)
T ss_dssp EEEEECGGGSTTGGG--CHHH----HHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred EEEEECccCCCchhh--HHHH----HHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHhhcccCCHHHHHHHH
Confidence 999999999865321 1111 2223444455556789999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCCCcCcEEEEeecCCCCCEEEEEecCCCCCCHHHHHHHHHHhHh-hCCCCceeEEEEEeec
Q 007334 508 RKVMGRHSWKDQSAQPKIKYFTQVKARPPTFVAFLSGKKTLSDAELRFLTKSLKE-DFDLGGIPIRITQRSV 578 (607)
Q Consensus 508 ~~~~~~~~~~~~~~~~ki~~~~q~~~~pp~f~~~~n~~~~l~~~y~r~l~~~~~~-~~~~~g~pi~~~~~~~ 578 (607)
.+++..+++| +++|++|++|+..+||+|++|+|.++.++++|+|||+|+||+ .|+|.|+||++.||.+
T Consensus 370 ~~~~~~~~~~---~~~ki~y~~q~~~~p~~~~~~~n~~~~~~~~y~r~l~~~~r~~~~~~~~~pi~~~~~~~ 438 (439)
T 1mky_A 370 QKVLAFTNLP---RGLKIFFGVQVDIKPPTFLFFVNSIEKVKNPQKIFLRKLIRDYVFPFEGSPIFLKFKRS 438 (439)
T ss_dssp HHHHTTCCCS---TTCCEEEEEEEETTTTEEEEEESCSTTCCHHHHHHHHHHHHHHTCCCTTCCCEEEEEEC
T ss_pred HHHHHcCCCC---CCcEEEEEEecCCCCCEEEEEEcCcccCCHHHHHHHHHHHHHhhCCCCCCCEEEEEecC
Confidence 9999988877 889999999999999999999999999999999999999999 9999999999999965
No 4
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.95 E-value=1.6e-28 Score=257.42 Aligned_cols=252 Identities=16% Similarity=0.103 Sum_probs=166.3
Q ss_pred CCCCcchhhhhhhhhhhhhccccchhhhhhhhhcccccccccccccccc------cCccCCCCCCCCCCccccccccccc
Q 007334 33 NLCKPFNFTLNNYSHIRASAAGSLYQVGSSLKCNLLPEVPRGFCGVVQN------EALEDTHVEPEPDGVVEDHKVKPLY 106 (607)
Q Consensus 33 ~~~~~~~~~l~~~~~~~~~~~~~~~qv~la~l~~~~~~~~~~~~~~~~~------~g~g~~~~~~~~~~~~~~~~~~~l~ 106 (607)
+..+.+..+|.. .+.||.+.++++|+++|++.|.+|++ +.|.+++++ +|+|++.++.+++.+ +.++..++
T Consensus 82 ~v~dr~~lil~i-~~~ra~t~~~~~q~~la~l~~~~~rl-~~~~~l~~~~~~i~~~g~ge~~~e~~~~~~--~~~i~~l~ 157 (364)
T 2qtf_A 82 EVLDKILLLLEI-FALHAGSKEAKMQIELARLKYELPII-KETYTKSKIGEQQGPLGAGTYGVESTIKFY--KRRINKLM 157 (364)
T ss_dssp EEECHHHHHHHH-HHHHCCSHHHHHHHHHHHHHHHHHHH-HHC---------------------CHHHHH--HHHHHHHH
T ss_pred ceeehHhHHHHH-HHhhCcccchhHHHHHHHHhhhchhh-hhhhHHHHhcCCCCcCCcCHHHHHHHHHHH--HHHHHHHH
Confidence 345555556555 56889999988999999999999999 889888877 578899999888888 78888877
Q ss_pred cCCccccc--------ccccCCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCC
Q 007334 107 EKPVDFTK--------IDINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSA 178 (607)
Q Consensus 107 ~~~~~~~~--------~~~~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTp 178 (607)
+++..+.+ +.+.+.+.|+|+|++|||||||+|+|++... .+.+.++ +|+|...+.+.+.+..+.+||||
T Consensus 158 ~~l~~~~~~r~~~r~~r~~~~~~~V~lvG~~naGKSTLln~L~~~~~-~~~~~~~--~T~d~~~~~i~~~g~~v~l~DT~ 234 (364)
T 2qtf_A 158 KELESIKIFKEKSIESNKRNNIPSIGIVGYTNSGKTSLFNSLTGLTQ-KVDTKLF--TTMSPKRYAIPINNRKIMLVDTV 234 (364)
T ss_dssp HHHHHHHC-------------CCEEEEECBTTSSHHHHHHHHHCC--------------CCSCEEEEEETTEEEEEEECC
T ss_pred HHHHHHHHHHHHHHHhhhhcCCcEEEEECCCCCCHHHHHHHHHCCCc-cccCCcc--cccCCEEEEEEECCEEEEEEeCC
Confidence 76654432 2234567799999999999999999998764 5666777 89999999999999999999999
Q ss_pred CCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCC--CHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcH
Q 007334 179 GLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGL--HPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSL 254 (607)
Q Consensus 179 G~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~--~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~ 254 (607)
|+....+++.. +.+..+...+..+|++++|+|++++. ..... .+.+++... ..+.|+++|+||+|+........
T Consensus 235 G~i~~lp~~lv--e~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~ 312 (364)
T 2qtf_A 235 GFIRGIPPQIV--DAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKK 312 (364)
T ss_dssp CBCSSCCGGGH--HHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHH
T ss_pred CchhcCCHHHH--HHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHH
Confidence 99766565443 33556777899999999999998875 22222 244556554 24789999999999976431100
Q ss_pred HHHH-HHHHhc-C-CCCcEEeecCCCCChHHHHHHhccchHH
Q 007334 255 AGAA-AESLML-G-FGDPIAISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 255 ~~~~-~~~~~~-~-~~~~i~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
.... .....+ . ..+++++||++|.|+++|++.|.+.+..
T Consensus 313 ~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 313 LDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp HHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhcc
Confidence 0111 111222 1 1156899999999999999999887654
No 5
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.91 E-value=2e-25 Score=217.53 Aligned_cols=190 Identities=18% Similarity=0.162 Sum_probs=121.5
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCce-eecCCCCceeeeEEEEEEEc-C--eEEEEEecCCCcccccccCcchhHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRV-LVGPEAGLTRDSVRVHFEYQ-G--RTVYLVDTAGWLQREKEKGPASLSVMQ 398 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~-~~~~~~gtT~~~~~~~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~ 398 (607)
..++|+++|.+|||||||+|+|++.... ...+..+++.... .+... + ..+.||||||+.+... .
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~~~~l~Dt~G~~~~~~----------~ 77 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPV--TFLDDQGNVIKFNVWDTAGQEKKAV----------L 77 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEE--EEEBTTSCEEEEEEEEECSGGGTSC----------C
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEE--EEEeCCCcEEEEEEEecCCchhhch----------H
Confidence 4589999999999999999999965422 2334444433322 22222 2 5788999999754421 1
Q ss_pred HHHHHhhccEEEEEeccchhh--------------HHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCC
Q 007334 399 SRKNLMRAHVVALVLDAEEVR--------------AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQV 464 (607)
Q Consensus 399 ~~~~i~~ad~~llViD~~~~~--------------~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (607)
...++..+|++|+|+|+++.. ....++|+++|+||+|+.+.... ..+....+...
T Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-----------~~~~~~~~~~~ 146 (218)
T 4djt_A 78 KDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKI-----------SKKLVMEVLKG 146 (218)
T ss_dssp CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----C-----------CHHHHHHHTTT
T ss_pred HHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccc-----------CHHHHHHHHHH
Confidence 124567899999999998761 11236899999999999764221 11222233344
Q ss_pred CCCCEEEcccCCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCCCCcCcEEEEeecCCCCCE
Q 007334 465 TGIPVVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWLRKVMGRHSWKDQSAQPKIKYFTQVKARPPT 537 (607)
Q Consensus 465 ~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ki~~~~q~~~~pp~ 537 (607)
.+++++++||++|.|++++|+.+.+.+.+...+.++..++.++.+++..+++|..+ .+++|++|+..+|||
T Consensus 147 ~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~y~~q~~~~pp~ 217 (218)
T 4djt_A 147 KNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFVSNVNLEPTEVNYDYHSPEES--KYIDYMEQASKMAPE 217 (218)
T ss_dssp CCCEEEEEBTTTTBTTTHHHHHHHHHHHCCTTCCBCSCCCCCBCCCCCCCCCC--------------------
T ss_pred cCCcEEEEecCCCCCHHHHHHHHHHHHhcccccccccccCcCCCccccCccCchhh--hhHHHHHHHhccCCC
Confidence 57899999999999999999999999998888888888888887776666655432 369999999999996
No 6
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.90 E-value=5.3e-23 Score=211.44 Aligned_cols=170 Identities=23% Similarity=0.359 Sum_probs=135.5
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC-CeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG-DLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
...|+|+|.||||||||+|+|++.+.++++..++ +|++...+..... +.++.+|||||+............+...+.
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~--tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~ 87 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAG--TTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAK 87 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSC--CCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccccCCCCC--ceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHH
Confidence 3589999999999999999999999888888887 9999988888888 999999999999753321334445667778
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHHH-HHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhc-CCCCcEEeecCC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLEV-GKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLML-GFGDPIAISAET 276 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~~-~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~-~~~~~i~iSA~~ 276 (607)
.++..+|++++|+|++++.+..+..+ .+.+... +.|+++|+||+|+.................+ .+.+++++||++
T Consensus 88 ~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~--~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~ 165 (308)
T 3iev_A 88 QSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL--NKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALK 165 (308)
T ss_dssp HHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG--CCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTT
T ss_pred HHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc--CCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCC
Confidence 89999999999999999999888776 6777664 7899999999999833322222222333344 345789999999
Q ss_pred CCChHHHHHHhccchHH
Q 007334 277 GLGMTELYEALRPSVED 293 (607)
Q Consensus 277 g~gi~eL~~~i~~~l~~ 293 (607)
|.|+++|++.|.+.+++
T Consensus 166 g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 166 GANLDELVKTILKYLPE 182 (308)
T ss_dssp TBSHHHHHHHHHHHSCB
T ss_pred CCCHHHHHHHHHHhCcc
Confidence 99999999999887653
No 7
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.89 E-value=4e-23 Score=211.29 Aligned_cols=165 Identities=24% Similarity=0.295 Sum_probs=131.0
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANV 200 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 200 (607)
..|+|||+||||||||+|+|++.+.++++..++ +|++...+.....+.++.+|||||+... ...+...+...+..+
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~--tTr~~i~~i~~~~~~~l~l~DTpG~~~~--~~~l~~~~~~~~~~~ 83 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQ--TTRKRLRGILTEGRRQIVFVDTPGLHKP--MDALGEFMDQEVYEA 83 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSC--CCCSCEEEEEEETTEEEEEEECCCCCCC--CSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeecCCCC--ceeEEEEEEEEeCCcEEEEecCccccch--hhHHHHHHHHHHHHH
Confidence 479999999999999999999998887777777 8888888777778899999999999842 223333456677889
Q ss_pred hhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCCh
Q 007334 201 LAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGM 280 (607)
Q Consensus 201 ~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi 280 (607)
+..+|++++|+|++++.+..+..+.+.+++..++.|+++|+||+|+...... .......+ .++.+++++||++|.|+
T Consensus 84 l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~--~~~~~~~~iSA~~g~gv 160 (301)
T 1wf3_A 84 LADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEE-AMKAYHEL--LPEAEPRMLSALDERQV 160 (301)
T ss_dssp TSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHH-HHHHHHHT--STTSEEEECCTTCHHHH
T ss_pred HhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHH-HHHHHHHh--cCcCcEEEEeCCCCCCH
Confidence 9999999999999999888887777777765457899999999999764220 11111121 34456799999999999
Q ss_pred HHHHHHhccchH
Q 007334 281 TELYEALRPSVE 292 (607)
Q Consensus 281 ~eL~~~i~~~l~ 292 (607)
++|++.|.+.++
T Consensus 161 ~~l~~~l~~~l~ 172 (301)
T 1wf3_A 161 AELKADLLALMP 172 (301)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHhcc
Confidence 999999987664
No 8
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.89 E-value=4.2e-23 Score=190.31 Aligned_cols=159 Identities=35% Similarity=0.574 Sum_probs=120.3
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANV 200 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 200 (607)
++|+++|.+|||||||+|+|++.....+...++ +|.+.....+...+..+.+|||||+..... ....+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---~~~~~~~~~~~~ 76 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPG--VTRDLKEGVVETDRGRFLLVDTGGLWSGDK---WEKKIQEKVDRA 76 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-------------CCEEEEEEETTEEEEEEECGGGCSSSS---CCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCC--ceecceEEEEEeCCceEEEEECCCCCCccc---hHHHHHHHHHHH
Confidence 689999999999999999999987655566666 888888888888899999999999984321 112344566778
Q ss_pred hhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCCh
Q 007334 201 LAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGM 280 (607)
Q Consensus 201 ~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi 280 (607)
+..+|++++|+|++++.+..+..+.++++.. +.|+++|+||+|+...... ...+...++.+++++||++|.|+
T Consensus 77 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv 149 (161)
T 2dyk_A 77 LEDAEVVLFAVDGRAELTQADYEVAEYLRRK--GKPVILVATKVDDPKHELY-----LGPLYGLGFGDPIPTSSEHARGL 149 (161)
T ss_dssp TTTCSEEEEEEESSSCCCHHHHHHHHHHHHH--TCCEEEEEECCCSGGGGGG-----CGGGGGGSSCSCEECBTTTTBSH
T ss_pred HHhCCEEEEEEECCCcccHhHHHHHHHHHhc--CCCEEEEEECcccccchHh-----HHHHHhCCCCCeEEEecccCCCh
Confidence 8999999999999998888877788888775 7899999999999865221 11222566667899999999999
Q ss_pred HHHHHHhccch
Q 007334 281 TELYEALRPSV 291 (607)
Q Consensus 281 ~eL~~~i~~~l 291 (607)
+++++.|.+.+
T Consensus 150 ~~l~~~l~~~l 160 (161)
T 2dyk_A 150 EELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99999987654
No 9
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.89 E-value=1e-22 Score=198.89 Aligned_cols=175 Identities=19% Similarity=0.220 Sum_probs=129.4
Q ss_pred ccccCCCEEEEecCCCCchhHHHHHhhccc-eeeeccCCCCceeeeeEEEEee-eCCeeEEEecCCCCccccCchhHHHH
Q 007334 115 IDINLLPTVMIIGRPNVGKSALFNRLIRRR-EALVYNTPDDHVTRDIREGLAK-LGDLRFKVLDSAGLETEATSGSILDR 192 (607)
Q Consensus 115 ~~~~~~~~V~ivG~~nvGKSSL~n~L~~~~-~~~v~~~~~~~~T~~~~~~~~~-~~~~~~~liDTpG~~~~~~~~~~~~~ 192 (607)
.+....++|+|+|.+|||||||+|+|++.. .+.+...++ +|++....... ..+..+.||||||+............
T Consensus 24 ~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~ 101 (223)
T 4dhe_A 24 LPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPG--RTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAH 101 (223)
T ss_dssp SCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCC--SCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHH
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCC--cccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHH
Confidence 334456899999999999999999999986 456777777 78887666655 56789999999998754333333334
Q ss_pred HHHHHHHHhhc---cCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCc--HHHHHHHHHhc---
Q 007334 193 TAGMTANVLAK---TQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGS--LAGAAAESLML--- 264 (607)
Q Consensus 193 ~~~~~~~~~~~---ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~--~~~~~~~~~~~--- 264 (607)
+...+..++.. +|++++|+|++++.+..+..+.+++... ++|+++|+||+|+....... .......+...
T Consensus 102 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~--~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~ 179 (223)
T 4dhe_A 102 WEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPT--GKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDA 179 (223)
T ss_dssp HHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGG--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhc--CCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhc
Confidence 44555556655 7889999999999888888888888875 78999999999998643211 11111222221
Q ss_pred ---CCCCcEEeecCCCCChHHHHHHhccchHH
Q 007334 265 ---GFGDPIAISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 265 ---~~~~~i~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
...+++++||++|.|+++|++.|.+.++.
T Consensus 180 ~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 180 GYAGKLTVQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp TCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred ccCCCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence 33368999999999999999999887754
No 10
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.88 E-value=1e-21 Score=211.94 Aligned_cols=170 Identities=21% Similarity=0.378 Sum_probs=122.5
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCch-hHHHHH-HHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSG-SILDRT-AGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~-~~~~~~-~~~~ 197 (607)
.++|+|||+||||||||+|+|++.....+++.++ +|++...+.+.++|..+.+|||||+....... .....+ ...+
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~g--tT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~ 257 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPG--TTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRV 257 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC--------CCEEEEETTEEEEESSCSCC-----------CCSCCHHH
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcccccCCCCC--CcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHH
Confidence 5799999999999999999999998888899998 99999989999999999999999985322110 000000 1123
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHH----HHHHhcCCCCcEEee
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAA----AESLMLGFGDPIAIS 273 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~----~~~~~~~~~~~i~iS 273 (607)
..++..+|++++|+|++++.+..+..+...+... ++|+++|+||+|+...+.....+.. ..+...+..+++++|
T Consensus 258 ~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~--~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 335 (439)
T 1mky_A 258 VDSIEKADVVVIVLDATQGITRQDQRMAGLMERR--GRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTS 335 (439)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT--TCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECB
T ss_pred HHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHc--CCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEE
Confidence 5678899999999999999888887777777765 7899999999999864332222211 122223444789999
Q ss_pred cCCCCChHHHHHHhccchHH
Q 007334 274 AETGLGMTELYEALRPSVED 293 (607)
Q Consensus 274 A~~g~gi~eL~~~i~~~l~~ 293 (607)
|++|.|+++|++.|.+.+..
T Consensus 336 A~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 336 ADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp TTTTBSHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999876654
No 11
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.88 E-value=2.9e-23 Score=218.36 Aligned_cols=235 Identities=18% Similarity=0.162 Sum_probs=157.4
Q ss_pred HHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCc--HHH-HHHHHHhcCC--
Q 007334 192 RTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGS--LAG-AAAESLMLGF-- 266 (607)
Q Consensus 192 ~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~--~~~-~~~~~~~~~~-- 266 (607)
++.+....+...++++++|+|++++......++.++ ..++|+++|+||+|+.+..... ... ....+...|+
T Consensus 60 ~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~----l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~ 135 (369)
T 3ec1_A 60 DFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRF----AADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCP 135 (369)
T ss_dssp HHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHH----CTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHH----hCCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCc
Confidence 455555566688999999999998664332223333 3478999999999998653211 111 1222455666
Q ss_pred CCcEEeecCCCCChHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhc
Q 007334 267 GDPIAISAETGLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQ 346 (607)
Q Consensus 267 ~~~i~iSA~~g~gi~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~ 346 (607)
.+++.+||++|.|+++|++.|.+... ..+|+++|.||||||||+|+|++
T Consensus 136 ~~v~~iSA~~g~gi~~L~~~I~~~~~-------------------------------~~~i~~vG~~nvGKStliN~L~~ 184 (369)
T 3ec1_A 136 VDVCLVSAAKGIGMAKVMEAINRYRE-------------------------------GGDVYVVGCTNVGKSTFINRIIE 184 (369)
T ss_dssp SEEEECBTTTTBTHHHHHHHHHHHHT-------------------------------TSCEEEECCTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhcc-------------------------------cCcEEEEcCCCCchHHHHHHHHh
Confidence 36799999999999999998865431 24799999999999999999998
Q ss_pred C-----CceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCccccc-ccCcchhHHHHHHHHH---hhccEEEEEeccch
Q 007334 347 E-----DRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREK-EKGPASLSVMQSRKNL---MRAHVVALVLDAEE 417 (607)
Q Consensus 347 ~-----~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~-~~~~~~~~~~~~~~~i---~~ad~~llViD~~~ 417 (607)
. ....+++.||||++..... + +..+.++||||+..... ..... ......+ ...|.+++++|+..
T Consensus 185 ~~~~~~~~~~~~~~~gtT~~~~~~~--~-~~~~~liDtPG~~~~~~~~~~l~----~~~l~~~~~~~~i~~~~~~l~~~~ 257 (369)
T 3ec1_A 185 EATGKGNVITTSYFPGTTLDMIEIP--L-ESGATLYDTPGIINHHQMAHFVD----ARDLKIITPKREIHPRVYQLNEGQ 257 (369)
T ss_dssp HHHHTTCCCEEEECTTSSCEEEEEE--C-STTCEEEECCSCCCCSSGGGGSC----TTTHHHHSCSSCCCCEEEEECTTE
T ss_pred hccCCccceeecCCCCeEEeeEEEE--e-CCCeEEEeCCCcCcHHHHHHHHh----HHHHHHHhcccccCceEEEEcCCc
Confidence 7 5678899999999876543 2 23489999999976521 11111 1122333 57899999999943
Q ss_pred h----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCH
Q 007334 418 V----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGR 480 (607)
Q Consensus 418 ~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv 480 (607)
. .....+.|+++++||+|..+........+.+.+. + +..+.+.++....++
T Consensus 258 ~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~--------~----g~~l~p~~~~~~~~~ 318 (369)
T 3ec1_A 258 TLFFGGLARLDYIKGGRRSFVCYMANELTVHRTKLEKADSLYANQ--------L----GELLSPPSKRYAAEF 318 (369)
T ss_dssp EEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEGGGHHHHHHHH--------B----TTTBCSSCGGGTTTC
T ss_pred eEEECCEEEEEEccCCCceEEEEecCCcccccccHHHHHHHHHHh--------c----CCccCCCCchhhhhc
Confidence 2 1223467999999999988764443333322221 1 335566666655554
No 12
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.88 E-value=6.3e-23 Score=192.53 Aligned_cols=148 Identities=26% Similarity=0.417 Sum_probs=114.9
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
..+|+++|++|||||||+|+|++.....+++++++|++.....+.+++..+.+|||||+.+.. ...+.+....+..++
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~--~~~~~~~~~~~~~~~ 81 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS--DEVERIGIERAWQEI 81 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCS--SHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccch--hHHHHHHHHHHHHHH
Confidence 479999999999999999999987666788899999999988899999999999999986531 111222334455678
Q ss_pred hhccEEEEEeccchh----------hHHh---cCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEE
Q 007334 404 MRAHVVALVLDAEEV----------RAVE---EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVV 470 (607)
Q Consensus 404 ~~ad~~llViD~~~~----------~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 470 (607)
+.+|++++|+|+++. .... .++|+++|+||+|+.+.... ++...+.+++
T Consensus 82 ~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~------------------~~~~~~~~~~ 143 (172)
T 2gj8_A 82 EQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLG------------------MSEVNGHALI 143 (172)
T ss_dssp HTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCE------------------EEEETTEEEE
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchhh------------------hhhccCCceE
Confidence 899999999999874 1111 36899999999998643110 0111356899
Q ss_pred EcccCCCCCHHHHHHHHHHHH
Q 007334 471 FTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 471 ~iSA~~g~gv~~l~~~i~~~~ 491 (607)
++||++|.|++++|+.+.+.+
T Consensus 144 ~~SA~~g~gv~~l~~~l~~~~ 164 (172)
T 2gj8_A 144 RLSARTGEGVDVLRNHLKQSM 164 (172)
T ss_dssp ECCTTTCTTHHHHHHHHHHHC
T ss_pred EEeCCCCCCHHHHHHHHHHHh
Confidence 999999999999999988764
No 13
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.88 E-value=7.4e-24 Score=229.24 Aligned_cols=226 Identities=21% Similarity=0.239 Sum_probs=129.6
Q ss_pred chhhhhhhhhccccccccccc-ccccc--------cCccCCCCCCCCCCccccccccccccCCcccccc-----cccCCC
Q 007334 56 LYQVGSSLKCNLLPEVPRGFC-GVVQN--------EALEDTHVEPEPDGVVEDHKVKPLYEKPVDFTKI-----DINLLP 121 (607)
Q Consensus 56 ~~qv~la~l~~~~~~~~~~~~-~~~~~--------~g~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~ 121 (607)
..+.+++++...+++....|. .+... .-+.+...+..++.+ ..++..+++++..+... ..+...
T Consensus 157 ~~~~a~~~l~G~ls~~i~~lr~~L~~~~a~iea~iDf~eedi~~~~~~~l--~~~i~~l~~~l~~~~~~~~~~~~~r~~~ 234 (476)
T 3gee_A 157 AYRTAVSQMKGDLSVRLGGLREQLIRSCALIELELDFSEEDVEFQSRDEL--TMQIETLRSEVNRLIDSYQHGRIVSEGV 234 (476)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHTHHHHHHHTTTTCSSCCSSCCSSSCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCE
T ss_pred HHHHHHHhhCCcHHHHHHHHHHHHHHHHHHhheecCCCcccccchhHHHH--HHHHHHHHHHHHHHHHHHHhhHhhcCCC
Confidence 378888888877775433332 22222 112222222333344 44555555555443321 112246
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHh
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVL 201 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 201 (607)
+|+|+|+||||||||+|+|++.+.+++++.++ +|++.....+.+++..+.+|||||+.... +.........+..++
T Consensus 235 kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~g--tT~d~~~~~i~~~g~~l~liDT~G~~~~~--~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 235 STVIAGKPNAGKSTLLNTLLGQERAIVSHMPG--TTRDYIEECFIHDKTMFRLTDTAGLREAG--EEIEHEGIRRSRMKM 310 (476)
T ss_dssp EEEEECCTTSSHHHHHHHCC--------------------CEEEEETTEEEEEEC----------------------CCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCcccCCCCC--ceEEEEEEEEEECCeEEEEEECCCCCcch--hHHHHHHHHHHHhhc
Confidence 79999999999999999999988788888888 99999999999999999999999997421 111111234556788
Q ss_pred hccCEEEEEEecCCCCCHhHH-HHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCCh
Q 007334 202 AKTQFAIFMIDVRSGLHPLDL-EVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGM 280 (607)
Q Consensus 202 ~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi 280 (607)
..+|++++|+|++++.+..+. ....++.... ++|+++|+||+|+....... ...+...++.+++++||++|.|+
T Consensus 311 ~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~-~~piIvV~NK~Dl~~~~~~~----~~~l~~~~~~~~i~vSAktg~GI 385 (476)
T 3gee_A 311 AEADLILYLLDLGTERLDDELTEIRELKAAHP-AAKFLTVANKLDRAANADAL----IRAIADGTGTEVIGISALNGDGI 385 (476)
T ss_dssp SSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT-TSEEEEEEECTTSCTTTHHH----HHHHHHHHTSCEEECBTTTTBSH
T ss_pred ccCCEEEEEEECCCCcchhhhHHHHHHHHhcC-CCCEEEEEECcCCCCccchh----HHHHHhcCCCceEEEEECCCCCH
Confidence 999999999999998887542 2344555543 78999999999998754321 11222223347899999999999
Q ss_pred HHHHHHhccchH
Q 007334 281 TELYEALRPSVE 292 (607)
Q Consensus 281 ~eL~~~i~~~l~ 292 (607)
++|+++|.+.+.
T Consensus 386 ~eL~~~i~~~~~ 397 (476)
T 3gee_A 386 DTLKQHMGDLVK 397 (476)
T ss_dssp HHHHHHHTHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988765
No 14
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.88 E-value=3.6e-23 Score=217.45 Aligned_cols=209 Identities=19% Similarity=0.181 Sum_probs=139.6
Q ss_pred HHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHH----HHHHHhcCCC
Q 007334 192 RTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGA----AAESLMLGFG 267 (607)
Q Consensus 192 ~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~----~~~~~~~~~~ 267 (607)
++.+....+.+.+|++++|+|++++. ..+...+.+...++|+++|+||+|+.+.... .+.. ...+...|+.
T Consensus 58 ~f~~~l~~i~~~~~~il~VvD~~d~~----~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~-~~~~~~~l~~~~~~~g~~ 132 (368)
T 3h2y_A 58 DFLRILNGIGKSDALVVKIVDIFDFN----GSWLPGLHRFVGNNKVLLVGNKADLIPKSVK-HDKVKHWMRYSAKQLGLK 132 (368)
T ss_dssp HHHHHHHHHHHSCCEEEEEEETTSHH----HHCCTTHHHHSSSSCEEEEEECGGGSCTTSC-HHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhccCcEEEEEEECCCCc----ccHHHHHHHHhCCCcEEEEEEChhcCCcccC-HHHHHHHHHHHHHHcCCC
Confidence 45555666777888999999998732 2233334444457899999999999864321 1111 1224456663
Q ss_pred --CcEEeecCCCCChHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhh
Q 007334 268 --DPIAISAETGLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALL 345 (607)
Q Consensus 268 --~~i~iSA~~g~gi~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~ 345 (607)
+++.+||++|.|+++|++.|.+... ..+|+++|.+|||||||+|+|+
T Consensus 133 ~~~v~~iSA~~g~gi~~L~~~l~~~~~-------------------------------~~~i~~vG~~nvGKStliN~L~ 181 (368)
T 3h2y_A 133 PEDVFLISAAKGQGIAELADAIEYYRG-------------------------------GKDVYVVGCTNVGKSTFINRMI 181 (368)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHHT-------------------------------TSCEEEEEBTTSSHHHHHHHHH
T ss_pred cccEEEEeCCCCcCHHHHHhhhhhhcc-------------------------------cceEEEecCCCCChhHHHHHHH
Confidence 6799999999999999998865321 2479999999999999999999
Q ss_pred cCC------ceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHH---HhhccEEEEEeccc
Q 007334 346 QED------RVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN---LMRAHVVALVLDAE 416 (607)
Q Consensus 346 ~~~------~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~---i~~ad~~llViD~~ 416 (607)
+.. ...+++.||||++.....+ . ..+.++||||+.+.... .+.+. ...... ....+.+++++|+.
T Consensus 182 ~~~~~~~~~~~~~~~~~gtT~~~~~~~~--~-~~~~liDtPG~~~~~~~--~~~l~-~~~l~~~~~~~~i~~~~~~l~~~ 255 (368)
T 3h2y_A 182 KEFSDETENVITTSHFPGTTLDLIDIPL--D-EESSLYDTPGIINHHQM--AHYVG-KQSLKLITPTKEIKPMVFQLNEE 255 (368)
T ss_dssp HHHTTSCSSCCEEECCC----CEEEEES--S-SSCEEEECCCBCCTTSG--GGGSC-HHHHHHHSCSSCCCCEEEEECTT
T ss_pred hhhccccccceecCCCCCeecceEEEEe--c-CCeEEEeCCCcCcHHHH--HHHhh-HHHHHHhccccccCceEEEEcCC
Confidence 852 4568899999998765432 2 23889999999765211 11111 111222 24678899999984
Q ss_pred hh----------hHHhcCCcEEEEEeCccCCCCcCc
Q 007334 417 EV----------RAVEEGRGLVVIVNKMDLLSGRQN 442 (607)
Q Consensus 417 ~~----------~~~~~~~p~ivv~NK~Dl~~~~~~ 442 (607)
.. .....+.|+++++||+|.++....
T Consensus 256 ~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~~~~~ 291 (368)
T 3h2y_A 256 QTLFFSGLARFDYVSGGRRAFTCHFSNRLTIHRTKL 291 (368)
T ss_dssp EEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEH
T ss_pred CEEEEcceEEEEEecCCCceEEEEecCccccccccH
Confidence 32 122346899999999999876443
No 15
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.88 E-value=1e-23 Score=228.35 Aligned_cols=220 Identities=21% Similarity=0.288 Sum_probs=155.4
Q ss_pred chhhhhhhhhccccccccccc-ccccc--------cCccCCCCC-CCCCCccccccccccccCCcccccc-----cccCC
Q 007334 56 LYQVGSSLKCNLLPEVPRGFC-GVVQN--------EALEDTHVE-PEPDGVVEDHKVKPLYEKPVDFTKI-----DINLL 120 (607)
Q Consensus 56 ~~qv~la~l~~~~~~~~~~~~-~~~~~--------~g~g~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~ 120 (607)
.+|++++++.+.+++..+.|. .+.+. ..+++ ++ ...+ + ..++..++.++..+... ..+..
T Consensus 169 ~~~~a~~~l~g~l~~~~~~~r~~l~~~~~~ie~~idf~ee--i~~~~~~-i--~~~~~~l~~eL~~l~~~~~~~~~~r~~ 243 (482)
T 1xzp_A 169 SLKLSLRNLKGGLRDFVDSLRRELIEVLAEIRVELDYPDE--IETNTGE-V--VTRLERIKEKLTEELKKADAGILLNRG 243 (482)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHSTTT--CCCCHHH-H--HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcchhHhHHHHHHHHHHHHHHHHhhhcCCCCcc--ccchHHH-H--HHHHHHHHHHHHHHHHhhhhhhhccCC
Confidence 378999999998887765553 22111 22332 22 2222 4 45555565555543211 11123
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCc-cccCchhHHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLE-TEATSGSILDRTAGMTAN 199 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~-~~~~~~~~~~~~~~~~~~ 199 (607)
++|+|+|+||||||||+|+|++.+.+++.+.++ +|+|.....+.+++..+.+|||||+. ......+. .....+..
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~g--TT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~--~gi~~~~~ 319 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPG--TTRDVISEEIVIRGILFRIVDTAGVRSETNDLVER--LGIERTLQ 319 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSC--CSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCC--CCHHHHHH
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCC--eeeeeEEEEEecCCeEEEEEECCCccccchhhHHH--HHHHHHHH
Confidence 689999999999999999999988888888888 99999999999999999999999997 33211000 11244567
Q ss_pred HhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLG 279 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~g 279 (607)
++..+|++|+|+|++++.+.++.++.+.+ .++|+++|+||+|+... ...+.. ......+. +++++||++|.|
T Consensus 320 ~~~~aD~vl~VvD~s~~~s~~~~~il~~l----~~~piivV~NK~DL~~~--~~~~~~-~~~~~~~~-~~i~iSAktg~G 391 (482)
T 1xzp_A 320 EIEKADIVLFVLDASSPLDEEDRKILERI----KNKRYLVVINKVDVVEK--INEEEI-KNKLGTDR-HMVKISALKGEG 391 (482)
T ss_dssp HHHHCSEEEEEEETTSCCCHHHHHHHHHH----TTSSEEEEEEECSSCCC--CCHHHH-HHHHTCST-TEEEEEGGGTCC
T ss_pred HhhcccEEEEEecCCCCCCHHHHHHHHHh----cCCCEEEEEECcccccc--cCHHHH-HHHhcCCC-cEEEEECCCCCC
Confidence 88999999999999999888776665554 36899999999999753 222222 22222222 689999999999
Q ss_pred hHHHHHHhccchH
Q 007334 280 MTELYEALRPSVE 292 (607)
Q Consensus 280 i~eL~~~i~~~l~ 292 (607)
+++|++.|.+.+.
T Consensus 392 i~eL~~~l~~~~~ 404 (482)
T 1xzp_A 392 LEKLEESIYRETQ 404 (482)
T ss_dssp HHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988654
No 16
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.88 E-value=1e-21 Score=186.88 Aligned_cols=170 Identities=24% Similarity=0.301 Sum_probs=123.9
Q ss_pred cccCCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHH
Q 007334 116 DINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAG 195 (607)
Q Consensus 116 ~~~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~ 195 (607)
+....++|+++|.+|||||||+|+|++.....+...++ +|++..... .+.++.+|||||+............+..
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~--~t~~~~~~~---~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 93 (195)
T 3pqc_A 19 PPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPG--KTRSINFYL---VNSKYYFVDLPGYGYAKVSKKERMLWKR 93 (195)
T ss_dssp CCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCC--CCCCEEEEE---ETTTEEEEECCCBSSSCCCHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCC--CccCeEEEE---ECCcEEEEECCCCccccCChhhHHHHHH
Confidence 33456899999999999999999999987665666666 666655433 3457999999997643322222223444
Q ss_pred HHHHHhhcc---CEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCc--HHHHHHHHHhcCCCCcE
Q 007334 196 MTANVLAKT---QFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGS--LAGAAAESLMLGFGDPI 270 (607)
Q Consensus 196 ~~~~~~~~a---d~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~--~~~~~~~~~~~~~~~~i 270 (607)
.+..++..+ |++++|+|++.+.+..+..+.+|+... +.|+++|+||+|+....... .+.....+...+..+++
T Consensus 94 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~--~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (195)
T 3pqc_A 94 LVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL--NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTII 171 (195)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT--TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEE
T ss_pred HHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc--CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceE
Confidence 445555555 999999999998888888888899887 78999999999998543211 12222233333444789
Q ss_pred EeecCCCCChHHHHHHhccchH
Q 007334 271 AISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 271 ~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
++||++|.|+++++++|.+.++
T Consensus 172 ~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 172 PTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHC
T ss_pred EEecCCCCCHHHHHHHHHHHhh
Confidence 9999999999999999987664
No 17
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.88 E-value=7.7e-22 Score=188.20 Aligned_cols=170 Identities=23% Similarity=0.287 Sum_probs=115.4
Q ss_pred ccccCCCEEEEecCCCCchhHHHHHhhccc-eeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHH
Q 007334 115 IDINLLPTVMIIGRPNVGKSALFNRLIRRR-EALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRT 193 (607)
Q Consensus 115 ~~~~~~~~V~ivG~~nvGKSSL~n~L~~~~-~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~ 193 (607)
.+....++|+++|.+|||||||+|+|++.. ...+...++ +|.+...... +.++.+|||||+............+
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~--~t~~~~~~~~---~~~~~l~Dt~G~~~~~~~~~~~~~~ 92 (195)
T 1svi_A 18 YPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPG--KTQTLNFYII---NDELHFVDVPGYGFAKVSKSEREAW 92 (195)
T ss_dssp SCCSCCCEEEEEEBTTSSHHHHHHHHHTC---------------CCEEEEEE---TTTEEEEECCCBCCCSSCHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCC--ceeeEEEEEE---CCcEEEEECCCCCccccCHHHHHHH
Confidence 344457899999999999999999999876 344555555 6666554432 3479999999976443322222344
Q ss_pred HHHHHHHhhcc---CEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcH-HHHHHHHHh-cCCCC
Q 007334 194 AGMTANVLAKT---QFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSL-AGAAAESLM-LGFGD 268 (607)
Q Consensus 194 ~~~~~~~~~~a---d~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~-~~~~~~~~~-~~~~~ 268 (607)
......++..+ |++++|+|++++.+..+.++.+|+... +.|+++|+||+|+...+.... ......... ....+
T Consensus 93 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~--~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 170 (195)
T 1svi_A 93 GRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYY--GIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDE 170 (195)
T ss_dssp HHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT--TCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSE
T ss_pred HHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHc--CCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCc
Confidence 45556666666 999999999999999888788888775 789999999999987543211 111111111 12236
Q ss_pred cEEeecCCCCChHHHHHHhccch
Q 007334 269 PIAISAETGLGMTELYEALRPSV 291 (607)
Q Consensus 269 ~i~iSA~~g~gi~eL~~~i~~~l 291 (607)
++++||++|.|++++++.|.+.+
T Consensus 171 ~~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 171 LILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHH
T ss_pred eEEEEccCCCCHHHHHHHHHHHh
Confidence 79999999999999999988655
No 18
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.88 E-value=2.2e-22 Score=201.17 Aligned_cols=153 Identities=23% Similarity=0.306 Sum_probs=115.7
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH-
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL- 403 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i- 403 (607)
.+|+++|.||||||||+|+|+|.. ..++++||+|++.....+.+++..+.||||||+.+..............+..++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~-~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~ 80 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNAN-QRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVI 80 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTS-EEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHh
Confidence 379999999999999999999874 788999999999999999999999999999998766321100011112233445
Q ss_pred -hhccEEEEEeccchh--------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEccc
Q 007334 404 -MRAHVVALVLDAEEV--------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSA 474 (607)
Q Consensus 404 -~~ad~~llViD~~~~--------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA 474 (607)
..+|++|+|+|+++. ...+.++|+++|+||+|+.+........+.+. +.+ ++|++++||
T Consensus 81 ~~~~d~vi~VvDas~~~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~--------~~l----g~~vi~~SA 148 (256)
T 3iby_A 81 DLEYDCIINVIDACHLERHLYLTSQLFELGKPVVVALNMMDIAEHRGISIDTEKLE--------SLL----GCSVIPIQA 148 (256)
T ss_dssp HSCCSEEEEEEEGGGHHHHHHHHHHHTTSCSCEEEEEECHHHHHHTTCEECHHHHH--------HHH----CSCEEECBG
T ss_pred hCCCCEEEEEeeCCCchhHHHHHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHHH--------HHc----CCCEEEEEC
Confidence 789999999999986 23345899999999999875433222222221 111 579999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 007334 475 LEGRGRIAVMHQVIDT 490 (607)
Q Consensus 475 ~~g~gv~~l~~~i~~~ 490 (607)
++|.|++++++.+.+.
T Consensus 149 ~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 149 HKNIGIPALQQSLLHC 164 (256)
T ss_dssp GGTBSHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHhh
Confidence 9999999999999875
No 19
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.88 E-value=2.7e-22 Score=188.24 Aligned_cols=160 Identities=26% Similarity=0.328 Sum_probs=120.1
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANV 200 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 200 (607)
.+|+|+|.+|||||||+|+|++.....+...++ +|++.....+.+++..+.+|||||+..... .........+..+
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG--TTRDVLREHIHIDGMPLHIIDTAGLREASD--EVERIGIERAWQE 80 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTT--CCCSCEEEEEEETTEEEEEEECCCCSCCSS--HHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcceeeCCCC--ceeceeeEEEEECCeEEEEEECCCcccchh--HHHHHHHHHHHHH
Confidence 589999999999999999999987666666777 888888888888898999999999974321 1111122334567
Q ss_pred hhccCEEEEEEecCCCCCHhHHHHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCC
Q 007334 201 LAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLG 279 (607)
Q Consensus 201 ~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~g 279 (607)
+..+|++++|+|++++.+..+..+...+.+. ..++|+++|+||+|+....... ....+. +++++||++|.|
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~-------~~~~~~-~~~~~SA~~g~g 152 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGM-------SEVNGH-ALIRLSARTGEG 152 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCEE-------EEETTE-EEEECCTTTCTT
T ss_pred HHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchhhh-------hhccCC-ceEEEeCCCCCC
Confidence 8999999999999998876665555555543 2368999999999986432110 001122 679999999999
Q ss_pred hHHHHHHhccchH
Q 007334 280 MTELYEALRPSVE 292 (607)
Q Consensus 280 i~eL~~~i~~~l~ 292 (607)
++++++.|.+.+.
T Consensus 153 v~~l~~~l~~~~~ 165 (172)
T 2gj8_A 153 VDVLRNHLKQSMG 165 (172)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhh
Confidence 9999999987653
No 20
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.87 E-value=2.8e-22 Score=188.35 Aligned_cols=161 Identities=19% Similarity=0.216 Sum_probs=121.4
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
.++|+++|.+|||||||+|+|++.... ....+. ++.+.....+.+.+ ..+.+|||||..... ..+
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~ 75 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADNTFS-GSYITT--IGVDFKIRTVEINGEKVKLQIWDTAGQERFR----------TIT 75 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSCC----CCTTT--BSEEEEEEEEEETTEEEEEEEEEETTGGGCS----------SCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC-CccCCC--ceeEEEEEEEEECCEEEEEEEEcCCCchhhh----------hhH
Confidence 579999999999999999999987654 223343 67777777777777 679999999987322 223
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAET 276 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~ 276 (607)
..++..+|++++|+|++++.+..+. .+...+....++.|+++|+||+|+...+..............+. +++++||++
T Consensus 76 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 154 (181)
T 3tw8_B 76 STYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGI-QLFETSAKE 154 (181)
T ss_dssp GGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-CEEECBTTT
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCC-eEEEEECCC
Confidence 4567899999999999986555442 23333444456789999999999987665555555556666676 889999999
Q ss_pred CCChHHHHHHhccchHHH
Q 007334 277 GLGMTELYEALRPSVEDY 294 (607)
Q Consensus 277 g~gi~eL~~~i~~~l~~~ 294 (607)
|.|++++++.|.+.+...
T Consensus 155 ~~gi~~l~~~l~~~~~~~ 172 (181)
T 3tw8_B 155 NVNVEEMFNCITELVLRA 172 (181)
T ss_dssp TBSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999999877654
No 21
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.87 E-value=2.1e-22 Score=203.50 Aligned_cols=156 Identities=25% Similarity=0.290 Sum_probs=117.4
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchh--HHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASL--SVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~--~~~~~~~ 401 (607)
.++|+++|.+|||||||+|+|+|.. ..+++.+|+|++.....+.+.+..+.||||||+.+.......... .+.+...
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~-~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~ 81 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTC-EEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC-cccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence 4799999999999999999999886 789999999999999999999999999999998776321111111 1122222
Q ss_pred HHhhccEEEEEeccchh--------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcc
Q 007334 402 NLMRAHVVALVLDAEEV--------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTS 473 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~--------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iS 473 (607)
....+|++|+|+|+++. ...+.++|+|+|+||+|+.+........+.+. .. .++|++++|
T Consensus 82 ~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~----~~--------lg~~~i~~S 149 (274)
T 3i8s_A 82 LSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALS----AR--------LGCPVIPLV 149 (274)
T ss_dssp HHTCCSEEEEEEEGGGHHHHHHHHHHHHHHTCCEEEEEECHHHHHHTTEEECHHHHH----HH--------HTSCEEECC
T ss_pred hhcCCCEEEEEecCCChHHHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHH----Hh--------cCCCEEEEE
Confidence 34689999999999986 33456899999999999875433222222221 11 157999999
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q 007334 474 ALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 474 A~~g~gv~~l~~~i~~~~~ 492 (607)
|++|.|++++++.+.+.+.
T Consensus 150 A~~g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 150 STRGRGIEALKLAIDRYKA 168 (274)
T ss_dssp CGGGHHHHHHHHHHHTCCC
T ss_pred cCCCCCHHHHHHHHHHHHh
Confidence 9999999999999877543
No 22
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.87 E-value=4.2e-22 Score=193.86 Aligned_cols=159 Identities=18% Similarity=0.258 Sum_probs=117.9
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
++|+|||.+|||||||+++++...+.... .|. +..+.....+...+ ..+.||||+|++ ++...+.
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~~~f~~~~-~~T--ig~d~~~k~~~~~~~~v~l~iwDtaGqe----------~~~~l~~ 80 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTY-QAT--IGIDFLSKTMYLEDRTIRLQLWDTAGLE----------RFRSLIP 80 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC-------------CEEEEEECSSCEEEEEEECCSCTT----------TCGGGHH
T ss_pred EEEEEECcCCcCHHHHHHHHHhCCCCCCc-CCc--cceEEEEEEEEecceEEEEEEEECCCch----------hhhhHHH
Confidence 68999999999999999999987653211 121 33444444444444 578999999998 4445567
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHH-HHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAET 276 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~ 276 (607)
.+++.+|++++|+|+++..+..... +...+... .++.|+++|+||+|+...+.+..++....+...+. .++++||++
T Consensus 81 ~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~-~~~e~SAkt 159 (216)
T 4dkx_A 81 SYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNV-MFIETSAKA 159 (216)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEEEEBTTT
T ss_pred HHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCC-eeEEEeCCC
Confidence 7899999999999999877766522 33333332 56789999999999998777777777777778887 789999999
Q ss_pred CCChHHHHHHhccchHH
Q 007334 277 GLGMTELYEALRPSVED 293 (607)
Q Consensus 277 g~gi~eL~~~i~~~l~~ 293 (607)
|.||+++|+.|.+.+..
T Consensus 160 g~nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 160 GYNVKQLFRRVAAALPG 176 (216)
T ss_dssp TBSHHHHHHHHHHHC--
T ss_pred CcCHHHHHHHHHHHHHh
Confidence 99999999999876643
No 23
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.87 E-value=1.1e-21 Score=201.60 Aligned_cols=160 Identities=29% Similarity=0.376 Sum_probs=122.9
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEc-CeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQ-GRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+-.|+++|+||||||||+|+|+|.....+++.+++|++.....+..+ +.++.||||||+.+..............+..+
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~ 89 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQS 89 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHH
Confidence 45799999999999999999999988889999999999999988888 99999999999876531112223334456678
Q ss_pred HhhccEEEEEeccchh------h-----HHhcCCcEEEEEeCccCC-CCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEE
Q 007334 403 LMRAHVVALVLDAEEV------R-----AVEEGRGLVVIVNKMDLL-SGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVV 470 (607)
Q Consensus 403 i~~ad~~llViD~~~~------~-----~~~~~~p~ivv~NK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 470 (607)
+..+|++++|+|++++ . ....++|+++|+||+|+. +........+ .+.+.+. ...+++
T Consensus 90 l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~--------~l~~~~~--~~~~i~ 159 (308)
T 3iev_A 90 LEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLID--------EIHKKHP--ELTEIV 159 (308)
T ss_dssp HHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHH--------HHHHHCT--TCCCEE
T ss_pred hhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHH--------HHHHhcc--CCCeEE
Confidence 8899999999999875 1 112479999999999998 3322222222 2222221 246899
Q ss_pred EcccCCCCCHHHHHHHHHHHHHH
Q 007334 471 FTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 471 ~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
++||++|.|++++++.+.+.+.+
T Consensus 160 ~vSA~~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 160 PISALKGANLDELVKTILKYLPE 182 (308)
T ss_dssp ECBTTTTBSHHHHHHHHHHHSCB
T ss_pred EEeCCCCCCHHHHHHHHHHhCcc
Confidence 99999999999999999987653
No 24
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.87 E-value=6.4e-22 Score=183.42 Aligned_cols=160 Identities=18% Similarity=0.150 Sum_probs=101.4
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
..+|+++|.+|||||||+|+|++.........++ +|.+... .+......+.+|||||+. ++......
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~i~D~~g~~----------~~~~~~~~ 68 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAG--HTYDRSI-VVDGEEASLMVYDIWEQD----------GGRWLPGH 68 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC------------CEEEEEE-EETTEEEEEEEEECC---------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccc--cceEEEE-EECCEEEEEEEEECCCCc----------cchhhhhh
Confidence 4689999999999999999999877655555555 5554222 222234578999999987 44455567
Q ss_pred HhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAET 276 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~ 276 (607)
++..+|++++|+|++++.+.... .+...+... ..+.|+++|+||+|+...+....+.........+. +++++||++
T Consensus 69 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 147 (166)
T 3q72_A 69 CMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDC-KFIETSAAL 147 (166)
T ss_dssp ----CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTC-EEEECBGGG
T ss_pred hhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCC-cEEEeccCC
Confidence 78999999999999986554442 233333332 24789999999999987666555555555666666 789999999
Q ss_pred CCChHHHHHHhccchHH
Q 007334 277 GLGMTELYEALRPSVED 293 (607)
Q Consensus 277 g~gi~eL~~~i~~~l~~ 293 (607)
|.|++++++.|.+.+..
T Consensus 148 ~~gi~~l~~~l~~~~~~ 164 (166)
T 3q72_A 148 HHNVQALFEGVVRQIRL 164 (166)
T ss_dssp TBSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999877643
No 25
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.87 E-value=5.9e-22 Score=185.21 Aligned_cols=161 Identities=18% Similarity=0.160 Sum_probs=107.8
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
.++|+++|.+|||||||+|+|++.........++ ++.. ...+.+++ ..+.+|||||+... ++....
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~D~~g~~~~--------~~~~~~ 71 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLG--EDVY--ERTLTVDGEDTTLVVVDTWEAEKL--------DKSWSQ 71 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-----CCCSS--SSEE--EEEEEETTEEEEEEEECCC---------------CHHH
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCCccccCccc--ccee--EEEEEECCEEEEEEEEecCCCCcc--------chhhhH
Confidence 3689999999999999999999987655544444 3332 33344444 47899999998721 122334
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeec
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISA 274 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA 274 (607)
..++..+|++++|+|++++.+.... .+...+... ..+.|+++|+||+|+...+....++........+. +++++||
T Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa 150 (175)
T 2nzj_A 72 ESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDC-KFIETSA 150 (175)
T ss_dssp HHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTS-EEEECBT
T ss_pred HhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCC-eEEEEec
Confidence 5567889999999999986554442 233334432 23789999999999987655544444444555665 7899999
Q ss_pred CCCCChHHHHHHhccchHH
Q 007334 275 ETGLGMTELYEALRPSVED 293 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~~l~~ 293 (607)
++|.|++++++.|.+.+..
T Consensus 151 ~~g~gi~~l~~~l~~~~~~ 169 (175)
T 2nzj_A 151 TLQHNVAELFEGVVRQLRL 169 (175)
T ss_dssp TTTBSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999887754
No 26
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.87 E-value=7.8e-23 Score=214.69 Aligned_cols=169 Identities=22% Similarity=0.297 Sum_probs=121.5
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
..++|+++|++|||||||+|+|++... .+.+.++ +|.+.....+...+..+.+|||||+...........+ .....
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~-~~~~~~~--~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~-~~~~~ 241 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKP-EIASYPF--TTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIE-KQAIL 241 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCC-EEECCTT--CSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHH-HHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCC--eeeceeEEEEEecCceEEEEeCCCccccchhhhhHHH-HHHHH
Confidence 467999999999999999999999763 4556666 8888888887778889999999999754332111001 12223
Q ss_pred HHhhccCEEEEEEecCCCC--CHhH-HHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 199 NVLAKTQFAIFMIDVRSGL--HPLD-LEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~--~~~~-~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
.....+|++++|+|++++. +..+ ..+...+.....++|+++|+||+|+..... .+.....+...+. +++++||+
T Consensus 242 ~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~-~~~~iSA~ 318 (357)
T 2e87_A 242 ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEEN--IKRLEKFVKEKGL-NPIKISAL 318 (357)
T ss_dssp GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHH--HHHHHHHHHHTTC-CCEECBTT
T ss_pred HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHH--HHHHHHHHHhcCC-CeEEEeCC
Confidence 3445799999999998765 4443 334555555444789999999999976422 1222233334454 78999999
Q ss_pred CCCChHHHHHHhccchHHH
Q 007334 276 TGLGMTELYEALRPSVEDY 294 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~~~ 294 (607)
+|+|+++|+++|.+.+...
T Consensus 319 ~g~gi~~l~~~i~~~l~~~ 337 (357)
T 2e87_A 319 KGTGIDLVKEEIIKTLRPL 337 (357)
T ss_dssp TTBTHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHH
Confidence 9999999999999877653
No 27
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.87 E-value=7.8e-22 Score=197.13 Aligned_cols=161 Identities=24% Similarity=0.293 Sum_probs=120.7
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANV 200 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 200 (607)
++|+++|.||||||||+|+|++.+ ..+++.|+ +|.+...+.+.+.+..+.+|||||+....+...........+..+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~-~~v~~~pg--~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~ 78 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNAN-QRVGNWPG--VTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQS 78 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTS-EEEEECTT--SSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CCccCCCC--ceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHH
Confidence 689999999999999999999986 45778888 999999999999999999999999985543210000111233445
Q ss_pred h--hccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCC
Q 007334 201 L--AKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGL 278 (607)
Q Consensus 201 ~--~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~ 278 (607)
+ ..+|++++|+|+++. .....+..++.+. +.|+++|+||+|+......... .......+|. +++++||++|.
T Consensus 79 ~~~~~~d~vi~VvDas~~--~~~~~l~~~l~~~--~~pvilv~NK~Dl~~~~~~~~~-~~~l~~~lg~-~vi~~SA~~g~ 152 (256)
T 3iby_A 79 VIDLEYDCIINVIDACHL--ERHLYLTSQLFEL--GKPVVVALNMMDIAEHRGISID-TEKLESLLGC-SVIPIQAHKNI 152 (256)
T ss_dssp HHHSCCSEEEEEEEGGGH--HHHHHHHHHHTTS--CSCEEEEEECHHHHHHTTCEEC-HHHHHHHHCS-CEEECBGGGTB
T ss_pred HhhCCCCEEEEEeeCCCc--hhHHHHHHHHHHc--CCCEEEEEEChhcCCcCCcHHH-HHHHHHHcCC-CEEEEECCCCC
Confidence 5 889999999999872 3334466667665 7899999999999865432211 1223344566 88999999999
Q ss_pred ChHHHHHHhccc
Q 007334 279 GMTELYEALRPS 290 (607)
Q Consensus 279 gi~eL~~~i~~~ 290 (607)
|+++|++.|.+.
T Consensus 153 gi~el~~~i~~~ 164 (256)
T 3iby_A 153 GIPALQQSLLHC 164 (256)
T ss_dssp SHHHHHHHHHTC
T ss_pred CHHHHHHHHHhh
Confidence 999999999865
No 28
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.86 E-value=5.1e-21 Score=187.91 Aligned_cols=170 Identities=16% Similarity=0.140 Sum_probs=115.9
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
.++|+|+|.+|||||||+|+|++.... +...++ +|++.........+..+.+|||||+.......... ........
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~~~~-~~~~~~--~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~-~~~~~~~~ 104 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRANVD-VQSYSF--TTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNT-IEMTTITA 104 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTTCEE-EECC-------CEEEEEEEETTEEEEEEECTTTTTSCGGGCCH-HHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCC--cceeeeeeeeecCCCeEEEEECCCCcCcccchhhh-HHHHHHHH
Confidence 579999999999999999999998765 455555 88888888888888999999999996322111100 01122234
Q ss_pred HhhccCEEEEEEecCCCCCHhH---HHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHH---HHHHHHHhcC-CCCcEEe
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLD---LEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLA---GAAAESLMLG-FGDPIAI 272 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~---~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~---~~~~~~~~~~-~~~~i~i 272 (607)
++..+|++|+|+|++++.+... ..+...+....++.|+++|+||+|+...+..... .........+ ..+++++
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSF 184 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEE
Confidence 5788899999999998766442 2334444443347899999999999875543322 1222223333 1278999
Q ss_pred ecCCCCChHHHHHHhccchHH
Q 007334 273 SAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 273 SA~~g~gi~eL~~~i~~~l~~ 293 (607)
||++|.|++++++.|.+.+.+
T Consensus 185 SA~~g~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 185 STLTGVGVEQAKITACELLKN 205 (228)
T ss_dssp CTTTCTTHHHHHHHHHHHHHH
T ss_pred ecccCCCHHHHHHHHHHHHHH
Confidence 999999999999999987754
No 29
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=4.3e-22 Score=189.69 Aligned_cols=157 Identities=20% Similarity=0.204 Sum_probs=111.3
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC--CeeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG--DLRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+|+|.+|||||||+|+|++..... ...+. .+.+.....+.+. +..+.+|||||+.. +...+
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~t--~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~ 81 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFDP-ELAAT--IGVDFKVKTISVDGNKAKLAIWDTAGQER----------FRTLT 81 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCT-TCCCC--CSEEEEEEEEEETTEEEEEEEEEECSSGG----------GCCSH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCc-cCCCc--cceEEEEEEEEECCeEEEEEEEeCCCchh----------hhhhh
Confidence 3689999999999999999999876421 11222 3334433444443 46799999999873 22334
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhh-----CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEe
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH-----APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAI 272 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~-----~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~i 272 (607)
..++..+|++|+|+|++++.+..+ +..|+... ..+.|+++|+||+|+... ..........+...+. .++++
T Consensus 82 ~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~-~~~~~ 157 (195)
T 1x3s_A 82 PSYYRGAQGVILVYDVTRRDTFVK--LDNWLNELETYCTRNDIVNMLVGNKIDKENR-EVDRNEGLKFARKHSM-LFIEA 157 (195)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHT--HHHHHHHHTTCCSCSCCEEEEEEECTTSSSC-CSCHHHHHHHHHHTTC-EEEEC
T ss_pred HHHhccCCEEEEEEECcCHHHHHH--HHHHHHHHHHhcCcCCCcEEEEEECCcCccc-ccCHHHHHHHHHHcCC-EEEEe
Confidence 567899999999999988655443 23444433 146899999999999543 3334444555556666 78999
Q ss_pred ecCCCCChHHHHHHhccchHH
Q 007334 273 SAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 273 SA~~g~gi~eL~~~i~~~l~~ 293 (607)
||++|.|++++++.|.+.+.+
T Consensus 158 Sa~~~~gi~~l~~~l~~~~~~ 178 (195)
T 1x3s_A 158 SAKTCDGVQCAFEELVEKIIQ 178 (195)
T ss_dssp CTTTCTTHHHHHHHHHHHHHT
T ss_pred cCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999887653
No 30
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=1.7e-21 Score=183.12 Aligned_cols=161 Identities=19% Similarity=0.221 Sum_probs=114.0
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+++|.+|||||||+|+|++.........+. ++.+.....+...+ ..+.+|||||+. ++...+
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t--~~~~~~~~~~~~~~~~~~~~~~Dt~G~~----------~~~~~~ 77 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFIST--VGIDFRNKVLDVDGVKVKLQMWDTAGQE----------RFRSVT 77 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCC--CSCEEEEEEEEETTEEEEEEEEECCCC-----------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCc--eeeEEEEEEEEECCEEEEEEEEeCCCcH----------HHHHHH
Confidence 4689999999999999999999877532222333 55555555555555 479999999987 444556
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..++..+|++++|+|++++.+..+. .+...+... ..+.|+++|+||+|+...+....+.........++ +++++||+
T Consensus 78 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 156 (180)
T 2g6b_A 78 HAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGL-PFMETSAK 156 (180)
T ss_dssp -CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTC-CEEECCTT
T ss_pred HHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCC-eEEEEeCC
Confidence 6788999999999999986554442 233333333 24789999999999987655444444455555676 78999999
Q ss_pred CCCChHHHHHHhccchHH
Q 007334 276 TGLGMTELYEALRPSVED 293 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~~ 293 (607)
+|.|++++++.|.+.+.+
T Consensus 157 ~~~gi~~l~~~l~~~~~~ 174 (180)
T 2g6b_A 157 TGLNVDLAFTAIAKELKR 174 (180)
T ss_dssp TCTTHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999877653
No 31
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.86 E-value=2.3e-22 Score=189.52 Aligned_cols=159 Identities=16% Similarity=0.096 Sum_probs=114.2
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
.++|+|+|.+|||||||+|+|++... ...... ++.+.....+..++ ..+.+|||||+.... ...
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~~--~~~~~~--t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~ 71 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQF--VDSYDP--TIENTFTKLITVNGQEYHLQLVDTAGQDEYS----------IFP 71 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSC--CSCCCT--TCCEEEEEEEEETTEEEEEEEEECCCCCTTC----------CCC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCC--CCCCCC--CccccEEEEEEECCEEEEEEEEeCCCchhhh----------HHH
Confidence 46899999999999999999997654 233333 44444455555666 567999999988332 223
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHHH-HHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeec
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISA 274 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA 274 (607)
..++..+|++++|+|++++.+..... +...+.+. ..+.|+++|+||+|+...+....+.....+...+. +++++||
T Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa 150 (181)
T 3t5g_A 72 QTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNA-AFLESSA 150 (181)
T ss_dssp GGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTC-EEEECCT
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCC-cEEEEec
Confidence 34678899999999999765554421 22222222 23789999999999987666666666666677777 7899999
Q ss_pred CCCCChHHHHHHhccchHH
Q 007334 275 ETGLGMTELYEALRPSVED 293 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~~l~~ 293 (607)
++|.|++++++.|.+.+..
T Consensus 151 ~~~~~v~~l~~~l~~~~~~ 169 (181)
T 3t5g_A 151 KENQTAVDVFRRIILEAEK 169 (181)
T ss_dssp TSHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999877653
No 32
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.86 E-value=1.4e-21 Score=197.86 Aligned_cols=175 Identities=21% Similarity=0.274 Sum_probs=118.2
Q ss_pred ecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcH
Q 007334 175 LDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSL 254 (607)
Q Consensus 175 iDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~ 254 (607)
-+.||+.. ++.+++...+..+|+|++|+|++++.+..+..+.+++ .++|.++|+||+|+.+.. ..
T Consensus 4 ~w~PGhm~---------ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l----~~kp~ilVlNK~DL~~~~--~~ 68 (282)
T 1puj_A 4 QWFPGHMA---------KARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL----KNKPRIMLLNKADKADAA--VT 68 (282)
T ss_dssp -----CTT---------HHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC----SSSCEEEEEECGGGSCHH--HH
T ss_pred cCCchHHH---------HHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH----CCCCEEEEEECcccCCHH--HH
Confidence 35677762 5678889999999999999999999888765666665 378999999999998631 11
Q ss_pred HHHHHHHHhcCCCCcEEeecCCCCChHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCC
Q 007334 255 AGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPN 334 (607)
Q Consensus 255 ~~~~~~~~~~~~~~~i~iSA~~g~gi~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~n 334 (607)
+.....+...++ +++++||++|.|+++|++.+.+.+++........ .....+++|+++|.||
T Consensus 69 ~~~~~~~~~~g~-~~i~iSA~~~~gi~~L~~~i~~~l~~~~~~~~~~-----------------~~~~~~~~v~~vG~~n 130 (282)
T 1puj_A 69 QQWKEHFENQGI-RSLSINSVNGQGLNQIVPASKEILQEKFDRMRAK-----------------GVKPRAIRALIIGIPN 130 (282)
T ss_dssp HHHHHHHHTTTC-CEEECCTTTCTTGGGHHHHHHHHHHHHHHHHHHT-----------------TCCCCCEEEEEEESTT
T ss_pred HHHHHHHHhcCC-cEEEEECCCcccHHHHHHHHHHHHHHHHHHHHhc-----------------CCCCCCceEEEEecCC
Confidence 222233334566 7899999999999999999887776432110000 0112358999999999
Q ss_pred CchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCccc
Q 007334 335 VGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQR 385 (607)
Q Consensus 335 vGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~ 385 (607)
||||||+|+|++...+.+++.||+|++.... .. +..+.++||||+...
T Consensus 131 vGKSsliN~l~~~~~~~~~~~~g~T~~~~~~--~~-~~~~~l~DtpG~~~~ 178 (282)
T 1puj_A 131 VGKSTLINRLAKKNIAKTGDRPGITTSQQWV--KV-GKELELLDTPGILWP 178 (282)
T ss_dssp SSHHHHHHHHHTSCCC------------CCE--EE-TTTEEEEECCCCCCS
T ss_pred CchHHHHHHHhcCceeecCCCCCeeeeeEEE--Ee-CCCEEEEECcCcCCC
Confidence 9999999999998888999999999987532 22 557899999999765
No 33
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.86 E-value=1.1e-21 Score=196.41 Aligned_cols=152 Identities=28% Similarity=0.370 Sum_probs=115.9
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
.++|+++|.||||||||+|+|+|.. ..++++||+|.+.....+.+++..+.||||||+....... .+. ..+..++
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~-~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~-~~e---~v~~~~~ 79 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTK-QYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSS-IDE---KIARDYL 79 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTC-EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSS-HHH---HHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCC-HHH---HHHHHHH
Confidence 4799999999999999999999875 5688999999999998898889999999999987653211 111 1122333
Q ss_pred --hhccEEEEEeccchh--------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcc
Q 007334 404 --MRAHVVALVLDAEEV--------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTS 473 (607)
Q Consensus 404 --~~ad~~llViD~~~~--------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iS 473 (607)
..+|++++|+|+++. ...+.++|+++|+||+|+.+........+.+ .+. .++|++++|
T Consensus 80 ~~~~~d~ii~V~D~t~~~~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~~~~~l--------~~~----lg~~vi~~S 147 (258)
T 3a1s_A 80 LKGDADLVILVADSVNPEQSLYLLLEILEMEKKVILAMTAIDEAKKTGMKIDRYEL--------QKH----LGIPVVFTS 147 (258)
T ss_dssp HHSCCSEEEEEEETTSCHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCBCHHHH--------HHH----HCSCEEECC
T ss_pred hhcCCCEEEEEeCCCchhhHHHHHHHHHhcCCCEEEEEECcCCCCccchHHHHHHH--------HHH----cCCCEEEEE
Confidence 479999999999875 3344689999999999986533221111222 111 157999999
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q 007334 474 ALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 474 A~~g~gv~~l~~~i~~~~~ 492 (607)
|++|.|++++|+.+.+...
T Consensus 148 A~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 148 SVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred eeCCcCHHHHHHHHHHHhh
Confidence 9999999999999988764
No 34
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.86 E-value=2.3e-21 Score=180.22 Aligned_cols=159 Identities=19% Similarity=0.157 Sum_probs=108.4
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHH-H
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAG-M 196 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~-~ 196 (607)
..+|+++|.+|||||||+|+|++.........+ .+.+.....+..++ ..+.+|||||+.. +.. .
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~ 68 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEME---NSEDTYERRIMVDKEEVTLIVYDIWEQGD----------AGGWL 68 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC---------------CEEEEEEEETTEEEEEEEECCCCC-----------------
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCC---CcCCeeeEEEEECCeEEEEEEEECCCccc----------cchhh
Confidence 368999999999999999999976654333322 45555555555555 5688999999972 222 3
Q ss_pred HHHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhhC--CCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEee
Q 007334 197 TANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKHA--PQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAIS 273 (607)
Q Consensus 197 ~~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~~--~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iS 273 (607)
...++..+|++++|+|++++.+.... .+...+.... .+.|+++|+||+|+...+....+.........+. +++++|
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~S 147 (169)
T 3q85_A 69 QDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSC-KHIETS 147 (169)
T ss_dssp -CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-EEEECB
T ss_pred hhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCC-cEEEec
Confidence 34467789999999999986544442 1222222222 3789999999999987666666666666667777 889999
Q ss_pred cCCCCChHHHHHHhccchH
Q 007334 274 AETGLGMTELYEALRPSVE 292 (607)
Q Consensus 274 A~~g~gi~eL~~~i~~~l~ 292 (607)
|++|.|++++++.|.+.+.
T Consensus 148 a~~~~~v~~l~~~l~~~i~ 166 (169)
T 3q85_A 148 AALHHNTRELFEGAVRQIR 166 (169)
T ss_dssp TTTTBSHHHHHHHHHHHHH
T ss_pred CccCCCHHHHHHHHHHHHH
Confidence 9999999999999987664
No 35
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.86 E-value=2e-21 Score=185.39 Aligned_cols=161 Identities=19% Similarity=0.196 Sum_probs=114.2
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+|+|.+|||||||+|+|++....... .+. ++.+.....+.+++ ..+.+|||||+. ++...+
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~-~~t--~~~~~~~~~~~~~~~~~~l~l~Dt~G~~----------~~~~~~ 92 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDDTFCEAC-KST--VGVDFKIKTVELRGKKIRLQIWDTAGQE----------RFNSIT 92 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC---------CC--TTEEEEEEEEEETTEEEEEEEEEECCSG----------GGHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCC-CCc--cceeEEEEEEEECCeEEEEEEEeCCCcH----------HHHHHH
Confidence 468999999999999999999987653222 222 44555555666655 579999999987 344556
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..++..+|++|+|+|++++.+..+. .+...+... ..+.|+++|+||+|+...+....+.............++++||+
T Consensus 93 ~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~ 172 (192)
T 2il1_A 93 SAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAK 172 (192)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTT
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCC
Confidence 7788999999999999987665552 233444443 34789999999999987655444444444444322378999999
Q ss_pred CCCChHHHHHHhccchHH
Q 007334 276 TGLGMTELYEALRPSVED 293 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~~ 293 (607)
+|.|++++++.|.+.+.+
T Consensus 173 ~g~gi~~l~~~l~~~i~~ 190 (192)
T 2il1_A 173 DNFNVDEIFLKLVDDILK 190 (192)
T ss_dssp TTBSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999876643
No 36
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.86 E-value=1.1e-21 Score=182.39 Aligned_cols=150 Identities=28% Similarity=0.417 Sum_probs=104.8
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH-
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL- 403 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i- 403 (607)
++|+++|++|||||||+|+|++.. ..++++||+|++.....+.+++..+.+|||||+.+..... . .. .....++
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-~-~~--~~~~~~~~ 78 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANS-I-DE--IIARDYII 78 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS-SSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSS-H-HH--HHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-eeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcc-h-hH--HHHHHHHh
Confidence 689999999999999999999763 4567888999988888888889999999999987653111 0 00 1122333
Q ss_pred -hhccEEEEEeccchh--------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEccc
Q 007334 404 -MRAHVVALVLDAEEV--------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSA 474 (607)
Q Consensus 404 -~~ad~~llViD~~~~--------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA 474 (607)
..+|++++|+|+++. .....++|+++|+||+|+..........+. +.+. .+++++++||
T Consensus 79 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~--------~~~~----~~~~~~~~SA 146 (165)
T 2wji_A 79 NEKPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDK--------LEKI----LGVKVVPLSA 146 (165)
T ss_dssp HHCCSEEEEEEETTCHHHHHHHHHHHHHTTCCEEEEEECHHHHHHTTCCCCHHH--------HHHH----HTSCEEECBG
T ss_pred cCCCCEEEEEecCCchhHhHHHHHHHHhcCCCEEEEEEchHhccccChhhHHHH--------HHHH----hCCCEEEEEc
Confidence 379999999999875 122358999999999998643211111111 1111 1468999999
Q ss_pred CCCCCHHHHHHHHHHHH
Q 007334 475 LEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 475 ~~g~gv~~l~~~i~~~~ 491 (607)
++|.|++++|+.+.+.+
T Consensus 147 ~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 147 AKKMGIEELKKAISIAV 163 (165)
T ss_dssp GGTBSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999987643
No 37
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.86 E-value=3.3e-21 Score=185.42 Aligned_cols=161 Identities=19% Similarity=0.182 Sum_probs=116.9
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+|+|.+|||||||+|+|++..+.. ....+++.+.....+.+++ ..+.+|||||+. ++...+
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~ 95 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTGAFSE---RQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE----------RFRTIT 95 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-------------CEEEEEEEETTEEEEEEEECCTTCG----------GGHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCCCCC---CCCCCcceEEEEEEEEECCEEEEEEEEECCCcH----------hHHHHH
Confidence 4689999999999999999999876432 1221244555556666666 589999999987 344566
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..++..+|++|+|+|++++.+..+. .+...+... ..+.|+++|+||+|+...+....++....+...++..++++||+
T Consensus 96 ~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~ 175 (201)
T 2hup_A 96 QSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAK 175 (201)
T ss_dssp HHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTT
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCC
Confidence 7789999999999999876554442 233333333 35789999999999987555555555555666676578999999
Q ss_pred CCCChHHHHHHhccchHH
Q 007334 276 TGLGMTELYEALRPSVED 293 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~~ 293 (607)
+|.|++++++.|.+.+.+
T Consensus 176 ~g~gi~~l~~~l~~~i~~ 193 (201)
T 2hup_A 176 DSSNVEEAFLRVATELIM 193 (201)
T ss_dssp TTBSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999887754
No 38
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.86 E-value=1.7e-21 Score=199.21 Aligned_cols=152 Identities=25% Similarity=0.295 Sum_probs=117.5
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHh
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLM 404 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~ 404 (607)
.+|+++|+||||||||+|+|++....++++.|+||++.....+..++.++.||||||+.+... .........+..+++
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~--~l~~~~~~~~~~~l~ 85 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMD--ALGEFMDQEVYEALA 85 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCS--HHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhh--HHHHHHHHHHHHHHh
Confidence 579999999999999999999988778899999999988888888899999999999875421 122233445667889
Q ss_pred hccEEEEEeccchh---------hHH-hc--CCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEc
Q 007334 405 RAHVVALVLDAEEV---------RAV-EE--GRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFT 472 (607)
Q Consensus 405 ~ad~~llViD~~~~---------~~~-~~--~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i 472 (607)
.+|++++|+|++++ ... .. ++|+++|+||+|+.+... ... ..+.+. ....+++++
T Consensus 86 ~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~--~~~--------~~~~~~---~~~~~~~~i 152 (301)
T 1wf3_A 86 DVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPE--EAM--------KAYHEL---LPEAEPRML 152 (301)
T ss_dssp SCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHH--HHH--------HHHHHT---STTSEEEEC
T ss_pred cCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchH--HHH--------HHHHHh---cCcCcEEEE
Confidence 99999999999864 112 22 799999999999976421 011 111111 234579999
Q ss_pred ccCCCCCHHHHHHHHHHHH
Q 007334 473 SALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 473 SA~~g~gv~~l~~~i~~~~ 491 (607)
||++|.|++++++.+.+.+
T Consensus 153 SA~~g~gv~~l~~~l~~~l 171 (301)
T 1wf3_A 153 SALDERQVAELKADLLALM 171 (301)
T ss_dssp CTTCHHHHHHHHHHHHTTC
T ss_pred eCCCCCCHHHHHHHHHHhc
Confidence 9999999999999998754
No 39
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.86 E-value=1.3e-21 Score=210.80 Aligned_cols=171 Identities=19% Similarity=0.313 Sum_probs=123.8
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHH-HHH
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTA-GMT 197 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~-~~~ 197 (607)
..++|+++|+||||||||+|+|++.....+++.++ +|++.....+.+++..+.||||||+............+. ..+
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~g--tT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 251 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAG--TTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRA 251 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC-----------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCC--ceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHH
Confidence 35799999999999999999999988877888888 999998888888999999999999964332111111222 224
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHH----HhcCCCCcEEee
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAES----LMLGFGDPIAIS 273 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~----~~~~~~~~i~iS 273 (607)
..+++.||++++|+|++++.+.++..+...+.+. ++|+++|+||+|+...+.....+..... ......+++++|
T Consensus 252 ~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~--~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~S 329 (436)
T 2hjg_A 252 LKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEA--GKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMS 329 (436)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT--TCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECC
T ss_pred HHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHc--CCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEe
Confidence 4688999999999999999999988777777665 7899999999999875443222222111 122334789999
Q ss_pred cCCCCChHHHHHHhccchHH
Q 007334 274 AETGLGMTELYEALRPSVED 293 (607)
Q Consensus 274 A~~g~gi~eL~~~i~~~l~~ 293 (607)
|++|.|++++++.+.+.+..
T Consensus 330 A~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 330 ALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp TTTCTTGGGHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHHHH
Confidence 99999999999999887654
No 40
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.86 E-value=3.4e-21 Score=183.74 Aligned_cols=161 Identities=17% Similarity=0.235 Sum_probs=121.8
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
.++|+|+|.+|||||||+|+|++..... ...+. ++.+.....+...+ ..+.+|||||+. ++...+
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~ 82 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDTYTE-SYIST--IGVDFKIRTIELDGKTIKLQIWDTAGQE----------RFRTIT 82 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCS-CCCCC--SSEEEEEEEEEETTEEEEEEEEEECCSG----------GGCTTH
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCc--ccceEEEEEEEECCEEEEEEEEECCCcH----------hhhhhH
Confidence 4689999999999999999999876432 22333 66666666777766 579999999987 233345
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..++..+|++++|+|++++.+.... .+...+... ..+.|+++|+||+|+...+..............+. +++++||+
T Consensus 83 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 161 (196)
T 3tkl_A 83 SSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGI-PFLETSAK 161 (196)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTC-CEEEECTT
T ss_pred HHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCC-cEEEEeCC
Confidence 5678999999999999986554442 233333333 34789999999999987766555555556666776 89999999
Q ss_pred CCCChHHHHHHhccchHHH
Q 007334 276 TGLGMTELYEALRPSVEDY 294 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~~~ 294 (607)
+|.|++++++.|.+.+.+.
T Consensus 162 ~g~gv~~l~~~l~~~i~~~ 180 (196)
T 3tkl_A 162 NATNVEQSFMTMAAEIKKR 180 (196)
T ss_dssp TCTTHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999877653
No 41
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=1.1e-21 Score=184.47 Aligned_cols=153 Identities=18% Similarity=0.203 Sum_probs=106.6
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++.........++++.+.....+..++. .+.+|||||..+.. ....
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~----------~~~~ 78 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFR----------SVTH 78 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHH----------HHHH
Confidence 35899999999999999999999876544455666777766666677775 67899999965432 1123
Q ss_pred HHHhhccEEEEEeccchhh-----------HH---hcCCcEEEEEeCccCCCCcCch-HHHHHHHHhcHHHHHhhCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEVR-----------AV---EEGRGLVVIVNKMDLLSGRQNS-ALYKRVKEAVPQEIQTVIPQVT 465 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~-----------~~---~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 465 (607)
.++..+|++++|+|+++.. .. ..++|+++|+||+|+.+..... +.... +.+. .
T Consensus 79 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~--------~~~~----~ 146 (180)
T 2g6b_A 79 AYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEK--------LAKE----Y 146 (180)
T ss_dssp CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHH--------HHHH----H
T ss_pred HHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHH--------HHHH----c
Confidence 4667899999999998751 11 1578999999999998643221 11111 1111 1
Q ss_pred CCCEEEcccCCCCCHHHHHHHHHHHHHHHhcC
Q 007334 466 GIPVVFTSALEGRGRIAVMHQVIDTYQKWCLR 497 (607)
Q Consensus 466 ~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~ 497 (607)
+++++++||++|.|++++|+.+.+.+.+...+
T Consensus 147 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~ 178 (180)
T 2g6b_A 147 GLPFMETSAKTGLNVDLAFTAIAKELKRRSMK 178 (180)
T ss_dssp TCCEEECCTTTCTTHHHHHHHHHHHHHC----
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 56899999999999999999998877654443
No 42
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.86 E-value=4.2e-21 Score=177.66 Aligned_cols=157 Identities=17% Similarity=0.172 Sum_probs=112.5
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.+|||||||+|+|++... ...... ++.+.....+...+ ..+.+|||||+. ++...+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~~--~~~~~~--t~~~~~~~~~~~~~~~~~~~l~D~~G~~----------~~~~~~~ 70 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDEF--VEDYEP--TKADSYRKKVVLDGEEVQIDILDTAGQE----------DYAAIRD 70 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC--CSCCCT--TCCEEEEEEEEETTEEEEEEEEECCC-------------CHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhCcc--CCCCCC--CcceEEEEEEEECCEEEEEEEEECCCcc----------hhHHHHH
Confidence 5899999999999999999998764 222232 34444444445555 478999999987 3445566
Q ss_pred HHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
.++..+|++++|+|++++.+.... .+...+... ..+.|+++|+||+|+...+....++....+...+. +++++||+
T Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 149 (168)
T 1u8z_A 71 NYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNV-NYVETSAK 149 (168)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTC-EEEECCTT
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCC-eEEEeCCC
Confidence 788999999999999976554432 222333332 23789999999999987655555555555556666 78999999
Q ss_pred CCCChHHHHHHhccchH
Q 007334 276 TGLGMTELYEALRPSVE 292 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~ 292 (607)
+|.|+++++++|.+.+.
T Consensus 150 ~~~gi~~l~~~l~~~i~ 166 (168)
T 1u8z_A 150 TRANVDKVFFDLMREIR 166 (168)
T ss_dssp TCTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999987653
No 43
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.86 E-value=3.2e-21 Score=208.68 Aligned_cols=153 Identities=32% Similarity=0.462 Sum_probs=122.2
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCc-ccccccCcchhHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWL-QREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~-~~~~~~~~~~~~~~~~~~~ 402 (607)
+++|+++|.||||||||+|+|++.+..++++++|||+|.....+.+++..+.||||||+. +.. ...+.+....+..+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~--~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETN--DLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCC--TTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccch--hhHHHHHHHHHHHH
Confidence 579999999999999999999998888899999999999999999999999999999987 442 22344555667788
Q ss_pred HhhccEEEEEeccchh------h--HHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEccc
Q 007334 403 LMRAHVVALVLDAEEV------R--AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSA 474 (607)
Q Consensus 403 i~~ad~~llViD~~~~------~--~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA 474 (607)
+..||++|+|+|++++ . ....++|+++|+||+|+.+.... +.+ .+.+. .+.+++++||
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~il~~l~~~piivV~NK~DL~~~~~~----~~~--------~~~~~--~~~~~i~iSA 386 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVEKINE----EEI--------KNKLG--TDRHMVKISA 386 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHHHHHHHTTSSEEEEEEECSSCCCCCH----HHH--------HHHHT--CSTTEEEEEG
T ss_pred hhcccEEEEEecCCCCCCHHHHHHHHHhcCCCEEEEEECcccccccCH----HHH--------HHHhc--CCCcEEEEEC
Confidence 9999999999999765 1 11248899999999999754211 111 11111 2468999999
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 007334 475 LEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 475 ~~g~gv~~l~~~i~~~~~ 492 (607)
++|.|++++++.|.+.+.
T Consensus 387 ktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 387 LKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp GGTCCHHHHHHHHHHHTH
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999988643
No 44
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.86 E-value=1.1e-20 Score=185.59 Aligned_cols=179 Identities=20% Similarity=0.197 Sum_probs=116.8
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
..++|+++|.+|||||||+|+|++.. ..+.+.+++|.+.....+.+++..+.||||||+.+....+. ..........+
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~-~~~~~~~~~~~ 105 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRAN-VDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENR-NTIEMTTITAL 105 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTC-EEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGC-CHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchh-hhHHHHHHHHh
Confidence 35899999999999999999999875 44778899999988888888889999999999865421111 01101111234
Q ss_pred HhhccEEEEEeccchh------------hHHh---cCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV------------RAVE---EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~------------~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
+..+|++|+|+|+++. .... .++|+++|+||+|+.+............ ..+..... ..+
T Consensus 106 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~--~~~ 179 (228)
T 2qu8_A 106 AHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLI----KQILDNVK--NPI 179 (228)
T ss_dssp HTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHH----HHHHHHCC--SCE
T ss_pred hccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHH----HHHHHhcC--CCc
Confidence 5678999999999864 1111 2799999999999986543322111111 11111110 126
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHHHHH--hcCCChHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTYQKW--CLRLPTSRLNRWLRKV 510 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~~~~--~~~~~~~~l~~~l~~~ 510 (607)
+++++||++|.|++++|+.|.+.+.+. ..++++.+ +.|+..+
T Consensus 180 ~~~~~SA~~g~gi~~l~~~l~~~i~~~~~~~~~~~~~-~~~~~~~ 223 (228)
T 2qu8_A 180 KFSSFSTLTGVGVEQAKITACELLKNDQAESILLDQE-QLLNTKL 223 (228)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHC
T ss_pred eEEEEecccCCCHHHHHHHHHHHHHHHHHHHHHhhhh-hhhcccc
Confidence 899999999999999999999877543 34455555 6666543
No 45
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.86 E-value=2.5e-21 Score=209.89 Aligned_cols=171 Identities=19% Similarity=0.303 Sum_probs=129.4
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHH-HHH
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTA-GMT 197 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~-~~~ 197 (607)
..++|+++|.+|||||||+|+|++.....+++.++ +|++.....+...+..+.||||||+...........++. ..+
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~g--tt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 271 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAG--TTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRA 271 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEECC--------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHH
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCccccCCCCC--eEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHH
Confidence 45799999999999999999999987777888888 999998888888999999999999764321111111232 234
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHh----cCCCCcEEee
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLM----LGFGDPIAIS 273 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~----~~~~~~i~iS 273 (607)
..+++.||++|+|+|++++.+..+..+..++.+. ++|+++|+||+|+...+....++....+.. .+..+++++|
T Consensus 272 ~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~--~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 349 (456)
T 4dcu_A 272 LKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEA--GKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMS 349 (456)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT--TCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECC
T ss_pred HHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHc--CCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEc
Confidence 5688999999999999999999998888888775 789999999999987654433333333332 2334789999
Q ss_pred cCCCCChHHHHHHhccchHH
Q 007334 274 AETGLGMTELYEALRPSVED 293 (607)
Q Consensus 274 A~~g~gi~eL~~~i~~~l~~ 293 (607)
|++|.|++++++.|.+.+..
T Consensus 350 A~~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 350 ALTKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp TTTCTTGGGHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHH
Confidence 99999999999999887765
No 46
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.86 E-value=7.6e-22 Score=192.07 Aligned_cols=147 Identities=20% Similarity=0.207 Sum_probs=100.9
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.+||++||.+|||||||+++|+... +.....|.+..+.....+..++. .+.||||||+.++. .....
T Consensus 13 ~~KivlvGd~~VGKTsLi~r~~~~~-f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~----------~l~~~ 81 (216)
T 4dkx_A 13 KFKLVFLGEQSVGKTSLITRFMYDS-FDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFR----------SLIPS 81 (216)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSC-CC----------CEEEEEECSSCEEEEEEECCSCTTTCG----------GGHHH
T ss_pred cEEEEEECcCCcCHHHHHHHHHhCC-CCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhh----------hHHHH
Confidence 4899999999999999999999653 43344455556666666666665 56799999975542 11245
Q ss_pred HHhhccEEEEEeccchh--------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEV--------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~--------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
+++.+|++++|+|.++. .....+.|+|||+||+|+.+.+... .+..+.++...++
T Consensus 82 ~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~-----------~~e~~~~a~~~~~ 150 (216)
T 4dkx_A 82 YIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVS-----------IEEGERKAKELNV 150 (216)
T ss_dssp HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSC-----------HHHHHHHHHHHTC
T ss_pred HhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCccc-----------HHHHhhHHHHhCC
Confidence 78899999999999986 1123578999999999997653221 1111111122367
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
+++++||++|.||+++|+.|++.+.
T Consensus 151 ~~~e~SAktg~nV~e~F~~i~~~i~ 175 (216)
T 4dkx_A 151 MFIETSAKAGYNVKQLFRRVAAALP 175 (216)
T ss_dssp EEEEEBTTTTBSHHHHHHHHHHHC-
T ss_pred eeEEEeCCCCcCHHHHHHHHHHHHH
Confidence 8999999999999999999987654
No 47
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.85 E-value=1.9e-21 Score=180.61 Aligned_cols=158 Identities=21% Similarity=0.217 Sum_probs=113.1
Q ss_pred CEEEEecCCCCchhHHHHHhhccceee-eccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREAL-VYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~-v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
.+|+++|.+|||||||+|+|++..... .....+ ++..............+.+|||||+. ++...+..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~Dt~G~~----------~~~~~~~~ 74 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIG--ASFMTKTVQYQNELHKFLIWDTAGLE----------RFRALAPM 74 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCS--EEEEEEEEEETTEEEEEEEEEECCSG----------GGGGGTHH
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcee--EEEEEEEEEECCeEEEEEEEcCCCch----------hhhcccHh
Confidence 689999999999999999999876421 112222 33333332222234689999999987 23344556
Q ss_pred HhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETG 277 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g 277 (607)
++..+|++++|+|++++.+..+. .+...+... .++.|+++|+||+|+...+....+.........+. +++++||++|
T Consensus 75 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~ 153 (170)
T 1z0j_A 75 YYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHA-IFVETSAKNA 153 (170)
T ss_dssp HHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-EEEECBTTTT
T ss_pred hCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCC-EEEEEeCCCC
Confidence 78999999999999986655542 244444443 45789999999999987655544444555556665 7899999999
Q ss_pred CChHHHHHHhccch
Q 007334 278 LGMTELYEALRPSV 291 (607)
Q Consensus 278 ~gi~eL~~~i~~~l 291 (607)
.|++++++.|.+.+
T Consensus 154 ~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 154 ININELFIEISRRI 167 (170)
T ss_dssp BSHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHH
Confidence 99999999998655
No 48
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.85 E-value=3.8e-21 Score=181.84 Aligned_cols=161 Identities=19% Similarity=0.181 Sum_probs=119.8
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
.++|+++|.+|||||||+|+|++...... ..+. ++.+.....+..++ ..+.+|||||+. ++...+
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~ 76 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKKFKDD-SNHT--IGVEFGSKIINVGGKYVKLQIWDTAGQE----------RFRSVT 76 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTT-CCCC--SEEEEEEEEEEETTEEEEEEEEEECCSG----------GGHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCC-CCCc--cceEEEEEEEEECCEEEEEEEEeCCCcH----------HHHHHH
Confidence 46899999999999999999998765322 2222 55566556666666 589999999987 344556
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..++..+|++++|+|++++.+.... .+...+... ..+.|+++|+||+|+...+.....+....+...+. +++++||+
T Consensus 77 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 155 (186)
T 2bme_A 77 RSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENEL-MFLETSAL 155 (186)
T ss_dssp HTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEEECCTT
T ss_pred HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCC-EEEEecCC
Confidence 7788999999999999986554442 122333332 35789999999999986555554555555556666 78999999
Q ss_pred CCCChHHHHHHhccchHHH
Q 007334 276 TGLGMTELYEALRPSVEDY 294 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~~~ 294 (607)
+|.|++++++.|.+.+.+.
T Consensus 156 ~~~gi~~l~~~l~~~~~~~ 174 (186)
T 2bme_A 156 TGENVEEAFVQCARKILNK 174 (186)
T ss_dssp TCTTHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999998877654
No 49
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=2.1e-21 Score=185.18 Aligned_cols=160 Identities=20% Similarity=0.224 Sum_probs=115.9
Q ss_pred CCEEEEecCCCCchhHHHHHhhcccee-eeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREA-LVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~-~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
..+|+|+|.+|||||||+|+|++.... ......+ ++...........+..+.+|||||+. ++...+.
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~ 90 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIG--ASFMTKTVPCGNELHKFLIWDTAGQE----------RFHSLAP 90 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSS--EEEEEEEEECSSSEEEEEEEEECCSG----------GGGGGTH
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcc--eeEEEEEEEeCCEEEEEEEEcCCCch----------hhHhhhH
Confidence 468999999999999999999987642 2222333 44444333333355789999999987 2333455
Q ss_pred HHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAET 276 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~ 276 (607)
.++..+|++++|+|++++.+.... .+...+... ..+.|+++|+||+|+...+....+.....+...+. +++++||++
T Consensus 91 ~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~ 169 (192)
T 2fg5_A 91 MYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGA-IVVETSAKN 169 (192)
T ss_dssp HHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTC-EEEECBTTT
T ss_pred HhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCC-EEEEEeCCC
Confidence 678999999999999987655442 233333333 24789999999999986555555555555666666 789999999
Q ss_pred CCChHHHHHHhccchH
Q 007334 277 GLGMTELYEALRPSVE 292 (607)
Q Consensus 277 g~gi~eL~~~i~~~l~ 292 (607)
|.|++++++.|.+.+.
T Consensus 170 ~~gi~~l~~~l~~~i~ 185 (192)
T 2fg5_A 170 AINIEELFQGISRQIP 185 (192)
T ss_dssp TBSHHHHHHHHHHTCC
T ss_pred CcCHHHHHHHHHHHHH
Confidence 9999999999987664
No 50
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.85 E-value=3.3e-21 Score=179.30 Aligned_cols=158 Identities=25% Similarity=0.349 Sum_probs=108.9
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANV 200 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 200 (607)
++|+|+|++|||||||+|+|++.... ++..++ +|.+...+.+.+.+..+.+|||||+....+.. . .......+
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~-~~~~~~--~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-~---~~~~~~~~ 76 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVY-IGNWPG--VTVEKKEGEFEYNGEKFKVVDLPGVYSLTANS-I---DEIIARDY 76 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSS-CC-------CCCCCEEEEEETTEEEEEEECCCCSCSSSSS-H---HHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCee-ccCCCC--cceeeeEEEEEECCcEEEEEECCCcccCCCcc-h---hHHHHHHH
Confidence 57999999999999999999986542 444555 77787777788888999999999998543221 1 11222334
Q ss_pred h--hccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCC
Q 007334 201 L--AKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGL 278 (607)
Q Consensus 201 ~--~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~ 278 (607)
+ ..+|++++|+|+++. .....+...+.+. +.|+++|+||+|+...+.... ........++. +++++||++|.
T Consensus 77 ~~~~~~~~~i~v~D~~~~--~~~~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~-~~~~~SA~~~~ 150 (165)
T 2wji_A 77 IINEKPDLVVNIVDATAL--ERNLYLTLQLMEM--GANLLLALNKMDLAKSLGIEI-DVDKLEKILGV-KVVPLSAAKKM 150 (165)
T ss_dssp HHHHCCSEEEEEEETTCH--HHHHHHHHHHHHT--TCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTS-CEEECBGGGTB
T ss_pred HhcCCCCEEEEEecCCch--hHhHHHHHHHHhc--CCCEEEEEEchHhccccChhh-HHHHHHHHhCC-CEEEEEcCCCC
Confidence 4 389999999999862 1122233444443 789999999999875433221 12223334555 78999999999
Q ss_pred ChHHHHHHhccch
Q 007334 279 GMTELYEALRPSV 291 (607)
Q Consensus 279 gi~eL~~~i~~~l 291 (607)
|++++++.|.+.+
T Consensus 151 ~v~~l~~~l~~~~ 163 (165)
T 2wji_A 151 GIEELKKAISIAV 163 (165)
T ss_dssp SHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHh
Confidence 9999999987654
No 51
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.85 E-value=2.6e-21 Score=179.59 Aligned_cols=161 Identities=18% Similarity=0.180 Sum_probs=111.8
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
..+|+++|.+|||||||+|+|++....... .+...++...........+..+.+|||||+. ++......
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~----------~~~~~~~~ 74 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQ-ESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE----------RYHSLAPM 74 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTC-CCCSSEEEEEEEEEETTEEEEEEEEEECCSG----------GGGGGHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCC-CCccceEEEEEEEEECCEEEEEEEEeCCCcH----------HhhhhhHH
Confidence 368999999999999999999987643211 1211133322222222235689999999987 23344566
Q ss_pred HhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETG 277 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g 277 (607)
++..+|++++|+|++++.+..+. .+...+... .++.|+++|+||+|+...+....+.....+...+. +++++||++|
T Consensus 75 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g 153 (170)
T 1r2q_A 75 YYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSL-LFMETSAKTS 153 (170)
T ss_dssp HHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEEECCTTTC
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCC-eEEEEeCCCC
Confidence 78999999999999986554432 222333332 45789999999999987555444555555555665 7899999999
Q ss_pred CChHHHHHHhccchH
Q 007334 278 LGMTELYEALRPSVE 292 (607)
Q Consensus 278 ~gi~eL~~~i~~~l~ 292 (607)
.|++++++.|.+.+.
T Consensus 154 ~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 154 MNVNEIFMAIAKKLP 168 (170)
T ss_dssp TTHHHHHHHHHHTSC
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999987653
No 52
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.85 E-value=5.4e-21 Score=176.73 Aligned_cols=157 Identities=18% Similarity=0.167 Sum_probs=112.3
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.+|||||||+|+|++..... .... ++.+.....+...+ ..+.+|||||+. ++.....
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~l~D~~G~~----------~~~~~~~ 69 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFIE--KYDP--TIEDFYRKEIEVDSSPSVLEILDTAGTE----------QFASMRD 69 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCS--CCCT--TCCEEEEEEEEETTEEEEEEEEECCCTT----------CCHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCcc--cCCC--CcceeEEEEEEECCEEEEEEEEECCCch----------hhHHHHH
Confidence 589999999999999999999876432 2222 33333344445555 458999999987 2334455
Q ss_pred HHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
.++..+|++++|+|++++.+..+. .+...+.+. ..+.|+++|+||+|+...+..............++ +++++||+
T Consensus 70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 148 (167)
T 1kao_A 70 LYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGC-PFMETSAK 148 (167)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTS-CEEEECTT
T ss_pred HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCC-CEEEecCC
Confidence 678899999999999976554432 222223222 24789999999999987655544444455555666 78999999
Q ss_pred CCCChHHHHHHhccchH
Q 007334 276 TGLGMTELYEALRPSVE 292 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~ 292 (607)
+|.|++++++.|.+.+.
T Consensus 149 ~~~gi~~l~~~l~~~~~ 165 (167)
T 1kao_A 149 SKTMVDELFAEIVRQMN 165 (167)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHh
Confidence 99999999999987654
No 53
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.85 E-value=6.6e-21 Score=181.02 Aligned_cols=161 Identities=18% Similarity=0.192 Sum_probs=116.5
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeE-EEEeeeC-----------CeeEEEecCCCCccccCch
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIR-EGLAKLG-----------DLRFKVLDSAGLETEATSG 187 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~-~~~~~~~-----------~~~~~liDTpG~~~~~~~~ 187 (607)
..+|+|+|.+|||||||+|+|++...... ..+. .+.+.. ...+... ...+.+|||||+.
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~t--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~------ 81 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDGKFNSK-FITT--VGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLE------ 81 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCS-CCCC--CSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSG------
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCcC-cccc--cceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcH------
Confidence 46899999999999999999998764211 1121 333333 2333333 3589999999997
Q ss_pred hHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhH-HHHHHHHHhhC--CCCcEEEEecCCCcccCCcCcHHHHHHHHHhc
Q 007334 188 SILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLD-LEVGKWLRKHA--PQIKPIVAMNKCESLHNGTGSLAGAAAESLML 264 (607)
Q Consensus 188 ~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~-~~~~~~l~~~~--~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~ 264 (607)
++...+..++..+|++++|+|++++.+..+ ..+...+.... .+.|+++|+||+|+...+....+.....+...
T Consensus 82 ----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~ 157 (195)
T 3bc1_A 82 ----RFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKY 157 (195)
T ss_dssp ----GGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHc
Confidence 445566778999999999999998665554 22333333322 47899999999999875554444445555566
Q ss_pred CCCCcEEeecCCCCChHHHHHHhccchHHH
Q 007334 265 GFGDPIAISAETGLGMTELYEALRPSVEDY 294 (607)
Q Consensus 265 ~~~~~i~iSA~~g~gi~eL~~~i~~~l~~~ 294 (607)
++ +++++||++|.|++++++.|.+.+.++
T Consensus 158 ~~-~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 186 (195)
T 3bc1_A 158 GI-PYFETSAANGTNISHAIEMLLDLIMKR 186 (195)
T ss_dssp TC-CEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred CC-CEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 76 789999999999999999999877654
No 54
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=5e-21 Score=184.36 Aligned_cols=161 Identities=17% Similarity=0.168 Sum_probs=118.8
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+|+|.+|||||||+|+|++.... .....+++.+.....+.+++ ..+.+|||||+. ++...+
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~----------~~~~~~ 92 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGLFP---PGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE----------RFRSIT 92 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCC---TTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG----------GGHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCC---CCCCCccceeEEEEEEEECCEEEEEEEEECCCcH----------HHHHHH
Confidence 468999999999999999999987642 12222255666666666666 479999999987 444556
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..++..+|++++|+|++++.+.... .+...+... ..+.|+++|+||+|+...+....+.........+. +++++||+
T Consensus 93 ~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~ 171 (201)
T 2ew1_A 93 QSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDM-YYLETSAK 171 (201)
T ss_dssp GGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTC-CEEECCTT
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCC-EEEEEeCC
Confidence 6788999999999999986554432 233333333 34689999999999986555444444444555666 78999999
Q ss_pred CCCChHHHHHHhccchHHH
Q 007334 276 TGLGMTELYEALRPSVEDY 294 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~~~ 294 (607)
+|.|++++++.|.+.+.+.
T Consensus 172 ~g~gv~~l~~~l~~~i~~~ 190 (201)
T 2ew1_A 172 ESDNVEKLFLDLACRLISE 190 (201)
T ss_dssp TCTTHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999998877553
No 55
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.85 E-value=5.6e-21 Score=179.05 Aligned_cols=158 Identities=18% Similarity=0.216 Sum_probs=113.8
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
.++|+++|.+|||||||+|+|++.... ..... +++.+.....+...+ ..+.+|||||+. ++...+
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~~-t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~ 81 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKKFM--ADCPH-TIGVEFGTRIIEVSGQKIKLQIWDTAGQE----------RFRAVT 81 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC--SSCTT-SCCCCEEEEEEEETTEEEEEEEEECTTGG----------GTCHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC--CCCCC-ccceEEEEEEEEECCeEEEEEEEECCCCh----------HhhhhH
Confidence 478999999999999999999987642 11111 123333333344443 579999999987 333456
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..++..+|++++|+|++++.+..+. .+...+... ..+.|+++|+||+|+...+....++....+...+. +++++||+
T Consensus 82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 160 (179)
T 1z0f_A 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGL-LFLEASAK 160 (179)
T ss_dssp HHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-EEEECCTT
T ss_pred HHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCC-EEEEEeCC
Confidence 6788999999999999987555442 233333333 35789999999999987655555555555566676 78999999
Q ss_pred CCCChHHHHHHhccch
Q 007334 276 TGLGMTELYEALRPSV 291 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l 291 (607)
+|.|++++++.|.+.+
T Consensus 161 ~~~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 161 TGENVEDAFLEAAKKI 176 (179)
T ss_dssp TCTTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999988655
No 56
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.85 E-value=1.4e-21 Score=184.41 Aligned_cols=162 Identities=17% Similarity=0.251 Sum_probs=95.8
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+|+|.+|||||||+|+|++.... ....+. ++.+.....+.+++ ..+.+|||||+. ++...+
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~~~-~~~~~t--~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~ 74 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDAFN-STFIST--IGIDFKIRTIELDGKRIKLQIWDTAGQE----------RFRTIT 74 (183)
T ss_dssp EEEEEEECCCCC-----------------CHHHH--HCEEEEEEEEEETTEEEEEEEEEC-------------------C
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCc--ccceeEEEEEEECCEEEEEEEEcCCCCh----------hhhhhH
Confidence 468999999999999999999976542 111222 55666666666666 689999999987 344445
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..++..+|++++|+|++++.+.... .+...+... ..+.|+++|+||+|+...+....+.....+...++ +++++||+
T Consensus 75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~ 153 (183)
T 2fu5_C 75 TAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGI-KFMETSAK 153 (183)
T ss_dssp CTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTC-EEEECCC-
T ss_pred HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCC-eEEEEeCC
Confidence 5678899999999999986554432 233333332 34789999999999987655544555555556676 78999999
Q ss_pred CCCChHHHHHHhccchHHHH
Q 007334 276 TGLGMTELYEALRPSVEDYM 295 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~~~~ 295 (607)
+|.|++++++.|.+.+.+..
T Consensus 154 ~~~~i~~l~~~l~~~i~~~~ 173 (183)
T 2fu5_C 154 ANINVENAFFTLARDIKAKM 173 (183)
T ss_dssp --CCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHh
Confidence 99999999999998876543
No 57
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.85 E-value=5.1e-21 Score=185.17 Aligned_cols=162 Identities=18% Similarity=0.223 Sum_probs=117.2
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHH
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGM 196 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~ 196 (607)
..++|+|+|.+|||||||+|+|++.... ....+. ++.+.....+.+.+ ..+.+|||||+.. +...
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~ 85 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFN-PSFITT--IGIDFKIKTVDINGKKVKLQLWDTAGQER----------FRTI 85 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCC-CSSSCC--CSCCEEEEEEEETTEEEEEEEECCTTGGG----------GTCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCC-cccCCc--ccceEEEEEEEECCEEEEEEEEeCCCcHH----------HHHH
Confidence 3579999999999999999999987643 222333 56666666667776 6799999999872 2233
Q ss_pred HHHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeec
Q 007334 197 TANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISA 274 (607)
Q Consensus 197 ~~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA 274 (607)
+..++..+|++++|+|++++.+..+. .+...+... ..+.|+++|+||+|+.. +....+.........++ +++++||
T Consensus 86 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~-~~~~~Sa 163 (213)
T 3cph_A 86 TTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET-RVVTADQGEALAKELGI-PFIESSA 163 (213)
T ss_dssp CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSS-CCSCHHHHHHHHHHHTC-CEEECBT
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc-cccCHHHHHHHHHHcCC-EEEEEeC
Confidence 45678899999999999886554442 233333333 23689999999999943 33333444444455666 7899999
Q ss_pred CCCCChHHHHHHhccchHHHH
Q 007334 275 ETGLGMTELYEALRPSVEDYM 295 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~~l~~~~ 295 (607)
++|.|++++++.|.+.+.+.+
T Consensus 164 ~~~~gi~~l~~~l~~~~~~~~ 184 (213)
T 3cph_A 164 KNDDNVNEIFFTLAKLIQEKI 184 (213)
T ss_dssp TTTBSSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999998876643
No 58
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.85 E-value=9.6e-21 Score=182.09 Aligned_cols=159 Identities=17% Similarity=0.180 Sum_probs=117.7
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
.++|+|+|.+|||||||+|+|++... .....+ ++.+.....+.+.+ ..+.+|||||+. ++...+
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~--t~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~ 79 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEP--TKADSYRKKVVLDGEEVQIDILDTAGQE----------DYAAIR 79 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC--CTTCCT--TCCEEEEEEEEETTEEEEEEEEECCCTT----------CCHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCC--CCCCCC--ccceEEEEEEEECCEEEEEEEEcCCChh----------hhHHHH
Confidence 47899999999999999999998764 333333 44444445555555 478999999987 333455
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhhC--CCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeec
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKHA--PQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISA 274 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~~--~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA 274 (607)
..++..+|++++|+|++++.+.... .+...+.... .+.|+++|+||+|+...+....+.....+...+. +++++||
T Consensus 80 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa 158 (206)
T 2bov_A 80 DNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNV-NYVETSA 158 (206)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEEEECT
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCC-eEEEEeC
Confidence 6778899999999999986554432 2333333332 3789999999999987655555555555566676 7899999
Q ss_pred CCCCChHHHHHHhccchHH
Q 007334 275 ETGLGMTELYEALRPSVED 293 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~~l~~ 293 (607)
++|.|++++++.|.+.+..
T Consensus 159 ~~g~gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 159 KTRANVDKVFFDLMREIRA 177 (206)
T ss_dssp TTCTTHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999987755
No 59
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.85 E-value=9.5e-21 Score=179.99 Aligned_cols=159 Identities=20% Similarity=0.228 Sum_probs=114.0
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHH-HH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTA-GM 196 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~-~~ 196 (607)
..+|+|+|.+|||||||+|+|++....... .+. ++.+.....+..++ ..+.+|||||+. ++. ..
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~t--~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~ 86 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRT-EAT--IGVDFRERAVDIDGERIKIQLWDTAGQE----------RFRKSM 86 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCSSC-CCC--CSCCEEEEEEEETTEEEEEEEEECCCSH----------HHHTTT
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCC-CCC--cceEEEEEEEEECCEEEEEEEEECCCch----------hhhhhh
Confidence 468999999999999999999987653221 222 44445555555555 589999999987 444 45
Q ss_pred HHHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEee
Q 007334 197 TANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAIS 273 (607)
Q Consensus 197 ~~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iS 273 (607)
+..++..+|++|+|+|++++.+.... .+...+.+. ..+.|+++|+||+|+...+....+.........++ +++++|
T Consensus 87 ~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~S 165 (189)
T 1z06_A 87 VQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSM-PLFETS 165 (189)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-CEEECC
T ss_pred hHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCC-EEEEEe
Confidence 66788999999999999986554442 233333332 34789999999999987655544545555556676 789999
Q ss_pred cCCC---CChHHHHHHhccchH
Q 007334 274 AETG---LGMTELYEALRPSVE 292 (607)
Q Consensus 274 A~~g---~gi~eL~~~i~~~l~ 292 (607)
|++| .|++++++.|.+.+.
T Consensus 166 a~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 166 AKNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp SSSGGGGSCHHHHHHHHC----
T ss_pred CCcCCcccCHHHHHHHHHHHHh
Confidence 9999 999999999987664
No 60
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.85 E-value=8.5e-21 Score=191.53 Aligned_cols=155 Identities=25% Similarity=0.377 Sum_probs=118.5
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
.++|+++|++|||||||+|+|+|.. ..+++.+|+|.+.....+.+++..+.||||||+.+..... .....+..++
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~----~~~~~~~~~~ 77 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLR-QHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHS----IDELIARNFI 77 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTC-EEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSC----HHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC-cccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCC----HHHHHHHHhh
Confidence 3689999999999999999999875 5888999999999999999999999999999987653211 1112233344
Q ss_pred --hhccEEEEEeccchh--------hHHhcC-CcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEc
Q 007334 404 --MRAHVVALVLDAEEV--------RAVEEG-RGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFT 472 (607)
Q Consensus 404 --~~ad~~llViD~~~~--------~~~~~~-~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i 472 (607)
..+|++++|+|+++. .....+ +|+++|+||+|+.+..........+ .+.+ ++|++++
T Consensus 78 ~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l--------~~~l----g~~~~~~ 145 (271)
T 3k53_A 78 LDGNADVIVDIVDSTCLMRNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKKM--------RKEL----GVPVIPT 145 (271)
T ss_dssp HTTCCSEEEEEEEGGGHHHHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCCHHHH--------HHHH----SSCEEEC
T ss_pred hccCCcEEEEEecCCcchhhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHHHHHH--------HHHc----CCcEEEE
Confidence 579999999999986 233456 9999999999986432221112222 1111 5799999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHh
Q 007334 473 SALEGRGRIAVMHQVIDTYQKWC 495 (607)
Q Consensus 473 SA~~g~gv~~l~~~i~~~~~~~~ 495 (607)
||++|.|++++++.+.+.+....
T Consensus 146 Sa~~g~gi~~l~~~i~~~~~~~~ 168 (271)
T 3k53_A 146 NAKKGEGVEELKRMIALMAEGKV 168 (271)
T ss_dssp BGGGTBTHHHHHHHHHHHHHTCC
T ss_pred EeCCCCCHHHHHHHHHHHHhccc
Confidence 99999999999999998876543
No 61
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.85 E-value=1.8e-21 Score=196.61 Aligned_cols=163 Identities=25% Similarity=0.240 Sum_probs=122.2
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCc---hhHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATS---GSILDRTAGM 196 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~---~~~~~~~~~~ 196 (607)
.++|+++|.+|||||||+|+|++.. ..+++.++ +|.+...+.+...+..+.+|||||+....+. .... +....
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~-~~v~~~~g--~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~-e~i~~ 78 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSR-QRVGNWAG--VTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLD-EQIAC 78 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTC-EEEEECTT--SSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHH-HHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC-cccCCCCC--eeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHH-HHHHH
Confidence 3689999999999999999999987 46788888 8999999999988899999999999854421 1111 11112
Q ss_pred HHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCC
Q 007334 197 TANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAET 276 (607)
Q Consensus 197 ~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~ 276 (607)
.......+|++++|+|+++. .....+..++.+. +.|+++|+||+|+......... .......+|+ +++++||++
T Consensus 79 ~~~~~~~~d~ii~VvD~~~~--~~~~~~~~~l~~~--~~p~ivv~NK~Dl~~~~~~~~~-~~~l~~~lg~-~~i~~SA~~ 152 (274)
T 3i8s_A 79 HYILSGDADLLINVVDASNL--ERNLYLTLQLLEL--GIPCIVALNMLDIAEKQNIRIE-IDALSARLGC-PVIPLVSTR 152 (274)
T ss_dssp HHHHHTCCSEEEEEEEGGGH--HHHHHHHHHHHHH--TCCEEEEEECHHHHHHTTEEEC-HHHHHHHHTS-CEEECCCGG
T ss_pred HHHhhcCCCEEEEEecCCCh--HHHHHHHHHHHhc--CCCEEEEEECccchhhhhHHHH-HHHHHHhcCC-CEEEEEcCC
Confidence 22234799999999999872 3334566777776 7899999999998764332111 1223344566 889999999
Q ss_pred CCChHHHHHHhccchH
Q 007334 277 GLGMTELYEALRPSVE 292 (607)
Q Consensus 277 g~gi~eL~~~i~~~l~ 292 (607)
|.|+++|++.|.+.++
T Consensus 153 g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 153 GRGIEALKLAIDRYKA 168 (274)
T ss_dssp GHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999987654
No 62
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.85 E-value=1.5e-21 Score=180.87 Aligned_cols=146 Identities=18% Similarity=0.163 Sum_probs=90.6
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.+||+++|.+|||||||+|+|++.....+.+.+|++.+ ..+.+++. .+.+|||||..+.. .....
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~D~~g~~~~~----------~~~~~ 68 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD---RSIVVDGEEASLMVYDIWEQDGGR----------WLPGH 68 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEE---EEEEETTEEEEEEEEECC---------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceE---EEEEECCEEEEEEEEECCCCccch----------hhhhh
Confidence 37999999999999999999998776677777887765 23345554 67799999965432 11234
Q ss_pred HHhhccEEEEEeccchh-----------hHH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~-----------~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
+++.+|++++|+|+++. ... ..++|+++|+||+|+.+....... .. ..+.. ..+
T Consensus 69 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~--~~-----~~~~~----~~~ 137 (166)
T 3q72_A 69 CMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVD--EG-----RACAV----VFD 137 (166)
T ss_dssp ----CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHH--HH-----HHHHH----HTT
T ss_pred hhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHH--HH-----HHHHH----HhC
Confidence 56789999999999875 111 247899999999999865332211 00 11111 135
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
++++++||++|.|++++|+.+.+.+.+
T Consensus 138 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 164 (166)
T 3q72_A 138 CKFIETSAALHHNVQALFEGVVRQIRL 164 (166)
T ss_dssp CEEEECBGGGTBSHHHHHHHHHHHHHH
T ss_pred CcEEEeccCCCCCHHHHHHHHHHHHHh
Confidence 799999999999999999999887654
No 63
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.85 E-value=6.4e-21 Score=183.26 Aligned_cols=163 Identities=19% Similarity=0.251 Sum_probs=117.4
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC--CeeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG--DLRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+|+|.+|||||||+|+|++....... .+. .+.+.....+... +..+.+|||||+. ++...+
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~t--~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~ 74 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTPAF-VST--VGIDFKVKTIYRNDKRIKLQIWDTAGLE----------RYRTIT 74 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCSCC-CCC--CSEEEEEEEEEETTEEEEEEEEEECCSG----------GGHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCc-CCc--cceeEEEEEEEECCeEEEEEEEECCCch----------hhcchH
Confidence 468999999999999999999987643211 121 2233333333333 4689999999987 344556
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..++..+|++|+|+|++++.+.... .+...+... ..+.|+++|+||+|+...+....+.........++ +++++||+
T Consensus 75 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 153 (203)
T 1zbd_A 75 TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGF-EFFEASAK 153 (203)
T ss_dssp HTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTC-EEEECBTT
T ss_pred HHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCC-eEEEEECC
Confidence 7788999999999999886554432 233333332 24789999999999987655544555555566676 78999999
Q ss_pred CCCChHHHHHHhccchHHHHh
Q 007334 276 TGLGMTELYEALRPSVEDYML 296 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~~~~~ 296 (607)
+|.|++++++.|.+.+.+.+.
T Consensus 154 ~~~gi~~l~~~l~~~i~~~~~ 174 (203)
T 1zbd_A 154 DNINVKQTFERLVDVICEKMS 174 (203)
T ss_dssp TTBSSHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999988766543
No 64
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=1.9e-21 Score=185.26 Aligned_cols=162 Identities=19% Similarity=0.252 Sum_probs=118.5
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeec-cCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVY-NTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~-~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
...+|+|+|.+|||||||+|+|++....... ...+ ++...........+..+.+|||||+. .+...+
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~ 89 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVG--IDFKVKTVYRHEKRVKLQIWDTAGQE----------RYRTIT 89 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEET--TTEEEEEEEETTTTEEEEEECHHHHH----------HCHHHH
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCee--eEEEEEEEEECCEEEEEEEEeCCChH----------HHHHHH
Confidence 4679999999999999999999987632111 1111 23333333333456789999999976 455667
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..++..+|++++|+|++++.+.... .+...+... ..+.|+++|+||+|+...+....+.........++ +++++||+
T Consensus 90 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 168 (191)
T 3dz8_A 90 TAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGF-DFFEASAK 168 (191)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEEECBTT
T ss_pred HHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCC-eEEEEECC
Confidence 7889999999999999976554432 233344433 25789999999999987665555555556666777 78999999
Q ss_pred CCCChHHHHHHhccchHH
Q 007334 276 TGLGMTELYEALRPSVED 293 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~~ 293 (607)
+|.|++++++.|.+.+.+
T Consensus 169 ~~~gi~~l~~~l~~~i~~ 186 (191)
T 3dz8_A 169 ENISVRQAFERLVDAICD 186 (191)
T ss_dssp TTBSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999887755
No 65
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.85 E-value=4.3e-21 Score=179.85 Aligned_cols=158 Identities=16% Similarity=0.218 Sum_probs=115.6
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.+|||||||+|+|++...... ..+. ++.+.....+.+.+ ..+.+|||||+.. +...+.
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~----------~~~~~~ 81 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDSFDNT-YQAT--IGIDFLSKTMYLEDRTVRLQLWDTAGQER----------FRSLIP 81 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSS-CCCC--CSEEEEEEEEEETTEEEEEEEEEECCSGG----------GGGGSH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC-CCCc--eeeEEEEEEEEECCeEEEEEEEECCCcHH----------HHHHHH
Confidence 6899999999999999999998764322 2232 56666666666666 4799999999872 333445
Q ss_pred HHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAET 276 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~ 276 (607)
.++..+|++++|+|++++.+.... .+...+... ..+.|+++|+||+|+...+..........+...+. +++++||++
T Consensus 82 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 160 (179)
T 2y8e_A 82 SYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKA 160 (179)
T ss_dssp HHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTC-EEEEEBTTT
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCC-eEEEEeCCC
Confidence 678899999999999875544432 222222222 34789999999999987655545555555556666 789999999
Q ss_pred CCChHHHHHHhccchH
Q 007334 277 GLGMTELYEALRPSVE 292 (607)
Q Consensus 277 g~gi~eL~~~i~~~l~ 292 (607)
|.|++++++.|.+.+.
T Consensus 161 ~~~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 161 GYNVKQLFRRVAAALP 176 (179)
T ss_dssp TBSHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999987664
No 66
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.85 E-value=4.5e-21 Score=182.66 Aligned_cols=161 Identities=18% Similarity=0.183 Sum_probs=115.3
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+|+|.+|||||||+|+|++........ +. ++.+.....+..++ ..+.+|||||+.. +...+
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-~t--~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~ 87 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-LT--IGVEFGARMVNIDGKQIKLQIWDTAGQES----------FRSIT 87 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC--------CCSSEEEEEEEETTEEEEEEEECCTTGGG----------TSCCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCC-Cc--ccceeEEEEEEECCEEEEEEEEECCCchh----------hhhhH
Confidence 4689999999999999999999876543322 22 34444444555555 5899999999873 22334
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..++..+|++++|+|++++.+..+. .+...+... ..+.|+++|+||+|+...+....+.....+...++ .++++||+
T Consensus 88 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~ 166 (191)
T 2a5j_A 88 RSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGL-IFMETSAK 166 (191)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEEEECTT
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCC-EEEEEeCC
Confidence 5678899999999999886554442 233333332 34789999999999987555544555555556676 78999999
Q ss_pred CCCChHHHHHHhccchHHH
Q 007334 276 TGLGMTELYEALRPSVEDY 294 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~~~ 294 (607)
+|.|++++++.|.+.+.++
T Consensus 167 ~~~gi~~l~~~l~~~i~~~ 185 (191)
T 2a5j_A 167 TACNVEEAFINTAKEIYRK 185 (191)
T ss_dssp TCTTHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999998877653
No 67
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.85 E-value=8.2e-21 Score=184.58 Aligned_cols=160 Identities=21% Similarity=0.243 Sum_probs=118.8
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC------------CeeEEEecCCCCccccCch
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG------------DLRFKVLDSAGLETEATSG 187 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~------------~~~~~liDTpG~~~~~~~~ 187 (607)
..+|+|+|.+|||||||+|+|++...... ..+ +++.+.....+.+. ...+.||||||+.
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~-~~~--t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~------ 95 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDNKFNPK-FIT--TVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE------ 95 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCSCCCCE-EEE--EEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHH------
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCcC-CCC--ceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcH------
Confidence 46899999999999999999998754211 111 13333333333333 4679999999976
Q ss_pred hHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhC-----CCCcEEEEecCCCcccCCcCcHHHHHHHHH
Q 007334 188 SILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHA-----PQIKPIVAMNKCESLHNGTGSLAGAAAESL 262 (607)
Q Consensus 188 ~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~-----~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~ 262 (607)
++...+..++..+|++|+|+|++++.+..+ +..|+.... .+.|+++|+||+|+...+............
T Consensus 96 ----~~~~~~~~~~~~~d~iilV~D~~~~~s~~~--~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~ 169 (217)
T 2f7s_A 96 ----RFRSLTTAFFRDAMGFLLMFDLTSQQSFLN--VRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELAD 169 (217)
T ss_dssp ----HHHHHHHHHHTTCCEEEEEEETTCHHHHHH--HHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred ----hHHhHHHHHhcCCCEEEEEEECcCHHHHHH--HHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHH
Confidence 566677788999999999999987654443 446666542 578999999999998765554455555556
Q ss_pred hcCCCCcEEeecCCCCChHHHHHHhccchHHHH
Q 007334 263 MLGFGDPIAISAETGLGMTELYEALRPSVEDYM 295 (607)
Q Consensus 263 ~~~~~~~i~iSA~~g~gi~eL~~~i~~~l~~~~ 295 (607)
..++ +++++||++|.|+++++++|.+.+.+.+
T Consensus 170 ~~~~-~~~~~Sa~~g~gi~~l~~~l~~~i~~~~ 201 (217)
T 2f7s_A 170 KYGI-PYFETSAATGQNVEKAVETLLDLIMKRM 201 (217)
T ss_dssp HTTC-CEEEEBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred HCCC-cEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 6676 7899999999999999999998876644
No 68
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.85 E-value=1e-20 Score=178.51 Aligned_cols=159 Identities=17% Similarity=0.180 Sum_probs=116.3
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+++|.+|||||||+|+|++... ...... ++.+.....+...+ ..+.+|||||+. ++...+
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~--t~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~ 83 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEP--TKADSYRKKVVLDGEEVQIDILDTAGQE----------DYAAIR 83 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC--CCSCCT--TCCEEEEEEEEETTEEEEEEEEECCCTT----------CCHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCCC--CCcCCC--ccceEEEEEEEECCEEEEEEEEECCCCc----------ccHHHH
Confidence 36899999999999999999998764 233333 44444444455555 478999999987 233455
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeec
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISA 274 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA 274 (607)
..++..+|++++|+|++++.+.... .+...+... ..+.|+++|+||+|+...+.....+....+...++ +++++||
T Consensus 84 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa 162 (187)
T 2a9k_A 84 DNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNV-NYVETSA 162 (187)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEEECCT
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCC-eEEEeCC
Confidence 6778899999999999976544432 222223322 23789999999999987655555555556666676 7899999
Q ss_pred CCCCChHHHHHHhccchHH
Q 007334 275 ETGLGMTELYEALRPSVED 293 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~~l~~ 293 (607)
++|.|++++++.|.+.+.+
T Consensus 163 ~~~~gi~~l~~~l~~~i~~ 181 (187)
T 2a9k_A 163 KTRANVDKVFFDLMREIRA 181 (187)
T ss_dssp TTCTTHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999887754
No 69
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.85 E-value=2e-21 Score=195.74 Aligned_cols=151 Identities=26% Similarity=0.394 Sum_probs=112.2
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
.++|+++|.||||||||+|+|+|.. ..++++||+|++...+.+.. +..+.+|||||+.+..... .+ ...+..++
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~-~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~-~~---e~v~~~~~ 76 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHN-QRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYS-PE---AKVARDYL 76 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCC-CCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSS-HH---HHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCC-hH---HHHHHHHH
Confidence 4789999999999999999999864 67889999999988777665 7789999999987653211 11 11223444
Q ss_pred h--hccEEEEEeccchh--------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcc
Q 007334 404 M--RAHVVALVLDAEEV--------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTS 473 (607)
Q Consensus 404 ~--~ad~~llViD~~~~--------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iS 473 (607)
. .+|++++|+|+++. ...+.++|+++|+||+|+..........+.+. .. .++|++++|
T Consensus 77 ~~~~~d~vi~V~D~t~~e~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~----~~--------lg~~vi~~S 144 (272)
T 3b1v_A 77 LSQRADSILNVVDATNLERNLYLTTQLIETGIPVTIALNMIDVLDGQGKKINVDKLS----YH--------LGVPVVATS 144 (272)
T ss_dssp HTTCCSEEEEEEEGGGHHHHHHHHHHHHHTCSCEEEEEECHHHHHHTTCCCCHHHHH----HH--------HTSCEEECB
T ss_pred hcCCCCEEEEEecCCchHhHHHHHHHHHhcCCCEEEEEEChhhCCcCCcHHHHHHHH----HH--------cCCCEEEEE
Confidence 4 59999999999886 23346899999999999864322111112221 11 157999999
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q 007334 474 ALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 474 A~~g~gv~~l~~~i~~~~~ 492 (607)
|++|.|++++|+.+.+.+.
T Consensus 145 A~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 145 ALKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp TTTTBSHHHHHHHHHHSCT
T ss_pred ccCCCCHHHHHHHHHHHHh
Confidence 9999999999999987653
No 70
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.85 E-value=2.7e-21 Score=180.71 Aligned_cols=150 Identities=17% Similarity=0.178 Sum_probs=98.3
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.++|+++|.+|||||||+|+|++.......+.+|++.. ...+.+++. .+.+|||||+.... +. .....
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~D~~g~~~~~-------~~-~~~~~ 73 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVY--ERTLTVDGEDTTLVVVDTWEAEKLD-------KS-WSQES 73 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEE--EEEEEETTEEEEEEEECCC--------------C-HHHHH
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCCccccCcccccee--EEEEEECCEEEEEEEEecCCCCccc-------hh-hhHHh
Confidence 47999999999999999999998866666666666543 344566665 67899999964421 00 12234
Q ss_pred HHhhccEEEEEeccchh-----------hHH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~-----------~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
+++.+|++++|+|+++. ... ..++|+++|+||+|+.+...... +.. . .+.. ..+
T Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~--~~~-~----~~~~----~~~ 142 (175)
T 2nzj_A 74 CLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSV--EEG-R----ACAV----VFD 142 (175)
T ss_dssp TTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCH--HHH-H----HHHH----HHT
T ss_pred hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCH--HHH-H----HHHH----HcC
Confidence 56779999999999875 111 13789999999999976533211 111 0 1111 124
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTYQKW 494 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~~~~ 494 (607)
++++++||++|.|++++|+.+.+.+...
T Consensus 143 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 170 (175)
T 2nzj_A 143 CKFIETSATLQHNVAELFEGVVRQLRLR 170 (175)
T ss_dssp SEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 6899999999999999999998876543
No 71
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.85 E-value=7.9e-21 Score=181.98 Aligned_cols=161 Identities=19% Similarity=0.143 Sum_probs=115.4
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHH
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGM 196 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~ 196 (607)
..++|+|||.+|||||||+|+|++..... ...+. ++.+.....+.+++ ..+.+|||||+.... . ..
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~-------~--~~ 89 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQGDS-AHEPE--NPEDTYERRIMVDKEEVTLVVYDIWEQGDAG-------G--WL 89 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEECCG-GGTTT--SCTTEEEEEEEETTEEEEEEEECCCCCSGGG-------H--HH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhccCCc-cCCCC--cccceEEEEEEECCEEEEEEEEecCCCccch-------h--hh
Confidence 35799999999999999999998754332 23343 55565555556655 467899999997311 1 13
Q ss_pred HHHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhhC--CCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEee
Q 007334 197 TANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKHA--PQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAIS 273 (607)
Q Consensus 197 ~~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~~--~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iS 273 (607)
...++..+|++++|+|++++.+.... .+...+.... .+.|+++|+||+|+...+....++....+...+. +++++|
T Consensus 90 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~-~~~e~S 168 (195)
T 3cbq_A 90 RDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSC-KHIETS 168 (195)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTC-EEEEEB
T ss_pred HHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCC-EEEEEc
Confidence 34567899999999999886554442 2222233322 3789999999999987655555555555556666 789999
Q ss_pred cCCCCChHHHHHHhccchH
Q 007334 274 AETGLGMTELYEALRPSVE 292 (607)
Q Consensus 274 A~~g~gi~eL~~~i~~~l~ 292 (607)
|++|.|++++++.|.+.+.
T Consensus 169 a~~~~~v~~lf~~l~~~i~ 187 (195)
T 3cbq_A 169 AALHHNTRELFEGAVRQIR 187 (195)
T ss_dssp TTTTBSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999987664
No 72
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.85 E-value=6.1e-21 Score=176.71 Aligned_cols=157 Identities=16% Similarity=0.169 Sum_probs=110.0
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC--CeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG--DLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.+|||||||+|+|++.... ..... ++.+.....+... +..+.+|||||+.. +.....
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~~~l~D~~G~~~----------~~~~~~ 69 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIFV--EKYDP--TIEDSYRKQVEVDCQQCMLEILDTAGTEQ----------FTAMRD 69 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCC--CSCCC--CSEEEEEEEEESSSCEEEEEEEEECSSCS----------STTHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--CCCCC--CccceEEEEEEECCEEEEEEEEECCChHH----------HHHHHH
Confidence 57999999999999999999986542 22222 3333333333333 45789999999873 223345
Q ss_pred HHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
.++..+|++++|+|++++.+.... .+...+... ..+.|+++|+||+|+...+....+.........+..+++++||+
T Consensus 70 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 149 (167)
T 1c1y_A 70 LYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAK 149 (167)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTT
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCC
Confidence 677889999999999986544442 233333332 34789999999999987655544444445555533378999999
Q ss_pred CCCChHHHHHHhccch
Q 007334 276 TGLGMTELYEALRPSV 291 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l 291 (607)
+|.|++++++.|.+.+
T Consensus 150 ~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 150 SKINVNEIFYDLVRQI 165 (167)
T ss_dssp TTBSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999987654
No 73
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.85 E-value=6e-21 Score=177.13 Aligned_cols=157 Identities=19% Similarity=0.261 Sum_probs=111.0
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.+|||||||+|+|++..... ...+. .+.+.....+.+.+ ..+.+|||||+. ++...+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~D~~G~~----------~~~~~~~ 70 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAE-NKEPT--IGAAFLTQRVTINEHTVKFEIWDTAGQE----------RFASLAP 70 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCT-TCCCC--SSEEEEEEEEEETTEEEEEEEEEECCSG----------GGGGGHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCc--cceeEEEEEEEECCEEEEEEEEECCCCh----------hhhhhhh
Confidence 579999999999999999999876421 12222 33333334444443 579999999987 2333456
Q ss_pred HHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccC---CcCcHHHHHHHHHhcCCCCcEEee
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHN---GTGSLAGAAAESLMLGFGDPIAIS 273 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~---~~~~~~~~~~~~~~~~~~~~i~iS 273 (607)
.++..+|++++|+|++++.+..+. .+...+... ..+.|+++|+||+|+... +..............+. +++++|
T Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~-~~~~~S 149 (170)
T 1ek0_A 71 XYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGL-LFFETS 149 (170)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTC-EEEECC
T ss_pred hhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCC-EEEEEe
Confidence 678999999999999986555442 222333332 357899999999999865 33333444444555666 789999
Q ss_pred cCCCCChHHHHHHhccch
Q 007334 274 AETGLGMTELYEALRPSV 291 (607)
Q Consensus 274 A~~g~gi~eL~~~i~~~l 291 (607)
|++|.|++++++.|.+.+
T Consensus 150 a~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 150 AKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp TTTCTTHHHHHHHHHTTS
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999998765
No 74
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.85 E-value=5e-21 Score=182.47 Aligned_cols=161 Identities=18% Similarity=0.161 Sum_probs=113.7
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee--CCeeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL--GDLRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
.++|+|+|.+|||||||+|+|++........ +. .+.+.....+.. .+..+.+|||||+.. +...+
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~-~t--~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~ 91 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNEFSHDSR-TT--IGVEFSTRTVMLGTAAVKAQIWDTAGLER----------YRAIT 91 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCSSCC-CC--SSEEEEEEEEEETTEEEEEEEEEESCCCT----------TCTTH
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCC-Cc--cceeEEEEEEEECCEEEEEEEEeCCCchh----------hhhhh
Confidence 4689999999999999999999876543221 11 222222223333 346789999999973 22344
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..++..+|++|+|+|++++.+.... .+...+... ..+.|+++|+||+|+...+..........+...++ .++++||+
T Consensus 92 ~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 170 (193)
T 2oil_A 92 SAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGL-LFLETSAL 170 (193)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEEEECTT
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCC-EEEEEeCC
Confidence 5678999999999999886554431 222333322 34789999999999987655444545555556666 78999999
Q ss_pred CCCChHHHHHHhccchHHH
Q 007334 276 TGLGMTELYEALRPSVEDY 294 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~~~ 294 (607)
+|.|++++++.|.+.+.++
T Consensus 171 ~~~gi~~l~~~l~~~i~~~ 189 (193)
T 2oil_A 171 DSTNVELAFETVLKEIFAK 189 (193)
T ss_dssp TCTTHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999998877553
No 75
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.85 E-value=1.8e-21 Score=199.20 Aligned_cols=166 Identities=26% Similarity=0.378 Sum_probs=126.1
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANV 200 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 200 (607)
..|+|+|+||||||||+|+|++...++++..++ +|++...+.+..++.++.+|||||+... +...+...+...+..+
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~--tTr~~~~gi~~~~~~~i~~iDTpG~~~~-~~~~l~~~~~~~~~~~ 85 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQ--TTRHRIVGIHTEGAYQAIYVDTPGLHME-EKRAINRLMNKAASSS 85 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSS--CCSSCEEEEEEETTEEEEEESSSSCCHH-HHHHHHHHHTCCTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCCC--cceeeEEEEEEECCeeEEEEECcCCCcc-chhhHHHHHHHHHHHH
Confidence 479999999999999999999998887777777 8888888888888899999999998610 1111111222334556
Q ss_pred hhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHH-hcCCCCcEEeecCCCCC
Q 007334 201 LAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESL-MLGFGDPIAISAETGLG 279 (607)
Q Consensus 201 ~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~-~~~~~~~i~iSA~~g~g 279 (607)
+..+|++++|+|+++ .+..+..+.+.+... +.|+++|+||+|+..... ........+. .+++..++++||++|.|
T Consensus 86 l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~--~~P~ilvlNK~D~~~~~~-~~~~~l~~l~~~~~~~~~i~iSA~~g~~ 161 (301)
T 1ega_A 86 IGDVELVIFVVEGTR-WTPDDEMVLNKLREG--KAPVILAVNKVDNVQEKA-DLLPHLQFLASQMNFLDIVPISAETGLN 161 (301)
T ss_dssp CCCEEEEEEEEETTC-CCHHHHHHHHHHHSS--SSCEEEEEESTTTCCCHH-HHHHHHHHHHTTSCCSEEEECCTTTTTT
T ss_pred HhcCCEEEEEEeCCC-CCHHHHHHHHHHHhc--CCCEEEEEECcccCccHH-HHHHHHHHHHHhcCcCceEEEECCCCCC
Confidence 789999999999988 888877777777654 789999999999876211 1222233333 34555689999999999
Q ss_pred hHHHHHHhccchHH
Q 007334 280 MTELYEALRPSVED 293 (607)
Q Consensus 280 i~eL~~~i~~~l~~ 293 (607)
+++|++.|.+.+++
T Consensus 162 v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 162 VDTIAAIVRKHLPE 175 (301)
T ss_dssp HHHHHHHHHTTCCB
T ss_pred HHHHHHHHHHhCCc
Confidence 99999999887653
No 76
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.85 E-value=4.1e-21 Score=180.34 Aligned_cols=149 Identities=19% Similarity=0.128 Sum_probs=108.6
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++.. ......++++.+.....+.+++ ..+.||||||..+.... ..
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------~~ 76 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNT-FSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTI----------TS 76 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSC----------CG
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCC-CCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhh----------HH
Confidence 35899999999999999999999764 3456677788888777888888 57889999996544211 12
Q ss_pred HHHhhccEEEEEeccchh-------------hHHhcCCcEEEEEeCccCCCCcCch-HHHHHHHHhcHHHHHhhCCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEV-------------RAVEEGRGLVVIVNKMDLLSGRQNS-ALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~-------------~~~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
.++..+|++++|+|++++ .....++|+++|+||+|+.+..... ..... +.. ..+
T Consensus 77 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~--------~~~----~~~ 144 (181)
T 3tw8_B 77 TYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYK--------FAG----QMG 144 (181)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHH--------HHH----HHT
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHH--------HHH----HcC
Confidence 356789999999999876 1112368999999999987643221 11111 111 125
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTYQKW 494 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~~~~ 494 (607)
++++++||++|.|++++|+.+.+.+.+.
T Consensus 145 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 172 (181)
T 3tw8_B 145 IQLFETSAKENVNVEEMFNCITELVLRA 172 (181)
T ss_dssp CCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 6899999999999999999998876543
No 77
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.85 E-value=5e-21 Score=186.80 Aligned_cols=164 Identities=19% Similarity=0.195 Sum_probs=114.1
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCC-ceeecCCCCceeeeEEEEEE-EcCeEEEEEecCCCcccccccC-cchhHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQED-RVLVGPEAGLTRDSVRVHFE-YQGRTVYLVDTAGWLQREKEKG-PASLSVMQSR 400 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~-~~~~~~~~gtT~~~~~~~~~-~~~~~~~liDTpG~~~~~~~~~-~~~~~~~~~~ 400 (607)
.++|+++|.+|||||||+|+|++.. ...+++.+|+|++.....+. .++..+.||||||+........ .+.+. ....
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~-~~~~ 107 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWE-QLLS 107 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHH-HHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHH-HHHH
Confidence 5799999999999999999999886 35788999999987655554 4567899999999765422111 11111 1222
Q ss_pred HHHhh---ccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhh--CCCCC
Q 007334 401 KNLMR---AHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTV--IPQVT 465 (607)
Q Consensus 401 ~~i~~---ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 465 (607)
.++.. +|++++|+|++++ .....++|+++|+||+|+.+........+.+.+ .+... .....
T Consensus 108 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~----~l~~~~~~~~~~ 183 (223)
T 4dhe_A 108 SYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQK----SLDAYRDAGYAG 183 (223)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHH----HHHHHHHHTCCS
T ss_pred HHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHH----HHHhhhhcccCC
Confidence 34444 8999999999864 222358999999999999865332222222222 22211 01124
Q ss_pred CCCEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 466 GIPVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 466 ~~~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
..+++++||++|.|++++++.|.+.+.
T Consensus 184 ~~~~~~~SA~~g~gv~~l~~~l~~~~~ 210 (223)
T 4dhe_A 184 KLTVQLFSALKRTGLDDAHALIESWLR 210 (223)
T ss_dssp CEEEEEEBTTTTBSHHHHHHHHHHHHC
T ss_pred CCeEEEeecCCCcCHHHHHHHHHHhcC
Confidence 678999999999999999999987654
No 78
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.85 E-value=4.7e-21 Score=182.94 Aligned_cols=159 Identities=13% Similarity=0.133 Sum_probs=117.7
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+++|.+|||||||+|+|++... ...... ++.+.....+...+ ..+.+|||||+. ++....
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~~--~~~~~~--t~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~ 88 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGEI--PTAYVP--TVFENFSHVMKYKNEEFILHLWDTAGQE----------EYDRLR 88 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC--CSSCCC--CSEEEEEEEEEETTEEEEEEEEEECCSG----------GGTTTG
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCC--CCccCC--eeeeeeEEEEEECCEEEEEEEEECCCcH----------HHHHHh
Confidence 36899999999999999999998764 222222 34444344445555 456999999987 233344
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH--HHHHHHHhhCCCCcEEEEecCCCcccC--CcCcHHHHHHHHHhcCCCCcEEee
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHN--GTGSLAGAAAESLMLGFGDPIAIS 273 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~i~iS 273 (607)
..++..+|++++|+|++++.+..+. .+...++....+.|+++|+||+|+... +....+.....+...+...++++|
T Consensus 89 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 168 (194)
T 3reg_A 89 PLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEAS 168 (194)
T ss_dssp GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECB
T ss_pred HhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEee
Confidence 5678899999999999987666552 355556555667999999999999864 334455555666677875599999
Q ss_pred cCCCCChHHHHHHhccchH
Q 007334 274 AETGLGMTELYEALRPSVE 292 (607)
Q Consensus 274 A~~g~gi~eL~~~i~~~l~ 292 (607)
|++|.|++++++.|.+.+.
T Consensus 169 a~~~~gi~~l~~~l~~~i~ 187 (194)
T 3reg_A 169 SVAKIGLNEVFEKSVDCIF 187 (194)
T ss_dssp TTTTBSHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHH
Confidence 9999999999999987664
No 79
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.85 E-value=1.3e-20 Score=178.13 Aligned_cols=148 Identities=21% Similarity=0.263 Sum_probs=106.8
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
..++|+++|.+|||||||+++|++.....+.++.|++. ..+.+++..+.+|||||+.+.. .....+
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~----~~~~~~~~~l~i~Dt~G~~~~~----------~~~~~~ 80 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNI----KSVQSQGFKLNVWDIGGQRKIR----------PYWRSY 80 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEE----EEEEETTEEEEEEECSSCGGGH----------HHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEE----EEEEECCEEEEEEECCCCHHHH----------HHHHHH
Confidence 35899999999999999999999886655666666543 3456778999999999964331 223467
Q ss_pred HhhccEEEEEeccchh-----------hHH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~-----------~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
+..+|++++|+|+++. ... ..++|+++|+||+|+.+.... +.+. ..+........+.
T Consensus 81 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~----~~~~----~~~~~~~~~~~~~ 152 (181)
T 1fzq_A 81 FENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPA----SEIA----EGLNLHTIRDRVW 152 (181)
T ss_dssp HTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCH----HHHH----HHTTGGGCCSSCE
T ss_pred hCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCH----HHHH----HHhCchhccCCce
Confidence 7899999999999874 011 247899999999999865321 1111 1111111223356
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
+++++||++|.|++++|+.+.+.+.
T Consensus 153 ~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (181)
T 1fzq_A 153 QIQSCSALTGEGVQDGMNWVCKNVN 177 (181)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHTC-
T ss_pred EEEEccCCCCCCHHHHHHHHHHHHH
Confidence 8999999999999999999987543
No 80
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.85 E-value=3.2e-21 Score=178.74 Aligned_cols=158 Identities=16% Similarity=0.176 Sum_probs=113.3
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+++|.+|||||||+|+|++...... ..+ +++.+.....+...+ ..+.+|||||+.. +...+
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~~--t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~ 71 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGIFTKD-YKK--TIGVDFLERQIQVNDEDVRLMLWDTAGQEE----------FDAIT 71 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCC-SSC--CCSSSEEEEEEEETTEEEEEEEECCTTGGG----------TTCCC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCCCC-CCC--ceEEEEEEEEEEECCEEEEEEEEcCCCcHh----------HHHHH
Confidence 46899999999999999999998764211 122 244455555555554 4799999999873 22334
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAET 276 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~ 276 (607)
..++..+|++++|+|++++.+..+. .+...+.....+.|+++|+||+|+...+....+.........++ +++++||++
T Consensus 72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 150 (168)
T 1z2a_A 72 KAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKL-RFYRTSVKE 150 (168)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTC-EEEECBTTT
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCC-eEEEEecCC
Confidence 5678899999999999886544432 23333333235789999999999987555444555555556676 889999999
Q ss_pred CCChHHHHHHhccch
Q 007334 277 GLGMTELYEALRPSV 291 (607)
Q Consensus 277 g~gi~eL~~~i~~~l 291 (607)
|.|++++++.|.+.+
T Consensus 151 ~~~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 151 DLNVSEVFKYLAEKH 165 (168)
T ss_dssp TBSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998755
No 81
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.85 E-value=9.1e-21 Score=181.44 Aligned_cols=159 Identities=19% Similarity=0.195 Sum_probs=113.5
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC------------------------------
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD------------------------------ 169 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~------------------------------ 169 (607)
..+|+|+|.+|||||||+|+|++.... .... .+++.+.....+.+.+
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~-~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDTFH--ENTN-TTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSCCC--SSCC-CCCSCEEEEEEEETTC------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCC--CCcC-ccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence 468999999999999999999987643 1111 1133444444444443
Q ss_pred ---------eeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhhCCCCcEEE
Q 007334 170 ---------LRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKHAPQIKPIV 239 (607)
Q Consensus 170 ---------~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~~~~~p~il 239 (607)
..+.+|||||+.. +...+..++..+|++++|+|++++.+..+. .+...+.... +.|+++
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~-~~piil 152 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQER----------YASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS-NYIIIL 152 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGGG----------CTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CCEEEE
T ss_pred ccccCccceeEEEEEECCCcHH----------HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC-CCcEEE
Confidence 7899999999872 333456678999999999999987655542 2333333322 489999
Q ss_pred EecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCChHHHHHHhccchHHH
Q 007334 240 AMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSVEDY 294 (607)
Q Consensus 240 V~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi~eL~~~i~~~l~~~ 294 (607)
|+||+| ........++....+...+. +++++||++|.|+++++++|.+.+.++
T Consensus 153 v~NK~D-~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 205 (208)
T 3clv_A 153 VANKID-KNKFQVDILEVQKYAQDNNL-LFIQTSAKTGTNIKNIFYMLAEEIYKN 205 (208)
T ss_dssp EEECTT-CC-CCSCHHHHHHHHHHTTC-EEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEECCC-cccccCCHHHHHHHHHHcCC-cEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 999999 44344445555556666676 889999999999999999998876543
No 82
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.85 E-value=5.3e-21 Score=183.78 Aligned_cols=161 Identities=19% Similarity=0.192 Sum_probs=113.2
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+|+|.+|||||||+|+|++....... .+. ++.+.....+..++ ..+.+|||||+. ++...+
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~-~~t--~~~~~~~~~~~~~~~~~~l~l~Dt~G~~----------~~~~~~ 91 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIENKFKQDS-NHT--IGVEFGSRVVNVGGKTVKLQIWDTAGQE----------RFRSVT 91 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC---------------CCEEEEEEEETTEEEEEEEECCTTHH----------HHSCCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCccC-CCc--ccceeEEEEEEECCeeeEEEEEcCCCcH----------hHHHHH
Confidence 468999999999999999999987653322 222 44455555555555 689999999986 343445
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..++..+|++|+|+|++++.+..+. .+...+... ..+.|+++|+||+|+...+.....+....+...++ .++++||+
T Consensus 92 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~SA~ 170 (200)
T 2o52_A 92 RSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENEL-MFLETSAL 170 (200)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEEEECTT
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCC-EEEEEeCC
Confidence 6678999999999999986555442 122223322 35789999999999986555544555555556666 78999999
Q ss_pred CCCChHHHHHHhccchHHH
Q 007334 276 TGLGMTELYEALRPSVEDY 294 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~~~ 294 (607)
+|.|++++++.|.+.+.+.
T Consensus 171 ~g~gi~~l~~~l~~~i~~~ 189 (200)
T 2o52_A 171 TGENVEEAFLKCARTILNK 189 (200)
T ss_dssp TCTTHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999998877654
No 83
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.85 E-value=8e-21 Score=178.32 Aligned_cols=159 Identities=18% Similarity=0.191 Sum_probs=114.5
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
.++|+++|.+|||||||+|+|++... ...... ++.+.....+..++ ..+.+|||||+... ....
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~~~--~~~~~~--t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~----------~~~~ 74 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQSYF--VSDYDP--TIEDSYTKICSVDGIPARLDILDTAGQEEF----------GAMR 74 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSC--CSSCCT--TCCEEEEEEEEETTEEEEEEEEECCCTTTT----------SCCH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcC--ccccCC--CcCceEEEEEEECCEEEEEEEEECCCchhh----------HHHH
Confidence 46899999999999999999998754 333333 45444445555665 47889999998732 2233
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHH-Hhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeec
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWL-RKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISA 274 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l-~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA 274 (607)
..++..+|++++|+|++++.+.... .+...+ +.. ..+.|+++|+||+|+...+..............+. +++++||
T Consensus 75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa 153 (181)
T 2fn4_A 75 EQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHV-AYFEASA 153 (181)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEEECBT
T ss_pred HHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCC-eEEEecC
Confidence 4567889999999999986544432 122222 222 34789999999999987655544544445555666 7899999
Q ss_pred CCCCChHHHHHHhccchHH
Q 007334 275 ETGLGMTELYEALRPSVED 293 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~~l~~ 293 (607)
++|.|++++++.|.+.+.+
T Consensus 154 ~~~~gv~~l~~~l~~~~~~ 172 (181)
T 2fn4_A 154 KLRLNVDEAFEQLVRAVRK 172 (181)
T ss_dssp TTTBSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999887754
No 84
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.85 E-value=2.5e-21 Score=184.04 Aligned_cols=161 Identities=16% Similarity=0.223 Sum_probs=114.2
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC--CeeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG--DLRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+|+|.+|||||||+|+|++....... .+. .+.+.....+... +..+.+|||||+.... ..+
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-~~t--~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~ 88 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAF-VST--VGIDFKVKTVYRHDKRIKLQIWDTAGQERYR----------TIT 88 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSC-CCC--CCCEEEEEEEEETTEEEEEEEEECCSCCSSC----------CSG
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCc-CCc--eeEEEEEEEEEECCeEEEEEEEeCCCcHHHh----------hhH
Confidence 468999999999999999999987653221 122 2223333333333 4689999999987322 223
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..++..+|++++|+|++++.+..+. .+...+... ..+.|+++|+||+|+...+....+.........++ +++++||+
T Consensus 89 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 167 (189)
T 2gf9_A 89 TAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGF-EFFEASAK 167 (189)
T ss_dssp GGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEEECBTT
T ss_pred HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCC-eEEEEECC
Confidence 4567899999999999886554442 233334333 24789999999999987655544455555556676 78999999
Q ss_pred CCCChHHHHHHhccchHHH
Q 007334 276 TGLGMTELYEALRPSVEDY 294 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~~~ 294 (607)
+|.|++++++.|.+.+.+.
T Consensus 168 ~g~gi~~l~~~l~~~i~~~ 186 (189)
T 2gf9_A 168 ENINVKQVFERLVDVICEK 186 (189)
T ss_dssp TTBSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999877653
No 85
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.85 E-value=3.2e-21 Score=179.14 Aligned_cols=159 Identities=18% Similarity=0.228 Sum_probs=111.6
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+++|.+|||||||+|+|++..... ...+. ++.+.....+.+.+ ..+.+|||||+... ...+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~----------~~~~ 69 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNP-SFITT--IGIDFKIKTVDINGKKVKLQIWDTAGQERF----------RTIT 69 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC----------CCEEEEEEESSSCEEEEEEECCTTGGGT----------SCCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCC-CCCCc--cceeEEEEEEEECCEEEEEEEEeCCCChhh----------hhhH
Confidence 3589999999999999999999876431 22222 55555555556554 57899999998732 2234
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..++..+|++++|+|++++.+..+. .+...+... ..+.|+++|+||+|+.. +....+.........++ +++++||+
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~-~~~~~Sa~ 147 (170)
T 1g16_A 70 TAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET-RVVTADQGEALAKELGI-PFIESSAK 147 (170)
T ss_dssp HHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT-CCSCHHHHHHHHHHHTC-CEEECBTT
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCc-CccCHHHHHHHHHHcCC-eEEEEECC
Confidence 5677899999999999886554442 233333333 34789999999999943 33333444444555676 78999999
Q ss_pred CCCChHHHHHHhccchHH
Q 007334 276 TGLGMTELYEALRPSVED 293 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~~ 293 (607)
+|.|++++++.|.+.+.+
T Consensus 148 ~~~gv~~l~~~l~~~~~~ 165 (170)
T 1g16_A 148 NDDNVNEIFFTLAKLIQE 165 (170)
T ss_dssp TTBSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999887754
No 86
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.85 E-value=2.1e-20 Score=176.85 Aligned_cols=159 Identities=18% Similarity=0.219 Sum_probs=114.2
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCee--EEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLR--FKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.+|||||||+|+|++... ....++ ++.+.....+..++.. +.+|||||+. ++.....
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~--t~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~ 70 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNHF--VDEYDP--TIEDSYRKQVVIDGETCLLDILDTAGQE----------EYSAMRD 70 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSC--CCCCCT--TCCEEEEEEEEETTEEEEEEEEECCCC-------------CTTHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC--CCCCCC--CchheEEEEEEECCcEEEEEEEECCCcH----------HHHHHHH
Confidence 5899999999999999999998764 333333 5555555556666654 7789999987 3334455
Q ss_pred HHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
.++..+|++++|+|++++.+..+. .+...+... ..+.|+++|+||+|+.... ...+.........+. +++++||+
T Consensus 71 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~-~~~~~~~~~~~~~~~-~~~~~Sa~ 148 (189)
T 4dsu_A 71 QYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRT-VDTKQAQDLARSYGI-PFIETSAK 148 (189)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCS-SCHHHHHHHHHHHTC-CEEECCTT
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccc-cCHHHHHHHHHHcCC-eEEEEeCC
Confidence 678889999999999986554442 233333332 3478999999999997532 333444445555666 78999999
Q ss_pred CCCChHHHHHHhccchHHHH
Q 007334 276 TGLGMTELYEALRPSVEDYM 295 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~~~~ 295 (607)
+|.|++++++.|.+.+....
T Consensus 149 ~g~gi~~l~~~l~~~~~~~~ 168 (189)
T 4dsu_A 149 TRQGVDDAFYTLVREIRKHK 168 (189)
T ss_dssp TCTTHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhh
Confidence 99999999999998886643
No 87
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.84 E-value=7.7e-21 Score=178.75 Aligned_cols=160 Identities=18% Similarity=0.206 Sum_probs=114.0
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC--CeeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG--DLRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+++|.+|||||||+|+|++....... .+. ++.+.....+.+. ...+.+|||||+. ++...+
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~ 78 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKDQFVEFQ-EST--IGAAFFSQTLAVNDATVKFEIWDTAGQE----------RYHSLA 78 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCTTTS-CCC--SCCSEEEEEEEETTEEEEEEEEECCCSG----------GGGGGT
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCcC-CCC--ceeEEEEEEEEECCEEEEEEEEeCCCCh----------hhhhhh
Confidence 368999999999999999999987643211 122 3333333444444 3589999999987 233345
Q ss_pred HHHhhccCEEEEEEecCCCCCHhH-HHHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLD-LEVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~-~~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..++..+|++++|+|++++.+..+ ..+...+... .++.|+++|+||+|+...+....+.....+...++ +++++||+
T Consensus 79 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 157 (181)
T 2efe_B 79 PMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGL-FFMETSAK 157 (181)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTC-EEEECCSS
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCC-EEEEEECC
Confidence 567899999999999988655443 2233333333 34789999999999987655545555555556666 78999999
Q ss_pred CCCChHHHHHHhccchHH
Q 007334 276 TGLGMTELYEALRPSVED 293 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~~ 293 (607)
+|.|++++++.|.+.+..
T Consensus 158 ~g~gi~~l~~~l~~~~~~ 175 (181)
T 2efe_B 158 TATNVKEIFYEIARRLPR 175 (181)
T ss_dssp SCTTHHHHHHHHHHTCC-
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999877643
No 88
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.84 E-value=2.2e-21 Score=181.92 Aligned_cols=159 Identities=14% Similarity=0.098 Sum_probs=113.4
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC---eeEEEecCCCCccccCchhHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD---LRFKVLDSAGLETEATSGSILDRTAGM 196 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~---~~~~liDTpG~~~~~~~~~~~~~~~~~ 196 (607)
..+|+++|.+|||||||+|+|++..... ...+. ++.+.....+.+.+ ..+.+|||||+.. +...
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~~~~~-~~~~t--~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~----------~~~~ 72 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQETFGK-QYKQT--IGLDFFLRRITLPGNLNVTLQIWDIGGQTI----------GGKM 72 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGGGTTH-HHHHT--TTSSEEEEEEEETTTEEEEEEEEECTTCCT----------TCTT
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCcCCC-CCCCc--eeEEEEEEEEEeCCCCEEEEEEEECCCCcc----------ccch
Confidence 3689999999999999999999876421 11121 33455556666655 7899999999873 2233
Q ss_pred HHHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh---CCCCc-EEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEE
Q 007334 197 TANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH---APQIK-PIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIA 271 (607)
Q Consensus 197 ~~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~---~~~~p-~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (607)
+..++..+|++++|+|++++.+..+. .+...+... ..+.| +++|+||+|+...+....+.........++ ++++
T Consensus 73 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~ 151 (178)
T 2hxs_A 73 LDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGF-SSHF 151 (178)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTC-EEEE
T ss_pred hhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCC-cEEE
Confidence 45678999999999999986655442 233333331 12456 789999999987554444444445555676 7899
Q ss_pred eecCCCCChHHHHHHhccchH
Q 007334 272 ISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 272 iSA~~g~gi~eL~~~i~~~l~ 292 (607)
+||++|.|++++++.|.+.+.
T Consensus 152 ~Sa~~~~gi~~l~~~l~~~~~ 172 (178)
T 2hxs_A 152 VSAKTGDSVFLCFQKVAAEIL 172 (178)
T ss_dssp ECTTTCTTHHHHHHHHHHHHT
T ss_pred EeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999987664
No 89
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.84 E-value=8.5e-21 Score=180.99 Aligned_cols=151 Identities=21% Similarity=0.223 Sum_probs=111.6
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++.. ......++++.+.....+.+++ ..+.||||||..+.. ....
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~ 83 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDT-YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR----------TITS 83 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC-CCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGC----------TTHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC-CCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhh----------hhHH
Confidence 35899999999999999999999764 4455667777787777788877 467899999965432 1134
Q ss_pred HHHhhccEEEEEeccchhh----------HH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEVR----------AV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~----------~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
.+++.+|++|+|+|+++.. .. ..++|+++|+||+|+.+...... +.. .++.. ..+
T Consensus 84 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~--~~~-----~~~~~----~~~ 152 (196)
T 3tkl_A 84 SYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDY--TTA-----KEFAD----SLG 152 (196)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCH--HHH-----HHHHH----HTT
T ss_pred HHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCH--HHH-----HHHHH----HcC
Confidence 5778899999999998751 01 23789999999999986543221 010 11111 125
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHHHHHh
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTYQKWC 495 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~~~~~ 495 (607)
++++++||++|.|++++|+.+.+.+.+..
T Consensus 153 ~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~ 181 (196)
T 3tkl_A 153 IPFLETSAKNATNVEQSFMTMAAEIKKRM 181 (196)
T ss_dssp CCEEEECTTTCTTHHHHHHHHHHHHHHHC
T ss_pred CcEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 79999999999999999999988776543
No 90
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.84 E-value=6.1e-21 Score=175.73 Aligned_cols=147 Identities=27% Similarity=0.346 Sum_probs=103.3
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHh
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLM 404 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~ 404 (607)
.+|+++|.+|||||||+|+|++.....+.+.+++|.+.....+.+++..+.||||||+..... ...........++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---~~~~~~~~~~~~~~ 78 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDK---WEKKIQEKVDRALE 78 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSS---CCHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccc---hHHHHHHHHHHHHH
Confidence 479999999999999999999887666788899999998888889999999999999765321 11112233456778
Q ss_pred hccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC-CEEEcc
Q 007334 405 RAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI-PVVFTS 473 (607)
Q Consensus 405 ~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~iS 473 (607)
.+|++++|+|+++. .....++|+++|+||+|+.+... .. .+ +.. .+. +++++|
T Consensus 79 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~----~~-~~~-~~~~~~~~~S 142 (161)
T 2dyk_A 79 DAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHEL----------YL----GP-LYG-LGFGDPIPTS 142 (161)
T ss_dssp TCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGGG----------GC----GG-GGG-GSSCSCEECB
T ss_pred hCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccchH----------hH----HH-HHh-CCCCCeEEEe
Confidence 99999999999874 12235899999999999975421 00 01 111 133 799999
Q ss_pred cCCCCCHHHHHHHHHHH
Q 007334 474 ALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 474 A~~g~gv~~l~~~i~~~ 490 (607)
|++|.|++++|+.+.+.
T Consensus 143 a~~~~gv~~l~~~l~~~ 159 (161)
T 2dyk_A 143 SEHARGLEELLEAIWER 159 (161)
T ss_dssp TTTTBSHHHHHHHHHHH
T ss_pred cccCCChHHHHHHHHHh
Confidence 99999999999988764
No 91
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.84 E-value=4.7e-21 Score=178.17 Aligned_cols=159 Identities=20% Similarity=0.190 Sum_probs=110.6
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+++|.+|||||||+|+|++..... ...+. ++.+.....+..++ ..+.+|||||+. ++....
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~t--~~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~ 72 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENKFND-KHITT--LGASFLTKKLNIGGKRVNLAIWDTAGQE----------RFHALG 72 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCCS-SCCCC--CSCEEEEEEEESSSCEEEEEEEECCCC-----------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCc-CCCCc--cceEEEEEEEEECCEEEEEEEEECCCcH----------hhhhhH
Confidence 3689999999999999999999876421 11222 44444444455444 478999999987 344444
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHHH-HHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..++..+|++++|+|++++.+..+.. +...+... ..+.|+++|+||+|+...+....+.....+...+. +++++||+
T Consensus 73 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 151 (170)
T 1z08_A 73 PIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGA-KHYHTSAK 151 (170)
T ss_dssp CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEEEEBTT
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCC-eEEEecCC
Confidence 56788999999999998865544321 22223322 24789999999999987655555555555666675 78999999
Q ss_pred CCCChHHHHHHhccchH
Q 007334 276 TGLGMTELYEALRPSVE 292 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~ 292 (607)
+|.|++++++.|.+.+.
T Consensus 152 ~~~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 152 QNKGIEELFLDLCKRMI 168 (170)
T ss_dssp TTBSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999987653
No 92
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=6.9e-21 Score=177.08 Aligned_cols=157 Identities=18% Similarity=0.191 Sum_probs=108.5
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC--CeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG--DLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.+|||||||+|+|++....... .+ +............ ...+.+|||||+. ++.....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~-~~---t~~~~~~~~~~~~~~~~~~~~~Dt~G~~----------~~~~~~~ 69 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESY-IP---TVEDTYRQVISCDKSICTLQITDTTGSH----------QFPAMQR 69 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCCCSSC-CC---CSCEEEEEEEEETTEEEEEEEEECCSCS----------SCHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCC-CC---CccccEEEEEEECCEEEEEEEEECCCch----------hhHHHHH
Confidence 58999999999999999999986542111 11 1111111222223 3578999999987 2334456
Q ss_pred HHhhccCEEEEEEecCCCCCHhH-HHHHHHHHhh---CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeec
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLD-LEVGKWLRKH---APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISA 274 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~-~~~~~~l~~~---~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA 274 (607)
.++..+|++++|+|++++.+..+ ..+...+.+. .++.|+++|+||+|+...+..............+. +++++||
T Consensus 70 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa 148 (172)
T 2erx_A 70 LSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKC-AFMETSA 148 (172)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTC-EEEECBT
T ss_pred HhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCC-eEEEecC
Confidence 67888999999999997654443 2334444433 24789999999999987655544444444455565 7899999
Q ss_pred CCCCChHHHHHHhccchH
Q 007334 275 ETGLGMTELYEALRPSVE 292 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~~l~ 292 (607)
++|.|+++++++|.+.+.
T Consensus 149 ~~~~gi~~l~~~l~~~~~ 166 (172)
T 2erx_A 149 KLNHNVKELFQELLNLEK 166 (172)
T ss_dssp TTTBSHHHHHHHHHHTCC
T ss_pred CCCcCHHHHHHHHHHHHh
Confidence 999999999999987653
No 93
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.84 E-value=3.2e-20 Score=175.62 Aligned_cols=147 Identities=24% Similarity=0.289 Sum_probs=107.7
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeE--EEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRT--VYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.++|+++|.+|||||||+|+|++.. ....+++++.+.....+.+++.. +.||||||..+... ....
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------~~~~ 71 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA----------MRDQ 71 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS--CCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CT----------THHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHH----------HHHH
Confidence 5899999999999999999999764 35566777777777777777765 56799999654421 1235
Q ss_pred HHhhccEEEEEeccchh-----------hHH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~-----------~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
++..+|++++|+|+++. ... ..++|+++|+||+|+.+.....+....+. .. .+
T Consensus 72 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~----~~--------~~ 139 (189)
T 4dsu_A 72 YMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLA----RS--------YG 139 (189)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHH----HH--------HT
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHH----HH--------cC
Confidence 67789999999999875 011 13789999999999985433322222221 11 15
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTYQKW 494 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~~~~ 494 (607)
++++++||++|.|++++|+.+.+.+.+.
T Consensus 140 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 167 (189)
T 4dsu_A 140 IPFIETSAKTRQGVDDAFYTLVREIRKH 167 (189)
T ss_dssp CCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 6899999999999999999998877543
No 94
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=4.3e-21 Score=183.08 Aligned_cols=158 Identities=14% Similarity=0.113 Sum_probs=114.5
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+++|.+|||||||+|+|++... ...... ++.+.....+..++ ..+.+|||||+... ....
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~~~--~~~~~~--t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----------~~~~ 83 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYANDAF--PEEYVP--TVFDHYAVSVTVGGKQYLLGLYDTAGQEDY----------DRLR 83 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSC--CCSCCC--SSCCCEEEEEESSSCEEEEEEECCCCSSSS----------TTTG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCC--cccceeEEEEEECCEEEEEEEEECCCCcch----------hHHH
Confidence 46899999999999999999998754 222232 44444444455555 67899999998732 2233
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH--HHHHHHHhhCCCCcEEEEecCCCcccC------------CcCcHHHHHHHHHh
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHN------------GTGSLAGAAAESLM 263 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~D~~~~------------~~~~~~~~~~~~~~ 263 (607)
..++..+|++++|+|++++.+..+. .+...+.+..++.|+++|+||+|+... +....++....+..
T Consensus 84 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 163 (194)
T 2atx_A 84 PLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKE 163 (194)
T ss_dssp GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHH
T ss_pred HHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHH
Confidence 4567899999999999987655542 344555555568999999999999763 12334444445555
Q ss_pred cCCCCcEEeecCCCCChHHHHHHhccch
Q 007334 264 LGFGDPIAISAETGLGMTELYEALRPSV 291 (607)
Q Consensus 264 ~~~~~~i~iSA~~g~gi~eL~~~i~~~l 291 (607)
.+..+++++||++|.|++++++.|.+.+
T Consensus 164 ~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 164 IGACCYVECSALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp HTCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 6665789999999999999999987654
No 95
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=1e-20 Score=183.56 Aligned_cols=161 Identities=18% Similarity=0.174 Sum_probs=113.2
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCe--eEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDL--RFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+|||.+|||||||+|+|++....++...+. ++.+.....+.+++. .+.+|||+|+.. ......
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~--~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~---------~~~~l~ 105 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEV--LGEDTYERTLMVDGESATIILLDMWENKG---------ENEWLH 105 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC-----CCTTEEEEEEEETTEEEEEEEECCTTTTH---------HHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCc--cceeeEEEEEEECCeeeEEEEeecCCCcc---------hhhhHH
Confidence 3689999999999999999999765444443333 445554555556664 568899999871 122233
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeec
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISA 274 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA 274 (607)
..+++.+|++++|+|+++..+.... .+...+.+. ..+.|+++|+||+|+...+....++....+...+. +++++||
T Consensus 106 ~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~-~~~e~SA 184 (211)
T 2g3y_A 106 DHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDC-KFIETSA 184 (211)
T ss_dssp HCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEEECBT
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCC-EEEEEeC
Confidence 4467789999999999986555542 233334332 24789999999999987555544444444455565 7899999
Q ss_pred CCCCChHHHHHHhccchH
Q 007334 275 ETGLGMTELYEALRPSVE 292 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~~l~ 292 (607)
++|.|++++|+.|.+.+.
T Consensus 185 k~g~~v~elf~~l~~~i~ 202 (211)
T 2g3y_A 185 AVQHNVKELFEGIVRQVR 202 (211)
T ss_dssp TTTBSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999987664
No 96
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.84 E-value=6.1e-22 Score=207.88 Aligned_cols=171 Identities=26% Similarity=0.339 Sum_probs=123.6
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
..++|+++|.+|||||||+|+|++.. ..+.+.+++|.+.....+..++..+.+|||||+.+..... ..... .+...+
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-~~~~~-~~~~~~ 242 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK-PEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISE-RNEIE-KQAILA 242 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC-CEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTT-SCHHH-HHHHHG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhh-hhHHH-HHHHHH
Confidence 35799999999999999999999875 5677889999988888888888999999999987652211 11111 122222
Q ss_pred -HhhccEEEEEeccchh------------hHHh---cCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 403 -LMRAHVVALVLDAEEV------------RAVE---EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 403 -i~~ad~~llViD~~~~------------~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
...+|++++|+|++.. .... .++|+++|+||+|+..... .+...+ ... ..+
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~----~~~~~~----~~~-----~~~ 309 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEEN----IKRLEK----FVK-----EKG 309 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHH----HHHHHH----HHH-----HTT
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHH----HHHHHH----HHH-----hcC
Confidence 2359999999997652 1111 2899999999999976421 111111 111 125
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWLRK 509 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~~l~~~l~~ 509 (607)
.+++++||++|+|++++++.+.+.+.....++..+.++++++.
T Consensus 310 ~~~~~iSA~~g~gi~~l~~~i~~~l~~~~~~~~~~~~~~~l~r 352 (357)
T 2e87_A 310 LNPIKISALKGTGIDLVKEEIIKTLRPLAEKVAREKIERELRR 352 (357)
T ss_dssp CCCEECBTTTTBTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCeEEEeCCCCcCHHHHHHHHHHHHHHHHhhhcchhHHHHHHh
Confidence 6899999999999999999999988777666667777777654
No 97
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.84 E-value=2.5e-20 Score=186.48 Aligned_cols=160 Identities=24% Similarity=0.281 Sum_probs=119.5
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
.++|+++|.+|||||||+|+|++.... +++.|+ +|.+...+.+...+..+.+|||||+....+.... + ..+..
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~~~-~~~~pg--~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--e--~v~~~ 77 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTKQY-VANWPG--VTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSID--E--KIARD 77 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTCEE-EEECTT--SCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHH--H--HHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCc-ccCCCC--ceEEEEEEEEEECCeEEEEEECCCcCccCCCCHH--H--HHHHH
Confidence 368999999999999999999997754 677887 8999888888888999999999999855432211 1 12233
Q ss_pred Hh--hccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCC
Q 007334 200 VL--AKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETG 277 (607)
Q Consensus 200 ~~--~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g 277 (607)
++ ..+|++++|+|+++.. ....+...+.+. +.|+++|+||+|+...+..... .......+|+ +++++||++|
T Consensus 78 ~~~~~~~d~ii~V~D~t~~~--~~~~~~~~l~~~--~~pvilv~NK~Dl~~~~~i~~~-~~~l~~~lg~-~vi~~SA~~g 151 (258)
T 3a1s_A 78 YLLKGDADLVILVADSVNPE--QSLYLLLEILEM--EKKVILAMTAIDEAKKTGMKID-RYELQKHLGI-PVVFTSSVTG 151 (258)
T ss_dssp HHHHSCCSEEEEEEETTSCH--HHHHHHHHHHTT--TCCEEEEEECHHHHHHTTCCBC-HHHHHHHHCS-CEEECCTTTC
T ss_pred HHhhcCCCEEEEEeCCCchh--hHHHHHHHHHhc--CCCEEEEEECcCCCCccchHHH-HHHHHHHcCC-CEEEEEeeCC
Confidence 33 5899999999998742 223344445444 7899999999999764432221 2233445676 8899999999
Q ss_pred CChHHHHHHhccchH
Q 007334 278 LGMTELYEALRPSVE 292 (607)
Q Consensus 278 ~gi~eL~~~i~~~l~ 292 (607)
.|+++|++.|.+.++
T Consensus 152 ~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 152 EGLEELKEKIVEYAQ 166 (258)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhh
Confidence 999999999987553
No 98
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.84 E-value=3.5e-21 Score=185.73 Aligned_cols=157 Identities=15% Similarity=0.117 Sum_probs=115.4
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCe--eEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDL--RFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+++|.+|||||||+|+|++... ...... ++.+.....+..++. .+.+|||||++. +....
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~~~--~~~~~~--t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~ 95 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIP--TVFDNYSANVMVDGKPVNLGLWDTAGLED----------YDRLR 95 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCC--CC-CCC--CSEEEEEEEEECC-CEEEEEEEEECCSGG----------GTTTG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCCC--CCCcCC--eecceeEEEEEECCEEEEEEEEECCCchh----------hHHHH
Confidence 46899999999999999999997654 233333 555555555555554 456999999972 33344
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH--HHHHHHHhhCCCCcEEEEecCCCcccCCc------------CcHHHHHHHHHh
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHNGT------------GSLAGAAAESLM 263 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~D~~~~~~------------~~~~~~~~~~~~ 263 (607)
..++..+|++++|+|++++.+..+. .+...+....++.|+++|+||+|+..... .........+..
T Consensus 96 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 175 (204)
T 4gzl_A 96 PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKE 175 (204)
T ss_dssp GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHH
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHh
Confidence 5578899999999999987666653 35555655556899999999999986432 233444455566
Q ss_pred cCCCCcEEeecCCCCChHHHHHHhccc
Q 007334 264 LGFGDPIAISAETGLGMTELYEALRPS 290 (607)
Q Consensus 264 ~~~~~~i~iSA~~g~gi~eL~~~i~~~ 290 (607)
.+..+++++||++|.|++++++.|.+.
T Consensus 176 ~~~~~~~~~SA~~g~gi~~l~~~l~~~ 202 (204)
T 4gzl_A 176 IGAVKYLECSALTQRGLKTVFDEAIRA 202 (204)
T ss_dssp TTCSEEEECCTTTCTTHHHHHHHHHHT
T ss_pred cCCcEEEEeeCCCCCCHHHHHHHHHHH
Confidence 676568999999999999999998764
No 99
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.84 E-value=2e-20 Score=176.44 Aligned_cols=158 Identities=16% Similarity=0.166 Sum_probs=113.5
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCe--eEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDL--RFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+|+|.+|||||||+|+|++.... ..... ++.+.........+. .+.+|||||+.. +....
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~ 83 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQKIFV--DDYDP--TIEDSYLKHTEIDNQWAILDVLDTAGQEE----------FSAMR 83 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC--SCCCT--TCCEEEEEEEEETTEEEEEEEEECCSCGG----------GCSSH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCC--CCCCC--CccceeEEEEEeCCcEEEEEEEECCCchh----------hHHHH
Confidence 468999999999999999999976542 22222 333333455555554 466799999873 22334
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeec
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISA 274 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA 274 (607)
..++..+|++++|+|++++.+.... .+...+... ..+.|+++|+||+|+...+....+.........+. +++++||
T Consensus 84 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa 162 (183)
T 3kkq_A 84 EQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNI-PYIETSA 162 (183)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTC-CEEEEBC
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCC-eEEEecc
Confidence 5677889999999999986554442 222223221 34789999999999987666655656666666676 7899999
Q ss_pred C-CCCChHHHHHHhccchH
Q 007334 275 E-TGLGMTELYEALRPSVE 292 (607)
Q Consensus 275 ~-~g~gi~eL~~~i~~~l~ 292 (607)
+ +|.|++++++.|.+.+.
T Consensus 163 ~~~~~~v~~l~~~l~~~i~ 181 (183)
T 3kkq_A 163 KDPPLNVDKTFHDLVRVIR 181 (183)
T ss_dssp SSSCBSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 9 99999999999987664
No 100
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.84 E-value=1.1e-20 Score=177.29 Aligned_cols=150 Identities=21% Similarity=0.180 Sum_probs=109.1
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++. .....+.+++.+.....+.+++. .+.||||||..+... ...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~----------~~~ 75 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS--YFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGA----------MRE 75 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS--SCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSC----------CHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC--cCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHH----------HHH
Confidence 3589999999999999999999986 34456677777766666777775 677899999754421 123
Q ss_pred HHHhhccEEEEEeccchh-----------hH----HhcCCcEEEEEeCccCCCCcCch-HHHHHHHHhcHHHHHhhCCCC
Q 007334 401 KNLMRAHVVALVLDAEEV-----------RA----VEEGRGLVVIVNKMDLLSGRQNS-ALYKRVKEAVPQEIQTVIPQV 464 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~-----------~~----~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 464 (607)
.++..+|++++|+|+++. .. ...++|+++|+||+|+.+..... +... .+.. .
T Consensus 76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~--------~~~~----~ 143 (181)
T 2fn4_A 76 QYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEAS--------AFGA----S 143 (181)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHH--------HHHH----H
T ss_pred HHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHH--------HHHH----H
Confidence 466789999999999875 11 12478999999999997643221 1111 1111 1
Q ss_pred CCCCEEEcccCCCCCHHHHHHHHHHHHHHHhc
Q 007334 465 TGIPVVFTSALEGRGRIAVMHQVIDTYQKWCL 496 (607)
Q Consensus 465 ~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~ 496 (607)
.+++++++||++|.|++++|+.|.+.+.++..
T Consensus 144 ~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~ 175 (181)
T 2fn4_A 144 HHVAYFEASAKLRLNVDEAFEQLVRAVRKYQE 175 (181)
T ss_dssp TTCEEEECBTTTTBSHHHHHHHHHHHHHHHTT
T ss_pred cCCeEEEecCCCCCCHHHHHHHHHHHHHHhhc
Confidence 25689999999999999999999887765443
No 101
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.84 E-value=1.1e-20 Score=181.35 Aligned_cols=160 Identities=17% Similarity=0.158 Sum_probs=108.1
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHH
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGM 196 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~ 196 (607)
...+|+|+|.+|||||||+|+|++....... .+. .+.+.....+.+++ ..+.+|||||+. ++...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~t--~~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~ 93 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENI-SAT--LGVDFQMKTLIVDGERTVLQLWDTAGQE----------RFRSI 93 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC-------------CEEEEEEETTEEEEEEEEECTTCT----------TCHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccC-CCC--ccceeEEEEEEECCEEEEEEEEECCCCc----------chhhh
Confidence 3579999999999999999999987642111 111 22233333344444 579999999987 34445
Q ss_pred HHHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCccc------CCcCcHHHHHHHHHhcCCCC
Q 007334 197 TANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLH------NGTGSLAGAAAESLMLGFGD 268 (607)
Q Consensus 197 ~~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~------~~~~~~~~~~~~~~~~~~~~ 268 (607)
+..++..+|++|+|+|++++.+..+. .+...+... ..+.|+++|+||+|+.. .+....+.....+...+. +
T Consensus 94 ~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~-~ 172 (199)
T 2p5s_A 94 AKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGA-L 172 (199)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTC-E
T ss_pred HHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCC-e
Confidence 66788999999999999886655542 233334333 24789999999999973 223333444444555666 7
Q ss_pred cEEeecCCCCChHHHHHHhccchH
Q 007334 269 PIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 269 ~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
++++||++|.|++++++.|.+.+.
T Consensus 173 ~~~~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 173 FCETSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHT
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHH
Confidence 899999999999999999987653
No 102
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=1.8e-20 Score=179.19 Aligned_cols=158 Identities=22% Similarity=0.205 Sum_probs=113.2
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+++|.+|||||||+|+|++...... ... ++.+.....+...+ ..+.+|||||+.. ....
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-----------~~~~ 92 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTKRFIWE--YDP--TLESTYRHQATIDDEVVSMEILDTAGQED-----------TIQR 92 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCCSC--CCT--TCCEEEEEEEEETTEEEEEEEEECCCCCC-----------CHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCcc--cCC--CCCceEEEEEEECCEEEEEEEEECCCCCc-----------ccch
Confidence 46899999999999999999998765322 222 22222233344443 5799999999983 2234
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeec
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISA 274 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA 274 (607)
..++..+|++++|+|++++.+..+. .+...+... ..+.|+++|+||+|+...+....+.........++ +++++||
T Consensus 93 ~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa 171 (196)
T 2atv_A 93 EGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELAC-AFYECSA 171 (196)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTS-EEEECCT
T ss_pred hhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCC-eEEEECC
Confidence 5678899999999999986555442 233334332 34789999999999987655544555555555666 7899999
Q ss_pred CCCC-ChHHHHHHhccchHH
Q 007334 275 ETGL-GMTELYEALRPSVED 293 (607)
Q Consensus 275 ~~g~-gi~eL~~~i~~~l~~ 293 (607)
++|. |++++++.|.+.+.+
T Consensus 172 ~~g~~gi~~l~~~l~~~i~~ 191 (196)
T 2atv_A 172 CTGEGNITEIFYELCREVRR 191 (196)
T ss_dssp TTCTTCHHHHHHHHHHHHHH
T ss_pred CcCCcCHHHHHHHHHHHHHh
Confidence 9999 999999999877654
No 103
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.84 E-value=2.1e-20 Score=175.03 Aligned_cols=159 Identities=18% Similarity=0.139 Sum_probs=112.0
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
.++|+++|.+|||||||+|+|++..... ...+. ++.+.....+.+++ ..+.+|||||+. ++....
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~ 73 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNKFDT-QLFHT--IGVEFLNKDLEVDGHFVTMQIWDTAGQE----------RFRSLR 73 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCC-----C--CSEEEEEEEEEETTEEEEEEEEECCCCG----------GGHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCc--eeeeEEEEEEEECCEEEEEEEEeCCCch----------hhhhhH
Confidence 4689999999999999999999876431 12222 44555555556665 489999999987 344555
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-C----CCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEE
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-A----PQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIA 271 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~----~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (607)
..++..+|++++|+|++++.+..+. .+...+... . .+.|+++|+||+|+.. .....+.....+......++++
T Consensus 74 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~ 152 (177)
T 1wms_A 74 TPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFE 152 (177)
T ss_dssp GGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS-CSSCHHHHHHHHHHTTCCCEEE
T ss_pred HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccc-cccCHHHHHHHHHhcCCceEEE
Confidence 6788999999999999986655442 223333222 1 4789999999999973 3333344444444233347899
Q ss_pred eecCCCCChHHHHHHhccchH
Q 007334 272 ISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 272 iSA~~g~gi~eL~~~i~~~l~ 292 (607)
+||++|.|++++++.|.+.+.
T Consensus 153 ~Sa~~~~gi~~l~~~l~~~~~ 173 (177)
T 1wms_A 153 TSAKDATNVAAAFEEAVRRVL 173 (177)
T ss_dssp CCTTTCTTHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999987654
No 104
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.84 E-value=8.2e-21 Score=183.04 Aligned_cols=161 Identities=16% Similarity=0.163 Sum_probs=117.4
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
.++|+|+|.+|||||||+|+|++..... ...+. ++.+.....+.+.+ ..+.+|||||+... ...+
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t--~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~ 74 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDTYTN-DYIST--IGVDFKIKTVELDGKTVKLQIWDTAGQERF----------RTIT 74 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCT-TCCCS--SCCCEEEEEEEETTEEEEEEEECCTTTTTT----------TCCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCc--ccceeEEEEEEECCEEEEEEEEeCCChHHH----------HHHH
Confidence 4689999999999999999999876432 12232 45555555555555 47999999998732 2233
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..++..+|++|+|+|++++.+..+. .+...+... ..+.|+++|+||+|+...+....+.........++ +++++||+
T Consensus 75 ~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 153 (206)
T 2bcg_Y 75 SSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKM-PFLETSAL 153 (206)
T ss_dssp GGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTC-CEEECCTT
T ss_pred HHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCC-eEEEEeCC
Confidence 4567899999999999986655442 233333333 34789999999999987655544555555556676 78999999
Q ss_pred CCCChHHHHHHhccchHHH
Q 007334 276 TGLGMTELYEALRPSVEDY 294 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~~~ 294 (607)
+|.|++++++.|.+.+.+.
T Consensus 154 ~g~gi~~l~~~l~~~i~~~ 172 (206)
T 2bcg_Y 154 DSTNVEDAFLTMARQIKES 172 (206)
T ss_dssp TCTTHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999887654
No 105
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.84 E-value=1.9e-20 Score=178.48 Aligned_cols=157 Identities=16% Similarity=0.171 Sum_probs=100.8
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCC-ceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCccccccc-CcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQED-RVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEK-GPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~-~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~-~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++.. ...+.+.+|+|.+..... . +..+.+|||||+....... ..+.+. ....
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~-~~~~~l~Dt~G~~~~~~~~~~~~~~~-~~~~ 97 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI--I-NDELHFVDVPGYGFAKVSKSEREAWG-RMIE 97 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEE--E-TTTEEEEECCCBCCCSSCHHHHHHHH-HHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEE--E-CCcEEEEECCCCCccccCHHHHHHHH-HHHH
Confidence 45899999999999999999999875 456778888888765433 3 3479999999975442111 011221 1123
Q ss_pred HHHhhc---cEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 401 KNLMRA---HVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 401 ~~i~~a---d~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
.++..+ |++++|+|++++ .....++|+++|+||+|+.+........ .++.+.+....+.
T Consensus 98 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~--------~~~~~~~~~~~~~ 169 (195)
T 1svi_A 98 TYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHA--------KVVRQTLNIDPED 169 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHH--------HHHHHHHTCCTTS
T ss_pred HHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChHHHHHHH--------HHHHHHHcccCCC
Confidence 445555 999999999874 1223579999999999998753322111 1222223334567
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+++++||++|.|++++++.+.+.+
T Consensus 170 ~~~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 170 ELILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ceEEEEccCCCCHHHHHHHHHHHh
Confidence 999999999999999999988754
No 106
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.84 E-value=7e-21 Score=175.95 Aligned_cols=146 Identities=20% Similarity=0.185 Sum_probs=103.7
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeE--EEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRT--VYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.++|+++|.+|||||||+|+|++... ...+.+++.+.....+.+++.. +.||||||..+.. .....
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~----------~~~~~ 70 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTF--IEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFA----------SMRDL 70 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH----------HHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCC--cccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhH----------HHHHH
Confidence 47999999999999999999997643 2344445555555666677654 7899999964331 12345
Q ss_pred HHhhccEEEEEeccchh-----------hHH----hcCCcEEEEEeCccCCCCcCch-HHHHHHHHhcHHHHHhhCCCCC
Q 007334 402 NLMRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNS-ALYKRVKEAVPQEIQTVIPQVT 465 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~-----------~~~----~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 465 (607)
++..+|++++|+|+++. ... ..++|+++|+||+|+.+..... +.... +.+. .
T Consensus 71 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~--------~~~~----~ 138 (167)
T 1kao_A 71 YIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRA--------LAEE----W 138 (167)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHH--------HHHH----H
T ss_pred HhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHH--------HHHH----h
Confidence 67889999999999875 111 1479999999999987543221 11111 1111 1
Q ss_pred CCCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 466 GIPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 466 ~~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
+++++++||++|.|++++++.+.+.+.+
T Consensus 139 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 166 (167)
T 1kao_A 139 GCPFMETSAKSKTMVDELFAEIVRQMNY 166 (167)
T ss_dssp TSCEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEecCCCCcCHHHHHHHHHHHHhh
Confidence 5689999999999999999999887654
No 107
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.83 E-value=2.9e-20 Score=172.96 Aligned_cols=148 Identities=21% Similarity=0.193 Sum_probs=105.6
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
..++|+++|.+|||||||+|+|++.......+ |.......+.+++..+.+|||||+.+... ....+
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~----------~~~~~ 71 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVTTIP----TIGFNVETVTYKNLKFQVWDLGGLTSIRP----------YWRCY 71 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCC----CSSEEEEEEEETTEEEEEEEECCCGGGGG----------GGGGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCcCC----cCccceEEEEECCEEEEEEECCCChhhhH----------HHHHH
Confidence 35899999999999999999999775432222 22334456677899999999999754421 11245
Q ss_pred HhhccEEEEEeccchh-----------hHH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~-----------~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
++.+|++++|+|++++ ... ..++|+++|+||+|+.+.....+ +...+........++
T Consensus 72 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~--------~~~~~~~~~~~~~~~ 143 (171)
T 1upt_A 72 YSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSE--------MANSLGLPALKDRKW 143 (171)
T ss_dssp CTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHH--------HHHHHTGGGCTTSCE
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHH--------HHHHhCchhccCCce
Confidence 6789999999999874 111 14789999999999987533211 122222222333456
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
+++++||++|.|++++|+.+.+.+.
T Consensus 144 ~~~~~Sa~~~~gi~~l~~~l~~~i~ 168 (171)
T 1upt_A 144 QIFKTSATKGTGLDEAMEWLVETLK 168 (171)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEECcCCCCcCHHHHHHHHHHHHh
Confidence 8999999999999999999987654
No 108
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.83 E-value=2.1e-20 Score=172.80 Aligned_cols=146 Identities=18% Similarity=0.193 Sum_probs=102.6
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHh
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLM 404 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~ 404 (607)
++|+++|.+|||||||+|+|++..... ..| |.+.....+.+++..+.||||||+.+.. .....++.
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~~~~~ 66 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT--TIP--TIGFNVETVEYKNISFTVWDVGGQDKIR----------PLWRHYFQ 66 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC--CCC--CSSCCEEEEECSSCEEEEEECCCCGGGH----------HHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc--ccC--cCceeEEEEEECCEEEEEEEcCCChhhH----------HHHHHHhc
Confidence 489999999999999999999765332 233 2233344566788899999999964321 22345778
Q ss_pred hccEEEEEeccchh-----------hHH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCE
Q 007334 405 RAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPV 469 (607)
Q Consensus 405 ~ad~~llViD~~~~-----------~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (607)
.+|++++|+|++++ ... ..+.|+++|+||+|+.+..... . +...+........+.++
T Consensus 67 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~----~----~~~~~~~~~~~~~~~~~ 138 (164)
T 1r8s_A 67 NTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAA----E----ITDKLGLHSLRHRNWYI 138 (164)
T ss_dssp TCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHH----H----HHHHTTGGGCSSCCEEE
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHH----H----HHHHhCcccccCccEEE
Confidence 99999999999875 111 1378999999999997653211 1 11222222222345689
Q ss_pred EEcccCCCCCHHHHHHHHHHHHH
Q 007334 470 VFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 470 v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
+++||++|.|++++|+.+.+.+.
T Consensus 139 ~~~Sa~~~~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 139 QATCATSGDGLYEGLDWLSNQLR 161 (164)
T ss_dssp EECBTTTTBTHHHHHHHHHHHC-
T ss_pred EEcccCCCcCHHHHHHHHHHHHh
Confidence 99999999999999999987653
No 109
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.83 E-value=1.1e-20 Score=181.29 Aligned_cols=160 Identities=15% Similarity=0.101 Sum_probs=113.2
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCe--eEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDL--RFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+++|.+|||||||+|+|++..+ ...... ++.+.....+..++. .+.+|||||+.... ..+
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~~~--~~~~~~--t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~ 85 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTNGY--PTEYIP--TAFDNFSAVVSVDGRPVRLQLCDTAGQDEFD----------KLR 85 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC----------C--CSSEEEEEEEEETTEEEEEEEEECCCSTTCS----------SSG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC--CCCCCC--cccceeEEEEEECCEEEEEEEEECCCCHHHH----------HHh
Confidence 57899999999999999999998763 333333 555555555566664 67799999997332 223
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH--HHHHHHHhhCCCCcEEEEecCCCcccC------------CcCcHHHHHHHHHh
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHN------------GTGSLAGAAAESLM 263 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~D~~~~------------~~~~~~~~~~~~~~ 263 (607)
..++..+|++++|+|++++.+..+. .+...+....++.|+++|+||+|+... +....+........
T Consensus 86 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 165 (201)
T 2q3h_A 86 PLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEE 165 (201)
T ss_dssp GGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHH
T ss_pred HhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHh
Confidence 3467899999999999987665553 244445555568999999999999763 22333444444555
Q ss_pred cCCCCcEEeecCCCCChHHHHHHhccchHH
Q 007334 264 LGFGDPIAISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 264 ~~~~~~i~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
.+..+++++||++|.|++++++.|.+.+.+
T Consensus 166 ~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 195 (201)
T 2q3h_A 166 IKAASYIECSALTQKNLKEVFDAAIVAGIQ 195 (201)
T ss_dssp HTCSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cCCcEEEEEecCCCCCHHHHHHHHHHHHhc
Confidence 565578999999999999999999877654
No 110
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.83 E-value=2.1e-20 Score=181.69 Aligned_cols=160 Identities=11% Similarity=0.061 Sum_probs=102.4
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+++|.+|||||||+|+|++.... ..... ++.+.....+...+ ..+.+|||||+. ++....
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~l~l~Dt~G~~----------~~~~~~ 99 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADGAFP--ESYTP--TVFERYMVNLQVKGKPVHLHIWDTAGQD----------DYDRLR 99 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC---------CC--CCCEEEEEEEEETTEEEEEEEEEC--------------------
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCC--CCCCC--ccceeEEEEEEECCEEEEEEEEECCCch----------hhhHHH
Confidence 368999999999999999999987642 22222 33344344445554 478999999987 444555
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH--HHHHHHHhhCCCCcEEEEecCCCcccCC------------cCcHHHHHHHHHh
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHNG------------TGSLAGAAAESLM 263 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~D~~~~~------------~~~~~~~~~~~~~ 263 (607)
..++..+|++++|+|++++.+..+. .+...+....++.|+++|+||+|+.... ....++.......
T Consensus 100 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 179 (214)
T 2j1l_A 100 PLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARS 179 (214)
T ss_dssp -----CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHH
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHh
Confidence 6678999999999999986555542 2444455545678999999999998642 2223333444555
Q ss_pred cCCCCcEEeecCCCCChHHHHHHhccchHH
Q 007334 264 LGFGDPIAISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 264 ~~~~~~i~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
.+..+++++||++|.|++++++.|.+.+.+
T Consensus 180 ~~~~~~~~~SA~~g~gi~el~~~l~~~~~~ 209 (214)
T 2j1l_A 180 VGAVAYLECSARLHDNVHAVFQEAAEVALS 209 (214)
T ss_dssp TTCSEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 666578999999999999999999876643
No 111
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.83 E-value=2.9e-22 Score=215.93 Aligned_cols=187 Identities=21% Similarity=0.291 Sum_probs=126.8
Q ss_pred CCCCCCccccccccccccCCcccccc-----cccCCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEE
Q 007334 90 EPEPDGVVEDHKVKPLYEKPVDFTKI-----DINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGL 164 (607)
Q Consensus 90 ~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~ 164 (607)
+.+++.+ +.++..+.+++..+... ......+|+|+|+||||||||+|+|++.+.+++.+.++ +|+|.....
T Consensus 191 ~~~~~~~--~~~i~~l~~~l~~~~~~~~~~~~~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~g--tT~d~~~~~ 266 (462)
T 3geh_A 191 PLDDEAI--ISDIENIAAEISQLLATKDKGELLRTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPG--TTRDVVESQ 266 (462)
T ss_dssp CCCTTTH--HHHHHHHHHHHHHHTTTHHHHHHHHHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTT--CCHHHHHHE
T ss_pred hhhHHHH--HHHHHHHHHHHHHHHHHhhhhhhhcCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCC--eeEEEEEEE
Confidence 3344555 55555555555433221 11224579999999999999999999988888888888 999998888
Q ss_pred eeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCC
Q 007334 165 AKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKC 244 (607)
Q Consensus 165 ~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~ 244 (607)
+.+++..+.+|||||+.... +.........+..++..+|++++|+|++++.+..+.++.+.+. ++|+++|+||+
T Consensus 267 i~~~g~~v~liDT~G~~~~~--~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~----~~piivV~NK~ 340 (462)
T 3geh_A 267 LVVGGIPVQVLDTAGIRETS--DQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVK----HRPLILVMNKI 340 (462)
T ss_dssp EEETTEEEEECC----------------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHT----TSCEEEEEECT
T ss_pred EEECCEEEEEEECCccccch--hHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhcc----CCcEEEEEECC
Confidence 88899999999999996321 1111112344566788999999999999998888766655553 46999999999
Q ss_pred CcccCCcCcHHHHHHHHHhc-CCCCcEEeecCCCCChHHHHHHhccchH
Q 007334 245 ESLHNGTGSLAGAAAESLML-GFGDPIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 245 D~~~~~~~~~~~~~~~~~~~-~~~~~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
|+....... ....+ ...+++++||++|.|+++|++.|.+.+.
T Consensus 341 Dl~~~~~~~------~~~~~~~~~~~i~iSAktg~Gi~eL~~~i~~~~~ 383 (462)
T 3geh_A 341 DLVEKQLIT------SLEYPENITQIVHTAAAQKQGIDSLETAILEIVQ 383 (462)
T ss_dssp TSSCGGGST------TCCCCTTCCCEEEEBTTTTBSHHHHHHHHHHHHT
T ss_pred CCCcchhhH------HHHHhccCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 998653321 00011 2236799999999999999999987664
No 112
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.83 E-value=1.1e-20 Score=178.25 Aligned_cols=158 Identities=15% Similarity=0.129 Sum_probs=112.4
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.+|||||||+|+|++.... ..... ++.+.....+...+ ..+.+|||||+.. +.....
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~ 71 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNAFP--GEYIP--TVFDNYSANVMVDGKPVNLGLWDTAGQED----------YDRLRP 71 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCC--SSCCC--CSCCEEEEEEEETTEEEEEEEECCCCSGG----------GTTTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCC--CCcCC--cccceeEEEEEECCEEEEEEEEECCCCHh----------HHHHHH
Confidence 58999999999999999999976542 22222 34344334444444 4577999999973 223334
Q ss_pred HHhhccCEEEEEEecCCCCCHhHH--HHHHHHHhhCCCCcEEEEecCCCcccCC------------cCcHHHHHHHHHhc
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHNG------------TGSLAGAAAESLML 264 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~D~~~~~------------~~~~~~~~~~~~~~ 264 (607)
.++..+|++++|+|++++.+..+. .+...+....++.|+++|+||+|+.... ..............
T Consensus 72 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 151 (186)
T 1mh1_A 72 LSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI 151 (186)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHT
T ss_pred HhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhc
Confidence 567899999999999987665553 2455555555589999999999997641 22333334445556
Q ss_pred CCCCcEEeecCCCCChHHHHHHhccchH
Q 007334 265 GFGDPIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 265 ~~~~~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
+..+++++||++|.|++++++.|.+.+.
T Consensus 152 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 179 (186)
T 1mh1_A 152 GAVKYLECSALTQRGLKTVFDEAIRAVL 179 (186)
T ss_dssp TCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred CCcEEEEecCCCccCHHHHHHHHHHHHh
Confidence 6557899999999999999999987653
No 113
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.83 E-value=3.5e-21 Score=180.60 Aligned_cols=156 Identities=22% Similarity=0.283 Sum_probs=114.8
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
.++|+++|.+|||||||+|+|++.... ....++ +|.+.....+.+++..+.+|||||+..... ....
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~~~~ 74 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHSKVT-EQEAGG--ITQHIGAYQVTVNDKKITFLDTPGHEAFTT----------MRAR 74 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTTCSS-CSSCCS--SSTTCCCCEEEETTEEEEESCCCSSSSSSC----------SCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCccc-cCCCCc--eeEeeeEEEEEeCCceEEEEECCCCHHHHH----------HHHH
Confidence 579999999999999999999987653 222333 566665566677889999999999874322 1234
Q ss_pred HhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCC--------CCcEE
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGF--------GDPIA 271 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~--------~~~i~ 271 (607)
++..+|++++|+|++++......+.+..+... +.|+++|+||+|+.... .......+...+. .++++
T Consensus 75 ~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~--~~p~ilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (178)
T 2lkc_A 75 GAQVTDIVILVVAADDGVMPQTVEAINHAKAA--NVPIIVAINKMDKPEAN---PDRVMQELMEYNLVPEEWGGDTIFCK 149 (178)
T ss_dssp SCCCCCEEEEEEETTCCCCHHHHHHHHHHGGG--SCCEEEEEETTTSSCSC---HHHHHHHHTTTTCCBTTTTSSEEEEE
T ss_pred HHhhCCEEEEEEECCCCCcHHHHHHHHHHHhC--CCCEEEEEECccCCcCC---HHHHHHHHHhcCcChhHcCCcccEEE
Confidence 56789999999999988777776665555544 78999999999997642 1222222222211 15799
Q ss_pred eecCCCCChHHHHHHhccchHH
Q 007334 272 ISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 272 iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
+||++|.|++++++.|.+.+..
T Consensus 150 ~Sa~~~~gv~~l~~~l~~~~~~ 171 (178)
T 2lkc_A 150 LSAKTKEGLDHLLEMILLVSEM 171 (178)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHH
T ss_pred EecCCCCCHHHHHHHHHHhhhh
Confidence 9999999999999999877654
No 114
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.83 E-value=3.4e-20 Score=175.72 Aligned_cols=153 Identities=27% Similarity=0.421 Sum_probs=113.0
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
.++|+++|++|||||||+|+|++.. ..++.++++|.+.....+.+++..+.+|||||+.+.......+ .....++
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~----~~~~~~~ 81 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDE----IIARDYI 81 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTTC-EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHH----HHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHH----HHHHHHH
Confidence 4799999999999999999999764 6678889999999888899999999999999986652111001 1122333
Q ss_pred h--hccEEEEEeccchh--------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcc
Q 007334 404 M--RAHVVALVLDAEEV--------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTS 473 (607)
Q Consensus 404 ~--~ad~~llViD~~~~--------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iS 473 (607)
. .+|++++|+|++.. .....+.|+++|+||+|+..........+.+ .+. .+++++++|
T Consensus 82 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~--------~~~----~~~~~~~~S 149 (188)
T 2wjg_A 82 INEKPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKL--------EKI----LGVKVVPLS 149 (188)
T ss_dssp HHHCCSEEEEEEEGGGHHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHH--------HHH----HTSCEEECB
T ss_pred hccCCCEEEEEecchhHHHHHHHHHHHHhcCCCEEEEEEhhhccccccchHHHHHH--------HHH----hCCCeEEEE
Confidence 3 49999999999875 2234578999999999986432211111111 111 146899999
Q ss_pred cCCCCCHHHHHHHHHHHHHH
Q 007334 474 ALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 474 A~~g~gv~~l~~~i~~~~~~ 493 (607)
|++|.|++++|+.+.+.+.+
T Consensus 150 a~~~~~v~~l~~~i~~~~~~ 169 (188)
T 2wjg_A 150 AAKKMGIEELKKAISIAVKD 169 (188)
T ss_dssp GGGTBSHHHHHHHHHHHHTT
T ss_pred ecCCCCHHHHHHHHHHHHHh
Confidence 99999999999999887654
No 115
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.83 E-value=2e-20 Score=176.74 Aligned_cols=154 Identities=17% Similarity=0.185 Sum_probs=109.0
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
.++|+++|.+|||||||+|+|++.....+....+ .....+.+++..+.+|||||+. .+...+..
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g------~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~ 79 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASEDISHITPTQG------FNIKSVQSQGFKLNVWDIGGQR----------KIRPYWRS 79 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETT------EEEEEEEETTEEEEEEECSSCG----------GGHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCC------eEEEEEEECCEEEEEEECCCCH----------HHHHHHHH
Confidence 5799999999999999999999876544443333 2334455678999999999987 34455667
Q ss_pred HhhccCEEEEEEecCCCCCHhHH--HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHH-----hcCCCCcEE
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESL-----MLGFGDPIA 271 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~-----~~~~~~~i~ 271 (607)
++..+|++++|+|++++.+..+. .+..++... ..+.|+++|+||+|+..... .++...... ..+. ++++
T Consensus 80 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~-~~~~ 156 (181)
T 1fzq_A 80 YFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP--ASEIAEGLNLHTIRDRVW-QIQS 156 (181)
T ss_dssp HHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCE-EEEE
T ss_pred HhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCC--HHHHHHHhCchhccCCce-EEEE
Confidence 88999999999999987655542 122222221 24789999999999986532 122111111 1122 5799
Q ss_pred eecCCCCChHHHHHHhccchH
Q 007334 272 ISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 272 iSA~~g~gi~eL~~~i~~~l~ 292 (607)
+||++|.|+++++++|.+.+.
T Consensus 157 ~Sa~~g~gi~~l~~~l~~~~~ 177 (181)
T 1fzq_A 157 CSALTGEGVQDGMNWVCKNVN 177 (181)
T ss_dssp CCTTTCTTHHHHHHHHHHTC-
T ss_pred ccCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999987664
No 116
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.83 E-value=1.3e-20 Score=189.85 Aligned_cols=158 Identities=22% Similarity=0.300 Sum_probs=115.7
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
.++|+|+|.||||||||+|+|++.. ..+++.|| +|.+...+.+.. +..+.+|||||+....+.. . ....+..
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~-~~v~~~pg--~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~-~---~e~v~~~ 74 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHN-QRVGNWPG--VTVERKSGLVKK-NKDLEIQDLPGIYSMSPYS-P---EAKVARD 74 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCC-CCCCSSSC--CCCSCEEEECTT-CTTEEEEECCCCSCSSCSS-H---HHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC-CcccCCCC--CcEEEEEEEEec-CCeEEEEECCCcCccCCCC-h---HHHHHHH
Confidence 4689999999999999999999875 34777887 888888887776 8899999999998543321 1 1122334
Q ss_pred Hhh--ccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCC
Q 007334 200 VLA--KTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETG 277 (607)
Q Consensus 200 ~~~--~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g 277 (607)
++. .+|++++|+|+++. .....+...+.+. +.|+++|+||+|+........ ........++. +++++||++|
T Consensus 75 ~~~~~~~d~vi~V~D~t~~--e~~~~~~~~l~~~--~~p~ilv~NK~Dl~~~~~~~~-~~~~l~~~lg~-~vi~~SA~~g 148 (272)
T 3b1v_A 75 YLLSQRADSILNVVDATNL--ERNLYLTTQLIET--GIPVTIALNMIDVLDGQGKKI-NVDKLSYHLGV-PVVATSALKQ 148 (272)
T ss_dssp HHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHT--CSCEEEEEECHHHHHHTTCCC-CHHHHHHHHTS-CEEECBTTTT
T ss_pred HHhcCCCCEEEEEecCCch--HhHHHHHHHHHhc--CCCEEEEEEChhhCCcCCcHH-HHHHHHHHcCC-CEEEEEccCC
Confidence 444 69999999999863 2223344455554 789999999999875432221 12223344566 7899999999
Q ss_pred CChHHHHHHhccch
Q 007334 278 LGMTELYEALRPSV 291 (607)
Q Consensus 278 ~gi~eL~~~i~~~l 291 (607)
.|+++|++.|.+.+
T Consensus 149 ~gi~el~~~i~~~~ 162 (272)
T 3b1v_A 149 TGVDQVVKKAAHTT 162 (272)
T ss_dssp BSHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999997654
No 117
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.83 E-value=2.1e-20 Score=179.02 Aligned_cols=150 Identities=16% Similarity=0.108 Sum_probs=107.3
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++.. ......++++.+.....+.+++. .+.+|||||..+.. .....
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~---------~~~~~ 91 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQ-GDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAG---------GWLRD 91 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEE-CCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGG---------HHHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhcc-CCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccch---------hhhHH
Confidence 35899999999999999999998643 22345677788877777778776 55689999964321 11223
Q ss_pred HHHhhccEEEEEeccchh-----------hHHh----cCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEV-----------RAVE----EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVT 465 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~-----------~~~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (607)
.+++.+|++|+|+|+++. .... .++|+++|+||+|+.+..... .+.. .++.+. .
T Consensus 92 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~--~~~~-----~~~a~~----~ 160 (195)
T 3cbq_A 92 HCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVS--LEEG-----RHLAGT----L 160 (195)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSC--HHHH-----HHHHHH----T
T ss_pred HhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcC--HHHH-----HHHHHH----h
Confidence 567789999999999875 1111 378999999999997643221 1111 111111 2
Q ss_pred CCCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 466 GIPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 466 ~~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
+++++++||++|.|++++|+.+.+.+.+
T Consensus 161 ~~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 161 SCKHIETSAALHHNTRELFEGAVRQIRL 188 (195)
T ss_dssp TCEEEEEBTTTTBSHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999887643
No 118
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.83 E-value=6.9e-21 Score=206.01 Aligned_cols=154 Identities=29% Similarity=0.371 Sum_probs=93.9
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
..++|+++|.||||||||+|+|++.+...+++++|||+|.....+.+++..+.||||||+.+.. ...+.+.+..+..+
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~--~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAG--EEIEHEGIRRSRMK 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC----------------------CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcch--hHHHHHHHHHHHhh
Confidence 3589999999999999999999998778899999999999999999999999999999986642 12234444556677
Q ss_pred HhhccEEEEEeccchhh----------H--HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEE
Q 007334 403 LMRAHVVALVLDAEEVR----------A--VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVV 470 (607)
Q Consensus 403 i~~ad~~llViD~~~~~----------~--~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 470 (607)
+..||++|+|+|++++. . ...++|+|+|+||+|+.+..... . +++.+. ...+++
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~~~piIvV~NK~Dl~~~~~~~--~--------~~l~~~----~~~~~i 375 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDRAANADAL--I--------RAIADG----TGTEVI 375 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCTTSEEEEEEECTTSCTTTHHH--H--------HHHHHH----HTSCEE
T ss_pred cccCCEEEEEEECCCCcchhhhHHHHHHHHhcCCCCEEEEEECcCCCCccchh--H--------HHHHhc----CCCceE
Confidence 88999999999998751 1 11378999999999998653211 0 111111 125899
Q ss_pred EcccCCCCCHHHHHHHHHHHHH
Q 007334 471 FTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 471 ~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
++||++|.|++++++.+.+.+.
T Consensus 376 ~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 376 GISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp ECBTTTTBSHHHHHHHHTHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHh
Confidence 9999999999999999988876
No 119
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.83 E-value=5.8e-21 Score=183.77 Aligned_cols=163 Identities=17% Similarity=0.161 Sum_probs=87.3
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC----eeEEEecCCCCccccCchhHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD----LRFKVLDSAGLETEATSGSILDRTAG 195 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~----~~~~liDTpG~~~~~~~~~~~~~~~~ 195 (607)
..+|+|+|.+|||||||+|+|++........... ++..+.....+.+.+ ..+.+|||||+. ++..
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~ 88 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSKGSKFLKDYAM-TSGVEVVVAPVTIPDTTVSVELFLLDTAGSD----------LYKE 88 (208)
T ss_dssp EEEEEEC-----------------------------------CEEEECTTSSEEEEEEEEETTTTH----------HHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCC-ccceEEEEEEEEECCcccEEEEEEEECCCcH----------HHHH
Confidence 4689999999999999999999873222333332 122355556666664 589999999997 5556
Q ss_pred HHHHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhhC----CCCcEEEEecCCCccc-CCcCcHHHHHHHHHhcCCCCc
Q 007334 196 MTANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKHA----PQIKPIVAMNKCESLH-NGTGSLAGAAAESLMLGFGDP 269 (607)
Q Consensus 196 ~~~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~~----~~~p~ilV~NK~D~~~-~~~~~~~~~~~~~~~~~~~~~ 269 (607)
.+..++..+|++++|+|++++.+.... .+...+.... .+.|+++|+||+|+.. .+....+.....+..++. ++
T Consensus 89 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~-~~ 167 (208)
T 2yc2_C 89 QISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTL-DF 167 (208)
T ss_dssp HHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTC-EE
T ss_pred HHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCC-EE
Confidence 677788999999999999986654442 2333333332 4789999999999987 554544555555666776 78
Q ss_pred EEeecCC-CCChHHHHHHhccchHHH
Q 007334 270 IAISAET-GLGMTELYEALRPSVEDY 294 (607)
Q Consensus 270 i~iSA~~-g~gi~eL~~~i~~~l~~~ 294 (607)
+++||++ |.|++++++.|.+.+.+.
T Consensus 168 ~~~Sa~~~~~gi~~l~~~i~~~~~~~ 193 (208)
T 2yc2_C 168 FDVSANPPGKDADAPFLSIATTFYRN 193 (208)
T ss_dssp EECCC-------CHHHHHHHHHHHHH
T ss_pred EEeccCCCCcCHHHHHHHHHHHHHHH
Confidence 9999999 999999999998877654
No 120
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.83 E-value=5e-21 Score=177.01 Aligned_cols=150 Identities=17% Similarity=0.166 Sum_probs=107.3
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHh
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVL 201 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 201 (607)
+|+++|.+|||||||+|+|++.... ... .|.+.....+...+..+.+|||||+. ++...+..++
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~--~~~----~t~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~~~ 65 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIV--TTI----PTIGFNVETVEYKNISFTVWDVGGQD----------KIRPLWRHYF 65 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSS--CCC----CCSSCCEEEEECSSCEEEEEECCCCG----------GGHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcC--ccc----CcCceeEEEEEECCEEEEEEEcCCCh----------hhHHHHHHHh
Confidence 7999999999999999999987642 222 23334455666788999999999997 3445566789
Q ss_pred hccCEEEEEEecCCCCCHhHHHHHHHHHhh-----CCCCcEEEEecCCCcccCCcCcHHHHHHHHHh-----cCCCCcEE
Q 007334 202 AKTQFAIFMIDVRSGLHPLDLEVGKWLRKH-----APQIKPIVAMNKCESLHNGTGSLAGAAAESLM-----LGFGDPIA 271 (607)
Q Consensus 202 ~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~-----~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~-----~~~~~~i~ 271 (607)
..+|++++|+|++++.+... +..|+... ..+.|+++|+||+|+..... .......... .++ ++++
T Consensus 66 ~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~-~~~~ 140 (164)
T 1r8s_A 66 QNTQGLIFVVDSNDRERVNE--AREELMRMLAEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRHRNW-YIQA 140 (164)
T ss_dssp TTCSEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCSSCCE-EEEE
T ss_pred ccCCEEEEEEECCCHHHHHH--HHHHHHHHHhchhhcCCeEEEEEECcCCcCCCC--HHHHHHHhCcccccCccE-EEEE
Confidence 99999999999998755544 22333322 24789999999999976422 1211111111 122 4789
Q ss_pred eecCCCCChHHHHHHhccchH
Q 007334 272 ISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 272 iSA~~g~gi~eL~~~i~~~l~ 292 (607)
+||++|.|++++++.|.+.+.
T Consensus 141 ~Sa~~~~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 141 TCATSGDGLYEGLDWLSNQLR 161 (164)
T ss_dssp CBTTTTBTHHHHHHHHHHHC-
T ss_pred cccCCCcCHHHHHHHHHHHHh
Confidence 999999999999999987654
No 121
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.83 E-value=1.1e-20 Score=177.24 Aligned_cols=156 Identities=21% Similarity=0.266 Sum_probs=112.4
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
..++|+++|.+|||||||+|+|++.. ......+++|.+.....+.+++..+.||||||+.+..... ..+
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~----------~~~ 75 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK-VTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMR----------ARG 75 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC-SSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSC----------CSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc-cccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHH----------HHH
Confidence 35799999999999999999999764 4455667777777666778899999999999976553211 134
Q ss_pred HhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC--CCEE
Q 007334 403 LMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG--IPVV 470 (607)
Q Consensus 403 i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v 470 (607)
+..+|++++|+|++++ .....++|+++|+||+|+.+.. ..+ +...+ .+ ...+....+ .+++
T Consensus 76 ~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~-~~~----~~~~~-~~-~~~~~~~~~~~~~~~ 148 (178)
T 2lkc_A 76 AQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEAN-PDR----VMQEL-ME-YNLVPEEWGGDTIFC 148 (178)
T ss_dssp CCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSC-HHH----HHHHH-TT-TTCCBTTTTSSEEEE
T ss_pred HhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCC-HHH----HHHHH-Hh-cCcChhHcCCcccEE
Confidence 5679999999999873 2224589999999999997642 111 11111 00 011111222 5899
Q ss_pred EcccCCCCCHHHHHHHHHHHHHHHhc
Q 007334 471 FTSALEGRGRIAVMHQVIDTYQKWCL 496 (607)
Q Consensus 471 ~iSA~~g~gv~~l~~~i~~~~~~~~~ 496 (607)
++||++|.|++++|+.+.+.+..+..
T Consensus 149 ~~Sa~~~~gv~~l~~~l~~~~~~~~~ 174 (178)
T 2lkc_A 149 KLSAKTKEGLDHLLEMILLVSEMEEL 174 (178)
T ss_dssp ECCSSSSHHHHHHHHHHHHHHHHTTT
T ss_pred EEecCCCCCHHHHHHHHHHhhhhhcc
Confidence 99999999999999999988776544
No 122
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.83 E-value=4.3e-20 Score=176.51 Aligned_cols=154 Identities=17% Similarity=0.174 Sum_probs=105.8
Q ss_pred cCCceEEEEcCCCCchhHHHHHhhcCCceee--cCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHH
Q 007334 322 KLPLQLAIVGRPNVGKSTLLNALLQEDRVLV--GPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQS 399 (607)
Q Consensus 322 ~~~~~v~ivG~~nvGKSslin~l~~~~~~~~--~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 399 (607)
....+|+++|.+|||||||+|+|++.....+ .++.|. ....+...+..+.||||||+.+.... .
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~----~~~~~~~~~~~~~i~Dt~G~~~~~~~----------~ 80 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGY----NVETFEKGRVAFTVFDMGGAKKFRGL----------W 80 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSE----EEEEEEETTEEEEEEEECCSGGGGGG----------G
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccce----eEEEEEeCCEEEEEEECCCCHhHHHH----------H
Confidence 3457999999999999999999998764443 333343 23345678889999999997554211 1
Q ss_pred HHHHhhccEEEEEeccchh-----------hHHh-----------cCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHH
Q 007334 400 RKNLMRAHVVALVLDAEEV-----------RAVE-----------EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEI 457 (607)
Q Consensus 400 ~~~i~~ad~~llViD~~~~-----------~~~~-----------~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 457 (607)
..+++.+|++|+|+|+++. .... .++|+|+|+||+|+.+.....+..+ .+...
T Consensus 81 ~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~----~~~~~- 155 (199)
T 4bas_A 81 ETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVE----ILDLT- 155 (199)
T ss_dssp GGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHH----HHTHH-
T ss_pred HHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHH----Hhcch-
Confidence 2456789999999999875 1111 1889999999999987643222211 11111
Q ss_pred HhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHHHHHHhc
Q 007334 458 QTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQKWCL 496 (607)
Q Consensus 458 ~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~ 496 (607)
.+....+++++++||++|.|++++|+.|.+.+.+...
T Consensus 156 --~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~ 192 (199)
T 4bas_A 156 --TLMGDHPFVIFASNGLKGTGVHEGFSWLQETASRQSG 192 (199)
T ss_dssp --HHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHHHC-
T ss_pred --hhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHHHhc
Confidence 0112246789999999999999999999988765543
No 123
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.83 E-value=4.3e-20 Score=175.40 Aligned_cols=157 Identities=18% Similarity=0.226 Sum_probs=107.5
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.+|||||||+|+|++.... ..... ++.+.....+...+ ..+.+|||||+. ++...+.
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~~ 87 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNHFV--DEYDP--TIEDSYRKQVVIDGETCLLDILDTAGQE----------EYSAMRD 87 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCC--SCCCT--TCCEEEEEEEEETTEEEEEEEEECCC-------------------
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCc--cccCC--ccceEEEEEEEECCEEEEEEEEECCChH----------HHHHHHH
Confidence 68999999999999999999987542 22233 44444444555555 458999999987 4445566
Q ss_pred HHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
.++..+|++++|+|++++.+..+. .+...+... ..+.|+++|+||+|+... ....+.........++ +++++||+
T Consensus 88 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~ 165 (190)
T 3con_A 88 QYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTR-TVDTKQAHELAKSYGI-PFIETSAK 165 (190)
T ss_dssp --CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCC-CSCHHHHHHHHHHHTC-CEEECCTT
T ss_pred HhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcc-cCCHHHHHHHHHHcCC-eEEEEeCC
Confidence 788999999999999886554442 233333332 237899999999999763 3334444445556676 78999999
Q ss_pred CCCChHHHHHHhccchHH
Q 007334 276 TGLGMTELYEALRPSVED 293 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~~ 293 (607)
+|.|++++++.|.+.+.+
T Consensus 166 ~~~gi~~l~~~l~~~~~~ 183 (190)
T 3con_A 166 TRQGVEDAFYTLVREIRQ 183 (190)
T ss_dssp TCTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999887754
No 124
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.83 E-value=6.8e-21 Score=179.38 Aligned_cols=148 Identities=20% Similarity=0.219 Sum_probs=104.9
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.++|+++|.+|||||||+|+|++.. ....+.+++.+.....+.+++. .+.||||||+.+.... ...
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----------~~~ 73 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQ--FVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIF----------PQT 73 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCC----------CGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC--CCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHH----------HHH
Confidence 5799999999999999999999664 3455566666666666777774 5679999997655211 113
Q ss_pred HHhhccEEEEEeccchh-----------hHH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~-----------~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
+++.+|++++|+|+++. ... ..++|+++|+||+|+.+...... +.. .++.+ ..+
T Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~--~~~-----~~~~~----~~~ 142 (181)
T 3t5g_A 74 YSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISY--EEG-----KALAE----SWN 142 (181)
T ss_dssp GTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCH--HHH-----HHHHH----HTT
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecH--HHH-----HHHHH----HhC
Confidence 55689999999999875 111 23789999999999975433211 111 11111 125
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTYQKW 494 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~~~~ 494 (607)
++++++||++|.|++++|+.+.+.+...
T Consensus 143 ~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 170 (181)
T 3t5g_A 143 AAFLESSAKENQTAVDVFRRIILEAEKM 170 (181)
T ss_dssp CEEEECCTTSHHHHHHHHHHHHHHHHTC
T ss_pred CcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 6899999999999999999998876543
No 125
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.83 E-value=3.6e-20 Score=173.86 Aligned_cols=154 Identities=12% Similarity=0.085 Sum_probs=109.6
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.+|||||||+|+|++..+... .+ ++.+.....+..++ ..+.+|||||++. .
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~~~~~--~~---t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~---------------~ 67 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGSYQVL--EK---TESEQYKKEMLVDGQTHLVLIREEAGAPD---------------A 67 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSCCCCC--SS---CSSSEEEEEEEETTEEEEEEEEECSSSCC---------------H
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCc--CC---CcceeEEEEEEECCEEEEEEEEECCCCch---------------h
Confidence 5899999999999999999998775431 22 22233334444554 5689999999872 2
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHH-HHHHHHhh----CCCCcEEEEecCCCcc--cCCcCcHHHHHHHHHhcCCCCcEE
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKH----APQIKPIVAMNKCESL--HNGTGSLAGAAAESLMLGFGDPIA 271 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~----~~~~p~ilV~NK~D~~--~~~~~~~~~~~~~~~~~~~~~~i~ 271 (607)
.++..+|++++|+|++++.+..+.. +.+|+... .++.|+++|+||+|+. ..+....+.....+...+..++++
T Consensus 68 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~ 147 (178)
T 2iwr_A 68 KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYE 147 (178)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEE
T ss_pred HHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEE
Confidence 4567899999999999876665532 44455543 2478999999999995 233333444444444443227899
Q ss_pred eecCCCCChHHHHHHhccchHHH
Q 007334 272 ISAETGLGMTELYEALRPSVEDY 294 (607)
Q Consensus 272 iSA~~g~gi~eL~~~i~~~l~~~ 294 (607)
+||++|.|++++++.|.+.+...
T Consensus 148 ~Sa~~~~~i~~lf~~l~~~~~~~ 170 (178)
T 2iwr_A 148 TXATYGLNVDRVFQEVAQKVVTL 170 (178)
T ss_dssp EBTTTTBTHHHHHHHHHHHHHHH
T ss_pred EeccccCCHHHHHHHHHHHHHHH
Confidence 99999999999999998877543
No 126
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=8.3e-21 Score=184.14 Aligned_cols=150 Identities=17% Similarity=0.150 Sum_probs=104.0
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeE--EEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRT--VYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..+||+++|.+|||||||+|+|++....++..+++++.+.....+.+++.. +.+|||+|.... .. ....
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~--------~~-~l~~ 106 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGE--------NE-WLHD 106 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHH--------HH-HHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcch--------hh-hHHH
Confidence 358999999999999999999997655455666667777777777788765 568999995321 11 1122
Q ss_pred HHHhhccEEEEEeccchh----------h-HH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEV----------R-AV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVT 465 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~----------~-~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (607)
.+++.+|++|+|||+++. . .. ..++|+|+|+||+||.+.+.... +.. + .+.. ..
T Consensus 107 ~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~--~e~-~----~~a~----~~ 175 (211)
T 2g3y_A 107 HCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSV--SEG-R----ACAV----VF 175 (211)
T ss_dssp CCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCH--HHH-H----HHHH----HH
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeH--HHH-H----HHHH----Hc
Confidence 345679999999999874 0 11 13789999999999975422211 100 0 1111 12
Q ss_pred CCCEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 466 GIPVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 466 ~~~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
+++++++||++|.||+++|+.+.+.+.
T Consensus 176 ~~~~~e~SAk~g~~v~elf~~l~~~i~ 202 (211)
T 2g3y_A 176 DCKFIETSAAVQHNVKELFEGIVRQVR 202 (211)
T ss_dssp TCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 568999999999999999999988764
No 127
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.83 E-value=6.2e-20 Score=174.55 Aligned_cols=158 Identities=22% Similarity=0.275 Sum_probs=109.0
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCccccccc-CcchhHHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEK-GPASLSVMQSRK 401 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~-~~~~~~~~~~~~ 401 (607)
..++|+++|.+|||||||+|+|++.....+.+.+|+|.+..... .+..+.+|||||+....... ..+.+. .....
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~---~~~~~~i~Dt~G~~~~~~~~~~~~~~~-~~~~~ 97 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYL---VNSKYYFVDLPGYGYAKVSKKERMLWK-RLVED 97 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEE---ETTTEEEEECCCBSSSCCCHHHHHHHH-HHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEE---ECCcEEEEECCCCccccCChhhHHHHH-HHHHH
Confidence 35799999999999999999999987677888889888765332 35578899999964431110 011111 11123
Q ss_pred HHhh---ccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 402 NLMR---AHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 402 ~i~~---ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
+++. +|++++|+|++.. .....++|+++|+||+|+.+........+. +.+.+......+
T Consensus 98 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~--------~~~~~~~~~~~~ 169 (195)
T 3pqc_A 98 YFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEE--------HRKVFSKYGEYT 169 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHH--------HHHHHHSSCCSC
T ss_pred HHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCChHHHHHHHHH--------HHHHHhhcCCCc
Confidence 3444 5999999998764 222358999999999999865332222222 222222234579
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
++++||++|.|++++|+.+.+.+.
T Consensus 170 ~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 170 IIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHC
T ss_pred eEEEecCCCCCHHHHHHHHHHHhh
Confidence 999999999999999999987653
No 128
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.83 E-value=9.3e-21 Score=185.32 Aligned_cols=160 Identities=16% Similarity=0.148 Sum_probs=111.6
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+|+|.+|||||||+|+|++........ +. ++.+.....+.+.+ ..+.+|||||+... ...+
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~-~t--~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~ 79 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSK-ST--IGVEFATRTLEIEGKRIKAQIWDTAGQERY----------RAIT 79 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHCCCCC---------CCSEEEEEEEETTEEEEEEEECCTTTTTT----------TCCC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCCCCCCC-Cc--ccceeEEEEEEECCEEEEEEEEECCCccch----------hhhH
Confidence 4689999999999999999999876543322 22 44455555555666 58999999998732 2233
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..++..+|++|+|+|++++.+..+. .+...+... ..+.|+++|+||+|+...+..........+...+. +++++||+
T Consensus 80 ~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~ 158 (223)
T 3cpj_B 80 SAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQL-LFTETSAL 158 (223)
T ss_dssp GGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTC-EEEECCCC
T ss_pred HHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCC-EEEEEeCC
Confidence 4567899999999999987655542 233333333 34789999999999987655544555555555665 78999999
Q ss_pred CCCChHHHHHHhccchHH
Q 007334 276 TGLGMTELYEALRPSVED 293 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~~ 293 (607)
+|.|++++++.|.+.+.+
T Consensus 159 ~~~gi~~l~~~l~~~i~~ 176 (223)
T 3cpj_B 159 NSENVDKAFEELINTIYQ 176 (223)
T ss_dssp -CCCHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999877654
No 129
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.83 E-value=5.2e-20 Score=170.90 Aligned_cols=147 Identities=20% Similarity=0.236 Sum_probs=101.2
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.++|+++|.+|||||||+|+|++.. ......++++.+.....+.+++. .+.||||||..+... ....
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~----------~~~~ 71 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDK-FNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRT----------ITTA 71 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCC-CCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSC----------CCHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC-CCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhh----------hHHH
Confidence 4799999999999999999999764 33445566666666666666664 678999999654321 1235
Q ss_pred HHhhccEEEEEeccchhh----------HH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEVR----------AV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~~----------~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
++..+|++++|+|+++.. .. ..++|+++|+||+|+.+.....+....+ .+. .++
T Consensus 72 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~--------~~~----~~~ 139 (170)
T 1g16_A 72 YYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEAL--------AKE----LGI 139 (170)
T ss_dssp HHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHH--------HHH----HTC
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHH--------HHH----cCC
Confidence 678899999999998751 01 1378999999999995432222211111 111 146
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
+++++||++|.|++++|+.+.+.+.+
T Consensus 140 ~~~~~Sa~~~~gv~~l~~~l~~~~~~ 165 (170)
T 1g16_A 140 PFIESSAKNDDNVNEIFFTLAKLIQE 165 (170)
T ss_dssp CEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 89999999999999999999887654
No 130
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=4.7e-20 Score=174.89 Aligned_cols=146 Identities=18% Similarity=0.219 Sum_probs=102.7
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
.++|+++|.+|||||||+|+|++.....+.++.|.+. ..+.+++..+.||||||+.+... ....++
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~----~~~~~~~~~~~i~Dt~G~~~~~~----------~~~~~~ 81 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNV----EEIVINNTRFLMWDIGGQESLRS----------SWNTYY 81 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSC----EEEEETTEEEEEEECCC----CG----------GGHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccce----EEEEECCEEEEEEECCCCHhHHH----------HHHHHh
Confidence 5899999999999999999999776555555544332 34567889999999999754421 123567
Q ss_pred hhccEEEEEeccchh-----------hHH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 404 MRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 404 ~~ad~~llViD~~~~-----------~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
..+|++|+|+|+++. ... ..++|+++|+||+|+.+.....+ + .+.+........+++
T Consensus 82 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~----i----~~~~~~~~~~~~~~~ 153 (187)
T 1zj6_A 82 TNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAE----I----SQFLKLTSIKDHQWH 153 (187)
T ss_dssp TTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHH----H----HHHHTGGGCCSSCEE
T ss_pred cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHH----H----HHHhChhhhcCCCcE
Confidence 889999999999875 111 25789999999999976432111 1 111211111234568
Q ss_pred EEEcccCCCCCHHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
++++||++|.|++++++.+.+.+
T Consensus 154 ~~~~Sa~~g~gi~~l~~~l~~~~ 176 (187)
T 1zj6_A 154 IQACCALTGEGLCQGLEWMMSRL 176 (187)
T ss_dssp EEECBTTTTBTHHHHHHHHHHHH
T ss_pred EEEccCCCCcCHHHHHHHHHHHH
Confidence 99999999999999999988765
No 131
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.83 E-value=1e-20 Score=184.00 Aligned_cols=160 Identities=11% Similarity=0.060 Sum_probs=117.4
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee--CCeeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL--GDLRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+|+|.+|||||||+|+|++..+. ..... ++.+.....+.. ....+.+|||||+.. +...+
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~ 92 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKDCYP--ETYVP--TVFENYTACLETEEQRVELSLWDTSGSPY----------YDNVR 92 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSCCC--SSCCC--CSEEEEEEEEEC--CEEEEEEEEECCSGG----------GTTTG
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCC--CCcCC--eeeeeEEEEEEECCEEEEEEEEECCCCHh----------HHHHH
Confidence 478999999999999999999987652 22222 222222233333 346799999999872 33344
Q ss_pred HHHhhccCEEEEEEecCCCCCHhH--HHHHHHHHhhCCCCcEEEEecCCCcccC------------CcCcHHHHHHHHHh
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLD--LEVGKWLRKHAPQIKPIVAMNKCESLHN------------GTGSLAGAAAESLM 263 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~--~~~~~~l~~~~~~~p~ilV~NK~D~~~~------------~~~~~~~~~~~~~~ 263 (607)
..++..+|++|+|+|++++.+..+ ..+...+....++.|+++|+||+|+..+ +....+.....+..
T Consensus 93 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 172 (214)
T 3q3j_B 93 PLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQ 172 (214)
T ss_dssp GGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHH
T ss_pred HHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHH
Confidence 557889999999999998766665 2355556555668999999999999763 33445555566667
Q ss_pred cCCCCcEEeecCCCCC-hHHHHHHhccchHH
Q 007334 264 LGFGDPIAISAETGLG-MTELYEALRPSVED 293 (607)
Q Consensus 264 ~~~~~~i~iSA~~g~g-i~eL~~~i~~~l~~ 293 (607)
.++..++++||++|.| ++++++.|.+.+..
T Consensus 173 ~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~ 203 (214)
T 3q3j_B 173 LGAEIYLEGSAFTSEKSIHSIFRTASMLCLN 203 (214)
T ss_dssp HTCSEEEECCTTTCHHHHHHHHHHHHHHHHC
T ss_pred cCCCEEEEeccCCCcccHHHHHHHHHHHHhc
Confidence 7766789999999998 99999999876643
No 132
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.83 E-value=1.8e-20 Score=176.13 Aligned_cols=161 Identities=17% Similarity=0.204 Sum_probs=105.2
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC---CeeEEEecCCCCccccCchhHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG---DLRFKVLDSAGLETEATSGSILDRTAGM 196 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~ 196 (607)
.++|+++|.+|||||||+|+|++..... ...+. ++.+.....+.+. ...+.+|||||+. ++...
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~ 74 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVNDKYSQ-QYKAT--IGADFLTKEVTVDGDKVATMQVWDTAGQE----------RFQSL 74 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCT-TC-----CCCSCEEEEECCSSSCCEEEEEECCC------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCcCCc-ccCCc--cceEEEEEEEEEcCCcEEEEEEEECCCCh----------Hhhhh
Confidence 4789999999999999999999876431 11222 4445555555544 3579999999977 34455
Q ss_pred HHHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-----CCCCcEEEEecCCCcccCC-cCcHHHHHHHHHhcCCCCc
Q 007334 197 TANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-----APQIKPIVAMNKCESLHNG-TGSLAGAAAESLMLGFGDP 269 (607)
Q Consensus 197 ~~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-----~~~~p~ilV~NK~D~~~~~-~~~~~~~~~~~~~~~~~~~ 269 (607)
+..++..+|++++|+|++++.+..+. .+...+... ..+.|+++|+||+|+.... ..............+..++
T Consensus 75 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~ 154 (182)
T 1ky3_A 75 GVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPL 154 (182)
T ss_dssp --CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCE
T ss_pred hHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeE
Confidence 56678999999999999986554442 222222221 1478999999999996432 2233333333332333478
Q ss_pred EEeecCCCCChHHHHHHhccchHH
Q 007334 270 IAISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 270 i~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
+++||++|.|++++++.|.+.+.+
T Consensus 155 ~~~Sa~~~~gi~~l~~~l~~~~~~ 178 (182)
T 1ky3_A 155 FLTSAKNAINVDTAFEEIARSALQ 178 (182)
T ss_dssp EEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999876643
No 133
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=1.5e-20 Score=180.92 Aligned_cols=148 Identities=20% Similarity=0.183 Sum_probs=107.1
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++.. ......++++.+.....+.+++. .+.||||||..+.. ....
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~----------~~~~ 93 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGL-FPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFR----------SITQ 93 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSS-CCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGH----------HHHG
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCC-CCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHH----------HHHH
Confidence 35899999999999999999999764 33445556667777677777775 67899999964331 1234
Q ss_pred HHHhhccEEEEEeccchhh-----------H---HhcCCcEEEEEeCccCCCCcCch-HHHHHHHHhcHHHHHhhCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEVR-----------A---VEEGRGLVVIVNKMDLLSGRQNS-ALYKRVKEAVPQEIQTVIPQVT 465 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~-----------~---~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 465 (607)
.+++.+|++|+|+|+++.. . ...++|+++|+||+|+.+..... +.... +.+ ..
T Consensus 94 ~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~--------~~~----~~ 161 (201)
T 2ew1_A 94 SYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEE--------FSE----AQ 161 (201)
T ss_dssp GGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHH--------HHH----HH
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHH--------HHH----Hc
Confidence 5677899999999998751 0 12478999999999997543221 11111 111 12
Q ss_pred CCCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 466 GIPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 466 ~~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
+++++++||++|.|++++|+.+.+.+.+
T Consensus 162 ~~~~~~~Sa~~g~gv~~l~~~l~~~i~~ 189 (201)
T 2ew1_A 162 DMYYLETSAKESDNVEKLFLDLACRLIS 189 (201)
T ss_dssp TCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 5689999999999999999999887654
No 134
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.83 E-value=3.1e-20 Score=177.17 Aligned_cols=149 Identities=21% Similarity=0.275 Sum_probs=103.1
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++... .....++++.+.....+.+++. .+.||||||..+.. ....
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~----------~~~~ 93 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDTF-CEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFN----------SITS 93 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC---------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGH----------HHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCC-CcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHH----------HHHH
Confidence 358999999999999999999997643 2334455556666666777764 67899999964331 2245
Q ss_pred HHHhhccEEEEEeccchhh----------HH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEVR----------AV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~----------~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
.+++.+|++|+|+|+++.. .. ..++|+++|+||+|+.+...... +.. .++.+ ...+
T Consensus 94 ~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~--~~~-----~~~~~---~~~~ 163 (192)
T 2il1_A 94 AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITR--QQG-----EKFAQ---QITG 163 (192)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCH--HHH-----HHHHH---TSTT
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCH--HHH-----HHHHH---hcCC
Confidence 6778999999999998761 11 13789999999999975432211 111 11111 1236
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
.+++++||++|.|++++|+.|.+.+.
T Consensus 164 ~~~~~~SA~~g~gi~~l~~~l~~~i~ 189 (192)
T 2il1_A 164 MRFCEASAKDNFNVDEIFLKLVDDIL 189 (192)
T ss_dssp CEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999987654
No 135
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.83 E-value=2.3e-20 Score=172.62 Aligned_cols=146 Identities=23% Similarity=0.224 Sum_probs=103.1
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.++|+++|.+|||||||+|+|++.. ....+.+++.+.....+.+++. .+.||||||..+.. .....
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~----------~~~~~ 71 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDE--FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA----------AIRDN 71 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CH----------HHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCc--cCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhH----------HHHHH
Confidence 4799999999999999999999864 3445556666666666667665 67899999964331 22345
Q ss_pred HHhhccEEEEEeccchhh-----------H--Hh--cCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEVR-----------A--VE--EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~~-----------~--~~--~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
++..+|++++|+|+++.. . .. .++|+++|+||+|+.+..... .+...+ +.+. .+
T Consensus 72 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~-----~~~~----~~ 140 (168)
T 1u8z_A 72 YFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVS--VEEAKN-----RADQ----WN 140 (168)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSC--HHHHHH-----HHHH----HT
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccC--HHHHHH-----HHHH----cC
Confidence 678899999999998751 1 11 378999999999997543211 111111 1111 14
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
++++++||++|.|++++|+.+.+.+.
T Consensus 141 ~~~~~~Sa~~~~gi~~l~~~l~~~i~ 166 (168)
T 1u8z_A 141 VNYVETSAKTRANVDKVFFDLMREIR 166 (168)
T ss_dssp CEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999987653
No 136
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.83 E-value=2.4e-20 Score=178.21 Aligned_cols=162 Identities=19% Similarity=0.178 Sum_probs=110.8
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCe--eEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDL--RFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+|||++|||||||+|+|++....++...+. ++.+.....+.+++. .+.+|||+|.... .....
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~---------~~~~~ 74 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEV--LGEDTYERTLMVDGESATIILLDMWENKGE---------NEWLH 74 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC----GG--GCTTEEEEEEEETTEEEEEEEECCCCC-------------CTTG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCccccc--cceeEEEEEEEECCeEEEEEEEEeccCcch---------hhhHH
Confidence 3689999999999999999999765444443333 445554555556664 5678999998631 11122
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeec
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISA 274 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA 274 (607)
..++..+|++++|+|+++..+.... .+...+.+. ..+.|+++|+||+|+...+..............+. +++++||
T Consensus 75 ~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~-~~~e~SA 153 (192)
T 2cjw_A 75 DHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDX-KFIETSA 153 (192)
T ss_dssp GGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-EEEECBT
T ss_pred HhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCC-ceEEecc
Confidence 3456789999999999986665542 233444443 24789999999999986555444443334444555 7899999
Q ss_pred CCCCChHHHHHHhccchHH
Q 007334 275 ETGLGMTELYEALRPSVED 293 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~~l~~ 293 (607)
++|.|++++++.|.+.+..
T Consensus 154 ~~g~~v~~lf~~l~~~~~~ 172 (192)
T 2cjw_A 154 AVQHNVKELFEGIVRQVRL 172 (192)
T ss_dssp TTTBSHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHh
Confidence 9999999999999887643
No 137
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.83 E-value=2.4e-20 Score=176.22 Aligned_cols=149 Identities=18% Similarity=0.174 Sum_probs=107.4
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++.. ......++++.+.....+.+++ ..+.||||||+.+.. ....
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~~ 77 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKK-FKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFR----------SVTR 77 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSS-CCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGH----------HHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCC-CCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHH----------HHHH
Confidence 35899999999999999999999764 3334456666676666777777 478899999964331 2234
Q ss_pred HHHhhccEEEEEeccchhh--------------HHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEVR--------------AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~--------------~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
.++..+|++|+|+|+++.. ....++|+++|+||+|+.+...... .... .+.. ..+
T Consensus 78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~-----~~~~----~~~ 146 (186)
T 2bme_A 78 SYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTF--LEAS-----RFAQ----ENE 146 (186)
T ss_dssp TTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCH--HHHH-----HHHH----HTT
T ss_pred HHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCH--HHHH-----HHHH----HcC
Confidence 5678899999999998751 0125789999999999965322211 1110 1111 135
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
++++++||++|.|++++|+.+.+.+.+
T Consensus 147 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 173 (186)
T 2bme_A 147 LMFLETSALTGENVEEAFVQCARKILN 173 (186)
T ss_dssp CEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999999877643
No 138
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.83 E-value=2e-20 Score=178.85 Aligned_cols=160 Identities=18% Similarity=0.195 Sum_probs=110.0
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
..++|+|+|.+|||||||+|+|++.....+...+ |.......+...+..+.+|||||+. ++...+.
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~----t~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~ 81 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITA----TVGYNVETFEKGRVAFTVFDMGGAK----------KFRGLWE 81 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC----CCCC----CSSEEEEEEEETTEEEEEEEECCSG----------GGGGGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCccccccc----ccceeEEEEEeCCEEEEEEECCCCH----------hHHHHHH
Confidence 3579999999999999999999998765432122 2234445566788999999999997 2333445
Q ss_pred HHhhccCEEEEEEecCCCCCHhHH--HHHHHHHhh--C------CCCcEEEEecCCCcccCCcCcH-HHHH--HHH-Hhc
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKH--A------PQIKPIVAMNKCESLHNGTGSL-AGAA--AES-LML 264 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~--~------~~~p~ilV~NK~D~~~~~~~~~-~~~~--~~~-~~~ 264 (607)
.++..+|++|+|+|++++.+.... .+..++... . .+.|+++|+||+|+........ .... ..+ ...
T Consensus 82 ~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 161 (199)
T 4bas_A 82 TYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDH 161 (199)
T ss_dssp GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTS
T ss_pred HHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCC
Confidence 678899999999999987665542 222332221 0 2789999999999987532111 1111 111 223
Q ss_pred CCCCcEEeecCCCCChHHHHHHhccchHH
Q 007334 265 GFGDPIAISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 265 ~~~~~i~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
++ .++++||++|.|++++++.|.+.+.+
T Consensus 162 ~~-~~~~~Sa~~g~gv~~l~~~l~~~~~~ 189 (199)
T 4bas_A 162 PF-VIFASNGLKGTGVHEGFSWLQETASR 189 (199)
T ss_dssp CE-EEEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred ee-EEEEeeCCCccCHHHHHHHHHHHHHH
Confidence 33 67999999999999999999987765
No 139
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.83 E-value=2.9e-20 Score=178.84 Aligned_cols=149 Identities=19% Similarity=0.158 Sum_probs=102.0
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++.. ......++++.+.....+.+++ ..+.||||||..+.. ....
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----------~~~~ 96 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGA-FSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFR----------TITQ 96 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSC-C----------CEEEEEEEETTEEEEEEEECCTTCGGGH----------HHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCC-CCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHH----------HHHH
Confidence 45899999999999999999999764 2223344445566666777777 478899999964331 2245
Q ss_pred HHHhhccEEEEEeccchhh-----------HH---hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEVR-----------AV---EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~-----------~~---~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
.+++.+|++|+|+|+++.. .. ..++|+++|+||+|+.+..... .+... ++.+. .+
T Consensus 97 ~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~--~~~~~-----~~~~~----~~ 165 (201)
T 2hup_A 97 SYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVS--LAEAQ-----SLAEH----YD 165 (201)
T ss_dssp HHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC--HHHHH-----HHHHH----TT
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccC--HHHHH-----HHHHH----cC
Confidence 6788999999999998751 11 1468999999999997532211 11111 11111 24
Q ss_pred C-CEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 467 I-PVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 467 ~-~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
+ +++++||++|.|++++|+.|.+.+.+
T Consensus 166 ~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 193 (201)
T 2hup_A 166 ILCAIETSAKDSSNVEEAFLRVATELIM 193 (201)
T ss_dssp CSEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 5 89999999999999999999887654
No 140
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.83 E-value=2.8e-20 Score=172.81 Aligned_cols=148 Identities=16% Similarity=0.136 Sum_probs=96.6
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
++|+++|.+|||||||+|+|++..... ...+.++.+.....+.+++. .+.+|||||..+... .....+
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---------~~~~~~ 72 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDH-AHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGG---------WLQDHC 72 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC-------------CEEEEEEEETTEEEEEEEECCCCC-----------------CHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcc-cccCCCcCCeeeEEEEECCeEEEEEEEECCCccccch---------hhhhhh
Confidence 689999999999999999999754332 33344566777777777775 566999999754321 112235
Q ss_pred HhhccEEEEEeccchh-----------hHHh----cCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV-----------RAVE----EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~-----------~~~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
++.+|++++|+|+++. .... .++|+++|+||+|+.+...... +.. ..+.+ ..++
T Consensus 73 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~--~~~-----~~~~~----~~~~ 141 (169)
T 3q85_A 73 LQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSL--EEG-----RHLAG----TLSC 141 (169)
T ss_dssp HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCH--HHH-----HHHHH----HTTC
T ss_pred hccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCH--HHH-----HHHHH----HcCC
Confidence 6679999999999875 1111 2789999999999975432211 111 11111 1256
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
+++++||++|.|++++|+.+.+.+..
T Consensus 142 ~~~~~Sa~~~~~v~~l~~~l~~~i~~ 167 (169)
T 3q85_A 142 KHIETSAALHHNTRELFEGAVRQIRL 167 (169)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred cEEEecCccCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999887643
No 141
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=1.7e-20 Score=181.12 Aligned_cols=158 Identities=15% Similarity=0.151 Sum_probs=110.3
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
++|+++|.+|||||||+|+|++...... ... ++.+.....+...+ ..+.+|||||+... ...+.
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~ 91 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDEFPEV--YVP--TVFENYVADIEVDGKQVELALWDTAGQEDY----------DRLRP 91 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSCC-----------CCEEEEEEEETTEEEEEEEEECTTCTTC----------TTTGG
T ss_pred cEEEEECcCCCCHHHHHHHHhcCCCCCc--CCC--cccceEEEEEEECCEEEEEEEEECCCcHHH----------HHHHH
Confidence 5899999999999999999998765322 111 33333333344555 57899999998732 22334
Q ss_pred HHhhccCEEEEEEecCCCCCHhHH--HHHHHHHhhCCCCcEEEEecCCCcccC------------CcCcHHHHHHHHHhc
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHN------------GTGSLAGAAAESLML 264 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~D~~~~------------~~~~~~~~~~~~~~~ 264 (607)
.++..+|++++|+|++++.+.... .+...+....++.|+++|+||+|+... +....+.........
T Consensus 92 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 171 (207)
T 2fv8_A 92 LSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRI 171 (207)
T ss_dssp GGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHT
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhc
Confidence 567899999999999886554442 355556555568999999999999764 122233334444455
Q ss_pred CCCCcEEeecCCCCChHHHHHHhccchH
Q 007334 265 GFGDPIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 265 ~~~~~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
+..+++++||++|.|++++++.|.+.+.
T Consensus 172 ~~~~~~~~SA~~g~gi~el~~~l~~~i~ 199 (207)
T 2fv8_A 172 QAYDYLECSAKTKEGVREVFETATRAAL 199 (207)
T ss_dssp TCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCCEEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 6557899999999999999999987653
No 142
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.82 E-value=6.3e-21 Score=183.29 Aligned_cols=157 Identities=12% Similarity=0.131 Sum_probs=113.0
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee--CCeeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL--GDLRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
.++|+|+|.+|||||||+|+|++..... .... ++.+........ .+..+.+|||||+.... ..+
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~ 89 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGEFSE--GYDP--TVENTYSKIVTLGKDEFHLHLVDTAGQDEYS----------ILP 89 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCS--CCCC--CSEEEEEEEEC----CEEEEEEEECCCCTTC----------CCC
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCCCCC--CCCC--ccceEEEEEEEECCEEEEEEEEECCCccchH----------HHH
Confidence 4789999999999999999999876542 2222 333332333333 45678999999987322 233
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhh-----CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEe
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH-----APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAI 272 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~-----~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~i 272 (607)
..++..+|++++|+|++++.+... +..|+... ..+.|+++|+||+|+...+..............+. +++++
T Consensus 90 ~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~ 166 (201)
T 3oes_A 90 YSFIIGVHGYVLVYSVTSLHSFQV--IESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGA-TFMES 166 (201)
T ss_dssp GGGTTTCCEEEEEEETTCHHHHHH--HHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEEEC
T ss_pred HHHHhcCCEEEEEEeCCCHHHHHH--HHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCC-eEEEE
Confidence 456789999999999997655444 33444332 23689999999999987666555555556666676 78999
Q ss_pred ecCCCCChHHHHHHhccchHH
Q 007334 273 SAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 273 SA~~g~gi~eL~~~i~~~l~~ 293 (607)
||++|.|++++++.|.+.+.+
T Consensus 167 Sa~~~~~v~~l~~~l~~~i~~ 187 (201)
T 3oes_A 167 SARENQLTQGIFTKVIQEIAR 187 (201)
T ss_dssp CTTCHHHHHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999887754
No 143
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.82 E-value=9.5e-21 Score=176.26 Aligned_cols=154 Identities=19% Similarity=0.164 Sum_probs=109.5
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
.++|+++|.+|||||||+|+|++.... ... .|.+.....+.+.+..+.+|||||+.. +...+..
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~----~t~~~~~~~~~~~~~~~~~~Dt~G~~~----------~~~~~~~ 70 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGEVV--TTI----PTIGFNVETVTYKNLKFQVWDLGGLTS----------IRPYWRC 70 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSSCC--CCC----CCSSEEEEEEEETTEEEEEEEECCCGG----------GGGGGGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCC--CcC----CcCccceEEEEECCEEEEEEECCCChh----------hhHHHHH
Confidence 468999999999999999999987642 212 233445566677889999999999872 2233456
Q ss_pred HhhccCEEEEEEecCCCCCHhHH--HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHH-----HhcCCCCcEE
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAES-----LMLGFGDPIA 271 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~-----~~~~~~~~i~ 271 (607)
++..+|++++|+|++++.+.... .+...+... ..+.|+++|+||+|+..... ..+..... ...++ ++++
T Consensus 71 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~-~~~~ 147 (171)
T 1upt_A 71 YYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT--SSEMANSLGLPALKDRKW-QIFK 147 (171)
T ss_dssp GCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCTTSCE-EEEE
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCC--HHHHHHHhCchhccCCce-EEEE
Confidence 77899999999999988766542 222333221 24789999999999976532 11111111 11223 5799
Q ss_pred eecCCCCChHHHHHHhccchH
Q 007334 272 ISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 272 iSA~~g~gi~eL~~~i~~~l~ 292 (607)
+||++|.|++++++.|.+.+.
T Consensus 148 ~Sa~~~~gi~~l~~~l~~~i~ 168 (171)
T 1upt_A 148 TSATKGTGLDEAMEWLVETLK 168 (171)
T ss_dssp CCTTTCTTHHHHHHHHHHHHH
T ss_pred CcCCCCcCHHHHHHHHHHHHh
Confidence 999999999999999987664
No 144
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=3.4e-20 Score=175.88 Aligned_cols=155 Identities=18% Similarity=0.121 Sum_probs=107.0
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
...+|+++|.+|||||||+|+|++........ |.+.....+.+++..+.+|||||+. ++...+.
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~------t~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~ 78 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSP------TIGSNVEEIVINNTRFLMWDIGGQE----------SLRSSWN 78 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCEEEEC------CSCSSCEEEEETTEEEEEEECCC--------------CGGGH
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCcCcC------CCccceEEEEECCEEEEEEECCCCH----------hHHHHHH
Confidence 35789999999999999999999776543322 2223334555678999999999997 3333445
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHH-HH-HHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHH-----hcCCCCcE
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLE-VG-KWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESL-----MLGFGDPI 270 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~-~~-~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~-----~~~~~~~i 270 (607)
.++..+|++++|+|++++.+..... +. ..+... ..+.|+++|+||+|+..... .++...... ..++ +++
T Consensus 79 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~-~~~ 155 (187)
T 1zj6_A 79 TYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT--VAEISQFLKLTSIKDHQW-HIQ 155 (187)
T ss_dssp HHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCCSSCE-EEE
T ss_pred HHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCC--HHHHHHHhChhhhcCCCc-EEE
Confidence 6789999999999999987666522 22 222211 24789999999999976322 222222221 1222 679
Q ss_pred EeecCCCCChHHHHHHhccchH
Q 007334 271 AISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 271 ~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
++||++|.|+++++++|.+.+.
T Consensus 156 ~~Sa~~g~gi~~l~~~l~~~~~ 177 (187)
T 1zj6_A 156 ACCALTGEGLCQGLEWMMSRLK 177 (187)
T ss_dssp ECBTTTTBTHHHHHHHHHHHHC
T ss_pred EccCCCCcCHHHHHHHHHHHHH
Confidence 9999999999999999987664
No 145
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.82 E-value=7e-20 Score=172.80 Aligned_cols=149 Identities=22% Similarity=0.213 Sum_probs=107.6
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++.. ....+++++.+.....+.+++. .+.||||||+.+.. ....
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~~ 84 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDE--FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA----------AIRD 84 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC--CCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH----------HHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCC--CCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccH----------HHHH
Confidence 35899999999999999999999764 3445666666666666677765 67899999964431 2234
Q ss_pred HHHhhccEEEEEeccchhh-------------HHh--cCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEVR-------------AVE--EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVT 465 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~-------------~~~--~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (607)
.++..+|++++|+|+++.. ... .++|+++|+||+|+.+..... .+... ++.+ ..
T Consensus 85 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~-----~~~~----~~ 153 (187)
T 2a9k_A 85 NYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVS--VEEAK-----NRAE----QW 153 (187)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSC--HHHHH-----HHHH----HT
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccC--HHHHH-----HHHH----Hc
Confidence 5778899999999998751 111 278999999999997543211 11111 1111 12
Q ss_pred CCCEEEcccCCCCCHHHHHHHHHHHHHHH
Q 007334 466 GIPVVFTSALEGRGRIAVMHQVIDTYQKW 494 (607)
Q Consensus 466 ~~~~v~iSA~~g~gv~~l~~~i~~~~~~~ 494 (607)
+++++++||++|.|++++|+.|.+.+.+.
T Consensus 154 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 182 (187)
T 2a9k_A 154 NVNYVETSAKTRANVDKVFFDLMREIRAR 182 (187)
T ss_dssp TCEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHh
Confidence 56899999999999999999998876543
No 146
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.82 E-value=2.3e-20 Score=179.47 Aligned_cols=158 Identities=16% Similarity=0.179 Sum_probs=111.6
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+++|.+|||||||+|+|++....... .+. ++.+.. ..+..++ ..+.+|||||+.. +....
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-~~t--~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~ 90 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQFPEVY-VPT--VFENYI-ADIEVDGKQVELALWDTAGQED----------YDRLR 90 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSSC-CCS--SCCCCE-EEEEETTEEEEEEEECCCCSGG----------GTTTG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCCccc-CCc--ccceEE-EEEEECCEEEEEEEEECCCchh----------HHHHH
Confidence 358999999999999999999987653211 121 222222 2344444 4789999999872 22333
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH--HHHHHHHhhCCCCcEEEEecCCCcccC------------CcCcHHHHHHHHHh
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHN------------GTGSLAGAAAESLM 263 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~D~~~~------------~~~~~~~~~~~~~~ 263 (607)
..++..+|++++|+|++++.+..+. .+...+....++.|+++|+||+|+... +....++....+..
T Consensus 91 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 170 (201)
T 2gco_A 91 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANR 170 (201)
T ss_dssp GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHH
T ss_pred HHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHh
Confidence 4568899999999999986555543 355555555568999999999999864 22333344444555
Q ss_pred cCCCCcEEeecCCCCChHHHHHHhccch
Q 007334 264 LGFGDPIAISAETGLGMTELYEALRPSV 291 (607)
Q Consensus 264 ~~~~~~i~iSA~~g~gi~eL~~~i~~~l 291 (607)
.+...++++||++|.|++++++.|.+.+
T Consensus 171 ~~~~~~~~~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 171 ISAFGYLECSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp TTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 6665689999999999999999987654
No 147
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.82 E-value=1.4e-19 Score=174.96 Aligned_cols=148 Identities=20% Similarity=0.223 Sum_probs=107.5
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++.. ......++++.+.....+.+++ ..+.||||||+.+... ...
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~~~ 87 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDK-FNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRT----------ITT 87 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCC-CCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTC----------CCH
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC-CCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHH----------HHH
Confidence 35899999999999999999999764 4445566777777777778887 5788999999654421 123
Q ss_pred HHHhhccEEEEEeccchhh----------HH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEVR----------AV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~----------~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
.++..+|++|+|+|+++.. .. ..++|+++|+||+|+.......+....+ ... .+
T Consensus 88 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~--------~~~----~~ 155 (213)
T 3cph_A 88 AYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEAL--------AKE----LG 155 (213)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHH--------HHH----HT
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHH--------HHH----cC
Confidence 5678899999999998751 11 1378999999999995332221111111 111 14
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
++++++||++|.|++++|+.|.+.+.+
T Consensus 156 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 182 (213)
T 3cph_A 156 IPFIESSAKNDDNVNEIFFTLAKLIQE 182 (213)
T ss_dssp CCEEECBTTTTBSSHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999998876543
No 148
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.82 E-value=1e-20 Score=180.69 Aligned_cols=152 Identities=16% Similarity=0.163 Sum_probs=105.3
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
..+|+++|.+|||||||+|+|++...... . .|.+.....+...+..+.+|||||++ ++...+..
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~~~~~~--~----~t~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~ 92 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLGEIVTT--I----PTIGFNVETVEYKNICFTVWDVGGQD----------KIRPLWRH 92 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSSCCEEE--E----EETTEEEEEEEETTEEEEEEECC---------------CTTHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHhCCcccc--C----CcCceeEEEEEECCEEEEEEECCCCH----------hHHHHHHH
Confidence 47899999999999999999998765321 1 34445556677788999999999997 33344556
Q ss_pred HhhccCEEEEEEecCCCCCHhHHHHHHHHHhh-----CCCCcEEEEecCCCcccCCcCcHHHHHHHHHh-----cCCCCc
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH-----APQIKPIVAMNKCESLHNGTGSLAGAAAESLM-----LGFGDP 269 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~-----~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~-----~~~~~~ 269 (607)
++..+|++++|+|++++.+... +..|+... ..+.|+++|+||+|+..... ..+....... .++ ++
T Consensus 93 ~~~~~d~iilv~D~~~~~s~~~--~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~-~~ 167 (192)
T 2b6h_A 93 YFQNTQGLIFVVDSNDRERVQE--SADELQKMLQEDELRDAVLLVFANKQDMPNAMP--VSELTDKLGLQHLRSRTW-YV 167 (192)
T ss_dssp HHHTCCEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCSSCCE-EE
T ss_pred HhccCCEEEEEEECCCHHHHHH--HHHHHHHHhcccccCCCeEEEEEECCCCCCCCC--HHHHHHHhCcccccCCce-EE
Confidence 7899999999999998765554 22333322 24789999999999976422 1221111111 112 47
Q ss_pred EEeecCCCCChHHHHHHhccchH
Q 007334 270 IAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 270 i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
+++||++|.|++++++.|.+.+.
T Consensus 168 ~~~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 168 QATCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp EECBTTTTBTHHHHHHHHHHHTT
T ss_pred EECcCCCcCCHHHHHHHHHHHHh
Confidence 99999999999999999987653
No 149
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.82 E-value=4.6e-21 Score=180.44 Aligned_cols=158 Identities=13% Similarity=0.103 Sum_probs=104.3
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC--CeeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG--DLRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+++|.+|||||||+|+|++.... ..... ++.+.....+... ...+.+|||||+.. +...+
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~ 73 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNTFP--TDYVP--TVFDNFSANVVVNGATVNLGLWDTAGQED----------YNRLR 73 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSCCC--------------CBCCCC-------CEEECCCC-CT----------TTTTG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCC--eeeeeEEEEEEECCEEEEEEEEECCCChh----------hhhhH
Confidence 478999999999999999999987642 22222 3332222222223 34677999999873 22334
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH--HHHHHHHhhCCCCcEEEEecCCCcccCCcC----------cHHHHHHHHHhcC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHNGTG----------SLAGAAAESLMLG 265 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~----------~~~~~~~~~~~~~ 265 (607)
..++..+|++++|+|++++.+..+. .+...+....++.|+++|+||+|+...... ...+........+
T Consensus 74 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 153 (182)
T 3bwd_D 74 PLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIG 153 (182)
T ss_dssp GGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHT
T ss_pred HhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcC
Confidence 4567899999999999886655543 244555554557999999999999764321 2333344445556
Q ss_pred CCCcEEeecCCCCChHHHHHHhccch
Q 007334 266 FGDPIAISAETGLGMTELYEALRPSV 291 (607)
Q Consensus 266 ~~~~i~iSA~~g~gi~eL~~~i~~~l 291 (607)
..+++++||++|.|++++++.|.+.+
T Consensus 154 ~~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 154 APAYIECSSKSQENVKGVFDAAIRVV 179 (182)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 55789999999999999999987654
No 150
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.82 E-value=4.7e-20 Score=173.92 Aligned_cols=147 Identities=22% Similarity=0.238 Sum_probs=104.0
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEE--EEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTV--YLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~--~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++.. ....+.+++.+.....+..++..+ .+|||||..+... ...
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----------~~~ 84 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKI--FVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSA----------MRE 84 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCS----------SHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHH----------HHH
Confidence 35899999999999999999999763 334444555555566667777654 4699999654321 123
Q ss_pred HHHhhccEEEEEeccchh-----------hH----HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEV-----------RA----VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVT 465 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~-----------~~----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (607)
.+++.+|++++|+|+++. .. ...++|+++|+||+|+.+...... +.. . ++.+. .
T Consensus 85 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~--~~~-~----~~~~~----~ 153 (183)
T 3kkq_A 85 QYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTR--DQG-K----EMATK----Y 153 (183)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCH--HHH-H----HHHHH----H
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCH--HHH-H----HHHHH----h
Confidence 567789999999999875 11 125789999999999976432211 111 1 11111 1
Q ss_pred CCCEEEcccC-CCCCHHHHHHHHHHHHH
Q 007334 466 GIPVVFTSAL-EGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 466 ~~~~v~iSA~-~g~gv~~l~~~i~~~~~ 492 (607)
+++++++||+ +|.|++++|+.+.+.+.
T Consensus 154 ~~~~~~~Sa~~~~~~v~~l~~~l~~~i~ 181 (183)
T 3kkq_A 154 NIPYIETSAKDPPLNVDKTFHDLVRVIR 181 (183)
T ss_dssp TCCEEEEBCSSSCBSHHHHHHHHHHHHH
T ss_pred CCeEEEeccCCCCCCHHHHHHHHHHHHh
Confidence 4789999999 99999999999988764
No 151
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.82 E-value=7.8e-20 Score=174.48 Aligned_cols=147 Identities=18% Similarity=0.154 Sum_probs=101.9
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
..++|+++|.+|||||||+|+|++....... | |.+.....+.+++..+.||||||..+.. .....+
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~--~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~~~ 93 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIVTTI--P--TIGFNVETVEYKNICFTVWDVGGQDKIR----------PLWRHY 93 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCEEEE--E--ETTEEEEEEEETTEEEEEEECC-----C----------TTHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCccccC--C--cCceeEEEEEECCEEEEEEECCCCHhHH----------HHHHHH
Confidence 4589999999999999999999976543322 2 3334445677788999999999975432 112356
Q ss_pred HhhccEEEEEeccchh-----------hHH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~-----------~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
+..+|++++|+|++++ ... ..++|+++|+||+|+.+.... +. +...+........+.
T Consensus 94 ~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~----~~----i~~~~~~~~~~~~~~ 165 (192)
T 2b6h_A 94 FQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPV----SE----LTDKLGLQHLRSRTW 165 (192)
T ss_dssp HHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH----HH----HHHHTTGGGCSSCCE
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCH----HH----HHHHhCcccccCCce
Confidence 7899999999999875 111 137899999999999765321 11 112222222333456
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+++++||++|.|++++|+.+.+.+
T Consensus 166 ~~~~~SA~~g~gi~~l~~~l~~~i 189 (192)
T 2b6h_A 166 YVQATCATQGTGLYDGLDWLSHEL 189 (192)
T ss_dssp EEEECBTTTTBTHHHHHHHHHHHT
T ss_pred EEEECcCCCcCCHHHHHHHHHHHH
Confidence 899999999999999999988754
No 152
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.82 E-value=1.4e-20 Score=176.42 Aligned_cols=146 Identities=22% Similarity=0.210 Sum_probs=103.3
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC---eEEEEEecCCCcccccccCcchhHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG---RTVYLVDTAGWLQREKEKGPASLSVMQS 399 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~---~~~~liDTpG~~~~~~~~~~~~~~~~~~ 399 (607)
..++|+++|.+|||||||+|+|++... .....++++.+.....+.+++ ..+.||||||..+.. ...
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~----------~~~ 73 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETF-GKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGG----------KML 73 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGT-THHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTC----------TTH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcC-CCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCcccc----------chh
Confidence 358999999999999999999997642 222234445666667777776 688999999965432 112
Q ss_pred HHHHhhccEEEEEeccchhh----------HHh------cCCc-EEEEEeCccCCCCcCch-HHHHHHHHhcHHHHHhhC
Q 007334 400 RKNLMRAHVVALVLDAEEVR----------AVE------EGRG-LVVIVNKMDLLSGRQNS-ALYKRVKEAVPQEIQTVI 461 (607)
Q Consensus 400 ~~~i~~ad~~llViD~~~~~----------~~~------~~~p-~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~ 461 (607)
..+++.+|++++|+|+++.. ... .+.| +++|+||+|+.+..... +....+ .+.
T Consensus 74 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~--------~~~- 144 (178)
T 2hxs_A 74 DKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRF--------CQE- 144 (178)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHH--------HHH-
T ss_pred hHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHH--------HHH-
Confidence 45678999999999998750 111 2566 89999999997542211 111111 111
Q ss_pred CCCCCCCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 462 PQVTGIPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 462 ~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
.+++++++||++|.|++++|+.+.+.+
T Consensus 145 ---~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 171 (178)
T 2hxs_A 145 ---NGFSSHFVSAKTGDSVFLCFQKVAAEI 171 (178)
T ss_dssp ---HTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred ---cCCcEEEEeCCCCCCHHHHHHHHHHHH
Confidence 256899999999999999999988765
No 153
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.82 E-value=6.1e-20 Score=169.24 Aligned_cols=156 Identities=18% Similarity=0.197 Sum_probs=109.1
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.+|||||||+|+|++.... ..... ++.+.....+...+ ..+.+|||||+.. +.....
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~D~~G~~~----------~~~~~~ 69 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFV--DECDP--TIEDSYRKQVVIDGETCLLDILDTAGQEE----------YSAMRD 69 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCC--SCCCT--TCCEEEEEEEEETTEEEEEEEEECCCCSS----------CCHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCc--cccCC--ccceEEEEEEEECCEEEEEEEEECCCchh----------hhHHHH
Confidence 47999999999999999999987542 22222 33343344444444 4588999999873 223345
Q ss_pred HHhhccCEEEEEEecCCCCCHhH-HHHHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLD-LEVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~-~~~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
.++..+|++++|+|++++.+..+ ..+...+... ..+.|+++|+||+|+... ..............++ +++++||+
T Consensus 70 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~ 147 (166)
T 2ce2_X 70 QYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAAR-TVESRQAQDLARSYGI-PYIETSAK 147 (166)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCC-CSCHHHHHHHHHHHTC-CEEEECTT
T ss_pred HhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhc-ccCHHHHHHHHHHcCC-eEEEecCC
Confidence 67788999999999987654443 2233333332 237899999999999863 2333444444555676 78999999
Q ss_pred CCCChHHHHHHhccchH
Q 007334 276 TGLGMTELYEALRPSVE 292 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~ 292 (607)
+|.|++++++.|.+.+.
T Consensus 148 ~~~gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 148 TRQGVEDAFYTLVREIR 164 (166)
T ss_dssp TCTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999987653
No 154
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.82 E-value=1.1e-19 Score=172.33 Aligned_cols=154 Identities=14% Similarity=0.055 Sum_probs=110.6
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+|+|.+|||||||+|+|++..+... .. .|.+.....+.+++ ..+.+|||||++ ++.
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~~~~~~--~~---~t~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~--- 81 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTGTYVQE--ES---PEGGRFKKEIVVDGQSYLLLIRDEGGPP----------ELQ--- 81 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHSSCCCC--CC---TTCEEEEEEEEETTEEEEEEEEECSSSC----------CHH---
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCC--cC---CCcceEEEEEEECCEEEEEEEEECCCCh----------hhh---
Confidence 46899999999999999999998765321 11 12233334555666 467889999997 222
Q ss_pred HHHhhccCEEEEEEecCCCCCHhH-HHHHHHHHhhC--CCCcEEEEecCCCccc--CCcCcHHHHHHHHHhcCCCCcEEe
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLD-LEVGKWLRKHA--PQIKPIVAMNKCESLH--NGTGSLAGAAAESLMLGFGDPIAI 272 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~-~~~~~~l~~~~--~~~p~ilV~NK~D~~~--~~~~~~~~~~~~~~~~~~~~~i~i 272 (607)
++..+|++++|+|++++.+..+ ..+...+.... .+.|+++|+||+|+.. .+....++....+...+...++++
T Consensus 82 --~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 159 (184)
T 3ihw_A 82 --FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYET 159 (184)
T ss_dssp --HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEE
T ss_pred --eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEe
Confidence 6788999999999998766555 22333343321 4689999999999952 333445555556666663478999
Q ss_pred ecCCCCChHHHHHHhccchHH
Q 007334 273 SAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 273 SA~~g~gi~eL~~~i~~~l~~ 293 (607)
||++|.|++++++.|.+.+.+
T Consensus 160 Sa~~~~gv~~lf~~l~~~i~~ 180 (184)
T 3ihw_A 160 CATYGLNVERVFQDVAQKVVA 180 (184)
T ss_dssp BTTTTBTHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999876644
No 155
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.82 E-value=8.1e-21 Score=179.16 Aligned_cols=146 Identities=18% Similarity=0.143 Sum_probs=84.0
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.++|+++|.+|||||||+|+|++.. ......++++.+.....+.+++ ..+.||||||..+... ....
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~~~~ 76 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDA-FNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT----------ITTA 76 (183)
T ss_dssp EEEEEEECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC-------------------CCT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhh----------hHHH
Confidence 5899999999999999999999653 4444556677777766777777 5788999999754421 1124
Q ss_pred HHhhccEEEEEeccchhh-----------HH---hcCCcEEEEEeCccCCCCcCc-hHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEVR-----------AV---EEGRGLVVIVNKMDLLSGRQN-SALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~~-----------~~---~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
+++.+|++|+|+|++++. .. ..++|+++|+||+|+.+.... .+....+ .+. .+
T Consensus 77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~--------~~~----~~ 144 (183)
T 2fu5_C 77 YYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKL--------ALD----YG 144 (183)
T ss_dssp TTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHH--------HHH----HT
T ss_pred HHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHH--------HHH----cC
Confidence 567899999999998751 11 137899999999999764322 1111111 111 25
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
++++++||++|.|++++|+.+.+.+.
T Consensus 145 ~~~~~~Sa~~~~~i~~l~~~l~~~i~ 170 (183)
T 2fu5_C 145 IKFMETSAKANINVENAFFTLARDIK 170 (183)
T ss_dssp CEEEECCC---CCHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999987664
No 156
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.82 E-value=8.1e-20 Score=173.45 Aligned_cols=149 Identities=18% Similarity=0.248 Sum_probs=105.8
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
..++|+++|.+|||||||+|+|++.......++.+ .....+.+++..+.+|||||+.+..... ..+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~Dt~G~~~~~~~~----------~~~ 86 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVG----VNLETLQYKNISFEVWDLGGQTGVRPYW----------RCY 86 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTT----CCEEEEEETTEEEEEEEECCSSSSCCCC----------SSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCc----eEEEEEEECCEEEEEEECCCCHhHHHHH----------HHH
Confidence 35899999999999999999998776544444333 2234566788999999999986543211 134
Q ss_pred HhhccEEEEEeccchh-----------hHHh----cCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV-----------RAVE----EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~-----------~~~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
++.+|++++|+|++++ .... .++|+++|+||+|+.+..... . +...+........++
T Consensus 87 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~----~----~~~~~~~~~~~~~~~ 158 (189)
T 2x77_A 87 FSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEA----E----IAEQLGVSSIMNRTW 158 (189)
T ss_dssp STTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHH----H----HHHHTTGGGCCSSCE
T ss_pred hhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHH----H----HHHHhChhhccCCce
Confidence 5689999999999865 1111 378999999999997653221 1 112222222233456
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
+++++||++|.|++++++.+.+.+.+
T Consensus 159 ~~~~~Sa~~~~gi~~l~~~l~~~i~~ 184 (189)
T 2x77_A 159 TIVKSSSKTGDGLVEGMDWLVERLRE 184 (189)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEEccCCCccCHHHHHHHHHHHHHh
Confidence 89999999999999999999887654
No 157
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.82 E-value=5.2e-20 Score=176.95 Aligned_cols=148 Identities=22% Similarity=0.217 Sum_probs=107.6
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++.. ....+++++.+.....+.+++. .+.||||||..+.. ....
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~~ 80 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDE--FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA----------AIRD 80 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC--CCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH----------HHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhH----------HHHH
Confidence 35899999999999999999999774 3456667777766667777775 67899999964431 1234
Q ss_pred HHHhhccEEEEEeccchhh-----------HH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEVR-----------AV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVT 465 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~-----------~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (607)
.++..+|++++|+|+++.. .. ..++|+++|+||+|+.+..... .+...+ +.+. .
T Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~-----~~~~----~ 149 (206)
T 2bov_A 81 NYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVS--VEEAKN-----RAEQ----W 149 (206)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSC--HHHHHH-----HHHH----H
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcccccccc--HHHHHH-----HHHH----h
Confidence 5677899999999998751 11 1378999999999997643211 111111 1111 1
Q ss_pred CCCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 466 GIPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 466 ~~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
+++++++||++|.|++++|+.+.+.+.+
T Consensus 150 ~~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 150 NVNYVETSAKTRANVDKVFFDLMREIRA 177 (206)
T ss_dssp TCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999887654
No 158
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.82 E-value=2.3e-19 Score=171.66 Aligned_cols=148 Identities=15% Similarity=0.148 Sum_probs=102.5
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC-------------------------------
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG------------------------------- 371 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~------------------------------- 371 (607)
..++|+++|.+|||||||+|+|++.. ......+.++.+.....+.+++
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDT-FHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSC-CCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCc-CCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 46899999999999999999999875 2233334444555555555544
Q ss_pred --------eEEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchhh-----------H-HhcCCcEEEEE
Q 007334 372 --------RTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEVR-----------A-VEEGRGLVVIV 431 (607)
Q Consensus 372 --------~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~~-----------~-~~~~~p~ivv~ 431 (607)
..+.||||||+.+.. ..+..+++.+|++|+|+|++++. . ...++|+++|+
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~ 154 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYA----------SIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVA 154 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCT----------TTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEE
T ss_pred cccCccceeEEEEEECCCcHHHH----------HHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEE
Confidence 678899999964432 12346778999999999998760 1 11358999999
Q ss_pred eCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 432 NKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 432 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
||+|+....... +.+.+ +.+. .+++++++||++|.|++++|+.|.+.+.+
T Consensus 155 NK~D~~~~~~~~---~~~~~-----~~~~----~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 155 NKIDKNKFQVDI---LEVQK-----YAQD----NNLLFIQTSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp ECTTCC-CCSCH---HHHHH-----HHHH----TTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred ECCCcccccCCH---HHHHH-----HHHH----cCCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 999932221111 11111 1111 25699999999999999999999887654
No 159
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.82 E-value=4.9e-20 Score=177.58 Aligned_cols=149 Identities=19% Similarity=0.206 Sum_probs=107.7
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.++|+++|.+|||||||+|+|++.. ......++++.+.....+.+++. .+.||||||..+.... ...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----------~~~ 76 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDT-YTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTI----------TSS 76 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCC-CCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCC----------CGG
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHH----------HHH
Confidence 5899999999999999999999764 33344566666666666777765 7889999997654211 124
Q ss_pred HHhhccEEEEEeccchhh----------HH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEVR----------AV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~~----------~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
++..+|++|+|+|++++. .. ..+.|+++|+||+|+.+...... +.. ..+.. ..++
T Consensus 77 ~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~-----~~~~~----~~~~ 145 (206)
T 2bcg_Y 77 YYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEY--DVA-----KEFAD----ANKM 145 (206)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCH--HHH-----HHHHH----HTTC
T ss_pred hccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCH--HHH-----HHHHH----HcCC
Confidence 567899999999998751 11 14689999999999986432211 111 11111 1257
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTYQKW 494 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~~~~ 494 (607)
+++++||++|.|++++|+.+.+.+.+.
T Consensus 146 ~~~~~Sa~~g~gi~~l~~~l~~~i~~~ 172 (206)
T 2bcg_Y 146 PFLETSALDSTNVEDAFLTMARQIKES 172 (206)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 899999999999999999998877543
No 160
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.82 E-value=1.9e-20 Score=178.40 Aligned_cols=150 Identities=17% Similarity=0.201 Sum_probs=102.1
Q ss_pred cCCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHH
Q 007334 322 KLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQS 399 (607)
Q Consensus 322 ~~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 399 (607)
+..++|+++|.+|||||||+|+|++..... ...+..+.+.....+.+++ ..+.||||||+.+.. ...
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~ 91 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSH-DSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYR----------AIT 91 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCS-SCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTC----------TTH
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhh----------hhh
Confidence 345899999999999999999999875332 2223223333333444443 477899999975432 112
Q ss_pred HHHHhhccEEEEEeccchhh----------HH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCC
Q 007334 400 RKNLMRAHVVALVLDAEEVR----------AV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVT 465 (607)
Q Consensus 400 ~~~i~~ad~~llViD~~~~~----------~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (607)
..+++.+|++|+|+|+++.. .. ..++|+++|+||+|+.+...... +.. ..+.. ..
T Consensus 92 ~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~-----~~~~~----~~ 160 (193)
T 2oil_A 92 SAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPT--EEA-----RMFAE----NN 160 (193)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCH--HHH-----HHHHH----HT
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCH--HHH-----HHHHH----Hc
Confidence 35678999999999998751 11 13789999999999975432111 111 11111 12
Q ss_pred CCCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 466 GIPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 466 ~~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
+++++++||++|.|++++|+.|.+.+.+
T Consensus 161 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 188 (193)
T 2oil_A 161 GLLFLETSALDSTNVELAFETVLKEIFA 188 (193)
T ss_dssp TCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 5689999999999999999999876643
No 161
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.82 E-value=8.8e-20 Score=170.82 Aligned_cols=147 Identities=17% Similarity=0.193 Sum_probs=103.5
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.++|+++|.+|||||||+|+|++.. ......++++.+.....+.+++. .+.||||||..+.. .....
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~~ 75 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNK-FDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFR----------SLRTP 75 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC-CCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGH----------HHHGG
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC-CCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhh----------hhHHH
Confidence 5899999999999999999999764 33444555666666667777774 78899999964331 12235
Q ss_pred HHhhccEEEEEeccchhh--------------HHh----cCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCC
Q 007334 402 NLMRAHVVALVLDAEEVR--------------AVE----EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQ 463 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~~--------------~~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (607)
++..+|++++|+|+++.. ... .++|+++|+||+|+.+.....+.... +.+ .
T Consensus 76 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~--------~~~---~ 144 (177)
T 1wms_A 76 FYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQA--------WCR---D 144 (177)
T ss_dssp GGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHH--------HHH---H
T ss_pred HHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHH--------HHH---h
Confidence 677899999999998751 011 57899999999999743221111111 111 1
Q ss_pred CCCCCEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 464 VTGIPVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 464 ~~~~~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
..+.+++++||++|.|++++|+.+.+.+.
T Consensus 145 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 173 (177)
T 1wms_A 145 NGDYPYFETSAKDATNVAAAFEEAVRRVL 173 (177)
T ss_dssp TTCCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cCCceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 23678999999999999999999887653
No 162
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.82 E-value=3.5e-20 Score=176.11 Aligned_cols=157 Identities=18% Similarity=0.135 Sum_probs=110.0
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+|+|.+|||||||+|+|++..+. ..... ++.+........++ ..+.+|||||+.... . .
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----------~-~ 85 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTKRFI--SEYDP--NLEDTYSSEETVDHQPVHLRVMDTADLDTPR----------N-C 85 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCC--SCCCT--TCCEEEEEEEEETTEEEEEEEEECCC---CC----------C-T
T ss_pred eEEEEEECCCCCcHHHHHHHHHhCCCC--cccCC--CccceeeEEEEECCEEEEEEEEECCCCCcch----------h-H
Confidence 368999999999999999999987642 22222 34333333334443 578899999987322 1 1
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHHH-HHHHHHhh----CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEe
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKH----APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAI 272 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~----~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~i 272 (607)
..++..+|++++|+|++++.+..+.. +...+... ..+.|+++|+||+|+...+....++....+...++ +++++
T Consensus 86 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~ 164 (187)
T 3c5c_A 86 ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGC-LFFEV 164 (187)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTC-EEEEC
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCC-cEEEE
Confidence 34778999999999999765554422 22333322 25789999999999987655555555566666777 78999
Q ss_pred ec-CCCCChHHHHHHhccchH
Q 007334 273 SA-ETGLGMTELYEALRPSVE 292 (607)
Q Consensus 273 SA-~~g~gi~eL~~~i~~~l~ 292 (607)
|| ++|.|++++++.|.+.+.
T Consensus 165 Sa~~~g~gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 165 SACLDFEHVQHVFHEAVREAR 185 (187)
T ss_dssp CSSSCSHHHHHHHHHHHHHHH
T ss_pred eecCccccHHHHHHHHHHHHh
Confidence 99 899999999999987653
No 163
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.82 E-value=1.6e-20 Score=174.30 Aligned_cols=143 Identities=18% Similarity=0.172 Sum_probs=99.9
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCce-eecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRV-LVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~-~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
.++|+++|.+|||||||+|+|++.... ...+..|++.... .+.+++ ..+.+|||||+.+.. ....
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Dt~G~~~~~----------~~~~ 73 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTK--TVQYQNELHKFLIWDTAGLERFR----------ALAP 73 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEE--EEEETTEEEEEEEEEECCSGGGG----------GGTH
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEE--EEEECCeEEEEEEEcCCCchhhh----------cccH
Confidence 489999999999999999999987522 2344455554433 344444 578899999975432 1123
Q ss_pred HHHhhccEEEEEeccchhh-----------HH---hcCCcEEEEEeCccCCCCcCch-HHHHHHHHhcHHHHHhhCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEVR-----------AV---EEGRGLVVIVNKMDLLSGRQNS-ALYKRVKEAVPQEIQTVIPQVT 465 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~-----------~~---~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 465 (607)
.++..+|++++|+|+++.. .. ....|+++|+||+|+.+..... +... .+... .
T Consensus 74 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~--------~~~~~----~ 141 (170)
T 1z0j_A 74 MYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAK--------DYADS----I 141 (170)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHH--------HHHHH----T
T ss_pred hhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHH--------HHHHH----c
Confidence 5678899999999998750 11 2467899999999997643221 1111 11111 2
Q ss_pred CCCEEEcccCCCCCHHHHHHHHHHH
Q 007334 466 GIPVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 466 ~~~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
+.+++++||++|.|++++|+.+.+.
T Consensus 142 ~~~~~~~Sa~~~~~i~~l~~~i~~~ 166 (170)
T 1z0j_A 142 HAIFVETSAKNAININELFIEISRR 166 (170)
T ss_dssp TCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCcCHHHHHHHHHHH
Confidence 5689999999999999999998764
No 164
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.82 E-value=5.5e-20 Score=173.33 Aligned_cols=149 Identities=23% Similarity=0.286 Sum_probs=103.2
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
..++|+++|.+|||||||+|+|++.......++.|.+. ..+.+++..+.+|||||+.+.... ...+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~----~~~~~~~~~~~i~Dt~G~~~~~~~----------~~~~ 82 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNV----ETLSYKNLKLNVWDLGGQTSIRPY----------WRCY 82 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCE----EEEEETTEEEEEEEEC----CCTT----------GGGT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccce----EEEEECCEEEEEEECCCCHhHHHH----------HHHH
Confidence 35899999999999999999999765555555555432 345678899999999997654211 1245
Q ss_pred HhhccEEEEEeccchh-----------hHH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~-----------~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
+..+|++++|+|+++. ... ..++|+++|+||+|+.+..... .+ ...+........+.
T Consensus 83 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~----~i----~~~~~~~~~~~~~~ 154 (183)
T 1moz_A 83 YADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSAS----EV----SKELNLVELKDRSW 154 (183)
T ss_dssp TTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHH----HH----HHHTTTTTCCSSCE
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHH----HH----HHHhCcccccCCce
Confidence 6789999999999865 111 2578999999999997653211 11 11111111122345
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
+++++||++|.|++++++.+.+.+.+
T Consensus 155 ~~~~~Sa~~~~gi~~l~~~l~~~~~~ 180 (183)
T 1moz_A 155 SIVASSAIKGEGITEGLDWLIDVIKE 180 (183)
T ss_dssp EEEEEBGGGTBTHHHHHHHHHHHHHH
T ss_pred EEEEccCCCCcCHHHHHHHHHHHHHh
Confidence 89999999999999999999887654
No 165
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.82 E-value=4.2e-20 Score=170.99 Aligned_cols=146 Identities=21% Similarity=0.169 Sum_probs=101.2
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.++|+++|.+|||||||+|+|++... ...+.+++.+.....+.+++ ..+.+|||||+.+.. .....
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~----------~~~~~ 70 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFT----------AMRDL 70 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCC--CCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSST----------THHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHH----------HHHHH
Confidence 47999999999999999999997632 33344455554444555554 367899999965432 12235
Q ss_pred HHhhccEEEEEeccchh-----------hHH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~-----------~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
++..+|++++|+|+++. ... ..++|+++|+||+|+.+..... .+.. ..+.+. ..+
T Consensus 71 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~-----~~~~~~---~~~ 140 (167)
T 1c1y_A 71 YMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVG--KEQG-----QNLARQ---WCN 140 (167)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSC--HHHH-----HHHHHH---TTS
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCC--HHHH-----HHHHHH---ccC
Confidence 67789999999999875 111 1379999999999997543211 1111 111111 125
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
.+++++||++|.|++++++.+.+.+
T Consensus 141 ~~~~~~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 141 CAFLESSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp CEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CcEEEecCCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999988754
No 166
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.82 E-value=6.2e-20 Score=173.17 Aligned_cols=145 Identities=18% Similarity=0.228 Sum_probs=105.0
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
..++|+++|.+|||||||+|+|++.......++.|++.. .+.+++..+.||||||+.+.... ...+
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~----~~~~~~~~~~i~Dt~G~~~~~~~----------~~~~ 85 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE----EIVINNTRFLMWDIGGQESLRSS----------WNTY 85 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCE----EEEETTEEEEEEEESSSGGGTCG----------GGGG
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeE----EEEECCEEEEEEECCCCHhHHHH----------HHHH
Confidence 468999999999999999999998876566666665543 45668899999999997554211 1245
Q ss_pred HhhccEEEEEeccchh-----------hHH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~-----------~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
++.+|++++|+|+++. ... ..++|+++|+||+|+.+..... .+. +.+........++
T Consensus 86 ~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~----~i~----~~~~~~~~~~~~~ 157 (181)
T 2h17_A 86 YTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVA----EIS----QFLKLTSIKDHQW 157 (181)
T ss_dssp GTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHH----HHH----HHTTGGGCCSSCE
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHH----HHH----HHhCcccccCCce
Confidence 6789999999999875 111 2578999999999997643211 111 1111111223456
Q ss_pred CEEEcccCCCCCHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVID 489 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~ 489 (607)
+++++||++|.|++++|+.|.+
T Consensus 158 ~~~~~Sa~~g~gi~~l~~~l~~ 179 (181)
T 2h17_A 158 HIQACCALTGEGLCQGLEWMMS 179 (181)
T ss_dssp EEEECBTTTTBTHHHHHHHHHT
T ss_pred EEEEccCCCCcCHHHHHHHHHh
Confidence 8999999999999999998864
No 167
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.82 E-value=5.5e-20 Score=174.72 Aligned_cols=149 Identities=16% Similarity=0.112 Sum_probs=103.5
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
..++|+++|.+|||||||+|+|++.... ....+.+.. ....+...+..+.||||||..+.. .....+
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~--~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~~~~ 87 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFN-EDMIPTVGF--NMRKITKGNVTIKLWDIGGQPRFR----------SMWERY 87 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC-CSCCCCCSE--EEEEEEETTEEEEEEEECCSHHHH----------TTHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCC-CccCCCCce--eEEEEEeCCEEEEEEECCCCHhHH----------HHHHHH
Confidence 3589999999999999999999976532 122222222 223466788899999999964431 113456
Q ss_pred HhhccEEEEEeccchh-----------hHH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~-----------~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
+..+|++|+|+|+++. ... ..++|+++|+||+|+.+..... .+ ...+........+.
T Consensus 88 ~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~----~~----~~~~~~~~~~~~~~ 159 (188)
T 1zd9_A 88 CRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEK----EL----IEKMNLSAIQDREI 159 (188)
T ss_dssp HTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHH----HH----HHHTTGGGCCSSCE
T ss_pred HccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHH----HH----HHHhChhhhccCCe
Confidence 7899999999999864 111 2578999999999997653211 11 11222222233467
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
+++++||++|.|++++|+.+.+.+.
T Consensus 160 ~~~~~SA~~g~gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 160 CCYSISCKEKDNIDITLQWLIQHSK 184 (188)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 8999999999999999999887543
No 168
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.82 E-value=1.1e-20 Score=182.90 Aligned_cols=160 Identities=13% Similarity=0.111 Sum_probs=113.9
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+|+|.+|||||||+|+|++..+ ...... ++.+.....+..++ ..+.+|||||++... ..+
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~~~--~~~~~~--t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~ 74 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIP--TVFDNFSANVAVDGQIVNLGLWDTAGQEDYS----------RLR 74 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCC--CSSCCC--SSCCCEEEEEECSSCEEEEEEECCCCCCCCC----------C--
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC--CccCCC--ccceeEEEEEEECCEEEEEEEEECCCcHHHH----------HHH
Confidence 36899999999999999999998764 222222 34444444444444 589999999997322 233
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH--HHHHHHHhhCCCCcEEEEecCCCcccCCc--------CcHHHHHHHHHhcCCC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHNGT--------GSLAGAAAESLMLGFG 267 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~D~~~~~~--------~~~~~~~~~~~~~~~~ 267 (607)
..++..+|++|+|+|++++.+..+. .+...+....++.|+++|+||+|+..... ............++..
T Consensus 75 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 154 (212)
T 2j0v_A 75 PLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAA 154 (212)
T ss_dssp CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCS
T ss_pred HhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCc
Confidence 4578899999999999987655542 34455555456899999999999976432 1233344445556655
Q ss_pred CcEEeecCCCCChHHHHHHhccchHH
Q 007334 268 DPIAISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 268 ~~i~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
+++++||++|.|++++++.|.+.+.+
T Consensus 155 ~~~~~Sa~~g~gi~~l~~~l~~~~~~ 180 (212)
T 2j0v_A 155 AYIECSSKTQQNVKAVFDTAIKVVLQ 180 (212)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred eEEEccCCCCCCHHHHHHHHHHHHhh
Confidence 78999999999999999999877653
No 169
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.82 E-value=4.3e-20 Score=191.54 Aligned_cols=198 Identities=19% Similarity=0.178 Sum_probs=132.3
Q ss_pred cCccCCCCCCCCCCccccccccccccCC-cccccccccCCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeee
Q 007334 82 EALEDTHVEPEPDGVVEDHKVKPLYEKP-VDFTKIDINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDI 160 (607)
Q Consensus 82 ~g~g~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~ 160 (607)
.|.|+..+....+.. . +....-..- ...-....+.++.|+|||+||||||||+|+|++.+.. +.+.++ +|.+.
T Consensus 122 gG~Gn~~f~~~~~~~--p-~~~~~g~~g~~~~~~leLk~la~V~lvG~~nvGKSTLln~L~~~~~~-i~~~~f--tTl~p 195 (342)
T 1lnz_A 122 GGRGNSRFATPANPA--P-QLSENGEPGKERYIVLELKVLADVGLVGFPSVGKSTLLSVVSSAKPK-IADYHF--TTLVP 195 (342)
T ss_dssp CCCCGGGSCBTTBSS--C-CCCCCCCCCCEEEEEEEEECCCCEEEESSTTSSHHHHHHHSEEECCE-ESSTTS--SCCCC
T ss_pred CccCccccccccccc--c-ccccCCCCcchhhHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcCCCc-cccCCc--cccCc
Confidence 567788887777666 2 222111110 1111123344689999999999999999999987654 466776 88888
Q ss_pred EEEEeeeCC-eeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCC---CCCHhHH-HHHHHHHhhC---
Q 007334 161 REGLAKLGD-LRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRS---GLHPLDL-EVGKWLRKHA--- 232 (607)
Q Consensus 161 ~~~~~~~~~-~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~---~~~~~~~-~~~~~l~~~~--- 232 (607)
..+.+.+.+ ..+.+|||||++........ .....+..+..+|++|+|+|+++ .....+. .+...|....
T Consensus 196 ~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~---l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l 272 (342)
T 1lnz_A 196 NLGMVETDDGRSFVMADLPGLIEGAHQGVG---LGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRL 272 (342)
T ss_dssp CEEEEECSSSCEEEEEEHHHHHHHTTCTTT---THHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSST
T ss_pred eEEEEEeCCCceEEEecCCCCcccccccch---hHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhh
Confidence 888888765 88999999998743221111 11223455678999999999987 3333432 2445555432
Q ss_pred CCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCC-CCcEEeecCCCCChHHHHHHhccchH
Q 007334 233 PQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGF-GDPIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 233 ~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~-~~~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
.++|+++|+||+|+.... +........+.. .+++++||++++|+++|++.|.+.+.
T Consensus 273 ~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~ 329 (342)
T 1lnz_A 273 TERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLE 329 (342)
T ss_dssp TTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHT
T ss_pred cCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHHHh
Confidence 378999999999997532 111222233331 37899999999999999999987764
No 170
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.82 E-value=3.3e-20 Score=175.55 Aligned_cols=156 Identities=13% Similarity=0.083 Sum_probs=110.6
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
...+|+++|.+|||||||+|+|++... .... .|.......+.+++..+.+|||||+. ++...+.
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~~--~~~~----~t~~~~~~~~~~~~~~~~~~Dt~G~~----------~~~~~~~ 80 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGEDV--DTIS----PTLGFNIKTLEHRGFKLNIWDVGGQK----------SLRSYWR 80 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCC--SSCC----CCSSEEEEEEEETTEEEEEEEECCSH----------HHHTTGG
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCC--Cccc----ccCccceEEEEECCEEEEEEECCCCH----------hHHHHHH
Confidence 357899999999999999999998762 2212 23334455666788999999999997 4445556
Q ss_pred HHhhccCEEEEEEecCCCCCHhHH-H-HHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHH-----hcCCCCcE
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDL-E-VGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESL-----MLGFGDPI 270 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~-~-~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~-----~~~~~~~i 270 (607)
.++..+|++++|+|++++.+..+. . +...++.. ..+.|+++|+||+|+..... ..+...... ..++ +++
T Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~-~~~ 157 (186)
T 1ksh_A 81 NYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS--CNAIQEALELDSIRSHHW-RIQ 157 (186)
T ss_dssp GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCE-EEE
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCC--HHHHHHHhChhhccCCce-EEE
Confidence 678999999999999987665542 1 22222221 24789999999999976432 122211111 1122 579
Q ss_pred EeecCCCCChHHHHHHhccchHH
Q 007334 271 AISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 271 ~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
++||++|.|++++++.|.+.+.+
T Consensus 158 ~~Sa~~~~gi~~l~~~l~~~i~~ 180 (186)
T 1ksh_A 158 GCSAVTGEDLLPGIDWLLDDISS 180 (186)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHT
T ss_pred EeeCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999887654
No 171
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.82 E-value=1e-19 Score=173.59 Aligned_cols=149 Identities=18% Similarity=0.207 Sum_probs=104.2
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeE--EEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRT--VYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++.. ....+.+|+.+.....+.+++.. +.||||||..+... ...
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------~~~ 89 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGE--IPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDR----------LRP 89 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC--CCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTT----------TGG
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCC--CCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHH----------HhH
Confidence 46899999999999999999999874 34455556666666666677765 48999999654421 112
Q ss_pred HHHhhccEEEEEeccchhh--------------HHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEVR--------------AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~--------------~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
.+++.+|++++|+|+++.. ....++|+++|+||+|+.+........+... ++.+. .+
T Consensus 90 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~----~~ 160 (194)
T 3reg_A 90 LSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGD-----DLCQK----LG 160 (194)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHH-----HHHHH----HT
T ss_pred hhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHH-----HHHHh----cC
Confidence 4567899999999998751 1123689999999999985421111111111 11111 14
Q ss_pred CC-EEEcccCCCCCHHHHHHHHHHHHH
Q 007334 467 IP-VVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 467 ~~-~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
++ ++++||++|.|++++|+.+.+.+.
T Consensus 161 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 187 (194)
T 3reg_A 161 CVAYIEASSVAKIGLNEVFEKSVDCIF 187 (194)
T ss_dssp CSCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred CCEEEEeecCCCCCHHHHHHHHHHHHH
Confidence 45 999999999999999999988654
No 172
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.82 E-value=9.1e-20 Score=172.51 Aligned_cols=149 Identities=19% Similarity=0.237 Sum_probs=104.2
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
..++|+++|.+|||||||+|+|++.......++.+ .....+.+++..+.+|||||+.+... ....+
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~Dt~G~~~~~~----------~~~~~ 82 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLG----FNIKTLEHRGFKLNIWDVGGQKSLRS----------YWRNY 82 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSS----EEEEEEEETTEEEEEEEECCSHHHHT----------TGGGG
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCc----cceEEEEECCEEEEEEECCCCHhHHH----------HHHHH
Confidence 35899999999999999999999875222222222 33445667889999999999754321 11245
Q ss_pred HhhccEEEEEeccchh-----------hHH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~-----------~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
++.+|++++|+|++++ ... ..++|+++|+||+|+.+..... .+. +.+........++
T Consensus 83 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~----~~~----~~~~~~~~~~~~~ 154 (186)
T 1ksh_A 83 FESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCN----AIQ----EALELDSIRSHHW 154 (186)
T ss_dssp CTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHH----HHH----HHTTGGGCCSSCE
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHH----HHH----HHhChhhccCCce
Confidence 6789999999999875 111 1478999999999997653221 111 1111111223456
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
+++++||++|.|++++++.+.+.+.+
T Consensus 155 ~~~~~Sa~~~~gi~~l~~~l~~~i~~ 180 (186)
T 1ksh_A 155 RIQGCSAVTGEDLLPGIDWLLDDISS 180 (186)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred EEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 89999999999999999999887653
No 173
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.82 E-value=3.3e-20 Score=173.79 Aligned_cols=147 Identities=21% Similarity=0.224 Sum_probs=101.0
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++.... ....+.++.+.....+..++ ..+.||||||..+.. ....
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~~ 82 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFM-ADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFR----------AVTR 82 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC-SSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTC----------HHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhh----------hhHH
Confidence 3589999999999999999999977532 22222233333344455555 477899999954331 2245
Q ss_pred HHHhhccEEEEEeccchhh-----------H---HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEVR-----------A---VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~-----------~---~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
.+++.+|++++|+|+++.. . ...++|+++|+||+|+.+..... .+... ++.+. .+
T Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~-----~~~~~----~~ 151 (179)
T 1z0f_A 83 SYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVT--YEEAK-----QFAEE----NG 151 (179)
T ss_dssp HHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC--HHHHH-----HHHHH----TT
T ss_pred HHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccC--HHHHH-----HHHHH----cC
Confidence 6788999999999998751 1 11578999999999997543211 11111 11111 25
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
++++++||++|.|++++|+.+.+.+
T Consensus 152 ~~~~~~Sa~~~~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 152 LLFLEASAKTGENVEDAFLEAAKKI 176 (179)
T ss_dssp CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999988754
No 174
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.82 E-value=7.4e-20 Score=184.59 Aligned_cols=161 Identities=25% Similarity=0.323 Sum_probs=119.0
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
.++|+|+|.+|||||||+|+|++... .++..++ +|.+...+.+.+.+..+.+|||||+....+.... + ..+..
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~--~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~--~~~~~ 75 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPG--VTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSID--E--LIARN 75 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCE-EEEECTT--SSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHH--H--HHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCC--eEEEeeEEEEEECCceEEEEeCCCccccccCCHH--H--HHHHH
Confidence 46899999999999999999999876 5777888 8999988889999999999999999854432111 1 12233
Q ss_pred Hh--hccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCC
Q 007334 200 VL--AKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETG 277 (607)
Q Consensus 200 ~~--~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g 277 (607)
++ ..+|++++|+|++++ .....+...+.+. ...|+++|+||+|+......... .......++. +++++||++|
T Consensus 76 ~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~-~~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~-~~~~~Sa~~g 150 (271)
T 3k53_A 76 FILDGNADVIVDIVDSTCL--MRNLFLTLELFEM-EVKNIILVLNKFDLLKKKGAKID-IKKMRKELGV-PVIPTNAKKG 150 (271)
T ss_dssp HHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHT-TCCSEEEEEECHHHHHHHTCCCC-HHHHHHHHSS-CEEECBGGGT
T ss_pred hhhccCCcEEEEEecCCcc--hhhHHHHHHHHhc-CCCCEEEEEEChhcCcccccHHH-HHHHHHHcCC-cEEEEEeCCC
Confidence 33 689999999999874 2223333344443 12899999999998754322111 2223345566 7899999999
Q ss_pred CChHHHHHHhccchH
Q 007334 278 LGMTELYEALRPSVE 292 (607)
Q Consensus 278 ~gi~eL~~~i~~~l~ 292 (607)
.|++++++.|.+.+.
T Consensus 151 ~gi~~l~~~i~~~~~ 165 (271)
T 3k53_A 151 EGVEELKRMIALMAE 165 (271)
T ss_dssp BTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999987654
No 175
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.82 E-value=1e-20 Score=184.03 Aligned_cols=160 Identities=20% Similarity=0.140 Sum_probs=107.3
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeee-ccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALV-YNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGM 196 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v-~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~ 196 (607)
..+|+|+|.+|||||||+|+|++...... ....+ ++...... ....+ ..+.+|||||+.... ..
T Consensus 11 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~--~~~~~~~~-~~~~~~~~~~~l~Dt~G~~~~~----------~~ 77 (218)
T 4djt_A 11 TYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVG--AVNHPVTF-LDDQGNVIKFNVWDTAGQEKKA----------VL 77 (218)
T ss_dssp EEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTT--EEEEEEEE-EBTTSCEEEEEEEEECSGGGTS----------CC
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccc--eeeEEEEE-EeCCCcEEEEEEEecCCchhhc----------hH
Confidence 46899999999999999999997654221 22222 22222111 11122 679999999987322 23
Q ss_pred HHHHhhccCEEEEEEecCCCCCHhHHH-HHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeec
Q 007334 197 TANVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISA 274 (607)
Q Consensus 197 ~~~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA 274 (607)
...++..+|++|+|+|++++.+..+.. +...+... ..+.|+++|+||+|+...+..............+. +++++||
T Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa 156 (218)
T 4djt_A 78 KDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNY-EYFEISA 156 (218)
T ss_dssp CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCC-EEEEEBT
T ss_pred HHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCC-cEEEEec
Confidence 345678899999999999876655532 33333332 33589999999999987544444444444444555 7899999
Q ss_pred CCCCChHHHHHHhccchHH
Q 007334 275 ETGLGMTELYEALRPSVED 293 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~~l~~ 293 (607)
++|.|++++++.|.+.+.+
T Consensus 157 ~~g~gv~~l~~~l~~~~~~ 175 (218)
T 4djt_A 157 KTAHNFGLPFLHLARIFTG 175 (218)
T ss_dssp TTTBTTTHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999887754
No 176
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.82 E-value=2.4e-20 Score=179.58 Aligned_cols=160 Identities=16% Similarity=0.193 Sum_probs=111.5
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+|+|.+|||||||+|+|++...... ..+. ++.+.....+...+ ..+.+|||||+... ...+
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~t--~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~ 74 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQ-YKAT--IGADFLTKEVMVDDRLVTMQIWDTAGQERF----------QSLG 74 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSS-CCCC--CSEEEEEEEEESSSCEEEEEEEEECSSGGG----------SCSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCC-CCCc--ccceEEEEEEEECCEEEEEEEEeCCCcHHH----------HHhH
Confidence 46899999999999999999998764321 1222 45566555555554 57999999998732 2223
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHHH-HHHHHHhh-C----CCCcEEEEecCCCcccCCcCcHHHHHHHHH-hcCCCCcE
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKH-A----PQIKPIVAMNKCESLHNGTGSLAGAAAESL-MLGFGDPI 270 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~-~----~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~-~~~~~~~i 270 (607)
..++..+|++|+|+|++++.+..+.. +...+... . .+.|+++|+||+|+... ............ ..+. +++
T Consensus 75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~-~~~ 152 (207)
T 1vg8_A 75 VAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENR-QVATKRAQAWCYSKNNI-PYF 152 (207)
T ss_dssp CGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC-CSCHHHHHHHHHHTTSC-CEE
T ss_pred HHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCccc-ccCHHHHHHHHHhcCCc-eEE
Confidence 45678999999999998865554421 22222222 1 36899999999999843 333333333333 3344 789
Q ss_pred EeecCCCCChHHHHHHhccchHHH
Q 007334 271 AISAETGLGMTELYEALRPSVEDY 294 (607)
Q Consensus 271 ~iSA~~g~gi~eL~~~i~~~l~~~ 294 (607)
++||++|.|++++++.|.+.+.+.
T Consensus 153 ~~Sa~~g~gi~~l~~~l~~~~~~~ 176 (207)
T 1vg8_A 153 ETSAKEAINVEQAFQTIARNALKQ 176 (207)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999877553
No 177
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=5.2e-20 Score=175.93 Aligned_cols=158 Identities=19% Similarity=0.208 Sum_probs=109.0
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC--CeeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG--DLRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+++|.+|||||||+|+|++....... .+ +..+......... ...+.+|||||+. ++....
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-~~---t~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~ 73 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKGTFRDTY-IP---TIEDTYRQVISCDKSVCTLQITDTTGSH----------QFPAMQ 73 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHSCCCCTT-SC---CCCEEEEEEEEETTEEEEEEEEECCGGG----------SCHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHcCCCCCcc-cC---ccccceeEEEEECCEEEEEEEEeCCChH----------HhHHHH
Confidence 468999999999999999999987643111 11 1111111222233 3578999999987 233445
Q ss_pred HHHhhccCEEEEEEecCCCCCHhH-HHHHHHHHhh---CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEee
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLD-LEVGKWLRKH---APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAIS 273 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~-~~~~~~l~~~---~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iS 273 (607)
..++..+|++++|+|++++.+..+ ..+..++... ..+.|+++|+||+|+... ..............++ +++++|
T Consensus 74 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~-~~~~~S 151 (199)
T 2gf0_A 74 RLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQR-EVDTREAQAVAQEWKC-AFMETS 151 (199)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSC-SSCHHHHHHHHHHHTC-EEEECB
T ss_pred HHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCcc-ccCHHHHHHHHHHhCC-eEEEEe
Confidence 667889999999999987655444 2244444443 236899999999999763 2333444444455566 789999
Q ss_pred cCCCCChHHHHHHhccchHH
Q 007334 274 AETGLGMTELYEALRPSVED 293 (607)
Q Consensus 274 A~~g~gi~eL~~~i~~~l~~ 293 (607)
|++|.|+++++++|.+.+..
T Consensus 152 a~~~~gi~~l~~~l~~~~~~ 171 (199)
T 2gf0_A 152 AKMNYNVKELFQELLTLETR 171 (199)
T ss_dssp TTTTBSHHHHHHHHHHHCSS
T ss_pred cCCCCCHHHHHHHHHHHHhh
Confidence 99999999999999876643
No 178
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.82 E-value=2e-20 Score=178.67 Aligned_cols=151 Identities=17% Similarity=0.174 Sum_probs=103.1
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeE--EEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRT--VYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.+||+++|.+|||||||+|+|++.....+..+++++.+.....+.+++.. +.+|||+|..... .. ....
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~------~~---~~~~ 76 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGEN------EW---LHDH 76 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----------CT---TGGG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchh------hh---HHHh
Confidence 47999999999999999999997655555666677777777777788774 4689999964321 11 0123
Q ss_pred HHhhccEEEEEeccchh-----------hHH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~-----------~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
+++.+|++++|+|+++. ... ..++|+++|+||+|+........ +.. ..+.. ..+
T Consensus 77 ~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~--~~~-----~~~a~----~~~ 145 (192)
T 2cjw_A 77 CMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSV--SEG-----RAXAV----VFD 145 (192)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCH--HHH-----HHHHH----HTT
T ss_pred hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccH--HHH-----HHHHH----HhC
Confidence 55679999999999874 011 13789999999999865322111 100 01111 125
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTYQKW 494 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~~~~ 494 (607)
++++++||++|.|++++|+.+.+.+...
T Consensus 146 ~~~~e~SA~~g~~v~~lf~~l~~~~~~~ 173 (192)
T 2cjw_A 146 XKFIETSAAVQHNVKELFEGIVRQVRLR 173 (192)
T ss_dssp CEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CceEEeccccCCCHHHHHHHHHHHHHhh
Confidence 6899999999999999999998876543
No 179
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.82 E-value=3.6e-20 Score=177.81 Aligned_cols=154 Identities=14% Similarity=0.119 Sum_probs=102.2
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
..+|+++|.+|||||||+|+|++........ |.......+.+++..+.+|||||+.. +...+..
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~------t~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~ 88 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDDRLGQHVP------TLHPTSEELTIAGMTFTTFDLGGHIQ----------ARRVWKN 88 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC------C------CCCCSCEEEEETTEEEEEEEECC--------------CCGGGG
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCccCC------CCCceeEEEEECCEEEEEEECCCcHh----------hHHHHHH
Confidence 3589999999999999999999876543322 22222456667889999999999872 3333456
Q ss_pred HhhccCEEEEEEecCCCCCHhHHH--HHHHHHh-hCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhc------------
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDLE--VGKWLRK-HAPQIKPIVAMNKCESLHNGTGSLAGAAAESLML------------ 264 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~~--~~~~l~~-~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~------------ 264 (607)
++..+|++++|+|++++.+..+.. +...++. ...+.|+++|+||+|+... ...++....+...
T Consensus 89 ~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (198)
T 1f6b_A 89 YLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEA--ISEERLREMFGLYGQTTGKGSVSLK 166 (198)
T ss_dssp GGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTC--CCHHHHHHHHTCTTTCCCSSCCCTT
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCcccc--CCHHHHHHHhCcccccccccccccc
Confidence 788999999999999876555421 2222221 1247899999999999752 2233333222211
Q ss_pred ----CCCCcEEeecCCCCChHHHHHHhccch
Q 007334 265 ----GFGDPIAISAETGLGMTELYEALRPSV 291 (607)
Q Consensus 265 ----~~~~~i~iSA~~g~gi~eL~~~i~~~l 291 (607)
...+++++||++|.|+++++++|.+.+
T Consensus 167 ~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 167 ELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp TCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred cccCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence 112579999999999999999987653
No 180
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.82 E-value=2.5e-20 Score=174.60 Aligned_cols=146 Identities=20% Similarity=0.213 Sum_probs=105.5
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.++|+++|.+|||||||+|+|++.. ......++++.+.....+.+++. .+.||||||..+... ....
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~----------~~~~ 82 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDS-FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS----------LIPS 82 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC-CCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGG----------GSHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC-CCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHH----------HHHH
Confidence 4799999999999999999999764 33445666777777777777774 678999999654421 1235
Q ss_pred HHhhccEEEEEeccchh--------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEV--------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~--------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
++..+|++++|+|+++. .....++|+++|+||+|+.+...... +.... .... .++
T Consensus 83 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~-----~~~~----~~~ 151 (179)
T 2y8e_A 83 YIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVST--EEGER-----KAKE----LNV 151 (179)
T ss_dssp HHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCH--HHHHH-----HHHH----HTC
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCH--HHHHH-----HHHH----cCC
Confidence 67789999999999875 01124789999999999975432211 11110 1111 156
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+++++||++|.|++++++.+.+.+
T Consensus 152 ~~~~~Sa~~~~~i~~l~~~l~~~~ 175 (179)
T 2y8e_A 152 MFIETSAKAGYNVKQLFRRVAAAL 175 (179)
T ss_dssp EEEEEBTTTTBSHHHHHHHHHHTC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHH
Confidence 899999999999999999887643
No 181
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.82 E-value=1.1e-19 Score=172.24 Aligned_cols=160 Identities=25% Similarity=0.359 Sum_probs=114.3
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANV 200 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 200 (607)
++|+++|.+|||||||+|+|++... .+...++ +|.+...+.+.+.+..+.+|||||+....+.. . .......+
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~~~-~~~~~~~--~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-~---~~~~~~~~ 80 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGENV-YIGNWPG--VTVEKKEGEFEYNGEKFKVVDLPGVYSLTANS-I---DEIIARDY 80 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTCE-EEEECTT--SCCEEEEEEEEETTEEEEEEECCCCSCCSSSS-H---HHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc-cccCCCC--eeccceEEEEEeCCcEEEEEECCCcCcccccc-H---HHHHHHHH
Confidence 6899999999999999999998754 3555676 78888888888889999999999998543211 1 11122334
Q ss_pred h--hccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCC
Q 007334 201 L--AKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGL 278 (607)
Q Consensus 201 ~--~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~ 278 (607)
+ ..+|++++|+|.++. .....+...+.. .+.|+++|+||+|+........ ........++. +++++||++|.
T Consensus 81 ~~~~~~~~~i~v~d~~~~--~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~-~~~~~~~~~~~-~~~~~Sa~~~~ 154 (188)
T 2wjg_A 81 IINEKPDLVVNIVDATAL--ERNLYLTLQLME--MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGV-KVVPLSAAKKM 154 (188)
T ss_dssp HHHHCCSEEEEEEEGGGH--HHHHHHHHHHHT--TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTS-CEEECBGGGTB
T ss_pred HhccCCCEEEEEecchhH--HHHHHHHHHHHh--cCCCEEEEEEhhhccccccchH-HHHHHHHHhCC-CeEEEEecCCC
Confidence 4 359999999999751 111223333433 3789999999999876433221 12223334555 78999999999
Q ss_pred ChHHHHHHhccchHH
Q 007334 279 GMTELYEALRPSVED 293 (607)
Q Consensus 279 gi~eL~~~i~~~l~~ 293 (607)
|++++++.|.+.+..
T Consensus 155 ~v~~l~~~i~~~~~~ 169 (188)
T 2wjg_A 155 GIEELKKAISIAVKD 169 (188)
T ss_dssp SHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999877654
No 182
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=2e-20 Score=178.43 Aligned_cols=148 Identities=20% Similarity=0.196 Sum_probs=102.9
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCce-eecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRV-LVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~-~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
..++|+++|.+|||||||+|+|++.... .+.+..|++.......+...+..+.||||||..+... ....
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------~~~~ 91 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHS----------LAPM 91 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGG----------GTHH
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHh----------hhHH
Confidence 4589999999999999999999987532 3555666665544333323445788999999654321 1235
Q ss_pred HHhhccEEEEEeccchhh----------HH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEVR----------AV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~~----------~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
++..+|++|+|+|+++.. .. ..++|+++|+||+|+.+..... .+.. .++.+ ..++
T Consensus 92 ~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~--~~~~-----~~~~~----~~~~ 160 (192)
T 2fg5_A 92 YYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVP--LKDA-----KEYAE----SIGA 160 (192)
T ss_dssp HHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC--HHHH-----HHHHH----TTTC
T ss_pred hhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccC--HHHH-----HHHHH----HcCC
Confidence 678899999999998751 11 1378999999999997532211 1111 11111 2357
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+++++||++|.|++++++.|.+.+
T Consensus 161 ~~~~~Sa~~~~gi~~l~~~l~~~i 184 (192)
T 2fg5_A 161 IVVETSAKNAINIEELFQGISRQI 184 (192)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHTC
T ss_pred EEEEEeCCCCcCHHHHHHHHHHHH
Confidence 899999999999999999987754
No 183
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.82 E-value=4.8e-20 Score=175.49 Aligned_cols=148 Identities=20% Similarity=0.134 Sum_probs=102.6
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++.... ....++++.+.....+.+++. .+.||||||..+... ...
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------~~~ 88 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRS----------ITR 88 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCC-C-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSC----------CCH
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCC-CCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhh----------hHH
Confidence 4589999999999999999999976532 223344455555556667664 778999999654421 123
Q ss_pred HHHhhccEEEEEeccchhh----------HH----hcCCcEEEEEeCccCCCCcCch-HHHHHHHHhcHHHHHhhCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEVR----------AV----EEGRGLVVIVNKMDLLSGRQNS-ALYKRVKEAVPQEIQTVIPQVT 465 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~----------~~----~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 465 (607)
.+++.+|++|+|+|+++.. .. ..++|+++|+||+|+.+..... +....+ .+ ..
T Consensus 89 ~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~--------~~----~~ 156 (191)
T 2a5j_A 89 SYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAF--------AR----EH 156 (191)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHH--------HH----HH
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHH--------HH----Hc
Confidence 5677899999999998751 11 1378999999999997542211 111111 11 12
Q ss_pred CCCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 466 GIPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 466 ~~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
+++++++||++|.|++++|+.|.+.+.+
T Consensus 157 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 184 (191)
T 2a5j_A 157 GLIFMETSAKTACNVEEAFINTAKEIYR 184 (191)
T ss_dssp TCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 5689999999999999999999876643
No 184
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.82 E-value=2.2e-20 Score=177.99 Aligned_cols=161 Identities=13% Similarity=0.004 Sum_probs=111.5
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeecc-------CCCCceeeeeEEE-----EeeeCCeeEEEecCCCCccccCch
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYN-------TPDDHVTRDIREG-----LAKLGDLRFKVLDSAGLETEATSG 187 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~-------~~~~~~T~~~~~~-----~~~~~~~~~~liDTpG~~~~~~~~ 187 (607)
..+|+|+|.+|||||||+|.+.+........ ... .|....+. .+......+.+|||||++
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~------ 85 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDE--RTLFFDFLPLDIGEVKGFKTRFHLYTVPGQV------ 85 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSC--EEEEEEECCSSCCCSSSCEEEEEEEECCSCC------
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccc--cceeeeecccccccccCCceEEEEEeCCChH------
Confidence 4689999999999999998887653221100 011 12222111 112234579999999988
Q ss_pred hHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHH----HHHHHHHhh---CCCCcEEEEecCCCcccCCcCcHHHHHHH
Q 007334 188 SILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDL----EVGKWLRKH---APQIKPIVAMNKCESLHNGTGSLAGAAAE 260 (607)
Q Consensus 188 ~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~----~~~~~l~~~---~~~~p~ilV~NK~D~~~~~~~~~~~~~~~ 260 (607)
++......++..+|++|+|+|++++....+. .+..|+... ..+.|+++|+||+|+... ...++....
T Consensus 86 ----~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~ 159 (198)
T 3t1o_A 86 ----FYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDA--LPVEMVRAV 159 (198)
T ss_dssp ----SCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTC--CCHHHHHHH
T ss_pred ----HHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccc--cCHHHHHHH
Confidence 2334556688999999999999966544443 345666653 257899999999999764 334444445
Q ss_pred HHhcCCCCcEEeecCCCCChHHHHHHhccchHHH
Q 007334 261 SLMLGFGDPIAISAETGLGMTELYEALRPSVEDY 294 (607)
Q Consensus 261 ~~~~~~~~~i~iSA~~g~gi~eL~~~i~~~l~~~ 294 (607)
+...+..+++++||++|.|++++++.|.+.+.+.
T Consensus 160 ~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~ 193 (198)
T 3t1o_A 160 VDPEGKFPVLEAVATEGKGVFETLKEVSRLVLAR 193 (198)
T ss_dssp HCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred HHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHH
Confidence 5555655789999999999999999998877553
No 185
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.82 E-value=5.3e-20 Score=173.65 Aligned_cols=152 Identities=19% Similarity=0.141 Sum_probs=107.1
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
..+|+++|.+|||||||+|+|++..........+ . ....+.+++..+.+|||||+.. +...+..
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~--~----~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~ 84 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIG--S----NVEEIVINNTRFLMWDIGGQES----------LRSSWNT 84 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSS--S----SCEEEEETTEEEEEEEESSSGG----------GTCGGGG
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCc--e----eeEEEEECCEEEEEEECCCCHh----------HHHHHHH
Confidence 4789999999999999999999887644443333 2 2234556789999999999973 2233456
Q ss_pred HhhccCEEEEEEecCCCCCHhHH-H-HHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHH-----hcCCCCcEE
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDL-E-VGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESL-----MLGFGDPIA 271 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~-~-~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~-----~~~~~~~i~ 271 (607)
++..+|++++|+|++++.+..+. . +...+... ..+.|+++|+||+|+..... ..+...... ..++ .+++
T Consensus 85 ~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~-~~~~ 161 (181)
T 2h17_A 85 YYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT--VAEISQFLKLTSIKDHQW-HIQA 161 (181)
T ss_dssp GGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCE-EEEE
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCC--HHHHHHHhCcccccCCce-EEEE
Confidence 78899999999999998666652 1 22222221 25789999999999976422 122211111 1122 5799
Q ss_pred eecCCCCChHHHHHHhccc
Q 007334 272 ISAETGLGMTELYEALRPS 290 (607)
Q Consensus 272 iSA~~g~gi~eL~~~i~~~ 290 (607)
+||++|.|++++++.|.+.
T Consensus 162 ~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 162 CCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp CBTTTTBTHHHHHHHHHTC
T ss_pred ccCCCCcCHHHHHHHHHhh
Confidence 9999999999999998754
No 186
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.81 E-value=7.4e-20 Score=173.83 Aligned_cols=155 Identities=15% Similarity=0.056 Sum_probs=108.6
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
..+|+|+|.+|||||||+|+|++..... ... .|....+..+...+..+.+|||||+. ++...+..
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~----~t~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~~~ 86 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQFNE-DMI----PTVGFNMRKITKGNVTIKLWDIGGQP----------RFRSMWER 86 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCC-SCC----CCCSEEEEEEEETTEEEEEEEECCSH----------HHHTTHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCCCCC-ccC----CCCceeEEEEEeCCEEEEEEECCCCH----------hHHHHHHH
Confidence 4689999999999999999999876531 111 23333344566788999999999987 45556677
Q ss_pred HhhccCEEEEEEecCCCCCHhHH--HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHh-----cCCCCcEE
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLM-----LGFGDPIA 271 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~-----~~~~~~i~ 271 (607)
++..+|++++|+|++++.+.... .+...+... ..+.|+++|+||+|+..... ..+....... .+. .+++
T Consensus 87 ~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~-~~~~ 163 (188)
T 1zd9_A 87 YCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALD--EKELIEKMNLSAIQDREI-CCYS 163 (188)
T ss_dssp HHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCE-EEEE
T ss_pred HHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCC--HHHHHHHhChhhhccCCe-eEEE
Confidence 88999999999999986555442 122222221 24789999999999976422 1221111111 111 5689
Q ss_pred eecCCCCChHHHHHHhccchH
Q 007334 272 ISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 272 iSA~~g~gi~eL~~~i~~~l~ 292 (607)
+||++|.|+++++++|.+.+.
T Consensus 164 ~SA~~g~gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 164 ISCKEKDNIDITLQWLIQHSK 184 (188)
T ss_dssp CCTTTCTTHHHHHHHHHHTCC
T ss_pred EECCCCCCHHHHHHHHHHHHH
Confidence 999999999999999987664
No 187
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.81 E-value=5.9e-20 Score=174.39 Aligned_cols=149 Identities=20% Similarity=0.165 Sum_probs=103.5
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeE-EEEEEEcC-----------eEEEEEecCCCcccccccC
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSV-RVHFEYQG-----------RTVYLVDTAGWLQREKEKG 390 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~-~~~~~~~~-----------~~~~liDTpG~~~~~~~~~ 390 (607)
..++|+++|.+|||||||+|+|++... .....+.++.+.. ...+.+++ ..+.||||||+.+..
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---- 84 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKF-NSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFR---- 84 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC-CCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGH----
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCC-CcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHH----
Confidence 358999999999999999999997642 2233344444443 33444553 478899999964331
Q ss_pred cchhHHHHHHHHHhhccEEEEEeccchhh----------HHh-----cCCcEEEEEeCccCCCCcCch-HHHHHHHHhcH
Q 007334 391 PASLSVMQSRKNLMRAHVVALVLDAEEVR----------AVE-----EGRGLVVIVNKMDLLSGRQNS-ALYKRVKEAVP 454 (607)
Q Consensus 391 ~~~~~~~~~~~~i~~ad~~llViD~~~~~----------~~~-----~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~ 454 (607)
.....+++.+|++|+|+|+++.. ... .++|+++|+||+|+.+..... +....+
T Consensus 85 ------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~----- 153 (195)
T 3bc1_A 85 ------SLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEAREL----- 153 (195)
T ss_dssp ------HHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHH-----
T ss_pred ------HHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHH-----
Confidence 23456778999999999998751 111 478999999999997542211 111111
Q ss_pred HHHHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHHHHHH
Q 007334 455 QEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQKW 494 (607)
Q Consensus 455 ~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~ 494 (607)
.+. .+++++++||++|.|++++|+.|.+.+.+.
T Consensus 154 ---~~~----~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 186 (195)
T 3bc1_A 154 ---AEK----YGIPYFETSAANGTNISHAIEMLLDLIMKR 186 (195)
T ss_dssp ---HHH----HTCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred ---HHH----cCCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 111 146899999999999999999998876543
No 188
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.81 E-value=3.2e-20 Score=172.21 Aligned_cols=144 Identities=16% Similarity=0.126 Sum_probs=98.2
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCcee-ecCCCCceeeeEEEEEEEc--CeEEEEEecCCCcccccccCcchhHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVL-VGPEAGLTRDSVRVHFEYQ--GRTVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~-~~~~~gtT~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
.++|+++|.+|||||||+|+|++..... ..+..+++.. ...+.++ +..+.+|||||+.+.. ....
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~D~~G~~~~~----------~~~~ 73 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFL--TQTVCLDDTTVKFEIWDTAGQERYH----------SLAP 73 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEE--EEEEEETTEEEEEEEEEECCSGGGG----------GGHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEE--EEEEEECCEEEEEEEEeCCCcHHhh----------hhhH
Confidence 5899999999999999999999764322 2233343333 3334444 4578899999965432 1134
Q ss_pred HHHhhccEEEEEeccchh-----------hHH---hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEV-----------RAV---EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~-----------~~~---~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
.++..+|++++|+|+++. ... ..+.|+++|+||+|+.+..... .+... ++.. ..+
T Consensus 74 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~--~~~~~-----~~~~----~~~ 142 (170)
T 1r2q_A 74 MYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVD--FQEAQ-----SYAD----DNS 142 (170)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC--HHHHH-----HHHH----HTT
T ss_pred HhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccC--HHHHH-----HHHH----HcC
Confidence 567889999999999875 011 2378999999999997542211 11111 1111 135
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
++++++||++|.|++++|+.|.+.
T Consensus 143 ~~~~~~Sa~~g~gi~~l~~~i~~~ 166 (170)
T 1r2q_A 143 LLFMETSAKTSMNVNEIFMAIAKK 166 (170)
T ss_dssp CEEEECCTTTCTTHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHH
Confidence 789999999999999999988764
No 189
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.81 E-value=1.2e-20 Score=184.14 Aligned_cols=159 Identities=19% Similarity=0.197 Sum_probs=115.0
Q ss_pred CCEEEEecCCCCchhHHHHHhhccc-eeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRR-EALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~-~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
..+|+++|.+|||||||+|+|+... ........+ +|...........+..+.+|||||+.. +.....
T Consensus 15 ~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~ 82 (221)
T 3gj0_A 15 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG--VEVHPLVFHTNRGPIKFNVWDTAGQEK----------FGGLRD 82 (221)
T ss_dssp EEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTT--EEEEEEEEEETTEEEEEEEEEECSGGG----------TSCCCH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccc--eeEEEEEEEECCEEEEEEEEeCCChHH----------HhHHHH
Confidence 4689999999999999999966543 334445555 677666655555567899999999873 223344
Q ss_pred HHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETG 277 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g 277 (607)
.++..+|++++|+|++++.+..+. .+...+.....+.|+++|+||+|+....... .........+. .++++||++|
T Consensus 83 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~--~~~~~~~~~~~-~~~~~Sa~~~ 159 (221)
T 3gj0_A 83 GYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKA--KSIVFHRKKNL-QYYDISAKSN 159 (221)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCG--GGCCHHHHHTC-EEEECBGGGT
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccH--HHHHHHHHcCC-EEEEEeCCCC
Confidence 577899999999999986655542 2334444445588999999999997654322 22223334455 7899999999
Q ss_pred CChHHHHHHhccchHH
Q 007334 278 LGMTELYEALRPSVED 293 (607)
Q Consensus 278 ~gi~eL~~~i~~~l~~ 293 (607)
.|++++++.|.+.+..
T Consensus 160 ~gi~~l~~~l~~~l~~ 175 (221)
T 3gj0_A 160 YNFEKPFLWLARKLIG 175 (221)
T ss_dssp BTTTHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999877643
No 190
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.81 E-value=4.4e-20 Score=175.93 Aligned_cols=153 Identities=16% Similarity=0.139 Sum_probs=106.7
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
..+|+++|.+|||||||+|+|++....... .|.......+.+++..+.+|||||+... ......
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~~~~~~------~t~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~ 86 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDRLATLQ------PTWHPTSEELAIGNIKFTTFDLGGHIQA----------RRLWKD 86 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSCCCCCC------CCCSCEEEEEEETTEEEEEEECCCSGGG----------TTSGGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCccc------cCCCCCeEEEEECCEEEEEEECCCCHHH----------HHHHHH
Confidence 358999999999999999999987654322 2333345667778899999999999732 223345
Q ss_pred HhhccCEEEEEEecCCCCCHhHHH-HH-HHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhc-----------C
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDLE-VG-KWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLML-----------G 265 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~~-~~-~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~-----------~ 265 (607)
++..+|++++|+|++++.+..+.. +. ..++.. ..+.|+++|+||+|+... ...++....+... .
T Consensus 87 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (190)
T 1m2o_B 87 YFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA--VSEAELRSALGLLNTTGSQRIEGQR 164 (190)
T ss_dssp GCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--CCHHHHHHHTTCSSCCC---CCSSC
T ss_pred HHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCC--CCHHHHHHHhCCccccccccccccc
Confidence 678999999999999876655422 22 222211 247899999999999762 2223322222111 1
Q ss_pred CCCcEEeecCCCCChHHHHHHhccc
Q 007334 266 FGDPIAISAETGLGMTELYEALRPS 290 (607)
Q Consensus 266 ~~~~i~iSA~~g~gi~eL~~~i~~~ 290 (607)
..+++++||++|.|++++++.|.+.
T Consensus 165 ~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 165 PVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp CEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred eEEEEEeECCcCCCHHHHHHHHHhh
Confidence 1157999999999999999998754
No 191
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.81 E-value=8.4e-21 Score=204.56 Aligned_cols=155 Identities=32% Similarity=0.407 Sum_probs=110.7
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
.+++|+++|+||||||||+|+|++.+..++++.+|||+|.....+.++|..+.||||||+.+.. ...+.+.+.++..+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~--~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETS--DQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC----------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccch--hHHHHHHHHHHhhh
Confidence 3579999999999999999999998778899999999999888888999999999999986542 22334444566677
Q ss_pred HhhccEEEEEeccchh--------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEccc
Q 007334 403 LMRAHVVALVLDAEEV--------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSA 474 (607)
Q Consensus 403 i~~ad~~llViD~~~~--------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA 474 (607)
+..+|++|+|+|++++ ......+|+++|+||+|+.+..... .. + ......+++++||
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~~piivV~NK~Dl~~~~~~~------------~~-~--~~~~~~~~i~iSA 365 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGDQEIYEQVKHRPLILVMNKIDLVEKQLIT------------SL-E--YPENITQIVHTAA 365 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHHHHHHHHHTTSCEEEEEECTTSSCGGGST------------TC-C--CCTTCCCEEEEBT
T ss_pred hhcCCEEEEEeccCCCCCHHHHHHHHhccCCcEEEEEECCCCCcchhhH------------HH-H--HhccCCcEEEEEC
Confidence 8889999999999875 1112458999999999998653211 00 0 1113568999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q 007334 475 LEGRGRIAVMHQVIDTYQKW 494 (607)
Q Consensus 475 ~~g~gv~~l~~~i~~~~~~~ 494 (607)
++|.|++++++.+.+.+...
T Consensus 366 ktg~Gi~eL~~~i~~~~~~~ 385 (462)
T 3geh_A 366 AQKQGIDSLETAILEIVQTG 385 (462)
T ss_dssp TTTBSHHHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999877543
No 192
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.81 E-value=1.5e-19 Score=167.56 Aligned_cols=148 Identities=18% Similarity=0.210 Sum_probs=100.5
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.++|+++|.+|||||||+|+|++... .....+.++.+.....+.+++. .+.+|||||..+.. .....
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~----------~~~~~ 71 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDF-AENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFA----------SLAPX 71 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC-CTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG----------GGHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhh----------hhhhh
Confidence 37899999999999999999997642 2223344444444455556554 77899999965432 11346
Q ss_pred HHhhccEEEEEeccchhh----------HH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEVR----------AV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~~----------~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
+++.+|++++|+|+++.. .. ..+.|+++|+||+|+.+.....+....... ++.+ ..++
T Consensus 72 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~----~~~~----~~~~ 143 (170)
T 1ek0_A 72 YYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGE----KLAE----EKGL 143 (170)
T ss_dssp HHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHH----HHHH----HHTC
T ss_pred hhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHH----HHHH----HcCC
Confidence 778999999999998760 11 247899999999999754211111011011 1111 1256
Q ss_pred CEEEcccCCCCCHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
+++++||++|.|++++|+.+.+.
T Consensus 144 ~~~~~Sa~~~~gi~~l~~~l~~~ 166 (170)
T 1ek0_A 144 LFFETSAKTGENVNDVFLGIGEK 166 (170)
T ss_dssp EEEECCTTTCTTHHHHHHHHHTT
T ss_pred EEEEEeCCCCCCHHHHHHHHHHH
Confidence 89999999999999999988753
No 193
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.81 E-value=3.1e-20 Score=178.08 Aligned_cols=146 Identities=18% Similarity=0.222 Sum_probs=95.0
Q ss_pred cCCceEEEEcCCCCchhHHHHHhhcCCce-eecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHH
Q 007334 322 KLPLQLAIVGRPNVGKSTLLNALLQEDRV-LVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQ 398 (607)
Q Consensus 322 ~~~~~v~ivG~~nvGKSslin~l~~~~~~-~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~ 398 (607)
+..++|+++|.+|||||||+|+|++.... ...+..|++ .....+.+++ ..+.||||||..+.. ..
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~l~i~Dt~G~~~~~----------~~ 93 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVD--FQMKTLIVDGERTVLQLWDTAGQERFR----------SI 93 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC------------CEEEEEEETTEEEEEEEEECTTCTTCH----------HH
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccce--eEEEEEEECCEEEEEEEEECCCCcchh----------hh
Confidence 34689999999999999999999976532 233333433 3334455555 468899999964331 22
Q ss_pred HHHHHhhccEEEEEeccchhh----------HH----hcCCcEEEEEeCccCCCC------cCc-hHHHHHHHHhcHHHH
Q 007334 399 SRKNLMRAHVVALVLDAEEVR----------AV----EEGRGLVVIVNKMDLLSG------RQN-SALYKRVKEAVPQEI 457 (607)
Q Consensus 399 ~~~~i~~ad~~llViD~~~~~----------~~----~~~~p~ivv~NK~Dl~~~------~~~-~~~~~~~~~~~~~~~ 457 (607)
...+++.+|++|+|+|+++.. .+ ..++|+++|+||+|+.+. ... .+... .+
T Consensus 94 ~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~--------~~ 165 (199)
T 2p5s_A 94 AKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGE--------KL 165 (199)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHH--------HH
T ss_pred HHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHH--------HH
Confidence 346778899999999998750 11 137899999999998631 111 11111 11
Q ss_pred HhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 458 QTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 458 ~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
.. ..+++++++||++|.|++++|+.+.+.+
T Consensus 166 ~~----~~~~~~~~~SA~~g~gv~el~~~l~~~i 195 (199)
T 2p5s_A 166 AM----TYGALFCETSAKDGSNIVEAVLHLAREV 195 (199)
T ss_dssp HH----HHTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HH----HcCCeEEEeeCCCCCCHHHHHHHHHHHH
Confidence 11 1256899999999999999999988765
No 194
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.81 E-value=1.5e-19 Score=171.76 Aligned_cols=150 Identities=17% Similarity=0.174 Sum_probs=104.5
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
..++|+++|.+|||||||+|+|++....... ...|.+.....+.+++..+.||||||..+... ....+
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~~~~~ 87 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQN--ILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRN----------LWEHY 87 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSS--CCCCSSEEEEEEECSSCEEEEEEECCSTTTGG----------GGGGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCC--cCCccceeEEEEEECCEEEEEEECCCCHHHHH----------HHHHH
Confidence 4689999999999999999999977522222 22344455566777889999999999755421 11245
Q ss_pred HhhccEEEEEeccchh-----------hHHh------cCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHH-hhCCCC
Q 007334 403 LMRAHVVALVLDAEEV-----------RAVE------EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQ-TVIPQV 464 (607)
Q Consensus 403 i~~ad~~llViD~~~~-----------~~~~------~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 464 (607)
+..+|++|+|+|+++. .... .++|+++|+||+|+.+.....+ +. ..+. ..+. .
T Consensus 88 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~----~~----~~~~~~~~~-~ 158 (190)
T 2h57_A 88 YKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVK----VS----QLLCLENIK-D 158 (190)
T ss_dssp GGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHH----HH----HHHTGGGCC-S
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHH----HH----HHhChhhcc-C
Confidence 6789999999999875 1111 4789999999999976432211 11 1111 1111 2
Q ss_pred CCCCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 465 TGIPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 465 ~~~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
.+++++++||++|.|++++|+.|.+.+.+
T Consensus 159 ~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 159 KPWHICASDAIKGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp SCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred CceEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 35689999999999999999999886543
No 195
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.81 E-value=1.7e-20 Score=174.32 Aligned_cols=147 Identities=18% Similarity=0.200 Sum_probs=101.0
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.++|+++|.+|||||||+|+|++.. ......++++.+.....+.+++. .+.+|||||..+... ....
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----------~~~~ 74 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENK-FNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHA----------LGPI 74 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCC-CCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-----------------CC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC-CCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhh----------hHHH
Confidence 5899999999999999999999764 33334555555655556666654 677999999654321 1123
Q ss_pred HHhhccEEEEEeccchh--------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEV--------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~--------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
+++.+|++++|+|+++. .....++|+++|+||+|+.+..... .+... ++.+. .++
T Consensus 75 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~-----~~~~~----~~~ 143 (170)
T 1z08_A 75 YYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVS--IQEAE-----SYAES----VGA 143 (170)
T ss_dssp SSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSC--HHHHH-----HHHHH----TTC
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccC--HHHHH-----HHHHH----cCC
Confidence 45689999999999875 1112578999999999997643211 11111 11111 257
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
+++++||++|.|++++|+.+.+.+.
T Consensus 144 ~~~~~Sa~~~~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 144 KHYHTSAKQNKGIEELFLDLCKRMI 168 (170)
T ss_dssp EEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred eEEEecCCCCCCHHHHHHHHHHHHh
Confidence 8999999999999999999987653
No 196
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.81 E-value=4.5e-19 Score=168.32 Aligned_cols=147 Identities=22% Similarity=0.299 Sum_probs=102.3
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.++|+++|.+|||||||+|+|++.. ....+.+++.+.....+.+++. .+.||||||..+.. .....
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~~~ 88 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS----------AMRDQ 88 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSS--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC--------------------
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCC--CccccCCccceEEEEEEEECCEEEEEEEEECCChHHHH----------HHHHH
Confidence 4899999999999999999999764 3345566666666666777765 47899999964431 11235
Q ss_pred HHhhccEEEEEeccchhh----------H---Hh--cCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEVR----------A---VE--EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~~----------~---~~--~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
++..+|++++|+|+++.. . .. .++|+++|+||+|+.+.....+....+. .. .+
T Consensus 89 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~----~~--------~~ 156 (190)
T 3con_A 89 YMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELA----KS--------YG 156 (190)
T ss_dssp -CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHH----HH--------HT
T ss_pred hhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHH----HH--------cC
Confidence 677899999999998751 1 11 3789999999999976322222222111 11 14
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTYQKW 494 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~~~~ 494 (607)
++++++||++|.|++++++.|.+.+.+.
T Consensus 157 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 184 (190)
T 3con_A 157 IPFIETSAKTRQGVEDAFYTLVREIRQY 184 (190)
T ss_dssp CCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 6899999999999999999998877654
No 197
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.81 E-value=3.7e-20 Score=177.84 Aligned_cols=149 Identities=19% Similarity=0.177 Sum_probs=100.4
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++.. ......++++.+.....+.+++ ..+.||||||..+... ...
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~----------~~~ 92 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENK-FKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRS----------VTR 92 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-------------CCEEEEEEEETTEEEEEEEECCTTHHHHSC----------CCH
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCC-CCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHH----------HHH
Confidence 45899999999999999999999764 3334455556666666677777 5788999999643321 123
Q ss_pred HHHhhccEEEEEeccchhh-----------H---HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEVR-----------A---VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~-----------~---~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
.+++.+|++|+|+|+++.. . ...++|+++|+||+|+.+...... .... .+.+ ..+
T Consensus 93 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~--~~~~-----~~~~----~~~ 161 (200)
T 2o52_A 93 SYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTF--LEAS-----RFAQ----ENE 161 (200)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCH--HHHH-----HHHH----HTT
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCH--HHHH-----HHHH----HcC
Confidence 5678899999999998751 1 124789999999999975432211 1110 1111 125
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
++++++||++|.|++++|+.+.+.+.+
T Consensus 162 ~~~~~~SA~~g~gi~~l~~~l~~~i~~ 188 (200)
T 2o52_A 162 LMFLETSALTGENVEEAFLKCARTILN 188 (200)
T ss_dssp CEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999999887643
No 198
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.81 E-value=1.1e-20 Score=179.91 Aligned_cols=150 Identities=17% Similarity=0.142 Sum_probs=103.3
Q ss_pred cCCceEEEEcCCCCchhHHHHHhhcCCce-eecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHH
Q 007334 322 KLPLQLAIVGRPNVGKSTLLNALLQEDRV-LVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 322 ~~~~~v~ivG~~nvGKSslin~l~~~~~~-~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
+..+||+++|.+|||||||+|+|++.... ...+..|++.......+...+..+.||||||..+. . ....
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~---------~-~~~~ 90 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERY---------R-TITT 90 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHC---------H-HHHH
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHH---------H-HHHH
Confidence 34689999999999999999999976422 22233344444333333334568999999994322 1 2245
Q ss_pred HHHhhccEEEEEeccchhh-----------HH---hcCCcEEEEEeCccCCCCcCch-HHHHHHHHhcHHHHHhhCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEVR-----------AV---EEGRGLVVIVNKMDLLSGRQNS-ALYKRVKEAVPQEIQTVIPQVT 465 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~-----------~~---~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 465 (607)
.+++.+|++|+|+|+++.. .. ..++|+++|+||+|+.+..... +.... +.+ ..
T Consensus 91 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~--------~~~----~~ 158 (191)
T 3dz8_A 91 AYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQL--------LAE----QL 158 (191)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHH--------HHH----HH
T ss_pred HHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHH--------HHH----Hc
Confidence 6788999999999998751 11 1478999999999996543221 11111 111 12
Q ss_pred CCCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 466 GIPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 466 ~~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
+++++++||++|.|++++|+.+.+.+.+
T Consensus 159 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 186 (191)
T 3dz8_A 159 GFDFFEASAKENISVRQAFERLVDAICD 186 (191)
T ss_dssp TCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5689999999999999999999887654
No 199
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.81 E-value=8.6e-19 Score=161.49 Aligned_cols=144 Identities=24% Similarity=0.290 Sum_probs=102.7
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
++|+++|.+|||||||+|+|++.. ......+++.+.....+..++. .+.+|||||..+.. .....+
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~----------~~~~~~ 71 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNH--FVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS----------AMRDQY 71 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCC----------HHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc--CccccCCccceEEEEEEEECCEEEEEEEEECCCchhhh----------HHHHHh
Confidence 689999999999999999999763 2334455555555556666665 46789999964431 122356
Q ss_pred HhhccEEEEEeccchhh-----------H--Hh--cCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEVR-----------A--VE--EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~~-----------~--~~--~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
+..+|++++|+|+++.. . .. .++|+++|+||+|+.+.....+....+. .. .++
T Consensus 72 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~----~~--------~~~ 139 (166)
T 2ce2_X 72 MRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLA----RS--------YGI 139 (166)
T ss_dssp HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHH----HH--------HTC
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHH----HH--------cCC
Confidence 77899999999998751 0 11 2799999999999986432222222211 11 146
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
+++++||++|.|++++++.+.+.+.
T Consensus 140 ~~~~~Sa~~~~gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 140 PYIETSAKTRQGVEDAFYTLVREIR 164 (166)
T ss_dssp CEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred eEEEecCCCCCCHHHHHHHHHHHHH
Confidence 8999999999999999999987653
No 200
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.81 E-value=6.4e-20 Score=169.92 Aligned_cols=145 Identities=17% Similarity=0.174 Sum_probs=103.8
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.++|+++|.+|||||||+|+|++.. ......++++.+.....+.+++. .+.||||||..+... ....
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~~~~ 73 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGI-FTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDA----------ITKA 73 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCC-CCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTC----------CCHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC-CCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHH----------HHHH
Confidence 5899999999999999999999764 33334455556666666677664 778999999654321 1235
Q ss_pred HHhhccEEEEEeccchhh-------------HHhcCCcEEEEEeCccCCCCcCc-hHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEVR-------------AVEEGRGLVVIVNKMDLLSGRQN-SALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~~-------------~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
++..+|++++|+|+++.. ....+.|+++|+||+|+.+.... .+....+ .+. .++
T Consensus 74 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~--------~~~----~~~ 141 (168)
T 1z2a_A 74 YYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGL--------AKR----LKL 141 (168)
T ss_dssp HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHH--------HHH----HTC
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHH--------HHH----cCC
Confidence 677899999999998751 11148999999999999754321 1111111 111 156
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+++++||++|.|++++++.+.+.+
T Consensus 142 ~~~~~Sa~~~~~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 142 RFYRTSVKEDLNVSEVFKYLAEKH 165 (168)
T ss_dssp EEEECBTTTTBSSHHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHHHH
Confidence 899999999999999999988765
No 201
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.81 E-value=3.4e-19 Score=170.84 Aligned_cols=161 Identities=16% Similarity=0.170 Sum_probs=102.7
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++.. ....+++|+.+.....+.+++. .+.||||||+.+.... ..
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------~~ 86 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNG--YPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKL----------RP 86 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC----------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSS----------GG
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHH----------hH
Confidence 46899999999999999999999764 4456667777777777777776 5569999997654211 12
Q ss_pred HHHhhccEEEEEeccchhh--------H---H---hcCCcEEEEEeCccCCCCcCchHHHHHH-HHhcHHHHHhhCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEVR--------A---V---EEGRGLVVIVNKMDLLSGRQNSALYKRV-KEAVPQEIQTVIPQVT 465 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~--------~---~---~~~~p~ivv~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 465 (607)
.++..+|++|+|+|+++.. . . ..++|+++|+||+|+.+.......+... .+.+..+....++...
T Consensus 87 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 166 (201)
T 2q3h_A 87 LCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEI 166 (201)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH
T ss_pred hhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhc
Confidence 3567899999999998751 0 1 1389999999999997531100000000 0000000001111111
Q ss_pred C-CCEEEcccCCCCCHHHHHHHHHHHHHHHh
Q 007334 466 G-IPVVFTSALEGRGRIAVMHQVIDTYQKWC 495 (607)
Q Consensus 466 ~-~~~v~iSA~~g~gv~~l~~~i~~~~~~~~ 495 (607)
+ .+++++||++|.|++++|+.+.+.+.+..
T Consensus 167 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 197 (201)
T 2q3h_A 167 KAASYIECSALTQKNLKEVFDAAIVAGIQYS 197 (201)
T ss_dssp TCSEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEecCCCCCHHHHHHHHHHHHhccc
Confidence 3 38999999999999999999988765443
No 202
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.81 E-value=8.8e-20 Score=173.81 Aligned_cols=148 Identities=16% Similarity=0.185 Sum_probs=101.6
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
.++|+++|.+|||||||+|+|++.....+.++.+. ....+.+++..+.+|||||+.+.... ...++
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~----~~~~~~~~~~~~~i~Dt~G~~~~~~~----------~~~~~ 88 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHP----TSEELAIGNIKFTTFDLGGHIQARRL----------WKDYF 88 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSC----EEEEEEETTEEEEEEECCCSGGGTTS----------GGGGC
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCC----CeEEEEECCEEEEEEECCCCHHHHHH----------HHHHH
Confidence 47999999999999999999998764433333333 34567788999999999997654211 12355
Q ss_pred hhccEEEEEeccchh-----------hH----HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHH---HhhCCCCC
Q 007334 404 MRAHVVALVLDAEEV-----------RA----VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEI---QTVIPQVT 465 (607)
Q Consensus 404 ~~ad~~llViD~~~~-----------~~----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 465 (607)
+.+|++++|+|++++ .. ...++|+++|+||+|+.+.... +.+.+.+.... ...++...
T Consensus 89 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 164 (190)
T 1m2o_B 89 PEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSE----AELRSALGLLNTTGSQRIEGQR 164 (190)
T ss_dssp TTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCH----HHHHHHTTCSSCCC---CCSSC
T ss_pred hcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCH----HHHHHHhCCccccccccccccc
Confidence 689999999999875 11 1257899999999999763221 11111110000 00012234
Q ss_pred CCCEEEcccCCCCCHHHHHHHHHH
Q 007334 466 GIPVVFTSALEGRGRIAVMHQVID 489 (607)
Q Consensus 466 ~~~~v~iSA~~g~gv~~l~~~i~~ 489 (607)
+++++++||++|.|++++|+.+.+
T Consensus 165 ~~~~~~~Sa~~g~gi~~l~~~l~~ 188 (190)
T 1m2o_B 165 PVEVFMCSVVMRNGYLEAFQWLSQ 188 (190)
T ss_dssp CEEEEECBTTTTBSHHHHHHHHHT
T ss_pred eEEEEEeECCcCCCHHHHHHHHHh
Confidence 578999999999999999998864
No 203
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.81 E-value=7.8e-20 Score=172.28 Aligned_cols=155 Identities=19% Similarity=0.148 Sum_probs=105.8
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
...+|+++|.+|||||||+|+|++..........+ .....+.+.+..+.+|||||+... ...+.
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~------~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~ 80 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEVVTTKPTIG------FNVETLSYKNLKLNVWDLGGQTSI----------RPYWR 80 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTT------CCEEEEEETTEEEEEEEEC----C----------CTTGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCc------cceEEEEECCEEEEEEECCCCHhH----------HHHHH
Confidence 35799999999999999999999876643333332 233445567899999999999732 22334
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHHHHHHHHhh-----CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCC----CCc
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH-----APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGF----GDP 269 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~-----~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~----~~~ 269 (607)
.++..+|++++|+|++++.+..+ +..|+... ..+.|+++|+||+|+..... ..+.......... .++
T Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~ 156 (183)
T 1moz_A 81 CYYADTAAVIFVVDSTDKDRMST--ASKELHLMLQEEELQDAALLVFANKQDQPGALS--ASEVSKELNLVELKDRSWSI 156 (183)
T ss_dssp GTTTTEEEEEEEEETTCTTTHHH--HHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCC--HHHHHHHTTTTTCCSSCEEE
T ss_pred HHhccCCEEEEEEECCCHHHHHH--HHHHHHHHHcChhhCCCeEEEEEECCCCCCCCC--HHHHHHHhCcccccCCceEE
Confidence 56789999999999998866654 22333332 35789999999999976422 1222211111111 157
Q ss_pred EEeecCCCCChHHHHHHhccchHH
Q 007334 270 IAISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 270 i~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
+++||++|.|+++++++|.+.+.+
T Consensus 157 ~~~Sa~~~~gi~~l~~~l~~~~~~ 180 (183)
T 1moz_A 157 VASSAIKGEGITEGLDWLIDVIKE 180 (183)
T ss_dssp EEEBGGGTBTHHHHHHHHHHHHHH
T ss_pred EEccCCCCcCHHHHHHHHHHHHHh
Confidence 999999999999999999887654
No 204
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.81 E-value=4.8e-20 Score=177.10 Aligned_cols=146 Identities=16% Similarity=0.150 Sum_probs=101.4
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.++|+++|.+|||||||+|+|++.... ....+.++.+.....+..++ ..+.||||||+.+.. .....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~~~ 76 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFT-PAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYR----------TITTA 76 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCC-SCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGH----------HHHHT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCC-CCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhc----------chHHH
Confidence 489999999999999999999976432 22223333333334445554 478899999964331 22345
Q ss_pred HHhhccEEEEEeccchhh----------HH-h---cCCcEEEEEeCccCCCCcCch-HHHHHHHHhcHHHHHhhCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEVR----------AV-E---EGRGLVVIVNKMDLLSGRQNS-ALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~~----------~~-~---~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
+++.+|++|+|+|+++.. .. . .++|+++|+||+|+.+..... +....+ .+. .+
T Consensus 77 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~--------~~~----~~ 144 (203)
T 1zbd_A 77 YYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQL--------ADH----LG 144 (203)
T ss_dssp TGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHH--------HHH----HT
T ss_pred hhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHH--------HHH----CC
Confidence 778899999999998751 11 1 478999999999997643221 111111 111 14
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
++++++||++|.|++++|+.+.+.+.
T Consensus 145 ~~~~~~Sa~~~~gi~~l~~~l~~~i~ 170 (203)
T 1zbd_A 145 FEFFEASAKDNINVKQTFERLVDVIC 170 (203)
T ss_dssp CEEEECBTTTTBSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999987654
No 205
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.81 E-value=4.6e-20 Score=175.26 Aligned_cols=148 Identities=18% Similarity=0.148 Sum_probs=101.1
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++.... ....+..+.+.....+..++ ..+.||||||..+.... ..
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----------~~ 89 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFT-PAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTI----------TT 89 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC-CSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCS----------GG
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCC-CCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhh----------HH
Confidence 3589999999999999999999987532 22223333333333444444 47889999997554211 12
Q ss_pred HHHhhccEEEEEeccchh-----------hHHh---cCCcEEEEEeCccCCCCcCch-HHHHHHHHhcHHHHHhhCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEV-----------RAVE---EGRGLVVIVNKMDLLSGRQNS-ALYKRVKEAVPQEIQTVIPQVT 465 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~-----------~~~~---~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 465 (607)
.++..+|++|+|+|+++. .... .++|+++|+||+|+.+..... +....+ .+. .
T Consensus 90 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~--------~~~----~ 157 (189)
T 2gf9_A 90 AYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRL--------ADD----L 157 (189)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHH--------HHH----H
T ss_pred HhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHH--------HHH----c
Confidence 456789999999999875 1111 378999999999997543221 111111 111 1
Q ss_pred CCCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 466 GIPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 466 ~~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
+++++++||++|.|++++|+.+.+.+.+
T Consensus 158 ~~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 185 (189)
T 2gf9_A 158 GFEFFEASAKENINVKQVFERLVDVICE 185 (189)
T ss_dssp TCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999887643
No 206
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.81 E-value=4.6e-20 Score=175.40 Aligned_cols=156 Identities=21% Similarity=0.164 Sum_probs=109.5
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
..+|+++|.+|||||||+|+|++....... .. .|.+.....+.+++..+.+|||||+.. +...+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~--~t~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~~ 86 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSNAQSQN--IL--PTIGFSIEKFKSSSLSFTVFDMSGQGR----------YRNLWEH 86 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGGGCCSS--CC--CCSSEEEEEEECSSCEEEEEEECCSTT----------TGGGGGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCCCC--cC--CccceeEEEEEECCEEEEEEECCCCHH----------HHHHHHH
Confidence 478999999999999999999987632221 12 344556667777889999999999873 2233456
Q ss_pred HhhccCEEEEEEecCCCCCHhHH--HHHHHHHhhC---CCCcEEEEecCCCcccCCcCcHHHHHHHHH--h---cCCCCc
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHA---PQIKPIVAMNKCESLHNGTGSLAGAAAESL--M---LGFGDP 269 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~~---~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~--~---~~~~~~ 269 (607)
++..+|++++|+|++++.+..+. .+...+.... .+.|+++|+||+|+..... .++....+. . .++ ++
T Consensus 87 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~-~~ 163 (190)
T 2h57_A 87 YYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVT--SVKVSQLLCLENIKDKPW-HI 163 (190)
T ss_dssp GGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCC--HHHHHHHHTGGGCCSSCE-EE
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCC--HHHHHHHhChhhccCCce-EE
Confidence 78999999999999886444431 2223333221 4789999999999976422 222222221 1 122 67
Q ss_pred EEeecCCCCChHHHHHHhccchH
Q 007334 270 IAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 270 i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
+++||++|.|++++++.|.+.+.
T Consensus 164 ~~~Sa~~~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 164 CASDAIKGEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp EECBTTTTBTHHHHHHHHHHHC-
T ss_pred EEccCCCCcCHHHHHHHHHHHHH
Confidence 99999999999999999987664
No 207
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.81 E-value=2.4e-19 Score=172.57 Aligned_cols=149 Identities=22% Similarity=0.188 Sum_probs=106.2
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++.. ......++++.+.....+.+++ ..+.||||||..+..... .
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~----------~ 75 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKK-FSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLG----------V 75 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC-CCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSC----------C
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC-CCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhH----------H
Confidence 35899999999999999999999874 3334455566676666666665 478899999975542111 2
Q ss_pred HHHhhccEEEEEeccchhh-----------H--Hh-----cCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCC
Q 007334 401 KNLMRAHVVALVLDAEEVR-----------A--VE-----EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIP 462 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~-----------~--~~-----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (607)
.+++.+|++|+|+|++++. . .. .++|+++|+||+|+.+.....+.... +..
T Consensus 76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~--------~~~--- 144 (207)
T 1vg8_A 76 AFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQA--------WCY--- 144 (207)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHH--------HHH---
T ss_pred HHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHH--------HHH---
Confidence 3567899999999998751 0 11 47899999999999743222111111 111
Q ss_pred CCCCCCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 463 QVTGIPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 463 ~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
...+++++++||++|.|++++|+.|.+.+.+
T Consensus 145 ~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 145 SKNNIPYFETSAKEAINVEQAFQTIARNALK 175 (207)
T ss_dssp HTTSCCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred hcCCceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 1236789999999999999999999887653
No 208
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.81 E-value=4.9e-20 Score=175.02 Aligned_cols=148 Identities=21% Similarity=0.208 Sum_probs=102.3
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++... .....++++.+.....+.+++ ..+.||||||..+.. .....
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---------~~~~~ 88 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRF-PDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFR---------KSMVQ 88 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSC-CSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHH---------TTTHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhh---------hhhhH
Confidence 458999999999999999999997643 233345555566666667776 478899999964321 01234
Q ss_pred HHHhhccEEEEEeccchh-----------hH--H--hcCCcEEEEEeCccCCCCcCch-HHHHHHHHhcHHHHHhhCCCC
Q 007334 401 KNLMRAHVVALVLDAEEV-----------RA--V--EEGRGLVVIVNKMDLLSGRQNS-ALYKRVKEAVPQEIQTVIPQV 464 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~-----------~~--~--~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 464 (607)
.+++.+|++|+|+|+++. .. . ..++|+++|+||+|+.+..... +... .+.+ .
T Consensus 89 ~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~--------~~~~----~ 156 (189)
T 1z06_A 89 HYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQ--------KFAD----T 156 (189)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHH--------HHHH----H
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHH--------HHHH----H
Confidence 567899999999999875 01 1 2478999999999997543211 1111 1111 1
Q ss_pred CCCCEEEcccCCC---CCHHHHHHHHHHHHH
Q 007334 465 TGIPVVFTSALEG---RGRIAVMHQVIDTYQ 492 (607)
Q Consensus 465 ~~~~~v~iSA~~g---~gv~~l~~~i~~~~~ 492 (607)
.+++++++||++| .|++++|+.+.+.+.
T Consensus 157 ~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 157 HSMPLFETSAKNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp TTCCEEECCSSSGGGGSCHHHHHHHHC----
T ss_pred cCCEEEEEeCCcCCcccCHHHHHHHHHHHHh
Confidence 2568999999999 999999999876543
No 209
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.81 E-value=2.4e-20 Score=198.46 Aligned_cols=164 Identities=18% Similarity=0.266 Sum_probs=118.1
Q ss_pred ccCCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCe-eEEEecCCCCccccCchhHHHHHHH
Q 007334 117 INLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDL-RFKVLDSAGLETEATSGSILDRTAG 195 (607)
Q Consensus 117 ~~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~-~~~liDTpG~~~~~~~~~~~~~~~~ 195 (607)
....++|+|+|.+|||||||+|+|++...+.++..++ +|.+.....+.+.+. .+.+|||||+......... ...
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~g--tT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~---~~~ 105 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAG--TTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRL---RVE 105 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC---------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCC---CHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCC--eeeeeEEEEEEECCCCeEEEEECcCCCcccchhHH---HHH
Confidence 3446799999999999999999999988777777777 888888888887766 8999999999854432211 234
Q ss_pred HHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 196 MTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 196 ~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
.+..++..+|++|+|+|+ +....+..+..++.+. +.|+++|+||+|+...... +.........+. +++++||+
T Consensus 106 ~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~--~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~-~v~~vSAk 178 (423)
T 3qq5_A 106 KARRVFYRADCGILVTDS--APTPYEDDVVNLFKEM--EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEA-KVLLVSAL 178 (423)
T ss_dssp HHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHT--TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTC-CCCCCSSC
T ss_pred HHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhc--CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCC-CEEEEECC
Confidence 466788999999999999 5666777788888877 8899999999999876543 111222223455 78999999
Q ss_pred CCCChHHHHHHhccchH
Q 007334 276 TGLGMTELYEALRPSVE 292 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~ 292 (607)
+|.|++++++.|.+.++
T Consensus 179 tg~gI~eL~~~L~~~l~ 195 (423)
T 3qq5_A 179 QKKGFDDIGKTISEILP 195 (423)
T ss_dssp CTTSTTTHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHhhh
Confidence 99999999999987764
No 210
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.81 E-value=1.5e-19 Score=173.46 Aligned_cols=144 Identities=19% Similarity=0.222 Sum_probs=96.4
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
.++|+++|++|||||||+|+|++.......++.+.+ ...+.+++..+.+|||||+.+... ....++
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~----~~~~~~~~~~l~i~Dt~G~~~~~~----------~~~~~~ 90 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT----SEELTIAGMTFTTFDLGGHIQARR----------VWKNYL 90 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC------CCCCCS----CEEEEETTEEEEEEEECC----CC----------GGGGGG
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCce----eEEEEECCEEEEEEECCCcHhhHH----------HHHHHH
Confidence 479999999999999999999987544444444443 346678889999999999755421 112456
Q ss_pred hhccEEEEEeccchh-----------hH----HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhh--------
Q 007334 404 MRAHVVALVLDAEEV-----------RA----VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTV-------- 460 (607)
Q Consensus 404 ~~ad~~llViD~~~~-----------~~----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-------- 460 (607)
+.+|++++|+|+++. .. ...++|+++|+||+|+.+..... .+.+ .+...
T Consensus 91 ~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~----~~~~----~~~~~~~~~~~~~ 162 (198)
T 1f6b_A 91 PAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEE----RLRE----MFGLYGQTTGKGS 162 (198)
T ss_dssp GGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHH----HHHH----HHTCTTTCCCSSC
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHH----HHHH----HhCcccccccccc
Confidence 789999999999875 11 12478999999999997632211 1111 11100
Q ss_pred --CC--CCCCCCEEEcccCCCCCHHHHHHHHHH
Q 007334 461 --IP--QVTGIPVVFTSALEGRGRIAVMHQVID 489 (607)
Q Consensus 461 --~~--~~~~~~~v~iSA~~g~gv~~l~~~i~~ 489 (607)
+. .....+++++||++|.|++++|+.+.+
T Consensus 163 ~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~ 195 (198)
T 1f6b_A 163 VSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQ 195 (198)
T ss_dssp CCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred cccccccCceEEEEEEECCCCCCHHHHHHHHHH
Confidence 00 123568999999999999999998865
No 211
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.81 E-value=3.1e-20 Score=178.38 Aligned_cols=149 Identities=19% Similarity=0.157 Sum_probs=101.9
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEE--cCeEEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEY--QGRTVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++.... ..+..++.+.....+.+ .+..+.||||||..+.... ..
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----------~~ 90 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFS--EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSIL----------PY 90 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC--SCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCC----------CG
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHH----------HH
Confidence 4589999999999999999999987533 33444444444444443 3467789999997654211 12
Q ss_pred HHHhhccEEEEEeccchh----------h-H----HhcCCcEEEEEeCccCCCCcCch-HHHHHHHHhcHHHHHhhCCCC
Q 007334 401 KNLMRAHVVALVLDAEEV----------R-A----VEEGRGLVVIVNKMDLLSGRQNS-ALYKRVKEAVPQEIQTVIPQV 464 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~----------~-~----~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 464 (607)
.+++.+|++++|+|+++. . . ...++|+++|+||+|+.+..... ..... +.. .
T Consensus 91 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~--------~~~----~ 158 (201)
T 3oes_A 91 SFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKK--------LAE----S 158 (201)
T ss_dssp GGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHH--------HHH----H
T ss_pred HHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHH--------HHH----H
Confidence 456789999999999865 0 1 12378999999999997543321 11111 111 1
Q ss_pred CCCCEEEcccCCCCCHHHHHHHHHHHHHHHh
Q 007334 465 TGIPVVFTSALEGRGRIAVMHQVIDTYQKWC 495 (607)
Q Consensus 465 ~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~ 495 (607)
.+++++++||++|.|++++|+.|.+.+.+..
T Consensus 159 ~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~~ 189 (201)
T 3oes_A 159 WGATFMESSARENQLTQGIFTKVIQEIARVE 189 (201)
T ss_dssp HTCEEEECCTTCHHHHHHHHHHHHHHHHHC-
T ss_pred hCCeEEEEeCCCCCCHHHHHHHHHHHHHhhh
Confidence 2568999999999999999999988775443
No 212
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.81 E-value=1.3e-19 Score=170.35 Aligned_cols=146 Identities=18% Similarity=0.176 Sum_probs=101.4
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.++|+++|.+|||||||+|+|++.... ....++++.+.....+.+++ ..+.||||||..+... ....
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------~~~~ 80 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKDQFV-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS----------LAPM 80 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCT-TTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGG----------GTHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCC-CcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhh----------hhHH
Confidence 589999999999999999999976432 22334444444445555654 4788999999654321 1235
Q ss_pred HHhhccEEEEEeccchhh-----------HH---hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEVR-----------AV---EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~~-----------~~---~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
+++.+|++|+|+|+++.. .. ..++|+++|+||+|+.+...... +... ++.+ ..++
T Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~--~~~~-----~~~~----~~~~ 149 (181)
T 2efe_B 81 YYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTA--EDAQ-----TYAQ----ENGL 149 (181)
T ss_dssp HHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCH--HHHH-----HHHH----HTTC
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCH--HHHH-----HHHH----HcCC
Confidence 678899999999998751 11 13789999999999976432211 1111 1111 1256
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+++++||++|.|++++|+.|.+.+
T Consensus 150 ~~~~~Sa~~g~gi~~l~~~l~~~~ 173 (181)
T 2efe_B 150 FFMETSAKTATNVKEIFYEIARRL 173 (181)
T ss_dssp EEEECCSSSCTTHHHHHHHHHHTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 899999999999999999987754
No 213
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.81 E-value=4.3e-19 Score=166.51 Aligned_cols=144 Identities=18% Similarity=0.205 Sum_probs=99.7
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.+||+++|.+|||||||+|+|++..... +..|+.+.....+.+++. .+.||||||..+ ..
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~---------------~~ 68 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTGSYQV---LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD---------------AK 68 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHSCCCC---CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC---------------HH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCC---cCCCcceeEEEEEEECCEEEEEEEEECCCCch---------------hH
Confidence 5899999999999999999999875433 223333444556667665 567899999532 24
Q ss_pred HHhhccEEEEEeccchh-------h---HH---h----cCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCC
Q 007334 402 NLMRAHVVALVLDAEEV-------R---AV---E----EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQV 464 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~-------~---~~---~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (607)
+++.+|++|+|+|+++. . .. . .++|+++|+||+|+..........+... ++.+. .
T Consensus 69 ~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~-----~~~~~---~ 140 (178)
T 2iwr_A 69 FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARAR-----ALXAD---M 140 (178)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHH-----HHHHH---H
T ss_pred HHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHH-----HHHHh---h
Confidence 66789999999999876 1 11 1 3789999999999953211111111111 11111 1
Q ss_pred CCCCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 465 TGIPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 465 ~~~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
.+.+++++||++|.|++++|+.+.+.+.+
T Consensus 141 ~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 169 (178)
T 2iwr_A 141 KRCSYYETXATYGLNVDRVFQEVAQKVVT 169 (178)
T ss_dssp SSEEEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred cCCeEEEEeccccCCHHHHHHHHHHHHHH
Confidence 25689999999999999999999876543
No 214
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.80 E-value=4e-20 Score=174.95 Aligned_cols=158 Identities=11% Similarity=0.126 Sum_probs=109.4
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC--CeeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG--DLRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+++|.+|||||||+|+|++.... ..... +..+.....+... ...+.+|||||+.. +....
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~ 72 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVP--TVFENYTASFEIDTQRIELSLWDTSGSPY----------YDNVR 72 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCC--CSEEEEEEEEECSSCEEEEEEEEECCSGG----------GTTTG
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCC--ccceeEEEEEEECCEEEEEEEEECCCChh----------hhhhH
Confidence 368999999999999999999987642 11111 2222222233333 35789999999873 22233
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH--HHHHHHHhhCCCCcEEEEecCCCcccC------------CcCcHHHHHHHHHh
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHN------------GTGSLAGAAAESLM 263 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~D~~~~------------~~~~~~~~~~~~~~ 263 (607)
..++..+|++++|+|++++.+..+. .+...++...++.|+++|+||+|+... +....++....+..
T Consensus 73 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 152 (184)
T 1m7b_A 73 PLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQ 152 (184)
T ss_dssp GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHH
T ss_pred HhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHH
Confidence 4467899999999999986655542 244445555568999999999999753 22333444444555
Q ss_pred cCCCCcEEeecC-CCCChHHHHHHhccch
Q 007334 264 LGFGDPIAISAE-TGLGMTELYEALRPSV 291 (607)
Q Consensus 264 ~~~~~~i~iSA~-~g~gi~eL~~~i~~~l 291 (607)
++..+++++||+ +|.|++++++.|.+.+
T Consensus 153 ~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 153 IGAATYIECSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp HTCSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred cCCcEEEEeeecCCCcCHHHHHHHHHHHH
Confidence 564478999999 6899999999987654
No 215
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=1.9e-19 Score=171.30 Aligned_cols=147 Identities=18% Similarity=0.161 Sum_probs=102.1
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.++|+++|.+|||||||+|+|++... .....+.++.+.....+.+++ ..+.||||||..+... ....
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------~~~~ 83 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTF-DPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRT----------LTPS 83 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC-CTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCC----------SHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCC-CccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhh----------hhHH
Confidence 58999999999999999999997642 223333334444444555555 4678999999754421 1245
Q ss_pred HHhhccEEEEEeccchhh----------HH-----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEVR----------AV-----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~~----------~~-----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
+++.+|++|+|+|+++.. .+ ..++|+++|+||+|+.+.....+... .+.+. .+
T Consensus 84 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~--------~~~~~----~~ 151 (195)
T 1x3s_A 84 YYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGL--------KFARK----HS 151 (195)
T ss_dssp HHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHH--------HHHHH----TT
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHH--------HHHHH----cC
Confidence 678999999999998761 11 13689999999999954321111111 11111 25
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
++++++||++|.|++++|+.+.+.+.+
T Consensus 152 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 178 (195)
T 1x3s_A 152 MLFIEASAKTCDGVQCAFEELVEKIIQ 178 (195)
T ss_dssp CEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHh
Confidence 689999999999999999999887653
No 216
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.80 E-value=6.6e-20 Score=172.18 Aligned_cols=152 Identities=20% Similarity=0.198 Sum_probs=99.4
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEc---CeEEEEEecCCCcccccccCcchhHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQ---GRTVYLVDTAGWLQREKEKGPASLSVMQS 399 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 399 (607)
..++|+++|.+|||||||+|+|++.. ......++++.+.....+.++ ...+.||||||..+.. ...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~ 75 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDK-YSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQ----------SLG 75 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC-CCTTC---CCCSCEEEEECCSSSCCEEEEEECCC-------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCc-CCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhh----------hhh
Confidence 35899999999999999999999764 223334455556665666655 3478999999964432 112
Q ss_pred HHHHhhccEEEEEeccchhh-----------H--H-----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhC
Q 007334 400 RKNLMRAHVVALVLDAEEVR-----------A--V-----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVI 461 (607)
Q Consensus 400 ~~~i~~ad~~llViD~~~~~-----------~--~-----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (607)
..+++.+|++|+|+|+++.. . . ..++|+++|+||+|+....... ..+.. .++.+.
T Consensus 76 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v-~~~~~-----~~~~~~- 148 (182)
T 1ky3_A 76 VAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIV-SEKSA-----QELAKS- 148 (182)
T ss_dssp -CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCS-CHHHH-----HHHHHH-
T ss_pred HHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccC-CHHHH-----HHHHHh-
Confidence 34567899999999998751 0 1 1578999999999996432110 00111 111111
Q ss_pred CCCCCCCEEEcccCCCCCHHHHHHHHHHHHHHH
Q 007334 462 PQVTGIPVVFTSALEGRGRIAVMHQVIDTYQKW 494 (607)
Q Consensus 462 ~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~ 494 (607)
..+.+++++||++|.|++++|+.+.+.+.+.
T Consensus 149 --~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 149 --LGDIPLFLTSAKNAINVDTAFEEIARSALQQ 179 (182)
T ss_dssp --TTSCCEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred --cCCCeEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 2367899999999999999999998876543
No 217
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=2.3e-19 Score=171.51 Aligned_cols=146 Identities=22% Similarity=0.228 Sum_probs=103.2
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++... ...+.+++.+.....+.+++ ..+.||||||+.+ .....
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-----------~~~~~ 93 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRF--IWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-----------TIQRE 93 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-----------CHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCC--CcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-----------ccchh
Confidence 358999999999999999999998643 22333444444444556665 4678999999653 12334
Q ss_pred HHHhhccEEEEEeccchh-----------hH----HhcCCcEEEEEeCccCCCCcCch-HHHHHHHHhcHHHHHhhCCCC
Q 007334 401 KNLMRAHVVALVLDAEEV-----------RA----VEEGRGLVVIVNKMDLLSGRQNS-ALYKRVKEAVPQEIQTVIPQV 464 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~-----------~~----~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 464 (607)
.+++.+|++++|+|+++. .. ...++|+++|+||+|+.+..... +.... +.+.
T Consensus 94 ~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~--------~~~~---- 161 (196)
T 2atv_A 94 GHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEK--------LATE---- 161 (196)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHH--------HHHH----
T ss_pred hhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHH--------HHHH----
Confidence 677889999999999875 01 12478999999999997642211 11111 1111
Q ss_pred CCCCEEEcccCCCC-CHHHHHHHHHHHHHH
Q 007334 465 TGIPVVFTSALEGR-GRIAVMHQVIDTYQK 493 (607)
Q Consensus 465 ~~~~~v~iSA~~g~-gv~~l~~~i~~~~~~ 493 (607)
.+++++++||++|. |++++|+.+.+.+.+
T Consensus 162 ~~~~~~~~Sa~~g~~gi~~l~~~l~~~i~~ 191 (196)
T 2atv_A 162 LACAFYECSACTGEGNITEIFYELCREVRR 191 (196)
T ss_dssp HTSEEEECCTTTCTTCHHHHHHHHHHHHHH
T ss_pred hCCeEEEECCCcCCcCHHHHHHHHHHHHHh
Confidence 15689999999999 999999999887654
No 218
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.80 E-value=8.1e-20 Score=177.51 Aligned_cols=159 Identities=18% Similarity=0.153 Sum_probs=95.1
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++... ...+.+++.+.....+.+++. .+.||||||..+.. ....
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~----------~~~~ 100 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAF--PESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYD----------RLRP 100 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC---------CCCCCEEEEEEEEETTEEEEEEEEEC---------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCC--CCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhh----------HHHH
Confidence 358999999999999999999997642 334445555555556667665 67899999965432 1123
Q ss_pred HHHhhccEEEEEeccchhh-----------H---HhcCCcEEEEEeCccCCCCcCchHHHHHHH-HhcHHHHHhhCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEVR-----------A---VEEGRGLVVIVNKMDLLSGRQNSALYKRVK-EAVPQEIQTVIPQVT 465 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~-----------~---~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 465 (607)
.++..+|++|+|+|+++.. . ...++|+++|+||+|+.......+.++... +.+..+....++...
T Consensus 101 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 180 (214)
T 2j1l_A 101 LFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSV 180 (214)
T ss_dssp ----CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHT
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhc
Confidence 4677899999999998751 0 113789999999999976532111110000 011111111111112
Q ss_pred CC-CEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 466 GI-PVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 466 ~~-~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
+. +++++||++|.|++++|+.+.+.+.+
T Consensus 181 ~~~~~~~~SA~~g~gi~el~~~l~~~~~~ 209 (214)
T 2j1l_A 181 GAVAYLECSARLHDNVHAVFQEAAEVALS 209 (214)
T ss_dssp TCSEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 44 89999999999999999999887654
No 219
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=7.3e-20 Score=170.08 Aligned_cols=145 Identities=19% Similarity=0.201 Sum_probs=96.9
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.++|+++|.+|||||||+|+|++.... ....+ +........+..++ ..+.+|||||+.+.. .....
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~-t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~----------~~~~~ 70 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFR-ESYIP-TVEDTYRQVISCDKSICTLQITDTTGSHQFP----------AMQRL 70 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCC-SSCCC-CSCEEEEEEEEETTEEEEEEEEECCSCSSCH----------HHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCC-CccccEEEEEEECCEEEEEEEEECCCchhhH----------HHHHH
Confidence 479999999999999999999976421 11222 22222223344444 367899999965431 22345
Q ss_pred HHhhccEEEEEeccchh-----------hHHh-----cCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCC
Q 007334 402 NLMRAHVVALVLDAEEV-----------RAVE-----EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVT 465 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~-----------~~~~-----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (607)
++..+|++++|+|+++. .... .++|+++|+||+|+.+....... .. . .+... .
T Consensus 71 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~--~~-~----~~~~~----~ 139 (172)
T 2erx_A 71 SISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSS--EA-E----ALART----W 139 (172)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHH--HH-H----HHHHH----H
T ss_pred hcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHH--HH-H----HHHHH----h
Confidence 67789999999999875 0111 37899999999999754332110 00 1 11111 1
Q ss_pred CCCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 466 GIPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 466 ~~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+++++++||++|.|++++|+.+.+.+
T Consensus 140 ~~~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (172)
T 2erx_A 140 KCAFMETSAKLNHNVKELFQELLNLE 165 (172)
T ss_dssp TCEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred CCeEEEecCCCCcCHHHHHHHHHHHH
Confidence 46899999999999999999988754
No 220
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.80 E-value=1.6e-19 Score=174.00 Aligned_cols=156 Identities=19% Similarity=0.247 Sum_probs=103.5
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEE--EEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVY--LVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~--liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+++|++. .....+.+++.+.....+.+++..+. ||||||+.+... ...
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----------~~~ 96 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTN--AFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDR----------LRP 96 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHS--CCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTT----------TGG
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhC--CCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHH----------HHH
Confidence 4589999999999999999999975 33455667777777777777776555 999999754421 112
Q ss_pred HHHhhccEEEEEeccchhh-----------HH---hcCCcEEEEEeCccCCCCcCchHHHHHHH-HhcHHHHHhhC-CCC
Q 007334 401 KNLMRAHVVALVLDAEEVR-----------AV---EEGRGLVVIVNKMDLLSGRQNSALYKRVK-EAVPQEIQTVI-PQV 464 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~-----------~~---~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~ 464 (607)
.+++.+|++++|+|+++.. .. ..++|+++|+||+|+.+.....+...... +.+..+....+ ...
T Consensus 97 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 176 (204)
T 4gzl_A 97 LSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI 176 (204)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHT
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhc
Confidence 3567899999999998761 11 13899999999999976532111111000 00111111111 112
Q ss_pred CCCCEEEcccCCCCCHHHHHHHHHHH
Q 007334 465 TGIPVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 465 ~~~~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
...+++++||++|.|++++|+.+.+.
T Consensus 177 ~~~~~~~~SA~~g~gi~~l~~~l~~~ 202 (204)
T 4gzl_A 177 GAVKYLECSALTQRGLKTVFDEAIRA 202 (204)
T ss_dssp TCSEEEECCTTTCTTHHHHHHHHHHT
T ss_pred CCcEEEEeeCCCCCCHHHHHHHHHHH
Confidence 23469999999999999999988763
No 221
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.80 E-value=1.6e-21 Score=187.06 Aligned_cols=160 Identities=17% Similarity=0.228 Sum_probs=106.4
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+|+|.+|||||||+|+|++...... ..+. ++.+.....+.+++ ..+.+|||||+.... ..+
T Consensus 33 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~ 99 (199)
T 3l0i_B 33 LFKLLLIGDSGVGKSCLLLRFADDTYTES-YIST--IGVDFKIRTIELDGKTIKLQIWDTAGQERFR----------TIT 99 (199)
T ss_dssp EEEEEEECCTTSCCTTTTTSSBCCCCCCH-HHHH--HCCSEEEEEEEETTEEEEEEEECCTTCTTCC----------CCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCC-cCCc--ccceEEEEEEEECCEEEEEEEEECCCcHhHH----------HHH
Confidence 46899999999999999999998764322 1222 55566666666666 579999999987322 223
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..++..+|++++|+|++++.+.... .+...+... ..+.|+++|+||+|+...+..............+. +++++||+
T Consensus 100 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~vSA~ 178 (199)
T 3l0i_B 100 SSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGI-PFLETSAK 178 (199)
T ss_dssp CC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTC-CBCCCCC-
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCC-eEEEEECC
Confidence 4567899999999999987655442 222333332 23689999999999986554333333344555666 78999999
Q ss_pred CCCChHHHHHHhccchHH
Q 007334 276 TGLGMTELYEALRPSVED 293 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~~ 293 (607)
+|.|++++++.|.+.+.+
T Consensus 179 ~g~gv~~l~~~l~~~l~~ 196 (199)
T 3l0i_B 179 NATNVEQSFMTMAAEIKK 196 (199)
T ss_dssp --HHHHHHHHHHTTTTTT
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999887643
No 222
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.80 E-value=1.9e-19 Score=174.55 Aligned_cols=155 Identities=15% Similarity=0.207 Sum_probs=102.6
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEc---CeEEEEEecCCCcccccccCcchhHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQ---GRTVYLVDTAGWLQREKEKGPASLSVMQS 399 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 399 (607)
..++|+++|.+|||||||+++|++.. ....+++++.+... +.++ +..+.||||||+.+. .....
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~---------~~~~~ 72 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQ--YRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESL---------RFQLL 72 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSC--CCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHH---------HHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC--cccccCCcceeeEE--EEecCCCccEEEEEECCCChhH---------HHHHH
Confidence 35799999999999999999999875 34445555554433 5555 568999999996432 21123
Q ss_pred HHHHhhccEEEEEeccchhh---------H---------HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHH------
Q 007334 400 RKNLMRAHVVALVLDAEEVR---------A---------VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQ------ 455 (607)
Q Consensus 400 ~~~i~~ad~~llViD~~~~~---------~---------~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~------ 455 (607)
..+++.+|++|+|+|+++.. . ...++|+++|+||+|+..........+.+.+.+..
T Consensus 73 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~ 152 (214)
T 2fh5_B 73 DRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRS 152 (214)
T ss_dssp HHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccch
Confidence 45688999999999998730 0 02368999999999998765443333333322210
Q ss_pred -----------------HHHhhCCCCC---CCCEEEcccCCC------CCHHHHHHHHHHH
Q 007334 456 -----------------EIQTVIPQVT---GIPVVFTSALEG------RGRIAVMHQVIDT 490 (607)
Q Consensus 456 -----------------~~~~~~~~~~---~~~~v~iSA~~g------~gv~~l~~~i~~~ 490 (607)
+..+.++... .++++++||++| .|++++|+.|.+.
T Consensus 153 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 153 AAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp ------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred hccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 0000111101 678999999999 9999999988763
No 223
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.80 E-value=7.4e-20 Score=177.79 Aligned_cols=147 Identities=23% Similarity=0.203 Sum_probs=102.5
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEc------------CeEEEEEecCCCcccccccC
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQ------------GRTVYLVDTAGWLQREKEKG 390 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~------------~~~~~liDTpG~~~~~~~~~ 390 (607)
..++|+++|.+|||||||+|+|++... .....++++.+.....+.++ ...+.||||||..+.
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~----- 97 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDNKF-NPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERF----- 97 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCC-CCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHH-----
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcCCC-CcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhH-----
Confidence 358999999999999999999997642 22223334444444455554 357889999995322
Q ss_pred cchhHHHHHHHHHhhccEEEEEeccchhh-------HH--------hcCCcEEEEEeCccCCCCcCch-HHHHHHHHhcH
Q 007334 391 PASLSVMQSRKNLMRAHVVALVLDAEEVR-------AV--------EEGRGLVVIVNKMDLLSGRQNS-ALYKRVKEAVP 454 (607)
Q Consensus 391 ~~~~~~~~~~~~i~~ad~~llViD~~~~~-------~~--------~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~ 454 (607)
. .....+++.+|++|+|+|+++.. .. ..++|+++|+||+|+.+..... +...
T Consensus 98 ----~-~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~------- 165 (217)
T 2f7s_A 98 ----R-SLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQAR------- 165 (217)
T ss_dssp ----H-HHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHH-------
T ss_pred ----H-hHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHH-------
Confidence 1 23456788999999999998751 11 1578999999999997543221 1111
Q ss_pred HHHHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 455 QEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 455 ~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
++.+. .+++++++||++|.|++++|+.|.+.+.
T Consensus 166 -~~~~~----~~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 198 (217)
T 2f7s_A 166 -ELADK----YGIPYFETSAATGQNVEKAVETLLDLIM 198 (217)
T ss_dssp -HHHHH----TTCCEEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred -HHHHH----CCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 11111 2568999999999999999999987654
No 224
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.80 E-value=9.5e-20 Score=174.36 Aligned_cols=159 Identities=15% Similarity=0.116 Sum_probs=103.7
Q ss_pred cCCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEee-eCCeeEEEecCCCCccccCchhHHHHHHHH
Q 007334 118 NLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAK-LGDLRFKVLDSAGLETEATSGSILDRTAGM 196 (607)
Q Consensus 118 ~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~-~~~~~~~liDTpG~~~~~~~~~~~~~~~~~ 196 (607)
....+|+++|.+|||||||+|++++..... ...+...+.......+. .....+.+|||||++... ..
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----------~~ 85 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHKMSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFF----------DP 85 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSCCCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTT----------CT
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhcCCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHH----------hh
Confidence 446799999999999999999998753221 11111112222221121 345789999999987321 22
Q ss_pred H---HHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhh---CCCCcEEEEecCCCcccCCc-------CcHHHHHHHHH-
Q 007334 197 T---ANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH---APQIKPIVAMNKCESLHNGT-------GSLAGAAAESL- 262 (607)
Q Consensus 197 ~---~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~---~~~~p~ilV~NK~D~~~~~~-------~~~~~~~~~~~- 262 (607)
. ..++..+|++|+|+|++++.......+..|+.+. .++.|+++|+||+|+..... ...........
T Consensus 86 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~ 165 (196)
T 3llu_A 86 TFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADA 165 (196)
T ss_dssp TCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHh
Confidence 2 4677899999999999987333334566777653 56899999999999875321 11111112222
Q ss_pred ---hcCCCCcEEeecCCCCChHHHHHHhccc
Q 007334 263 ---MLGFGDPIAISAETGLGMTELYEALRPS 290 (607)
Q Consensus 263 ---~~~~~~~i~iSA~~g~gi~eL~~~i~~~ 290 (607)
..+. .++++||++ .|++++++.|.+.
T Consensus 166 ~~~~~~~-~~~e~Sa~~-~~v~~~f~~l~~~ 194 (196)
T 3llu_A 166 GLEKLHL-SFYLTSIYD-HSIFEAFSKVVQK 194 (196)
T ss_dssp TCTTSCE-EEEEECTTS-THHHHHHHHHHHH
T ss_pred hhhcCCc-ceEEEEech-hhHHHHHHHHHHH
Confidence 2333 679999999 9999999998754
No 225
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.80 E-value=9.5e-20 Score=199.84 Aligned_cols=158 Identities=15% Similarity=0.143 Sum_probs=109.5
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
..++|+++|.||||||||+|+|++.... ...+ |++.....+.+.+..+.||||||+.+... .+..+
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~~--~~~~--T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~~~~~ 386 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQSV--TTIP--TVGFNVETVTYKNVKFNVWDVGGQDKIRP----------LWRHY 386 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSCC--CCCC--CSSEEEEEEESSSCEEEEEEECCCGGGSG----------GGGGG
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCCC--CcCC--ccceeEEEEEeCCEEEEEEECCCcHHHHH----------HHHHH
Confidence 4589999999999999999999987633 2232 55555566777889999999999755421 12356
Q ss_pred HhhccEEEEEeccchh-----------hHH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~-----------~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
++.+|++|+|+|+++. ... ..++|+|||+||+|+.+..... .+...+........++
T Consensus 387 ~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~--------~~~~~~~~~~~~~~~~ 458 (497)
T 3lvq_E 387 YTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH--------EIQEKLGLTRIRDRNW 458 (497)
T ss_dssp GTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHH--------HHHHHTTCTTCCSSCE
T ss_pred hccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHH--------HHHHHhchhhhhcCCe
Confidence 7889999999999875 111 1479999999999997653221 1122222223334456
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHHHHHhcCCChHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSR 502 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~~ 502 (607)
+++++||++|.|++++|+.|.+.++++..+.+|..
T Consensus 459 ~~~~~SA~~g~gi~~l~~~l~~~~~~~~~~~~~~~ 493 (497)
T 3lvq_E 459 YVQPSCATSGDGLYEGLTWLTSNYKSKLAAALEHH 493 (497)
T ss_dssp EEEECBTTTTBTHHHHHHHHHHHCC----------
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcCCCCCccc
Confidence 89999999999999999999998887777776643
No 226
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.80 E-value=2e-20 Score=177.67 Aligned_cols=156 Identities=18% Similarity=0.164 Sum_probs=108.1
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
...+|+++|.+|||||||+|+|++...... .| |.......+...+..+.+|||||+..... .+.
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~--~~----t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~----------~~~ 84 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVTT--VP----TVGVNLETLQYKNISFEVWDLGGQTGVRP----------YWR 84 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEEE--CS----STTCCEEEEEETTEEEEEEEECCSSSSCC----------CCS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCc--CC----CCceEEEEEEECCEEEEEEECCCCHhHHH----------HHH
Confidence 357899999999999999999987765322 22 22233445566789999999999873321 223
Q ss_pred HHhhccCEEEEEEecCCCCCHhHH--HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHH-----hcCCCCcE
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESL-----MLGFGDPI 270 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~-----~~~~~~~i 270 (607)
.++..+|++++|+|++++.+..+. .+...+... ..+.|+++|+||+|+..... ..+...... ..++ +++
T Consensus 85 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~-~~~ 161 (189)
T 2x77_A 85 CYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAAS--EAEIAEQLGVSSIMNRTW-TIV 161 (189)
T ss_dssp SSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCE-EEE
T ss_pred HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCC--HHHHHHHhChhhccCCce-EEE
Confidence 457899999999999988766542 122333221 24789999999999976432 111111111 1122 579
Q ss_pred EeecCCCCChHHHHHHhccchHH
Q 007334 271 AISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 271 ~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
++||++|.|++++++.|.+.+.+
T Consensus 162 ~~Sa~~~~gi~~l~~~l~~~i~~ 184 (189)
T 2x77_A 162 KSSSKTGDGLVEGMDWLVERLRE 184 (189)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EccCCCccCHHHHHHHHHHHHHh
Confidence 99999999999999999887754
No 227
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=6.9e-19 Score=168.10 Aligned_cols=150 Identities=17% Similarity=0.154 Sum_probs=100.8
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++.... . .+..+..+.....+..++. .+.||||||+.+.. ....
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~-~-~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~~ 74 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFR-D-TYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFP----------AMQR 74 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCC-C-TTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCH----------HHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCC-C-cccCccccceeEEEEECCEEEEEEEEeCCChHHhH----------HHHH
Confidence 3589999999999999999999976432 1 1222222222333444543 67899999964331 2234
Q ss_pred HHHhhccEEEEEeccchhh-----------HH-----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCC
Q 007334 401 KNLMRAHVVALVLDAEEVR-----------AV-----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQV 464 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~-----------~~-----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (607)
.++..+|++++|+|+++.. .. ..++|+++|+||+|+.+.....+....+ ...
T Consensus 75 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~--------~~~---- 142 (199)
T 2gf0_A 75 LSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAV--------AQE---- 142 (199)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHH--------HHH----
T ss_pred HhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHH--------HHH----
Confidence 5678899999999998750 11 1368999999999997642222111111 111
Q ss_pred CCCCEEEcccCCCCCHHHHHHHHHHHHHHHhc
Q 007334 465 TGIPVVFTSALEGRGRIAVMHQVIDTYQKWCL 496 (607)
Q Consensus 465 ~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~ 496 (607)
.+++++++||++|.|++++|+.+.+.+.++..
T Consensus 143 ~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 174 (199)
T 2gf0_A 143 WKCAFMETSAKMNYNVKELFQELLTLETRRNM 174 (199)
T ss_dssp HTCEEEECBTTTTBSHHHHHHHHHHHCSSSCE
T ss_pred hCCeEEEEecCCCCCHHHHHHHHHHHHhhhhc
Confidence 14689999999999999999999887654433
No 228
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.80 E-value=4e-19 Score=168.36 Aligned_cols=146 Identities=17% Similarity=0.154 Sum_probs=100.5
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..+||+++|.+|||||||+|+|++.... ..+..| .+.....+.+++. .+.||||||..+.
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~~~~--~~~~~t-~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------------- 80 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTGTYV--QEESPE-GGRFKKEIVVDGQSYLLLIRDEGGPPEL--------------- 80 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHSSCC--CCCCTT-CEEEEEEEEETTEEEEEEEEECSSSCCH---------------
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCCC--CCcCCC-cceEEEEEEECCEEEEEEEEECCCChhh---------------
Confidence 4589999999999999999999976432 222223 3444466777775 4567999996432
Q ss_pred HHHhhccEEEEEeccchhh-----------HH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEVR-----------AV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVT 465 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~-----------~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (607)
.+++.+|++++|+|+++.. .. ..+.|+++|+||+|+..........+.. .++.+. ..
T Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~-----~~~~~~---~~ 152 (184)
T 3ihw_A 81 QFAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRA-----RKLSTD---LK 152 (184)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHH-----HHHHHH---TT
T ss_pred heecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHH-----HHHHHH---cC
Confidence 1667899999999998751 11 1468999999999995322111111111 111111 12
Q ss_pred CCCEEEcccCCCCCHHHHHHHHHHHHHHH
Q 007334 466 GIPVVFTSALEGRGRIAVMHQVIDTYQKW 494 (607)
Q Consensus 466 ~~~~v~iSA~~g~gv~~l~~~i~~~~~~~ 494 (607)
.++++++||++|.|++++|+.+.+.+.+.
T Consensus 153 ~~~~~e~Sa~~~~gv~~lf~~l~~~i~~~ 181 (184)
T 3ihw_A 153 RCTYYETCATYGLNVERVFQDVAQKVVAL 181 (184)
T ss_dssp TCEEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred CCeEEEecCCCCCCHHHHHHHHHHHHHHH
Confidence 47899999999999999999998876544
No 229
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.80 E-value=2.1e-19 Score=184.59 Aligned_cols=162 Identities=17% Similarity=0.239 Sum_probs=119.6
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee-CCeeEEEecCCCCccccCchhHHHHH-HHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL-GDLRFKVLDSAGLETEATSGSILDRT-AGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~-~~~~~ 198 (607)
.+|+++|.+|||||||+|+|++.....+...++ +|.+...+...+ ++..+.+|||||++.. ...+ ...+.
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~--~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~------~~~~~~~~~~ 75 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLG--ATIDVEHSHLRFLGNMTLNLWDCGGQDVF------MENYFTKQKD 75 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCC--CCCSEEEEEEEETTTEEEEEEEECCSHHH------HHHHHTTTHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCccccCcC--CccceEEEEEEeCCceEEEEEECCCcHHH------hhhhhhhHHH
Confidence 589999999999999999999875555666677 788887777765 6789999999998721 1111 34566
Q ss_pred HHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh---CCCCcEEEEecCCCcccC--Cc----CcHHHHHHHHHhcCC--
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH---APQIKPIVAMNKCESLHN--GT----GSLAGAAAESLMLGF-- 266 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~---~~~~p~ilV~NK~D~~~~--~~----~~~~~~~~~~~~~~~-- 266 (607)
.++..+|++++|+|++++.+..+. .+.+++... .++.|+++|+||+|+... +. ............+|+
T Consensus 76 ~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~ 155 (307)
T 3r7w_A 76 HIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPN 155 (307)
T ss_dssp HHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCS
T ss_pred HHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCC
Confidence 788999999999999998777764 344555443 568999999999999862 21 112333344555663
Q ss_pred CCcEEeecCCCCChHHHHHHhccch
Q 007334 267 GDPIAISAETGLGMTELYEALRPSV 291 (607)
Q Consensus 267 ~~~i~iSA~~g~gi~eL~~~i~~~l 291 (607)
.+++++||++ .|+.+++..+...+
T Consensus 156 ~~~~~tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 156 LIGFPTSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp CEEEECCTTS-SHHHHHHHHHHHTT
T ss_pred eEEEEeeecC-ChHHHHHHHHHHHH
Confidence 4789999999 78888887776543
No 230
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.80 E-value=1.1e-19 Score=172.56 Aligned_cols=145 Identities=21% Similarity=0.196 Sum_probs=101.7
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++.. ....+.+|+.+.....+..++. .+.||||||..+.. .+ .
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~------~~-----~ 86 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKR--FISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPR------NC-----E 86 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSS--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CC------CT-----H
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCC--CCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcch------hH-----H
Confidence 45899999999999999999999764 3345556666655555566654 56799999975432 11 2
Q ss_pred HHHhhccEEEEEeccchh-----------hHHh------cCCcEEEEEeCccCCCCcCch-HHHHHHHHhcHHHHHhhCC
Q 007334 401 KNLMRAHVVALVLDAEEV-----------RAVE------EGRGLVVIVNKMDLLSGRQNS-ALYKRVKEAVPQEIQTVIP 462 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~-----------~~~~------~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~ 462 (607)
.+++.+|++++|+|+++. .... .++|+++|+||+|+.+..... +....+ .+.
T Consensus 87 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~--------~~~-- 156 (187)
T 3c5c_A 87 RYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVAL--------AGR-- 156 (187)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHH--------HHH--
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHH--------HHH--
Confidence 467889999999999875 0111 489999999999996543211 111111 111
Q ss_pred CCCCCCEEEccc-CCCCCHHHHHHHHHHHHH
Q 007334 463 QVTGIPVVFTSA-LEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 463 ~~~~~~~v~iSA-~~g~gv~~l~~~i~~~~~ 492 (607)
.+++++++|| ++|.|++++|+.+.+.+.
T Consensus 157 --~~~~~~e~Sa~~~g~gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 157 --FGCLFFEVSACLDFEHVQHVFHEAVREAR 185 (187)
T ss_dssp --HTCEEEECCSSSCSHHHHHHHHHHHHHHH
T ss_pred --cCCcEEEEeecCccccHHHHHHHHHHHHh
Confidence 1568999999 899999999999987653
No 231
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.80 E-value=1.2e-19 Score=171.24 Aligned_cols=156 Identities=19% Similarity=0.233 Sum_probs=102.5
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.++|+++|.+|||||||+++|++.. ....+.+++.+.....+.+++. .+.||||||+.+... ....
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------~~~~ 72 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNA--FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDR----------LRPL 72 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSS--CCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTT----------TGGG
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCC--CCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHH----------HHHH
Confidence 4799999999999999999999753 2344555666655556667665 455999999755421 1123
Q ss_pred HHhhccEEEEEeccchh-----------hHHh---cCCcEEEEEeCccCCCCcCchHHHHHH-HHhcHHHHHhhCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEV-----------RAVE---EGRGLVVIVNKMDLLSGRQNSALYKRV-KEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~-----------~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 466 (607)
++..+|++++|+|++++ .... .++|+++|+||+|+.+.....+.+... .+.+..+....++...+
T Consensus 73 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 152 (186)
T 1mh1_A 73 SYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 152 (186)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred hccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcC
Confidence 56789999999999875 0111 289999999999997642111111000 00111111111111123
Q ss_pred -CCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 467 -IPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 467 -~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
.+++++||++|.|++++|+.+.+.+
T Consensus 153 ~~~~~~~Sa~~g~gi~~l~~~l~~~~ 178 (186)
T 1mh1_A 153 AVKYLECSALTQRGLKTVFDEAIRAV 178 (186)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CcEEEEecCCCccCHHHHHHHHHHHH
Confidence 3899999999999999999888754
No 232
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.79 E-value=8.1e-20 Score=176.40 Aligned_cols=158 Identities=11% Similarity=0.126 Sum_probs=109.5
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC--CeeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG--DLRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+++|.+|||||||+|+|++.... ..... ++.+.....+..+ ...+.+|||||+.. +....
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~ 93 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVP--TVFENYTASFEIDTQRIELSLWDTSGSPY----------YDNVR 93 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCC--CSEEEEEEEEESSSSEEEEEEEEECCSGG----------GTTTG
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCC--CCcCC--ccceeEEEEEEECCEEEEEEEEeCCCcHh----------hhHHH
Confidence 368999999999999999999987652 11111 2222222333333 36799999999873 22233
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH--HHHHHHHhhCCCCcEEEEecCCCcccC------------CcCcHHHHHHHHHh
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHN------------GTGSLAGAAAESLM 263 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~D~~~~------------~~~~~~~~~~~~~~ 263 (607)
..++..+|++|+|+|++++.+..+. .+...+++..++.|+++|+||+|+... +....++....+..
T Consensus 94 ~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 173 (205)
T 1gwn_A 94 PLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQ 173 (205)
T ss_dssp GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHH
T ss_pred HhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHH
Confidence 4567899999999999986655542 244455555568999999999999752 22333444444555
Q ss_pred cCCCCcEEeecC-CCCChHHHHHHhccch
Q 007334 264 LGFGDPIAISAE-TGLGMTELYEALRPSV 291 (607)
Q Consensus 264 ~~~~~~i~iSA~-~g~gi~eL~~~i~~~l 291 (607)
++...++++||+ +|.|++++++.|.+.+
T Consensus 174 ~~~~~~~e~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 174 IGAATYIECSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp HTCSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeeeccCCcCHHHHHHHHHHHH
Confidence 564478999999 6899999999987654
No 233
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.79 E-value=2.2e-19 Score=171.85 Aligned_cols=159 Identities=13% Similarity=0.129 Sum_probs=101.5
Q ss_pred cCCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEE---cCeEEEEEecCCCcccccccCcchhHHHH
Q 007334 322 KLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEY---QGRTVYLVDTAGWLQREKEKGPASLSVMQ 398 (607)
Q Consensus 322 ~~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~ 398 (607)
...+||+++|.+|||||||++++.+... ..+..+++.........+ ....+.||||||..+...... .
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-------~ 88 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHKMS--PNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTF-------D 88 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSCCC--GGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTC-------C
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhcCC--CcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhh-------h
Confidence 4568999999999999999999987522 223333222221222222 336889999999765421100 0
Q ss_pred HHHHHhhccEEEEEeccchh-------------hH--HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCC
Q 007334 399 SRKNLMRAHVVALVLDAEEV-------------RA--VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQ 463 (607)
Q Consensus 399 ~~~~i~~ad~~llViD~~~~-------------~~--~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (607)
...+++.+|++|+|+|+++. .. ...+.|+++|+||+|+.+..........+......++.+....
T Consensus 89 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~ 168 (196)
T 3llu_A 89 YEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLE 168 (196)
T ss_dssp HHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred cccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhh
Confidence 13567889999999999874 00 1247899999999999864321111122222222333333322
Q ss_pred CCCCCEEEcccCCCCCHHHHHHHHHHH
Q 007334 464 VTGIPVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 464 ~~~~~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
..+++++++||++ .|++++|..+.+.
T Consensus 169 ~~~~~~~e~Sa~~-~~v~~~f~~l~~~ 194 (196)
T 3llu_A 169 KLHLSFYLTSIYD-HSIFEAFSKVVQK 194 (196)
T ss_dssp TSCEEEEEECTTS-THHHHHHHHHHHH
T ss_pred cCCcceEEEEech-hhHHHHHHHHHHH
Confidence 4567999999999 9999999998764
No 234
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.2e-19 Score=177.48 Aligned_cols=148 Identities=20% Similarity=0.219 Sum_probs=99.0
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++.... ....++++.+.....+.+++ ..+.||||||+.+.... ..
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------~~ 80 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFN-MDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAI----------TS 80 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCC-C------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCC----------CG
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCC-CCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhh----------HH
Confidence 3589999999999999999999986532 23345555566566677777 47889999997654211 12
Q ss_pred HHHhhccEEEEEeccchhh-----------HH---hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEVR-----------AV---EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~-----------~~---~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
.+++.+|++|+|+|+++.. .. ..++|+++|+||+|+.+...... +.. .++.+ ..+
T Consensus 81 ~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~--~~~-----~~~~~----~~~ 149 (223)
T 3cpj_B 81 AYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPT--EES-----KTFAQ----ENQ 149 (223)
T ss_dssp GGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCH--HHH-----HHHHH----HTT
T ss_pred HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCH--HHH-----HHHHH----HcC
Confidence 4567899999999998751 11 13789999999999975432211 111 11111 125
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
++++++||++|.|++++|+.+.+.+.
T Consensus 150 ~~~~~~Sa~~~~gi~~l~~~l~~~i~ 175 (223)
T 3cpj_B 150 LLFTETSALNSENVDKAFEELINTIY 175 (223)
T ss_dssp CEEEECCCC-CCCHHHHHHHHHHHHT
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999987764
No 235
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.79 E-value=1.2e-19 Score=173.01 Aligned_cols=157 Identities=20% Similarity=0.195 Sum_probs=103.3
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++.. ....+.+|+.+.....+.+++ ..+.||||||+.+... ...
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~ 84 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDA--FPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDR----------LRP 84 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSS--CCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTT----------TGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhH----------HHH
Confidence 35899999999999999999999763 334556666666656666666 4678999999765421 112
Q ss_pred HHHhhccEEEEEeccchhh-----------HH---hcCCcEEEEEeCccCCCCcCchHHHHHH-HHhcHHHHHhhCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEVR-----------AV---EEGRGLVVIVNKMDLLSGRQNSALYKRV-KEAVPQEIQTVIPQVT 465 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~-----------~~---~~~~p~ivv~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 465 (607)
.+++.+|++|+|+|+++.. .. ..++|+++|+||+|+.+.....+.+... .+.+..+....++...
T Consensus 85 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 164 (194)
T 2atx_A 85 LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEI 164 (194)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHH
T ss_pred HhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHc
Confidence 4567899999999998750 11 1279999999999997642100000000 0001111111111111
Q ss_pred CC-CEEEcccCCCCCHHHHHHHHHHHH
Q 007334 466 GI-PVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 466 ~~-~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+. +++++||++|.|++++|+.+.+.+
T Consensus 165 ~~~~~~~~Sa~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 165 GACCYVECSALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp TCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 33 899999999999999999988754
No 236
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.79 E-value=1.4e-19 Score=172.43 Aligned_cols=149 Identities=19% Similarity=0.184 Sum_probs=97.2
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCC-------CCcee--eeEEEEE-EE--cCeEEEEEecCCCcccccccC
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPE-------AGLTR--DSVRVHF-EY--QGRTVYLVDTAGWLQREKEKG 390 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~-------~gtT~--~~~~~~~-~~--~~~~~~liDTpG~~~~~~~~~ 390 (607)
..+||+++|.+|||||||++.+.+.......+. ...|. +.....+ .. ....+.||||||+.+..
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---- 88 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN---- 88 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS----
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH----
Confidence 358999999999999999988876532211110 01111 1111111 12 23468899999965432
Q ss_pred cchhHHHHHHHHHhhccEEEEEeccchh----------h---HH------hcCCcEEEEEeCccCCCCcCchHHHHHHHH
Q 007334 391 PASLSVMQSRKNLMRAHVVALVLDAEEV----------R---AV------EEGRGLVVIVNKMDLLSGRQNSALYKRVKE 451 (607)
Q Consensus 391 ~~~~~~~~~~~~i~~ad~~llViD~~~~----------~---~~------~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~ 451 (607)
.....+++.+|++|+|+|++++ . .. ..++|+++|+||+|+.+.....
T Consensus 89 ------~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~-------- 154 (198)
T 3t1o_A 89 ------ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVE-------- 154 (198)
T ss_dssp ------HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHH--------
T ss_pred ------HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHH--------
Confidence 1234578899999999999842 0 11 1578999999999997652211
Q ss_pred hcHHHHHhhCCCCCCC-CEEEcccCCCCCHHHHHHHHHHHHHHH
Q 007334 452 AVPQEIQTVIPQVTGI-PVVFTSALEGRGRIAVMHQVIDTYQKW 494 (607)
Q Consensus 452 ~~~~~~~~~~~~~~~~-~~v~iSA~~g~gv~~l~~~i~~~~~~~ 494 (607)
+..+.+ ...++ +++++||++|.|++++|+.+.+.+.+.
T Consensus 155 ----~~~~~~-~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~ 193 (198)
T 3t1o_A 155 ----MVRAVV-DPEGKFPVLEAVATEGKGVFETLKEVSRLVLAR 193 (198)
T ss_dssp ----HHHHHH-CTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred ----HHHHHH-HhcCCceEEEEecCCCcCHHHHHHHHHHHHHHH
Confidence 111111 22355 999999999999999999998876543
No 237
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.79 E-value=5.9e-19 Score=171.03 Aligned_cols=154 Identities=19% Similarity=0.190 Sum_probs=100.0
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC---CeeEEEecCCCCccccCchhHHHHHHH-
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG---DLRFKVLDSAGLETEATSGSILDRTAG- 195 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~- 195 (607)
.++|+++|.+|||||||+|+|++..+ ....+. ++.+... +.++ +..+.+|||||+. ++..
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~~--~~~~~~--~~~~~~~--~~~~~~~~~~~~i~Dt~G~~----------~~~~~ 70 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQY--RDTQTS--ITDSSAI--YKVNNNRGNSLTLIDLPGHE----------SLRFQ 70 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSCC--CCBCCC--CSCEEEE--EECSSTTCCEEEEEECCCCH----------HHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc--ccccCC--cceeeEE--EEecCCCccEEEEEECCCCh----------hHHHH
Confidence 57899999999999999999998764 222332 4444333 4444 6789999999998 4444
Q ss_pred HHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHH----h---hCCCCcEEEEecCCCcccCCcCcH--HHHHHHHH----
Q 007334 196 MTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLR----K---HAPQIKPIVAMNKCESLHNGTGSL--AGAAAESL---- 262 (607)
Q Consensus 196 ~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~----~---~~~~~p~ilV~NK~D~~~~~~~~~--~~~~~~~~---- 262 (607)
.+..++..+|++++|+|+++.. .....+.+++. . ...+.|+++|+||+|+........ ......+.
T Consensus 71 ~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~ 149 (214)
T 2fh5_B 71 LLDRFKSSARAVVFVVDSAAFQ-REVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRV 149 (214)
T ss_dssp HHHHHGGGEEEEEEEEETTTHH-HHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCEEEEEEECCCcC-HHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhc
Confidence 4566799999999999998621 11122333322 2 134689999999999986543111 00111111
Q ss_pred -----------------hcC-------------CCCcEEeecCCC------CChHHHHHHhccc
Q 007334 263 -----------------MLG-------------FGDPIAISAETG------LGMTELYEALRPS 290 (607)
Q Consensus 263 -----------------~~~-------------~~~~i~iSA~~g------~gi~eL~~~i~~~ 290 (607)
..+ .-.++++||++| .|+++++++|.+.
T Consensus 150 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 150 TRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp HCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred cchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 011 114689999999 9999999998753
No 238
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.79 E-value=1.4e-19 Score=192.52 Aligned_cols=153 Identities=29% Similarity=0.370 Sum_probs=111.4
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe-EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR-TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~-~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
..++|+++|++|+|||||+|+|++.+...+++++|+|.+.....+.+.+. .+.||||||+.++.. ........+..
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~---l~~~~~~~~~~ 109 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGE---LGRLRVEKARR 109 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCT---TCCCCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccc---hhHHHHHHHHH
Confidence 35799999999999999999999987777889999999999998888876 899999999877631 11223355677
Q ss_pred HHhhccEEEEEeccchh--------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcc
Q 007334 402 NLMRAHVVALVLDAEEV--------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTS 473 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~--------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iS 473 (607)
++..+|++|+|+|++.. ...+.++|+|+|+||+|+...... +..+.+....+++++++|
T Consensus 110 ~l~~aD~vllVvD~~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~-------------~~~~~l~~~~g~~v~~vS 176 (423)
T 3qq5_A 110 VFYRADCGILVTDSAPTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAE-------------ELKGLYESRYEAKVLLVS 176 (423)
T ss_dssp HHTSCSEEEEECSSSCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCT-------------HHHHHSSCCTTCCCCCCS
T ss_pred HHhcCCEEEEEEeCCChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHH-------------HHHHHHHHHcCCCEEEEE
Confidence 88899999999999432 233458999999999999876432 122334445578999999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q 007334 474 ALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 474 A~~g~gv~~l~~~i~~~~ 491 (607)
|++|.|++++|+.|.+.+
T Consensus 177 Aktg~gI~eL~~~L~~~l 194 (423)
T 3qq5_A 177 ALQKKGFDDIGKTISEIL 194 (423)
T ss_dssp SCCTTSTTTHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHhh
Confidence 999999999999998876
No 239
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.79 E-value=5.6e-19 Score=183.08 Aligned_cols=149 Identities=19% Similarity=0.194 Sum_probs=106.1
Q ss_pred cCCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 322 KLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 322 ~~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
...++|+|+|.+|||||||+|+|++.... ...| |++.....+.+.+..+.||||||..+... ....
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~--~~~p--T~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----------~~~~ 228 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRP----------LWRH 228 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCE--EEEE--ETTEEEEEEEETTEEEEEEECC-----CC----------SHHH
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCC--Cccc--ccceEEEEEecCcEEEEEEECCCCHhHHH----------HHHH
Confidence 34689999999999999999999987533 2333 44455566778899999999999654421 1345
Q ss_pred HHhhccEEEEEeccchh-----------hHH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~-----------~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
+++.+|++|+|+|+++. ... ..++|+|+|+||+|+.+..... .+...+........+
T Consensus 229 ~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~--------~i~~~~~~~~~~~~~ 300 (329)
T 3o47_A 229 YFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAA--------EITDKLGLHSLRHRN 300 (329)
T ss_dssp HHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHH--------HHHHHHTCTTCCSSC
T ss_pred HhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHH--------HHHHHhchhhhhcCC
Confidence 67889999999999764 111 1378999999999998754321 122333333334456
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
++++++||++|.|++++|+.|.+.+.
T Consensus 301 ~~~~~vSAk~g~gi~el~~~l~~~l~ 326 (329)
T 3o47_A 301 WYIQATCATSGDGLYEGLDWLSNQLR 326 (329)
T ss_dssp EEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCcCHHHHHHHHHHHHH
Confidence 78999999999999999999987653
No 240
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.79 E-value=3.1e-19 Score=174.09 Aligned_cols=147 Identities=16% Similarity=0.105 Sum_probs=105.8
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcC-CceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQE-DRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~-~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
..++|+++|.+|||||||+|+|+.. ....+.+++|+|.......+...+..+.||||||..+... ....
T Consensus 14 ~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------~~~~ 83 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGG----------LRDG 83 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSC----------CCHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhH----------HHHH
Confidence 4589999999999999999996543 2345678888888776655444456788999999654321 1124
Q ss_pred HHhhccEEEEEeccchhh----------H---HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEVR----------A---VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~~----------~---~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
+++.+|++|+|+|+++.. . ...++|+++|+||+|+.+.....+. .. +.+ ..+++
T Consensus 84 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~-~~--------~~~----~~~~~ 150 (221)
T 3gj0_A 84 YYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKS-IV--------FHR----KKNLQ 150 (221)
T ss_dssp HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGG-CC--------HHH----HHTCE
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHH-HH--------HHH----HcCCE
Confidence 677899999999999861 1 1138899999999999765322111 00 000 12568
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
++++||++|.|++++|+.+.+.+.
T Consensus 151 ~~~~Sa~~~~gi~~l~~~l~~~l~ 174 (221)
T 3gj0_A 151 YYDISAKSNYNFEKPFLWLARKLI 174 (221)
T ss_dssp EEECBGGGTBTTTHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999998877653
No 241
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.66 E-value=6.8e-21 Score=183.40 Aligned_cols=157 Identities=15% Similarity=0.118 Sum_probs=108.9
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+++|.+|||||||+|+|++.... ..... ++.+.....+..++ ..+.+|||||+. ++...+
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~ 95 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIP--TVFDNYSANVMVDGKPVNLGLWDTAGQE----------DYDRLR 95 (204)
Confidence 468999999999999999999976542 22222 44444333333333 457799999987 444555
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH--HHHHHHHhhCCCCcEEEEecCCCcccCCc------------CcHHHHHHHHHh
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHNGT------------GSLAGAAAESLM 263 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~D~~~~~~------------~~~~~~~~~~~~ 263 (607)
..++..+|++++|+|++++.+..+. .+...+....++.|+++|+||+|+..... .........+..
T Consensus 96 ~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 175 (204)
T 3th5_A 96 PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKE 175 (204)
Confidence 6678899999999999987766653 34444444444789999999999976431 111122222333
Q ss_pred cCCCCcEEeecCCCCChHHHHHHhccc
Q 007334 264 LGFGDPIAISAETGLGMTELYEALRPS 290 (607)
Q Consensus 264 ~~~~~~i~iSA~~g~gi~eL~~~i~~~ 290 (607)
.+..+++++||++|.|++++++.|.+.
T Consensus 176 ~~~~~~~~vSA~~g~gi~~l~~~l~~~ 202 (204)
T 3th5_A 176 IGAVKYLECSALTQRGLKTVFDEAIRA 202 (204)
Confidence 444367999999999999999988754
No 242
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.79 E-value=2.4e-19 Score=183.26 Aligned_cols=181 Identities=17% Similarity=0.175 Sum_probs=119.4
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCce-----eecCCCC----------------------ceeee--------------
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRV-----LVGPEAG----------------------LTRDS-------------- 362 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~-----~~~~~~g----------------------tT~~~-------------- 362 (607)
.++|+++|.+|||||||+|+|+|.... .++..|+ +|++.
T Consensus 26 ~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~g 105 (299)
T 2aka_B 26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 105 (299)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCS
T ss_pred CCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhcc
Confidence 479999999999999999999988654 4455564 44431
Q ss_pred ---------EEEEEEEc-CeEEEEEecCCCccccc---ccCcchhHHHHHHHHHhhccEEE-EEeccchh----h---H-
Q 007334 363 ---------VRVHFEYQ-GRTVYLVDTAGWLQREK---EKGPASLSVMQSRKNLMRAHVVA-LVLDAEEV----R---A- 420 (607)
Q Consensus 363 ---------~~~~~~~~-~~~~~liDTpG~~~~~~---~~~~~~~~~~~~~~~i~~ad~~l-lViD~~~~----~---~- 420 (607)
....+... +..+.||||||+.+... .+..+......+..+++.+|.++ +|+|++.. . .
T Consensus 106 ~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~ 185 (299)
T 2aka_B 106 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIA 185 (299)
T ss_dssp STTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHH
T ss_pred cCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHH
Confidence 11111121 36899999999865321 11111233345667888888766 69998763 1 1
Q ss_pred ---HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCC--CCCCEEEcccCCCCCHHHHHHHHHHHHH---
Q 007334 421 ---VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQV--TGIPVVFTSALEGRGRIAVMHQVIDTYQ--- 492 (607)
Q Consensus 421 ---~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~iSA~~g~gv~~l~~~i~~~~~--- 492 (607)
...++|+++|+||+|+.+..... .+ .+...+... .+.+++++||++|.|++++++.+.+...
T Consensus 186 ~~~~~~~~~~i~V~NK~Dl~~~~~~~--~~--------~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~~~~~ 255 (299)
T 2aka_B 186 KEVDPQGQRTIGVITKLDLMDEGTDA--RD--------VLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFFL 255 (299)
T ss_dssp HHHCTTCSSEEEEEECGGGSCTTCCC--HH--------HHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHHHHHH
T ss_pred HHhCCCCCeEEEEEEccccCCCCchH--HH--------HHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHHHHHh
Confidence 12478999999999998653211 01 111111111 2357899999999999999999876422
Q ss_pred ------HHhcCCChHHHHHHHHHHHHhC
Q 007334 493 ------KWCLRLPTSRLNRWLRKVMGRH 514 (607)
Q Consensus 493 ------~~~~~~~~~~l~~~l~~~~~~~ 514 (607)
.+..++++..+++++++.+..+
T Consensus 256 ~~~~~~~~~~r~~~~~l~~~l~~~l~~~ 283 (299)
T 2aka_B 256 SHPSYRHLADRMGTPYLQKVLNQQLTNH 283 (299)
T ss_dssp HCTTTGGGGGGCSHHHHHHHHHHHHHHH
T ss_pred cCCccccchhhhCHHHHHHHHHHHHHHH
Confidence 3456788899999998887643
No 243
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.79 E-value=4.6e-19 Score=171.49 Aligned_cols=151 Identities=17% Similarity=0.140 Sum_probs=104.2
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+++|++... ...+.+|+.+.....+.+++. .+.||||||+.+.... ..
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------~~ 75 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRL----------RP 75 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC--CSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC------------C
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHH----------HH
Confidence 358999999999999999999997642 345556666666656666664 7789999997654211 12
Q ss_pred HHHhhccEEEEEeccchhh-----------HH---hcCCcEEEEEeCccCCCCcCch------HHHHHHHHhcHHHHHhh
Q 007334 401 KNLMRAHVVALVLDAEEVR-----------AV---EEGRGLVVIVNKMDLLSGRQNS------ALYKRVKEAVPQEIQTV 460 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~-----------~~---~~~~p~ivv~NK~Dl~~~~~~~------~~~~~~~~~~~~~~~~~ 460 (607)
.+++.+|++|+|+|+++.. .. ..++|+++|+||+|+.+..... ...+.. .++.+.
T Consensus 76 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~-----~~~~~~ 150 (212)
T 2j0v_A 76 LSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQG-----EELRKQ 150 (212)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHH-----HHHHHH
T ss_pred hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHH-----HHHHHH
Confidence 3567899999999998751 11 1279999999999997642100 001111 111111
Q ss_pred CCCCCCCCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 461 IPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 461 ~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
+ ...+++++||++|.|++++|+.+.+.+.+
T Consensus 151 ~---~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 180 (212)
T 2j0v_A 151 I---GAAAYIECSSKTQQNVKAVFDTAIKVVLQ 180 (212)
T ss_dssp H---TCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred c---CCceEEEccCCCCCCHHHHHHHHHHHHhh
Confidence 1 12489999999999999999999887643
No 244
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=3.1e-19 Score=172.29 Aligned_cols=156 Identities=19% Similarity=0.191 Sum_probs=98.8
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.++|+++|.+|||||||+|+|++.... ..+.+++.+.....+..++. .+.||||||+.+... ....
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------~~~~ 92 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFP--EVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDR----------LRPL 92 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC---------CCEEEEEEEETTEEEEEEEEECTTCTTCTT----------TGGG
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCC--CcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHH----------HHHh
Confidence 479999999999999999999986532 22334444444444666664 678999999755421 1123
Q ss_pred HHhhccEEEEEeccchhh-----------HH---hcCCcEEEEEeCccCCCCcCchHHHHHHH-HhcHHHHHhhCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEVR-----------AV---EEGRGLVVIVNKMDLLSGRQNSALYKRVK-EAVPQEIQTVIPQVTG 466 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~~-----------~~---~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 466 (607)
++..+|++|+|+|+++.. .. ..++|+++|+||+|+.+.....+.+..+. +.+..+....++...+
T Consensus 93 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 172 (207)
T 2fv8_A 93 SYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQ 172 (207)
T ss_dssp GCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcC
Confidence 567899999999998751 11 13899999999999976522111111100 0111111111111123
Q ss_pred C-CEEEcccCCCCCHHHHHHHHHHHH
Q 007334 467 I-PVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 467 ~-~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
. +++++||++|.|++++|+.|.+.+
T Consensus 173 ~~~~~~~SA~~g~gi~el~~~l~~~i 198 (207)
T 2fv8_A 173 AYDYLECSAKTKEGVREVFETATRAA 198 (207)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 3 899999999999999999998765
No 245
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.78 E-value=1.2e-18 Score=187.48 Aligned_cols=153 Identities=18% Similarity=0.188 Sum_probs=113.9
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeecc------------------------------CCCCceeeeeEEEEeeeC
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYN------------------------------TPDDHVTRDIREGLAKLG 168 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~------------------------------~~~~~~T~~~~~~~~~~~ 168 (607)
...+|+++|++|+|||||+|+|++....+..+ ..| +|.+..+..+...
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~G--iTid~~~~~~~~~ 93 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKG--KTVEVGRAYFETE 93 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcC--ceEEEeEEEEecC
Confidence 35799999999999999999997653322221 134 8899988888889
Q ss_pred CeeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCC-------HhHHHHHHHHHhhCCCCc-EEEE
Q 007334 169 DLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLH-------PLDLEVGKWLRKHAPQIK-PIVA 240 (607)
Q Consensus 169 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~-------~~~~~~~~~l~~~~~~~p-~ilV 240 (607)
+..+.+|||||+. ++...+..++..+|++|+|+|++++.. .+..+.+..+... +.| +|+|
T Consensus 94 ~~~~~iiDTPGh~----------~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~--~v~~iIvv 161 (439)
T 3j2k_7 94 KKHFTILDAPGHK----------SFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA--GVKHLIVL 161 (439)
T ss_pred CeEEEEEECCChH----------HHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHc--CCCeEEEE
Confidence 9999999999998 677777888999999999999999875 3555555555555 667 8999
Q ss_pred ecCCCcccCCc--Cc----HHHHHHHHHhcCCC-----CcEEeecCCCCChHHHHH
Q 007334 241 MNKCESLHNGT--GS----LAGAAAESLMLGFG-----DPIAISAETGLGMTELYE 285 (607)
Q Consensus 241 ~NK~D~~~~~~--~~----~~~~~~~~~~~~~~-----~~i~iSA~~g~gi~eL~~ 285 (607)
+||+|+..... .. ..+....+..+++. +++++||++|.|++++.+
T Consensus 162 iNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 162 INKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred eecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 99999864211 00 11122233344542 579999999999999765
No 246
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.78 E-value=1.4e-18 Score=186.92 Aligned_cols=152 Identities=20% Similarity=0.226 Sum_probs=108.2
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceee------------------------------cCCCCceeeeEEEEEEEcCe
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLV------------------------------GPEAGLTRDSVRVHFEYQGR 372 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~------------------------------~~~~gtT~~~~~~~~~~~~~ 372 (607)
..++|+++|++|+|||||+|+|++....+. ...+|+|.+.....+++++.
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~ 95 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKK 95 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCCe
Confidence 458999999999999999999976532222 22368999998888999999
Q ss_pred EEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh-----------------hHHhcCCc-EEEEEeCc
Q 007334 373 TVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV-----------------RAVEEGRG-LVVIVNKM 434 (607)
Q Consensus 373 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~-----------------~~~~~~~p-~ivv~NK~ 434 (607)
.+.||||||+.++. ..+..++..||++|+|+|++++ .....++| +|+|+||+
T Consensus 96 ~~~iiDTPGh~~f~----------~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~ 165 (439)
T 3j2k_7 96 HFTILDAPGHKSFV----------PNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKM 165 (439)
T ss_pred EEEEEECCChHHHH----------HHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecC
Confidence 99999999975441 3345677889999999999864 12235777 99999999
Q ss_pred cCCCCcCchHHHHHHHHhcHHHHHhhCCC--CCCCCEEEcccCCCCCHHHHHH
Q 007334 435 DLLSGRQNSALYKRVKEAVPQEIQTVIPQ--VTGIPVVFTSALEGRGRIAVMH 485 (607)
Q Consensus 435 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~iSA~~g~gv~~l~~ 485 (607)
|+.........++.+.+.+..-+. .+.. ...++++++||++|.|++++++
T Consensus 166 Dl~~~~~~~~~~~~i~~~~~~~l~-~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 166 DDPTVNWSNERYEECKEKLVPFLK-KVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred CCcccchHHHHHHHHHHHHHHHHH-HhcccccCCeeEEEeeccCCcccccccc
Confidence 997542222233333333322221 1111 1257899999999999998765
No 247
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.78 E-value=3.5e-19 Score=171.12 Aligned_cols=157 Identities=18% Similarity=0.168 Sum_probs=100.5
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++... .....++++.+. ...+.+++. .+.||||||..+.... ..
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~----------~~ 91 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENY-IADIEVDGKQVELALWDTAGQEDYDRL----------RP 91 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC-CSSCCCSSCCCC-EEEEEETTEEEEEEEECCCCSGGGTTT----------GG
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcC-CcccCCcccceE-EEEEEECCEEEEEEEEECCCchhHHHH----------HH
Confidence 357999999999999999999997643 222233333333 334566664 6789999997544211 11
Q ss_pred HHHhhccEEEEEeccchh-----------hHH---hcCCcEEEEEeCccCCCCcCchHHHHHHH-HhcHHHHHhhCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEV-----------RAV---EEGRGLVVIVNKMDLLSGRQNSALYKRVK-EAVPQEIQTVIPQVT 465 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~-----------~~~---~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 465 (607)
.+++.+|++|+|+|+++. ... ..++|+++|+||+|+.+.....+.+.... +.+..+....++...
T Consensus 92 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 171 (201)
T 2gco_A 92 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRI 171 (201)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHT
T ss_pred HhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhC
Confidence 356789999999999875 011 13899999999999986522111110000 011111111111112
Q ss_pred CC-CEEEcccCCCCCHHHHHHHHHHHH
Q 007334 466 GI-PVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 466 ~~-~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+. +++++||++|.|++++|+.|.+.+
T Consensus 172 ~~~~~~~~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 172 SAFGYLECSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp TCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 33 899999999999999999988754
No 248
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.78 E-value=7.4e-20 Score=176.00 Aligned_cols=149 Identities=21% Similarity=0.227 Sum_probs=71.9
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCce-eeeEEEEEEEcC----eEEEEEecCCCcccccccCcchhHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLT-RDSVRVHFEYQG----RTVYLVDTAGWLQREKEKGPASLSVM 397 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT-~~~~~~~~~~~~----~~~~liDTpG~~~~~~~~~~~~~~~~ 397 (607)
..++|+++|.+|||||||+|+|++........+.+|+ .+.....+.+++ ..+.||||||+.+.. .
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~ 88 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYK----------E 88 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHH----------H
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHH----------H
Confidence 3579999999999999999999976433444444444 366666677775 478899999964331 1
Q ss_pred HHHHHHhhccEEEEEeccchh----------hHH-h------cCCcEEEEEeCccCCC-CcCch-HHHHHHHHhcHHHHH
Q 007334 398 QSRKNLMRAHVVALVLDAEEV----------RAV-E------EGRGLVVIVNKMDLLS-GRQNS-ALYKRVKEAVPQEIQ 458 (607)
Q Consensus 398 ~~~~~i~~ad~~llViD~~~~----------~~~-~------~~~p~ivv~NK~Dl~~-~~~~~-~~~~~~~~~~~~~~~ 458 (607)
....+++.+|++|+|+|++++ ... . .++|+++|+||+|+.+ ..... +.... +.
T Consensus 89 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~--------~~ 160 (208)
T 2yc2_C 89 QISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQD--------WA 160 (208)
T ss_dssp HHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHH--------HH
T ss_pred HHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHH--------HH
Confidence 233566789999999999876 011 1 4789999999999976 32211 11111 11
Q ss_pred hhCCCCCCCCEEEcccCC-CCCHHHHHHHHHHHHHH
Q 007334 459 TVIPQVTGIPVVFTSALE-GRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 459 ~~~~~~~~~~~v~iSA~~-g~gv~~l~~~i~~~~~~ 493 (607)
+. .+++++++||++ |.|++++|+.|.+.+.+
T Consensus 161 ~~----~~~~~~~~Sa~~~~~gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 161 TT----NTLDFFDVSANPPGKDADAPFLSIATTFYR 192 (208)
T ss_dssp HH----TTCEEEECCC-------CHHHHHHHHHHHH
T ss_pred HH----cCCEEEEeccCCCCcCHHHHHHHHHHHHHH
Confidence 11 247899999999 99999999999886643
No 249
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.78 E-value=1e-18 Score=169.85 Aligned_cols=159 Identities=15% Similarity=0.108 Sum_probs=100.5
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++... ...+..|+.+.....+..++ ..+.||||||..+... ...
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----------~~~ 93 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCY--PETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDN----------VRP 93 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTT----------TGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCC--CCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHH----------HHH
Confidence 458999999999999999999997642 33444444444444444444 4678999999755421 112
Q ss_pred HHHhhccEEEEEeccchhh--------------HHhcCCcEEEEEeCccCCCCcCchHHHHHH-HHhcHHHHHhhCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEVR--------------AVEEGRGLVVIVNKMDLLSGRQNSALYKRV-KEAVPQEIQTVIPQVT 465 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~--------------~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 465 (607)
.+++.+|++|+|+|+++.. ....+.|+++|+||+|+.+........... .+.+..+....++...
T Consensus 94 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 173 (214)
T 3q3j_B 94 LCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQL 173 (214)
T ss_dssp GGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHH
T ss_pred HHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHc
Confidence 3567899999999998751 112378999999999997531000000000 0001111111111112
Q ss_pred CC-CEEEcccCCCCC-HHHHHHHHHHHHHH
Q 007334 466 GI-PVVFTSALEGRG-RIAVMHQVIDTYQK 493 (607)
Q Consensus 466 ~~-~~v~iSA~~g~g-v~~l~~~i~~~~~~ 493 (607)
++ +++++||++|.| ++++|+.+.+.+..
T Consensus 174 ~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~ 203 (214)
T 3q3j_B 174 GAEIYLEGSAFTSEKSIHSIFRTASMLCLN 203 (214)
T ss_dssp TCSEEEECCTTTCHHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEeccCCCcccHHHHHHHHHHHHhc
Confidence 55 899999999998 99999999887643
No 250
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.78 E-value=2.4e-19 Score=168.57 Aligned_cols=148 Identities=19% Similarity=0.169 Sum_probs=90.8
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+++|++.. ....+.+|+.+.....+..++. .+.||||||+.+... ...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------~~~ 74 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNT--FPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNR----------LRP 74 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSC--CC----------CBCCCC-------CEEECCCC-CTTTT----------TGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhh----------hHH
Confidence 35899999999999999999999764 2334445544433333334443 456999999755421 112
Q ss_pred HHHhhccEEEEEeccchh-----------hHHh---cCCcEEEEEeCccCCCCcCchH--------HHHHHHHhcHHHHH
Q 007334 401 KNLMRAHVVALVLDAEEV-----------RAVE---EGRGLVVIVNKMDLLSGRQNSA--------LYKRVKEAVPQEIQ 458 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~-----------~~~~---~~~p~ivv~NK~Dl~~~~~~~~--------~~~~~~~~~~~~~~ 458 (607)
.+++.+|++++|+|+++. .... .++|+++|+||+|+.+...... ..+.. .++.
T Consensus 75 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~-----~~~~ 149 (182)
T 3bwd_D 75 LSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQG-----EELK 149 (182)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHH-----HHHH
T ss_pred hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHH-----HHHH
Confidence 456789999999999865 0111 3799999999999976421100 00110 1111
Q ss_pred hhCCCCCC-CCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 459 TVIPQVTG-IPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 459 ~~~~~~~~-~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+. .+ .+++++||++|.|++++|+.+.+.+
T Consensus 150 ~~----~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 150 KL----IGAPAYIECSSKSQENVKGVFDAAIRVV 179 (182)
T ss_dssp HH----HTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HH----cCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 11 13 4899999999999999999987753
No 251
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.78 E-value=1.3e-18 Score=173.05 Aligned_cols=171 Identities=14% Similarity=0.110 Sum_probs=115.3
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCc--hhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATS--GSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~--~~~~~~~~~~~ 197 (607)
..+|+|||.||||||||+|+|++.+.......+ ..+|++.......+.+..+.+|||||+...... +..........
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~-~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~ 99 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQRRFFSRLGA-TSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCY 99 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSCCC----------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHHH
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCCCccccCCC-CCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHHH
Confidence 468999999999999999999998765544322 227888888888889999999999999733211 11111222222
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhC----CCCcEEEEecCCCcccCCcCcH------HHHHHHHHhcCCC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHA----PQIKPIVAMNKCESLHNGTGSL------AGAAAESLMLGFG 267 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~----~~~p~ilV~NK~D~~~~~~~~~------~~~~~~~~~~~~~ 267 (607)
......+|++|+|+|++. .+..+..+.+++.+.. .+.|+|+|.||+|+........ ..........|.
T Consensus 100 ~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~- 177 (247)
T 3lxw_A 100 LLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECGG- 177 (247)
T ss_dssp HHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTT-
T ss_pred HhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcCC-
Confidence 334589999999999985 7777777778887642 2579999999999975321111 112233334454
Q ss_pred CcEEeecCC-----CCChHHHHHHhccchHH
Q 007334 268 DPIAISAET-----GLGMTELYEALRPSVED 293 (607)
Q Consensus 268 ~~i~iSA~~-----g~gi~eL~~~i~~~l~~ 293 (607)
.++.+++.. +.|+++|++.|.+.+++
T Consensus 178 ~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 178 RVCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp CEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 455555443 68999999999887765
No 252
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.78 E-value=1.2e-18 Score=180.55 Aligned_cols=154 Identities=18% Similarity=0.163 Sum_probs=109.0
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
..+|+|+|.+|||||||+|+|++..+. ... .|.+.....+...+..+.||||||++ .+...+..
T Consensus 165 ~~kI~ivG~~~vGKSsLl~~l~~~~~~--~~~----pT~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~ 228 (329)
T 3o47_A 165 EMRILMVGLDAAGKTTILYKLKLGEIV--TTI----PTIGFNVETVEYKNISFTVWDVGGQD----------KIRPLWRH 228 (329)
T ss_dssp SEEEEEEESTTSSHHHHHHHTCSSCCE--EEE----EETTEEEEEEEETTEEEEEEECC---------------CCSHHH
T ss_pred cceEEEECCCCccHHHHHHHHhCCCCC--Ccc----cccceEEEEEecCcEEEEEEECCCCH----------hHHHHHHH
Confidence 458999999999999999999987653 222 35556667777889999999999987 34445567
Q ss_pred HhhccCEEEEEEecCCCCCHhHH--HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCC-----CCcEE
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGF-----GDPIA 271 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~-----~~~i~ 271 (607)
++..+|++|+|+|+++..+.... .+...+... ..+.|+++|+||+|+..... ....... ..... .++++
T Consensus 229 ~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~--~~~i~~~-~~~~~~~~~~~~~~~ 305 (329)
T 3o47_A 229 YFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN--AAEITDK-LGLHSLRHRNWYIQA 305 (329)
T ss_dssp HHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHH-HTCTTCCSSCEEEEE
T ss_pred HhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC--HHHHHHH-hchhhhhcCCCEEEE
Confidence 78999999999999987776652 233333322 24789999999999986532 1222212 11111 14789
Q ss_pred eecCCCCChHHHHHHhccchH
Q 007334 272 ISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 272 iSA~~g~gi~eL~~~i~~~l~ 292 (607)
+||++|.|+++|++.|.+.+.
T Consensus 306 vSAk~g~gi~el~~~l~~~l~ 326 (329)
T 3o47_A 306 TCATSGDGLYEGLDWLSNQLR 326 (329)
T ss_dssp CBTTTTBTHHHHHHHHHHHHT
T ss_pred EECCCCcCHHHHHHHHHHHHH
Confidence 999999999999999987654
No 253
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.78 E-value=1.3e-18 Score=178.05 Aligned_cols=155 Identities=25% Similarity=0.278 Sum_probs=111.5
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCc-ccccccCcchhHHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWL-QREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~-~~~~~~~~~~~~~~~~~~~i 403 (607)
..|+++|+||||||||+|+|++....++++.+++|++...+.+..++.++.+|||||+. ..... ........+..++
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~--l~~~~~~~~~~~l 86 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRA--INRLMNKAASSSI 86 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHH--HHHHHTCCTTSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhh--HHHHHHHHHHHHH
Confidence 47999999999999999999998877888999999998888888889999999999985 22100 0000011123456
Q ss_pred hhccEEEEEeccchh---------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEccc
Q 007334 404 MRAHVVALVLDAEEV---------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSA 474 (607)
Q Consensus 404 ~~ad~~llViD~~~~---------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA 474 (607)
..+|++++|+|+++. .....++|+++|+||+|+.... ....+.+ .++.+. ....+++++||
T Consensus 87 ~~~D~vl~Vvd~~~~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~~--~~~~~~l-----~~l~~~---~~~~~~i~iSA 156 (301)
T 1ega_A 87 GDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQEK--ADLLPHL-----QFLASQ---MNFLDIVPISA 156 (301)
T ss_dssp CCEEEEEEEEETTCCCHHHHHHHHHHHSSSSCEEEEEESTTTCCCH--HHHHHHH-----HHHHTT---SCCSEEEECCT
T ss_pred hcCCEEEEEEeCCCCCHHHHHHHHHHHhcCCCEEEEEECcccCccH--HHHHHHH-----HHHHHh---cCcCceEEEEC
Confidence 789999999998643 1122389999999999997621 1111111 122221 12237999999
Q ss_pred CCCCCHHHHHHHHHHHH
Q 007334 475 LEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 475 ~~g~gv~~l~~~i~~~~ 491 (607)
++|.|++++++.+...+
T Consensus 157 ~~g~~v~~l~~~i~~~l 173 (301)
T 1ega_A 157 ETGLNVDTIAAIVRKHL 173 (301)
T ss_dssp TTTTTHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHhC
Confidence 99999999999988654
No 254
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.77 E-value=1e-18 Score=174.96 Aligned_cols=173 Identities=10% Similarity=0.096 Sum_probs=120.8
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCc-hhHHHHHHHHH
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATS-GSILDRTAGMT 197 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~-~~~~~~~~~~~ 197 (607)
...+|+|+|.+|||||||+|+|++.........+. .+|++.......+.+..+.||||||+...... ......+....
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~ 99 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQ-TLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCY 99 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSC-CCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCC-ceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999999877544433332 27888888888889999999999999854322 12222334455
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCC---CCcEEEEec-CCCcccCCcCcH------HHHHHHHHhcCC-
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAP---QIKPIVAMN-KCESLHNGTGSL------AGAAAESLMLGF- 266 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~---~~p~ilV~N-K~D~~~~~~~~~------~~~~~~~~~~~~- 266 (607)
..++..+|++|+|+|++. .+..+..+.+++.+... ..|+++|+| |+|+........ .........++.
T Consensus 100 ~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~ 178 (260)
T 2xtp_A 100 LLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSKLVAACGGR 178 (260)
T ss_dssp HHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTC
T ss_pred HhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCccHHHHHHhcchHHHHHHHHHhCCe
Confidence 567889999999999985 67776667777776422 357777777 999985321000 011112223321
Q ss_pred ---CCcEEeecCCCCChHHHHHHhccchHH
Q 007334 267 ---GDPIAISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 267 ---~~~i~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
...+++||++|.|++++++.|.+.+..
T Consensus 179 ~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 179 ICAFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence 122889999999999999999887764
No 255
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.77 E-value=7.6e-19 Score=166.36 Aligned_cols=161 Identities=25% Similarity=0.338 Sum_probs=102.3
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCch-hHHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSG-SILDRTAGMTAN 199 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~-~~~~~~~~~~~~ 199 (607)
++|+++|.+|||||||+|+|++.... +...++ +|.+..... +. .+.+|||||+......+ .....+...+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~~--~t~~~~~~~--~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 74 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVR-RGKRPG--VTRKIIEIE--WK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVH 74 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCS-SSSSTT--CTTSCEEEE--ET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCc-cCCCCC--ccceeEEEe--cC--CEEEEECCCccccccCCHHHHHHHHHHHHH
Confidence 68999999999999999999987643 344555 666554433 22 79999999975322111 112234444455
Q ss_pred Hhhc-c---CEEEEEEecCCCCC-----------HhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhc
Q 007334 200 VLAK-T---QFAIFMIDVRSGLH-----------PLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLML 264 (607)
Q Consensus 200 ~~~~-a---d~vl~VvD~s~~~~-----------~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~ 264 (607)
++.. + +++++|+|.+.... ..+.++...+.. .+.|+++|+||+|+.... ..........+
T Consensus 75 ~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~---~~~~~~~~~~~ 149 (190)
T 2cxx_A 75 FIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE--LDIPTIVAVNKLDKIKNV---QEVINFLAEKF 149 (190)
T ss_dssp HHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH--TTCCEEEEEECGGGCSCH---HHHHHHHHHHH
T ss_pred HHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHh--cCCceEEEeehHhccCcH---HHHHHHHHHHh
Confidence 5554 4 56666666542111 111122333333 378999999999998643 12233334445
Q ss_pred CCC------CcEEeecCCCCChHHHHHHhccchHH
Q 007334 265 GFG------DPIAISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 265 ~~~------~~i~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
+.. .++++||++|.|++++++.|.+.+.+
T Consensus 150 ~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 184 (190)
T 2cxx_A 150 EVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE 184 (190)
T ss_dssp TCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcch
Confidence 542 35999999999999999999887754
No 256
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.77 E-value=6.1e-19 Score=182.64 Aligned_cols=159 Identities=16% Similarity=0.124 Sum_probs=117.2
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCee--EEEecCCCCccccCchhHHHHHHHH
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLR--FKVLDSAGLETEATSGSILDRTAGM 196 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~~~~~~ 196 (607)
...+|+++|.+|||||||+|++++... ...... ++.+.....+..++.. +.+|||||+.. +...
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~--~~~~~~--t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~ 219 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIP--TVFDNYSANVMVDGKPVNLGLWDTAGLED----------YDRL 219 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCC--CCSCCC--CSEEEEEEEEEETTEEEEEEEEEECCCGG----------GTTT
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCC--CcccCC--cccceeEEEEEECCEEEEEEEEeCCCchh----------hhHH
Confidence 457999999999999999999997654 233333 6666666666666654 55999999872 2233
Q ss_pred HHHHhhccCEEEEEEecCCCCCHhHH--HHHHHHHhhCCCCcEEEEecCCCcccC------------CcCcHHHHHHHHH
Q 007334 197 TANVLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHN------------GTGSLAGAAAESL 262 (607)
Q Consensus 197 ~~~~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~D~~~~------------~~~~~~~~~~~~~ 262 (607)
...++..+|++++|+|++++.+..+. .+...+....++.|+++|+||+|+... +..........+.
T Consensus 220 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 299 (332)
T 2wkq_A 220 RPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK 299 (332)
T ss_dssp GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHH
T ss_pred HHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHH
Confidence 44568899999999999987666553 244555555558999999999999753 2233344444555
Q ss_pred hcCCCCcEEeecCCCCChHHHHHHhccch
Q 007334 263 MLGFGDPIAISAETGLGMTELYEALRPSV 291 (607)
Q Consensus 263 ~~~~~~~i~iSA~~g~gi~eL~~~i~~~l 291 (607)
..+..+++++||++|.|++++++.|.+.+
T Consensus 300 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 328 (332)
T 2wkq_A 300 EIGAVKYLECSALTQRGLKTVFDEAIRAV 328 (332)
T ss_dssp HTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HcCCcEEEEecCCCCcCHHHHHHHHHHHH
Confidence 56655789999999999999999988755
No 257
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=99.77 E-value=1.4e-19 Score=181.09 Aligned_cols=148 Identities=20% Similarity=0.207 Sum_probs=104.9
Q ss_pred HHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEE
Q 007334 192 RTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIA 271 (607)
Q Consensus 192 ~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (607)
++++++...+..+|+|++|+|++++.+.....+. ++ ++|.++|+||+|+.+... .+.....+...|+ ++ .
T Consensus 10 ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll-----~k~~iivlNK~DL~~~~~--~~~~~~~~~~~g~-~v-~ 79 (262)
T 3cnl_A 10 KAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS-----RKETIILLNKVDIADEKT--TKKWVEFFKKQGK-RV-I 79 (262)
T ss_dssp CTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT-----TSEEEEEEECGGGSCHHH--HHHHHHHHHHTTC-CE-E
T ss_pred HHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc-----CCCcEEEEECccCCCHHH--HHHHHHHHHHcCC-eE-E
Confidence 3456778899999999999999998777653333 32 689999999999986321 1222333445566 56 9
Q ss_pred eecCCCCChHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhcCCcee
Q 007334 272 ISAETGLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVL 351 (607)
Q Consensus 272 iSA~~g~gi~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~~~~~~ 351 (607)
+||++|.|+++|++.+.+.+ ++++++|.||||||||+|+|++.....
T Consensus 80 iSa~~~~gi~~L~~~l~~~~---------------------------------~~v~~vG~~~vGKSslin~l~~~~~~~ 126 (262)
T 3cnl_A 80 TTHKGEPRKVLLKKLSFDRL---------------------------------ARVLIVGVPNTGKSTIINKLKGKRASS 126 (262)
T ss_dssp ECCTTSCHHHHHHHHCCCTT---------------------------------CEEEEEESTTSSHHHHHHHHHTTCC--
T ss_pred EECCCCcCHHHHHHHHHHhh---------------------------------hheEEeCCCCCCHHHHHHHHhcccccc
Confidence 99999999999988765321 489999999999999999999987778
Q ss_pred ecCCCCceeeeEEEEEEEcCeEEEEEecCCCccc
Q 007334 352 VGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQR 385 (607)
Q Consensus 352 ~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~ 385 (607)
+++.+|+|++.... .-+..+.||||||+...
T Consensus 127 ~~~~~g~T~~~~~~---~~~~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 127 VGAQPGITKGIQWF---SLENGVKILDTPGILYK 157 (262)
T ss_dssp --------CCSCEE---ECTTSCEEESSCEECCC
T ss_pred cCCCCCCccceEEE---EeCCCEEEEECCCcccC
Confidence 89999999876422 22457899999998765
No 258
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.77 E-value=4.3e-19 Score=168.02 Aligned_cols=160 Identities=18% Similarity=0.242 Sum_probs=100.0
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee-----CCeeEEEecCCCCccccCchhHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL-----GDLRFKVLDSAGLETEATSGSILDRTAG 195 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~-----~~~~~~liDTpG~~~~~~~~~~~~~~~~ 195 (607)
.+|+|+|.+|||||||+|+|++........... +++.+.....+.. ....+.+|||||++ ++..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~-t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~ 71 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSA-TVGIDVKDWPIQIRDKRKRDLVLNVWDFAGRE----------EFYS 71 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC------------CSEEEEEEEC---------CEEEEEEECSHH----------HHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCcce-eccEEeEEeeeccccCCCCceEEEEEecCCCH----------HHHH
Confidence 589999999999999999999853222222111 1334433333222 35689999999987 3444
Q ss_pred HHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHh---hCCCCcEEEEecCCCcccCCcCcH--HHH-HHHHHhcCCC--
Q 007334 196 MTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRK---HAPQIKPIVAMNKCESLHNGTGSL--AGA-AAESLMLGFG-- 267 (607)
Q Consensus 196 ~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~---~~~~~p~ilV~NK~D~~~~~~~~~--~~~-~~~~~~~~~~-- 267 (607)
....++..+|++++|+|++++....+ .+..|+.. ..++.|+++|+||+|+........ ... .......++.
T Consensus 72 ~~~~~~~~~~~~i~v~d~~~~~~s~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (184)
T 2zej_A 72 THPHFMTQRALYLAVYDLSKGQAEVD-AMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAI 150 (184)
T ss_dssp TSHHHHHHSEEEEEEEEGGGCHHHHH-THHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEE
T ss_pred hhHHHccCCcEEEEEEeCCcchhHHH-HHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcch
Confidence 44567888999999999988632121 23344433 345789999999999875322110 011 1111224552
Q ss_pred -CcEEeecCCCC-ChHHHHHHhccchH
Q 007334 268 -DPIAISAETGL-GMTELYEALRPSVE 292 (607)
Q Consensus 268 -~~i~iSA~~g~-gi~eL~~~i~~~l~ 292 (607)
+++++||++|. |+++|++.|.+.+.
T Consensus 151 ~~~~~~Sa~~~~~~~~~l~~~i~~~~~ 177 (184)
T 2zej_A 151 RDYHFVNATEESDALAKLRKTIINESL 177 (184)
T ss_dssp EEEEECCTTSCCHHHHHHHHHHHHHHH
T ss_pred hheEEEecccCchhHHHHHHHHHHHHh
Confidence 27899999996 99999999887664
No 259
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.77 E-value=7.1e-19 Score=194.69 Aligned_cols=189 Identities=19% Similarity=0.233 Sum_probs=122.8
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeec--------c------CCCCceeeeeEEEEeeeC-----CeeEEEecCCCC
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVY--------N------TPDDHVTRDIREGLAKLG-----DLRFKVLDSAGL 180 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~--------~------~~~~~~T~~~~~~~~~~~-----~~~~~liDTpG~ 180 (607)
+++|+|+|++|+|||||+++|+.....+.. + ..| .|.......+.+. +..+.||||||+
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerG--iTi~~~~~~~~~~~~~g~~~~l~liDTPGh 81 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERG--ITIKAQSVTLDYKASDGETYQLNFIDTPGH 81 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC----------------------------CEEEEEEECTTSCEEEEEEEECCCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhccc--ceeeeeEEEEEEecCCCCeEEEEEEECCCc
Confidence 568999999999999999999864321111 1 122 4444434444443 368999999999
Q ss_pred ccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHH
Q 007334 181 ETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAE 260 (607)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~ 260 (607)
. ++...+..++..+|++|+|+|++++...+.......+... ++|+|+|+||+|+...... ......
T Consensus 82 ~----------dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~--~ipiIvViNKiDl~~a~~~--~v~~ei 147 (599)
T 3cb4_D 82 V----------DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEM--DLEVVPVLNKIDLPAADPE--RVAEEI 147 (599)
T ss_dssp G----------GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHT--TCEEEEEEECTTSTTCCHH--HHHHHH
T ss_pred h----------HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC--CCCEEEeeeccCcccccHH--HHHHHH
Confidence 8 4555667788999999999999999988876654444444 7899999999999864321 111222
Q ss_pred HHhcCC--CCcEEeecCCCCChHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEc---CCCC
Q 007334 261 SLMLGF--GDPIAISAETGLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVG---RPNV 335 (607)
Q Consensus 261 ~~~~~~--~~~i~iSA~~g~gi~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG---~~nv 335 (607)
...+++ .+++++||++|.|+++|++.|.+.++... .....+++..+.. .+++
T Consensus 148 ~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~-----------------------~~~~~p~~alI~d~~~d~~~ 204 (599)
T 3cb4_D 148 EDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPPPE-----------------------GDPEGPLQALIIDSWFDNYL 204 (599)
T ss_dssp HHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCCCC-----------------------CCTTSCCEEEEEEEEEETTT
T ss_pred HHHhCCCcceEEEeecccCCCchhHHHHHhhcCCCcc-----------------------ccccCCceeeeeeccccccc
Confidence 233444 35899999999999999999987765310 0012244444433 3889
Q ss_pred chhHHHHHhhcC
Q 007334 336 GKSTLLNALLQE 347 (607)
Q Consensus 336 GKSslin~l~~~ 347 (607)
|+.++++-+.|.
T Consensus 205 G~v~~~rV~sG~ 216 (599)
T 3cb4_D 205 GVVSLIRIKNGT 216 (599)
T ss_dssp EEEEEEEEEESC
T ss_pred cEEEEEEEEeCE
Confidence 998888776654
No 260
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.77 E-value=1.4e-18 Score=178.45 Aligned_cols=157 Identities=18% Similarity=0.234 Sum_probs=110.3
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEE-cCeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEY-QGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
.+||+++|.+|||||||+|+|++.....+++.+++|++.....+.+ ++..+.||||||+.+.. +.+.......+
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~~~~ 77 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFM-----ENYFTKQKDHI 77 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHH-----HHHHTTTHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHh-----hhhhhhHHHHH
Confidence 4799999999999999999999876566778899999988887776 56789999999975431 11111234467
Q ss_pred HhhccEEEEEeccchhh----------HH------hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCC-
Q 007334 403 LMRAHVVALVLDAEEVR----------AV------EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVT- 465 (607)
Q Consensus 403 i~~ad~~llViD~~~~~----------~~------~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 465 (607)
++++|++|+|+|+++.. .. ..++|+++|+||+|+.+........+.. ..+..+......
T Consensus 78 ~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~----~~~~~~~~~~~g~ 153 (307)
T 3r7w_A 78 FQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIM----MKNLSETSSEFGF 153 (307)
T ss_dssp HTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHH----HHHHHHHHHTTTC
T ss_pred hccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHH----HHHHHHHHHHcCC
Confidence 78999999999998750 01 1389999999999998632221111111 111111111111
Q ss_pred -CCCEEEcccCCCCCHHHHHHHHHHH
Q 007334 466 -GIPVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 466 -~~~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
.++++++||++ .|+.++|..+.+.
T Consensus 154 ~~~~~~~tSa~~-~~i~e~~~~iv~~ 178 (307)
T 3r7w_A 154 PNLIGFPTSIWD-ESLYKAWSQIVCS 178 (307)
T ss_dssp CSCEEEECCTTS-SHHHHHHHHHHHT
T ss_pred CCeEEEEeeecC-ChHHHHHHHHHHH
Confidence 37999999999 8899998887763
No 261
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.77 E-value=1.3e-18 Score=164.64 Aligned_cols=150 Identities=19% Similarity=0.241 Sum_probs=95.8
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecC-CCCceeeeEEEEEEE-----cCeEEEEEecCCCcccccccCcchhHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGP-EAGLTRDSVRVHFEY-----QGRTVYLVDTAGWLQREKEKGPASLSVMQ 398 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~-~~gtT~~~~~~~~~~-----~~~~~~liDTpG~~~~~~~~~~~~~~~~~ 398 (607)
+||+++|++|||||||+|+|++........ .++++.+.....+.+ ....+.+|||||+.+... .
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------~ 72 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYS----------T 72 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHT----------T
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHH----------h
Confidence 689999999999999999999853233332 333345544433332 355788999999644321 1
Q ss_pred HHHHHhhccEEEEEeccchhh------------H--HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCC
Q 007334 399 SRKNLMRAHVVALVLDAEEVR------------A--VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQV 464 (607)
Q Consensus 399 ~~~~i~~ad~~llViD~~~~~------------~--~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (607)
...+++.+|++++|+|.+++. . ...+.|+++|+||+|+.+..... ....+..+.++..
T Consensus 73 ~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~--------~~~~~~~~~~~~~ 144 (184)
T 2zej_A 73 HPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRK--------ACMSKITKELLNK 144 (184)
T ss_dssp SHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHH--------HHHHHHHHHTTTC
T ss_pred hHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhH--------HHHHHHHHHHHHh
Confidence 124567899999999998741 0 11378999999999997542110 0112233344444
Q ss_pred CCCC----EEEcccCCCC-CHHHHHHHHHHHHH
Q 007334 465 TGIP----VVFTSALEGR-GRIAVMHQVIDTYQ 492 (607)
Q Consensus 465 ~~~~----~v~iSA~~g~-gv~~l~~~i~~~~~ 492 (607)
.+++ ++++||++|. |++++++.|.+.+.
T Consensus 145 ~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~ 177 (184)
T 2zej_A 145 RGFPAIRDYHFVNATEESDALAKLRKTIINESL 177 (184)
T ss_dssp TTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHH
T ss_pred cCCcchhheEEEecccCchhHHHHHHHHHHHHh
Confidence 4566 9999999997 99999998877654
No 262
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.77 E-value=1.2e-20 Score=180.93 Aligned_cols=146 Identities=22% Similarity=0.227 Sum_probs=98.2
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++.. ......++++.+.....+.+++ ..+.||||||..+..... .
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~----------~ 100 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDT-YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT----------S 100 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCC-CCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCS----------C
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCC-CCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHH----------H
Confidence 45899999999999999999999753 4444456677777777777877 468899999976542111 1
Q ss_pred HHHhhccEEEEEeccchhh----------HH----hcCCcEEEEEeCccCCCCcCch-HHHHHHHHhcHHHHHhhCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEVR----------AV----EEGRGLVVIVNKMDLLSGRQNS-ALYKRVKEAVPQEIQTVIPQVT 465 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~----------~~----~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 465 (607)
.+++.+|++|+|+|+++.. .. ..++|+++|+||+|+.+..... +... .+. ...
T Consensus 101 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~--------~~~----~~~ 168 (199)
T 3l0i_B 101 SYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAK--------EFA----DSL 168 (199)
T ss_dssp C--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-C--------HHH----HTT
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHH--------HHH----HHc
Confidence 3567899999999998751 11 1378999999999997543211 0001 111 123
Q ss_pred CCCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 466 GIPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 466 ~~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+++++++||++|.|++++|+.|.+.+
T Consensus 169 ~~~~~~vSA~~g~gv~~l~~~l~~~l 194 (199)
T 3l0i_B 169 GIPFLETSAKNATNVEQSFMTMAAEI 194 (199)
T ss_dssp TCCBCCCCC---HHHHHHHHHHTTTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999887644
No 263
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.77 E-value=5.5e-19 Score=180.50 Aligned_cols=171 Identities=18% Similarity=0.210 Sum_probs=110.7
Q ss_pred cCCCEEEEecCCCCchhHHHHHhhcccee-----eeccCCC--------------------Cceeeee------------
Q 007334 118 NLLPTVMIIGRPNVGKSALFNRLIRRREA-----LVYNTPD--------------------DHVTRDI------------ 160 (607)
Q Consensus 118 ~~~~~V~ivG~~nvGKSSL~n~L~~~~~~-----~v~~~~~--------------------~~~T~~~------------ 160 (607)
...++|+|+|.+|||||||+|+|++..+. .+...|+ .++|++.
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 34689999999999999999999998753 2232332 0022220
Q ss_pred ------------EEEEeeeCCeeEEEecCCCCccccC---chhHHHHHHHHHHHHhhccCEEE-EEEecCCCCCHhHH-H
Q 007334 161 ------------REGLAKLGDLRFKVLDSAGLETEAT---SGSILDRTAGMTANVLAKTQFAI-FMIDVRSGLHPLDL-E 223 (607)
Q Consensus 161 ------------~~~~~~~~~~~~~liDTpG~~~~~~---~~~~~~~~~~~~~~~~~~ad~vl-~VvD~s~~~~~~~~-~ 223 (607)
........+..+.||||||+..... .......+...+..++..++.++ +|+|++++.+..+. .
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 0000011246899999999974321 12232345667778888888666 79999987766653 3
Q ss_pred HHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhc--CCCCcEEeecCCCCChHHHHHHhccc
Q 007334 224 VGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLML--GFGDPIAISAETGLGMTELYEALRPS 290 (607)
Q Consensus 224 ~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~--~~~~~i~iSA~~g~gi~eL~~~i~~~ 290 (607)
+.+++... +.|+++|+||+|+.................+ ++.+++++||++|.|++++++.|.+.
T Consensus 184 ~~~~~~~~--~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 184 IAKEVDPQ--GQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp HHHHHCTT--CSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred HHHHhCCC--CCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 55555443 7899999999999865432221111101111 22357899999999999999998763
No 264
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.76 E-value=1.1e-18 Score=174.83 Aligned_cols=167 Identities=17% Similarity=0.144 Sum_probs=112.4
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCC-ceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhH---HHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAG-LTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLS---VMQ 398 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~g-tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~---~~~ 398 (607)
..++|+|+|++|||||||+|+|++...+..+..++ +|++.....+.+++..+.||||||+.+.... .+.+. ...
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~--~~~~~~~i~~~ 98 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDH--CEALYKEVQRC 98 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCC--CHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCC--HHHHHHHHHHH
Confidence 45899999999999999999999887666666665 8899888888999999999999998765321 11111 223
Q ss_pred HHHHHhhccEEEEEeccchh--------hHH-hc-----CCcEEEEEe-CccCCCCcCchHHHHHHH-HhcHHHHHhhCC
Q 007334 399 SRKNLMRAHVVALVLDAEEV--------RAV-EE-----GRGLVVIVN-KMDLLSGRQNSALYKRVK-EAVPQEIQTVIP 462 (607)
Q Consensus 399 ~~~~i~~ad~~llViD~~~~--------~~~-~~-----~~p~ivv~N-K~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~~ 462 (607)
+..+++.+|++|+|+|++.. ..+ .. ..|.++|+| |+|+... .......... +.+ ..+...+.
T Consensus 99 ~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~-~~~~~~~~ 176 (260)
T 2xtp_A 99 YLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKAL-SKLVAACG 176 (260)
T ss_dssp HHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHH-HHHHHHTT
T ss_pred HHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCc-cHHHHHHhcchHHH-HHHHHHhC
Confidence 34467889999999999752 111 11 568888887 9999743 2111110000 001 11112222
Q ss_pred CCC--CCCEEEcccCCCCCHHHHHHHHHHHHHHH
Q 007334 463 QVT--GIPVVFTSALEGRGRIAVMHQVIDTYQKW 494 (607)
Q Consensus 463 ~~~--~~~~v~iSA~~g~gv~~l~~~i~~~~~~~ 494 (607)
... ..+ +++||++|.|++++|+.|.+.+...
T Consensus 177 ~~~~~~~~-~~~SA~~~~gv~~l~~~i~~~~~~~ 209 (260)
T 2xtp_A 177 GRICAFNN-RAEGSNQDDQVKELMDCIEDLLMEK 209 (260)
T ss_dssp TCEEECCT-TCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CeEEEecC-cccccccHHHHHHHHHHHHHHHHhC
Confidence 111 112 7899999999999999998877653
No 265
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.76 E-value=2.1e-18 Score=187.46 Aligned_cols=158 Identities=20% Similarity=0.204 Sum_probs=115.8
Q ss_pred CEEEEecCCCCchhHHHHHhhccce------eeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRRE------ALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTA 194 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~------~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~ 194 (607)
++|+++|++|+|||||+|+|++... ......++ +|.+..+..+.+++..+.+|||||+. ++.
T Consensus 20 ~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~G--iTi~~~~~~~~~~~~~i~iiDtPGh~----------~~~ 87 (482)
T 1wb1_A 20 INLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRG--ITIDIGFSAFKLENYRITLVDAPGHA----------DLI 87 (482)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC----------------------CCCEEEETTEEEEECCCSSHH----------HHH
T ss_pred CEEEEECCCCChHHHHHHHHHCCCcccccccccccccCc--cEEecceEEEEECCEEEEEEECCChH----------HHH
Confidence 6899999999999999999998761 11233444 78887777777888999999999987 566
Q ss_pred HHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcC--cHHHHHHHHHhc-CC--CCc
Q 007334 195 GMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTG--SLAGAAAESLML-GF--GDP 269 (607)
Q Consensus 195 ~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~--~~~~~~~~~~~~-~~--~~~ 269 (607)
..+...+..+|++|+|+|++++...+..+.+.+++.. +.|.|+|+||+|+...... ...+....+... ++ .++
T Consensus 88 ~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~--~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~i 165 (482)
T 1wb1_A 88 RAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHF--NIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSI 165 (482)
T ss_dssp HHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHT--TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCE
T ss_pred HHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHc--CCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceE
Confidence 7778889999999999999999888887777777766 7899999999999853110 011112222233 22 378
Q ss_pred EEeecCCCCChHHHHHHhccchH
Q 007334 270 IAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 270 i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
+++||++|.|+++|++.|.+.++
T Consensus 166 i~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 166 IPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHhhc
Confidence 99999999999999999988765
No 266
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.76 E-value=1.2e-18 Score=180.62 Aligned_cols=151 Identities=21% Similarity=0.271 Sum_probs=111.4
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC-eEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG-RTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~-~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
.+|+++|.||||||||+|+|++.. ..+.+++++|.++....+.+++ ..+.||||||+.+..... ..+ ....++++
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~-~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~--~~l-~~~fl~~i 234 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAK-PKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQG--VGL-GHQFLRHI 234 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEEC-CEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCT--TTT-HHHHHHHH
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCC-CccccCCccccCceEEEEEeCCCceEEEecCCCCccccccc--chh-HHHHHHHH
Confidence 479999999999999999999774 4568899999998888888876 899999999976531111 111 13345677
Q ss_pred hhccEEEEEeccch---h-----------hHH-----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCC
Q 007334 404 MRAHVVALVLDAEE---V-----------RAV-----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQV 464 (607)
Q Consensus 404 ~~ad~~llViD~~~---~-----------~~~-----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (607)
..+|++|+|+|+++ . ... ...+|+++|+||+|+.... +..+ ++.+.+..
T Consensus 235 ~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~---e~~~--------~l~~~l~~- 302 (342)
T 1lnz_A 235 ERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA---ENLE--------AFKEKLTD- 302 (342)
T ss_dssp HHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH---HHHH--------HHHHHCCS-
T ss_pred HhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH---HHHH--------HHHHHhhc-
Confidence 88999999999975 2 111 1378999999999997541 1111 22223321
Q ss_pred CCCCEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 465 TGIPVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 465 ~~~~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
..+++++||+++.|++++++.|.+.+.
T Consensus 303 -~~~v~~iSA~tg~gi~eL~~~l~~~l~ 329 (342)
T 1lnz_A 303 -DYPVFPISAVTREGLRELLFEVANQLE 329 (342)
T ss_dssp -CCCBCCCSSCCSSTTHHHHHHHHHHHT
T ss_pred -CCCEEEEECCCCcCHHHHHHHHHHHHh
Confidence 268999999999999999998887653
No 267
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.76 E-value=3.4e-18 Score=169.01 Aligned_cols=166 Identities=14% Similarity=0.199 Sum_probs=100.7
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCC--CceeeeEEEEEEEcCeEEEEEecCCCcccccccC--cchhHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEA--GLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKG--PASLSVMQ 398 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~--gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~--~~~~~~~~ 398 (607)
..++|+++|++|||||||+|+|+|... .....+ ++|.++....+.+++..+.||||||+.+...... .+.+ ...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~-~~~ 105 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKV-FHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEI-IRC 105 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCC-SCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHH-HHH
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCc-CccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHH-HHH
Confidence 458999999999999999999998764 444444 7889988888999999999999999876521110 1111 112
Q ss_pred HHHHHhhccEEEEEeccchh---------hH-----HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCC
Q 007334 399 SRKNLMRAHVVALVLDAEEV---------RA-----VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQV 464 (607)
Q Consensus 399 ~~~~i~~ad~~llViD~~~~---------~~-----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (607)
...+.+.+|++|+|+|++.. .. ....+|+++|+||+|+.......+......+.+. ++.+.+
T Consensus 106 ~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~-~l~~~~--- 181 (239)
T 3lxx_A 106 ILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQ-DLMDIF--- 181 (239)
T ss_dssp HHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHH-HHHHHH---
T ss_pred HHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHH-HHHHHc---
Confidence 22344567999999998653 11 1235699999999999865433222211111111 111111
Q ss_pred CCCCEEEcccCCC-----CCHHHHHHHHHHHHHHHh
Q 007334 465 TGIPVVFTSALEG-----RGRIAVMHQVIDTYQKWC 495 (607)
Q Consensus 465 ~~~~~v~iSA~~g-----~gv~~l~~~i~~~~~~~~ 495 (607)
+..++++++..+ .|+.+|++.+.+.+.+..
T Consensus 182 -~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~~ 216 (239)
T 3lxx_A 182 -GDRYCALNNKATGAEQEAQRAQLLGLIQRVVRENK 216 (239)
T ss_dssp -SSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred -CCEEEEEECCCCccccHHHHHHHHHHHHHHHHHcC
Confidence 345777766643 688999988888776543
No 268
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.76 E-value=1.3e-18 Score=164.46 Aligned_cols=154 Identities=14% Similarity=0.154 Sum_probs=98.3
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++... ...+..+..+.....+.+++ ..+.||||||..+.... ..
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------~~ 73 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCF--PENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNV----------RP 73 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTT----------GG
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhh----------HH
Confidence 358999999999999999999997642 22333333333344455554 46789999997544211 12
Q ss_pred HHHhhccEEEEEeccchh----h----------HHhcCCcEEEEEeCccCCCCcCchHHHHHHH----HhcHHHHHhhCC
Q 007334 401 KNLMRAHVVALVLDAEEV----R----------AVEEGRGLVVIVNKMDLLSGRQNSALYKRVK----EAVPQEIQTVIP 462 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~----~----------~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~~~ 462 (607)
.++..+|++|+|+|+++. . ....+.|+++|+||+|+.+... ....+. +.+..+..+.++
T Consensus 74 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~---~~~~~~~~~~~~v~~~~~~~~~ 150 (184)
T 1m7b_A 74 LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVS---TLVELSNHRQTPVSYDQGANMA 150 (184)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHH---HHHHHHTTTCCCCCHHHHHHHH
T ss_pred hhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchh---hHhhhhhcccCCCCHHHHHHHH
Confidence 356789999999999865 0 0114789999999999975311 000000 001111111111
Q ss_pred C-CCCCCEEEcccC-CCCCHHHHHHHHHHHH
Q 007334 463 Q-VTGIPVVFTSAL-EGRGRIAVMHQVIDTY 491 (607)
Q Consensus 463 ~-~~~~~~v~iSA~-~g~gv~~l~~~i~~~~ 491 (607)
. ....+++++||+ +|.|++++|+.+.+.+
T Consensus 151 ~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 151 KQIGAATYIECSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp HHHTCSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred HHcCCcEEEEeeecCCCcCHHHHHHHHHHHH
Confidence 1 113689999999 6899999999988754
No 269
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.62 E-value=5.1e-20 Score=177.27 Aligned_cols=156 Identities=18% Similarity=0.198 Sum_probs=103.8
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+++|++.. ....+.+++.+.....+.+++. .+.||||||+.+.. ....
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----------~~~~ 96 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNA--FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYD----------RLRP 96 (204)
Confidence 45899999999999999999999653 2344555666655555555554 45599999965432 1223
Q ss_pred HHHhhccEEEEEeccchhh-----------H---HhcCCcEEEEEeCccCCCCcCchHHHHHH-HHhcHHHHHhhCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEVR-----------A---VEEGRGLVVIVNKMDLLSGRQNSALYKRV-KEAVPQEIQTVIPQVT 465 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~-----------~---~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 465 (607)
.+++.+|++++|+|+++.. . ...++|+++|+||+|+.+.....+..... .+.+..+....++...
T Consensus 97 ~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 176 (204)
T 3th5_A 97 LSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI 176 (204)
Confidence 4667899999999998750 0 11278999999999997643211111110 0112222222333334
Q ss_pred CC-CEEEcccCCCCCHHHHHHHHHHH
Q 007334 466 GI-PVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 466 ~~-~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
+. +++++||++|.|++++|+.+.+.
T Consensus 177 ~~~~~~~vSA~~g~gi~~l~~~l~~~ 202 (204)
T 3th5_A 177 GAVKYLECSALTQRGLKTVFDEAIRA 202 (204)
Confidence 54 89999999999999999988764
No 270
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.75 E-value=7.5e-18 Score=159.46 Aligned_cols=156 Identities=19% Similarity=0.237 Sum_probs=101.2
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccc--cCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKE--KGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~--~~~~~~~~~~~~~~ 402 (607)
++|+++|.+|||||||+|+|++.. +.++..+|+|.+.....+ . .+.+|||||+...... .+.+.+... ...+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~t~~~~~~~~--~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~-~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKK-VRRGKRPGVTRKIIEIEW--K--NHKIIDMPGFGFMMGLPKEVQERIKDE-IVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCC-CSSSSSTTCTTSCEEEEE--T--TEEEEECCCBSCCTTSCHHHHHHHHHH-HHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcC-CccCCCCCccceeEEEec--C--CEEEEECCCccccccCCHHHHHHHHHH-HHHH
Confidence 589999999999999999999764 667778888887654433 3 7889999996543210 001222111 1122
Q ss_pred ----HhhccEEEEEeccchhh---------------------HHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHH
Q 007334 403 ----LMRAHVVALVLDAEEVR---------------------AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEI 457 (607)
Q Consensus 403 ----i~~ad~~llViD~~~~~---------------------~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 457 (607)
...+++++.|+|+.... ....++|+++|+||+|+.... .+..+.+ ...+
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~----~~~~ 149 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV--QEVINFL----AEKF 149 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH--HHHHHHH----HHHH
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH--HHHHHHH----HHHh
Confidence 44567888888876530 112479999999999998653 1112222 1111
Q ss_pred HhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 458 QTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 458 ~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
...+. ....+++++||++|.|++++|+.+.+.+.+
T Consensus 150 ~~~~~-~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 184 (190)
T 2cxx_A 150 EVPLS-EIDKVFIPISAKFGDNIERLKNRIFEVIRE 184 (190)
T ss_dssp TCCGG-GHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hhhhh-ccCCcEEEEecCCCCCHHHHHHHHHHhcch
Confidence 10000 001358999999999999999999887654
No 271
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.75 E-value=2.2e-18 Score=188.97 Aligned_cols=152 Identities=16% Similarity=0.156 Sum_probs=111.7
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANV 200 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 200 (607)
.+|+|+|.+|||||||+|+|++.+. +.. . .|.+..+..+.+.+..+.+|||||+.. +...+..+
T Consensus 323 ~ki~lvG~~nvGKSsLl~~l~~~~~--~~~--~--~T~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~~~ 386 (497)
T 3lvq_E 323 MRILMLGLDAAGKTTILYKLKLGQS--VTT--I--PTVGFNVETVTYKNVKFNVWDVGGQDK----------IRPLWRHY 386 (497)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSC--CCC--C--CCSSEEEEEEESSSCEEEEEEECCCGG----------GSGGGGGG
T ss_pred eeEEEEcCCCCCHHHHHHHHhcCCC--CCc--C--CccceeEEEEEeCCEEEEEEECCCcHH----------HHHHHHHH
Confidence 6899999999999999999998773 222 2 466777777888899999999999872 33345667
Q ss_pred hhccCEEEEEEecCCCCCHhHHH--HHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCC-------CcE
Q 007334 201 LAKTQFAIFMIDVRSGLHPLDLE--VGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFG-------DPI 270 (607)
Q Consensus 201 ~~~ad~vl~VvD~s~~~~~~~~~--~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~-------~~i 270 (607)
+..+|++|+|+|++++.+..+.. +...++.. ..++|+|+|+||+|+..... ..... ..++.. +++
T Consensus 387 ~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~--~~~~~---~~~~~~~~~~~~~~~~ 461 (497)
T 3lvq_E 387 YTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK--PHEIQ---EKLGLTRIRDRNWYVQ 461 (497)
T ss_dssp GTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCC--HHHHH---HHTTCTTCCSSCEEEE
T ss_pred hccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCC--HHHHH---HHhchhhhhcCCeEEE
Confidence 89999999999999876655422 22333221 24789999999999976422 12111 122221 479
Q ss_pred EeecCCCCChHHHHHHhccchHH
Q 007334 271 AISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 271 ~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
++||++|+|+++++++|.+.+..
T Consensus 462 ~~SA~~g~gi~~l~~~l~~~~~~ 484 (497)
T 3lvq_E 462 PSCATSGDGLYEGLTWLTSNYKS 484 (497)
T ss_dssp ECBTTTTBTHHHHHHHHHHHCC-
T ss_pred EEECCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999887754
No 272
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.75 E-value=5.5e-18 Score=167.51 Aligned_cols=172 Identities=11% Similarity=0.116 Sum_probs=110.3
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCch-hHHHHHHHHH
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSG-SILDRTAGMT 197 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~-~~~~~~~~~~ 197 (607)
..++|+|+|.+|||||||+|+|++.... ....+..++|.+.......+.+..+.||||||+....... .....+....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~-~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~ 106 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVF-HSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCI 106 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCS-CC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcC-ccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999999998763 3334433488888888888899999999999998443221 2223344444
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhC---CCCcEEEEecCCCcccCCcCc------HHHHHHHHHhcCCCC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHA---PQIKPIVAMNKCESLHNGTGS------LAGAAAESLMLGFGD 268 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~---~~~p~ilV~NK~D~~~~~~~~------~~~~~~~~~~~~~~~ 268 (607)
..++..+|++|+|+|++. .+..+..+..++.+.. ...|+++|+||+|+....... ...........+. .
T Consensus 107 ~~~~~~~~~~l~v~d~~~-~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~-~ 184 (239)
T 3lxx_A 107 LLTSPGPHALLLVVPLGR-YTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGD-R 184 (239)
T ss_dssp HHTTTCCSEEEEEEETTC-CSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHSS-S
T ss_pred HhcCCCCcEEEEEeeCCC-CCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCC-E
Confidence 555678899999999985 4445555555554321 146999999999998654321 1122333344554 5
Q ss_pred cEEeecCCC-----CChHHHHHHhccchHH
Q 007334 269 PIAISAETG-----LGMTELYEALRPSVED 293 (607)
Q Consensus 269 ~i~iSA~~g-----~gi~eL~~~i~~~l~~ 293 (607)
++.+++..+ .|+.+|++.|...+.+
T Consensus 185 ~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 185 YCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 666766543 6889999988776643
No 273
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.75 E-value=6.4e-18 Score=167.94 Aligned_cols=174 Identities=19% Similarity=0.133 Sum_probs=108.6
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCC-CceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchh--HHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEA-GLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASL--SVMQS 399 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~-gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~--~~~~~ 399 (607)
..++|+++|.+|||||||+|+|++.........+ ++|+++....+.+++..+.||||||+.+.....+.+.. .....
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~ 99 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCY 99 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHHH
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHHH
Confidence 4589999999999999999999998766554433 68999988888999999999999998654221101111 11111
Q ss_pred HHHHhhccEEEEEeccchh--------hHH-h------cCCcEEEEEeCccCCCCcCchHHHHHHH-HhcHHHHHhhCCC
Q 007334 400 RKNLMRAHVVALVLDAEEV--------RAV-E------EGRGLVVIVNKMDLLSGRQNSALYKRVK-EAVPQEIQTVIPQ 463 (607)
Q Consensus 400 ~~~i~~ad~~llViD~~~~--------~~~-~------~~~p~ivv~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 463 (607)
..+...+|++|+|+|++.. ... . .+.|+|+++||+|+.+.. ..+.+.... +.+ +.+.+.+
T Consensus 100 ~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~-~~~~l~~~~~~~l-~~l~~~~-- 175 (247)
T 3lxw_A 100 LLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGS-LHDYVSNTENRAL-RELVAEC-- 175 (247)
T ss_dssp HHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHH-HHHHHHT--
T ss_pred HhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCC-HHHHHhhcccHHH-HHHHHHc--
Confidence 2334889999999998753 111 1 168999999999997542 211111000 011 1112221
Q ss_pred CCCCCEEEcccCC-----CCCHHHHHHHHHHHHHHHhcCCChHH
Q 007334 464 VTGIPVVFTSALE-----GRGRIAVMHQVIDTYQKWCLRLPTSR 502 (607)
Q Consensus 464 ~~~~~~v~iSA~~-----g~gv~~l~~~i~~~~~~~~~~~~~~~ 502 (607)
+..++.+++.. +.|+.+|++.|.+.+.+.....-+..
T Consensus 176 --g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~~~~~y~~~ 217 (247)
T 3lxw_A 176 --GGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEHKGAHYSNE 217 (247)
T ss_dssp --TTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCH
T ss_pred --CCeEEEEeCCCCccccHHHHHHHHHHHHHHHHHcCCCCCCHH
Confidence 33565565443 68999999999888876544433333
No 274
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.74 E-value=6.8e-18 Score=170.49 Aligned_cols=168 Identities=20% Similarity=0.265 Sum_probs=96.3
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccC-----CCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCch----h
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNT-----PDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSG----S 188 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~-----~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~----~ 188 (607)
.++|+++|.+|||||||+|+|++.+....... ...+++.+.....+..++ ..+.+|||||+....... .
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~ 87 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP 87 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHH
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHH
Confidence 46899999999999999999998765433210 122244455444444455 389999999996432211 1
Q ss_pred HHHHHHHHHHHHhhc-------------cCEEEEEEecCC-CCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcH
Q 007334 189 ILDRTAGMTANVLAK-------------TQFAIFMIDVRS-GLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSL 254 (607)
Q Consensus 189 ~~~~~~~~~~~~~~~-------------ad~vl~VvD~s~-~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~ 254 (607)
+......+...++.. +|++++++|.+. +....+.++.+++.. ++|+|+|+||+|+........
T Consensus 88 i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~---~~pvi~V~nK~D~~~~~e~~~ 164 (274)
T 3t5d_A 88 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE---KVNIIPLIAKADTLTPEECQQ 164 (274)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT---TSCEEEEESSGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc---cCCEEEEEeccCCCCHHHHHH
Confidence 111111222334443 778888886654 788888777777765 689999999999975422111
Q ss_pred --HHHHHHHHhcCCCCcEEeecCCCCChHHHHHHhccch
Q 007334 255 --AGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSV 291 (607)
Q Consensus 255 --~~~~~~~~~~~~~~~i~iSA~~g~gi~eL~~~i~~~l 291 (607)
......+...+. +++++||.+|+|++++++.|.+.+
T Consensus 165 ~~~~i~~~l~~~~i-~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 165 FKKQIMKEIQEHKI-KIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHHHHHHHHHTTC-CCCCC-----------CHHHHHTC
T ss_pred HHHHHHHHHHHcCC-eEEcCCCCCChhHHHHHHHHhcCC
Confidence 122233445566 688999999999999998887654
No 275
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.74 E-value=1.6e-18 Score=189.81 Aligned_cols=117 Identities=20% Similarity=0.257 Sum_probs=92.5
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceee---------------ecc------CCCCceeeeeEEEEeeeCCeeEEEecC
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREAL---------------VYN------TPDDHVTRDIREGLAKLGDLRFKVLDS 177 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~---------------v~~------~~~~~~T~~~~~~~~~~~~~~~~liDT 177 (607)
..++|+|+|++|||||||+|+|+....++ +.+ ..+ +|.+.....+.+.+..+.||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~G--iTi~~~~~~~~~~~~~i~liDT 89 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRG--ISVTTSVMQFPYKDYLINLLDT 89 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHC--CSSSSSEEEEEETTEEEEEECC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCC--eeEEEeEEEEEeCCEEEEEEEC
Confidence 35789999999999999999997321111 111 133 5666666777788999999999
Q ss_pred CCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccC
Q 007334 178 AGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHN 249 (607)
Q Consensus 178 pG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~ 249 (607)
||+. ++...+..++..+|++|+|+|++++....+..+...+... ++|+++|+||+|+...
T Consensus 90 PG~~----------df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~--~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 90 PGHA----------DFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLR--HTPIMTFINKMDRDTR 149 (528)
T ss_dssp CCST----------TCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTT--TCCEEEEEECTTSCCS
T ss_pred CCch----------hHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc--CCCEEEEEeCCCCccc
Confidence 9998 3445577889999999999999999999888777777765 7899999999999754
No 276
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.74 E-value=1.1e-17 Score=161.41 Aligned_cols=154 Identities=14% Similarity=0.154 Sum_probs=98.2
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++... . ..+..|+.+.....+.+++ ..+.||||||..+.... ..
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~-~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~----------~~ 94 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCF-P-ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNV----------RP 94 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-C-SSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTT----------GG
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCC-C-CCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHH----------HH
Confidence 458999999999999999999998643 2 2333333333334455554 46789999997544210 12
Q ss_pred HHHhhccEEEEEeccchhh--------------HHhcCCcEEEEEeCccCCCCcCchHHHHHHH----HhcHHHHHhhCC
Q 007334 401 KNLMRAHVVALVLDAEEVR--------------AVEEGRGLVVIVNKMDLLSGRQNSALYKRVK----EAVPQEIQTVIP 462 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~--------------~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~~~ 462 (607)
.+++.+|++|+|+|+++.. ....+.|+++|+||+|+.+... ....+. +.+..+..+.++
T Consensus 95 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~---~~~~~~~~~~~~v~~~~~~~~~ 171 (205)
T 1gwn_A 95 LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVS---TLVELSNHRQTPVSYDQGANMA 171 (205)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHH---HHHHHHTTTCCCCCHHHHHHHH
T ss_pred hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchh---hhhhhcccccCCCCHHHHHHHH
Confidence 3567899999999998650 0113789999999999974311 000000 001111111111
Q ss_pred C-CCCCCEEEcccC-CCCCHHHHHHHHHHHH
Q 007334 463 Q-VTGIPVVFTSAL-EGRGRIAVMHQVIDTY 491 (607)
Q Consensus 463 ~-~~~~~~v~iSA~-~g~gv~~l~~~i~~~~ 491 (607)
. ....+++++||+ +|.|++++|+.+.+.+
T Consensus 172 ~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 172 KQIGAATYIECSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp HHHTCSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCCEEEEeeeccCCcCHHHHHHHHHHHH
Confidence 1 113589999999 6899999999988754
No 277
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.74 E-value=5.2e-18 Score=187.35 Aligned_cols=158 Identities=20% Similarity=0.257 Sum_probs=108.7
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeee--------cc------CCCCceeeeeEEEEeeeC-----CeeEEEecCCC
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALV--------YN------TPDDHVTRDIREGLAKLG-----DLRFKVLDSAG 179 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v--------~~------~~~~~~T~~~~~~~~~~~-----~~~~~liDTpG 179 (607)
..++|+|+|++|+|||||+++|+.....+. .+ ..| .|.......+.+. ...++||||||
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerG--ITI~~~~~~~~~~~~dg~~~~inliDTPG 82 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERG--ITVKMQAVRMFYKAKDGNTYKLHLIDTPG 82 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-------------------------CCCCSEEEEEECTTSCEEEEEEECCCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhccc--ceeeeeEEEEEEEcCCCCeEEEEEEECCC
Confidence 357899999999999999999986422111 01 112 3333322333332 26899999999
Q ss_pred CccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHH
Q 007334 180 LETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAA 259 (607)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~ 259 (607)
+. ++...+..++..+|++|+|+|++++.+.+.......+... +.|+|+|+||+|+..... .....
T Consensus 83 h~----------dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~--~ipiIvviNKiDl~~a~~---~~v~~ 147 (600)
T 2ywe_A 83 HV----------DFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQ--DLVIIPVINKIDLPSADV---DRVKK 147 (600)
T ss_dssp SG----------GGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHT--TCEEEEEEECTTSTTCCH---HHHHH
T ss_pred cH----------hHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHC--CCCEEEEEeccCccccCH---HHHHH
Confidence 98 4445566778999999999999999988876655544444 789999999999976432 22222
Q ss_pred -HHHhcCCC--CcEEeecCCCCChHHHHHHhccchHH
Q 007334 260 -ESLMLGFG--DPIAISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 260 -~~~~~~~~--~~i~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
....+++. +++++||++|.|+++|++.|.+.++.
T Consensus 148 el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 148 QIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp HHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhccc
Confidence 22334553 48999999999999999999877653
No 278
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.73 E-value=1.5e-17 Score=159.33 Aligned_cols=161 Identities=21% Similarity=0.207 Sum_probs=114.0
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCe--eEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDL--RFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+|+|.+|||||||+|+|++....... .+. ++.+...+.+.+++. .+.+|||||+... ....
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~-~~t--~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~----------~~~~ 71 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLES-KST--IGVEFATRSIQVDGKTIKAQIWDTAGQERY----------RRIT 71 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC----CC--CSCEEEEEEEEETTEEEEEEEEECSSGGGT----------TCCC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCC-CCc--cceeEEEEEEEECCEEEEEEEEECCCchhh----------hhhh
Confidence 368999999999999999999997654322 222 444555666677764 6788999998732 2223
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..++..+|++++|+|+++..+..+. .+...+... ..+.|+++|+||+|+..............+...++ .++.+||+
T Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~-~~~d~Sal 150 (199)
T 2f9l_A 72 SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNL-SFIETSAL 150 (199)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-EEEECCTT
T ss_pred HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCC-eEEEEeCC
Confidence 4456789999999999876555442 233333332 24689999999999986554444444445555565 67899999
Q ss_pred CCCChHHHHHHhccchHHH
Q 007334 276 TGLGMTELYEALRPSVEDY 294 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~~~ 294 (607)
++.|++++++.|.+.+.+.
T Consensus 151 ~~~~i~~l~~~l~~~~~~~ 169 (199)
T 2f9l_A 151 DSTNVEEAFKNILTEIYRI 169 (199)
T ss_dssp TCTTHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999998877653
No 279
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.73 E-value=1.1e-19 Score=198.19 Aligned_cols=158 Identities=23% Similarity=0.308 Sum_probs=117.9
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee-CCeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL-GDLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.|+|+++|++|+|||||+|+|++.+.... ..++ +|.+.....+.+ .+..+.+|||||+.. +...+.
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~-~~~g--iT~~i~~~~v~~~~g~~i~~iDTPGhe~----------f~~~~~ 70 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAM-EAGG--ITQHIGAFLVSLPSGEKITFLDTPGHAA----------FSAMRA 70 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHHHS-SSCC--BCCCTTSCCBCSSCSSCCBCEECSSSCC----------TTTSBB
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccc-cCCc--eeEEEeEEEEEeCCCCEEEEEECCChHH----------HHHHHH
Confidence 57899999999999999999998775433 3455 788877766665 567899999999873 333334
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHH----hcC-CCCcEEee
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESL----MLG-FGDPIAIS 273 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~----~~~-~~~~i~iS 273 (607)
.++..+|++++|+|++++..++..+.+..+... +.|+|+|+||+|+................ ..+ ..+++++|
T Consensus 71 ~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~--~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vS 148 (537)
T 3izy_P 71 RGTQVTDIVILVVAADDGVMKQTVESIQHAKDA--HVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVS 148 (537)
T ss_dssp SSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTT--TCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCC
T ss_pred HHHccCCEEEEEEECCCCccHHHHHHHHHHHHc--CCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEE
Confidence 567889999999999999999988877777765 78999999999997543221111111110 011 11568999
Q ss_pred cCCCCChHHHHHHhccchH
Q 007334 274 AETGLGMTELYEALRPSVE 292 (607)
Q Consensus 274 A~~g~gi~eL~~~i~~~l~ 292 (607)
|++|.|+++|++.|...++
T Consensus 149 AktG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 149 ALTGENMMALAEATIALAE 167 (537)
T ss_dssp SSSSCSSHHHHHHHHHHHT
T ss_pred CCCCCCchhHHHHHHHhhh
Confidence 9999999999999886543
No 280
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.73 E-value=7.9e-18 Score=183.52 Aligned_cols=151 Identities=19% Similarity=0.210 Sum_probs=107.9
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceee------------------------------eccCCCCceeeeeEEEEeeeCC
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREAL------------------------------VYNTPDDHVTRDIREGLAKLGD 169 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~------------------------------v~~~~~~~~T~~~~~~~~~~~~ 169 (607)
..+|+++|++|+|||||+|+|++....+ .....| +|.+.....+...+
T Consensus 33 ~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~G--iTi~~~~~~~~~~~ 110 (483)
T 3p26_A 33 HLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERG--VTVSICTSHFSTHR 110 (483)
T ss_dssp EEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CC--SSCCCCEEEEECSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcC--cceEeeeEEEecCC
Confidence 4689999999999999999998652111 111234 78888888888889
Q ss_pred eeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCC-------CHhHHHHHHHHHhhCCCCcEEEEec
Q 007334 170 LRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGL-------HPLDLEVGKWLRKHAPQIKPIVAMN 242 (607)
Q Consensus 170 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~-------~~~~~~~~~~l~~~~~~~p~ilV~N 242 (607)
..+.||||||+. ++...+..++..+|++|+|+|++++. ..+..+....+... ...|+|+|+|
T Consensus 111 ~~~~iiDTPG~~----------~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~~~~iIvviN 179 (483)
T 3p26_A 111 ANFTIVDAPGHR----------DFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-GIHNLIIAMN 179 (483)
T ss_dssp CEEEEECCCCCG----------GGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-TCCCEEEEEE
T ss_pred ceEEEEECCCcH----------HHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-CCCcEEEEEE
Confidence 999999999998 56677788899999999999999873 34555555555554 2356999999
Q ss_pred CCCcccCCcCcHHHH----HHHHHhcCCC----CcEEeecCCCCChHHH
Q 007334 243 KCESLHNGTGSLAGA----AAESLMLGFG----DPIAISAETGLGMTEL 283 (607)
Q Consensus 243 K~D~~~~~~~~~~~~----~~~~~~~~~~----~~i~iSA~~g~gi~eL 283 (607)
|+|+........++. ...+..+++. +++++||++|.|++++
T Consensus 180 K~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 180 KMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp CGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred CcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence 999986432222221 2223334442 5699999999999863
No 281
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.73 E-value=4.4e-18 Score=177.57 Aligned_cols=123 Identities=21% Similarity=0.259 Sum_probs=90.6
Q ss_pred ccCCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHH
Q 007334 117 INLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGM 196 (607)
Q Consensus 117 ~~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~ 196 (607)
+.+..+|+|||+||||||||||+|++.+ +.+.+.|+ +|++...+.+.+.+.++.++||||+......+. ....+
T Consensus 69 k~g~a~V~ivG~PNvGKSTL~n~Lt~~~-~~v~~~pf--tT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~---~~g~~ 142 (376)
T 4a9a_A 69 RTGVASVGFVGFPSVGKSTLLSKLTGTE-SEAAEYEF--TTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGR---GRGKQ 142 (376)
T ss_dssp BCSSEEEEEECCCCHHHHHHHHHHHSBC-CCGGGTCS--SCCCEEEEEEEETTEEEEEEECGGGCCC--------CHHHH
T ss_pred ecCCCeEEEECCCCCCHHHHHHHHhCCC-CcccCCCC--ceeeeeeEEEEeCCcEEEEEeCCCccCCchhhh---HHHHH
Confidence 3456799999999999999999999976 55788888 999999999999999999999999985433221 23456
Q ss_pred HHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhh---CCCCcEEEEecCCCc
Q 007334 197 TANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH---APQIKPIVAMNKCES 246 (607)
Q Consensus 197 ~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~---~~~~p~ilV~NK~D~ 246 (607)
++..++.||++++|+|++++....+ .+...|... ...+|.++++||+|.
T Consensus 143 ~l~~i~~ad~il~vvD~~~p~~~~~-~i~~EL~~~~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 143 VIAVARTCNLLFIILDVNKPLHHKQ-IIEKELEGVGIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp HHHHHHHCSEEEEEEETTSHHHHHH-HHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred HHHHHHhcCccccccccCccHHHHH-HHHHHHHHhhHhhccCChhhhhhHhhh
Confidence 7788999999999999987543222 122223222 124566666777664
No 282
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.73 E-value=1.9e-17 Score=173.40 Aligned_cols=159 Identities=20% Similarity=0.249 Sum_probs=104.5
Q ss_pred Cce-EEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 324 PLQ-LAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 324 ~~~-v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+++ |+++|++|||||||+|+|++.. ..+.+.+++|+|+....+.++|..+.+|||||+.+.......+.+ ..+...
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~-~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f--~~tl~~ 254 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLT-QKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAF--FVTLSE 254 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC------------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHH--HHHHHG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCC-ccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHH--HHHHHH
Confidence 345 9999999999999999999875 577889999999999999999999999999997554222222222 345567
Q ss_pred HhhccEEEEEeccchhh------------HH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 403 LMRAHVVALVLDAEEVR------------AV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 403 i~~ad~~llViD~~~~~------------~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
+..||++++|+|++++. .+ ..++|+|+|+||+|+.+.. .......+ ..+...+. ...
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~-----~~l~~~l~-~~~ 327 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGD-LYKKLDLV-----EKLSKELY-SPI 327 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSC-HHHHHHHH-----HHHHHHHC-SCE
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCch-HHHHHHHH-----HHHHHHhc-CCC
Confidence 78899999999987531 11 1468999999999997642 11111111 01111110 113
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
.+++++||++|.|++++++.|.+.+.
T Consensus 328 ~~~~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 328 FDVIPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCcCHHHHHHHHHHHhc
Confidence 46899999999999999998877654
No 283
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.73 E-value=6e-18 Score=175.12 Aligned_cols=156 Identities=19% Similarity=0.227 Sum_probs=106.2
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEE--EEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVY--LVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~--liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.++|+++|.+|||||||++++++.. ....+.+|+.+.....+..++..+. ||||||+.+... ....
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~~~~ 222 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYTTNA--FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDR----------LRPL 222 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSC--CCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTT----------TGGG
T ss_pred eeEEEEECCCCCChHHHHHHHHhCC--CCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhH----------HHHH
Confidence 5899999999999999999999763 3456677888877777778777655 999999755421 1123
Q ss_pred HHhhccEEEEEeccchhh-----------HH---hcCCcEEEEEeCccCCCCcCchHHHHHH-HHhcHHHHHhhCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEVR-----------AV---EEGRGLVVIVNKMDLLSGRQNSALYKRV-KEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~~-----------~~---~~~~p~ivv~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 466 (607)
++..+|++++|+|+++.. .. ..++|+++|+||+|+.+.....+.+... .+.+..+....++...+
T Consensus 223 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 302 (332)
T 2wkq_A 223 SYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 302 (332)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred hccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcC
Confidence 567899999999998751 01 1279999999999997542111110000 00111111111111124
Q ss_pred C-CEEEcccCCCCCHHHHHHHHHHHH
Q 007334 467 I-PVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 467 ~-~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
. +++++||++|.|++++|+.+.+.+
T Consensus 303 ~~~~~~~Sa~~~~gi~~l~~~l~~~~ 328 (332)
T 2wkq_A 303 AVKYLECSALTQRGLKTVFDEAIRAV 328 (332)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCcCHHHHHHHHHHHH
Confidence 3 899999999999999999988754
No 284
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.73 E-value=1e-17 Score=182.15 Aligned_cols=154 Identities=21% Similarity=0.223 Sum_probs=104.4
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCc------eeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDR------VLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVM 397 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~------~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~ 397 (607)
.++|+++|++|+|||||+|+|++.+. ...+..+|+|.+.....+.+++..+.||||||+.++ ..
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~----------~~ 88 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADL----------IR 88 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHH----------HH
T ss_pred CCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHH----------HH
Confidence 57999999999999999999998651 344567789988877778889999999999996432 13
Q ss_pred HHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 398 QSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 398 ~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
.+..++..+|++|+|+|++++ .....++|+|+|+||+|+.+.. .++.+.+.+...+... ......
T Consensus 89 ~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~----~~~~~~~~l~~~l~~~-~~~~~~ 163 (482)
T 1wb1_A 89 AVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTE----EIKRTEMIMKSILQST-HNLKNS 163 (482)
T ss_dssp HHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHH----HHHHHHHHHHHHHHHS-SSGGGC
T ss_pred HHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccch----hHHHHHHHHHHHHhhh-cccccc
Confidence 345677889999999999874 2234589999999999998632 1222222222222211 011257
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
+++++||++|.|+++|++.|.+.+.
T Consensus 164 ~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 164 SIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHHhhc
Confidence 9999999999999999998887654
No 285
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.72 E-value=1.5e-17 Score=181.41 Aligned_cols=150 Identities=22% Similarity=0.268 Sum_probs=104.0
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCC------------------------------ceeecCCCCceeeeEEEEEEEcCe
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQED------------------------------RVLVGPEAGLTRDSVRVHFEYQGR 372 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~------------------------------~~~~~~~~gtT~~~~~~~~~~~~~ 372 (607)
..++|+++|++|+|||||+|+|++.. ........|+|.+.....+...+.
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 111 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 111 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence 35899999999999999999998651 122334568999988888888899
Q ss_pred EEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh-----------------hHHhcC-CcEEEEEeCc
Q 007334 373 TVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV-----------------RAVEEG-RGLVVIVNKM 434 (607)
Q Consensus 373 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~-----------------~~~~~~-~p~ivv~NK~ 434 (607)
.+.||||||+.++. ..+..++..||++|+|+|++++ .....+ .|+|+|+||+
T Consensus 112 ~~~iiDTPG~~~f~----------~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~ 181 (483)
T 3p26_A 112 NFTIVDAPGHRDFV----------PNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKM 181 (483)
T ss_dssp EEEEECCCCCGGGH----------HHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECG
T ss_pred eEEEEECCCcHHHH----------HHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECc
Confidence 99999999975441 3445778899999999999873 111234 5699999999
Q ss_pred cCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHHH
Q 007334 435 DLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVM 484 (607)
Q Consensus 435 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~ 484 (607)
|+.+.. ...++.+.+.+...+...-.....++++++||++|.|++++.
T Consensus 182 Dl~~~~--~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~ 229 (483)
T 3p26_A 182 DNVDWS--QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE 229 (483)
T ss_dssp GGGTTC--HHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSC
T ss_pred Ccccch--HHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccccC
Confidence 998632 223333333333222222111225689999999999998653
No 286
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.72 E-value=2.3e-17 Score=175.89 Aligned_cols=163 Identities=13% Similarity=0.059 Sum_probs=107.0
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCC------------CceeeeeE-----EEEeeeCCeeEEEecCCCCc
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPD------------DHVTRDIR-----EGLAKLGDLRFKVLDSAGLE 181 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~------------~~~T~~~~-----~~~~~~~~~~~~liDTpG~~ 181 (607)
...+|+++|++|+|||||+|+|++........... ...+.+.. ..........+.+|||||+.
T Consensus 7 ~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~ 86 (403)
T 3sjy_A 7 PEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHE 86 (403)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcH
Confidence 35799999999999999999999843211000000 00000000 00001122689999999987
Q ss_pred cccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCC-CHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCc--HHHHH
Q 007334 182 TEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGL-HPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGS--LAGAA 258 (607)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~-~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~--~~~~~ 258 (607)
++...+...+..+|++++|+|++++. ..+..++...+.... ..|+++|+||+|+....... .++..
T Consensus 87 ----------~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~-~~~iivviNK~Dl~~~~~~~~~~~~i~ 155 (403)
T 3sjy_A 87 ----------VLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG-VKNLIIVQNKVDVVSKEEALSQYRQIK 155 (403)
T ss_dssp ----------GGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT-CCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC-CCCEEEEEECccccchHHHHHHHHHHH
Confidence 56667778899999999999999987 556566666666552 35899999999998642110 11111
Q ss_pred HHHHhcC--CCCcEEeecCCCCChHHHHHHhccchH
Q 007334 259 AESLMLG--FGDPIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 259 ~~~~~~~--~~~~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
..+...+ ..+++++||++|.|+++|++.|.+.++
T Consensus 156 ~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 156 QFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp HHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence 1111122 226899999999999999999987554
No 287
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.72 E-value=1.7e-17 Score=178.43 Aligned_cols=155 Identities=19% Similarity=0.182 Sum_probs=109.5
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeecc----------CCC--------------------CceeeeeEEEEeeeCC
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYN----------TPD--------------------DHVTRDIREGLAKLGD 169 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~----------~~~--------------------~~~T~~~~~~~~~~~~ 169 (607)
..+|+++|++|+|||||+|+|++....+..+ .++ .+.|.+..+..+...+
T Consensus 24 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~ 103 (434)
T 1zun_B 24 MLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAK 103 (434)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSS
T ss_pred ceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecCC
Confidence 4689999999999999999998764222111 111 1256666666677788
Q ss_pred eeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCC-cEEEEecCCCccc
Q 007334 170 LRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQI-KPIVAMNKCESLH 248 (607)
Q Consensus 170 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~-p~ilV~NK~D~~~ 248 (607)
..+.+|||||+. ++...+..++..+|++|+|+|++++...+..+....+... +. |+|+|+||+|+..
T Consensus 104 ~~~~iiDtpGh~----------~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~--~~~~iIvviNK~Dl~~ 171 (434)
T 1zun_B 104 RKFIIADTPGHE----------QYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLL--GIKHIVVAINKMDLNG 171 (434)
T ss_dssp EEEEEEECCCSG----------GGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHT--TCCEEEEEEECTTTTT
T ss_pred ceEEEEECCChH----------HHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCeEEEEEEcCcCCc
Confidence 899999999988 4445566788999999999999999888877666666655 44 5899999999976
Q ss_pred CCcCcH----HHHHHHHHhcC--C--CCcEEeecCCCCChHHHHHH
Q 007334 249 NGTGSL----AGAAAESLMLG--F--GDPIAISAETGLGMTELYEA 286 (607)
Q Consensus 249 ~~~~~~----~~~~~~~~~~~--~--~~~i~iSA~~g~gi~eL~~~ 286 (607)
...... .+....+..++ . .+++++||++|.|++++++.
T Consensus 172 ~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~ 217 (434)
T 1zun_B 172 FDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSER 217 (434)
T ss_dssp SCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTT
T ss_pred ccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccccc
Confidence 321111 11222334455 2 25799999999999986543
No 288
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.72 E-value=1.4e-17 Score=174.97 Aligned_cols=147 Identities=19% Similarity=0.138 Sum_probs=111.9
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHh
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVL 201 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 201 (607)
+|+++|++|+|||||+|+|+. .+ +|.+..+..+.+.+..+.+|||||+. ++...+...+
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~---------~g--iTi~~~~~~~~~~~~~i~iiDtPGh~----------~f~~~~~~~~ 81 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGK---------KG--TSSDITMYNNDKEGRNMVFVDAHSYP----------KTLKSLITAL 81 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSE---------EE--EESSSEEEEECSSSSEEEEEECTTTT----------TCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh---------CC--EEEEeeEEEEecCCeEEEEEECCChH----------HHHHHHHHHH
Confidence 899999999999999999981 23 67777777777788899999999998 4555566778
Q ss_pred hccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcE-EEEec-CCCcccCCcCcH--HHHHHHHHhcCC--CCcEE--ee
Q 007334 202 AKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKP-IVAMN-KCESLHNGTGSL--AGAAAESLMLGF--GDPIA--IS 273 (607)
Q Consensus 202 ~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~-ilV~N-K~D~~~~~~~~~--~~~~~~~~~~~~--~~~i~--iS 273 (607)
..+|++|+|+| +.+...+..+....+... +.|. |+|+| |+|+ ..+.... ++....+...++ .++++ +|
T Consensus 82 ~~aD~ailVvd-~~g~~~qt~e~~~~~~~~--~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~S 157 (370)
T 2elf_A 82 NISDIAVLCIP-PQGLDAHTGECIIALDLL--GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTN 157 (370)
T ss_dssp HTCSEEEEEEC-TTCCCHHHHHHHHHHHHT--TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCC
T ss_pred HHCCEEEEEEc-CCCCcHHHHHHHHHHHHc--CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccc
Confidence 99999999999 888888777777777665 6787 89999 9998 4211110 111111222222 26799 99
Q ss_pred cCC---CCChHHHHHHhccchHH
Q 007334 274 AET---GLGMTELYEALRPSVED 293 (607)
Q Consensus 274 A~~---g~gi~eL~~~i~~~l~~ 293 (607)
|++ |.|+++|++.|.+.++.
T Consensus 158 A~~~~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 158 KSAKNPFEGVDELKARINEVAEK 180 (370)
T ss_dssp TTSSSTTTTHHHHHHHHHHHHHH
T ss_pred cccCcCCCCHHHHHHHHHhhccc
Confidence 999 99999999999887764
No 289
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.72 E-value=4.9e-18 Score=174.93 Aligned_cols=173 Identities=18% Similarity=0.235 Sum_probs=106.3
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccce-----eeeccCCCC-ceeeee--------------------------------
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRRE-----ALVYNTPDD-HVTRDI-------------------------------- 160 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~-----~~v~~~~~~-~~T~~~-------------------------------- 160 (607)
..|+|+|+|.+|||||||+|+|++... ..+...|+. .++++.
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEI 102 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHH
Confidence 468999999999999999999999875 333333310 022210
Q ss_pred ------E------------EE-EeeeCCeeEEEecCCCCccccC---chhHHHHHHHHHHHHhhccCEEEEEEec-CCCC
Q 007334 161 ------R------------EG-LAKLGDLRFKVLDSAGLETEAT---SGSILDRTAGMTANVLAKTQFAIFMIDV-RSGL 217 (607)
Q Consensus 161 ------~------------~~-~~~~~~~~~~liDTpG~~~~~~---~~~~~~~~~~~~~~~~~~ad~vl~VvD~-s~~~ 217 (607)
. .- .....+..+.+|||||+..... .......+...+..++..+|++++|+|+ +.+.
T Consensus 103 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~ 182 (315)
T 1jwy_B 103 IRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL 182 (315)
T ss_dssp HHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS
T ss_pred HHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcch
Confidence 0 00 0111346899999999974210 0122234667788899999999999997 4455
Q ss_pred CHhH-HHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHh--cCCCCcEEeecCC---CCChHHHHHHhccch
Q 007334 218 HPLD-LEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLM--LGFGDPIAISAET---GLGMTELYEALRPSV 291 (607)
Q Consensus 218 ~~~~-~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~--~~~~~~i~iSA~~---g~gi~eL~~~i~~~l 291 (607)
...+ ..+.+++... +.|+++|+||+|+................. .++.+++.+||.+ +.|+.++++.+.+.+
T Consensus 183 ~~~~~~~i~~~~~~~--~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~ 260 (315)
T 1jwy_B 183 ANSDALQLAKEVDPE--GKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYF 260 (315)
T ss_dssp TTCSHHHHHHHHCSS--CSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhCCC--CCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHH
Confidence 5444 3567777654 789999999999986543211111110111 1222334555666 899999999988777
Q ss_pred HH
Q 007334 292 ED 293 (607)
Q Consensus 292 ~~ 293 (607)
+.
T Consensus 261 ~~ 262 (315)
T 1jwy_B 261 KN 262 (315)
T ss_dssp HT
T ss_pred hC
Confidence 53
No 290
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.72 E-value=6.8e-18 Score=180.10 Aligned_cols=159 Identities=18% Similarity=0.094 Sum_probs=115.3
Q ss_pred CCEEEEecCCCCchhHHHHHhhccc--------eeee--cc------CCCCceeeeeEEEEeeeCCeeEEEecCCCCccc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRR--------EALV--YN------TPDDHVTRDIREGLAKLGDLRFKVLDSAGLETE 183 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~--------~~~v--~~------~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~ 183 (607)
..+|+++|++|+|||||+|+|++.. +... .+ ..+ +|.+.....+...+..+.+|||||+.
T Consensus 11 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~G--iTi~~~~~~~~~~~~~~~iiDtpG~~-- 86 (405)
T 2c78_A 11 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARG--ITINTAHVEYETAKRHYSHVDCPGHA-- 86 (405)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHT--CCCSCEEEEEECSSCEEEEEECCCSG--
T ss_pred eEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcC--CCEEeeeeEeccCCeEEEEEECCChH--
Confidence 4689999999999999999999731 0000 00 233 66676666666678899999999998
Q ss_pred cCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCc-EEEEecCCCcccCCcC---cHHHHHH
Q 007334 184 ATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIK-PIVAMNKCESLHNGTG---SLAGAAA 259 (607)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p-~ilV~NK~D~~~~~~~---~~~~~~~ 259 (607)
++...+..++..+|++|+|+|++++...+..++...+... +.| +++|+||+|+...... ...+...
T Consensus 87 --------~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~--~ip~iivviNK~Dl~~~~~~~~~~~~~~~~ 156 (405)
T 2c78_A 87 --------DYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV--GVPYIVVFMNKVDMVDDPELLDLVEMEVRD 156 (405)
T ss_dssp --------GGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGCCCHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCEEEEEEECccccCcHHHHHHHHHHHHH
Confidence 4556667788999999999999999888877777777665 678 8899999999852110 0112223
Q ss_pred HHHhcCC----CCcEEeecCCCCC------------------hHHHHHHhccchH
Q 007334 260 ESLMLGF----GDPIAISAETGLG------------------MTELYEALRPSVE 292 (607)
Q Consensus 260 ~~~~~~~----~~~i~iSA~~g~g------------------i~eL~~~i~~~l~ 292 (607)
.+...++ .+++++||++|.| +++|++.|.+.++
T Consensus 157 ~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 157 LLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp HHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred HHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 3444554 3689999999987 6677777665443
No 291
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.72 E-value=1.2e-17 Score=168.74 Aligned_cols=157 Identities=18% Similarity=0.234 Sum_probs=87.9
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecC-------CCCceeeeEEEEEEEcCe--EEEEEecCCCcccccc-cCcch
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGP-------EAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKE-KGPAS 393 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~-------~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~-~~~~~ 393 (607)
.++|+++|.+|+|||||+|+|++.+...... .++++.+.....+..++. .+.||||||+.+.... .....
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~ 87 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP 87 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHH
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHH
Confidence 4799999999999999999999887655443 455566666555555554 8899999998655211 11111
Q ss_pred ---hHHHHHHHHHhh-------------ccEEEEEeccch-h---------hHHhcCCcEEEEEeCccCCCCcCchHHHH
Q 007334 394 ---LSVMQSRKNLMR-------------AHVVALVLDAEE-V---------RAVEEGRGLVVIVNKMDLLSGRQNSALYK 447 (607)
Q Consensus 394 ---~~~~~~~~~i~~-------------ad~~llViD~~~-~---------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~ 447 (607)
+...+...++.. +|++++++|.+. + ..+..++|+|+|+||+|+....+..
T Consensus 88 i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~~~pvi~V~nK~D~~~~~e~~---- 163 (274)
T 3t5d_A 88 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQ---- 163 (274)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTTTSCEEEEESSGGGSCHHHHH----
T ss_pred HHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhccCCEEEEEeccCCCCHHHHH----
Confidence 111222334443 789999997654 2 2223489999999999997543222
Q ss_pred HHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHH
Q 007334 448 RVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVID 489 (607)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~ 489 (607)
...+.+...+.. .+++++++||++|.|++++++.+.+
T Consensus 164 ~~~~~i~~~l~~-----~~i~v~~~sa~~~~~~~~l~~~l~~ 200 (274)
T 3t5d_A 164 QFKKQIMKEIQE-----HKIKIYEFPETDDEEENKLVKKIKD 200 (274)
T ss_dssp HHHHHHHHHHHH-----TTCCCCCC-----------CHHHHH
T ss_pred HHHHHHHHHHHH-----cCCeEEcCCCCCChhHHHHHHHHhc
Confidence 222222223222 3678899999999999988877655
No 292
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.72 E-value=2.2e-17 Score=176.36 Aligned_cols=160 Identities=19% Similarity=0.094 Sum_probs=110.3
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeee--ccCCCCceeeeeEEEEeeeC-----------------------CeeEEE
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALV--YNTPDDHVTRDIREGLAKLG-----------------------DLRFKV 174 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v--~~~~~~~~T~~~~~~~~~~~-----------------------~~~~~l 174 (607)
..+|+++|++|+|||||+++|++...... ...++ +|.+..+....+. ...+.+
T Consensus 10 ~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~g--iTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 87 (410)
T 1kk1_A 10 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRG--ITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 87 (410)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSC--SSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCC--cEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence 46899999999999999999997532211 11234 5665544433321 167999
Q ss_pred ecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCC-CHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcC-
Q 007334 175 LDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGL-HPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTG- 252 (607)
Q Consensus 175 iDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~-~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~- 252 (607)
|||||+. ++.......+..+|++|+|+|++++. ..+..+.+..+.... ..|+++|+||+|+......
T Consensus 88 iDtPGh~----------~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~-~~~iivviNK~Dl~~~~~~~ 156 (410)
T 1kk1_A 88 IDAPGHE----------ALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG-QKNIIIAQNKIELVDKEKAL 156 (410)
T ss_dssp EECSSHH----------HHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT-CCCEEEEEECGGGSCHHHHH
T ss_pred EECCChH----------HHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcC-CCcEEEEEECccCCCHHHHH
Confidence 9999987 56666677788999999999999986 666666555555542 3579999999999864210
Q ss_pred -cHHHHHHHHHhc--CCCCcEEeecCCCCChHHHHHHhccchH
Q 007334 253 -SLAGAAAESLML--GFGDPIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 253 -~~~~~~~~~~~~--~~~~~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
..++....+... ...+++++||++|.|+++|++.|.+.++
T Consensus 157 ~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 157 ENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 111111122111 1227899999999999999999987554
No 293
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.71 E-value=4.2e-17 Score=174.06 Aligned_cols=160 Identities=16% Similarity=0.071 Sum_probs=103.2
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeec--cCCCCceeeeeEEEEeee---------------C--------CeeEEE
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVY--NTPDDHVTRDIREGLAKL---------------G--------DLRFKV 174 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~--~~~~~~~T~~~~~~~~~~---------------~--------~~~~~l 174 (607)
..+|+++|++|+|||||+++|++....... ..++ .|.+..+....+ . ...+.+
T Consensus 8 ~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~g--iTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 8 EVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRG--ISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CEEEEEESCTTSSHHHHHHHHHSCCCCC-------C--CCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCC--cEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 578999999999999999999975321111 1233 565554333222 1 167999
Q ss_pred ecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCC-CHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcC-
Q 007334 175 LDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGL-HPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTG- 252 (607)
Q Consensus 175 iDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~-~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~- 252 (607)
|||||+. ++.......+..+|++|+|+|++++. ..+..+.+..++.. ...|+++|+||+|+......
T Consensus 86 iDtPGh~----------~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l-~~~~iivv~NK~Dl~~~~~~~ 154 (408)
T 1s0u_A 86 VDSPGHE----------TLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL-GIDKIIIVQNKIDLVDEKQAE 154 (408)
T ss_dssp EECSSHH----------HHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT-TCCCEEEEEECTTSSCTTTTT
T ss_pred EECCCHH----------HHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc-CCCeEEEEEEccCCCCHHHHH
Confidence 9999987 55555666778889999999999986 66665555555544 23589999999999865421
Q ss_pred -cHHHHHHHHHhc--CCCCcEEeecCCCCChHHHHHHhccchH
Q 007334 253 -SLAGAAAESLML--GFGDPIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 253 -~~~~~~~~~~~~--~~~~~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
..++....+... ...+++++||++|.|+++|++.|.+.++
T Consensus 155 ~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 155 ENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp THHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 122222222221 1226899999999999999999987553
No 294
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.71 E-value=7.9e-19 Score=195.15 Aligned_cols=161 Identities=19% Similarity=0.231 Sum_probs=90.6
Q ss_pred ccCCCEEEEecCCCCchhHHHHHhhccceeeecc------------------------------CCCCceeeeeEEEEee
Q 007334 117 INLLPTVMIIGRPNVGKSALFNRLIRRREALVYN------------------------------TPDDHVTRDIREGLAK 166 (607)
Q Consensus 117 ~~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~------------------------------~~~~~~T~~~~~~~~~ 166 (607)
.+...+|+|+|++|+|||||+|+|++....+..+ .+| +|.+.....+.
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~G--iTid~~~~~~~ 251 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARG--VTMDVASTTFE 251 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCC--eeEEeeEEEEE
Confidence 3445789999999999999999998643322211 234 88888888888
Q ss_pred eCCeeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCC-------CHhHHHHHHHHHhhCCCCc-EE
Q 007334 167 LGDLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGL-------HPLDLEVGKWLRKHAPQIK-PI 238 (607)
Q Consensus 167 ~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~-------~~~~~~~~~~l~~~~~~~p-~i 238 (607)
..+..+.||||||+.... ..+...+..+|++|+|+|++++. ..+..+....+... ++| +|
T Consensus 252 ~~~~~i~iiDTPGh~~f~----------~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l--gip~iI 319 (592)
T 3mca_A 252 SDKKIYEIGDAPGHRDFI----------SGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL--GISEIV 319 (592)
T ss_dssp -------CCEEESSSEEE----------EECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS--SCCCEE
T ss_pred eCCeEEEEEECCChHHHH----------HHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc--CCCeEE
Confidence 888999999999998332 22334567899999999999864 55666666666665 566 89
Q ss_pred EEecCCCcccCCcCcHHH---H-HHHH-HhcCCC----CcEEeecCCCCChH--------------HHHHHhccch
Q 007334 239 VAMNKCESLHNGTGSLAG---A-AAES-LMLGFG----DPIAISAETGLGMT--------------ELYEALRPSV 291 (607)
Q Consensus 239 lV~NK~D~~~~~~~~~~~---~-~~~~-~~~~~~----~~i~iSA~~g~gi~--------------eL~~~i~~~l 291 (607)
+|+||+|+.......... . ...+ ...++. +++++||++|.|+. .|++.|...+
T Consensus 320 vviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~ 395 (592)
T 3mca_A 320 VSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLV 395 (592)
T ss_dssp EEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSC
T ss_pred EEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhc
Confidence 999999997622111111 1 1222 234553 57999999999998 6777766543
No 295
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.71 E-value=2.5e-17 Score=175.13 Aligned_cols=158 Identities=16% Similarity=0.115 Sum_probs=116.2
Q ss_pred CEEEEecCCCCchhHHHHHhhcccee----e-----------eccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccC
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREA----L-----------VYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEAT 185 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~----~-----------v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~ 185 (607)
.+|+++|++|+|||||+++|++.... . .....+ .|.+.....+...+..+.+|||||+.
T Consensus 4 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g--iTi~~~~~~~~~~~~~~~iiDtpG~~---- 77 (397)
T 1d2e_A 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARG--ITINAAHVEYSTAARHYAHTDCPGHA---- 77 (397)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETT--EEEECEEEEEECSSCEEEEEECSSHH----
T ss_pred EEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcC--cEEEeeeEEeccCCeEEEEEECCChH----
Confidence 57999999999999999999974110 0 001234 67777666666677899999999998
Q ss_pred chhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCc-EEEEecCCCcccCCcC---cHHHHHHHH
Q 007334 186 SGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIK-PIVAMNKCESLHNGTG---SLAGAAAES 261 (607)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p-~ilV~NK~D~~~~~~~---~~~~~~~~~ 261 (607)
++...+..++..+|++|+|+|++++...+..+....++.. +.| +++|+||+|+...... ...+....+
T Consensus 78 ------~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~--~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l 149 (397)
T 1d2e_A 78 ------DYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQI--GVEHVVVYVNKADAVQDSEMVELVELEIRELL 149 (397)
T ss_dssp ------HHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHT--TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHc--CCCeEEEEEECcccCCCHHHHHHHHHHHHHHH
Confidence 5666777888999999999999999888877766777665 678 6899999999752110 011222334
Q ss_pred HhcCC----CCcEEeecCCCCC----------hHHHHHHhccchH
Q 007334 262 LMLGF----GDPIAISAETGLG----------MTELYEALRPSVE 292 (607)
Q Consensus 262 ~~~~~----~~~i~iSA~~g~g----------i~eL~~~i~~~l~ 292 (607)
...++ .+++++||++|.| +++|++.|.+.++
T Consensus 150 ~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 150 TEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp HHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred HHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 44554 2679999999774 8888888876554
No 296
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.71 E-value=4e-17 Score=170.32 Aligned_cols=109 Identities=21% Similarity=0.236 Sum_probs=88.3
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
..+|+|||.||||||||+|+|++.. ..++++|+||+++..+.+.+.+.+++|+||||+.+... .+ .-...+++..+
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~-~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~-~~--~~~g~~~l~~i 147 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTE-SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAK-DG--RGRGKQVIAVA 147 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBC-CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC--------CHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCch-hh--hHHHHHHHHHH
Confidence 3589999999999999999999875 78899999999999999999999999999999976521 11 11235667889
Q ss_pred hhccEEEEEeccchh----h-----HH-----hcCCcEEEEEeCccC
Q 007334 404 MRAHVVALVLDAEEV----R-----AV-----EEGRGLVVIVNKMDL 436 (607)
Q Consensus 404 ~~ad~~llViD~~~~----~-----~~-----~~~~p~ivv~NK~Dl 436 (607)
+.||++++|+|++++ . .. ...+|.++++||+|.
T Consensus 148 ~~ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 148 RTCNLLFIILDVNKPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp HHCSEEEEEEETTSHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred HhcCccccccccCccHHHHHHHHHHHHHhhHhhccCChhhhhhHhhh
Confidence 999999999999986 0 00 125688888999886
No 297
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.71 E-value=3.6e-17 Score=168.43 Aligned_cols=180 Identities=16% Similarity=0.173 Sum_probs=111.6
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCc-----eeecCCC---Cceee----------------------------------
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDR-----VLVGPEA---GLTRD---------------------------------- 361 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~-----~~~~~~~---gtT~~---------------------------------- 361 (607)
.++|+|+|.+|||||||+|+|+|... ..++..| .++++
T Consensus 24 ~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 103 (315)
T 1jwy_B 24 LPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEII 103 (315)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHHH
Confidence 36899999999999999999998865 3344444 22222
Q ss_pred ----------------eEEEEEEE-cCeEEEEEecCCCccccc---ccCcchhHHHHHHHHHhhccEEEEEeccch-h--
Q 007334 362 ----------------SVRVHFEY-QGRTVYLVDTAGWLQREK---EKGPASLSVMQSRKNLMRAHVVALVLDAEE-V-- 418 (607)
Q Consensus 362 ----------------~~~~~~~~-~~~~~~liDTpG~~~~~~---~~~~~~~~~~~~~~~i~~ad~~llViD~~~-~-- 418 (607)
.....+.. ++.++.||||||+.+... ...........+..++..+|++++|+|++. .
T Consensus 104 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~ 183 (315)
T 1jwy_B 104 RDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLA 183 (315)
T ss_dssp HHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCST
T ss_pred HHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchh
Confidence 00111111 346899999999865311 112333445667789999999999999732 2
Q ss_pred ---------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCC--CCCCCEEEcccCC---CCCHHHHH
Q 007334 419 ---------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQ--VTGIPVVFTSALE---GRGRIAVM 484 (607)
Q Consensus 419 ---------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~iSA~~---g~gv~~l~ 484 (607)
.....++|+++|+||+|+.+.... ..+ .+...+.. ..+++++.+||.+ +.|+.+++
T Consensus 184 ~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~~~--~~~--------~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~ 253 (315)
T 1jwy_B 184 NSDALQLAKEVDPEGKRTIGVITKLDLMDKGTD--AME--------VLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESL 253 (315)
T ss_dssp TCSHHHHHHHHCSSCSSEEEEEECTTSSCSSCC--CHH--------HHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHH
T ss_pred hhHHHHHHHHhCCCCCcEEEEEcCcccCCcchH--HHH--------HHhCCCccCCCCeEEEecCChhhhccCCCHHHHH
Confidence 111247899999999999865321 111 11111111 2234455566666 89999999
Q ss_pred HHHHHHHHH------HhcCCChHHHHHHHHHHHHh
Q 007334 485 HQVIDTYQK------WCLRLPTSRLNRWLRKVMGR 513 (607)
Q Consensus 485 ~~i~~~~~~------~~~~~~~~~l~~~l~~~~~~ 513 (607)
+.+.+.+.. +..+.++..++.++++.+..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~lre~l~~ 288 (315)
T 1jwy_B 254 KSEILYFKNHPIYKSIANRSGTAYLSKTLNKLLMF 288 (315)
T ss_dssp HHHHHHHHTCTTGGGSGGGCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCccccchhccCHHHHHHHHHHHHHH
Confidence 988776543 33466788898888877654
No 298
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.71 E-value=1.3e-17 Score=182.67 Aligned_cols=106 Identities=23% Similarity=0.345 Sum_probs=83.5
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCcee---------------------ecCCCCceeeeEEEEEEEcCeEEEEEecCCC
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVL---------------------VGPEAGLTRDSVRVHFEYQGRTVYLVDTAGW 382 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~---------------------~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~ 382 (607)
..+|+|+|++|+|||||+|+|++....+ .....|+|.+.....+.+.+..+.||||||+
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~ 92 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGH 92 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCc
Confidence 4689999999999999999997322111 1123677888777888999999999999998
Q ss_pred cccccccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCC
Q 007334 383 LQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSG 439 (607)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~ 439 (607)
.++. ..+..+++.+|++|+|+|++++ .....++|+++|+||+|+...
T Consensus 93 ~df~----------~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 93 ADFT----------EDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTR 149 (528)
T ss_dssp TTCC----------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCS
T ss_pred hhHH----------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccc
Confidence 6653 2356788899999999999975 233468999999999999754
No 299
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.71 E-value=6.3e-18 Score=188.43 Aligned_cols=153 Identities=19% Similarity=0.210 Sum_probs=111.3
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeecc------------------------------CCCCceeeeeEEEEeeeC
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYN------------------------------TPDDHVTRDIREGLAKLG 168 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~------------------------------~~~~~~T~~~~~~~~~~~ 168 (607)
...+|++||++|||||||+|+|++....+..+ .+| +|.+.....+...
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~G--iTid~~~~~~~~~ 243 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERG--VTVSICTSHFSTH 243 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTT--TCCSCSCCEEECS
T ss_pred CceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCC--eeEeeeeEEEecC
Confidence 35799999999999999999999764433221 134 7888888888888
Q ss_pred CeeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCC-------CCHhHHHHHHHHHhhCCCCcEEEEe
Q 007334 169 DLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSG-------LHPLDLEVGKWLRKHAPQIKPIVAM 241 (607)
Q Consensus 169 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~-------~~~~~~~~~~~l~~~~~~~p~ilV~ 241 (607)
+..+.||||||+. ++...+..++..+|++|+|+|++++ ...+..+....+... ...|+|+|+
T Consensus 244 ~~~~~iiDTPG~e----------~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l-gi~~iIVVv 312 (611)
T 3izq_1 244 RANFTIVDAPGHR----------DFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-GIHNLIIAM 312 (611)
T ss_dssp SCEEEEEECCSSS----------CHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT-TCCEEEEEE
T ss_pred CceEEEEECCCCc----------ccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc-CCCeEEEEE
Confidence 9999999999998 5667777889999999999999875 234444555555544 124599999
Q ss_pred cCCCcccCCcCcHH----HHHHHHHhcCC----CCcEEeecCCCCChHHHH
Q 007334 242 NKCESLHNGTGSLA----GAAAESLMLGF----GDPIAISAETGLGMTELY 284 (607)
Q Consensus 242 NK~D~~~~~~~~~~----~~~~~~~~~~~----~~~i~iSA~~g~gi~eL~ 284 (607)
||+|+......... .....+..+|+ .+++++||++|.|++++.
T Consensus 313 NKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~ 363 (611)
T 3izq_1 313 NKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE 363 (611)
T ss_dssp ECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCT
T ss_pred ecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccC
Confidence 99999863221111 12223334454 267999999999998763
No 300
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.2e-17 Score=186.23 Aligned_cols=150 Identities=22% Similarity=0.277 Sum_probs=106.0
Q ss_pred cCCceEEEEcCCCCchhHHHHHhhcCCceeecC------------------------------CCCceeeeEEEEEEEcC
Q 007334 322 KLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGP------------------------------EAGLTRDSVRVHFEYQG 371 (607)
Q Consensus 322 ~~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~------------------------------~~gtT~~~~~~~~~~~~ 371 (607)
...++|+++|++|+|||||+|+|++.......+ .+|+|++.....+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 346899999999999999999999764333221 36899998888888899
Q ss_pred eEEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh-----------------hHHhcCC-cEEEEEeC
Q 007334 372 RTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV-----------------RAVEEGR-GLVVIVNK 433 (607)
Q Consensus 372 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~-----------------~~~~~~~-p~ivv~NK 433 (607)
..+.||||||+.++. ..+..++..||++|+|+|++++ .....+. |+|+|+||
T Consensus 245 ~~~~iiDTPG~e~f~----------~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNK 314 (611)
T 3izq_1 245 ANFTIVDAPGHRDFV----------PNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNK 314 (611)
T ss_dssp CEEEEEECCSSSCHH----------HHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEEC
T ss_pred ceEEEEECCCCcccH----------HHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEec
Confidence 999999999975541 3344567789999999999873 1112354 59999999
Q ss_pred ccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHH
Q 007334 434 MDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAV 483 (607)
Q Consensus 434 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l 483 (607)
+|+.+.. ...++.+.+.+...+...-.....++++++||++|.|+.++
T Consensus 315 iDl~~~~--~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 315 MDNVDWS--QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp TTTTTTC--HHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred ccccchh--HHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 9998632 22233333333322222211122578999999999999765
No 301
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.71 E-value=1.1e-17 Score=184.92 Aligned_cols=157 Identities=17% Similarity=0.151 Sum_probs=102.1
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEE------Eee----eCCeeEEEecCCCCccccCchhH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREG------LAK----LGDLRFKVLDSAGLETEATSGSI 189 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~------~~~----~~~~~~~liDTpG~~~~~~~~~~ 189 (607)
..+|++||.+|||||||+|+|++..+... ..+. +..+.... .+. ..+..+.+|||||++...
T Consensus 41 ~~kV~lvG~~~vGKSSLl~~l~~~~~~~~-~~~t--~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~----- 112 (535)
T 3dpu_A 41 EIKVHLIGDGMAGKTSLLKQLIGETFDPK-ESQT--HGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMH----- 112 (535)
T ss_dssp EEEEEEESSSCSSHHHHHHHHHC--------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTT-----
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCC-CCCc--cceEEEEeccccccceeecCCCceEEEEEEECCcHHHHH-----
Confidence 36899999999999999999998764211 1111 11111111 111 125789999999987322
Q ss_pred HHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCc
Q 007334 190 LDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDP 269 (607)
Q Consensus 190 ~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~ 269 (607)
.....++..+|++|+|+|+++. .....+...+....++.|+|+|+||+|+........+.....+...+. ++
T Consensus 113 -----~~~~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~-~~ 184 (535)
T 3dpu_A 113 -----ASHQFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIEN-RF 184 (535)
T ss_dssp -----TTCHHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTT-CE
T ss_pred -----HHHHHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHHhcCC-ce
Confidence 2234567789999999999864 222345666666656799999999999987655544444445555565 68
Q ss_pred EEeecCCCCChHHHHHHhccchH
Q 007334 270 IAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 270 i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
+++||++|.|+++|++.|.+.+.
T Consensus 185 ~~vSA~~g~gi~eL~~~l~~~~~ 207 (535)
T 3dpu_A 185 HRISCKNGDGVESIAKSLKSAVL 207 (535)
T ss_dssp EECCC-----CTTHHHHHHHHHT
T ss_pred EEEecCcccCHHHHHHHHHHHHh
Confidence 99999999999999999987664
No 302
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.70 E-value=1.7e-18 Score=187.29 Aligned_cols=149 Identities=22% Similarity=0.241 Sum_probs=101.2
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCce------------------------------eecCCCCceeeeEEEEEEEcCeE
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRV------------------------------LVGPEAGLTRDSVRVHFEYQGRT 373 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~------------------------------~~~~~~gtT~~~~~~~~~~~~~~ 373 (607)
.++|+++|++|+|||||+|+|++.... ......|+|.+.....+..++..
T Consensus 7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~ 86 (458)
T 1f60_A 7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQ 86 (458)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEE
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCce
Confidence 479999999999999999999864100 01113688888777777888899
Q ss_pred EEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchhh-----------------HHhcCCc-EEEEEeCcc
Q 007334 374 VYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEVR-----------------AVEEGRG-LVVIVNKMD 435 (607)
Q Consensus 374 ~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~~-----------------~~~~~~p-~ivv~NK~D 435 (607)
+.||||||+.++. ..+..++..+|++|+|+|++++. ....++| +|+|+||+|
T Consensus 87 ~~iiDtPGh~~f~----------~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~D 156 (458)
T 1f60_A 87 VTVIDAPGHRDFI----------KNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMD 156 (458)
T ss_dssp EEEEECCCCTTHH----------HHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGG
T ss_pred EEEEECCCcHHHH----------HHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccc
Confidence 9999999975431 23446678899999999998641 1124666 999999999
Q ss_pred CCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHHH
Q 007334 436 LLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVM 484 (607)
Q Consensus 436 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~ 484 (607)
+.+.. .+.++.+.+.+...+...-.....++++++||++|.|+.++.
T Consensus 157 l~~~~--~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~ 203 (458)
T 1f60_A 157 SVKWD--ESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEAT 203 (458)
T ss_dssp GGTTC--HHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCC
T ss_pred cccCC--HHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccccc
Confidence 97421 122223323232222221111113789999999999997654
No 303
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.70 E-value=3.2e-17 Score=174.92 Aligned_cols=145 Identities=23% Similarity=0.244 Sum_probs=99.4
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcC---C----ce-e--------ecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccc
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQE---D----RV-L--------VGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQRE 386 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~---~----~~-~--------~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~ 386 (607)
..++|+++|++|+|||||+|+|++. . .+ . .....|+|.+.....+...+..+.||||||+.++.
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f~ 89 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYI 89 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGH
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHHH
Confidence 3579999999999999999999973 0 00 0 01246888888777777778899999999976541
Q ss_pred cccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCc-EEEEEeCccCCCCcCchHHHHHHHHhcHH
Q 007334 387 KEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRG-LVVIVNKMDLLSGRQNSALYKRVKEAVPQ 455 (607)
Q Consensus 387 ~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p-~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~ 455 (607)
..+..++..+|++|+|+|++++ .....++| +|+|+||+|+.+.. +.++.+.+.+..
T Consensus 90 ----------~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~---~~~~~~~~~~~~ 156 (405)
T 2c78_A 90 ----------KNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDP---ELLDLVEMEVRD 156 (405)
T ss_dssp ----------HHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCH---HHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcH---HHHHHHHHHHHH
Confidence 3345678899999999999875 22235788 89999999998531 122222222222
Q ss_pred HHHhhCCCCCCCCEEEcccCCCCCH
Q 007334 456 EIQTVIPQVTGIPVVFTSALEGRGR 480 (607)
Q Consensus 456 ~~~~~~~~~~~~~~v~iSA~~g~gv 480 (607)
.+...-.....+|++++||++|.|+
T Consensus 157 ~l~~~~~~~~~~~~i~~SA~~g~~v 181 (405)
T 2c78_A 157 LLNQYEFPGDEVPVIRGSALLALEQ 181 (405)
T ss_dssp HHHHTTSCTTTSCEEECCHHHHHHH
T ss_pred HHHHhcccccCCCEEEccHHHhhhh
Confidence 2221111112479999999999874
No 304
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.69 E-value=4.2e-17 Score=173.79 Aligned_cols=152 Identities=17% Similarity=0.143 Sum_probs=96.7
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCcee--------------eeEE-----EEEEEcCeEEEEEecCCCc
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTR--------------DSVR-----VHFEYQGRTVYLVDTAGWL 383 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~--------------~~~~-----~~~~~~~~~~~liDTpG~~ 383 (607)
..++|+++|++|+|||||+|+|++........++.++. +... .........+.||||||+.
T Consensus 7 ~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~ 86 (403)
T 3sjy_A 7 PEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHE 86 (403)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcH
Confidence 45899999999999999999999753211111111110 0000 0001122688999999965
Q ss_pred ccccccCcchhHHHHHHHHHhhccEEEEEeccchh-----------hHHh-cCCcEEEEEeCccCCCCcCchHHHHHHHH
Q 007334 384 QREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV-----------RAVE-EGRGLVVIVNKMDLLSGRQNSALYKRVKE 451 (607)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~-----------~~~~-~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~ 451 (607)
++. ..+..++..+|++|+|+|++++ .... ..+|+|+|+||+|+.+.......++.+
T Consensus 87 ~~~----------~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i-- 154 (403)
T 3sjy_A 87 VLM----------ATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQI-- 154 (403)
T ss_dssp GGH----------HHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHH--
T ss_pred HHH----------HHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHH--
Confidence 431 3345677889999999999875 1111 235999999999998653222222222
Q ss_pred hcHHHHHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHH
Q 007334 452 AVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
.+.+.. ....+++++++||++|.|+++|++.|.+.
T Consensus 155 --~~~l~~--~~~~~~~ii~vSA~~g~gi~~L~~~l~~~ 189 (403)
T 3sjy_A 155 --KQFTKG--TWAENVPIIPVSALHKINIDSLIEGIEEY 189 (403)
T ss_dssp --HHHHTT--STTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred --HHHHHh--hCCCCCEEEEEECCCCcChHHHHHHHHHh
Confidence 111111 11236799999999999999999888764
No 305
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.69 E-value=8.2e-17 Score=153.35 Aligned_cols=157 Identities=22% Similarity=0.231 Sum_probs=110.9
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCee--EEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLR--FKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+|+|.+|||||||+|+|++....... .+. ++.+...+.+.+++.. +.+|||+|+.... ..+
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~-~~t--~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~----------~~~ 95 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLES-KST--IGVEFATRSIQVDGKTIKAQIWDTAGLERYR----------AIT 95 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCCSC-CCC--CSEEEEEEEEEETTEEEEEEEEEECSCCSSS----------CCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCC-CCc--cceEEEEEEEEECCEEEEEEEEECCCCcchh----------hhh
Confidence 468999999999999999999987653322 222 5556666777777754 5679999987322 223
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..++..++++++|+|.++..+..+. .+...+.+. ..+.|+++|+||+|+..............+...++ .++.+||+
T Consensus 96 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~-~~ld~Sal 174 (191)
T 1oix_A 96 SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGL-SFIETSAL 174 (191)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEEECCTT
T ss_pred HHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCC-EEEEEeCC
Confidence 4456789999999999875544432 123333332 24689999999999986544444444455555565 67889999
Q ss_pred CCCChHHHHHHhccc
Q 007334 276 TGLGMTELYEALRPS 290 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~ 290 (607)
++.|++++++.|.+.
T Consensus 175 d~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 175 DSTNVEAAFQTILTE 189 (191)
T ss_dssp TCTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999988754
No 306
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.69 E-value=5.7e-17 Score=172.36 Aligned_cols=153 Identities=19% Similarity=0.181 Sum_probs=101.9
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCc------e---------eecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccc
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDR------V---------LVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKE 388 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~------~---------~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~ 388 (607)
.++|+++|++|+|||||+++|++... . ......|+|.+.....+...+..+.||||||+.++
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f--- 79 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADY--- 79 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHH---
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHH---
Confidence 47999999999999999999997310 0 01125678888766666667889999999996443
Q ss_pred cCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCc-EEEEEeCccCCCCcCchHHHHHHHHhcHHHH
Q 007334 389 KGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRG-LVVIVNKMDLLSGRQNSALYKRVKEAVPQEI 457 (607)
Q Consensus 389 ~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p-~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 457 (607)
. ..+..++..+|++|+|+|++++ .....++| +|+|+||+|+.+.. +.++.+.+.+.+.+
T Consensus 80 ------~-~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~---~~~~~~~~~~~~~l 149 (397)
T 1d2e_A 80 ------V-KNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDS---EMVELVELEIRELL 149 (397)
T ss_dssp ------H-HHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCH---HHHHHHHHHHHHHH
T ss_pred ------H-HHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCH---HHHHHHHHHHHHHH
Confidence 1 2344567789999999999885 12235788 78999999997531 12222222222222
Q ss_pred HhhCCCCCCCCEEEcccCCCCC----------HHHHHHHHHH
Q 007334 458 QTVIPQVTGIPVVFTSALEGRG----------RIAVMHQVID 489 (607)
Q Consensus 458 ~~~~~~~~~~~~v~iSA~~g~g----------v~~l~~~i~~ 489 (607)
...-.....+|++++||++|.| +.+|++.+.+
T Consensus 150 ~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~ 191 (397)
T 1d2e_A 150 TEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDT 191 (397)
T ss_dssp HHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHH
T ss_pred HHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHH
Confidence 2111111247999999999875 5556555543
No 307
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.69 E-value=1.4e-16 Score=167.16 Aligned_cols=139 Identities=13% Similarity=0.158 Sum_probs=103.7
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhh
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMR 405 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ 405 (607)
+|+++|++|+|||||+++|+ ..|+|.+.....+++++..+.||||||+.++. ..+..++..
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~---------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~----------~~~~~~~~~ 83 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG---------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTL----------KSLITALNI 83 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS---------EEEEESSSEEEEECSSSSEEEEEECTTTTTCH----------HHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHH---------hCCEEEEeeEEEEecCCeEEEEEECCChHHHH----------HHHHHHHHH
Confidence 89999999999999999998 44677777777777888899999999976541 234456788
Q ss_pred ccEEEEEeccchh----------hHHhcCCcE-EEEEe-CccCCCCcCchHHHHHHHHhcHHHHHhhCCCC--CCCCEEE
Q 007334 406 AHVVALVLDAEEV----------RAVEEGRGL-VVIVN-KMDLLSGRQNSALYKRVKEAVPQEIQTVIPQV--TGIPVVF 471 (607)
Q Consensus 406 ad~~llViD~~~~----------~~~~~~~p~-ivv~N-K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~ 471 (607)
+|++|+|+| +.+ .....++|. |+++| |+|+ +.. ..+.. .+++.+.+... ..+|+++
T Consensus 84 aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~----~~~~~----~~~i~~~l~~~~~~~~~ii~ 153 (370)
T 2elf_A 84 SDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HMH----AIDEL----KAKLKVITSGTVLQDWECIS 153 (370)
T ss_dssp CSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHH----HHHHH----HHHHHHHTTTSTTTTCEEEE
T ss_pred CCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHH----HHHHH----HHHHHHHHHhcCCCceEEEe
Confidence 999999999 654 122357888 99999 9999 431 11111 12333333322 3579999
Q ss_pred --cccCC---CCCHHHHHHHHHHHHHH
Q 007334 472 --TSALE---GRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 472 --iSA~~---g~gv~~l~~~i~~~~~~ 493 (607)
+||++ |.|++++++.|.+.+..
T Consensus 154 ~~~SA~~~~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 154 LNTNKSAKNPFEGVDELKARINEVAEK 180 (370)
T ss_dssp CCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred cccccccCcCCCCHHHHHHHHHhhccc
Confidence 99999 99999999998877643
No 308
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.69 E-value=1.4e-16 Score=153.59 Aligned_cols=166 Identities=22% Similarity=0.271 Sum_probs=103.7
Q ss_pred CCEEEEecCCCCchhHHHHHhhccc-eeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRR-EALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~-~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
..+|+|+|.+|||||||+|+|++.. ...+...+| +|.... .+.+.+ .+.+|||||+............+.....
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G--~~~~~~--~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 100 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPG--RTQLIN--LFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALG 100 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC---------------CCEE--EEEEET-TEEEEECCCCC------CCHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCccccccCCCc--cceeeE--EEEecC-CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence 4689999999999999999999876 333444555 555432 233334 7899999998632111111112222223
Q ss_pred HHh---hccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCc--HHHHHHHHHhcCC-CCcEEe
Q 007334 199 NVL---AKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGS--LAGAAAESLMLGF-GDPIAI 272 (607)
Q Consensus 199 ~~~---~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~--~~~~~~~~~~~~~-~~~i~i 272 (607)
.++ ..+|.+++|+|++.+.+..+.++..|+... +.|+++|+||+|+....... .......+...+. ...+++
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~--~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDS--NIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETF 178 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT--TCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEEC
T ss_pred HHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHc--CCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEE
Confidence 333 578999999999998887766677787765 78999999999987642111 1112222223321 245899
Q ss_pred ecCCCCChHHHHHHhccchH
Q 007334 273 SAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 273 SA~~g~gi~eL~~~i~~~l~ 292 (607)
||+++.|++++++.|.+.+.
T Consensus 179 Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 179 SSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp BTTTTBSHHHHHHHHHHHHC
T ss_pred eecCCCCHHHHHHHHHHHHh
Confidence 99999999999999877653
No 309
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.69 E-value=6.7e-18 Score=187.70 Aligned_cols=147 Identities=24% Similarity=0.285 Sum_probs=76.9
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceee------------------------------cCCCCceeeeEEEEEEEcCe
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLV------------------------------GPEAGLTRDSVRVHFEYQGR 372 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~------------------------------~~~~gtT~~~~~~~~~~~~~ 372 (607)
..++|+++|++|+|||||+|+|++....+. ...+|+|++.....+.+++.
T Consensus 176 ~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~ 255 (592)
T 3mca_A 176 PVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKK 255 (592)
T ss_dssp CEEEEEEECCSSSTHHHHHHHHHHHHHCC---------------------------------------------------
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCe
Confidence 457899999999999999999975322221 12568999998888888899
Q ss_pred EEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh-----------------hHHhcCCc-EEEEEeCc
Q 007334 373 TVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV-----------------RAVEEGRG-LVVIVNKM 434 (607)
Q Consensus 373 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~-----------------~~~~~~~p-~ivv~NK~ 434 (607)
.+.||||||+.++.... ..++..||++|||+|++++ .....++| +|+|+||+
T Consensus 256 ~i~iiDTPGh~~f~~~~----------~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKi 325 (592)
T 3mca_A 256 IYEIGDAPGHRDFISGM----------IAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKL 325 (592)
T ss_dssp ---CCEEESSSEEEEEC----------CC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECG
T ss_pred EEEEEECCChHHHHHHH----------HHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEecc
Confidence 99999999998763211 2345679999999999852 22345776 99999999
Q ss_pred cCCCCcCchHHHHHHHHhcHHHHHhhCCC-CCCCCEEEcccCCCCCHH
Q 007334 435 DLLSGRQNSALYKRVKEAVPQEIQTVIPQ-VTGIPVVFTSALEGRGRI 481 (607)
Q Consensus 435 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~iSA~~g~gv~ 481 (607)
|+.+.. ...++.+...+...+...+.. ...++++++||++|.|+.
T Consensus 326 Dl~~~~--~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 326 DLMSWS--EDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp GGGTTC--HHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred cccccc--HHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 997631 122233332222221011111 123589999999999997
No 310
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.69 E-value=1.4e-16 Score=171.37 Aligned_cols=149 Identities=25% Similarity=0.289 Sum_probs=98.5
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeec----------CC----------------------CCceeeeEEEEEEEcC
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVG----------PE----------------------AGLTRDSVRVHFEYQG 371 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~----------~~----------------------~gtT~~~~~~~~~~~~ 371 (607)
.++|+++|++|+|||||+|+|++....... .. .|+|.+.....+..++
T Consensus 24 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~ 103 (434)
T 1zun_B 24 MLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAK 103 (434)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSS
T ss_pred ceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecCC
Confidence 479999999999999999999876422111 11 3556666566677788
Q ss_pred eEEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCC-cEEEEEeCccCCCCc
Q 007334 372 RTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGR-GLVVIVNKMDLLSGR 440 (607)
Q Consensus 372 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~-p~ivv~NK~Dl~~~~ 440 (607)
..+.||||||+.++. .....++..+|++|+|+|++++ .....+. |+|+|+||+|+.+..
T Consensus 104 ~~~~iiDtpGh~~f~----------~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~ 173 (434)
T 1zun_B 104 RKFIIADTPGHEQYT----------RNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFD 173 (434)
T ss_dssp EEEEEEECCCSGGGH----------HHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSC
T ss_pred ceEEEEECCChHHHH----------HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCccc
Confidence 899999999975441 2234567899999999999875 1123355 599999999998632
Q ss_pred CchHHHHHHHHhcHHHHHhhCC-CCCCCCEEEcccCCCCCHHHHHH
Q 007334 441 QNSALYKRVKEAVPQEIQTVIP-QVTGIPVVFTSALEGRGRIAVMH 485 (607)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~iSA~~g~gv~~l~~ 485 (607)
.+.++.+.+.+..-+. .+. .....+++++||++|.|++++++
T Consensus 174 --~~~~~~i~~~~~~~~~-~~g~~~~~~~~i~vSA~~g~gi~~~~~ 216 (434)
T 1zun_B 174 --ERVFESIKADYLKFAE-GIAFKPTTMAFVPMSALKGDNVVNKSE 216 (434)
T ss_dssp --HHHHHHHHHHHHHHHH-TTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred --HHHHHHHHHHHHHHHH-HhCCCccCceEEEEeccCCCCcccccc
Confidence 1222222222221111 111 01236899999999999987654
No 311
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.68 E-value=4.6e-17 Score=180.37 Aligned_cols=160 Identities=25% Similarity=0.303 Sum_probs=109.6
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee------------------CCeeEEEecCCCCc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL------------------GDLRFKVLDSAGLE 181 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~------------------~~~~~~liDTpG~~ 181 (607)
.|+|+|+|++|+|||||+|+|++.... ...++ .+|.+.......+ ....+.||||||+.
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~--~~e~g-giT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe 81 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIRGSAVA--SREAG-GITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE 81 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHS--CC-----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccCc--cccCC-ceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcH
Confidence 579999999999999999999986532 11221 1343322222221 11259999999998
Q ss_pred cccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCc--------
Q 007334 182 TEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGS-------- 253 (607)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~-------- 253 (607)
... .....++..+|++|+|+|++++...+..+...+++.. +.|+++|+||+|+.......
T Consensus 82 ~F~----------~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~--~vPiIVViNKiDl~~~~~~~~~~~~~e~ 149 (594)
T 1g7s_A 82 AFT----------TLRKRGGALADLAILIVDINEGFKPQTQEALNILRMY--RTPFVVAANKIDRIHGWRVHEGRPFMET 149 (594)
T ss_dssp CCT----------TSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHT--TCCEEEEEECGGGSTTCCCCTTCCHHHH
T ss_pred HHH----------HHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHc--CCeEEEEecccccccccccccCCchHHH
Confidence 432 2222456789999999999999988888777777765 78999999999997532110
Q ss_pred -----------HH----HHHHHHHhcCC--------------CCcEEeecCCCCChHHHHHHhccchHHH
Q 007334 254 -----------LA----GAAAESLMLGF--------------GDPIAISAETGLGMTELYEALRPSVEDY 294 (607)
Q Consensus 254 -----------~~----~~~~~~~~~~~--------------~~~i~iSA~~g~gi~eL~~~i~~~l~~~ 294 (607)
.. +....+...++ .+++++||++|.|+++|+++|...++..
T Consensus 150 sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~ 219 (594)
T 1g7s_A 150 FSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQY 219 (594)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcccc
Confidence 00 11112222232 1579999999999999999998877653
No 312
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.68 E-value=1.2e-17 Score=170.91 Aligned_cols=193 Identities=20% Similarity=0.168 Sum_probs=115.4
Q ss_pred HHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecC
Q 007334 135 ALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVR 214 (607)
Q Consensus 135 SL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s 214 (607)
+|+++++...+......| |.-+.....+..+ .++.+||| ++. +...+..+++++|++|+|+|++
T Consensus 32 sl~~~~~~~~f~~~~~~p---TiGd~~~~~~~~~-~~~~iwD~--qer----------~~~l~~~~~~~ad~vilV~D~~ 95 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKI---YVGDRVEYTPDET-GSGVIENV--LHR----------KNLLTKPHVANVDQVILVVTVK 95 (301)
T ss_dssp CEEEEEECGGGTTTTCCC---CTTCEEEEECCCS-SSEEEEEE--CCC----------SCEETTTTEESCCEEEEEECSS
T ss_pred cEEEEEEcccccccCCCC---CCccEEEEEEcCC-CeEEEEEE--ccc----------cceeeccccccCCEEEEEEeCC
Confidence 677777765542001111 1113322222223 37999999 552 2223335789999999999999
Q ss_pred CCC-CHhHHHHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCC-CCcEEeecCCCCChHHHHHHhccch
Q 007334 215 SGL-HPLDLEVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGF-GDPIAISAETGLGMTELYEALRPSV 291 (607)
Q Consensus 215 ~~~-~~~~~~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~-~~~i~iSA~~g~gi~eL~~~i~~~l 291 (607)
++. +... +..|+... ..++|+++|+||+|+...... ++....+...+. .+++++||++|.|++++++.+..
T Consensus 96 ~~~~s~~~--l~~~l~~~~~~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g-- 169 (301)
T 1u0l_A 96 MPETSTYI--IDKFLVLAEKNELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG-- 169 (301)
T ss_dssp TTCCCHHH--HHHHHHHHHHTTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS--
T ss_pred CCCCCHHH--HHHHHHHHHHCCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC--
Confidence 876 4432 33444322 137899999999999764221 111222222220 37899999999999999987542
Q ss_pred HHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhcCCceeecCCCC-------ceeeeEE
Q 007334 292 EDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAG-------LTRDSVR 364 (607)
Q Consensus 292 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~g-------tT~~~~~ 364 (607)
-.++++|++|||||||+|.|.|......+.... +|....
T Consensus 170 ---------------------------------eiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~- 215 (301)
T 1u0l_A 170 ---------------------------------KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQ- 215 (301)
T ss_dssp ---------------------------------SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCC-
T ss_pred ---------------------------------CeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeE-
Confidence 147999999999999999999875443333322 333221
Q ss_pred EEEEEcCeEEEEEecCCCccc
Q 007334 365 VHFEYQGRTVYLVDTAGWLQR 385 (607)
Q Consensus 365 ~~~~~~~~~~~liDTpG~~~~ 385 (607)
.+... ..-.++||||+...
T Consensus 216 -~~~~~-~~g~v~q~p~~~~~ 234 (301)
T 1u0l_A 216 -LLKFD-FGGYVVDTPGFANL 234 (301)
T ss_dssp -EEECT-TSCEEESSCSSTTC
T ss_pred -EEEcC-CCCEEEECcCCCcc
Confidence 11111 12368999997544
No 313
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.68 E-value=2.8e-18 Score=187.11 Aligned_cols=153 Identities=22% Similarity=0.283 Sum_probs=107.9
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEE-cCeEEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEY-QGRTVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
++++|+++|++|+|||||+|+|++.. ......+|+|.+.....+.+ ++..+.||||||+.++.... ..
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~-~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~----------~~ 71 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQ-VAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMR----------AR 71 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHH-HHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSB----------BS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-cccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHH----------HH
Confidence 35789999999999999999999764 34457788898876665555 56789999999987663211 13
Q ss_pred HHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCC-CCCCCEE
Q 007334 402 NLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQ-VTGIPVV 470 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v 470 (607)
++..+|++|+|+|++++ .....++|+|+|+||+|+.+..... ....+. ........ ...++++
T Consensus 72 ~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~-v~~~l~-----~~~~~~e~~~~~~~iv 145 (537)
T 3izy_P 72 GTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEK-VKKELL-----AYDVVCEDYGGDVQAV 145 (537)
T ss_dssp SSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCS-SSSHHH-----HTTSCCCCSSSSEEEC
T ss_pred HHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHH-HHHHHH-----hhhhhHHhcCCCceEE
Confidence 45679999999999985 2334689999999999997542210 000000 00001111 1246899
Q ss_pred EcccCCCCCHHHHHHHHHHHHH
Q 007334 471 FTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 471 ~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
++||++|.|++++++.+....+
T Consensus 146 ~vSAktG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 146 HVSALTGENMMALAEATIALAE 167 (537)
T ss_dssp CCCSSSSCSSHHHHHHHHHHHT
T ss_pred EEECCCCCCchhHHHHHHHhhh
Confidence 9999999999999998876543
No 314
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.68 E-value=1.7e-18 Score=187.30 Aligned_cols=155 Identities=21% Similarity=0.301 Sum_probs=112.0
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
.|+|+++|++|+|||||+++|++.... ....++ +|.+.....+.+++..+.+|||||+.... .....
T Consensus 4 ~~~V~IvGhvd~GKTTLl~~L~~~~v~-~~e~~G--IT~~i~~~~v~~~~~~i~~iDTPGhe~f~----------~~~~~ 70 (501)
T 1zo1_I 4 APVVTIMGHVDHGKTSLLEYIRSTKVA-SGEAGG--ITQHIGAYHVETENGMITFLDTPGHAAFT----------SMRAR 70 (501)
T ss_dssp CCCEEEEESTTSSSHHHHHHHHHHHHS-BTTBCC--CCCCSSCCCCCTTSSCCCEECCCTTTCCT----------TSBCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCc-cccCCC--eeEeEEEEEEEECCEEEEEEECCCcHHHH----------HHHHH
Confidence 578999999999999999999976542 233344 67766655666778899999999998432 22234
Q ss_pred HhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHH----HHhcC-CCCcEEeec
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAE----SLMLG-FGDPIAISA 274 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~----~~~~~-~~~~i~iSA 274 (607)
.+..+|++++|+|++++..++..+.+..+... +.|+|+|+||+|+.............. ....+ ..+++++||
T Consensus 71 ~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~--~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSA 148 (501)
T 1zo1_I 71 GAQATDIVVLVVAADDGVMPQTIEAIQHAKAA--QVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSA 148 (501)
T ss_dssp SSBSCSSEEEEEETTTBSCTTTHHHHHHHHHT--TCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCT
T ss_pred HHhhCCEEEEEeecccCccHHHHHHHHHHHhc--CceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEee
Confidence 56789999999999998888877766666665 789999999999975321110000000 00111 126799999
Q ss_pred CCCCChHHHHHHhcc
Q 007334 275 ETGLGMTELYEALRP 289 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~ 289 (607)
++|.|+++|++.|..
T Consensus 149 ktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 149 KAGTGIDELLDAILL 163 (501)
T ss_dssp TTCTTCTTHHHHTTT
T ss_pred eeccCcchhhhhhhh
Confidence 999999999999874
No 315
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.68 E-value=2e-16 Score=151.55 Aligned_cols=148 Identities=18% Similarity=0.251 Sum_probs=102.0
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.++|+++|++|||||||+++|++.... ....+.++.+...+.+.++|. .+.+|||||..+... . ...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~-~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~------~----~~~ 73 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFN-LESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRR------I----TSA 73 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCC-C---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTC------C----CHH
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhh------h----hHH
Confidence 479999999999999999999987532 233344555666677778886 456899999654321 0 123
Q ss_pred HHhhccEEEEEeccchh-------hH---H----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEV-------RA---V----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~-------~~---~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
++..+|++++|+|+++. .. . ..+.|+++|+||+|+.+...... +.. + .+.. ..++
T Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~--~~a-~----~l~~----~~~~ 142 (199)
T 2f9l_A 74 YYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPT--DEA-R----AFAE----KNNL 142 (199)
T ss_dssp HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCH--HHH-H----HHHH----HTTC
T ss_pred HHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCH--HHH-H----HHHH----HcCC
Confidence 55679999999999864 00 1 13689999999999975422111 111 1 1111 1256
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
+++++||+++.|++++++.+.+.+.+
T Consensus 143 ~~~d~Sal~~~~i~~l~~~l~~~~~~ 168 (199)
T 2f9l_A 143 SFIETSALDSTNVEEAFKNILTEIYR 168 (199)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 89999999999999999999877643
No 316
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.68 E-value=1.2e-16 Score=170.60 Aligned_cols=150 Identities=21% Similarity=0.234 Sum_probs=101.2
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCc--eeecCCCCceeeeEEEEEEEc-----------------------CeEEEEE
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDR--VLVGPEAGLTRDSVRVHFEYQ-----------------------GRTVYLV 377 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~--~~~~~~~gtT~~~~~~~~~~~-----------------------~~~~~li 377 (607)
..++|+++|++|+|||||+++|+|... ......+|+|.+.....+.+. ...+.||
T Consensus 9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 88 (410)
T 1kk1_A 9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI 88 (410)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEE
Confidence 347999999999999999999997532 223345778877554433331 1678999
Q ss_pred ecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh-----------hHHhcC-CcEEEEEeCccCCCCcCchHH
Q 007334 378 DTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV-----------RAVEEG-RGLVVIVNKMDLLSGRQNSAL 445 (607)
Q Consensus 378 DTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~-----------~~~~~~-~p~ivv~NK~Dl~~~~~~~~~ 445 (607)
||||+.++ . ..+...+..+|++|+|+|++++ .....+ .|+|+|+||+|+.+.....+.
T Consensus 89 DtPGh~~f---------~-~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~~~~~ 158 (410)
T 1kk1_A 89 DAPGHEAL---------M-TTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALEN 158 (410)
T ss_dssp ECSSHHHH---------H-HHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHH
T ss_pred ECCChHHH---------H-HHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHHHHHH
Confidence 99996433 1 2234556678999999999853 111123 589999999999864221112
Q ss_pred HHHHHHhcHHHHHhhCCC--CCCCCEEEcccCCCCCHHHHHHHHHHH
Q 007334 446 YKRVKEAVPQEIQTVIPQ--VTGIPVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~--~~~~~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
++.+ .+.+.. ...++++++||++|.|+++|++.|.+.
T Consensus 159 ~~~i--------~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~ 197 (410)
T 1kk1_A 159 YRQI--------KEFIEGTVAENAPIIPISALHGANIDVLVKAIEDF 197 (410)
T ss_dssp HHHH--------HHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHH--------HHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHh
Confidence 2222 222221 246799999999999999998877653
No 317
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.68 E-value=2.4e-16 Score=174.46 Aligned_cols=147 Identities=26% Similarity=0.379 Sum_probs=95.2
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCcee--------------ecCCCCceeeeEEEEEEEcC-----eEEEEEecCCCccc
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVL--------------VGPEAGLTRDSVRVHFEYQG-----RTVYLVDTAGWLQR 385 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~--------------~~~~~gtT~~~~~~~~~~~~-----~~~~liDTpG~~~~ 385 (607)
.+|+|+|++|+|||||+++|+...... .....|+|.......+.|.+ ..+.||||||+.++
T Consensus 5 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF 84 (599)
T 3cb4_D 5 RNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDF 84 (599)
T ss_dssp EEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchHH
Confidence 589999999999999999998632111 11235777776666666642 57889999998655
Q ss_pred ccccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHH
Q 007334 386 EKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQ 455 (607)
Q Consensus 386 ~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~ 455 (607)
. ....+++..+|++|+|+|++++ .....++|+|+|+||+|+.... . +... .
T Consensus 85 ~----------~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~-~----~~v~----~ 145 (599)
T 3cb4_D 85 S----------YEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAAD-P----ERVA----E 145 (599)
T ss_dssp H----------HHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCC-H----HHHH----H
T ss_pred H----------HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCccccc-H----HHHH----H
Confidence 2 2345678889999999999875 2345689999999999998653 1 1111 2
Q ss_pred HHHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 456 EIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 456 ~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
++.+.+. ....+++++||++|.|++++++.+.+.+
T Consensus 146 ei~~~lg-~~~~~vi~vSAktg~GI~~Ll~~I~~~l 180 (599)
T 3cb4_D 146 EIEDIVG-IDATDAVRCSAKTGVGVQDVLERLVRDI 180 (599)
T ss_dssp HHHHHTC-CCCTTCEEECTTTCTTHHHHHHHHHHHS
T ss_pred HHHHHhC-CCcceEEEeecccCCCchhHHHHHhhcC
Confidence 2333321 2223689999999999999998887643
No 318
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.67 E-value=3.7e-17 Score=166.59 Aligned_cols=159 Identities=13% Similarity=0.116 Sum_probs=101.4
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHh
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVL 201 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 201 (607)
+|+++|.+|||||||++++.+..........+ .|.......+. ...++.||||||++....+ . + .+..++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~--~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~-~----l--~~~~yy 70 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLE--STSNPSLEHFS-TLIDLAVMELPGQLNYFEP-S----Y--DSERLF 70 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCC--CCCSCCCEEEC-SSSCEEEEECCSCSSSCCC-S----H--HHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceec--CeeeeeeEEEc-cEEEEEEEECCCchhccch-h----h--hhhhhc
Confidence 58999999999999999987653211111112 23333223332 3478999999999943210 0 0 346788
Q ss_pred hccCEEEEEEecCCCCCHhH-HHHHHHHHh---hCCCCcEEEEecCCCcccCCcC------cHHHHHHHHHh-----cCC
Q 007334 202 AKTQFAIFMIDVRSGLHPLD-LEVGKWLRK---HAPQIKPIVAMNKCESLHNGTG------SLAGAAAESLM-----LGF 266 (607)
Q Consensus 202 ~~ad~vl~VvD~s~~~~~~~-~~~~~~l~~---~~~~~p~ilV~NK~D~~~~~~~------~~~~~~~~~~~-----~~~ 266 (607)
+.++++|+|+|+++. .... .++.+|+.. ..++.|+++|+||+|+...... ...+...++.. .++
T Consensus 71 r~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i 149 (331)
T 3r7w_B 71 KSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQV 149 (331)
T ss_dssp TTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCE
T ss_pred cCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCc
Confidence 999999999999987 3332 334455543 3568999999999999764210 00111111122 223
Q ss_pred CCcEEeecCCCCChHHHHHHhccchHH
Q 007334 267 GDPIAISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 267 ~~~i~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
.++++||++ .++.+.|..|...+.+
T Consensus 150 -~f~eTSAkd-~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 150 -SFYLTSIFD-HSIYEAFSRIVQKLIP 174 (331)
T ss_dssp -EEECCCSSS-SHHHHHHHHHHTTSST
T ss_pred -eEEEeccCC-CcHHHHHHHHHHHHHh
Confidence 568999998 5899999998876644
No 319
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.67 E-value=1.3e-17 Score=176.48 Aligned_cols=89 Identities=25% Similarity=0.329 Sum_probs=49.8
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee---------------------C---CeeEEEecC
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL---------------------G---DLRFKVLDS 177 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~---------------------~---~~~~~liDT 177 (607)
+|+|||.||||||||+|+|++.. +.+++.|+ +|++...+...+ . ..++.+|||
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~--tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDt 78 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD-VEIANYPF--TTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV 78 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-CcccCCCC--cccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEEC
Confidence 79999999999999999999987 66778887 888777665321 2 257999999
Q ss_pred CCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCC
Q 007334 178 AGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSG 216 (607)
Q Consensus 178 pG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~ 216 (607)
||+........ ......+.+++.+|++++|+|++++
T Consensus 79 pG~~~~a~~~~---~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 79 AGLVPGAHEGR---GLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp C------------------CCCSSTTCSEEEEEEETTCC
T ss_pred CCcccchhhhh---hHHHHHHHHHhcCCEEEEEEecccc
Confidence 99974221110 1112223567899999999999875
No 320
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.67 E-value=1.3e-16 Score=171.68 Aligned_cols=151 Identities=19% Similarity=0.202 Sum_probs=102.0
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeee------------------------cc------CCCCceeeeeEEEEeeeCC
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALV------------------------YN------TPDDHVTRDIREGLAKLGD 169 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v------------------------~~------~~~~~~T~~~~~~~~~~~~ 169 (607)
..+|+++|++|+|||||+|+|++....+. .+ ..+ +|.+.....+...+
T Consensus 6 ~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~g--iTi~~~~~~~~~~~ 83 (435)
T 1jny_A 6 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERG--VTINLTFMRFETKK 83 (435)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-------------CEEECSS
T ss_pred EEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcC--ceeEeeEEEEecCC
Confidence 46899999999999999999986521111 01 234 77777777777788
Q ss_pred eeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCC-------CCHhHHHHHHHHHhhCCCC-cEEEEe
Q 007334 170 LRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSG-------LHPLDLEVGKWLRKHAPQI-KPIVAM 241 (607)
Q Consensus 170 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~-------~~~~~~~~~~~l~~~~~~~-p~ilV~ 241 (607)
..+.+|||||+. ++...+..++..+|++|+|+|++++ ...+..+....+... +. |+|+|+
T Consensus 84 ~~~~iiDtpG~~----------~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~--~~~~iivvi 151 (435)
T 1jny_A 84 YFFTIIDAPGHR----------DFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTM--GLDQLIVAV 151 (435)
T ss_dssp CEEEECCCSSST----------THHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHT--TCTTCEEEE
T ss_pred eEEEEEECCCcH----------HHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHc--CCCeEEEEE
Confidence 999999999998 5556677889999999999999986 444445555555554 44 689999
Q ss_pred cCCCcccCC--cCc----HHHHHHHHHhcCC----CCcEEeecCCCCChHHHH
Q 007334 242 NKCESLHNG--TGS----LAGAAAESLMLGF----GDPIAISAETGLGMTELY 284 (607)
Q Consensus 242 NK~D~~~~~--~~~----~~~~~~~~~~~~~----~~~i~iSA~~g~gi~eL~ 284 (607)
||+|+.... ... ..+....+...++ .+++++||++|.|+.+++
T Consensus 152 NK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~ 204 (435)
T 1jny_A 152 NKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKS 204 (435)
T ss_dssp ECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCC
T ss_pred EcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccc
Confidence 999998631 111 1222333444554 257999999999998654
No 321
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.67 E-value=2e-16 Score=168.76 Aligned_cols=151 Identities=21% Similarity=0.225 Sum_probs=91.7
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCc--eeecCCCCceeeeEEEEEEE---------------c--------CeEEEEEe
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDR--VLVGPEAGLTRDSVRVHFEY---------------Q--------GRTVYLVD 378 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~--~~~~~~~gtT~~~~~~~~~~---------------~--------~~~~~liD 378 (607)
.++|+++|++|+|||||+++|+|... ......+|+|.+.......+ + ...+.|||
T Consensus 8 ~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiD 87 (408)
T 1s0u_A 8 EVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVD 87 (408)
T ss_dssp CEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEEE
Confidence 58999999999999999999997532 22334467787654333222 1 16789999
Q ss_pred cCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh-----------hHHhcC-CcEEEEEeCccCCCCcCchHHH
Q 007334 379 TAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV-----------RAVEEG-RGLVVIVNKMDLLSGRQNSALY 446 (607)
Q Consensus 379 TpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~-----------~~~~~~-~p~ivv~NK~Dl~~~~~~~~~~ 446 (607)
|||+.++ . ..+...+..+|++|+|+|++++ .....+ .|+|+|+||+|+.+.......+
T Consensus 88 tPGh~~f---------~-~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~~~~~ 157 (408)
T 1s0u_A 88 SPGHETL---------M-ATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENY 157 (408)
T ss_dssp CSSHHHH---------H-HHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTTTTHH
T ss_pred CCCHHHH---------H-HHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHHHHHHH
Confidence 9996433 1 1223445567999999999853 111223 5899999999998754322233
Q ss_pred HHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHH
Q 007334 447 KRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
+.+.+. +... ...+++++++||++|.|+++|++.|.+.
T Consensus 158 ~~i~~~----l~~~--~~~~~~~i~vSA~~g~gi~~L~~~l~~~ 195 (408)
T 1s0u_A 158 EQIKEF----VKGT--IAENAPIIPISAHHEANIDVLLKAIQDF 195 (408)
T ss_dssp HHHHHH----HTTS--TTTTCCEEEC------CHHHHHHHHHHH
T ss_pred HHHHHH----Hhhc--CCCCCeEEEeeCCCCCCHHHHHHHHHHh
Confidence 332211 1111 1236799999999999999998887653
No 322
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.67 E-value=7.2e-17 Score=156.69 Aligned_cols=144 Identities=16% Similarity=0.095 Sum_probs=84.0
Q ss_pred cCCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 118 NLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 118 ~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
...++|+++|.+|||||||+|+|++............+++.+. .+..+.+|||||+.. +....
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~Dt~G~~~----------~~~~~ 72 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-------DGSGVTLVDFPGHVK----------LRYKL 72 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG-------GGSSCEEEECCCCGG----------GTHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe-------eCceEEEEECCCcHH----------HHHHH
Confidence 3468999999999999999999998764221111111122222 567899999999973 22233
Q ss_pred HHHhhc----cCEEEEEEecC-CCCCHhH--HHHHHHHHh----hCCCCcEEEEecCCCcccCCcCc------HHHHHHH
Q 007334 198 ANVLAK----TQFAIFMIDVR-SGLHPLD--LEVGKWLRK----HAPQIKPIVAMNKCESLHNGTGS------LAGAAAE 260 (607)
Q Consensus 198 ~~~~~~----ad~vl~VvD~s-~~~~~~~--~~~~~~l~~----~~~~~p~ilV~NK~D~~~~~~~~------~~~~~~~ 260 (607)
..++.. +|++++|+|++ ++.+..+ ..+.+.+.. ...+.|+++|+||+|+....... .......
T Consensus 73 ~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~ 152 (218)
T 1nrj_B 73 SDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKV 152 (218)
T ss_dssp HHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHH
Confidence 344444 89999999999 4444333 233333332 12478999999999998764422 1111112
Q ss_pred HHhcCCCCcEEeecCCCCC
Q 007334 261 SLMLGFGDPIAISAETGLG 279 (607)
Q Consensus 261 ~~~~~~~~~i~iSA~~g~g 279 (607)
....+. .++++||++|.+
T Consensus 153 ~~~~~~-~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 153 IERRKK-SLNEVERKINEE 170 (218)
T ss_dssp HHHHHH-HHHC--------
T ss_pred HHHHhc-cccccccccccc
Confidence 222233 568999998875
No 323
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.67 E-value=3.3e-17 Score=177.17 Aligned_cols=151 Identities=21% Similarity=0.184 Sum_probs=107.1
Q ss_pred CCEEEEecCCCCchhHHHHHhhcccee------------------------eecc------CCCCceeeeeEEEEeeeCC
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREA------------------------LVYN------TPDDHVTRDIREGLAKLGD 169 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~------------------------~v~~------~~~~~~T~~~~~~~~~~~~ 169 (607)
..+|+++|++|+|||||+|+|++.... .+.+ ..| +|.+..+..+...+
T Consensus 7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~G--iTi~~~~~~~~~~~ 84 (458)
T 1f60_A 7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERG--ITIDIALWKFETPK 84 (458)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTT--CCCSCSCEEEECSS
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcC--cEEEEEEEEEecCC
Confidence 368999999999999999999864210 0111 134 77777777777788
Q ss_pred eeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCH-------hHHHHHHHHHhhCCCCc-EEEEe
Q 007334 170 LRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHP-------LDLEVGKWLRKHAPQIK-PIVAM 241 (607)
Q Consensus 170 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~-------~~~~~~~~l~~~~~~~p-~ilV~ 241 (607)
..+.+|||||+. ++...+..++..+|++|+|+|++++..+ +..+....+... +.| +|+|+
T Consensus 85 ~~~~iiDtPGh~----------~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~--~v~~iivvi 152 (458)
T 1f60_A 85 YQVTVIDAPGHR----------DFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL--GVRQLIVAV 152 (458)
T ss_dssp EEEEEEECCCCT----------THHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT--TCCEEEEEE
T ss_pred ceEEEEECCCcH----------HHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHc--CCCeEEEEE
Confidence 999999999988 5666677889999999999999976533 444444444444 565 89999
Q ss_pred cCCCcccCCcCcH----HHHHHHHHhcCC----CCcEEeecCCCCChHHHH
Q 007334 242 NKCESLHNGTGSL----AGAAAESLMLGF----GDPIAISAETGLGMTELY 284 (607)
Q Consensus 242 NK~D~~~~~~~~~----~~~~~~~~~~~~----~~~i~iSA~~g~gi~eL~ 284 (607)
||+|+........ .+....+..+++ .+++++||++|.|+.++.
T Consensus 153 NK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~ 203 (458)
T 1f60_A 153 NKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEAT 203 (458)
T ss_dssp ECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCC
T ss_pred EccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccccc
Confidence 9999984211111 112223344554 368999999999997654
No 324
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.67 E-value=1e-16 Score=172.36 Aligned_cols=152 Identities=24% Similarity=0.276 Sum_probs=95.9
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCcee------------------------------ecCCCCceeeeEEEEEEEcCeE
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVL------------------------------VGPEAGLTRDSVRVHFEYQGRT 373 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~------------------------------~~~~~gtT~~~~~~~~~~~~~~ 373 (607)
.++|+++|++|+|||||+++|++..... .....|+|.+.....+.+.+..
T Consensus 6 ~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~~ 85 (435)
T 1jny_A 6 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYF 85 (435)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCE
T ss_pred EEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCeE
Confidence 4799999999999999999998641111 1114688888877778888899
Q ss_pred EEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh----------h-------HHhcCC-cEEEEEeCcc
Q 007334 374 VYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------R-------AVEEGR-GLVVIVNKMD 435 (607)
Q Consensus 374 ~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~-------~~~~~~-p~ivv~NK~D 435 (607)
+.||||||+.++. ..+..++..+|++|+|+|++++ + ....+. |+|+|+||+|
T Consensus 86 ~~iiDtpG~~~f~----------~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~D 155 (435)
T 1jny_A 86 FTIIDAPGHRDFV----------KNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMD 155 (435)
T ss_dssp EEECCCSSSTTHH----------HHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGG
T ss_pred EEEEECCCcHHHH----------HHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEccc
Confidence 9999999976542 2345677889999999999865 0 112354 6999999999
Q ss_pred CCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHHHH
Q 007334 436 LLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMH 485 (607)
Q Consensus 436 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~ 485 (607)
+.+.....+.++.+.+.+...+...-.....++++++||++|.|+.++++
T Consensus 156 l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 156 LTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp GSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred CCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 98632112223333333322222211111247899999999999976643
No 325
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.67 E-value=3.1e-17 Score=171.76 Aligned_cols=169 Identities=18% Similarity=0.192 Sum_probs=104.2
Q ss_pred CCCEEEEecCCCCchhHHHHHhhcccee-----eeccCCCC--------------------ceeee--------------
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREA-----LVYNTPDD--------------------HVTRD-------------- 159 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~-----~v~~~~~~--------------------~~T~~-------------- 159 (607)
..|+|+|||.+|||||||+|+|++.++. ++...|+. ++|++
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 4689999999999999999999998753 22222320 01111
Q ss_pred ---------eEEEEee-eCCeeEEEecCCCCccccC---chhHHHHHHHHHHHHhhccC-EEEEEEecCCCCCHhHH-HH
Q 007334 160 ---------IREGLAK-LGDLRFKVLDSAGLETEAT---SGSILDRTAGMTANVLAKTQ-FAIFMIDVRSGLHPLDL-EV 224 (607)
Q Consensus 160 ---------~~~~~~~-~~~~~~~liDTpG~~~~~~---~~~~~~~~~~~~~~~~~~ad-~vl~VvD~s~~~~~~~~-~~ 224 (607)
...-.+. ..+..+.||||||+..... .......+...+..++..++ ++++|+|++.+....+. .+
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i 189 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKV 189 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHH
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHH
Confidence 0000011 1246899999999974321 12222345566677776655 66667777765555543 24
Q ss_pred HHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHh--cCCCCcEEeecCCCCChHHHHHHhcc
Q 007334 225 GKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLM--LGFGDPIAISAETGLGMTELYEALRP 289 (607)
Q Consensus 225 ~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~--~~~~~~i~iSA~~g~gi~eL~~~i~~ 289 (607)
++.+... +.|+++|+||+|+................. .++..++++||++|.|+++|++.+.+
T Consensus 190 ~~~~~~~--~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 190 AKEVDPQ--GQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHCTT--CTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHhCcC--CCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 4444433 789999999999986543211111100011 23335688999999999999998875
No 326
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.67 E-value=2e-16 Score=174.72 Aligned_cols=148 Identities=27% Similarity=0.410 Sum_probs=97.7
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCcee--------------ecCCCCceeeeEEEEEEEc---C--eEEEEEecCCCcc
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVL--------------VGPEAGLTRDSVRVHFEYQ---G--RTVYLVDTAGWLQ 384 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~--------------~~~~~gtT~~~~~~~~~~~---~--~~~~liDTpG~~~ 384 (607)
..+|+++|++|+|||||+++|++..... .....|+|.......+.|. + ..+.||||||+.+
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d 85 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD 85 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence 3689999999999999999998632111 1113466665544555554 2 5778999999866
Q ss_pred cccccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcH
Q 007334 385 REKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVP 454 (607)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~ 454 (607)
+. ....+++..+|++|+|+|++++ .....++|+|+|+||+|+.... . +.. .
T Consensus 86 F~----------~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~-~----~~v----~ 146 (600)
T 2ywe_A 86 FS----------YEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSAD-V----DRV----K 146 (600)
T ss_dssp GH----------HHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCC-H----HHH----H
T ss_pred HH----------HHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccC-H----HHH----H
Confidence 52 2344677899999999999886 2345689999999999997652 1 111 1
Q ss_pred HHHHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 455 QEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 455 ~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
.++.+.+. ....+++++||++|.|++++++.+.+.+
T Consensus 147 ~el~~~lg-~~~~~vi~vSAktg~GI~~Lle~I~~~l 182 (600)
T 2ywe_A 147 KQIEEVLG-LDPEEAILASAKEGIGIEEILEAIVNRI 182 (600)
T ss_dssp HHHHHTSC-CCGGGCEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHHHHhhC-CCcccEEEEEeecCCCchHHHHHHHHhc
Confidence 22333321 1123589999999999999998887643
No 327
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.66 E-value=1.1e-16 Score=167.69 Aligned_cols=182 Identities=18% Similarity=0.194 Sum_probs=111.3
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCce-----eecCCCC----------------------ceee---------------
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRV-----LVGPEAG----------------------LTRD--------------- 361 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~-----~~~~~~g----------------------tT~~--------------- 361 (607)
.++|+++|.+|||||||+|+|+|.... .++..|+ +|++
T Consensus 31 ~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g 110 (353)
T 2x2e_A 31 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 110 (353)
T ss_dssp CCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhcc
Confidence 468999999999999999999987654 4444555 3332
Q ss_pred --------eEEEEEEE-cCeEEEEEecCCCcccccc---cCcchhHHHHHHHHHhhc-cEEEEEeccchh------h-H-
Q 007334 362 --------SVRVHFEY-QGRTVYLVDTAGWLQREKE---KGPASLSVMQSRKNLMRA-HVVALVLDAEEV------R-A- 420 (607)
Q Consensus 362 --------~~~~~~~~-~~~~~~liDTpG~~~~~~~---~~~~~~~~~~~~~~i~~a-d~~llViD~~~~------~-~- 420 (607)
.....+.. ++..+.||||||+.+.... ..........+..++..+ +++++|+|++.. . .
T Consensus 111 ~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~ 190 (353)
T 2x2e_A 111 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVA 190 (353)
T ss_dssp TTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHH
T ss_pred cCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHH
Confidence 11111112 2467999999998754211 111111123344566555 556666776542 1 1
Q ss_pred ---HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCC-CCCCCEEEcccCCCCCHHHHHHHHHHHH-----
Q 007334 421 ---VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQ-VTGIPVVFTSALEGRGRIAVMHQVIDTY----- 491 (607)
Q Consensus 421 ---~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~iSA~~g~gv~~l~~~i~~~~----- 491 (607)
...++|+++|+||+|+.+...... +.+ + .+.+.. ..+.+++++||++|.|++++++.+.+..
T Consensus 191 ~~~~~~~~~~i~V~NK~Dl~~~~~~~~--~~~-~------~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~e~~~f~~ 261 (353)
T 2x2e_A 191 KEVDPQGQRTIGVITKLDLMDEGTDAR--DVL-E------NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFFLS 261 (353)
T ss_dssp HHHCTTCTTEEEEEECGGGSCTTCCCH--HHH-T------TCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHhCcCCCceEEEeccccccCcchhHH--HHH-h------CCcccccCCceEEEeCCcccccccccHHHHHHHHHHHhcc
Confidence 124789999999999986532110 100 0 111111 1235788999999999999999887631
Q ss_pred ----HHHhcCCChHHHHHHHHHHHHhC
Q 007334 492 ----QKWCLRLPTSRLNRWLRKVMGRH 514 (607)
Q Consensus 492 ----~~~~~~~~~~~l~~~l~~~~~~~ 514 (607)
.....++.+..|+++|++.+..+
T Consensus 262 ~~~~~~~~~r~~~~~l~~~l~e~l~~~ 288 (353)
T 2x2e_A 262 HPSYRHLADRMGTPYLQKVLNQQLTNH 288 (353)
T ss_dssp CTTTGGGGGGCSHHHHHHHHHHHHHHH
T ss_pred CCcccccHHhhCHHHHHHHHHHHHHHH
Confidence 22345677788888887665543
No 328
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.66 E-value=8e-18 Score=182.05 Aligned_cols=149 Identities=23% Similarity=0.326 Sum_probs=105.6
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
++.+|+++|++|+|||||+++|++.. ......+|+|.+.....+.+++..+.||||||+.++.... .++
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~-v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~----------~~~ 71 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTK-VASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMR----------ARG 71 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHH-HSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSB----------CSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCC-CccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHH----------HHH
Confidence 45789999999999999999999753 4445567888876665666788899999999987663211 134
Q ss_pred HhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCC--CCCCEE
Q 007334 403 LMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQV--TGIPVV 470 (607)
Q Consensus 403 i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v 470 (607)
+..+|++|+|+|++++ .....++|+|+++||+|+....... +...+.. ...++.. ..++++
T Consensus 72 ~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~~-----v~~~l~~--~~~~~~~~~~~~~~v 144 (501)
T 1zo1_I 72 AQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDR-----VKNELSQ--YGILPEEWGGESQFV 144 (501)
T ss_dssp SBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCCC-----TTCCCCC--CCCCTTCCSSSCEEE
T ss_pred HhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCHHH-----HHHHHHH--hhhhHHHhCCCccEE
Confidence 5679999999999885 2234689999999999997532100 0000000 0011111 136899
Q ss_pred EcccCCCCCHHHHHHHHHH
Q 007334 471 FTSALEGRGRIAVMHQVID 489 (607)
Q Consensus 471 ~iSA~~g~gv~~l~~~i~~ 489 (607)
++||++|.|++++++.+..
T Consensus 145 ~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 145 HVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp ECCTTTCTTCTTHHHHTTT
T ss_pred EEeeeeccCcchhhhhhhh
Confidence 9999999999999988764
No 329
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.66 E-value=6.7e-16 Score=163.72 Aligned_cols=199 Identities=23% Similarity=0.288 Sum_probs=128.0
Q ss_pred cCccCCCCCCCCCCccccccccccccCCc-ccccccccCCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeee
Q 007334 82 EALEDTHVEPEPDGVVEDHKVKPLYEKPV-DFTKIDINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDI 160 (607)
Q Consensus 82 ~g~g~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~ 160 (607)
.|.|+..++...+.. . +....-..-. .--.+.......|+|||++|||||||+|+|++... .+.+.++ +|.+.
T Consensus 121 gG~Gn~~f~~~~~~~--p-~~~~~g~~g~~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~-~i~~~~f--tTl~p 194 (416)
T 1udx_A 121 GGRGNMHFVSPTRQA--P-RFAEAGEEGEKRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP-KIAPYPF--TTLSP 194 (416)
T ss_dssp CCCCGGGGCCSSCSS--C-CEEECCCCCCEEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC-EECCCTT--CSSCC
T ss_pred CCcccceeecccccC--c-ccccCCCCceEeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc-cccCccc--ceecc
Confidence 577888888887776 2 2222111111 00112223356899999999999999999998765 3556666 77777
Q ss_pred EEEEeeeCC-eeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHH-HHHHHHhhC---CCC
Q 007334 161 REGLAKLGD-LRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKHA---PQI 235 (607)
Q Consensus 161 ~~~~~~~~~-~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~~---~~~ 235 (607)
..+.+...+ ..+.++||||+.........+. ......+..++.+++|+|++ .....+.. +.+.+.... ...
T Consensus 195 ~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~---~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~ 270 (416)
T 1udx_A 195 NLGVVEVSEEERFTLADIPGIIEGASEGKGLG---LEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRR 270 (416)
T ss_dssp EEEEEECSSSCEEEEEECCCCCCCGGGSCCSC---HHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHS
T ss_pred eeeEEEecCcceEEEEeccccccchhhhhhhh---HHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcC
Confidence 777777765 7899999999974322110000 11133467899999999997 22222211 222222211 257
Q ss_pred cEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCChHHHHHHhccchHH
Q 007334 236 KPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 236 p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
|.++|+||+|+... .........+...+. .++++||++++|+++|++.|.+.+..
T Consensus 271 P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~-~vi~iSA~~g~gi~eL~~~i~~~l~~ 325 (416)
T 1udx_A 271 PSLVALNKVDLLEE--EAVKALADALAREGL-AVLPVSALTGAGLPALKEALHALVRS 325 (416)
T ss_dssp CEEEEEECCTTSCH--HHHHHHHHHHHTTTS-CEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred CEEEEEECCChhhH--HHHHHHHHHHHhcCC-eEEEEECCCccCHHHHHHHHHHHHHh
Confidence 99999999998763 112222233334454 78999999999999999999887753
No 330
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.66 E-value=2.9e-16 Score=160.01 Aligned_cols=152 Identities=15% Similarity=0.215 Sum_probs=101.0
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhh
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMR 405 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ 405 (607)
||+++|..|||||||++++.+..........+.|.......+. ...+++||||||+.++... . ..+..++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~----~---l~~~~yyr~ 72 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEP----S---YDSERLFKS 72 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCC----S---HHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccch----h---hhhhhhccC
Confidence 6899999999999999988754211111112222221111221 2368999999997665210 0 123467889
Q ss_pred ccEEEEEeccchh---------h------HHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCC----CC
Q 007334 406 AHVVALVLDAEEV---------R------AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQV----TG 466 (607)
Q Consensus 406 ad~~llViD~~~~---------~------~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 466 (607)
|+++|+|+|+++. . ....+.|+++++||+|+.....+. ...+.+..+.++.++.. .+
T Consensus 73 a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~----~~~R~V~~~~~~~la~~~~~~~~ 148 (331)
T 3r7w_B 73 VGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKV----DAQRDIMQRTGEELLELGLDGVQ 148 (331)
T ss_dssp CSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHH----HHHHHHHHHHHHTTSSSSCSCCC
T ss_pred CCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhh----hHHHHhhHHHHHHHHhhcccccC
Confidence 9999999999874 0 012478999999999998653211 12244555666666664 57
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
++++++||++ .||.++|..+++.
T Consensus 149 i~f~eTSAkd-~nV~eAFs~iv~~ 171 (331)
T 3r7w_B 149 VSFYLTSIFD-HSIYEAFSRIVQK 171 (331)
T ss_dssp EEEECCCSSS-SHHHHHHHHHHTT
T ss_pred ceEEEeccCC-CcHHHHHHHHHHH
Confidence 8999999998 5899999988764
No 331
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.65 E-value=2.5e-16 Score=181.54 Aligned_cols=159 Identities=17% Similarity=0.100 Sum_probs=113.3
Q ss_pred CCEEEEecCCCCchhHHHHHhhccce----e------ee-----ccCCCCceeeeeEEEEeeeCCeeEEEecCCCCcccc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRRE----A------LV-----YNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEA 184 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~----~------~v-----~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~ 184 (607)
..+|+++|++|+|||||+++|++... . .. ....| +|.+.....+...+..+.||||||+.
T Consensus 296 ~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerG--ITIdva~v~f~~~~~kI~IIDTPGHe--- 370 (1289)
T 3avx_A 296 HVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARG--ITINTSHVEYDTPTRHYAHVDCPGHA--- 370 (1289)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHHHHSCC-----------------------CCSCEEEECSSCEEEEEECCCHH---
T ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCc--eeEEEEEEEEcCCCEEEEEEECCChH---
Confidence 46899999999999999999997410 0 00 11233 56665555556677899999999998
Q ss_pred CchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCc-EEEEecCCCcccCCcC---cHHHHHHH
Q 007334 185 TSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIK-PIVAMNKCESLHNGTG---SLAGAAAE 260 (607)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p-~ilV~NK~D~~~~~~~---~~~~~~~~ 260 (607)
++...+...+..+|++|+|+|++++...+..+....+... ++| +|+|+||+|+...... ...+....
T Consensus 371 -------dF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~l--gIP~IIVVINKiDLv~d~e~le~i~eEi~el 441 (1289)
T 3avx_A 371 -------DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQV--GVPYIIVFLNKCDMVDDEELLELVEMEVREL 441 (1289)
T ss_dssp -------HHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHH--TCSCEEEEEECCTTCCCHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHc--CCCeEEEEEeecccccchhhHHHHHHHHHHH
Confidence 5667777889999999999999999888877766666665 678 7899999999853210 01122233
Q ss_pred HHhcCC----CCcEEeecCCC--------CChHHHHHHhccchH
Q 007334 261 SLMLGF----GDPIAISAETG--------LGMTELYEALRPSVE 292 (607)
Q Consensus 261 ~~~~~~----~~~i~iSA~~g--------~gi~eL~~~i~~~l~ 292 (607)
+...++ .+++++||++| .|+++|++.|.+.++
T Consensus 442 Lk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 442 LSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp HHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred HHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 444554 26799999999 468889988877654
No 332
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.65 E-value=5.5e-16 Score=147.55 Aligned_cols=145 Identities=19% Similarity=0.266 Sum_probs=101.8
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEE--EEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTV--YLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~--~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.++|+++|++|||||||+++|++... .....++++.+...+.+.++|..+ .+|||||+.+... + ...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~-~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~------~----~~~ 97 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEF-NLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRA------I----TSA 97 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-CCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSC------C----CHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCC-CCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhh------h----hHH
Confidence 47999999999999999999998743 233455566666677788888755 5799999755421 0 124
Q ss_pred HHhhccEEEEEeccchhh-------H---H----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEVR-------A---V----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~~-------~---~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
++..+|++++|+|.++.. . . ..+.|+++|+||+|+.+...... +. .+ .+.. ..++
T Consensus 98 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~--~~-a~----~l~~----~~~~ 166 (191)
T 1oix_A 98 YYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPT--DE-AR----AFAE----KNGL 166 (191)
T ss_dssp HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCH--HH-HH----HHHH----HTTC
T ss_pred HhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCH--HH-HH----HHHH----HcCC
Confidence 556799999999987640 0 1 13689999999999975322111 11 01 1111 1256
Q ss_pred CEEEcccCCCCCHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
.++++||+++.|++++|+.+.+.
T Consensus 167 ~~ld~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 167 SFIETSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHH
Confidence 89999999999999999988764
No 333
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.65 E-value=4.6e-16 Score=176.23 Aligned_cols=163 Identities=20% Similarity=0.222 Sum_probs=107.5
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCc--------------eeeeE-------------------------
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGL--------------TRDSV------------------------- 363 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gt--------------T~~~~------------------------- 363 (607)
..++|+|+|.+|+|||||+|+|+|.....++..|+| |++..
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 358999999999999999999999887788888877 33210
Q ss_pred --------------EEEEEEcC----eEEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh------h
Q 007334 364 --------------RVHFEYQG----RTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV------R 419 (607)
Q Consensus 364 --------------~~~~~~~~----~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~------~ 419 (607)
...+.+.. ..+.||||||+.+... ....+..++..||++|+|+|++.+ .
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~-------~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~ 220 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA-------RNELSLGYVNNCHAILFVMRASQPCTLGERR 220 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT-------CHHHHTHHHHSSSEEEEEEETTSTTCHHHHH
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh-------HHHHHHHHHHhCCEEEEEEeCCCccchhHHH
Confidence 00111111 3689999999765321 124556788999999999999764 1
Q ss_pred ----H-HhcCCcEEEEEeCccCCCCc----CchHHHHH----HHHhcHHHHHhhCC----CCCCCCEEEcccC-------
Q 007334 420 ----A-VEEGRGLVVIVNKMDLLSGR----QNSALYKR----VKEAVPQEIQTVIP----QVTGIPVVFTSAL------- 475 (607)
Q Consensus 420 ----~-~~~~~p~ivv~NK~Dl~~~~----~~~~~~~~----~~~~~~~~~~~~~~----~~~~~~~v~iSA~------- 475 (607)
. ...++|+++|+||+|+.... ...+..+. +.+.+...+..... .....++++|||+
T Consensus 221 ~l~~~l~~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~ 300 (695)
T 2j69_A 221 YLENYIKGRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRL 300 (695)
T ss_dssp HHHHHTTTSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHH
T ss_pred HHHHHHHhhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhc
Confidence 1 12378999999999987542 10011111 21111122222211 0123579999999
Q ss_pred -------CCCCHHHHHHHHHHHHH
Q 007334 476 -------EGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 476 -------~g~gv~~l~~~i~~~~~ 492 (607)
+|.|+++++..+.+.+.
T Consensus 301 ~~~~~~~~~~Gi~~L~~~L~~~l~ 324 (695)
T 2j69_A 301 KNPQADLDGTGFPKFMDSLNTFLT 324 (695)
T ss_dssp HCTTCCCTTSSHHHHHHHHHHHHH
T ss_pred cCchhhhhccCHHHHHHHHHHHHH
Confidence 99999999999887654
No 334
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.65 E-value=2.6e-16 Score=174.31 Aligned_cols=158 Identities=18% Similarity=0.223 Sum_probs=100.4
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCC-CceeeeEEEEEEEc------------------CeEEEEEecCCCcc
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEA-GLTRDSVRVHFEYQ------------------GRTVYLVDTAGWLQ 384 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~-gtT~~~~~~~~~~~------------------~~~~~liDTpG~~~ 384 (607)
+++|+++|++|+|||||+++|++... ....+ |+|.+.....+.+. ...+.||||||+.+
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~~~~v--~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIRGSAV--ASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH--SCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccC--ccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 57899999999999999999997532 22222 45544322222221 12589999999877
Q ss_pred cccccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCc------------
Q 007334 385 REKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQN------------ 442 (607)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~------------ 442 (607)
+..... +++..+|++|+|+|++++ .....++|+|+|+||+|+......
T Consensus 83 F~~~~~----------r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~ 152 (594)
T 1g7s_A 83 FTTLRK----------RGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSK 152 (594)
T ss_dssp CTTSBC----------SSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTT
T ss_pred HHHHHH----------HHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCCchHHHHHH
Confidence 632111 345679999999999984 233468999999999999753110
Q ss_pred --h---HHHHHHHHhcHHHHHhh-C---------CCCCCCCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 443 --S---ALYKRVKEAVPQEIQTV-I---------PQVTGIPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 443 --~---~~~~~~~~~~~~~~~~~-~---------~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
. +.+......+..++.+. + .....+|++++||++|.|+++|++.+......
T Consensus 153 ~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~ 218 (594)
T 1g7s_A 153 QDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ 218 (594)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence 1 11111111122222211 1 01234689999999999999999998876543
No 335
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.64 E-value=1.1e-16 Score=173.40 Aligned_cols=152 Identities=25% Similarity=0.265 Sum_probs=91.0
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCcee------------------------e------cCCCCceeeeEEEEEEEcCe
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVL------------------------V------GPEAGLTRDSVRVHFEYQGR 372 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~------------------------~------~~~~gtT~~~~~~~~~~~~~ 372 (607)
..++|+++|++|+|||||+++|++..... + ....|+|.+.....+.+++.
T Consensus 42 ~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~ 121 (467)
T 1r5b_A 42 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHR 121 (467)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSE
T ss_pred CeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCe
Confidence 35799999999999999999997522110 1 12357888876667778899
Q ss_pred EEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh-----------------hHHhcCCc-EEEEEeCc
Q 007334 373 TVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV-----------------RAVEEGRG-LVVIVNKM 434 (607)
Q Consensus 373 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~-----------------~~~~~~~p-~ivv~NK~ 434 (607)
.+.||||||+.++. ..+..++..+|++|+|+|++++ .....++| +|+|+||+
T Consensus 122 ~~~iiDtPGh~~f~----------~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~ 191 (467)
T 1r5b_A 122 RFSLLDAPGHKGYV----------TNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKM 191 (467)
T ss_dssp EEEECCCCC---------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECT
T ss_pred EEEEEECCCcHHHH----------HHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECc
Confidence 99999999986552 1234566789999999999874 11235787 99999999
Q ss_pred cCCCCcCchHHHHHHHHhcHHHHHhhCCCC--CCCCEEEcccCCCCCHHHHH
Q 007334 435 DLLSGRQNSALYKRVKEAVPQEIQTVIPQV--TGIPVVFTSALEGRGRIAVM 484 (607)
Q Consensus 435 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~iSA~~g~gv~~l~ 484 (607)
|+.......+.++.+...+...+....... ..++++++||++|.|+.+++
T Consensus 192 Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 192 DEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp TSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred cCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 996532112223333333322222210110 14689999999999998766
No 336
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.64 E-value=4.9e-16 Score=179.10 Aligned_cols=154 Identities=19% Similarity=0.192 Sum_probs=96.9
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCC------c---------eeecCCCCceeeeEEEEEEEcCeEEEEEecCCCccccc
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQED------R---------VLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREK 387 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~------~---------~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~ 387 (607)
..++|+++|++|+|||||+++|++.. . .......|+|.+.....+...+..+.||||||+.++
T Consensus 295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF-- 372 (1289)
T 3avx_A 295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY-- 372 (1289)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH--
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH--
Confidence 35899999999999999999998741 0 011235678887655566667889999999996543
Q ss_pred ccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCc-EEEEEeCccCCCCcCchHHHHHHHHhcHHH
Q 007334 388 EKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRG-LVVIVNKMDLLSGRQNSALYKRVKEAVPQE 456 (607)
Q Consensus 388 ~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p-~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 456 (607)
. ..+..++..+|++|+|+|++++ .....++| +|+|+||+|+.+.. +.++.+.+.+...
T Consensus 373 -------~-~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~---e~le~i~eEi~el 441 (1289)
T 3avx_A 373 -------V-KNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDE---ELLELVEMEVREL 441 (1289)
T ss_dssp -------H-HHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCH---HHHHHHHHHHHHH
T ss_pred -------H-HHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccch---hhHHHHHHHHHHH
Confidence 1 2344567789999999999875 22245888 79999999998632 1222222222222
Q ss_pred HHhhCCCCCCCCEEEcccCCCC--------CHHHHHHHHHH
Q 007334 457 IQTVIPQVTGIPVVFTSALEGR--------GRIAVMHQVID 489 (607)
Q Consensus 457 ~~~~~~~~~~~~~v~iSA~~g~--------gv~~l~~~i~~ 489 (607)
+...-.....+|++++||++|. |+.++++.+..
T Consensus 442 Lk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~ 482 (1289)
T 3avx_A 442 LSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDS 482 (1289)
T ss_dssp HHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhh
Confidence 2211111124799999999993 45555555543
No 337
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.64 E-value=1.3e-16 Score=176.33 Aligned_cols=149 Identities=17% Similarity=0.149 Sum_probs=91.2
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEE------EEEE----cCeEEEEEecCCCcccccccCcc
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRV------HFEY----QGRTVYLVDTAGWLQREKEKGPA 392 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~------~~~~----~~~~~~liDTpG~~~~~~~~~~~ 392 (607)
..+||+++|.+|||||||+|+|++... .....+.+..+.... .+.. .+..+.+|||||......
T Consensus 40 ~~~kV~lvG~~~vGKSSLl~~l~~~~~-~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~----- 113 (535)
T 3dpu_A 40 QEIKVHLIGDGMAGKTSLLKQLIGETF-DPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHA----- 113 (535)
T ss_dssp CEEEEEEESSSCSSHHHHHHHHHC------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTT-----
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHH-----
Confidence 358999999999999999999997642 111112222222211 1111 257899999999654321
Q ss_pred hhHHHHHHHHHhhccEEEEEeccchh--------h--HHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCC
Q 007334 393 SLSVMQSRKNLMRAHVVALVLDAEEV--------R--AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIP 462 (607)
Q Consensus 393 ~~~~~~~~~~i~~ad~~llViD~~~~--------~--~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (607)
. ...+++.+|++|+|+|++.. . ....++|+|+|+||+|+.+...... +. ..+.+
T Consensus 114 -~----~~~~l~~~d~ii~V~D~s~~~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~--~~--------~~~~~- 177 (535)
T 3dpu_A 114 -S----HQFFMTRSSVYMLLLDSRTDSNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQ--KK--------INERF- 177 (535)
T ss_dssp -T----CHHHHHSSEEEEEEECGGGGGGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCH--HH--------HHHHC-
T ss_pred -H----HHHHccCCcEEEEEEeCCCchhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCH--HH--------HHHHH-
Confidence 1 12456789999999999875 1 1224599999999999986533211 11 11111
Q ss_pred CCCCCCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 463 QVTGIPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 463 ~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
...+.+++++||++|.|++++++.+.+.+.+
T Consensus 178 ~~~~~~~~~vSA~~g~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 178 PAIENRFHRISCKNGDGVESIAKSLKSAVLH 208 (535)
T ss_dssp GGGTTCEEECCC-----CTTHHHHHHHHHTC
T ss_pred HhcCCceEEEecCcccCHHHHHHHHHHHHhc
Confidence 1235689999999999999999999887654
No 338
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.64 E-value=4.7e-17 Score=172.25 Aligned_cols=89 Identities=29% Similarity=0.291 Sum_probs=49.1
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEE---------------------c---CeEEEEEecC
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEY---------------------Q---GRTVYLVDTA 380 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~---------------------~---~~~~~liDTp 380 (607)
++|+++|.||||||||+|+|++.. +.++++|++|+++..+...+ + ..++.|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtp 79 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA 79 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECC
Confidence 479999999999999999999886 78899999999887765332 2 2578999999
Q ss_pred CCcccccccCcchhHHHHHHHHHhhccEEEEEeccch
Q 007334 381 GWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEE 417 (607)
Q Consensus 381 G~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~ 417 (607)
|+.+.... . ..+ ......+++.+|++++|+|+++
T Consensus 80 G~~~~a~~-~-~~l-~~~~l~~i~~aD~il~VvD~~~ 113 (397)
T 1wxq_A 80 GLVPGAHE-G-RGL-GNKFLDDLRMASALIHVVDATG 113 (397)
T ss_dssp ------------------CCCSSTTCSEEEEEEETTC
T ss_pred Ccccchhh-h-hhH-HHHHHHHHhcCCEEEEEEeccc
Confidence 98653110 0 001 0122245788999999999965
No 339
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.63 E-value=5.6e-16 Score=175.44 Aligned_cols=117 Identities=18% Similarity=0.198 Sum_probs=88.5
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceee-----------ecc------CCCCceeeeeEEEEeeeCCeeEEEecCCCCc
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREAL-----------VYN------TPDDHVTRDIREGLAKLGDLRFKVLDSAGLE 181 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~-----------v~~------~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~ 181 (607)
..++|+|+|++|||||||+|+|++....+ +.+ .++ +|.......+.+.+..++||||||+.
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~g--iTi~~~~~~~~~~~~~i~liDTPG~~ 86 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRG--ITITSAATTAAWEGHRVNIIDTPGHV 86 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC---------------------------CCSEEEEEETTEEEEEECCCCCS
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcC--ceEeeeeEEEEECCeeEEEEECcCCc
Confidence 35789999999999999999999532111 111 123 56666666777889999999999998
Q ss_pred cccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccC
Q 007334 182 TEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHN 249 (607)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~ 249 (607)
. +...+..++..+|++|+|+|++++.+..+..+...+... +.|+++|+||+|+...
T Consensus 87 d----------f~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~--~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 87 D----------FTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTY--GVPRIVFVNKMDKLGA 142 (693)
T ss_dssp S----------CCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHT--TCCEEEEEECTTSTTC
T ss_pred c----------hHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHc--CCCEEEEEECCCcccc
Confidence 3 334456778889999999999999998887777777765 7899999999998754
No 340
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.63 E-value=6.5e-16 Score=169.35 Aligned_cols=116 Identities=18% Similarity=0.207 Sum_probs=86.4
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceee---------------ecc------CCCCceeeeeEEEEeeeCCeeEEEecCC
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREAL---------------VYN------TPDDHVTRDIREGLAKLGDLRFKVLDSA 178 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~---------------v~~------~~~~~~T~~~~~~~~~~~~~~~~liDTp 178 (607)
.++|+|+|++|||||||+|+|+.....+ +.+ ..+ +|.+.....+.+.+..+.|||||
T Consensus 13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rG--iTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRG--ISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC---------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCC--cceeeeEEEEEECCeEEEEEECC
Confidence 4789999999999999999999642211 111 122 44444455667788999999999
Q ss_pred CCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccC
Q 007334 179 GLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHN 249 (607)
Q Consensus 179 G~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~ 249 (607)
|+. ++...+..++..+|++|+|+|++++.......+...+... ++|+++|+||+|+...
T Consensus 91 G~~----------df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~--~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 91 GHE----------DFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLR--DTPILTFMNKLDRDIR 149 (529)
T ss_dssp CST----------TCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTT--TCCEEEEEECTTSCCS
T ss_pred CCh----------hHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHc--CCCEEEEEcCcCCccc
Confidence 997 3334566788999999999999999887776676666554 7899999999998753
No 341
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.63 E-value=1.9e-17 Score=171.82 Aligned_cols=198 Identities=19% Similarity=0.204 Sum_probs=121.2
Q ss_pred CceEEEEcCCCCchhHHHHHhhc------CCceeecCCCCcee-------------------------------------
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQ------EDRVLVGPEAGLTR------------------------------------- 360 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~------~~~~~~~~~~gtT~------------------------------------- 360 (607)
...++++|+||+|||||+|.|++ ......+..++++.
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~tr 134 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAA 134 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccchHH
Confidence 45799999999999999999984 33333332222211
Q ss_pred eeEEE--EEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchhhH---Hh---cCCcEEEEEe
Q 007334 361 DSVRV--HFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEVRA---VE---EGRGLVVIVN 432 (607)
Q Consensus 361 ~~~~~--~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~~~---~~---~~~p~ivv~N 432 (607)
+.... .+...+.++.|+||||+.+.. . .....+|++++|+|+..+.. .. ...|.++++|
T Consensus 135 ~~~e~~~~~~~~~~~~iliDT~Gi~~~~-------~------~v~~~~d~vl~v~d~~~~~~~~~i~~~i~~~~~ivvlN 201 (337)
T 2qm8_A 135 KTRETMLLCEAAGFDVILVETVGVGQSE-------T------AVADLTDFFLVLMLPGAGDELQGIKKGIFELADMIAVN 201 (337)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECSSSSCH-------H------HHHTTSSEEEEEECSCC------CCTTHHHHCSEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEECCCCCcch-------h------hHHhhCCEEEEEEcCCCcccHHHHHHHHhccccEEEEE
Confidence 11000 012357899999999986431 1 12357999999999864311 11 1346788889
Q ss_pred CccCCCCcCchHHHHHHHHhcHHHHHhhCCC---CCCCCEEEcccCCCCCHHHHHHHHHHHHHHHh-----cCCChHHHH
Q 007334 433 KMDLLSGRQNSALYKRVKEAVPQEIQTVIPQ---VTGIPVVFTSALEGRGRIAVMHQVIDTYQKWC-----LRLPTSRLN 504 (607)
Q Consensus 433 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~-----~~~~~~~l~ 504 (607)
|+|+..... ......+.+...+. .+.. .+..+++++||++|.|++++++.|.+....+. .+..+...+
T Consensus 202 K~Dl~~~~~---~s~~~~~~l~~a~~-l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~~~~~~~~~~~~r~~~~~ 277 (337)
T 2qm8_A 202 KADDGDGER---RASAAASEYRAALH-ILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSKLTATGEIAGKRREQDV 277 (337)
T ss_dssp CCSTTCCHH---HHHHHHHHHHHHHT-TBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred chhccCchh---HHHHHHHHHHHHHH-hccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 999864311 11111122211111 1110 11468999999999999999999988765332 112234456
Q ss_pred HHHHHHHHh------CCCC-CCCCcCcEEEEeecCCCCCEE
Q 007334 505 RWLRKVMGR------HSWK-DQSAQPKIKYFTQVKARPPTF 538 (607)
Q Consensus 505 ~~l~~~~~~------~~~~-~~~~~~ki~~~~q~~~~pp~f 538 (607)
.|+.+++.+ ++++ ..++..+++|.+|....||++
T Consensus 278 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 318 (337)
T 2qm8_A 278 KWMWALVHERLHQRLVGSAEVRQATAEAERAVAGGEHSPAA 318 (337)
T ss_dssp HHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHTTSSCHHH
T ss_pred HHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHcCCCCHHH
Confidence 666666554 3443 456778999999999999954
No 342
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.63 E-value=3.3e-17 Score=163.58 Aligned_cols=86 Identities=16% Similarity=0.115 Sum_probs=58.2
Q ss_pred ccCEEEEEEecCCC--CCHhHHH-HHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHh-cCCCCcEEeecCC
Q 007334 203 KTQFAIFMIDVRSG--LHPLDLE-VGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLM-LGFGDPIAISAET 276 (607)
Q Consensus 203 ~ad~vl~VvD~s~~--~~~~~~~-~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~-~~~~~~i~iSA~~ 276 (607)
+||++|+|+|++++ .+..... +...+.+. ..+.|+++|+||+|+...+.. +........ .+. +++++||++
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~-~~~e~SAk~ 238 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNL-QVVETSARS 238 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSC-CEEECBTTT
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCC-eEEEEECCC
Confidence 69999999999987 6665522 22222221 247899999999999653221 222222333 244 789999999
Q ss_pred CCChHHHHHHhccch
Q 007334 277 GLGMTELYEALRPSV 291 (607)
Q Consensus 277 g~gi~eL~~~i~~~l 291 (607)
|.|++++++.|.+.+
T Consensus 239 g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 239 NVNVDLAFSTLVQLI 253 (255)
T ss_dssp TBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999987654
No 343
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.63 E-value=2.1e-16 Score=171.24 Aligned_cols=151 Identities=18% Similarity=0.218 Sum_probs=92.5
Q ss_pred CCEEEEecCCCCchhHHHHHhhcccee------------------------eecc------CCCCceeeeeEEEEeeeCC
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREA------------------------LVYN------TPDDHVTRDIREGLAKLGD 169 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~------------------------~v~~------~~~~~~T~~~~~~~~~~~~ 169 (607)
..+|+++|++|+|||||+|+|+..... .+.+ ..+ +|.+..+..+...+
T Consensus 43 ~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~g--iTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 43 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKG--KTVEVGRAYFETEH 120 (467)
T ss_dssp EEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC------------------------------CCEEECSS
T ss_pred eeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcC--ceEEeeeEEEecCC
Confidence 468999999999999999999753211 1111 123 67777666777788
Q ss_pred eeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCC-------HhHHHHHHHHHhhCCCCc-EEEEe
Q 007334 170 LRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLH-------PLDLEVGKWLRKHAPQIK-PIVAM 241 (607)
Q Consensus 170 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~-------~~~~~~~~~l~~~~~~~p-~ilV~ 241 (607)
..+.||||||+. ++...+...+..+|++|+|+|++++.. .+..+....+... +.| +|+|+
T Consensus 121 ~~~~iiDtPGh~----------~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~--~vp~iivvi 188 (467)
T 1r5b_A 121 RRFSLLDAPGHK----------GYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ--GINHLVVVI 188 (467)
T ss_dssp EEEEECCCCC---------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT--TCSSEEEEE
T ss_pred eEEEEEECCCcH----------HHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHc--CCCEEEEEE
Confidence 999999999998 555666778899999999999998742 2334444444444 677 99999
Q ss_pred cCCCcccCCc--Cc----HHHHHHHHHhc-CCC-----CcEEeecCCCCChHHHH
Q 007334 242 NKCESLHNGT--GS----LAGAAAESLML-GFG-----DPIAISAETGLGMTELY 284 (607)
Q Consensus 242 NK~D~~~~~~--~~----~~~~~~~~~~~-~~~-----~~i~iSA~~g~gi~eL~ 284 (607)
||+|+..... .. ..+....+... ++. +++++||++|.|+.+++
T Consensus 189 NK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 189 NKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp ECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred ECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 9999964211 10 11222333344 543 47999999999998765
No 344
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.63 E-value=3.7e-16 Score=176.93 Aligned_cols=166 Identities=13% Similarity=0.189 Sum_probs=111.4
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCce------------eeeeEE------------------------
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHV------------TRDIRE------------------------ 162 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~------------T~~~~~------------------------ 162 (607)
..++|+|+|.+|||||||+|+|+|.+...++..|+..+ |++...
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 35789999999999999999999988777766665210 222100
Q ss_pred ---------------EEeeeCC----eeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHH
Q 007334 163 ---------------GLAKLGD----LRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLE 223 (607)
Q Consensus 163 ---------------~~~~~~~----~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~ 223 (607)
..+.+.. ..+.||||||+.... .....+..++..||++|+|+|++++.+..+..
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~-------~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~ 220 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTE-------ARNELSLGYVNNCHAILFVMRASQPCTLGERR 220 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHH-------TCHHHHTHHHHSSSEEEEEEETTSTTCHHHHH
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchh-------hHHHHHHHHHHhCCEEEEEEeCCCccchhHHH
Confidence 0000000 469999999987321 12355677889999999999999988887755
Q ss_pred HH-HHHHhhCCCCcEEEEecCCCcccCC---cCc---HH----HHH----HHHHhc-C-------CCCcEEeecC-----
Q 007334 224 VG-KWLRKHAPQIKPIVAMNKCESLHNG---TGS---LA----GAA----AESLML-G-------FGDPIAISAE----- 275 (607)
Q Consensus 224 ~~-~~l~~~~~~~p~ilV~NK~D~~~~~---~~~---~~----~~~----~~~~~~-~-------~~~~i~iSA~----- 275 (607)
.. +.+... +.|+++|+||+|+.... ... .. ... ...... + ..+++++||+
T Consensus 221 ~l~~~l~~~--~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~ 298 (695)
T 2j69_A 221 YLENYIKGR--GLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRR 298 (695)
T ss_dssp HHHHHTTTS--CCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHH
T ss_pred HHHHHHHhh--CCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHh
Confidence 33 344433 67899999999997643 111 00 010 011111 1 1257999999
Q ss_pred ---------CCCChHHHHHHhccchHH
Q 007334 276 ---------TGLGMTELYEALRPSVED 293 (607)
Q Consensus 276 ---------~g~gi~eL~~~i~~~l~~ 293 (607)
+|.|+++|++.|.+.+..
T Consensus 299 ~~~~~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 299 RLKNPQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp HHHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred hccCchhhhhccCHHHHHHHHHHHHHH
Confidence 999999999999876643
No 345
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.63 E-value=2.8e-16 Score=176.60 Aligned_cols=166 Identities=17% Similarity=0.169 Sum_probs=111.2
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceee----------------------------------------
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTR---------------------------------------- 158 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~---------------------------------------- 158 (607)
..|+|++||++|+|||||+|+|+|..+...+..+ +|+
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~---~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~ 126 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGI---VTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETD 126 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSC---SCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCcc---ccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHh
Confidence 4799999999999999999999997642122111 222
Q ss_pred -----------eeEEEEeee-CCeeEEEecCCCCccccC---chhHHHHHHHHHHHHh-hccCEEEEEEecCCCCCHhHH
Q 007334 159 -----------DIREGLAKL-GDLRFKVLDSAGLETEAT---SGSILDRTAGMTANVL-AKTQFAIFMIDVRSGLHPLDL 222 (607)
Q Consensus 159 -----------~~~~~~~~~-~~~~~~liDTpG~~~~~~---~~~~~~~~~~~~~~~~-~~ad~vl~VvD~s~~~~~~~~ 222 (607)
+.....+.. ....+.||||||+..... .......+...+..++ ..+|++++|+|++.+....+.
T Consensus 127 ~~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~ 206 (772)
T 3zvr_A 127 RVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA 206 (772)
T ss_dssp HHHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHH
T ss_pred hhcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHH
Confidence 111111111 234689999999985321 1122223444555555 578999999999998887775
Q ss_pred -HHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHH--hcCCCCcEEeecCCCCChHHHHHHhcc
Q 007334 223 -EVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESL--MLGFGDPIAISAETGLGMTELYEALRP 289 (607)
Q Consensus 223 -~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~--~~~~~~~i~iSA~~g~gi~eL~~~i~~ 289 (607)
.+++++... +.|+|+|+||+|+................ ..++.+++++||++|.|+++|++.|.+
T Consensus 207 l~ll~~L~~~--g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 207 LKIAKEVDPQ--GQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp HHHHHHHCTT--CSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred HHHHHHHHhc--CCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 577777665 78999999999998754332111110011 124446789999999999999998875
No 346
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.62 E-value=2.7e-16 Score=156.94 Aligned_cols=75 Identities=16% Similarity=0.113 Sum_probs=52.8
Q ss_pred hccEEEEEeccchh-------------hH----HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 405 RAHVVALVLDAEEV-------------RA----VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 405 ~ad~~llViD~~~~-------------~~----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
+||++|+|+|+++. .. ...++|+++|+||+|+.+... .+.. .++.. ...++
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~----v~~~-----~~~~~---~~~~~ 229 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERY----IRDA-----HTFAL---SKKNL 229 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHH----HHHH-----HHHHH---TSSSC
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHH----HHHH-----HHHHH---hcCCC
Confidence 59999999999862 11 124799999999999964311 1111 11111 11367
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+++++||++|.|++++|+.|.+.+
T Consensus 230 ~~~e~SAk~g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 230 QVVETSARSNVNVDLAFSTLVQLI 253 (255)
T ss_dssp CEEECBTTTTBSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 899999999999999999988754
No 347
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.62 E-value=1e-15 Score=173.26 Aligned_cols=116 Identities=18% Similarity=0.194 Sum_probs=87.7
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceee-----e------cc------CCCCceeeeeEEEEeeeCCeeEEEecCCCCcc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREAL-----V------YN------TPDDHVTRDIREGLAKLGDLRFKVLDSAGLET 182 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~-----v------~~------~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~ 182 (607)
.++|+|+|++|+|||||+|+|+.....+ + .+ ..+ .|.......+.+.+..++||||||+.
T Consensus 12 ~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~g--iTi~~~~~~~~~~~~~i~liDTPG~~- 88 (691)
T 1dar_A 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERG--ITITAAVTTCFWKDHRINIIDTPGHV- 88 (691)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHCC------------------------------CCEEEEEETTEEEEEECCCSST-
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcc--cccccceEEEEECCeEEEEEECcCcc-
Confidence 5789999999999999999998432111 1 11 223 55666666677789999999999997
Q ss_pred ccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccC
Q 007334 183 EATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHN 249 (607)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~ 249 (607)
++...+..++..+|++|+|+|++++.+.+...+...+... ++|+++|+||+|+...
T Consensus 89 ---------df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~--~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 89 ---------DFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKY--KVPRIAFANKMDKTGA 144 (691)
T ss_dssp ---------TCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHT--TCCEEEEEECTTSTTC
T ss_pred ---------chHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHc--CCCEEEEEECCCcccC
Confidence 3455667788999999999999999998887776666665 7899999999998754
No 348
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.62 E-value=2.4e-15 Score=151.35 Aligned_cols=126 Identities=16% Similarity=0.172 Sum_probs=92.4
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
.++|+++|.+|||||||+|+|++.....+++.++ +|.+.........+..+.+|||||+........ .+......
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~---~~~~~i~~ 113 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGERVVSISPFQS--EGPRPVMVSRSRAGFTLNIIDTPGLIEGGYIND---MALNIIKS 113 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSC--CCSSCEEEEEEETTEEEEEEECCCSEETTEECH---HHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCcccccCCCC--cceeeEEEEEeeCCeEEEEEECCCCCCCccchH---HHHHHHHH
Confidence 4689999999999999999999988766666666 777777777777899999999999975432211 12222222
Q ss_pred H--hhccCEEEEEEecCC-CCCHhHHHHHHHHHhhCC-C--CcEEEEecCCCcccCC
Q 007334 200 V--LAKTQFAIFMIDVRS-GLHPLDLEVGKWLRKHAP-Q--IKPIVAMNKCESLHNG 250 (607)
Q Consensus 200 ~--~~~ad~vl~VvD~s~-~~~~~~~~~~~~l~~~~~-~--~p~ilV~NK~D~~~~~ 250 (607)
+ ...+|++++|+|++. ..+..+..+.+.+.+... + .|+++|+||+|+...+
T Consensus 114 ~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 114 FLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp HTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred HhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 3 347999999988865 455556667777765422 2 6999999999987643
No 349
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.62 E-value=1.1e-15 Score=171.87 Aligned_cols=217 Identities=19% Similarity=0.214 Sum_probs=125.6
Q ss_pred EEeecCCCCChHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhcCCc
Q 007334 270 IAISAETGLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDR 349 (607)
Q Consensus 270 i~iSA~~g~gi~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~~~~ 349 (607)
-..++..+.|+++|...+.+... .+..+ . . ...-...+|+++|.+|+|||||+|+|+|...
T Consensus 16 ~~~~~~~~~~~~~li~~inkl~d-~l~~l-g----~-------------~~~i~lp~I~vvG~~saGKSSllnaL~g~~~ 76 (772)
T 3zvr_A 16 PRGSHMGNRGMEDLIPLVNRLQD-AFSAI-G----Q-------------NADLDLPQIAVVGGQSAGKSSVLENFVGRDF 76 (772)
T ss_dssp ---------CGGGHHHHHHHHHH-HHHTT-T----C-------------CGGGCCSEEEEEECTTTCHHHHHHHHHSSCC
T ss_pred CcccccccccHHHHHHHHHHHHH-HHHhc-C----c-------------cccCCCCEEEEECCCCCcHHHHHHHHhCCCc
Confidence 34567788898888876554322 11110 0 0 0011235899999999999999999998754
Q ss_pred eeecCC--------------------------------------------------CCceeeeEEEEEEE-cCeEEEEEe
Q 007334 350 VLVGPE--------------------------------------------------AGLTRDSVRVHFEY-QGRTVYLVD 378 (607)
Q Consensus 350 ~~~~~~--------------------------------------------------~gtT~~~~~~~~~~-~~~~~~liD 378 (607)
...+.- .+++.+.+...+.. +..++.|+|
T Consensus 77 LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g~~~~is~~~i~l~I~~P~~~qL~LVD 156 (772)
T 3zvr_A 77 LPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVD 156 (772)
T ss_dssp SCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHCSTTCCCSCCEEEEEEETTCCSEEEEE
T ss_pred cCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhcCCCCcccccceEEEEecCCCCceEEEE
Confidence 222211 12222333333333 234688999
Q ss_pred cCCCcccccccCc---chhHHHHHHHHH-hhccEEEEEeccchh-----------hHHhcCCcEEEEEeCccCCCCcCch
Q 007334 379 TAGWLQREKEKGP---ASLSVMQSRKNL-MRAHVVALVLDAEEV-----------RAVEEGRGLVVIVNKMDLLSGRQNS 443 (607)
Q Consensus 379 TpG~~~~~~~~~~---~~~~~~~~~~~i-~~ad~~llViD~~~~-----------~~~~~~~p~ivv~NK~Dl~~~~~~~ 443 (607)
|||+......... ..........++ ..+|++++|+|++.. .....++|+|+|+||+|+.+.....
T Consensus 157 TPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiDlv~~~~~~ 236 (772)
T 3zvr_A 157 LPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDA 236 (772)
T ss_dssp CCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTTSSCTTCCS
T ss_pred CCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcccCCcchhh
Confidence 9999764211111 111112233444 468999999999864 1113478999999999998654321
Q ss_pred HHHHHHHHhcHHHHHhhCCC-CCCCCEEEcccCCCCCHHHHHHHHHHH---------HHHHhcCCChHHHHHHHHHHHHh
Q 007334 444 ALYKRVKEAVPQEIQTVIPQ-VTGIPVVFTSALEGRGRIAVMHQVIDT---------YQKWCLRLPTSRLNRWLRKVMGR 513 (607)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~-~~~~~~v~iSA~~g~gv~~l~~~i~~~---------~~~~~~~~~~~~l~~~l~~~~~~ 513 (607)
. .+.. .+.+.. ..+.+++++||++|.|+++|++.+.+. +.....+..+..++++|++.+..
T Consensus 237 ~---~il~------~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e~~ffpe~P~yd~ltDr~g~~~LaEiLrEkL~~ 307 (772)
T 3zvr_A 237 R---DVLE------NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTN 307 (772)
T ss_dssp H---HHHT------TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHH
T ss_pred H---HHHH------HHhhhhhccCCceEEecccccccchhHHHHHHHHHHhccCCcchhhhhhcccHHHHHHHHHHHHHH
Confidence 1 0100 111111 234678999999999999999998863 23344677888888888877654
Q ss_pred C
Q 007334 514 H 514 (607)
Q Consensus 514 ~ 514 (607)
+
T Consensus 308 h 308 (772)
T 3zvr_A 308 H 308 (772)
T ss_dssp H
T ss_pred H
Confidence 3
No 350
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.62 E-value=3.1e-15 Score=149.92 Aligned_cols=126 Identities=16% Similarity=0.195 Sum_probs=93.3
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
..+|+++|.+|||||||+|+|++.+.+.+...++ +|.+.....+.+.+..+.||||||+........ .+......
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~---~~~~~i~~ 110 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQA--EGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNH---QALELIKG 110 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC---CCCCEEEEEEETTEEEEEEECCCSEETTEECH---HHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCC--cceeeEEEEEEECCeeEEEEECCCCCCcccchH---HHHHHHHH
Confidence 4689999999999999999999988766777666 788888888888999999999999985433221 22222223
Q ss_pred Hh--hccCEEEEEEecCC-CCCHhHHHHHHHHHhhCC---CCcEEEEecCCCcccCC
Q 007334 200 VL--AKTQFAIFMIDVRS-GLHPLDLEVGKWLRKHAP---QIKPIVAMNKCESLHNG 250 (607)
Q Consensus 200 ~~--~~ad~vl~VvD~s~-~~~~~~~~~~~~l~~~~~---~~p~ilV~NK~D~~~~~ 250 (607)
++ ..+|++++|+|+.. ..+..+..+.+++.+... ..|+++|+||+|+...+
T Consensus 111 ~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~ 167 (262)
T 3def_A 111 FLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPD 167 (262)
T ss_dssp HTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCST
T ss_pred HHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCC
Confidence 33 37899999988765 355556667777776522 24999999999987543
No 351
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.61 E-value=3.4e-15 Score=143.88 Aligned_cols=159 Identities=21% Similarity=0.235 Sum_probs=93.0
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCC-ceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccc-cCcchhH--HHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQED-RVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKE-KGPASLS--VMQ 398 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~-~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~-~~~~~~~--~~~ 398 (607)
...+|+++|++|||||||+|+|+|.. ...+.+.+|+|.... .+.+++ .+.+|||||+...... ...+.+. ...
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~--~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 101 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLIN--LFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALGE 101 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEE--EEEEET-TEEEEECCCCC------CCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeE--EEEecC-CEEEEECcCCcccccCHHHHHHHHHHHHH
Confidence 35789999999999999999999875 345678888887643 334444 6789999997543111 0011111 111
Q ss_pred HHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 399 SRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 399 ~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
.......+|++++|+|++.+ .....++|+++|+||+|+............+.. .+ ... ...++
T Consensus 102 ~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~----~~-~~~--~~~~~ 174 (210)
T 1pui_A 102 YLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVRE----AV-LAF--NGDVQ 174 (210)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHH----HH-GGG--CSCEE
T ss_pred HHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHH----HH-Hhc--CCCCc
Confidence 11222468999999999764 122358999999999998764221111111111 11 111 12457
Q ss_pred EEEcccCCCCCHHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
++++||+++.|++++++.+.+..
T Consensus 175 ~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 175 VETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHH
T ss_pred eEEEeecCCCCHHHHHHHHHHHH
Confidence 89999999999999998887654
No 352
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.60 E-value=6.8e-15 Score=166.71 Aligned_cols=117 Identities=15% Similarity=0.136 Sum_probs=89.2
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceee-----------ecc------CCCCceeeeeEEEEeeeCC-------eeEEE
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREAL-----------VYN------TPDDHVTRDIREGLAKLGD-------LRFKV 174 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~-----------v~~------~~~~~~T~~~~~~~~~~~~-------~~~~l 174 (607)
..++|+|+|++|+|||||+++|+.....+ +.+ ..+ .|.......+.+.+ ..++|
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rg--iTi~~~~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERG--ITITSAATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcC--ceeeeceEEEEECCccccCCceeEEE
Confidence 36799999999999999999997532111 111 122 45555555566666 89999
Q ss_pred ecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccC
Q 007334 175 LDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHN 249 (607)
Q Consensus 175 iDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~ 249 (607)
|||||+. ++...+..++..+|++|+|+|++++...+...+...+... +.|+++|+||+|+...
T Consensus 87 iDTPG~~----------df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~--~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 87 IDTPGHV----------DFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKY--KVPRIAFVNKMDRMGA 149 (704)
T ss_pred EeCCCcc----------chHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHc--CCCEEEEEeCCCcccc
Confidence 9999998 4556677888999999999999999887776666666554 7899999999998753
No 353
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.60 E-value=2.9e-15 Score=164.15 Aligned_cols=106 Identities=21% Similarity=0.313 Sum_probs=78.1
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCcee---------------e------cCCCCceeeeEEEEEEEcCeEEEEEecCCC
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVL---------------V------GPEAGLTRDSVRVHFEYQGRTVYLVDTAGW 382 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~---------------~------~~~~gtT~~~~~~~~~~~~~~~~liDTpG~ 382 (607)
..+|+++|++|+|||||+++|++....+ + ....|+|.+.....+.+.+..+.||||||+
T Consensus 13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~ 92 (529)
T 2h5e_A 13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGH 92 (529)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCC
Confidence 4789999999999999999999642111 1 124566666666678889999999999998
Q ss_pred cccccccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCC
Q 007334 383 LQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSG 439 (607)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~ 439 (607)
.++. ..+.+++..+|++|+|+|++++ .....++|+++|+||+|+...
T Consensus 93 ~df~----------~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 93 EDFS----------EDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIR 149 (529)
T ss_dssp TTCC----------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCS
T ss_pred hhHH----------HHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccc
Confidence 6552 2345678899999999999875 122358999999999999764
No 354
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.60 E-value=1e-15 Score=148.49 Aligned_cols=135 Identities=19% Similarity=0.255 Sum_probs=80.5
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCcee--ecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVL--VGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~--~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++..... .+..++++.+. .+..+.+|||||+.+.. ....
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~Dt~G~~~~~----------~~~~ 73 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-------DGSGVTLVDFPGHVKLR----------YKLS 73 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG-------GGSSCEEEECCCCGGGT----------HHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe-------eCceEEEEECCCcHHHH----------HHHH
Confidence 35799999999999999999999875321 12333333332 56688999999975442 1122
Q ss_pred HHHhh----ccEEEEEeccc-hh-----------hH-------HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHH
Q 007334 401 KNLMR----AHVVALVLDAE-EV-----------RA-------VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEI 457 (607)
Q Consensus 401 ~~i~~----ad~~llViD~~-~~-----------~~-------~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 457 (607)
.+++. +|++|+|+|++ +. .. ...++|+++|+||+|+..........+.+.+.+. .+
T Consensus 74 ~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~-~~ 152 (218)
T 1nrj_B 74 DYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQ-KV 152 (218)
T ss_dssp HHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHH-HH
T ss_pred HHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHH-HH
Confidence 33333 89999999998 32 11 1248999999999999876543333222222211 11
Q ss_pred HhhCCCCCCCCEEEcccCCCCC
Q 007334 458 QTVIPQVTGIPVVFTSALEGRG 479 (607)
Q Consensus 458 ~~~~~~~~~~~~v~iSA~~g~g 479 (607)
.. ..+.+++++||++|.+
T Consensus 153 ~~----~~~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 153 IE----RRKKSLNEVERKINEE 170 (218)
T ss_dssp HH----HHHHHHHC--------
T ss_pred HH----HHhccccccccccccc
Confidence 11 1235788999999876
No 355
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.60 E-value=3.3e-15 Score=152.70 Aligned_cols=145 Identities=20% Similarity=0.260 Sum_probs=97.7
Q ss_pred HHhhccCEEEEEEecCCCC-CHhHH-HHHHHHHhhCCCCcEEEEecCCCcccCCcCc-HHHHHHHHHhcCCCCcEEeecC
Q 007334 199 NVLAKTQFAIFMIDVRSGL-HPLDL-EVGKWLRKHAPQIKPIVAMNKCESLHNGTGS-LAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~-~~~~~-~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~-~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
.+++++|++++|+|++++. +.... .++..+.. .++|+++|+||+|+.+..... .......+...++ +++++||+
T Consensus 75 ~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~--~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~-~~~~~SA~ 151 (302)
T 2yv5_A 75 PKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY--FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGY-DVLKVSAK 151 (302)
T ss_dssp TEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH--TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTC-EEEECCTT
T ss_pred HHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh--CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCC-eEEEEECC
Confidence 4689999999999999875 54431 12233343 378999999999997642111 2223334445677 78999999
Q ss_pred CCCChHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhcCCceeecCC
Q 007334 276 TGLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPE 355 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~ 355 (607)
+|.|+++|++.+.. -.++++|++|||||||+|.|+ .....++..
T Consensus 152 ~g~gi~~L~~~l~G-----------------------------------~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i 195 (302)
T 2yv5_A 152 TGEGIDELVDYLEG-----------------------------------FICILAGPSGVGKSSILSRLT-GEELRTQEV 195 (302)
T ss_dssp TCTTHHHHHHHTTT-----------------------------------CEEEEECSTTSSHHHHHHHHH-SCCCCCSCC
T ss_pred CCCCHHHHHhhccC-----------------------------------cEEEEECCCCCCHHHHHHHHH-HhhCccccc
Confidence 99999999886542 247999999999999999998 654444443
Q ss_pred CC-------ceeeeEEEEEEEcCeEEEEEecCCCccc
Q 007334 356 AG-------LTRDSVRVHFEYQGRTVYLVDTAGWLQR 385 (607)
Q Consensus 356 ~g-------tT~~~~~~~~~~~~~~~~liDTpG~~~~ 385 (607)
.. +|+... .+...+ --.++||||+...
T Consensus 196 ~~~~~~G~~~t~~~~--~~~~~~-~g~v~d~pg~~~~ 229 (302)
T 2yv5_A 196 SEKTERGRHTTTGVR--LIPFGK-GSFVGDTPGFSKV 229 (302)
T ss_dssp ---------CCCCEE--EEEETT-TEEEESSCCCSSC
T ss_pred ccccCCCCCceeeEE--EEEcCC-CcEEEECcCcCcC
Confidence 32 343321 122222 2368999998643
No 356
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.60 E-value=1.6e-15 Score=159.18 Aligned_cols=164 Identities=16% Similarity=0.195 Sum_probs=103.9
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeee---------------------------------------
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRD--------------------------------------- 159 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~--------------------------------------- 159 (607)
.+|.|+|||.+|||||||+|+|+|..+...+... +|+.
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~---vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ 109 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGI---VTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQD 109 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSS---CCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCc---ccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHH
Confidence 3689999999999999999999997642111110 1111
Q ss_pred ---------------eEEEE-eeeCCeeEEEecCCCCccccC---chhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHh
Q 007334 160 ---------------IREGL-AKLGDLRFKVLDSAGLETEAT---SGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPL 220 (607)
Q Consensus 160 ---------------~~~~~-~~~~~~~~~liDTpG~~~~~~---~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~ 220 (607)
..... .......+.+|||||+..... ...........+..++..+|++|+|+|.+......
T Consensus 110 ~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~ 189 (360)
T 3t34_A 110 ETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT 189 (360)
T ss_dssp HHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG
T ss_pred HHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC
Confidence 00111 111245799999999985421 22333456677888999999999999876533222
Q ss_pred HHHHHHHHHhhC-CCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCChHHHHHHh
Q 007334 221 DLEVGKWLRKHA-PQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEAL 287 (607)
Q Consensus 221 ~~~~~~~l~~~~-~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi~eL~~~i 287 (607)
..+..+++... .+.|+|+|+||+|+.................++. .++++|+.++.|+++.++.+
T Consensus 190 -~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~v~~~s~~~i~~~~~~~ 255 (360)
T 3t34_A 190 -SDAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKY-PWVGVVNRSQADINKNVDMI 255 (360)
T ss_dssp -CHHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSS-CCEEECCCCHHHHHTTCCHH
T ss_pred -HHHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccC-CeEEEEECChHHhccCCCHH
Confidence 22344444432 2679999999999987544332222111223344 67999999999988765543
No 357
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.59 E-value=6.1e-15 Score=147.72 Aligned_cols=113 Identities=19% Similarity=0.227 Sum_probs=83.4
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
.++|+++|.+|||||||+|+|++.....+++++++|.+.....+.+++..+.||||||+.++.... +.+ .....+++
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~--~~~-~~~i~~~l 112 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVN--HQA-LELIKGFL 112 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEEC--HHH-HHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccch--HHH-HHHHHHHH
Confidence 589999999999999999999998777888999999999888889999999999999987653111 111 11111122
Q ss_pred --hhccEEEEEeccchh----------hHH----hc--CCcEEEEEeCccCCCC
Q 007334 404 --MRAHVVALVLDAEEV----------RAV----EE--GRGLVVIVNKMDLLSG 439 (607)
Q Consensus 404 --~~ad~~llViD~~~~----------~~~----~~--~~p~ivv~NK~Dl~~~ 439 (607)
..+|++|+|+|++.. ..+ .. .+|+++|+||+|+...
T Consensus 113 ~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 113 VNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp TTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred hcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence 278999999776542 011 11 2499999999999643
No 358
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.59 E-value=5e-15 Score=167.68 Aligned_cols=106 Identities=25% Similarity=0.321 Sum_probs=77.9
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCce-----------eecC------CCCceeeeEEEEEEEcCeEEEEEecCCCcccc
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRV-----------LVGP------EAGLTRDSVRVHFEYQGRTVYLVDTAGWLQRE 386 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~-----------~~~~------~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~ 386 (607)
..+|+|+|++|+|||||+|+|++.... .+.+ .+|+|+......+.+++..+.||||||+.++.
T Consensus 10 ~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~ 89 (693)
T 2xex_A 10 TRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDFT 89 (693)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcchH
Confidence 468999999999999999999942111 1112 35777777777788899999999999986542
Q ss_pred cccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCC
Q 007334 387 KEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSG 439 (607)
Q Consensus 387 ~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~ 439 (607)
..+.++++.+|++|+|+|++++ .....++|+++|+||+|+...
T Consensus 90 ----------~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 90 ----------VEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp ----------HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC
T ss_pred ----------HHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCcccc
Confidence 2345678889999999999875 233468999999999999764
No 359
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.59 E-value=6.7e-15 Score=166.01 Aligned_cols=114 Identities=18% Similarity=0.204 Sum_probs=89.6
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceee-----e------cc------CCCCceeeeeEEEEeeeCCeeEEEecCCCCcc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREAL-----V------YN------TPDDHVTRDIREGLAKLGDLRFKVLDSAGLET 182 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~-----v------~~------~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~ 182 (607)
..+|+|+|++|+|||||+++|++....+ + .+ ..+ +|.......+.+.+..++||||||+.
T Consensus 9 ~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~g--iti~~~~~~~~~~~~~~nliDTpG~~- 85 (665)
T 2dy1_A 9 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHR--TTVRTGVAPLLFRGHRVFLLDAPGYG- 85 (665)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTT--SCCSCEEEEEEETTEEEEEEECCCSG-
T ss_pred CcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcC--CeEEecceEEeeCCEEEEEEeCCCcc-
Confidence 4689999999999999999999543210 0 00 012 45555556666788999999999998
Q ss_pred ccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcc
Q 007334 183 EATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESL 247 (607)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~ 247 (607)
++...+..++..+|++++|+|++++.......+...+... +.|+++|+||+|+.
T Consensus 86 ---------~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~--~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 86 ---------DFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERL--GLPRMVVVTKLDKG 139 (665)
T ss_dssp ---------GGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHT--TCCEEEEEECGGGC
T ss_pred ---------chHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHc--cCCEEEEecCCchh
Confidence 4455677888999999999999999988887777777765 78999999999987
No 360
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.58 E-value=1.1e-14 Score=146.59 Aligned_cols=114 Identities=19% Similarity=0.248 Sum_probs=84.4
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHH-
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN- 402 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~- 402 (607)
.++|+++|.+|+|||||+|+|++.....+++.+++|.+.....+..++..+.||||||+.+..... ..+ .....++
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~--~~~-~~~i~~~~ 115 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYIN--DMA-LNIIKSFL 115 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEEC--HHH-HHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccch--HHH-HHHHHHHh
Confidence 589999999999999999999998777788999999998888888899999999999986652110 011 0111122
Q ss_pred -HhhccEEEEEeccchh----------hHH-h-cC----CcEEEEEeCccCCCCc
Q 007334 403 -LMRAHVVALVLDAEEV----------RAV-E-EG----RGLVVIVNKMDLLSGR 440 (607)
Q Consensus 403 -i~~ad~~llViD~~~~----------~~~-~-~~----~p~ivv~NK~Dl~~~~ 440 (607)
...+|++|+|+|++.. ..+ . .+ +|+++|+||+|+.+.+
T Consensus 116 ~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred hcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 2369999999776532 111 1 12 6999999999997653
No 361
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.58 E-value=1.5e-15 Score=158.26 Aligned_cols=153 Identities=21% Similarity=0.206 Sum_probs=91.2
Q ss_pred CceEEEEcCCCCchhHHHHHhhcC------Ccee-------------------------------ecCCC------Ccee
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQE------DRVL-------------------------------VGPEA------GLTR 360 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~------~~~~-------------------------------~~~~~------gtT~ 360 (607)
...|+|+|+||||||||+|+|++. .... +.+.+ |+|+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~tr 153 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVTR 153 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------CT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccchH
Confidence 468999999999999999999962 1112 22222 2333
Q ss_pred eeEEEE--EEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchhhH---H---hcCCcEEEEEe
Q 007334 361 DSVRVH--FEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEVRA---V---EEGRGLVVIVN 432 (607)
Q Consensus 361 ~~~~~~--~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~~~---~---~~~~p~ivv~N 432 (607)
+..... +...+..+.|+||||+.... ......+|++++|+|++.+.. . -...|.++|+|
T Consensus 154 ~~~~~~~~~~~~~~~~iliDT~Gi~~~~-------------~~l~~~~d~vl~V~d~~~~~~~~~i~~~il~~~~ivVlN 220 (349)
T 2www_A 154 TTNEAILLCEGAGYDIILIETVGVGQSE-------------FAVADMVDMFVLLLPPAGGDELQGIKRGIIEMADLVAVT 220 (349)
T ss_dssp THHHHHHHHHHTTCSEEEEECCCC--CH-------------HHHHTTCSEEEEEECCC------------CCSCSEEEEC
T ss_pred HHHHHHHhhccCCCCEEEEECCCcchhh-------------hhHHhhCCEEEEEEcCCcchhHHHhHHHHHhcCCEEEEe
Confidence 211110 11356789999999975321 122457999999999986511 1 13568899999
Q ss_pred CccCCCCcCchHHHHHHHHhcHHHHHhhCC--CCCCCCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 433 KMDLLSGRQNSALYKRVKEAVPQEIQTVIP--QVTGIPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 433 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
|+|+.+.... ......+...+....+ ..+..+++++||++|.|++++++.|.+.+..
T Consensus 221 K~Dl~~~~~~----~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 221 KSDGDLIVPA----RRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp CCSGGGHHHH----HHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred eecCCCchhH----HHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 9998643111 1111112111111111 1224689999999999999999999887643
No 362
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.58 E-value=8.3e-15 Score=153.74 Aligned_cols=177 Identities=16% Similarity=0.175 Sum_probs=109.0
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCcee--------------------------------------------
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTR-------------------------------------------- 360 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~-------------------------------------------- 360 (607)
.+|++||.+|||||||+|+|+|......+ ...+|+
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~-~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRG-SGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDR 113 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCCSCCC-SSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcCCCC-CCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHH
Confidence 38999999999999999999986532111 111121
Q ss_pred ----------eeEEEEEEE-cCeEEEEEecCCCccccc---ccCcchhHHHHHHHHHhhccEEEEEeccchh--------
Q 007334 361 ----------DSVRVHFEY-QGRTVYLVDTAGWLQREK---EKGPASLSVMQSRKNLMRAHVVALVLDAEEV-------- 418 (607)
Q Consensus 361 ----------~~~~~~~~~-~~~~~~liDTpG~~~~~~---~~~~~~~~~~~~~~~i~~ad~~llViD~~~~-------- 418 (607)
+.+...+.. ....+.||||||+.+... ...........+..++.++|++|+|+|++..
T Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~ 193 (360)
T 3t34_A 114 ETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAI 193 (360)
T ss_dssp TSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHH
T ss_pred hcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHH
Confidence 111111111 244789999999877522 1122233345667889999999999987532
Q ss_pred ----hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHHHH--
Q 007334 419 ----RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQ-- 492 (607)
Q Consensus 419 ----~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~-- 492 (607)
.....++|+|+|+||+|+.+..... .++.+......+.+++++|+.++.++++.+..+.....
T Consensus 194 ~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~-----------~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~~~~~e~ 262 (360)
T 3t34_A 194 KISREVDPSGDRTFGVLTKIDLMDKGTDA-----------VEILEGRSFKLKYPWVGVVNRSQADINKNVDMIAARKRER 262 (360)
T ss_dssp HHHHHSCTTCTTEEEEEECGGGCCTTCCS-----------HHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHhcccCCCEEEEEeCCccCCCcccH-----------HHHHcCccccccCCeEEEEECChHHhccCCCHHHHHHHHH
Confidence 1113478999999999998653211 11122233445678999999999988876544322211
Q ss_pred ----------HHhcCCChHHHHHHHHHHHHh
Q 007334 493 ----------KWCLRLPTSRLNRWLRKVMGR 513 (607)
Q Consensus 493 ----------~~~~~~~~~~l~~~l~~~~~~ 513 (607)
....+..+..|...|.+.+..
T Consensus 263 ~ff~~~~~~~~~~~~~g~~~L~~~l~~~l~~ 293 (360)
T 3t34_A 263 EYFSNTTEYRHLANKMGSEHLAKMLSKHLER 293 (360)
T ss_dssp HHHTTCTTTGGGGGGCSHHHHHHHHHHHHHH
T ss_pred HHhcCCCccccchhhcCHHHHHHHHHHHHHH
Confidence 112345666666666555543
No 363
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.58 E-value=1.4e-14 Score=153.47 Aligned_cols=152 Identities=27% Similarity=0.330 Sum_probs=110.6
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC-eEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG-RTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~-~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
-.|+|+|++|||||||+++|++.. ..+.+++++|.++..+.+.+++ ..+.++||||+.+..... ..+. ....+.+
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~-~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~--~~L~-~~fl~~~ 233 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAH-PKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEG--KGLG-LEFLRHI 233 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSC-CEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGS--CCSC-HHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHcCC-ccccCcccceecceeeEEEecCcceEEEEeccccccchhhh--hhhh-HHHHHHH
Confidence 468999999999999999999874 4677899999988888887776 789999999986541110 0111 1234566
Q ss_pred hhccEEEEEeccc-hh---------hH--H---hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 404 MRAHVVALVLDAE-EV---------RA--V---EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 404 ~~ad~~llViD~~-~~---------~~--~---~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
..+|.+|+|+|++ +. +. + ...+|.++|+||+|+... ..++.+. ..+. ..+.+
T Consensus 234 era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~----~~~~~l~----~~l~-----~~g~~ 300 (416)
T 1udx_A 234 ARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE----EAVKALA----DALA-----REGLA 300 (416)
T ss_dssp TSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH----HHHHHHH----HHHH-----TTTSC
T ss_pred HHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH----HHHHHHH----HHHH-----hcCCe
Confidence 7899999999996 32 11 1 236899999999998753 1222221 1111 12568
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
++++||+++.|++++++.|.+.+.+
T Consensus 301 vi~iSA~~g~gi~eL~~~i~~~l~~ 325 (416)
T 1udx_A 301 VLPVSALTGAGLPALKEALHALVRS 325 (416)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred EEEEECCCccCHHHHHHHHHHHHHh
Confidence 9999999999999999999887764
No 364
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.57 E-value=1.1e-14 Score=164.88 Aligned_cols=107 Identities=17% Similarity=0.200 Sum_probs=77.3
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCce-----e------ecC------CCCceeeeEEEEEEEcCeEEEEEecCCCccc
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRV-----L------VGP------EAGLTRDSVRVHFEYQGRTVYLVDTAGWLQR 385 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~-----~------~~~------~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~ 385 (607)
...+|+|+|++|+|||||+++|+..... . +.+ ..|+|.......+.+.+..+.||||||+.++
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 90 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDF 90 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTC
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccch
Confidence 3478999999999999999999842111 0 111 4567777767778889999999999998654
Q ss_pred ccccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCC
Q 007334 386 EKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSG 439 (607)
Q Consensus 386 ~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~ 439 (607)
. ..+.++++.+|++|+|+|++++ .....++|+++|+||+|+...
T Consensus 91 ~----------~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 91 T----------IEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGA 144 (691)
T ss_dssp H----------HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC
T ss_pred H----------HHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccC
Confidence 2 2345778899999999999875 233468999999999999764
No 365
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.56 E-value=9.2e-15 Score=138.72 Aligned_cols=112 Identities=22% Similarity=0.287 Sum_probs=72.4
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCce--eecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRV--LVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~--~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++.... ..+..++++.+. .+..+.+|||||+..... .......
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~Dt~G~~~~~~------~~~~~~~ 113 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-------DGSGVTLVDFPGHVKLRY------KLSDYLK 113 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC-------CCTTCSEEEETTCCBSSC------CHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee-------cCCeEEEEECCCCchHHH------HHHHHHH
Confidence 3579999999999999999999987532 123334444332 567888999999765421 1112223
Q ss_pred HHHhhccEEEEEeccc-hh-----------hH-------HhcCCcEEEEEeCccCCCCcCchHHHH
Q 007334 401 KNLMRAHVVALVLDAE-EV-----------RA-------VEEGRGLVVIVNKMDLLSGRQNSALYK 447 (607)
Q Consensus 401 ~~i~~ad~~llViD~~-~~-----------~~-------~~~~~p~ivv~NK~Dl~~~~~~~~~~~ 447 (607)
..+..+|++|+|+|++ +. .. ...++|+++|+||+|+.+.....+..+
T Consensus 114 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~ 179 (193)
T 2ged_A 114 TRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKD 179 (193)
T ss_dssp HHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHH
T ss_pred hhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHH
Confidence 3445599999999998 43 01 113899999999999987655443333
No 366
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.56 E-value=2.3e-14 Score=162.41 Aligned_cols=106 Identities=21% Similarity=0.228 Sum_probs=80.5
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCce-----------eecC------CCCceeeeEEEEEEEcC-------eEEEEEec
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRV-----------LVGP------EAGLTRDSVRVHFEYQG-------RTVYLVDT 379 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~-----------~~~~------~~gtT~~~~~~~~~~~~-------~~~~liDT 379 (607)
..+|+|+|++|+|||||+++|+..... .+.+ ..|+|.......+.+.+ ..+.||||
T Consensus 10 ~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liDT 89 (704)
T 2rdo_7 10 YRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDT 89 (704)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEeC
Confidence 478999999999999999999753211 1111 35677776666777777 88999999
Q ss_pred CCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCC
Q 007334 380 AGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSG 439 (607)
Q Consensus 380 pG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~ 439 (607)
||+.++. ..+.++++.+|++|+|+|++++ .....++|+++|+||+|+...
T Consensus 90 PG~~df~----------~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 90 PGHVDFT----------IEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGA 149 (704)
T ss_pred CCccchH----------HHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccc
Confidence 9986542 2345678889999999999875 233468999999999998754
No 367
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.56 E-value=2.5e-15 Score=157.21 Aligned_cols=153 Identities=26% Similarity=0.278 Sum_probs=94.8
Q ss_pred CceEEEEcCCCCchhHHHHHhhcC------CceeecCCCCcee-------ee-----------EE---------------
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQE------DRVLVGPEAGLTR-------DS-----------VR--------------- 364 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~------~~~~~~~~~gtT~-------~~-----------~~--------------- 364 (607)
...|+++|.||||||||+++|... ....+...|+.+. +. ..
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 158 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVTR 158 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccchhH
Confidence 468999999999999999999632 2222222222221 00 00
Q ss_pred ------EEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchhh---HH---hcCCcEEEEEe
Q 007334 365 ------VHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEVR---AV---EEGRGLVVIVN 432 (607)
Q Consensus 365 ------~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~~---~~---~~~~p~ivv~N 432 (607)
..+...+..+.||||||+.+. ....+..+|++|+|+|++... .. ...+|+++|+|
T Consensus 159 ~t~d~i~~~~~~~~~~iiiDTpGi~~~-------------~~~~~~~aD~vl~V~d~~~~~~~~~l~~~~~~~p~ivVlN 225 (355)
T 3p32_A 159 ATRETVVLLEAAGFDVILIETVGVGQS-------------EVAVANMVDTFVLLTLARTGDQLQGIKKGVLELADIVVVN 225 (355)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECSCSSH-------------HHHHHTTCSEEEEEEESSTTCTTTTCCTTSGGGCSEEEEE
T ss_pred HHHHHHHHHhhCCCCEEEEeCCCCCcH-------------HHHHHHhCCEEEEEECCCCCccHHHHHHhHhhcCCEEEEE
Confidence 001224678999999996432 112347899999999987651 11 12469999999
Q ss_pred CccCCCCcCchHHHHHHHHhcHHHHHhhCC--CCCCCCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 433 KMDLLSGRQNSALYKRVKEAVPQEIQTVIP--QVTGIPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 433 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
|+|+...... ....+.+...+...-. ..++.|++++||++|.|++++++.|.+.+..
T Consensus 226 K~Dl~~~~~~----~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 226 KADGEHHKEA----RLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp CCCGGGHHHH----HHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred CCCCcChhHH----HHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 9998643221 1112222222221111 1235789999999999999999999887654
No 368
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.56 E-value=3.3e-15 Score=155.78 Aligned_cols=154 Identities=18% Similarity=0.242 Sum_probs=90.7
Q ss_pred CCCEEEEecCCCCchhHHHHHhhcc------ceeeeccCCCC-----------------------c------------ee
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRR------REALVYNTPDD-----------------------H------------VT 157 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~------~~~~v~~~~~~-----------------------~------------~T 157 (607)
..+.|+|+|+||||||||+|+|++. +.+++...|.. + +|
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~t 152 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVT 152 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------C
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccch
Confidence 3679999999999999999999962 33333322220 0 11
Q ss_pred eeeEEEE--eeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCC
Q 007334 158 RDIREGL--AKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQI 235 (607)
Q Consensus 158 ~~~~~~~--~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~ 235 (607)
++..... +...+..+.++||||+... . ......+|++++|+|++.+..... +...+ ...
T Consensus 153 r~~~~~~~~~~~~~~~~iliDT~Gi~~~--------~-----~~l~~~~d~vl~V~d~~~~~~~~~--i~~~i----l~~ 213 (349)
T 2www_A 153 RTTNEAILLCEGAGYDIILIETVGVGQS--------E-----FAVADMVDMFVLLLPPAGGDELQG--IKRGI----IEM 213 (349)
T ss_dssp TTHHHHHHHHHHTTCSEEEEECCCC--C--------H-----HHHHTTCSEEEEEECCC------------------CCS
T ss_pred HHHHHHHHhhccCCCCEEEEECCCcchh--------h-----hhHHhhCCEEEEEEcCCcchhHHH--hHHHH----Hhc
Confidence 1111000 1235778999999998621 1 123578999999999987642221 11111 146
Q ss_pred cEEEEecCCCcccCCcCcHHHHHHHHH---h-------cCCCCcEEeecCCCCChHHHHHHhccchHH
Q 007334 236 KPIVAMNKCESLHNGTGSLAGAAAESL---M-------LGFGDPIAISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 236 p~ilV~NK~D~~~~~~~~~~~~~~~~~---~-------~~~~~~i~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
|.++|+||+|+..... .......+. . ....+++++||++|.|+++|++.|.+.++.
T Consensus 214 ~~ivVlNK~Dl~~~~~--~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 214 ADLVAVTKSDGDLIVP--ARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp CSEEEECCCSGGGHHH--HHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CCEEEEeeecCCCchh--HHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 8899999999874211 001111111 1 112356899999999999999999887643
No 369
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.55 E-value=1.2e-14 Score=152.27 Aligned_cols=159 Identities=20% Similarity=0.229 Sum_probs=76.3
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCC--------CCceeeeEEEEEEEcCe--EEEEEecCCCcccccc-c---
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPE--------AGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKE-K--- 389 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~--------~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~-~--- 389 (607)
.++|+++|++|+|||||+|+|++...+..... ++++.+.....+..++. .+.+|||||+.+.... +
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~ 116 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 116 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------C
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHH
Confidence 47899999999999999999987654433221 33344444444444554 6789999998554211 1
Q ss_pred CcchhHHHHHHHHHhh-------------ccEEEEEeccc-hh---------hHHhcCCcEEEEEeCccCCCCcCchHHH
Q 007334 390 GPASLSVMQSRKNLMR-------------AHVVALVLDAE-EV---------RAVEEGRGLVVIVNKMDLLSGRQNSALY 446 (607)
Q Consensus 390 ~~~~~~~~~~~~~i~~-------------ad~~llViD~~-~~---------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~ 446 (607)
....+...+...+++. +|++++++|.+ .. .....++|+|+|+||+|+......
T Consensus 117 ~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~~~~piIlV~NK~Dl~~~~ev---- 192 (361)
T 2qag_A 117 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTLTLKER---- 192 (361)
T ss_dssp CTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTCS-SCEEEEEECCSSSCHHHH----
T ss_pred HHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhccCCCEEEEEECCCCCCHHHH----
Confidence 1111111111233333 25677777752 22 122357899999999999864221
Q ss_pred HHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 447 KRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
..+ ..++...+ ...+++++++||++|.| ++.|..+.+.+.
T Consensus 193 ~~~----k~~i~~~~-~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~ 232 (361)
T 2qag_A 193 ERL----KKRILDEI-EEHNIKIYHLPDAESDE-DEDFKEQTRLLK 232 (361)
T ss_dssp HHH----HHHHHHHT-TCC-CCSCCCC----------CHHHHHHHH
T ss_pred HHH----HHHHHHHH-HHCCCCEEeCCCcCCCc-chhHHHHHHHHH
Confidence 111 12222232 23468999999999999 777777666543
No 370
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.55 E-value=9.9e-15 Score=152.86 Aligned_cols=168 Identities=17% Similarity=0.199 Sum_probs=80.5
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCC------CCceeeeeEEEEeeeCCe--eEEEecCCCCccccCc----h
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTP------DDHVTRDIREGLAKLGDL--RFKVLDSAGLETEATS----G 187 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~------~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~----~ 187 (607)
.++|+|||.+|||||||+|+|++.........+ ..+++.+.....+...+. .+.+|||||+...... .
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~ 116 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 116 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------C
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHH
Confidence 368999999999999999999876432221111 111333332222333443 7899999999532110 0
Q ss_pred hHHHHHHHHHHHHhhcc-------------CEEEEEEec-CCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCc
Q 007334 188 SILDRTAGMTANVLAKT-------------QFAIFMIDV-RSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGS 253 (607)
Q Consensus 188 ~~~~~~~~~~~~~~~~a-------------d~vl~VvD~-s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~ 253 (607)
.+......+...++..+ |++++++|. .++....+..+.+.+ ..+.|+|+|+||+|+...+...
T Consensus 117 ~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l---~~~~piIlV~NK~Dl~~~~ev~ 193 (361)
T 2qag_A 117 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI---HNKVNIVPVIAKADTLTLKERE 193 (361)
T ss_dssp CTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT---CS-SCEEEEEECCSSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh---ccCCCEEEEEECCCCCCHHHHH
Confidence 11110111112334332 457777765 556676665554444 3478999999999998643221
Q ss_pred H--HHHHHHHHhcCCCCcEEeecCCCCChHHHHHHhccchH
Q 007334 254 L--AGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 254 ~--~~~~~~~~~~~~~~~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
. ......+...++ +++++||++|.| ++.+..+.+.+.
T Consensus 194 ~~k~~i~~~~~~~~i-~~~~~Sa~~~~~-~e~~~~l~~~i~ 232 (361)
T 2qag_A 194 RLKKRILDEIEEHNI-KIYHLPDAESDE-DEDFKEQTRLLK 232 (361)
T ss_dssp HHHHHHHHHTTCC-C-CSCCCC----------CHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC-CEEeCCCcCCCc-chhHHHHHHHHH
Confidence 1 122233334455 789999999998 776666655543
No 371
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.55 E-value=8.6e-15 Score=151.86 Aligned_cols=89 Identities=27% Similarity=0.287 Sum_probs=65.2
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC-----------------eEEEEEecCCCcccc
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG-----------------RTVYLVDTAGWLQRE 386 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~-----------------~~~~liDTpG~~~~~ 386 (607)
.++|++||.||||||||+|+|++.. +.++++|++|+++..+.+.+++ ..+.||||||+.+..
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~-~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 4689999999999999999999875 7788999999998777777665 479999999987652
Q ss_pred c-ccCcchhHHHHHHHHHhhccEEEEEeccch
Q 007334 387 K-EKGPASLSVMQSRKNLMRAHVVALVLDAEE 417 (607)
Q Consensus 387 ~-~~~~~~~~~~~~~~~i~~ad~~llViD~~~ 417 (607)
. ..+.. ...+.+++.+|++++|+|+++
T Consensus 81 ~~~~gl~----~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 81 SKGEGLG----NKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHGGGT----CCHHHHHHTCSEEEEEEECSC
T ss_pred cccchHH----HHHHHHHHhcCeEEEEEecCC
Confidence 1 11111 123467889999999999974
No 372
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.54 E-value=1.7e-14 Score=158.79 Aligned_cols=116 Identities=20% Similarity=0.198 Sum_probs=91.2
Q ss_pred CCEEEEecCCCCchhHHHHHhhcccee---------------eecc------CCCCceeeeeEEEEeeeCCeeEEEecCC
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREA---------------LVYN------TPDDHVTRDIREGLAKLGDLRFKVLDSA 178 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~---------------~v~~------~~~~~~T~~~~~~~~~~~~~~~~liDTp 178 (607)
..+|+|||+.++|||||..+|+-...+ .+.| ..| .|.......+.|++..++|||||
T Consensus 31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRG--ITI~s~~~~~~~~~~~iNlIDTP 108 (548)
T 3vqt_A 31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERG--ISVTTSVMQFPYRDRVVNLLDTP 108 (548)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC----------------------CTTTEEEEEETTEEEEEECCC
T ss_pred cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCC--CcEeeceEEEEECCEEEEEEeCC
Confidence 468999999999999999999722111 1111 122 44455556678899999999999
Q ss_pred CCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccC
Q 007334 179 GLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHN 249 (607)
Q Consensus 179 G~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~ 249 (607)
|+. +|...+...++-+|.+|+|+|+.+|+..+...+.+.+.+. ++|.|+++||+|....
T Consensus 109 GHv----------DF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~--~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 109 GHQ----------DFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMR--ATPVMTFVNKMDREAL 167 (548)
T ss_dssp CGG----------GCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHT--TCCEEEEEECTTSCCC
T ss_pred CcH----------HHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHh--CCceEEEEecccchhc
Confidence 999 5667778889999999999999999999998888888887 8999999999997653
No 373
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.54 E-value=3.5e-14 Score=160.12 Aligned_cols=104 Identities=26% Similarity=0.265 Sum_probs=80.0
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCcee-----------ecC------CCCceeeeEEEEEEEcCeEEEEEecCCCcccc
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVL-----------VGP------EAGLTRDSVRVHFEYQGRTVYLVDTAGWLQRE 386 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~-----------~~~------~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~ 386 (607)
..+|+++|++|+|||||+++|++..... +.+ ..|+|.......+.+.+..+.||||||+.++.
T Consensus 9 ~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f~ 88 (665)
T 2dy1_A 9 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFV 88 (665)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGH
T ss_pred CcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccchH
Confidence 4689999999999999999999542210 111 23667777777788889999999999975542
Q ss_pred cccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCC
Q 007334 387 KEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLL 437 (607)
Q Consensus 387 ~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~ 437 (607)
..+..+++.+|++++|+|++++ .....++|+++|+||+|+.
T Consensus 89 ----------~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 89 ----------GEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp ----------HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred ----------HHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh
Confidence 2355778899999999999875 2334689999999999997
No 374
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.53 E-value=4.3e-14 Score=155.55 Aligned_cols=106 Identities=26% Similarity=0.348 Sum_probs=81.7
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCce---------------------eecCCCCceeeeEEEEEEEcCeEEEEEecCCC
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRV---------------------LVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGW 382 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~---------------------~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~ 382 (607)
..+|+|+|+.++|||||..+|+..... .....-|+|.......+.|++..+.|+||||+
T Consensus 31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH 110 (548)
T 3vqt_A 31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGH 110 (548)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCG
T ss_pred cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCc
Confidence 357999999999999999999732111 12223477777777889999999999999999
Q ss_pred cccccccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCC
Q 007334 383 LQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSG 439 (607)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~ 439 (607)
.++. ..+.++++-+|++|+|+|+.++ .+.+.++|.|+++||+|....
T Consensus 111 vDF~----------~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 111 QDFS----------EDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREAL 167 (548)
T ss_dssp GGCS----------HHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCC
T ss_pred HHHH----------HHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhc
Confidence 8884 3456788899999999999987 455679999999999998754
No 375
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.53 E-value=1.1e-14 Score=138.22 Aligned_cols=118 Identities=19% Similarity=0.169 Sum_probs=74.2
Q ss_pred cCCCEEEEecCCCCchhHHHHHhhccceee--eccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHH
Q 007334 118 NLLPTVMIIGRPNVGKSALFNRLIRRREAL--VYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAG 195 (607)
Q Consensus 118 ~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~--v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~ 195 (607)
...++|+++|.+|||||||+|+|++..... ....+. ++.+. .+..+.+|||||+...... ...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~--~~~~~-------~~~~~~l~Dt~G~~~~~~~------~~~ 110 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPL--SAADY-------DGSGVTLVDFPGHVKLRYK------LSD 110 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC--------------CC-------CCTTCSEEEETTCCBSSCC------HHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCc--eeeee-------cCCeEEEEECCCCchHHHH------HHH
Confidence 446899999999999999999999876422 111222 33222 5678999999999743321 112
Q ss_pred HHHHHhhccCEEEEEEecC-CCCCHhH--HHHHHHHHh----hCCCCcEEEEecCCCcccCC
Q 007334 196 MTANVLAKTQFAIFMIDVR-SGLHPLD--LEVGKWLRK----HAPQIKPIVAMNKCESLHNG 250 (607)
Q Consensus 196 ~~~~~~~~ad~vl~VvD~s-~~~~~~~--~~~~~~l~~----~~~~~p~ilV~NK~D~~~~~ 250 (607)
.....+..+|++++|+|++ +..+... ..+..++.. ...+.|+++|+||+|+....
T Consensus 111 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 172 (193)
T 2ged_A 111 YLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 172 (193)
T ss_dssp HHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred HHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence 2233456699999999998 3322222 112222222 12478999999999998654
No 376
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.52 E-value=7e-15 Score=153.86 Aligned_cols=154 Identities=22% Similarity=0.264 Sum_probs=95.5
Q ss_pred CCCEEEEecCCCCchhHHHHHhhc------cceeeeccCCCCceee-----e------------eEE-------------
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIR------RREALVYNTPDDHVTR-----D------------IRE------------- 162 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~------~~~~~v~~~~~~~~T~-----~------------~~~------------- 162 (607)
..++|+|+|.||||||||+++|+. .+...+...|....+. + ...
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 157 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVT 157 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccchh
Confidence 357899999999999999999973 3444443333211100 0 000
Q ss_pred -------EEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCC
Q 007334 163 -------GLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQI 235 (607)
Q Consensus 163 -------~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~ 235 (607)
..+...+..+.||||||+.. . ....+..+|++++|+|.+.+..... +... ..+.
T Consensus 158 ~~t~d~i~~~~~~~~~~iiiDTpGi~~----------~---~~~~~~~aD~vl~V~d~~~~~~~~~--l~~~----~~~~ 218 (355)
T 3p32_A 158 RATRETVVLLEAAGFDVILIETVGVGQ----------S---EVAVANMVDTFVLLTLARTGDQLQG--IKKG----VLEL 218 (355)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSCSS----------H---HHHHHTTCSEEEEEEESSTTCTTTT--CCTT----SGGG
T ss_pred HHHHHHHHHHhhCCCCEEEEeCCCCCc----------H---HHHHHHhCCEEEEEECCCCCccHHH--HHHh----Hhhc
Confidence 00123567899999999762 1 1123588999999999876543321 1111 1246
Q ss_pred cEEEEecCCCcccCCcCcHHHHHHHHH----hc-----CC-CCcEEeecCCCCChHHHHHHhccchHH
Q 007334 236 KPIVAMNKCESLHNGTGSLAGAAAESL----ML-----GF-GDPIAISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 236 p~ilV~NK~D~~~~~~~~~~~~~~~~~----~~-----~~-~~~i~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
|.++|+||+|+...... ......+. .. ++ .+++++||++|.|+++|++.|.+.++.
T Consensus 219 p~ivVlNK~Dl~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 219 ADIVVVNKADGEHHKEA--RLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp CSEEEEECCCGGGHHHH--HHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCcChhHH--HHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 99999999998753211 11111111 11 11 368999999999999999999887754
No 377
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.52 E-value=3.8e-14 Score=147.03 Aligned_cols=89 Identities=27% Similarity=0.301 Sum_probs=63.9
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC-----------------eeEEEecCCCCccc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD-----------------LRFKVLDSAGLETE 183 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~-----------------~~~~liDTpG~~~~ 183 (607)
.+|+|||.||||||||+|+|++.. +.+.+.|+ +|.+...+.+.+.+ ..+.+|||||+...
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~-~~v~~~p~--tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAG-IEAANYPF--CTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG 79 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC-------CC--CCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCC--ceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccc
Confidence 589999999999999999999976 55677777 78887777666655 46999999999843
Q ss_pred cCchhHHHHHHHHHHHHhhccCEEEEEEecCC
Q 007334 184 ATSGSILDRTAGMTANVLAKTQFAIFMIDVRS 215 (607)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~ 215 (607)
...+.. .....+.+++.+|++++|+|+++
T Consensus 80 a~~~~g---l~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 80 ASKGEG---LGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHHGG---GTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccccch---HHHHHHHHHHhcCeEEEEEecCC
Confidence 211100 11233567899999999999986
No 378
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.51 E-value=5.4e-14 Score=146.85 Aligned_cols=89 Identities=31% Similarity=0.309 Sum_probs=68.0
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEE---------------------cCeEEEEEecCCCc
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEY---------------------QGRTVYLVDTAGWL 383 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~---------------------~~~~~~liDTpG~~ 383 (607)
++|++||.||||||||+|+|++.. ..+.++|++|.++..+...+ .+..+.||||||+.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~-~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~ 80 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN-ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV 80 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH-TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence 579999999999999999999863 56788999998877666543 24579999999997
Q ss_pred ccccccCcchhHHHHHHHHHhhccEEEEEeccch
Q 007334 384 QREKEKGPASLSVMQSRKNLMRAHVVALVLDAEE 417 (607)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~ 417 (607)
+.... .+.+. ...+.+++.||++++|+|+++
T Consensus 81 ~~a~~--~~~lg-~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 81 KGAHK--GEGLG-NQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCS--SSCTT-HHHHHHHHTCSEEEEEEECCC
T ss_pred ccccc--cchHH-HHHHHHHHhCCEEEEEEECCC
Confidence 65211 11121 344567899999999999974
No 379
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.50 E-value=6.7e-14 Score=145.56 Aligned_cols=151 Identities=22% Similarity=0.192 Sum_probs=93.0
Q ss_pred CceEEEEcCCCCchhHHHHHhhc------CCceeecCCCCceee--------------------eEEEE-----------
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQ------EDRVLVGPEAGLTRD--------------------SVRVH----------- 366 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~------~~~~~~~~~~gtT~~--------------------~~~~~----------- 366 (607)
...|+++|+||+|||||+|.|++ .....+...+++|.. ++...
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~~~ 135 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGASQ 135 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchhHH
Confidence 46799999999999999999963 333444444444321 00000
Q ss_pred --------EEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchhhH------HhcCCcEEEEEe
Q 007334 367 --------FEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEVRA------VEEGRGLVVIVN 432 (607)
Q Consensus 367 --------~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~~~------~~~~~p~ivv~N 432 (607)
+.+.+.++.||||||+.+.. ......+|++++|+|++.+.. ...++|.++|+|
T Consensus 136 ~~~~~~~~~~~~~~~i~liDTpG~~~~~-------------~~~~~~aD~vl~Vvd~~~~~~~~~l~~~~~~~p~ivv~N 202 (341)
T 2p67_A 136 RARELMLLCEAAGYDVVIVETVGVGQSE-------------TEVARMVDCFISLQIAGGGDDLQGIKKGLMEVADLIVIN 202 (341)
T ss_dssp HHHHHHHHHHHTTCSEEEEEEECCTTHH-------------HHHHTTCSEEEEEECC------CCCCHHHHHHCSEEEEC
T ss_pred HHHHHHHHhhccCCCEEEEeCCCccchH-------------HHHHHhCCEEEEEEeCCccHHHHHHHHhhhcccCEEEEE
Confidence 01346789999999976431 013468999999999976511 112578999999
Q ss_pred CccCCCCcCchHHHHHHHHhcHHHHHhhCC---CCCCCCEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 433 KMDLLSGRQNSALYKRVKEAVPQEIQTVIP---QVTGIPVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 433 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
|+|+..... +....+.+...+. .+. ..+..+++++||++|.|++++++.|.+.+.
T Consensus 203 K~Dl~~~~~----~~~~~~~l~~~l~-~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 203 KDDGDNHTN----VAIARHMYESALH-ILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp CCCTTCHHH----HHHHHHHHHHHHH-HSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred CCCCCChHH----HHHHHHHHHHHHH-hccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 999975311 1111111211111 111 112457899999999999999999987654
No 380
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.49 E-value=7.6e-15 Score=149.24 Aligned_cols=145 Identities=18% Similarity=0.261 Sum_probs=95.2
Q ss_pred HhhccCEEEEEEecCCCCCHhHHHHHHHHHhh-CCCCcEEEEecCCCcccCCc--CcHHHHHHHHHhcCCCCcEEeecCC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH-APQIKPIVAMNKCESLHNGT--GSLAGAAAESLMLGFGDPIAISAET 276 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~--~~~~~~~~~~~~~~~~~~i~iSA~~ 276 (607)
.+.++|.+++|+|+..|....+ .+.++|... ..++|.++|+||+|+.+... .........+...|+ +++.+||.+
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~-~v~~~sa~~ 160 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGY-DVYLTSSKD 160 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHH-HHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTC-CEEECCHHH
T ss_pred HHHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCC-eEEEEecCC
Confidence 5789999999999998777666 555666432 34789999999999987521 011223334446788 899999999
Q ss_pred CCChHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhcCCceeecCCC
Q 007334 277 GLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEA 356 (607)
Q Consensus 277 g~gi~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~ 356 (607)
|.|+++|++... .-.++++|++|||||||+|.|+|.....++...
T Consensus 161 ~~g~~~L~~~~~-----------------------------------G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~ 205 (307)
T 1t9h_A 161 QDSLADIIPHFQ-----------------------------------DKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 205 (307)
T ss_dssp HTTCTTTGGGGT-----------------------------------TSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred CCCHHHHHhhcC-----------------------------------CCEEEEECCCCCCHHHHHHHhccccccccccee
Confidence 999887654321 126899999999999999999987554444433
Q ss_pred -------CceeeeEEEEEEEcCeEEEEEecCCCccc
Q 007334 357 -------GLTRDSVRVHFEYQGRTVYLVDTAGWLQR 385 (607)
Q Consensus 357 -------gtT~~~~~~~~~~~~~~~~liDTpG~~~~ 385 (607)
++|++.. .+... ...++||||+..+
T Consensus 206 ~~~~~G~~tt~~~~--~~~~~--~g~v~dtpg~~~~ 237 (307)
T 1t9h_A 206 EHLGRGKHTTRHVE--LIHTS--GGLVADTPGFSSL 237 (307)
T ss_dssp ---------CCCCC--EEEET--TEEEESSCSCSSC
T ss_pred eecCCCcccccHHH--HhhcC--CEEEecCCCcccc
Confidence 3444432 12222 2468999998664
No 381
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.48 E-value=2.3e-14 Score=160.90 Aligned_cols=162 Identities=16% Similarity=0.158 Sum_probs=119.5
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceee-----e------ccCCC----CceeeeeEEEEeeeCCeeEEEecCCCCcccc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREAL-----V------YNTPD----DHVTRDIREGLAKLGDLRFKVLDSAGLETEA 184 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~-----v------~~~~~----~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~ 184 (607)
+.+|+|+|+.++|||||..+|+-....+ + .|... .+.|.......+.|++..++|+||||+.
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~--- 78 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHM--- 78 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSS---
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcH---
Confidence 5689999999999999999997332111 1 11100 0144444555667889999999999999
Q ss_pred CchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHH-------
Q 007334 185 TSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGA------- 257 (607)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~------- 257 (607)
+|...+...++-+|++|+|+|+.+|+..+...+.+.+.+. ++|.|+++||+|....+.......
T Consensus 79 -------DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~--~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~ 149 (638)
T 3j25_A 79 -------DFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKM--GIPTIFFINKIDQNGIDLSTVYQDIKEKLSA 149 (638)
T ss_dssp -------STHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHH--TCSCEECCEECCSSSCCSHHHHHHHHHTTCC
T ss_pred -------HHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHc--CCCeEEEEeccccccCCHHHHHHHHHHHhCC
Confidence 5677788899999999999999999999998888888887 889999999999765331100000
Q ss_pred ------------------------------------------------------HHHHHhcCCCCcEEeecCCCCChHHH
Q 007334 258 ------------------------------------------------------AAESLMLGFGDPIAISAETGLGMTEL 283 (607)
Q Consensus 258 ------------------------------------------------------~~~~~~~~~~~~i~iSA~~g~gi~eL 283 (607)
...+....+.+++..||++|.|++.|
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~L 229 (638)
T 3j25_A 150 EIVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNL 229 (638)
T ss_dssp CCCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHH
T ss_pred CccccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhH
Confidence 00011123346788999999999999
Q ss_pred HHHhccchHH
Q 007334 284 YEALRPSVED 293 (607)
Q Consensus 284 ~~~i~~~l~~ 293 (607)
++.|.+.++.
T Consensus 230 Ld~i~~~~p~ 239 (638)
T 3j25_A 230 IEVITNKFYS 239 (638)
T ss_dssp HHHHHHSCCC
T ss_pred hhhhhccccC
Confidence 9999987765
No 382
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.48 E-value=8e-14 Score=153.60 Aligned_cols=127 Identities=17% Similarity=0.227 Sum_probs=86.1
Q ss_pred cCCCEEEEecCCCCchhHHHHHhhcccee--eeccCCCCceeeeeEEEEe------------------------------
Q 007334 118 NLLPTVMIIGRPNVGKSALFNRLIRRREA--LVYNTPDDHVTRDIREGLA------------------------------ 165 (607)
Q Consensus 118 ~~~~~V~ivG~~nvGKSSL~n~L~~~~~~--~v~~~~~~~~T~~~~~~~~------------------------------ 165 (607)
...++|+|+|.+|||||||+|+|++.+.. .++..+. |++.......
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~--T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~ 140 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPT--TDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFL 140 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCC--CCSEEEEECCSSSEEECCC------------------CCC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCc--cceEEEEEECCcccccCCceeeecCcccHHHHhhhccccc
Confidence 34689999999999999999999998764 4555554 3332111000
Q ss_pred ------eeCC---eeEEEecCCCCccccCchhHHH--HHHHHHHHHhhccCEEEEEEecCC-CCCHhHHHHHHHHHhhCC
Q 007334 166 ------KLGD---LRFKVLDSAGLETEATSGSILD--RTAGMTANVLAKTQFAIFMIDVRS-GLHPLDLEVGKWLRKHAP 233 (607)
Q Consensus 166 ------~~~~---~~~~liDTpG~~~~~~~~~~~~--~~~~~~~~~~~~ad~vl~VvD~s~-~~~~~~~~~~~~l~~~~~ 233 (607)
.+.+ ..+.||||||+...... .... .+...+..++..+|++|+|+|+++ +....+..+.+.+...
T Consensus 141 ~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~-~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~-- 217 (550)
T 2qpt_A 141 NRFMCAQLPNQVLESISIIDTPGILSGAKQ-RVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH-- 217 (550)
T ss_dssp TTEEEEECCCHHHHHCEEEECCCBCC--------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC--
T ss_pred ccceEEeccccccCCEEEEECcCCCCcchh-HHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc--
Confidence 0000 36899999999842211 0000 144566778899999999999988 4666666666666544
Q ss_pred CCcEEEEecCCCcccC
Q 007334 234 QIKPIVAMNKCESLHN 249 (607)
Q Consensus 234 ~~p~ilV~NK~D~~~~ 249 (607)
+.|+++|+||+|+...
T Consensus 218 ~~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 218 EDKIRVVLNKADMVET 233 (550)
T ss_dssp GGGEEEEEECGGGSCH
T ss_pred CCCEEEEEECCCccCH
Confidence 6799999999999864
No 383
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.47 E-value=4.4e-14 Score=146.95 Aligned_cols=150 Identities=16% Similarity=0.170 Sum_probs=92.3
Q ss_pred CCEEEEecCCCCchhHHHHHhhc------cceeeeccCCCCceeee--------------------eEEE----------
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIR------RREALVYNTPDDHVTRD--------------------IREG---------- 163 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~------~~~~~v~~~~~~~~T~~--------------------~~~~---------- 163 (607)
...|+++|++|+|||||+|.|++ .+.+++...++ +|.. +...
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~--~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~ 133 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS--SPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA 133 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-----------------CTTTTCTTEEEEEECC-----CH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCC--cCCCCcceecccchHHhhccCCCceeecCccccccchh
Confidence 46899999999999999999973 44555555444 2210 0000
Q ss_pred ---------EeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCC
Q 007334 164 ---------LAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQ 234 (607)
Q Consensus 164 ---------~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~ 234 (607)
...+.+..+.||||||+... .. .....+|++++|+|++.+..... +.... . +
T Consensus 134 ~~~~~~~~~~~~~~~~~i~liDTpG~~~~----------~~---~~~~~aD~vl~Vvd~~~~~~~~~--l~~~~--~--~ 194 (341)
T 2p67_A 134 SQRARELMLLCEAAGYDVVIVETVGVGQS----------ET---EVARMVDCFISLQIAGGGDDLQG--IKKGL--M--E 194 (341)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEECCTTH----------HH---HHHTTCSEEEEEECC------CC--CCHHH--H--H
T ss_pred HHHHHHHHHHhhccCCCEEEEeCCCccch----------HH---HHHHhCCEEEEEEeCCccHHHHH--HHHhh--h--c
Confidence 00145789999999998721 11 13589999999999976532111 10111 1 3
Q ss_pred CcEEEEecCCCcccCCcCcHHHHHHHHH----hcC------CCCcEEeecCCCCChHHHHHHhccchH
Q 007334 235 IKPIVAMNKCESLHNGTGSLAGAAAESL----MLG------FGDPIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 235 ~p~ilV~NK~D~~~~~~~~~~~~~~~~~----~~~------~~~~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
.|.++|+||+|+..... .......+. .++ ..+++++||++|.|+++|++.|.+.+.
T Consensus 195 ~p~ivv~NK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 195 VADLIVINKDDGDNHTN--VAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HCSEEEECCCCTTCHHH--HHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred ccCEEEEECCCCCChHH--HHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 58899999999875311 111111111 122 235689999999999999999987664
No 384
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.47 E-value=7.5e-14 Score=135.66 Aligned_cols=155 Identities=17% Similarity=0.237 Sum_probs=97.4
Q ss_pred cCCCEEEEecCCCCchhHHHHHhhcc-----ceeeeccCCCCceeeee--------EEEEe------------------e
Q 007334 118 NLLPTVMIIGRPNVGKSALFNRLIRR-----REALVYNTPDDHVTRDI--------REGLA------------------K 166 (607)
Q Consensus 118 ~~~~~V~ivG~~nvGKSSL~n~L~~~-----~~~~v~~~~~~~~T~~~--------~~~~~------------------~ 166 (607)
...++|+|+|++|||||||+|+|++. +.+.+...++ ++.|. ....+ .
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~--~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVV--SKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKK 105 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCC--CHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGG
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCC--CchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHh
Confidence 34689999999999999999999875 2344444443 22110 00111 1
Q ss_pred eCCeeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCc
Q 007334 167 LGDLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCES 246 (607)
Q Consensus 167 ~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~ 246 (607)
..+..+.+|||+|+.. .|. . +-..++.+++|+|++.+.... ..+.... +.|.++|+||+|+
T Consensus 106 ~~~~d~iiidt~G~~~-~~~------~------~~~~~~~~i~vvd~~~~~~~~----~~~~~~~--~~~~iiv~NK~Dl 166 (221)
T 2wsm_A 106 FSDCDLLLIENVGNLI-CPV------D------FDLGENYRVVMVSVTEGDDVV----EKHPEIF--RVADLIVINKVAL 166 (221)
T ss_dssp GTTCSEEEEEEEEBSS-GGG------G------CCCSCSEEEEEEEGGGCTTHH----HHCHHHH--HTCSEEEEECGGG
T ss_pred cCCCCEEEEeCCCCCC-CCc------h------hccccCcEEEEEeCCCcchhh----hhhhhhh--hcCCEEEEecccC
Confidence 2345789999999631 111 0 012467899999998764322 1222222 5789999999998
Q ss_pred ccCCcCcHHHHHHHHHhcC-CCCcEEeecCCCCChHHHHHHhccchHH
Q 007334 247 LHNGTGSLAGAAAESLMLG-FGDPIAISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~-~~~~i~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
..............+...+ ..+++++||++|.|++++++.|.+.+..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 167 AEAVGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp HHHHTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred CcchhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 7532122333333343333 2367999999999999999999876643
No 385
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.44 E-value=3.7e-14 Score=159.23 Aligned_cols=105 Identities=19% Similarity=0.296 Sum_probs=83.1
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCce-----------eecCC------CCceeeeEEEEEEEcCeEEEEEecCCCccccc
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRV-----------LVGPE------AGLTRDSVRVHFEYQGRTVYLVDTAGWLQREK 387 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~-----------~~~~~------~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~ 387 (607)
.+|+|+|+.++|||||..+|+..... .+.++ -|+|.......+.|++..++|+||||+.++.
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~- 81 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL- 81 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH-
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH-
Confidence 46899999999999999999732111 11121 1777777777788999999999999998873
Q ss_pred ccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCC
Q 007334 388 EKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSG 439 (607)
Q Consensus 388 ~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~ 439 (607)
..+.++++-+|++|+|+|+.++ .+...++|.|+++||+|....
T Consensus 82 ---------~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a 134 (638)
T 3j25_A 82 ---------AEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGI 134 (638)
T ss_dssp ---------HHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSC
T ss_pred ---------HHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccC
Confidence 3456788899999999999987 445679999999999998654
No 386
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.44 E-value=1.9e-13 Score=142.68 Aligned_cols=89 Identities=31% Similarity=0.343 Sum_probs=64.8
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee---------------------CCeeEEEecCCC
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL---------------------GDLRFKVLDSAG 179 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~---------------------~~~~~~liDTpG 179 (607)
++|+|||.||||||||+|+|++.. ..+.+.|+ +|.+...+.... .+..+.+|||||
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~-~~v~~~p~--~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpG 78 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN-ALAANYPF--ATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAG 78 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH-TTCSSCCG--GGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CcccCCCC--ceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCC
Confidence 479999999999999999999875 34556666 676666555443 245799999999
Q ss_pred CccccCchhHHHHHHHHHHHHhhccCEEEEEEecCC
Q 007334 180 LETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRS 215 (607)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~ 215 (607)
+......+.. .....+.+++.+|++++|+|+++
T Consensus 79 l~~~a~~~~~---lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 79 LVKGAHKGEG---LGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCCCSSSC---TTHHHHHHHHTCSEEEEEEECCC
T ss_pred ccccccccch---HHHHHHHHHHhCCEEEEEEECCC
Confidence 9854332211 11234567899999999999986
No 387
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.43 E-value=9.2e-14 Score=135.03 Aligned_cols=148 Identities=11% Similarity=0.126 Sum_probs=91.7
Q ss_pred CceEEEEcCCCCchhHHHHHhhcC-----CceeecCCCCceeee--------EEEEE------------------EEcCe
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQE-----DRVLVGPEAGLTRDS--------VRVHF------------------EYQGR 372 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~-----~~~~~~~~~gtT~~~--------~~~~~------------------~~~~~ 372 (607)
..+|+++|.+|||||||+|+|++. ....+...++++.|. ....+ ...+.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSDC 109 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTTC
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCCC
Confidence 468999999999999999999864 123334444433221 00011 11245
Q ss_pred EEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh------hHHhcCCcEEEEEeCccCCCCcCchHHH
Q 007334 373 TVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV------RAVEEGRGLVVIVNKMDLLSGRQNSALY 446 (607)
Q Consensus 373 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~ 446 (607)
.+.+|||||..... ..+ -..++.+++|+|++.+ .....++|.++|+||+|+.+.... ..
T Consensus 110 d~iiidt~G~~~~~-----~~~--------~~~~~~~i~vvd~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~--~~ 174 (221)
T 2wsm_A 110 DLLLIENVGNLICP-----VDF--------DLGENYRVVMVSVTEGDDVVEKHPEIFRVADLIVINKVALAEAVGA--DV 174 (221)
T ss_dssp SEEEEEEEEBSSGG-----GGC--------CCSCSEEEEEEEGGGCTTHHHHCHHHHHTCSEEEEECGGGHHHHTC--CH
T ss_pred CEEEEeCCCCCCCC-----chh--------ccccCcEEEEEeCCCcchhhhhhhhhhhcCCEEEEecccCCcchhh--HH
Confidence 78899999952211 000 0146889999999875 112246899999999998642100 11
Q ss_pred HHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 447 KRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
+.+.+ .+.+. ....+++++||++|.|++++++.+.+.+..
T Consensus 175 ~~~~~----~~~~~---~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 175 EKMKA----DAKLI---NPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp HHHHH----HHHHH---CTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred HHHHH----HHHHh---CCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 22211 12211 124689999999999999999999876543
No 388
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.43 E-value=3.1e-13 Score=134.89 Aligned_cols=167 Identities=16% Similarity=0.066 Sum_probs=102.4
Q ss_pred CCEEEEecCCCCchhHHHHHhh-----ccceeeeccCCCCcee--------------eeeEEEEe---------------
Q 007334 120 LPTVMIIGRPNVGKSALFNRLI-----RRREALVYNTPDDHVT--------------RDIREGLA--------------- 165 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~-----~~~~~~v~~~~~~~~T--------------~~~~~~~~--------------- 165 (607)
.+.++++|.+|||||||++.|. +.+..++...++...+ ++......
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRLME 93 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHHhh
Confidence 4689999999999999999998 7777776655431111 00000000
Q ss_pred ----------e-eCCeeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHH-HH----HHHH
Q 007334 166 ----------K-LGDLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLE-VG----KWLR 229 (607)
Q Consensus 166 ----------~-~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~-~~----~~l~ 229 (607)
. ..+..+.||||||+....... ........++.. +++++|+|++......+.. .. ....
T Consensus 94 ~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~~~----~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~ 168 (262)
T 1yrb_A 94 KFNEYLNKILRLEKENDYVLIDTPGQMETFLFH----EFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDL 168 (262)
T ss_dssp THHHHHHHHHHHHHHCSEEEEECCSSHHHHHHS----HHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhcCCEEEEeCCCccchhhhh----hhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhc
Confidence 0 012479999999997321100 111222344566 8999999998776666532 11 1122
Q ss_pred hhCCCCcEEEEecCCCcccCCcCc-HHHH-------HHH------------------HHhcCCC-CcEEeecCCCCChHH
Q 007334 230 KHAPQIKPIVAMNKCESLHNGTGS-LAGA-------AAE------------------SLMLGFG-DPIAISAETGLGMTE 282 (607)
Q Consensus 230 ~~~~~~p~ilV~NK~D~~~~~~~~-~~~~-------~~~------------------~~~~~~~-~~i~iSA~~g~gi~e 282 (607)
.. +.|+++|+||+|+....... .... ... +...+.. +++++||++|+|+++
T Consensus 169 ~~--~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~ 246 (262)
T 1yrb_A 169 RL--GATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFED 246 (262)
T ss_dssp HH--TSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHH
T ss_pred cc--CCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHH
Confidence 22 68999999999987542110 0000 000 1223332 789999999999999
Q ss_pred HHHHhccchHH
Q 007334 283 LYEALRPSVED 293 (607)
Q Consensus 283 L~~~i~~~l~~ 293 (607)
|+++|.+.++.
T Consensus 247 l~~~i~~~~~~ 257 (262)
T 1yrb_A 247 LETLAYEHYCT 257 (262)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcc
Confidence 99999877653
No 389
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.42 E-value=1.8e-13 Score=158.09 Aligned_cols=104 Identities=24% Similarity=0.331 Sum_probs=77.2
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeec---------------CCCCceeeeEEEEEEEc----------------Ce
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVG---------------PEAGLTRDSVRVHFEYQ----------------GR 372 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~---------------~~~gtT~~~~~~~~~~~----------------~~ 372 (607)
..+|+|+|++|+|||||+++|++....+.. ...|+|.......+.|. +.
T Consensus 19 ~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 98 (842)
T 1n0u_A 19 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSF 98 (842)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEE
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCc
Confidence 368999999999999999999975322221 13455555444455554 56
Q ss_pred EEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCC
Q 007334 373 TVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLL 437 (607)
Q Consensus 373 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~ 437 (607)
.+.||||||+.++. ..+..+++.+|++|+|+|++++ .....++|+|+|+||+|+.
T Consensus 99 ~i~liDTPG~~df~----------~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 99 LINLIDSPGHVDFS----------SEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEECCCCCCSSC----------HHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred eEEEEECcCchhhH----------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcc
Confidence 88999999987653 2345778899999999999986 2345689999999999986
No 390
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.38 E-value=1.5e-12 Score=147.98 Aligned_cols=119 Identities=18% Similarity=0.111 Sum_probs=87.4
Q ss_pred cCCCEEEEecCCCCchhHHHHHhhcccee-----eec------cCCC----CceeeeeEEEEeeeC-------CeeEEEe
Q 007334 118 NLLPTVMIIGRPNVGKSALFNRLIRRREA-----LVY------NTPD----DHVTRDIREGLAKLG-------DLRFKVL 175 (607)
Q Consensus 118 ~~~~~V~ivG~~nvGKSSL~n~L~~~~~~-----~v~------~~~~----~~~T~~~~~~~~~~~-------~~~~~li 175 (607)
+.+.+|+|||+.++|||||..+|+-.... .+. |... .+.|.......+.|. ++.++||
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 44679999999999999999999733211 011 1000 112332333333342 5789999
Q ss_pred cCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCccc
Q 007334 176 DSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLH 248 (607)
Q Consensus 176 DTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~ 248 (607)
||||+. +|...+...++-+|++|+|+|+.+|+..+...+.+.+.+. ++|.|+|+||+|...
T Consensus 91 DTPGHv----------DF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~--~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 91 DTPGHV----------DFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY--GVPRIVYVNKMDRQG 151 (709)
T ss_dssp CCCSCT----------TCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH--TCCEEEEEECSSSTT
T ss_pred eCCCCc----------ccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc--CCCeEEEEccccccC
Confidence 999999 5677788899999999999999999999998888888877 899999999999754
No 391
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.38 E-value=9.6e-13 Score=139.57 Aligned_cols=166 Identities=19% Similarity=0.281 Sum_probs=79.3
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCC-----Cceee-eeEEEEeeeCC--eeEEEecCCCCccccCch----
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPD-----DHVTR-DIREGLAKLGD--LRFKVLDSAGLETEATSG---- 187 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~-----~~~T~-~~~~~~~~~~~--~~~~liDTpG~~~~~~~~---- 187 (607)
.++|+|||.+|||||||+|+|+|......+ ..+ ..++. +.........+ ..+.+|||+|+.......
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~-~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~ 109 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPE-YPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 109 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCCCCCC-CCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCCCCCC-CCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence 367999999999999999999987542111 100 00111 11111111122 368999999997432110
Q ss_pred hHHHHHHHHHHHH-----------hhc--cCEEEEEEecC-CCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCc
Q 007334 188 SILDRTAGMTANV-----------LAK--TQFAIFMIDVR-SGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGS 253 (607)
Q Consensus 188 ~~~~~~~~~~~~~-----------~~~--ad~vl~VvD~s-~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~ 253 (607)
.+..........+ +.+ +|++|++++.+ +++...+..+++.|. .+.|+|+|+||+|+.......
T Consensus 110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dll~~~ev~ 186 (418)
T 2qag_C 110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLTPEECQ 186 (418)
T ss_dssp HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEEESTTSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEEEcccCccHHHHH
Confidence 1110000111112 223 44677777765 678888765655554 378999999999998643321
Q ss_pred H--HHHHHHHHhcCCCCcEEeecCCCCChHHHHHHhccc
Q 007334 254 L--AGAAAESLMLGFGDPIAISAETGLGMTELYEALRPS 290 (607)
Q Consensus 254 ~--~~~~~~~~~~~~~~~i~iSA~~g~gi~eL~~~i~~~ 290 (607)
. ......+...+. +++++||.++.++++++..+.+.
T Consensus 187 ~~k~~i~~~~~~~~i-~~~~~sa~~~~~v~~~~~~l~~~ 224 (418)
T 2qag_C 187 QFKKQIMKEIQEHKI-KIYEFPETDDEEENKLVKKIKDR 224 (418)
T ss_dssp HHHHHHHHHHHHHTC-CCCCCC-----------------
T ss_pred HHHHHHHHHHHHcCC-eEEeCCCCCCcCHHHHHHHHHhh
Confidence 1 223344455566 78999999999998876665543
No 392
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.38 E-value=1.1e-12 Score=133.71 Aligned_cols=168 Identities=16% Similarity=0.195 Sum_probs=82.3
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCC------CCceeeeeEEEEeeeC--CeeEEEecCCCCccccC----ch
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTP------DDHVTRDIREGLAKLG--DLRFKVLDSAGLETEAT----SG 187 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~------~~~~T~~~~~~~~~~~--~~~~~liDTpG~~~~~~----~~ 187 (607)
.++|+|||.+|||||||+|+|++......+..+ ..++..+......... ...+.+|||+|+..... -.
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~ 97 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 97 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CT
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHH
Confidence 468999999999999999999875321111111 0001111111111112 35789999999942210 01
Q ss_pred hHHHHHHHHHHHHhhc-------------cCEEEEEEecCC-CCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCc
Q 007334 188 SILDRTAGMTANVLAK-------------TQFAIFMIDVRS-GLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGS 253 (607)
Q Consensus 188 ~~~~~~~~~~~~~~~~-------------ad~vl~VvD~s~-~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~ 253 (607)
.+..........++.. +++++++++.+. ++...+.++ ++....+.|+++|+||+|+...++..
T Consensus 98 ~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~---l~~l~~~~~iilV~~K~Dl~~~~e~~ 174 (301)
T 2qnr_A 98 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAF---MKAIHNKVNIVPVIAKADTLTLKERE 174 (301)
T ss_dssp THHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHH---HHHHTTTSCEEEEECCGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHH---HHHHHhcCCEEEEEEeCCCCCHHHHH
Confidence 1111111111123322 345677776544 477776444 44443467999999999998643211
Q ss_pred --HHHHHHHHHhcCCCCcEEeecCCCCChHHHHHHhccchH
Q 007334 254 --LAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 254 --~~~~~~~~~~~~~~~~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
.+.....+...+. +++++||++| |++++++.+.+.+.
T Consensus 175 ~~~~~~~~~~~~~~~-~~~e~Sa~~~-~v~e~f~~l~~~i~ 213 (301)
T 2qnr_A 175 RLKKRILDEIEEHNI-KIYHLPDAES-DEDEDFKEQTRLLK 213 (301)
T ss_dssp HHHHHHHHHHHHTTC-CCCCCC----------CHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC-eEEecCCccc-cccHHHHHHHHHhh
Confidence 1233445566676 7899999999 99999998876654
No 393
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.36 E-value=6e-12 Score=138.60 Aligned_cols=118 Identities=20% Similarity=0.295 Sum_probs=77.8
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCce--eecCCCCceeeeEEEE----------------------------------
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRV--LVGPEAGLTRDSVRVH---------------------------------- 366 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~--~~~~~~gtT~~~~~~~---------------------------------- 366 (607)
..++|+|+|.+|||||||+|+|++.... .+++.|+|++......
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~ 143 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF 143 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence 3578999999999999999999998654 5777887765321110
Q ss_pred --EEEcC---eEEEEEecCCCcccccccCcchh-HHHHHHHHHhhccEEEEEeccchh-----------hHHhcCCcEEE
Q 007334 367 --FEYQG---RTVYLVDTAGWLQREKEKGPASL-SVMQSRKNLMRAHVVALVLDAEEV-----------RAVEEGRGLVV 429 (607)
Q Consensus 367 --~~~~~---~~~~liDTpG~~~~~~~~~~~~~-~~~~~~~~i~~ad~~llViD~~~~-----------~~~~~~~p~iv 429 (607)
+.+.+ ..+.||||||+.+.........+ ....+..++..+|++|+|+|++.. .....+.|+++
T Consensus 144 ~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvil 223 (550)
T 2qpt_A 144 MCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRV 223 (550)
T ss_dssp EEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEEE
T ss_pred eEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEEE
Confidence 00000 36889999998753111101111 113345677899999999999762 11123579999
Q ss_pred EEeCccCCCCc
Q 007334 430 IVNKMDLLSGR 440 (607)
Q Consensus 430 v~NK~Dl~~~~ 440 (607)
|+||+|+....
T Consensus 224 VlNK~Dl~~~~ 234 (550)
T 2qpt_A 224 VLNKADMVETQ 234 (550)
T ss_dssp EEECGGGSCHH
T ss_pred EEECCCccCHH
Confidence 99999998653
No 394
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.35 E-value=7.3e-13 Score=152.97 Aligned_cols=117 Identities=20% Similarity=0.220 Sum_probs=84.4
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCC-------------CceeeeeEEEEeeeC----------------Ce
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPD-------------DHVTRDIREGLAKLG----------------DL 170 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~-------------~~~T~~~~~~~~~~~----------------~~ 170 (607)
.++|+|+|++|||||||+|+|+.....+....++ ...|.......+.+. +.
T Consensus 19 ~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 98 (842)
T 1n0u_A 19 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSF 98 (842)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEE
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCc
Confidence 5789999999999999999999764322221111 002322222223332 67
Q ss_pred eEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCccc
Q 007334 171 RFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLH 248 (607)
Q Consensus 171 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~ 248 (607)
.++||||||+. ++...+..+++.+|++|+|+|++++.+.++..+...+... +.|+++|+||+|+..
T Consensus 99 ~i~liDTPG~~----------df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~--~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 99 LINLIDSPGHV----------DFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGE--RIKPVVVINKVDRAL 164 (842)
T ss_dssp EEEEECCCCCC----------SSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHT--TCEEEEEEECHHHHH
T ss_pred eEEEEECcCch----------hhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc--CCCeEEEEECCCcch
Confidence 89999999998 3445567788999999999999999998887665555544 789999999999874
No 395
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.35 E-value=2.8e-13 Score=140.36 Aligned_cols=154 Identities=21% Similarity=0.282 Sum_probs=91.3
Q ss_pred CCEEEEecCCCCchhHHHHHhhc------cceeeeccCCCCc-----------------------------------eee
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIR------RREALVYNTPDDH-----------------------------------VTR 158 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~------~~~~~v~~~~~~~-----------------------------------~T~ 158 (607)
...|+|+|++|||||||+|.|++ .+..+....+... +|+
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~tr 134 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAA 134 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccchHH
Confidence 35799999999999999999983 4444444333200 000
Q ss_pred eeEEE--EeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCc
Q 007334 159 DIREG--LAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIK 236 (607)
Q Consensus 159 ~~~~~--~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p 236 (607)
+.... .....+..+.|+||||+.... . .....+|++++|+|++.+.... .+...+. ..+
T Consensus 135 ~~~e~~~~~~~~~~~~iliDT~Gi~~~~--------~-----~v~~~~d~vl~v~d~~~~~~~~--~i~~~i~----~~~ 195 (337)
T 2qm8_A 135 KTRETMLLCEAAGFDVILVETVGVGQSE--------T-----AVADLTDFFLVLMLPGAGDELQ--GIKKGIF----ELA 195 (337)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECSSSSCH--------H-----HHHTTSSEEEEEECSCC--------CCTTHH----HHC
T ss_pred HHHHHHHHHhcCCCCEEEEECCCCCcch--------h-----hHHhhCCEEEEEEcCCCcccHH--HHHHHHh----ccc
Confidence 00000 012357899999999997321 0 1247899999999986542211 1111111 236
Q ss_pred EEEEecCCCcccCCcCcHH--HHHHHHHh-cC------CCCcEEeecCCCCChHHHHHHhccchH
Q 007334 237 PIVAMNKCESLHNGTGSLA--GAAAESLM-LG------FGDPIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 237 ~ilV~NK~D~~~~~~~~~~--~~~~~~~~-~~------~~~~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
.++|+||+|+......... ........ .. ..+++.+||++|.|+++|++.|.+..+
T Consensus 196 ~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 196 DMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp SEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred cEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 6888899997542111100 11111111 11 246799999999999999999987664
No 396
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.34 E-value=2e-12 Score=133.84 Aligned_cols=145 Identities=23% Similarity=0.297 Sum_probs=91.3
Q ss_pred HhhccCEEEEEEecCCCCCHhHHHHHHHHHhh-CCCCcEEEEecCCCcccCCcC-cHHHHHHHHHhcCCCCcEEeecCCC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH-APQIKPIVAMNKCESLHNGTG-SLAGAAAESLMLGFGDPIAISAETG 277 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~-~~~~~~~~~~~~~~~~~i~iSA~~g 277 (607)
.+.++|.+++| |+..|..... .+.++|... ..++|+++|+||+|+.+.... ........+...|+ +++.+||.+|
T Consensus 127 i~anvD~v~iv-~a~~P~~~~~-~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~-~v~~~Sa~~~ 203 (358)
T 2rcn_A 127 IAANIDQIVIV-SAILPELSLN-IIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGY-RVLMVSSHTQ 203 (358)
T ss_dssp EEECCCEEEEE-EESTTTCCHH-HHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTC-CEEECBTTTT
T ss_pred HHhcCCEEEEE-EeCCCCCCHH-HHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCC-cEEEEecCCC
Confidence 36789999976 5555543333 345555321 127899999999999864210 02223455667888 7999999999
Q ss_pred CChHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhcCCc-eeecCCC
Q 007334 278 LGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDR-VLVGPEA 356 (607)
Q Consensus 278 ~gi~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~~~~-~~~~~~~ 356 (607)
.|+++|...+. .-.++++|++|||||||+|.|+|... ..++...
T Consensus 204 ~gl~~L~~~~~-----------------------------------G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~ 248 (358)
T 2rcn_A 204 DGLKPLEEALT-----------------------------------GRISIFAGQSGVGKSSLLNALLGLQNEILTNDVS 248 (358)
T ss_dssp BTHHHHHHHHT-----------------------------------TSEEEEECCTTSSHHHHHHHHHCCSSCCCCC---
T ss_pred cCHHHHHHhcC-----------------------------------CCEEEEECCCCccHHHHHHHHhccccccccCCcc
Confidence 99998876431 12589999999999999999998754 3333322
Q ss_pred ---C----ceeeeEEEEEEEcCeEEEEEecCCCccc
Q 007334 357 ---G----LTRDSVRVHFEYQGRTVYLVDTAGWLQR 385 (607)
Q Consensus 357 ---g----tT~~~~~~~~~~~~~~~~liDTpG~~~~ 385 (607)
| +|+...... + .....++||||+.++
T Consensus 249 ~~~G~g~~tt~~~~i~~--v-~q~~~l~dtpgv~e~ 281 (358)
T 2rcn_A 249 NVSGLGQHTTTAARLYH--F-PHGGDVIDSPGVREF 281 (358)
T ss_dssp ----------CCCEEEE--C-TTSCEEEECHHHHTC
T ss_pred ccCCCCccceEEEEEEE--E-CCCCEecCcccHHHh
Confidence 2 232222111 1 112357899986543
No 397
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.33 E-value=7.6e-12 Score=142.28 Aligned_cols=105 Identities=24% Similarity=0.269 Sum_probs=76.1
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCce-----------------eecCCCCceeeeEEEEEEEc-------CeEEEEEecC
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRV-----------------LVGPEAGLTRDSVRVHFEYQ-------GRTVYLVDTA 380 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~-----------------~~~~~~gtT~~~~~~~~~~~-------~~~~~liDTp 380 (607)
.+|+|+|+.++|||||..+|+..... .....-|+|.......+.|. +..++|+|||
T Consensus 14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTP 93 (709)
T 4fn5_A 14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTP 93 (709)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCC
Confidence 47999999999999999999732111 11223467776666667674 4689999999
Q ss_pred CCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCC
Q 007334 381 GWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSG 439 (607)
Q Consensus 381 G~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~ 439 (607)
|+.++. ..+.++++-+|++|+|+|+.++ .+...++|.|+++||+|....
T Consensus 94 GHvDF~----------~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 94 GHVDFT----------IEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGA 152 (709)
T ss_dssp SCTTCH----------HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTC
T ss_pred CCcccH----------HHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCc
Confidence 998873 3455788889999999999987 455679999999999998643
No 398
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.33 E-value=2.1e-12 Score=131.70 Aligned_cols=159 Identities=19% Similarity=0.234 Sum_probs=71.7
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCC--------CCceeeeEEEEEEEcC--eEEEEEecCCCcccccc-cCc
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPE--------AGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKE-KGP 391 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~--------~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~-~~~ 391 (607)
..++|+++|++|||||||+|+|.+.+....+.. +++..+.....+...+ ..+.+|||||+...... +..
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~ 96 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 96 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence 358999999999999999999987533322211 1111111112222222 46789999998432100 001
Q ss_pred chhH---HHHHHHHHhh-------------ccEEEEEeccch-h---------hHHhcCCcEEEEEeCccCCCCcCchHH
Q 007334 392 ASLS---VMQSRKNLMR-------------AHVVALVLDAEE-V---------RAVEEGRGLVVIVNKMDLLSGRQNSAL 445 (607)
Q Consensus 392 ~~~~---~~~~~~~i~~-------------ad~~llViD~~~-~---------~~~~~~~p~ivv~NK~Dl~~~~~~~~~ 445 (607)
..+. ......++.. +++++++++.+. + .......|+++|+||+|+........
T Consensus 97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~~~~~iilV~~K~Dl~~~~e~~~- 175 (301)
T 2qnr_A 97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTLTLKERER- 175 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHTTTSCEEEEECCGGGSCHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHHhcCCEEEEEEeCCCCCHHHHHH-
Confidence 1111 0111122222 455777766543 1 12234579999999999976422111
Q ss_pred HHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 446 YKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
..+.+.+... ..+++++++||++| |++++|..+.+.+
T Consensus 176 ---~~~~~~~~~~-----~~~~~~~e~Sa~~~-~v~e~f~~l~~~i 212 (301)
T 2qnr_A 176 ---LKKRILDEIE-----EHNIKIYHLPDAES-DEDEDFKEQTRLL 212 (301)
T ss_dssp ---HHHHHHHHHH-----HTTCCCCCCC----------CHHHHHHH
T ss_pred ---HHHHHHHHHH-----HcCCeEEecCCccc-cccHHHHHHHHHh
Confidence 1111111111 12578999999999 9999998877654
No 399
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.29 E-value=3e-12 Score=127.67 Aligned_cols=163 Identities=20% Similarity=0.260 Sum_probs=94.6
Q ss_pred CCceEEEEcCCCCchhHHHHHhh-----cCCceeecCCCCce----------------eeeEEEEE--------------
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALL-----QEDRVLVGPEAGLT----------------RDSVRVHF-------------- 367 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~-----~~~~~~~~~~~gtT----------------~~~~~~~~-------------- 367 (607)
....++++|++||||||+++.|. |.....+..-++.+ .+......
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRLM 92 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHHh
Confidence 34678899999999999999998 66555555444311 11000000
Q ss_pred -----------E-EcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh------h---------H
Q 007334 368 -----------E-YQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV------R---------A 420 (607)
Q Consensus 368 -----------~-~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~------~---------~ 420 (607)
. ..+..+.||||||..+..... .+ ......++.. +++++|+|+... . .
T Consensus 93 ~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~~~---~l-~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~ 167 (262)
T 1yrb_A 93 EKFNEYLNKILRLEKENDYVLIDTPGQMETFLFH---EF-GVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLID 167 (262)
T ss_dssp TTHHHHHHHHHHHHHHCSEEEEECCSSHHHHHHS---HH-HHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhcCCEEEEeCCCccchhhhh---hh-HHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHh
Confidence 0 012478999999975431100 00 0112234455 899999998653 0 1
Q ss_pred HhcCCcEEEEEeCccCCCCcCchHHHHHHHH--hcHHHH-----------------HhhCCCCCCCCEEEcccCCCCCHH
Q 007334 421 VEEGRGLVVIVNKMDLLSGRQNSALYKRVKE--AVPQEI-----------------QTVIPQVTGIPVVFTSALEGRGRI 481 (607)
Q Consensus 421 ~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~--~~~~~~-----------------~~~~~~~~~~~~v~iSA~~g~gv~ 481 (607)
...++|+++|+||+|+.......+..+.+.+ .+...+ .+.+ ....+++++||++|.|++
T Consensus 168 ~~~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~SA~~~~gi~ 245 (262)
T 1yrb_A 168 LRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEV--LPPVRVLYLSAKTREGFE 245 (262)
T ss_dssp HHHTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHH--SCCCCCEECCTTTCTTHH
T ss_pred cccCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHh--cCcccceEEEecCcccHH
Confidence 1247899999999998764221111111100 000010 0111 123588999999999999
Q ss_pred HHHHHHHHHHH
Q 007334 482 AVMHQVIDTYQ 492 (607)
Q Consensus 482 ~l~~~i~~~~~ 492 (607)
++++.+.+.+.
T Consensus 246 ~l~~~i~~~~~ 256 (262)
T 1yrb_A 246 DLETLAYEHYC 256 (262)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999987664
No 400
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.29 E-value=8.4e-12 Score=132.33 Aligned_cols=158 Identities=18% Similarity=0.249 Sum_probs=70.7
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecC-------CCCceeeeEEEEEEEcCe--EEEEEecCCCccccccc-Ccc
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGP-------EAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEK-GPA 392 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~-------~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~-~~~ 392 (607)
..++|+|+|++|||||||+|.|+|......+. .+.+..+.+...+...+. .+.+|||||+....... ...
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~ 109 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 109 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence 35789999999999999999999875322210 111112222222222332 67899999986541110 000
Q ss_pred hh---HHHHHHHH-----------Hh--hccEEEEEeccc-hh---------hHHhcCCcEEEEEeCccCCCCcCchHHH
Q 007334 393 SL---SVMQSRKN-----------LM--RAHVVALVLDAE-EV---------RAVEEGRGLVVIVNKMDLLSGRQNSALY 446 (607)
Q Consensus 393 ~~---~~~~~~~~-----------i~--~ad~~llViD~~-~~---------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~ 446 (607)
.+ .......+ +. .+|++|++++.+ .+ ..+..++|+|+|+||+|+.......
T Consensus 110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~~v~iIlVinK~Dll~~~ev~--- 186 (418)
T 2qag_C 110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQ--- 186 (418)
T ss_dssp HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTTTSEEEEEEESTTSSCHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhccCcEEEEEEcccCccHHHHH---
Confidence 00 00011111 22 256677777765 22 1223589999999999998643222
Q ss_pred HHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHH
Q 007334 447 KRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVID 489 (607)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~ 489 (607)
.+.+.+...+.. .+++++++||+++.++.+++..+..
T Consensus 187 -~~k~~i~~~~~~-----~~i~~~~~sa~~~~~v~~~~~~l~~ 223 (418)
T 2qag_C 187 -QFKKQIMKEIQE-----HKIKIYEFPETDDEEENKLVKKIKD 223 (418)
T ss_dssp -HHHHHHHHHHHH-----HTCCCCCCC----------------
T ss_pred -HHHHHHHHHHHH-----cCCeEEeCCCCCCcCHHHHHHHHHh
Confidence 222222222222 2678999999999999887766654
No 401
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.26 E-value=1.9e-12 Score=135.47 Aligned_cols=91 Identities=24% Similarity=0.233 Sum_probs=55.2
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC-----------------eEEEEEecCCCccc
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG-----------------RTVYLVDTAGWLQR 385 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~-----------------~~~~liDTpG~~~~ 385 (607)
.+++|++||.||||||||+|+|++.. ..++++|++|.++..+.+.+.+ ..+.+|||||+.+.
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~-~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQ-ASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC-ccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 45799999999999999999999875 4888999999998888777654 25899999998765
Q ss_pred cc-ccCcchhHHHHHHHHHhhccEEEEEeccchh
Q 007334 386 EK-EKGPASLSVMQSRKNLMRAHVVALVLDAEEV 418 (607)
Q Consensus 386 ~~-~~~~~~~~~~~~~~~i~~ad~~llViD~~~~ 418 (607)
.. ..+.. .....+++.+|++++|+|+++.
T Consensus 100 as~~~glg----~~~l~~ir~aD~Il~VvD~~~~ 129 (396)
T 2ohf_A 100 AHNGQGLG----NAFLSHISACDGIFHLTRAFED 129 (396)
T ss_dssp -------C----CHHHHHHHTSSSEEEEEEC---
T ss_pred cchhhHHH----HHHHHHHHhcCeEEEEEecCCC
Confidence 21 11111 1356788999999999999864
No 402
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.25 E-value=1.8e-11 Score=119.12 Aligned_cols=153 Identities=14% Similarity=0.140 Sum_probs=86.7
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccc-----eeeeccCCCCceeeee--------EEEEee-------------------
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRR-----EALVYNTPDDHVTRDI--------REGLAK------------------- 166 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~-----~~~v~~~~~~~~T~~~--------~~~~~~------------------- 166 (607)
..++|+|+|.+|||||||+++|+... .+.+...++ ++.|. ....+.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~--~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l 114 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVI--AKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDL 114 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETT--THHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTS
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCC--CCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHH
Confidence 46899999999999999999999752 222222222 11110 000000
Q ss_pred -eCCeeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCC
Q 007334 167 -LGDLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCE 245 (607)
Q Consensus 167 -~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D 245 (607)
..+..+.++||+|...... .+ -...+.++.|+|+..+...... .... . +.|.++|+||+|
T Consensus 115 ~~~~~d~~~id~~g~i~~~~-------s~------~~~~~~~~~v~~~~~~~~~~~~-~~~~---~--~~~~iiv~NK~D 175 (226)
T 2hf9_A 115 NLDEIDLLFIENVGNLICPA-------DF------DLGTHKRIVVISTTEGDDTIEK-HPGI---M--KTADLIVINKID 175 (226)
T ss_dssp CGGGCSEEEEECCSCSSGGG-------GC------CCSCSEEEEEEEGGGCTTTTTT-CHHH---H--TTCSEEEEECGG
T ss_pred hcCCCCEEEEeCCCCccCcc-------hh------hhccCcEEEEEecCcchhhHhh-hhhH---h--hcCCEEEEeccc
Confidence 0112566777777431100 00 0123556677776443221110 0111 2 468899999999
Q ss_pred cccCCcCcHHHHHHHHHhcC-CCCcEEeecCCCCChHHHHHHhccchH
Q 007334 246 SLHNGTGSLAGAAAESLMLG-FGDPIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~-~~~~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
+..............+..++ ..+++++||++|.|++++++.|.+.+.
T Consensus 176 l~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 223 (226)
T 2hf9_A 176 LADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK 223 (226)
T ss_dssp GHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence 87642222333333344332 226799999999999999999987654
No 403
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.24 E-value=2.8e-11 Score=117.78 Aligned_cols=148 Identities=16% Similarity=0.199 Sum_probs=83.5
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCC-----ceeecCCCCceeee--------EEEEEEE--------------------c
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQED-----RVLVGPEAGLTRDS--------VRVHFEY--------------------Q 370 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~-----~~~~~~~~gtT~~~--------~~~~~~~--------------------~ 370 (607)
..+|+++|.+|||||||+++|+... ...+...++++.|. ....+.. .
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~ 117 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNLD 117 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCGG
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhcC
Confidence 5789999999999999999998642 11222222222110 0011110 0
Q ss_pred CeEEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh------hHHhcCCcEEEEEeCccCCCCcCchH
Q 007334 371 GRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV------RAVEEGRGLVVIVNKMDLLSGRQNSA 444 (607)
Q Consensus 371 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~------~~~~~~~p~ivv~NK~Dl~~~~~~~~ 444 (607)
+..+.++||+|..... ..+. ...+..+.|+|+... .....++|.++|+||+|+.+....
T Consensus 118 ~~d~~~id~~g~i~~~-----~s~~--------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~-- 182 (226)
T 2hf9_A 118 EIDLLFIENVGNLICP-----ADFD--------LGTHKRIVVISTTEGDDTIEKHPGIMKTADLIVINKIDLADAVGA-- 182 (226)
T ss_dssp GCSEEEEECCSCSSGG-----GGCC--------CSCSEEEEEEEGGGCTTTTTTCHHHHTTCSEEEEECGGGHHHHTC--
T ss_pred CCCEEEEeCCCCccCc-----chhh--------hccCcEEEEEecCcchhhHhhhhhHhhcCCEEEEeccccCchhHH--
Confidence 1156677777742210 0000 124556677776442 111235788999999998643110
Q ss_pred HHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 445 LYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
..+.+.+ .+... ..+.+++++||++|.|++++|+.+.+.+..
T Consensus 183 ~~~~~~~----~~~~~---~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 183 DIKKMEN----DAKRI---NPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp CHHHHHH----HHHHH---CTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHH----HHHHh---CCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 1111111 11111 125689999999999999999999876654
No 404
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.18 E-value=8.8e-13 Score=138.40 Aligned_cols=148 Identities=17% Similarity=0.162 Sum_probs=92.0
Q ss_pred CEEEEecCCCCchhHHHHHhhcc-----ceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRR-----REALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAG 195 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~-----~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~ 195 (607)
.+|+++|.||||||||+|+|++. ....++..|+ +|++.....+ +..+.++||||+........... .
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~g--tT~~~~~~~~---~~~~~liDtPG~~~~~~~~~~l~---~ 234 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPG--TTLDMIEIPL---ESGATLYDTPGIINHHQMAHFVD---A 234 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTT--SSCEEEEEEC---STTCEEEECCSCCCCSSGGGGSC---T
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCC--eEEeeEEEEe---CCCeEEEeCCCcCcHHHHHHHHh---H
Confidence 47999999999999999999987 4566788888 8888765432 23489999999985432111110 1
Q ss_pred HHHHHh---hccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEe
Q 007334 196 MTANVL---AKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAI 272 (607)
Q Consensus 196 ~~~~~~---~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~i 272 (607)
..+..+ ...|.+++++|............++++... +.|+++|+||+|........... ......+|. ...+.
T Consensus 235 ~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~--~~~~~~v~~k~d~~~~~~~~~~~-~~~~~~~g~-~l~p~ 310 (369)
T 3ec1_A 235 RDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGG--RRSFVCYMANELTVHRTKLEKAD-SLYANQLGE-LLSPP 310 (369)
T ss_dssp TTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESS--SEEEEEEECTTSCEEEEEGGGHH-HHHHHHBTT-TBCSS
T ss_pred HHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccCC--CceEEEEecCCcccccccHHHHH-HHHHHhcCC-ccCCC
Confidence 122233 678999999998432111111112333333 67999999999988654322221 122233443 45566
Q ss_pred ecCCCCCh
Q 007334 273 SAETGLGM 280 (607)
Q Consensus 273 SA~~g~gi 280 (607)
++....++
T Consensus 311 ~~~~~~~~ 318 (369)
T 3ec1_A 311 SKRYAAEF 318 (369)
T ss_dssp CGGGTTTC
T ss_pred Cchhhhhc
Confidence 66554444
No 405
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.17 E-value=7.6e-13 Score=138.74 Aligned_cols=121 Identities=16% Similarity=0.192 Sum_probs=75.5
Q ss_pred CEEEEecCCCCchhHHHHHhhccc------eeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRR------EALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTA 194 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~------~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~ 194 (607)
.+|+++|.||||||||+|+|++.. ...++..|+ +|++.....+. ..+.++||||+............
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~g--tT~~~~~~~~~---~~~~liDtPG~~~~~~~~~~l~~-- 233 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPG--TTLDLIDIPLD---EESSLYDTPGIINHHQMAHYVGK-- 233 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC------CEEEEESS---SSCEEEECCCBCCTTSGGGGSCH--
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCC--eecceEEEEec---CCeEEEeCCCcCcHHHHHHHhhH--
Confidence 579999999999999999999863 445677887 88887654432 23899999999754321111111
Q ss_pred HHHHHH--hhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCC
Q 007334 195 GMTANV--LAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNG 250 (607)
Q Consensus 195 ~~~~~~--~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~ 250 (607)
...... ....+.+++++|............++++... +.|+++|+||+|.....
T Consensus 234 ~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~--~~~~~~v~nk~d~~~~~ 289 (368)
T 3h2y_A 234 QSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGG--RRAFTCHFSNRLTIHRT 289 (368)
T ss_dssp HHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESS--SEEEEEEECTTSCEEEE
T ss_pred HHHHHhccccccCceEEEEcCCCEEEEcceEEEEEecCC--CceEEEEecCccccccc
Confidence 111111 3567889999988432221221122334333 67999999999998753
No 406
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.12 E-value=5.2e-11 Score=124.64 Aligned_cols=90 Identities=27% Similarity=0.285 Sum_probs=54.4
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC-----------------eeEEEecCCCCcc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD-----------------LRFKVLDSAGLET 182 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~-----------------~~~~liDTpG~~~ 182 (607)
..+|+|||.||||||||+|+|++... .+++.|+ +|.+...+.+.+.+ ..+.+|||||+..
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~p~--tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~ 98 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQA-SAENFPF--CTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK 98 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC----------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCc-cccCCCc--cccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence 46799999999999999999999765 5677777 88888877776644 2499999999984
Q ss_pred ccCchhHHHHHHHHHHHHhhccCEEEEEEecCC
Q 007334 183 EATSGSILDRTAGMTANVLAKTQFAIFMIDVRS 215 (607)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~ 215 (607)
....+. ......+.+++.+|++++|+|+++
T Consensus 99 ~as~~~---glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 99 GAHNGQ---GLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp -----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred ccchhh---HHHHHHHHHHHhcCeEEEEEecCC
Confidence 332111 112245678899999999999975
No 407
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.08 E-value=9e-11 Score=120.18 Aligned_cols=124 Identities=16% Similarity=0.134 Sum_probs=80.0
Q ss_pred eEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccch----------h-----------hH
Q 007334 362 SVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEE----------V-----------RA 420 (607)
Q Consensus 362 ~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~----------~-----------~~ 420 (607)
.....+.+++..+.+|||+|+.+.+.. +..++++++++|+|+|.++ . ..
T Consensus 157 i~~~~~~~~~v~l~iwDtgGQe~~R~~----------w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i 226 (327)
T 3ohm_A 157 IIEYPFDLQSVIFRMVDVGGQRSERRK----------WIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTI 226 (327)
T ss_dssp EEEEEEEETTEEEEEEEECCSHHHHTT----------GGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHH
T ss_pred EEEEEEEeeceeeEEEEcCCchhHHHH----------HHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHH
Confidence 344567778899999999997654321 2357789999999997762 1 11
Q ss_pred ----HhcCCcEEEEEeCccCCCCcC----c----------hHHHHHHHHhcHHHHHhhC-CCCCCCCEEEcccCCCCCHH
Q 007334 421 ----VEEGRGLVVIVNKMDLLSGRQ----N----------SALYKRVKEAVPQEIQTVI-PQVTGIPVVFTSALEGRGRI 481 (607)
Q Consensus 421 ----~~~~~p~ivv~NK~Dl~~~~~----~----------~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~iSA~~g~gv~ 481 (607)
...+.|+++++||+|+.+..- . ....+...+-+...+.... +....+.++++||+++.||+
T Consensus 227 ~~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~ 306 (327)
T 3ohm_A 227 ITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIR 306 (327)
T ss_dssp HTSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHH
T ss_pred hhhhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHH
Confidence 124789999999999864210 0 0112222222222222211 22345678999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 007334 482 AVMHQVIDTYQKWC 495 (607)
Q Consensus 482 ~l~~~i~~~~~~~~ 495 (607)
.+|..+.+.+.+..
T Consensus 307 ~vF~~v~~~Il~~~ 320 (327)
T 3ohm_A 307 FVFAAVKDTILQLN 320 (327)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999988765433
No 408
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.07 E-value=1.9e-10 Score=120.63 Aligned_cols=92 Identities=22% Similarity=0.175 Sum_probs=74.0
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC-----------------eEEEEEecCCCccc
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG-----------------RTVYLVDTAGWLQR 385 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~-----------------~~~~liDTpG~~~~ 385 (607)
+..+|+++|.||||||||+|+|+|...+.++++|++|+++..+.+.+.+ ..+.+|||||+...
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 4578999999999999999999998755899999999999998888876 46889999998765
Q ss_pred ccccCcchhHHHHHHHHHhhccEEEEEeccch
Q 007334 386 EKEKGPASLSVMQSRKNLMRAHVVALVLDAEE 417 (607)
Q Consensus 386 ~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~ 417 (607)
... .+.+. .....+++.+|++++|+|+.+
T Consensus 99 ~s~--~e~L~-~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 99 AST--GVGLG-NAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCS--SSSSC-HHHHHHHTTCSEEEEEEECCC
T ss_pred CcH--HHHHH-HHHHHHHHHHHHHHHHHhccc
Confidence 211 11121 234567889999999999876
No 409
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.07 E-value=2e-10 Score=124.24 Aligned_cols=158 Identities=16% Similarity=0.235 Sum_probs=96.2
Q ss_pred CCEEEEecCCCCchhHHHHHhh------ccceeeeccCCCCcee------------eeeEEE---------------Eee
Q 007334 120 LPTVMIIGRPNVGKSALFNRLI------RRREALVYNTPDDHVT------------RDIREG---------------LAK 166 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~------~~~~~~v~~~~~~~~T------------~~~~~~---------------~~~ 166 (607)
...|+|+|.+||||||++++|. |.+..++...+..... .++... ...
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~~ 180 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK 180 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHHH
Confidence 4589999999999999999999 7776666543221110 011000 001
Q ss_pred eCCeeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcE-EEEecCCC
Q 007334 167 LGDLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKP-IVAMNKCE 245 (607)
Q Consensus 167 ~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~-ilV~NK~D 245 (607)
+.+..+.||||||..... .....+.. .... +..+|.+++|+|++.+.. ...+.+.+.+. .|+ ++|+||+|
T Consensus 181 ~~~~DvvIIDTpG~~~~~--~~l~~el~-~~~~-~i~pd~vllVvDa~~g~~--~~~~a~~~~~~---~~i~gvVlNK~D 251 (504)
T 2j37_W 181 NENFEIIIVDTSGRHKQE--DSLFEEML-QVAN-AIQPDNIVYVMDASIGQA--CEAQAKAFKDK---VDVASVIVTKLD 251 (504)
T ss_dssp HTTCCEEEEEECCCCTTC--HHHHHHHH-HHHH-HHCCSEEEEEEETTCCTT--HHHHHHHHHHH---HCCCCEEEECTT
T ss_pred HCCCcEEEEeCCCCcccc--hhHHHHHH-HHHh-hhcCceEEEEEecccccc--HHHHHHHHHhh---cCceEEEEeCCc
Confidence 256789999999987421 11222221 1122 237899999999988754 33344444432 574 89999999
Q ss_pred cccCCcCcHHHHHHHHHhcC-----------------CCCcEEeecCCCCC-hHHHHHHhccc
Q 007334 246 SLHNGTGSLAGAAAESLMLG-----------------FGDPIAISAETGLG-MTELYEALRPS 290 (607)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~-----------------~~~~i~iSA~~g~g-i~eL~~~i~~~ 290 (607)
....... ........+ +.+.+++|+.+|.| +++|++++.+.
T Consensus 252 ~~~~~g~----~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 252 GHAKGGG----ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp SCCCCTH----HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred cccchHH----HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 8753211 111112222 22335689999999 99999998765
No 410
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.05 E-value=2.7e-11 Score=131.14 Aligned_cols=183 Identities=20% Similarity=0.196 Sum_probs=103.0
Q ss_pred CCceEEEEcCCCCchhHHHHHhh------cCCceeecCCC---Cc--------e---eeeEEE---------------EE
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALL------QEDRVLVGPEA---GL--------T---RDSVRV---------------HF 367 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~------~~~~~~~~~~~---gt--------T---~~~~~~---------------~~ 367 (607)
.+..|+++|.+||||||++++|. |.....++.-+ +. + .+.+.. .+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 35679999999999999999998 66554443311 10 0 111100 00
Q ss_pred EEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh-------hHHhcCCcE-EEEEeCccCCCC
Q 007334 368 EYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV-------RAVEEGRGL-VVIVNKMDLLSG 439 (607)
Q Consensus 368 ~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~-------~~~~~~~p~-ivv~NK~Dl~~~ 439 (607)
.+.+..+.||||||....... ....+ .....+ ..+|.+++|+|++.+ ..+...+|+ ++|+||+|....
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~-l~~el--~~~~~~-i~pd~vllVvDa~~g~~~~~~a~~~~~~~~i~gvVlNK~D~~~~ 255 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDS-LFEEM--LQVANA-IQPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAK 255 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHH-HHHHH--HHHHHH-HCCSEEEEEEETTCCTTHHHHHHHHHHHHCCCCEEEECTTSCCC
T ss_pred HHCCCcEEEEeCCCCcccchh-HHHHH--HHHHhh-hcCceEEEEEeccccccHHHHHHHHHhhcCceEEEEeCCccccc
Confidence 125678999999997542100 00011 111122 279999999999865 122223675 899999998754
Q ss_pred cCchHHHHHHHHhcHHHH-----HhhCC-CCCCCCEEEcccCCCCC-HHHHHHHHHHHH----HHHhcCCChHH--HHHH
Q 007334 440 RQNSALYKRVKEAVPQEI-----QTVIP-QVTGIPVVFTSALEGRG-RIAVMHQVIDTY----QKWCLRLPTSR--LNRW 506 (607)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~v~iSA~~g~g-v~~l~~~i~~~~----~~~~~~~~~~~--l~~~ 506 (607)
... ... +.+.+...+ .+.+. ...+.|.+++||..|.| +.+|++++.+.. +++..++.+++ ++++
T Consensus 256 ~g~--~l~-~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~~~~~~~~l~~k~~~g~~~l~d~ 332 (504)
T 2j37_W 256 GGG--ALS-AVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQFTLRDM 332 (504)
T ss_dssp CTH--HHH-HHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTTTTCCCTTTTTSCTTSGGGGCCC
T ss_pred hHH--HHH-HHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 321 111 111000000 00010 01133567789999999 999999988762 23445666665 6666
Q ss_pred HHHHHH
Q 007334 507 LRKVMG 512 (607)
Q Consensus 507 l~~~~~ 512 (607)
+..+..
T Consensus 333 ~~~l~~ 338 (504)
T 2j37_W 333 YEQFQN 338 (504)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666554
No 411
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.00 E-value=1.7e-10 Score=118.53 Aligned_cols=122 Identities=16% Similarity=0.118 Sum_probs=77.8
Q ss_pred eEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccch----------h-----------hH
Q 007334 362 SVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEE----------V-----------RA 420 (607)
Q Consensus 362 ~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~----------~-----------~~ 420 (607)
.....+.+++..+.||||+|+.+.+ ..+..++++++++|+|+|.++ . ..
T Consensus 151 i~~~~~~~~~v~l~iwDtaGQe~~R----------~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i 220 (340)
T 4fid_A 151 IHEYDFVVKDIPFHLIDVGGQRSER----------KXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDI 220 (340)
T ss_dssp CEEEEEESSSCEEEEEECCSCHHHH----------HHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHH
T ss_pred eEEEEEEeeeeeeccccCCCccccc----------ccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHH
Confidence 3445566788899999999964432 234567889999999999982 1 11
Q ss_pred ----HhcCCcEEEEEeCccCCCCcC-------------chHHHHHHHHhcHHHH------HhhC-CCC-----------C
Q 007334 421 ----VEEGRGLVVIVNKMDLLSGRQ-------------NSALYKRVKEAVPQEI------QTVI-PQV-----------T 465 (607)
Q Consensus 421 ----~~~~~p~ivv~NK~Dl~~~~~-------------~~~~~~~~~~~~~~~~------~~~~-~~~-----------~ 465 (607)
...+.|+||++||+|+....- ....++...+.+...+ .... +.. .
T Consensus 221 ~~~~~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (340)
T 4fid_A 221 MTNEFLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNE 300 (340)
T ss_dssp HHCGGGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------C
T ss_pred hhhhccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCc
Confidence 124789999999999854210 0001222222222222 1100 111 2
Q ss_pred CCCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 466 GIPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 466 ~~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
.+.++++||+++.||..+|..+.+.+.+
T Consensus 301 ~iy~h~TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 301 KVYTNPTNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp EEEEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEeeCcHHHHHHHHHHHHHHHH
Confidence 4778999999999999999999886543
No 412
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.98 E-value=1.5e-09 Score=114.66 Aligned_cols=149 Identities=15% Similarity=0.213 Sum_probs=82.1
Q ss_pred CCEEEEecCCCCchhHHHHHhhcccee---eeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCch----h--
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREA---LVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSG----S-- 188 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~---~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~----~-- 188 (607)
.++++|||.+|+|||||+|.|+|.... .....++ .++..........+ ..+.++||+|+....... .
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~--~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~ 119 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPG--VQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIV 119 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSS--CEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCcc--ceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHH
Confidence 356999999999999999999987421 1111222 34432222222222 268999999997432211 0
Q ss_pred --HHHHHHHHHHHHh---------hcc--C-EEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcH
Q 007334 189 --ILDRTAGMTANVL---------AKT--Q-FAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSL 254 (607)
Q Consensus 189 --~~~~~~~~~~~~~---------~~a--d-~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~ 254 (607)
+...+......+. .++ | +++||+|++++.+..|.+++++|. .+.|+|+|+||+|.+...+...
T Consensus 120 ~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~---~~~~vI~Vi~KtD~Lt~~E~~~ 196 (427)
T 2qag_B 120 EFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD---SKVNIIPIIAKADAISKSELTK 196 (427)
T ss_dssp HHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC---SCSEEEEEESCGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh---hCCCEEEEEcchhccchHHHHH
Confidence 1111111111111 122 2 577889999999999988888876 3789999999999986432111
Q ss_pred -HHHHH-HHHhcCCCCcEEeec
Q 007334 255 -AGAAA-ESLMLGFGDPIAISA 274 (607)
Q Consensus 255 -~~~~~-~~~~~~~~~~i~iSA 274 (607)
..... .+...|. .++.+|.
T Consensus 197 l~~~I~~~L~~~gi-~I~~is~ 217 (427)
T 2qag_B 197 FKIKITSELVSNGV-QIYQFPT 217 (427)
T ss_dssp HHHHHHHHHBTTBC-CCCCCC-
T ss_pred HHHHHHHHHHHcCC-cEEecCC
Confidence 11111 1333444 6677774
No 413
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.96 E-value=6.2e-10 Score=116.82 Aligned_cols=91 Identities=24% Similarity=0.240 Sum_probs=71.7
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC-----------------eeEEEecCCCCcc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD-----------------LRFKVLDSAGLET 182 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~-----------------~~~~liDTpG~~~ 182 (607)
..+|+|||.||||||||||+|++...+.+++.|+ +|.+...+.+.+.+ ..+.+|||||+..
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~--tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPY--ATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSS--CCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCc--eeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 4689999999999999999999987656788888 89988888887765 3589999999985
Q ss_pred ccCchhHHHHHHHHHHHHhhccCEEEEEEecCC
Q 007334 183 EATSGSILDRTAGMTANVLAKTQFAIFMIDVRS 215 (607)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~ 215 (607)
....... ........++.+|.+++|+|+.+
T Consensus 98 ~~s~~e~---L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVG---LGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSS---SCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHH---HHHHHHHHHHHHHHHHHHHhccc
Confidence 4432221 11234567889999999999975
No 414
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.95 E-value=2.6e-10 Score=118.38 Aligned_cols=124 Identities=16% Similarity=0.094 Sum_probs=85.2
Q ss_pred eeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCC-------HhH-HHHHHHHHh
Q 007334 159 DIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLH-------PLD-LEVGKWLRK 230 (607)
Q Consensus 159 ~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~-------~~~-~~~~~~l~~ 230 (607)
......+.+++..+.+|||+|+. .+...+..++++++++|||+|+++..+ ... .++..|+..
T Consensus 182 Gi~~~~~~~~~~~l~iwDt~GQe----------~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~ 251 (353)
T 1cip_A 182 GIVETHFTFKDLHFKMFDVGGQR----------SERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDS 251 (353)
T ss_dssp SEEEEEEEETTEEEEEEEECCSG----------GGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHH
T ss_pred ceEEEEEeeCCeeEEEEeCCCch----------hhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHH
Confidence 34445566788999999999998 445566778999999999999998432 111 233444443
Q ss_pred h-----CCCCcEEEEecCCCcccCC---------------cCcHHHHHHHHH----h-------cCCCCcEEeecCCCCC
Q 007334 231 H-----APQIKPIVAMNKCESLHNG---------------TGSLAGAAAESL----M-------LGFGDPIAISAETGLG 279 (607)
Q Consensus 231 ~-----~~~~p~ilV~NK~D~~~~~---------------~~~~~~~~~~~~----~-------~~~~~~i~iSA~~g~g 279 (607)
. ..+.|+|+|+||+|+.... ....++....+. . .++ .++++||++|.|
T Consensus 252 i~~~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~-~~~etSA~~~~n 330 (353)
T 1cip_A 252 ICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEI-YTHFTCATDTKN 330 (353)
T ss_dssp HHTCGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCE-EEEECCTTCHHH
T ss_pred HHcCccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCce-EEEEEECcCchh
Confidence 2 3578999999999986321 122333333332 1 122 568999999999
Q ss_pred hHHHHHHhccchHH
Q 007334 280 MTELYEALRPSVED 293 (607)
Q Consensus 280 i~eL~~~i~~~l~~ 293 (607)
|+++|+++.+.+..
T Consensus 331 V~~vF~~v~~~i~~ 344 (353)
T 1cip_A 331 VQFVFDAVTDVIIK 344 (353)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999877643
No 415
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.90 E-value=1.5e-08 Score=106.99 Aligned_cols=162 Identities=15% Similarity=0.046 Sum_probs=95.5
Q ss_pred CCEEEEecCCCCchhHHHHHhhccc----eeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRR----EALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAG 195 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~----~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~ 195 (607)
...|+|+|++|||||||+|.|+|-. ..+..... .+|+....... .....+.++|+||+.... . ...++..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~--~~t~~~~v~q~-~~~~~ltv~D~~g~~~~~--~-~~~~~L~ 142 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVV--EVTMERHPYKH-PNIPNVVFWDLPGIGSTN--F-PPDTYLE 142 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC------CCCEEEEC-SSCTTEEEEECCCGGGSS--C-CHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCe--ecceeEEeccc-cccCCeeehHhhcccchH--H-HHHHHHH
Confidence 3589999999999999999999832 22211111 13332111111 112368999999986321 1 1112211
Q ss_pred HHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccC-------CcCcHH---HHHHHH----
Q 007334 196 MTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHN-------GTGSLA---GAAAES---- 261 (607)
Q Consensus 196 ~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~-------~~~~~~---~~~~~~---- 261 (607)
. ..+...+..++ ++... ...++..++.++... ++|+++|.||.|+.-- +..... ......
T Consensus 143 ~--~~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~--~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~ 216 (413)
T 1tq4_A 143 K--MKFYEYDFFII-ISATR-FKKNDIDIAKAISMM--KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNT 216 (413)
T ss_dssp H--TTGGGCSEEEE-EESSC-CCHHHHHHHHHHHHT--TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHH
T ss_pred H--cCCCccCCeEE-eCCCC-ccHHHHHHHHHHHhc--CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHH
Confidence 1 12445566555 66654 456666788888776 6899999999997620 111111 122222
Q ss_pred -HhcC--CCCcEEeec--CCCCChHHHHHHhccchHH
Q 007334 262 -LMLG--FGDPIAISA--ETGLGMTELYEALRPSVED 293 (607)
Q Consensus 262 -~~~~--~~~~i~iSA--~~g~gi~eL~~~i~~~l~~ 293 (607)
...| ...++.+|+ ..+.|+++|.+.|.+.+++
T Consensus 217 l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 217 FRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 253 (413)
T ss_dssp HHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred HHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCcc
Confidence 1222 346799999 6777899999999887765
No 416
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.88 E-value=8.7e-10 Score=112.85 Aligned_cols=126 Identities=13% Similarity=0.093 Sum_probs=87.1
Q ss_pred eeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecC-------CCCCHhH-HHHHHHH
Q 007334 157 TRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVR-------SGLHPLD-LEVGKWL 228 (607)
Q Consensus 157 T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s-------~~~~~~~-~~~~~~l 228 (607)
|.......+..++.++.+|||+|++ .+...+..++++++++|+|+|++ +..+... .+...|+
T Consensus 154 TiGi~~~~~~~~~v~l~iwDtgGQe----------~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~ 223 (327)
T 3ohm_A 154 TTGIIEYPFDLQSVIFRMVDVGGQR----------SERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALF 223 (327)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSH----------HHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHH
T ss_pred eeeEEEEEEEeeceeeEEEEcCCch----------hHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHH
Confidence 3344555667788999999999998 67777888999999999999887 3222222 2244444
Q ss_pred Hhh-----CCCCcEEEEecCCCcccCC----------------cCcHHHHHHHH----Hh------cCCCCcEEeecCCC
Q 007334 229 RKH-----APQIKPIVAMNKCESLHNG----------------TGSLAGAAAES----LM------LGFGDPIAISAETG 277 (607)
Q Consensus 229 ~~~-----~~~~p~ilV~NK~D~~~~~----------------~~~~~~~~~~~----~~------~~~~~~i~iSA~~g 277 (607)
... ..+.|+++++||+|+...+ ....++....+ .. .++ .++++||+++
T Consensus 224 ~~i~~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i-~~~~TsA~d~ 302 (327)
T 3ohm_A 224 RTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKII-YSHFTCATDT 302 (327)
T ss_dssp HHHHTSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCE-EEEECCTTCH
T ss_pred HHHhhhhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCc-EEEEEEeecC
Confidence 433 2578999999999987532 12233332221 11 122 3578999999
Q ss_pred CChHHHHHHhccchHH
Q 007334 278 LGMTELYEALRPSVED 293 (607)
Q Consensus 278 ~gi~eL~~~i~~~l~~ 293 (607)
.||+++|+.+.+.+..
T Consensus 303 ~nV~~vF~~v~~~Il~ 318 (327)
T 3ohm_A 303 ENIRFVFAAVKDTILQ 318 (327)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999877643
No 417
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.87 E-value=1.7e-09 Score=112.34 Aligned_cols=122 Identities=16% Similarity=0.222 Sum_probs=79.0
Q ss_pred EEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh---------------------hHH
Q 007334 363 VRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV---------------------RAV 421 (607)
Q Consensus 363 ~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~---------------------~~~ 421 (607)
....+.+++..+.+|||+|+.+.+.. ...+++++|++|+|+|.++. ...
T Consensus 184 ~~~~~~~~~~~l~iwDt~GQe~~r~~----------w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~ 253 (353)
T 1cip_A 184 VETHFTFKDLHFKMFDVGGQRSERKK----------WIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSIC 253 (353)
T ss_dssp EEEEEEETTEEEEEEEECCSGGGGGG----------GGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEeeCCeeEEEEeCCCchhhhHH----------HHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHH
Confidence 34567778899999999998655322 22467789999999999982 111
Q ss_pred ----hcCCcEEEEEeCccCCCCcC----c---------hHHHHHHHHhcHHHHHhhCC--CCCCCCEEEcccCCCCCHHH
Q 007334 422 ----EEGRGLVVIVNKMDLLSGRQ----N---------SALYKRVKEAVPQEIQTVIP--QVTGIPVVFTSALEGRGRIA 482 (607)
Q Consensus 422 ----~~~~p~ivv~NK~Dl~~~~~----~---------~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~iSA~~g~gv~~ 482 (607)
..+.|+||++||+|+..... . ....+...+.+...+..... ....++++++||++|.||.+
T Consensus 254 ~~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~ 333 (353)
T 1cip_A 254 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQF 333 (353)
T ss_dssp TCGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHH
T ss_pred cCccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHH
Confidence 24789999999999853210 0 00112221111111111111 12467899999999999999
Q ss_pred HHHHHHHHHHHH
Q 007334 483 VMHQVIDTYQKW 494 (607)
Q Consensus 483 l~~~i~~~~~~~ 494 (607)
+|+++.+.+.+.
T Consensus 334 vF~~v~~~i~~~ 345 (353)
T 1cip_A 334 VFDAVTDVIIKN 345 (353)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998876543
No 418
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.86 E-value=9.6e-10 Score=114.54 Aligned_cols=122 Identities=11% Similarity=0.069 Sum_probs=78.8
Q ss_pred eeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCC----------CHhHHHHHHHH
Q 007334 159 DIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGL----------HPLDLEVGKWL 228 (607)
Q Consensus 159 ~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~----------~~~~~~~~~~l 228 (607)
......+.+++..+.+|||+|+. .+...+..++++++++|||+|+++.. +.. +...|+
T Consensus 190 Gi~~~~~~~~~~~l~i~Dt~Gq~----------~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~--es~~~~ 257 (362)
T 1zcb_A 190 GIHEYDFEIKNVPFKMVDVGGQR----------SERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLT--ESLNIF 257 (362)
T ss_dssp SEEEEEEEETTEEEEEEEECC-----------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHH--HHHHHH
T ss_pred ceEEEEeeeCCeEEEEEeccchh----------hhhhhHHHHhCCCCEEEEEEECccccccccccccccHHH--HHHHHH
Confidence 33445566788999999999998 55566778899999999999999831 222 233333
Q ss_pred Hhh-----CCCCcEEEEecCCCcccCC----------------cCcHHHHHHHH----Hh-------cCCCCcEEeecCC
Q 007334 229 RKH-----APQIKPIVAMNKCESLHNG----------------TGSLAGAAAES----LM-------LGFGDPIAISAET 276 (607)
Q Consensus 229 ~~~-----~~~~p~ilV~NK~D~~~~~----------------~~~~~~~~~~~----~~-------~~~~~~i~iSA~~ 276 (607)
... ..+.|+|+|+||+|+.... ....++....+ .. .++ .++++||++
T Consensus 258 ~~i~~~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~-~~~~tSA~d 336 (362)
T 1zcb_A 258 ETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPL-YHHFTTAIN 336 (362)
T ss_dssp HHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CC-EEEECCTTC
T ss_pred HHHhcchhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCce-EEEEEecCC
Confidence 332 3578999999999987421 12233332222 11 122 457899999
Q ss_pred CCChHHHHHHhccchHH
Q 007334 277 GLGMTELYEALRPSVED 293 (607)
Q Consensus 277 g~gi~eL~~~i~~~l~~ 293 (607)
|.||+++|+.+.+.+..
T Consensus 337 ~~nV~~vF~~v~~~i~~ 353 (362)
T 1zcb_A 337 TENIRLVFRDVKDTILH 353 (362)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHH
Confidence 99999999999877644
No 419
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.85 E-value=4.1e-09 Score=111.24 Aligned_cols=141 Identities=16% Similarity=0.248 Sum_probs=75.4
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCce---eecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccc---cC-cchhH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRV---LVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKE---KG-PASLS 395 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~---~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~---~~-~~~~~ 395 (607)
++++|+|++|+|||||+|.|+|.... .....++.++..+...+...+. .+.++|++|+...... +. ...+.
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i 122 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI 122 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence 45999999999999999999986421 1222355565544333332232 6789999998643110 00 00011
Q ss_pred HHHHHHHHh-------------h--cc-EEEEEeccchh---------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHH
Q 007334 396 VMQSRKNLM-------------R--AH-VVALVLDAEEV---------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVK 450 (607)
Q Consensus 396 ~~~~~~~i~-------------~--ad-~~llViD~~~~---------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~ 450 (607)
..+...++. . .| ++++|+|+..+ ..+..++|+|+|.||+|.+...+....+..
T Consensus 123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~-- 200 (427)
T 2qag_B 123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKADAISKSELTKFKIK-- 200 (427)
T ss_dssp HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHhhCCCEEEEEcchhccchHHHHHHHHH--
Confidence 111111111 1 23 46677787654 223368899999999998865433222222
Q ss_pred HhcHHHHHhhCCCCCCCCEEEccc
Q 007334 451 EAVPQEIQTVIPQVTGIPVVFTSA 474 (607)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~v~iSA 474 (607)
+...+. ..+++++++|.
T Consensus 201 --I~~~L~-----~~gi~I~~is~ 217 (427)
T 2qag_B 201 --ITSELV-----SNGVQIYQFPT 217 (427)
T ss_dssp --HHHHHB-----TTBCCCCCCC-
T ss_pred --HHHHHH-----HcCCcEEecCC
Confidence 222222 13667777764
No 420
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.84 E-value=2.4e-09 Score=111.59 Aligned_cols=122 Identities=17% Similarity=0.190 Sum_probs=74.4
Q ss_pred EEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccch----------h-----------hH--
Q 007334 364 RVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEE----------V-----------RA-- 420 (607)
Q Consensus 364 ~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~----------~-----------~~-- 420 (607)
...+.+++..+.+|||||+...+..+ ..++++++++|+|+|+++ . ..
T Consensus 193 ~~~~~~~~~~l~i~Dt~Gq~~~r~~w----------~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~ 262 (362)
T 1zcb_A 193 EYDFEIKNVPFKMVDVGGQRSERKRW----------FECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVN 262 (362)
T ss_dssp EEEEEETTEEEEEEEECC-------C----------TTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHT
T ss_pred EEEeeeCCeEEEEEeccchhhhhhhH----------HHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhc
Confidence 35567788999999999986543211 245678999999999987 2 11
Q ss_pred --HhcCCcEEEEEeCccCCCCc--------------CchHHHHHHHHhcHHHHHhhCCC--CCCCCEEEcccCCCCCHHH
Q 007334 421 --VEEGRGLVVIVNKMDLLSGR--------------QNSALYKRVKEAVPQEIQTVIPQ--VTGIPVVFTSALEGRGRIA 482 (607)
Q Consensus 421 --~~~~~p~ivv~NK~Dl~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~iSA~~g~gv~~ 482 (607)
...+.|+||++||+|+.... +.....+...+.+...+...... ...+.++++||++|.||++
T Consensus 263 ~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~ 342 (362)
T 1zcb_A 263 NRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRL 342 (362)
T ss_dssp CGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHH
T ss_pred chhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHH
Confidence 12478999999999986321 00011122211111111111111 2357899999999999999
Q ss_pred HHHHHHHHHHHHh
Q 007334 483 VMHQVIDTYQKWC 495 (607)
Q Consensus 483 l~~~i~~~~~~~~ 495 (607)
+|..+.+.+.+..
T Consensus 343 vF~~v~~~i~~~~ 355 (362)
T 1zcb_A 343 VFRDVKDTILHDN 355 (362)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999988765433
No 421
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.82 E-value=1.6e-08 Score=101.10 Aligned_cols=126 Identities=20% Similarity=0.340 Sum_probs=74.5
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccC-----CCCceeeeeEEEEeee-C--CeeEEEecCCCCccccCch---hH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNT-----PDDHVTRDIREGLAKL-G--DLRFKVLDSAGLETEATSG---SI 189 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~-----~~~~~T~~~~~~~~~~-~--~~~~~liDTpG~~~~~~~~---~~ 189 (607)
++|+|||.+|+|||||+|.|+|......+.. +...++.....+.+.- . ...+.++|++|+....... ..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 5799999999999999999998643221110 0000111112222211 1 1368999999997432211 11
Q ss_pred HHHH-----HHHHHHH----------hhccCEEEEEEec-CCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccC
Q 007334 190 LDRT-----AGMTANV----------LAKTQFAIFMIDV-RSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHN 249 (607)
Q Consensus 190 ~~~~-----~~~~~~~----------~~~ad~vl~VvD~-s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~ 249 (607)
..++ ....... +..++++++++|. +++..+.+.+++++|.+. .++|+|+||+|....
T Consensus 83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~---~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV---VNIIPVIAKADTMTL 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT---SEEEEEETTGGGSCH
T ss_pred HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc---CcEEEEEeccccCCH
Confidence 1111 1111111 2235888999986 488999998888888763 799999999998874
No 422
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.80 E-value=4.6e-09 Score=115.52 Aligned_cols=102 Identities=17% Similarity=0.233 Sum_probs=64.5
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEee-------eCCeeEEEecCCCCccccC-chhHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAK-------LGDLRFKVLDSAGLETEAT-SGSILD 191 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~-------~~~~~~~liDTpG~~~~~~-~~~~~~ 191 (607)
..+|+|+|.||||||||+|+|+|....+ ..++ +|++.+.+... ..+..+.|+||||+..... ......
T Consensus 38 ~~~VaivG~pnvGKStLiN~L~g~~~~~--~~~~--tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~~ 113 (592)
T 1f5n_A 38 MVVVAIVGLYRTGKSYLMNKLAGKKKGF--SLGS--TVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDS 113 (592)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTCSSCS--CCCC--SSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHH
T ss_pred CcEEEEECCCCCCHHHHHHhHcCCCCcc--ccCC--CCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHHH
Confidence 5689999999999999999999987432 3333 44443333322 2567899999999985332 111111
Q ss_pred HHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHh
Q 007334 192 RTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRK 230 (607)
Q Consensus 192 ~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~ 230 (607)
..+ ++..+. ++ ++|+|+..+++..+..++.++.+
T Consensus 114 ~~f--ala~ll-ss--~lv~n~~~~i~~~dl~~l~~v~e 147 (592)
T 1f5n_A 114 WIF--ALAVLL-SS--TFVYNSIGTINQQAMDQLYYVTE 147 (592)
T ss_dssp HHH--HHHHHH-CS--EEEEEEESCSSHHHHHTTHHHHT
T ss_pred HHH--HHHHHh-cC--eEEEECCCCccHHHHHHHHHHHH
Confidence 111 122222 33 67888888899988776655544
No 423
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.77 E-value=2e-10 Score=122.54 Aligned_cols=181 Identities=21% Similarity=0.237 Sum_probs=97.1
Q ss_pred CceEEEEcCCCCchhHHHHHhhcC------CceeecC------------------------CCCceeeeEEE----EEEE
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQE------DRVLVGP------------------------EAGLTRDSVRV----HFEY 369 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~------~~~~~~~------------------------~~gtT~~~~~~----~~~~ 369 (607)
+..|+++|.+||||||+++.|.+. ....+.. ..++++|+... .-.+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 457999999999999999999753 2222211 11133432110 0001
Q ss_pred cCeEEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh-------hHHhcCC-c-EEEEEeCccCCCCc
Q 007334 370 QGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV-------RAVEEGR-G-LVVIVNKMDLLSGR 440 (607)
Q Consensus 370 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~-------~~~~~~~-p-~ivv~NK~Dl~~~~ 440 (607)
.+..+.|+||||..... ...+..+.....+..+|.+++|+|++.+ ..+.... | ..+|+||+|.....
T Consensus 179 ~~~D~vIIDT~G~~~~~----~~l~~~l~~i~~~~~~d~vllVvda~~g~~~~~~~~~~~~~~~~i~gvVlnK~D~~~~~ 254 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEE----KGLLEEMKQIKEITNPDEIILVIDGTIGQQAGIQAKAFKEAVGEIGSIIVTKLDGSAKG 254 (432)
T ss_dssp SSCSEEEEECCCSCSSH----HHHHHHHHHTTSSSCCSEEEEEEEGGGGGGHHHHHHHHHTTSCSCEEEEEECSSSCSTT
T ss_pred hCCCEEEEcCCCCcccc----HHHHHHHHHHHHHhcCcceeEEeeccccHHHHHHHHHHhhcccCCeEEEEeCCCCccch
Confidence 56689999999965321 0111111112222368999999999876 2233446 6 89999999986432
Q ss_pred CchHHHHHHHHhcHHHH-----HhhCCC-CCCCCEEEcccCCCCC-HHHHHHHHHHHHHH----HhcCCChHH--HHHHH
Q 007334 441 QNSALYKRVKEAVPQEI-----QTVIPQ-VTGIPVVFTSALEGRG-RIAVMHQVIDTYQK----WCLRLPTSR--LNRWL 507 (607)
Q Consensus 441 ~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~v~iSA~~g~g-v~~l~~~i~~~~~~----~~~~~~~~~--l~~~l 507 (607)
. .... +...+...+ ++.+.. ..+.|..++||..|.| +..+++.+.+.+.+ ...++.+++ +++++
T Consensus 255 g--~~l~-~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~~~e~~~~~~~k~~~~~~~~~~~~ 331 (432)
T 2v3c_C 255 G--GALS-AVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAEDMVDEKTEESIDAIMRGKFTLNELM 331 (432)
T ss_dssp H--HHHH-HHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTSCSCSSSSTTHHHHCCSCCHHHHHH
T ss_pred H--HHHH-HHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHHHHHHhhhHHHHHHHHcCCCCHHHHH
Confidence 1 1111 111110000 000000 1233556789999999 88888877654432 122223333 56666
Q ss_pred HHHH
Q 007334 508 RKVM 511 (607)
Q Consensus 508 ~~~~ 511 (607)
..+.
T Consensus 332 ~~l~ 335 (432)
T 2v3c_C 332 TQLE 335 (432)
T ss_dssp HHTT
T ss_pred HHHH
Confidence 5543
No 424
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.74 E-value=4.5e-09 Score=110.39 Aligned_cols=120 Identities=15% Similarity=0.128 Sum_probs=81.7
Q ss_pred EEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCC----------CCCHhHHHHHHHHHh
Q 007334 161 REGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRS----------GLHPLDLEVGKWLRK 230 (607)
Q Consensus 161 ~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~----------~~~~~~~~~~~~l~~ 230 (607)
....+.+++..+.+|||+|+. .+...+..+++.++++|+|+|+++ ..+.. ++..|+..
T Consensus 208 ~~~~~~~~~v~l~iwDtaGQe----------~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~--e~~~~~~~ 275 (402)
T 1azs_C 208 FETKFQVDKVNFHMFDVGGQR----------DERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQ--EALNLFKS 275 (402)
T ss_dssp EEEEEEETTEEEEEEEECCSG----------GGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHH--HHHHHHHH
T ss_pred EEEEeecCCccceecccchhh----------hhhhhhHhhccCCCEEEEEEECcccccccccccccchHH--HHHHHHHH
Confidence 334556678999999999998 455667788999999999999997 33332 24444443
Q ss_pred h-----CCCCcEEEEecCCCcccCCc---C---------------------------cHHHHHHH----HHhc-------
Q 007334 231 H-----APQIKPIVAMNKCESLHNGT---G---------------------------SLAGAAAE----SLML------- 264 (607)
Q Consensus 231 ~-----~~~~p~ilV~NK~D~~~~~~---~---------------------------~~~~~~~~----~~~~------- 264 (607)
. ..+.|+|+|+||+|+...+. . ..+..... +...
T Consensus 276 i~~~~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~ 355 (402)
T 1azs_C 276 IWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDG 355 (402)
T ss_dssp HHTCTTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTT
T ss_pred HHhcccCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhcccccc
Confidence 2 35789999999999854221 0 01111111 1111
Q ss_pred --CCCCcEEeecCCCCChHHHHHHhccchHH
Q 007334 265 --GFGDPIAISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 265 --~~~~~i~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
++ .++++||+++.||+++|+.+.+.+..
T Consensus 356 ~~~~-~~~~TSA~d~~nV~~vF~~v~~~I~~ 385 (402)
T 1azs_C 356 RHYC-YPHFTCAVDTENIRRVFNDCRDIIQR 385 (402)
T ss_dssp SSCE-EEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred Cccc-EEEEEEeecCcCHHHHHHHHHHHHHH
Confidence 11 34689999999999999998876644
No 425
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.72 E-value=1e-08 Score=109.26 Aligned_cols=120 Identities=18% Similarity=0.284 Sum_probs=69.3
Q ss_pred CCEEEEecCCCCchhHHHHHhhc------cceeeeccCCC----------------------CceeeeeE----EEEeee
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIR------RREALVYNTPD----------------------DHVTRDIR----EGLAKL 167 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~------~~~~~v~~~~~----------------------~~~T~~~~----~~~~~~ 167 (607)
...|+++|.+||||||+++.|.. .+...+...+. ..++++.. ......
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 35799999999999999999986 23433332211 00222210 000012
Q ss_pred CCeeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCC-c-EEEEecCCC
Q 007334 168 GDLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQI-K-PIVAMNKCE 245 (607)
Q Consensus 168 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~-p-~ilV~NK~D 245 (607)
.+..+.|+||||..... ....... . ....+..+|.+++|+|+..+.. .....+.+.. .. | ..+|+||+|
T Consensus 179 ~~~D~vIIDT~G~~~~~--~~l~~~l-~-~i~~~~~~d~vllVvda~~g~~--~~~~~~~~~~---~~~~i~gvVlnK~D 249 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEE--KGLLEEM-K-QIKEITNPDEIILVIDGTIGQQ--AGIQAKAFKE---AVGEIGSIIVTKLD 249 (432)
T ss_dssp SSCSEEEEECCCSCSSH--HHHHHHH-H-HTTSSSCCSEEEEEEEGGGGGG--HHHHHHHHHT---TSCSCEEEEEECSS
T ss_pred hCCCEEEEcCCCCcccc--HHHHHHH-H-HHHHHhcCcceeEEeeccccHH--HHHHHHHHhh---cccCCeEEEEeCCC
Confidence 56789999999987321 1111111 1 1122336899999999987632 1222233322 35 5 889999999
Q ss_pred ccc
Q 007334 246 SLH 248 (607)
Q Consensus 246 ~~~ 248 (607)
...
T Consensus 250 ~~~ 252 (432)
T 2v3c_C 250 GSA 252 (432)
T ss_dssp SCS
T ss_pred Ccc
Confidence 864
No 426
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.71 E-value=6.8e-09 Score=104.57 Aligned_cols=59 Identities=34% Similarity=0.473 Sum_probs=39.1
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETE 183 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~ 183 (607)
..+|+++|+||||||||+|+|++...+.+++.|+ +|++.... .. +..+.+|||||+...
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g--~T~~~~~~--~~-~~~~~l~DtpG~~~~ 178 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPG--ITTSQQWV--KV-GKELELLDTPGILWP 178 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC--------------CCE--EE-TTTEEEEECCCCCCS
T ss_pred CceEEEEecCCCchHHHHHHHhcCceeecCCCCC--eeeeeEEE--Ee-CCCEEEEECcCcCCC
Confidence 4689999999999999999999988778888888 88877532 22 457999999999843
No 427
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.69 E-value=4.9e-09 Score=108.81 Aligned_cols=113 Identities=9% Similarity=0.050 Sum_probs=74.4
Q ss_pred CeeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecC----------CCCCHhHHHHHHHHHhh-----CC
Q 007334 169 DLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVR----------SGLHPLDLEVGKWLRKH-----AP 233 (607)
Q Consensus 169 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s----------~~~~~~~~~~~~~l~~~-----~~ 233 (607)
...+.+|||+|++ .+...+..+++.++++|+|+|++ +..+.. ++..|+... ..
T Consensus 182 ~v~l~iwDtaGQe----------~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~--~~~~~~~~i~~~~~~~ 249 (354)
T 2xtz_A 182 GEVYRLFDVGGQR----------NERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMM--ETKELFDWVLKQPCFE 249 (354)
T ss_dssp --EEEEEEECCST----------TGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHH--HHHHHHHHHHTCGGGS
T ss_pred ceeeEEEECCCch----------hhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHH--HHHHHHHHHHhccccC
Confidence 4789999999998 45556677899999999999998 222222 234444332 35
Q ss_pred CCcEEEEecCCCcccCCc--C-------------------cHHHHHHHHHh----c----------CCC-CcEEeecCCC
Q 007334 234 QIKPIVAMNKCESLHNGT--G-------------------SLAGAAAESLM----L----------GFG-DPIAISAETG 277 (607)
Q Consensus 234 ~~p~ilV~NK~D~~~~~~--~-------------------~~~~~~~~~~~----~----------~~~-~~i~iSA~~g 277 (607)
+.|+++|+||+|+...+. . ..++....+.. + +.. .++++||++|
T Consensus 250 ~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~ 329 (354)
T 2xtz_A 250 KTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQ 329 (354)
T ss_dssp SCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCH
T ss_pred CCeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecc
Confidence 789999999999864321 0 01222222111 1 111 2479999999
Q ss_pred CChHHHHHHhccchHH
Q 007334 278 LGMTELYEALRPSVED 293 (607)
Q Consensus 278 ~gi~eL~~~i~~~l~~ 293 (607)
.||+++|+.+.+.+..
T Consensus 330 ~nV~~vF~~v~~~I~~ 345 (354)
T 2xtz_A 330 KLVKKTFKLVDETLRR 345 (354)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH
Confidence 9999999999876643
No 428
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.69 E-value=1.8e-08 Score=105.94 Aligned_cols=119 Identities=15% Similarity=0.173 Sum_probs=75.6
Q ss_pred EEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccch----------h-----------hHH--
Q 007334 365 VHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEE----------V-----------RAV-- 421 (607)
Q Consensus 365 ~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~----------~-----------~~~-- 421 (607)
..+.+++..+.||||+|+.+.+.. +..++++++++|+|+|.++ . ...
T Consensus 210 ~~~~~~~v~l~iwDtaGQe~~r~~----------w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~ 279 (402)
T 1azs_C 210 TKFQVDKVNFHMFDVGGQRDERRK----------WIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNN 279 (402)
T ss_dssp EEEEETTEEEEEEEECCSGGGGGG----------GGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTC
T ss_pred EEeecCCccceecccchhhhhhhh----------hHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhc
Confidence 456778899999999998655321 2356788999999999998 3 111
Q ss_pred --hcCCcEEEEEeCccCCCCcC---c---h----------------------HHHHHHHHhcHHHHHhhC----CCCCCC
Q 007334 422 --EEGRGLVVIVNKMDLLSGRQ---N---S----------------------ALYKRVKEAVPQEIQTVI----PQVTGI 467 (607)
Q Consensus 422 --~~~~p~ivv~NK~Dl~~~~~---~---~----------------------~~~~~~~~~~~~~~~~~~----~~~~~~ 467 (607)
..+.|+|||+||+||..... . . ...+....-+...+.... .....+
T Consensus 280 ~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~ 359 (402)
T 1azs_C 280 RWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYC 359 (402)
T ss_dssp TTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCE
T ss_pred ccCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCccc
Confidence 14689999999999843210 0 0 011111111111111110 111245
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
.++++||+++.||+++|..+.+.+.+
T Consensus 360 ~~~~TSA~d~~nV~~vF~~v~~~I~~ 385 (402)
T 1azs_C 360 YPHFTCAVDTENIRRVFNDCRDIIQR 385 (402)
T ss_dssp EEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeecCcCHHHHHHHHHHHHHH
Confidence 67899999999999999998876543
No 429
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.68 E-value=1.3e-08 Score=104.59 Aligned_cols=126 Identities=13% Similarity=0.116 Sum_probs=85.5
Q ss_pred eeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCC-------CCCHhH-HHHHHHH
Q 007334 157 TRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRS-------GLHPLD-LEVGKWL 228 (607)
Q Consensus 157 T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~-------~~~~~~-~~~~~~l 228 (607)
|.......+..++..+.+|||+|++ .+...+..+++.++++|+|+|+++ ..+... .+...|+
T Consensus 148 TiGi~~~~~~~~~v~l~iwDtaGQe----------~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~ 217 (340)
T 4fid_A 148 TTGIHEYDFVVKDIPFHLIDVGGQR----------SERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVF 217 (340)
T ss_dssp CCSCEEEEEESSSCEEEEEECCSCH----------HHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHH
T ss_pred eeeeEEEEEEeeeeeeccccCCCcc----------cccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHH
Confidence 4445556667788999999999998 777888999999999999999982 111111 1233443
Q ss_pred Hhh-----CCCCcEEEEecCCCcccCCc---------------CcHHHHHHHHH-hc-----------------------
Q 007334 229 RKH-----APQIKPIVAMNKCESLHNGT---------------GSLAGAAAESL-ML----------------------- 264 (607)
Q Consensus 229 ~~~-----~~~~p~ilV~NK~D~~~~~~---------------~~~~~~~~~~~-~~----------------------- 264 (607)
... ..+.|+++++||+|+...+. ...++....+. .+
T Consensus 218 ~~i~~~~~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~ 297 (340)
T 4fid_A 218 KDIMTNEFLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGA 297 (340)
T ss_dssp HHHHHCGGGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC------------
T ss_pred HHHhhhhccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccc
Confidence 332 35789999999999865210 11222222111 11
Q ss_pred ---CCCCcEEeecCCCCChHHHHHHhccchHH
Q 007334 265 ---GFGDPIAISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 265 ---~~~~~i~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
.+ .++++||+++.+|..+|+.+.+.+-.
T Consensus 298 ~~~~i-y~h~TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 298 VNEKV-YTNPTNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp --CEE-EEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred cCcce-EEEEEEeeCcHHHHHHHHHHHHHHHH
Confidence 11 35789999999999999998887654
No 430
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.68 E-value=2e-08 Score=110.42 Aligned_cols=61 Identities=26% Similarity=0.342 Sum_probs=48.5
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEE-------cCeEEEEEecCCCcccc
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEY-------QGRTVYLVDTAGWLQRE 386 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~-------~~~~~~liDTpG~~~~~ 386 (607)
..+|+|+|.||||||||+|+|+|..... +.+++|++...+.+.| .+..+.|+||||+.+..
T Consensus 38 ~~~VaivG~pnvGKStLiN~L~g~~~~~--~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~ 105 (592)
T 1f5n_A 38 MVVVAIVGLYRTGKSYLMNKLAGKKKGF--SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVE 105 (592)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTCSSCS--CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGG
T ss_pred CcEEEEECCCCCCHHHHHHhHcCCCCcc--ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCccc
Confidence 3689999999999999999999986433 6677777766655544 56789999999998753
No 431
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.64 E-value=4e-08 Score=100.01 Aligned_cols=124 Identities=19% Similarity=0.240 Sum_probs=74.3
Q ss_pred HHHHHhhcCCcee-ecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccch
Q 007334 339 TLLNALLQEDRVL-VGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEE 417 (607)
Q Consensus 339 slin~l~~~~~~~-~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~ 417 (607)
+|+.+++... +. ....|.+. |.+...+..++ .+.+||| +.++.. + ...+++++|++|+|+|+++
T Consensus 32 sl~~~~~~~~-f~~~~~~pTiG-d~~~~~~~~~~-~~~iwD~--qer~~~------l----~~~~~~~ad~vilV~D~~~ 96 (301)
T 1u0l_A 32 ERILCKLRGK-FRLQNLKIYVG-DRVEYTPDETG-SGVIENV--LHRKNL------L----TKPHVANVDQVILVVTVKM 96 (301)
T ss_dssp CEEEEEECGG-GTTTTCCCCTT-CEEEEECCCSS-SEEEEEE--CCCSCE------E----TTTTEESCCEEEEEECSST
T ss_pred cEEEEEEccc-ccccCCCCCCc-cEEEEEEcCCC-eEEEEEE--ccccce------e----eccccccCCEEEEEEeCCC
Confidence 5666666432 22 11222222 44433332333 7899999 433321 1 1246789999999999987
Q ss_pred h------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHHHH
Q 007334 418 V------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMH 485 (607)
Q Consensus 418 ~------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~ 485 (607)
+ .....++|+++|+||+||.+.... +... ++.+.+... .+++++||++|.|++++|.
T Consensus 97 ~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~~~~~v----~~~~-----~~~~~~~~~--~~~~~~SAktg~gv~~lf~ 165 (301)
T 1u0l_A 97 PETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDL----RKVR-----ELEEIYSGL--YPIVKTSAKTGMGIEELKE 165 (301)
T ss_dssp TCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHH----HHHH-----HHHHHHTTT--SCEEECCTTTCTTHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcCCchhH----HHHH-----HHHHHHhhh--CcEEEEECCCCcCHHHHHH
Confidence 5 112258999999999999754210 1111 111112211 6899999999999999997
Q ss_pred HHH
Q 007334 486 QVI 488 (607)
Q Consensus 486 ~i~ 488 (607)
.+.
T Consensus 166 ~l~ 168 (301)
T 1u0l_A 166 YLK 168 (301)
T ss_dssp HHS
T ss_pred Hhc
Confidence 664
No 432
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.63 E-value=9.3e-08 Score=101.41 Aligned_cols=139 Identities=25% Similarity=0.321 Sum_probs=79.5
Q ss_pred CCceEEEEcCCCCchhHHHHHhh------cCCceeecCC----------------CCce-------eeeEEE------EE
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALL------QEDRVLVGPE----------------AGLT-------RDSVRV------HF 367 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~------~~~~~~~~~~----------------~gtT-------~~~~~~------~~ 367 (607)
.+..|+++|.+||||||++..|. |.....+..- .++. .++... ..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 35678999999999999999887 3332222210 1110 000000 00
Q ss_pred EEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh-------hHHh-cCCcEEEEEeCccCCCC
Q 007334 368 EYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV-------RAVE-EGRGLVVIVNKMDLLSG 439 (607)
Q Consensus 368 ~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~-------~~~~-~~~p~ivv~NK~Dl~~~ 439 (607)
...+..+.|+||||..... .+.+...........+|.+++|+|++.+ ..+. ...+..+|+||+|....
T Consensus 179 ~~~~~DvVIIDTaGrl~~d----~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f~~~~~i~gVIlTKlD~~~~ 254 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKED----KALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDGSAK 254 (443)
T ss_dssp HHTTCSEEEEECCCCSSCC----HHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHSCTTEEEEEECCSSCSS
T ss_pred HhCCCCEEEEECCCcccch----HHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHHHhhCCCeEEEEECCCCccc
Confidence 0134689999999964321 1122223333445578999999999876 2222 33456799999998754
Q ss_pred cCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHH
Q 007334 440 RQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIA 482 (607)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~ 482 (607)
... .. .+.. ..+.|+.+++. |+++++
T Consensus 255 gG~------~l-----s~~~----~~g~PI~fig~--Ge~vdd 280 (443)
T 3dm5_A 255 GGG------AL-----SAVA----ATGAPIKFIGT--GEKIDD 280 (443)
T ss_dssp HHH------HH-----HHHH----TTCCCEEEEEC--SSSTTC
T ss_pred ccH------HH-----HHHH----HHCCCEEEEEc--CCChHH
Confidence 211 00 1111 24779988886 776653
No 433
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.62 E-value=2.2e-07 Score=98.09 Aligned_cols=158 Identities=13% Similarity=0.171 Sum_probs=85.7
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCc----eeecCCCCceeeeEEEEEEEcC-eEEEEEecCCCcccccccCcchhHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDR----VLVGPEAGLTRDSVRVHFEYQG-RTVYLVDTAGWLQREKEKGPASLSVMQ 398 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~----~~~~~~~gtT~~~~~~~~~~~~-~~~~liDTpG~~~~~~~~~~~~~~~~~ 398 (607)
...++++|++|+|||||+|.|+|... .+......+|+..+ .+.... ..+.++|+||+.... ...+.+ ..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~--v~q~~~~~~ltv~D~~g~~~~~--~~~~~~--L~ 142 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERH--PYKHPNIPNVVFWDLPGIGSTN--FPPDTY--LE 142 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCE--EEECSSCTTEEEEECCCGGGSS--CCHHHH--HH
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEE--eccccccCCeeehHhhcccchH--HHHHHH--HH
Confidence 35799999999999999999998421 11111112233211 111111 257899999975321 111111 11
Q ss_pred HHHHHhhccEEEEEeccc--hh-------hHHhcCCcEEEEEeCccCC---------CCcCchHHHHHHHHhcHHHHHhh
Q 007334 399 SRKNLMRAHVVALVLDAE--EV-------RAVEEGRGLVVIVNKMDLL---------SGRQNSALYKRVKEAVPQEIQTV 460 (607)
Q Consensus 399 ~~~~i~~ad~~llViD~~--~~-------~~~~~~~p~ivv~NK~Dl~---------~~~~~~~~~~~~~~~~~~~~~~~ 460 (607)
.-.+...+..++ ++.. .. .....++|+++|.||.|+. +.....+..+.+.+...+.+.+.
T Consensus 143 -~~~L~~~~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~ 220 (413)
T 1tq4_A 143 -KMKFYEYDFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN 220 (413)
T ss_dssp -HTTGGGCSEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred -HcCCCccCCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 112334566665 7876 22 2233589999999999975 11112222222222111111111
Q ss_pred CCCCCCCCEEEccc--CCCCCHHHHHHHHHHHH
Q 007334 461 IPQVTGIPVVFTSA--LEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 461 ~~~~~~~~~v~iSA--~~g~gv~~l~~~i~~~~ 491 (607)
......++.+|+ ..+.|++++.+.+.+.+
T Consensus 221 --g~~~~~iiliSsh~l~~~~~e~L~d~I~~~L 251 (413)
T 1tq4_A 221 --GIAEPPIFLLSNKNVCHYDFPVLMDKLISDL 251 (413)
T ss_dssp --TCSSCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred --CCCCCcEEEEecCcCCccCHHHHHHHHHHhC
Confidence 012347899999 66778999999987764
No 434
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.60 E-value=3.9e-08 Score=102.00 Aligned_cols=113 Identities=15% Similarity=0.173 Sum_probs=68.7
Q ss_pred CeEEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccc----------hh-----------hHH----hcCC
Q 007334 371 GRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAE----------EV-----------RAV----EEGR 425 (607)
Q Consensus 371 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~----------~~-----------~~~----~~~~ 425 (607)
...+.||||+|+.+.... ...+++++|++|+|+|.+ +. ... ..+.
T Consensus 182 ~v~l~iwDtaGQe~~r~~----------~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~ 251 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNERRK----------WIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKT 251 (354)
T ss_dssp --EEEEEEECCSTTGGGG----------TGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSC
T ss_pred ceeeEEEECCCchhhhHH----------HHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCC
Confidence 467899999998655321 234677899999999997 22 111 2478
Q ss_pred cEEEEEeCccCCCCcCc-------------------hHHHHHHHHhcHHHHHhh---C--CC--CCCCCEEEcccCCCCC
Q 007334 426 GLVVIVNKMDLLSGRQN-------------------SALYKRVKEAVPQEIQTV---I--PQ--VTGIPVVFTSALEGRG 479 (607)
Q Consensus 426 p~ivv~NK~Dl~~~~~~-------------------~~~~~~~~~~~~~~~~~~---~--~~--~~~~~~v~iSA~~g~g 479 (607)
|+|||+||+|+.+.... ....+...+-+...+... - .. ...+.++++||+++.|
T Consensus 252 piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~n 331 (354)
T 2xtz_A 252 SFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKL 331 (354)
T ss_dssp EEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHH
T ss_pred eEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchh
Confidence 99999999998532100 001122111111111111 0 00 1234578999999999
Q ss_pred HHHHHHHHHHHHHH
Q 007334 480 RIAVMHQVIDTYQK 493 (607)
Q Consensus 480 v~~l~~~i~~~~~~ 493 (607)
|+++|+.+.+.+.+
T Consensus 332 V~~vF~~v~~~I~~ 345 (354)
T 2xtz_A 332 VKKTFKLVDETLRR 345 (354)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887643
No 435
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.60 E-value=4.6e-07 Score=96.10 Aligned_cols=148 Identities=14% Similarity=0.159 Sum_probs=85.8
Q ss_pred CCEEEEecCCCCchhHHHHHhh------ccceeeeccCCCCce------------eeeeEEE---------------Eee
Q 007334 120 LPTVMIIGRPNVGKSALFNRLI------RRREALVYNTPDDHV------------TRDIREG---------------LAK 166 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~------~~~~~~v~~~~~~~~------------T~~~~~~---------------~~~ 166 (607)
...|+++|.+||||||+++.|. |.+...+...+.... ....... ...
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 4589999999999999999997 444444432221000 0000000 000
Q ss_pred eCCeeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCc
Q 007334 167 LGDLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCES 246 (607)
Q Consensus 167 ~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~ 246 (607)
..+..+.|+||||..... .....+. .. ......+|.+++|+|++.+... ....+.+.+. -.+..+|+||+|.
T Consensus 180 ~~~~DvVIIDTaGrl~~d--~~lm~el-~~-i~~~~~pd~vlLVvDA~~gq~a--~~~a~~f~~~--~~i~gVIlTKlD~ 251 (443)
T 3dm5_A 180 SKGVDIIIVDTAGRHKED--KALIEEM-KQ-ISNVIHPHEVILVIDGTIGQQA--YNQALAFKEA--TPIGSIIVTKLDG 251 (443)
T ss_dssp HTTCSEEEEECCCCSSCC--HHHHHHH-HH-HHHHHCCSEEEEEEEGGGGGGH--HHHHHHHHHS--CTTEEEEEECCSS
T ss_pred hCCCCEEEEECCCcccch--HHHHHHH-HH-HHHhhcCceEEEEEeCCCchhH--HHHHHHHHhh--CCCeEEEEECCCC
Confidence 134789999999976322 1222222 11 2334467999999999875332 3344555443 2356799999998
Q ss_pred ccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCChHH
Q 007334 247 LHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTE 282 (607)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi~e 282 (607)
... ...........+. ++.+++. |+++++
T Consensus 252 ~~~----gG~~ls~~~~~g~-PI~fig~--Ge~vdd 280 (443)
T 3dm5_A 252 SAK----GGGALSAVAATGA-PIKFIGT--GEKIDD 280 (443)
T ss_dssp CSS----HHHHHHHHHTTCC-CEEEEEC--SSSTTC
T ss_pred ccc----ccHHHHHHHHHCC-CEEEEEc--CCChHH
Confidence 653 1223333445555 6667774 888755
No 436
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.58 E-value=1.2e-07 Score=94.73 Aligned_cols=117 Identities=18% Similarity=0.279 Sum_probs=64.2
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeec-------CCCCcee-eeEEEEEEEcC--eEEEEEecCCCcccccccC----
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVG-------PEAGLTR-DSVRVHFEYQG--RTVYLVDTAGWLQREKEKG---- 390 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~-------~~~gtT~-~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~---- 390 (607)
++++++|++|+|||||+|.|+|......+ +.+.++. ..+...+...+ ..+.++|++|+........
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 68999999999999999999975322111 1122221 11111111112 2678999999865421111
Q ss_pred cchhHHHHHHHHH--------------hhccEEEEEeccc-hh---------hHHhcCCcEEEEEeCccCCCCcC
Q 007334 391 PASLSVMQSRKNL--------------MRAHVVALVLDAE-EV---------RAVEEGRGLVVIVNKMDLLSGRQ 441 (607)
Q Consensus 391 ~~~~~~~~~~~~i--------------~~ad~~llViD~~-~~---------~~~~~~~p~ivv~NK~Dl~~~~~ 441 (607)
...+........+ .+++++++++|.. .+ ..+...+++|+|+||+|.....+
T Consensus 83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~~~vI~Vi~K~D~lt~~e 157 (270)
T 3sop_A 83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKVVNIIPVIAKADTMTLEE 157 (270)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTTSEEEEEETTGGGSCHHH
T ss_pred HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhcCcEEEEEeccccCCHHH
Confidence 1111111111221 2369999999964 32 22233489999999999887533
No 437
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.50 E-value=4.3e-08 Score=97.60 Aligned_cols=58 Identities=33% Similarity=0.507 Sum_probs=39.6
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETE 183 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~ 183 (607)
.+|+++|.||||||||+|+|++.....++..+| +|+..... . .+..+.+|||||+...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g--~T~~~~~~--~-~~~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPG--ITKGIQWF--S-LENGVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC------------CCSCEE--E-CTTSCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCC--CccceEEE--E-eCCCEEEEECCCcccC
Confidence 689999999999999999999988766777787 77766432 2 2457999999999853
No 438
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.45 E-value=7.7e-07 Score=94.34 Aligned_cols=148 Identities=20% Similarity=0.212 Sum_probs=84.5
Q ss_pred CCEEEEecCCCCchhHHHHHhh------ccceeeeccCCCCc--------------eeeeeE-------------EEEee
Q 007334 120 LPTVMIIGRPNVGKSALFNRLI------RRREALVYNTPDDH--------------VTRDIR-------------EGLAK 166 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~------~~~~~~v~~~~~~~--------------~T~~~~-------------~~~~~ 166 (607)
...|+++|.+||||||++..|. +.+...+...+... +..... .....
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~ 176 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV 176 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence 3579999999999999999997 44443332111100 000000 00001
Q ss_pred eCCeeEEEecCCCCcc--ccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCC
Q 007334 167 LGDLRFKVLDSAGLET--EATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKC 244 (607)
Q Consensus 167 ~~~~~~~liDTpG~~~--~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~ 244 (607)
..+..+.|+||||... ..+ ....+. ......+ ..|.+++|+|+..+.. ...+++.+.+. -.+..+|+||+
T Consensus 177 ~~~~DvvIIDTaGr~~~~~d~--~lm~el-~~i~~~~-~pd~vlLVlDa~~gq~--a~~~a~~f~~~--~~~~gVIlTKl 248 (433)
T 3kl4_A 177 KNKMDIIIVDTAGRHGYGEET--KLLEEM-KEMYDVL-KPDDVILVIDASIGQK--AYDLASRFHQA--SPIGSVIITKM 248 (433)
T ss_dssp TTTCSEEEEEECCCSSSCCTT--HHHHHH-HHHHHHH-CCSEEEEEEEGGGGGG--GHHHHHHHHHH--CSSEEEEEECG
T ss_pred hcCCCEEEEECCCCccccCCH--HHHHHH-HHHHHhh-CCcceEEEEeCccchH--HHHHHHHHhcc--cCCcEEEEecc
Confidence 1367899999999764 222 122222 2222222 5689999999986532 23455555544 24678999999
Q ss_pred CcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCChHH
Q 007334 245 ESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTE 282 (607)
Q Consensus 245 D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi~e 282 (607)
|.... ...........+. ++.+++. |+++++
T Consensus 249 D~~a~----~G~als~~~~~g~-Pi~fig~--Ge~v~d 279 (433)
T 3kl4_A 249 DGTAK----GGGALSAVVATGA-TIKFIGT--GEKIDE 279 (433)
T ss_dssp GGCSC----HHHHHHHHHHHTC-EEEEEEC--CSSSSC
T ss_pred ccccc----chHHHHHHHHHCC-CEEEEEC--CCChHh
Confidence 97643 2233334444565 6667775 887753
No 439
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.33 E-value=1.4e-06 Score=92.35 Aligned_cols=139 Identities=24% Similarity=0.266 Sum_probs=76.2
Q ss_pred CceEEEEcCCCCchhHHHHHhh------cCCceeec----------------CCCCcee-------eeEE------EEEE
Q 007334 324 PLQLAIVGRPNVGKSTLLNALL------QEDRVLVG----------------PEAGLTR-------DSVR------VHFE 368 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~------~~~~~~~~----------------~~~gtT~-------~~~~------~~~~ 368 (607)
+..|+++|.+||||||++..|. |.....+. ...|... ++.. ....
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~ 176 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV 176 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence 5568899999999999999887 32222211 1111110 0000 0000
Q ss_pred EcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh-------hHHh-cCCcEEEEEeCccCCCCc
Q 007334 369 YQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV-------RAVE-EGRGLVVIVNKMDLLSGR 440 (607)
Q Consensus 369 ~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~-------~~~~-~~~p~ivv~NK~Dl~~~~ 440 (607)
..+..+.|+||||..... .....+...........+|.+++|+|++.+ ..+. .-.+..+|+||+|.....
T Consensus 177 ~~~~DvvIIDTaGr~~~~--~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~~~~~gVIlTKlD~~a~~ 254 (433)
T 3kl4_A 177 KNKMDIIIVDTAGRHGYG--EETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQASPIGSVIITKMDGTAKG 254 (433)
T ss_dssp TTTCSEEEEEECCCSSSC--CTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHHCSSEEEEEECGGGCSCH
T ss_pred hcCCCEEEEECCCCcccc--CCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhcccCCcEEEEecccccccc
Confidence 135678999999954310 011111112222223357999999999876 1222 335688999999986442
Q ss_pred CchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHH
Q 007334 441 QNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRI 481 (607)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~ 481 (607)
. ..+. .. . ..+.|+.+++. |++++
T Consensus 255 G--~als----~~-----~----~~g~Pi~fig~--Ge~v~ 278 (433)
T 3kl4_A 255 G--GALS----AV-----V----ATGATIKFIGT--GEKID 278 (433)
T ss_dssp H--HHHH----HH-----H----HHTCEEEEEEC--CSSSS
T ss_pred h--HHHH----HH-----H----HHCCCEEEEEC--CCChH
Confidence 1 1111 11 0 12679988886 77764
No 440
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.26 E-value=2.8e-06 Score=85.99 Aligned_cols=148 Identities=16% Similarity=0.168 Sum_probs=82.0
Q ss_pred CEEEEecCCCCchhHHHHHhh------ccceeeeccCCCCcee------------eeeEEE---------------Eeee
Q 007334 121 PTVMIIGRPNVGKSALFNRLI------RRREALVYNTPDDHVT------------RDIREG---------------LAKL 167 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~------~~~~~~v~~~~~~~~T------------~~~~~~---------------~~~~ 167 (607)
..|+++|.+|+||||+++.|. +.+...+...+....+ .+.... ....
T Consensus 99 ~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~~ 178 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLS 178 (297)
T ss_dssp EEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHHh
Confidence 478999999999999999987 3344333322110000 000000 0011
Q ss_pred CCeeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCc-EEEEecCCCc
Q 007334 168 GDLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIK-PIVAMNKCES 246 (607)
Q Consensus 168 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p-~ilV~NK~D~ 246 (607)
.+..+.|+||||.......+....+.. . ...+..+|.+++|+|+..+ .......+.+.+ ..+ ..+|+||+|.
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~-~-i~~~~~~d~vllVvda~~g--~~~~~~~~~~~~---~~~i~gvVlnk~D~ 251 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMK-N-IYEAIKPDEVTLVIDASIG--QKAYDLASKFNQ---ASKIGTIIITKMDG 251 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHH-H-HHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHH---TCTTEEEEEECGGG
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHH-H-HHHHhcCCEEEEEeeCCch--HHHHHHHHHHHh---hCCCCEEEEeCCCC
Confidence 566899999999874101111111111 1 1234578999999999754 222233333333 345 6789999997
Q ss_pred ccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCChHH
Q 007334 247 LHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTE 282 (607)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi~e 282 (607)
... ...........+. ++.+++ .|+++++
T Consensus 252 ~~~----~g~~~~~~~~~~~-pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 252 TAK----GGGALSAVAATGA-TIKFIG--TGEKIDE 280 (297)
T ss_dssp CTT----HHHHHHHHHTTTC-CEEEEE--CSSSTTC
T ss_pred Ccc----hHHHHHHHHHHCc-CEEEEe--CCCChhh
Confidence 642 2223334445555 566665 6777754
No 441
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.16 E-value=2.3e-06 Score=80.69 Aligned_cols=99 Identities=14% Similarity=-0.095 Sum_probs=62.8
Q ss_pred HHHHHHHHHhhccCEEEEEEecCCCCCHhH-HHH---HHHHHhh--CCCCcEEEEecCC-CcccCCcCcHHHHHHHH--H
Q 007334 192 RTAGMTANVLAKTQFAIFMIDVRSGLHPLD-LEV---GKWLRKH--APQIKPIVAMNKC-ESLHNGTGSLAGAAAES--L 262 (607)
Q Consensus 192 ~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~-~~~---~~~l~~~--~~~~p~ilV~NK~-D~~~~~~~~~~~~~~~~--~ 262 (607)
.....+..|+.++|++|||+|.++....+- .++ ...|.+. ..+.|+++.+||. |+...- ...+....+ .
T Consensus 114 klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Am--s~~EI~e~L~L~ 191 (227)
T 3l82_B 114 SVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRM--PCFYLAHELHLN 191 (227)
T ss_dssp ---CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBC--CHHHHHHHTTGG
T ss_pred HHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCC--CHHHHHHHcCCc
Confidence 445667789999999999999988633222 223 2333332 2478999999996 664432 222221111 1
Q ss_pred hc-CCCCcEEeecCCCCChHHHHHHhccchH
Q 007334 263 ML-GFGDPIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 263 ~~-~~~~~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
.+ ..+.+..|||.+|+|+.|-+++|.+.+.
T Consensus 192 ~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 192 LLNHPWLVQDTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp GGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred CCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence 11 1235689999999999999999998764
No 442
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.14 E-value=9.4e-07 Score=89.83 Aligned_cols=77 Identities=21% Similarity=0.154 Sum_probs=53.1
Q ss_pred HHhhccEEEEEeccchh------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCE
Q 007334 402 NLMRAHVVALVLDAEEV------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPV 469 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (607)
++.++|++++|+|++++ .....++|+++|+||+|+.+.... ...+... +..+. .+.++
T Consensus 76 ~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v-~~~~~~~-----~~~~~----~g~~~ 145 (302)
T 2yv5_A 76 KVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEK-KELERWI-----SIYRD----AGYDV 145 (302)
T ss_dssp EEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHH-HHHHHHH-----HHHHH----TTCEE
T ss_pred HHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCcccc-HHHHHHH-----HHHHH----CCCeE
Confidence 67889999999999865 112368999999999999764210 0011111 11111 25689
Q ss_pred EEcccCCCCCHHHHHHHHH
Q 007334 470 VFTSALEGRGRIAVMHQVI 488 (607)
Q Consensus 470 v~iSA~~g~gv~~l~~~i~ 488 (607)
+++||++|.|++++++.+.
T Consensus 146 ~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 146 LKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp EECCTTTCTTHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHhhcc
Confidence 9999999999999987654
No 443
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.13 E-value=2.8e-06 Score=85.93 Aligned_cols=140 Identities=23% Similarity=0.243 Sum_probs=77.4
Q ss_pred CceEEEEcCCCCchhHHHHHhhc------CCceeecCCC---Cc-----------eeeeEEE---------------EEE
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQ------EDRVLVGPEA---GL-----------TRDSVRV---------------HFE 368 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~------~~~~~~~~~~---gt-----------T~~~~~~---------------~~~ 368 (607)
+..++++|.+|+||||++..|.+ .....+..-+ +. ..+.+.. .+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 45688999999999999998873 2222211110 00 0000000 000
Q ss_pred EcCeEEEEEecCCCcccccccCcchh-HHHHHHHHHhhccEEEEEeccchh-------hHHhcCCc-EEEEEeCccCCCC
Q 007334 369 YQGRTVYLVDTAGWLQREKEKGPASL-SVMQSRKNLMRAHVVALVLDAEEV-------RAVEEGRG-LVVIVNKMDLLSG 439 (607)
Q Consensus 369 ~~~~~~~liDTpG~~~~~~~~~~~~~-~~~~~~~~i~~ad~~llViD~~~~-------~~~~~~~p-~ivv~NK~Dl~~~ 439 (607)
..+..+.|+||||..... ..+.+ ..+........+|.+++|+|++.+ ..+....| ..+|+||+|....
T Consensus 178 ~~~~D~ViIDTpg~~~~~---~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~~~~~~~~~~i~gvVlnk~D~~~~ 254 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYG---EEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQASKIGTIIITKMDGTAK 254 (297)
T ss_dssp HTTCSEEEEECCCSCCTT---CHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHTCTTEEEEEECGGGCTT
T ss_pred hCCCCEEEEeCCCCcccc---cHHHHHHHHHHHHHHhcCCEEEEEeeCCchHHHHHHHHHHHhhCCCCEEEEeCCCCCcc
Confidence 145679999999965410 00111 111122334479999999999765 22233566 7889999997543
Q ss_pred cCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHH
Q 007334 440 RQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAV 483 (607)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l 483 (607)
.. .+. .+.. ..+.|+.+++ .|++++++
T Consensus 255 ~g------~~~-----~~~~----~~~~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 255 GG------GAL-----SAVA----ATGATIKFIG--TGEKIDEL 281 (297)
T ss_dssp HH------HHH-----HHHH----TTTCCEEEEE--CSSSTTCE
T ss_pred hH------HHH-----HHHH----HHCcCEEEEe--CCCChhhc
Confidence 11 010 1111 2367998887 67777543
No 444
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.12 E-value=1.8e-05 Score=88.16 Aligned_cols=78 Identities=9% Similarity=0.185 Sum_probs=42.5
Q ss_pred eeEEEecCCCCccccC---chhHHHHHHHHHHHHhhcc-CEEEEEEecCCCCCHhH-HHHHHHHHhhCCCCcEEEEecCC
Q 007334 170 LRFKVLDSAGLETEAT---SGSILDRTAGMTANVLAKT-QFAIFMIDVRSGLHPLD-LEVGKWLRKHAPQIKPIVAMNKC 244 (607)
Q Consensus 170 ~~~~liDTpG~~~~~~---~~~~~~~~~~~~~~~~~~a-d~vl~VvD~s~~~~~~~-~~~~~~l~~~~~~~p~ilV~NK~ 244 (607)
..+.++|.||+..... ..............++... .+++.+++........+ ..+++.+... +.+.|+|+||.
T Consensus 147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~--g~rtI~VlTK~ 224 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPE--GDRTIGILTKP 224 (608)
T ss_dssp CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSS--CCSEEEEEECG
T ss_pred CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhc--CCceEEEecch
Confidence 3589999999874321 1122234455555665554 46666666543333222 2334444332 67999999999
Q ss_pred CcccC
Q 007334 245 ESLHN 249 (607)
Q Consensus 245 D~~~~ 249 (607)
|+...
T Consensus 225 Dlv~~ 229 (608)
T 3szr_A 225 DLVDK 229 (608)
T ss_dssp GGSSS
T ss_pred hhcCc
Confidence 98854
No 445
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.96 E-value=2.3e-05 Score=83.25 Aligned_cols=60 Identities=17% Similarity=0.155 Sum_probs=41.5
Q ss_pred CCEEEEecCCCCchhHHHHHhhcc---------------ceeeeccCCCCceeeeeEEEEeeeC-----------CeeEE
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRR---------------REALVYNTPDDHVTRDIREGLAKLG-----------DLRFK 173 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~---------------~~~~v~~~~~~~~T~~~~~~~~~~~-----------~~~~~ 173 (607)
...|+|+|.+|+|||||+|+|++. .....+..+ +|+..+.|...+. +..+.
T Consensus 67 v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~---t~~~~T~GIw~~~~p~~~~~~~~~~~~vv 143 (447)
T 3q5d_A 67 VVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRG---GSERETTGIQIWSEIFLINKPDGKKVAVL 143 (447)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCC---SSCCCCCEEEEESSCEEEECSSSCEEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCC---CCCCceeEEEEecCccccccCCCCcceEE
Confidence 568999999999999999999975 222222111 4455555544442 35699
Q ss_pred EecCCCCcc
Q 007334 174 VLDSAGLET 182 (607)
Q Consensus 174 liDTpG~~~ 182 (607)
++||||+..
T Consensus 144 llDTeG~~~ 152 (447)
T 3q5d_A 144 LMDTQGTFD 152 (447)
T ss_dssp EEEEECCCS
T ss_pred EEcCCcccc
Confidence 999999873
No 446
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.81 E-value=4.9e-05 Score=80.84 Aligned_cols=113 Identities=22% Similarity=0.220 Sum_probs=64.2
Q ss_pred CCceEEEEcCCCCchhHHHHHhh-------cCCceeecCCCCc--e------------eeeEEE---------------E
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALL-------QEDRVLVGPEAGL--T------------RDSVRV---------------H 366 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~-------~~~~~~~~~~~gt--T------------~~~~~~---------------~ 366 (607)
.+..|+++|.+||||||++..|. |.....+..-+.. . .+.+.. .
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 34578899999999999999887 4332222111100 0 010000 0
Q ss_pred EEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh-------hHHhcCCc-EEEEEeCccCCC
Q 007334 367 FEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV-------RAVEEGRG-LVVIVNKMDLLS 438 (607)
Q Consensus 367 ~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~-------~~~~~~~p-~ivv~NK~Dl~~ 438 (607)
+...+..+.|+||||..... ............+..+|.+++|+|++.+ ..+....+ .-+|+||+|...
T Consensus 179 ~~~~~~D~VIIDTpG~l~~~----~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~~~~~f~~~l~i~gvVlnK~D~~~ 254 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGRLHVD----EAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDA 254 (433)
T ss_dssp HHHTTCSEEEEECCCCCTTC----HHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHHHHHHHHHHSCCCCEEEECTTSSS
T ss_pred HHhCCCCEEEEECCCccccc----HHHHHHHHHHHHhhcCcceeEEeecchhHHHHHHHHHHhccCCCeEEEEecCCCCc
Confidence 01145689999999954321 1111112223344478999999999865 22233345 357999999754
Q ss_pred C
Q 007334 439 G 439 (607)
Q Consensus 439 ~ 439 (607)
.
T Consensus 255 ~ 255 (433)
T 2xxa_A 255 R 255 (433)
T ss_dssp C
T ss_pred c
Confidence 3
No 447
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.78 E-value=1.7e-05 Score=78.44 Aligned_cols=98 Identities=14% Similarity=-0.095 Sum_probs=63.7
Q ss_pred HHHHHHHHhhccCEEEEEEecCCCCCHhH-HH---HHHHHHhh--CCCCcEEEEecC-CCcccCCcCcHHHHHHHH--Hh
Q 007334 193 TAGMTANVLAKTQFAIFMIDVRSGLHPLD-LE---VGKWLRKH--APQIKPIVAMNK-CESLHNGTGSLAGAAAES--LM 263 (607)
Q Consensus 193 ~~~~~~~~~~~ad~vl~VvD~s~~~~~~~-~~---~~~~l~~~--~~~~p~ilV~NK-~D~~~~~~~~~~~~~~~~--~~ 263 (607)
....+..|+.++|++|||||+++....+. .+ +...+.+. ..+.|+++.+|| .|+...-. ..+....+ ..
T Consensus 200 lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams--~~EI~e~L~L~~ 277 (312)
T 3l2o_B 200 VIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMP--CFYLAHELHLNL 277 (312)
T ss_dssp CCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCC--HHHHHHHTTGGG
T ss_pred HHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCC--HHHHHHHcCCcc
Confidence 34566789999999999999988653222 22 22445332 357899999997 57754322 22221111 11
Q ss_pred c-CCCCcEEeecCCCCChHHHHHHhccchH
Q 007334 264 L-GFGDPIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 264 ~-~~~~~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
+ ....+..+||.+|+|+.|-+++|.+.+.
T Consensus 278 l~r~W~Iq~csA~tGeGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 278 LNHPWLVQDTEAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp GCSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred CCCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence 1 1225689999999999999999987653
No 448
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.77 E-value=6.6e-05 Score=76.86 Aligned_cols=147 Identities=16% Similarity=0.203 Sum_probs=80.1
Q ss_pred CEEEEecCCCCchhHHHHHhhcc------ceeeeccCCCCce--------eeeeEEEEe-------------------ee
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRR------REALVYNTPDDHV--------TRDIREGLA-------------------KL 167 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~------~~~~v~~~~~~~~--------T~~~~~~~~-------------------~~ 167 (607)
-.|+|+|.+|||||||++.|.+. +............ .+......+ ..
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~~~ 209 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAKA 209 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHHHh
Confidence 47999999999999999999853 2222211110000 000000000 01
Q ss_pred CCeeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcc
Q 007334 168 GDLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESL 247 (607)
Q Consensus 168 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~ 247 (607)
.+..+.++||+|...... ....+.. .... .-..|-.++|+|+..+. .-.+.++.+.+. ....++++||.|..
T Consensus 210 ~~~d~vliDtaG~~~~~~--~l~~eL~-~i~r-al~~de~llvLDa~t~~--~~~~~~~~~~~~--~~it~iilTKlD~~ 281 (328)
T 3e70_C 210 RGIDVVLIDTAGRSETNR--NLMDEMK-KIAR-VTKPNLVIFVGDALAGN--AIVEQARQFNEA--VKIDGIILTKLDAD 281 (328)
T ss_dssp HTCSEEEEEECCSCCTTT--CHHHHHH-HHHH-HHCCSEEEEEEEGGGTT--HHHHHHHHHHHH--SCCCEEEEECGGGC
T ss_pred ccchhhHHhhccchhHHH--HHHHHHH-HHHH-HhcCCCCEEEEecHHHH--HHHHHHHHHHHh--cCCCEEEEeCcCCc
Confidence 245678999999863322 1222221 1122 23478899999987652 112333334332 22457888999964
Q ss_pred cCCcCcHHHHHHHHHhcCCCCcEEeecCCCCChHH
Q 007334 248 HNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTE 282 (607)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi~e 282 (607)
.. ...........+. ++.+++ +|+++++
T Consensus 282 a~----~G~~l~~~~~~~~-pi~~i~--~Ge~v~d 309 (328)
T 3e70_C 282 AR----GGAALSISYVIDA-PILFVG--VGQGYDD 309 (328)
T ss_dssp SC----CHHHHHHHHHHTC-CEEEEE--CSSSTTC
T ss_pred cc----hhHHHHHHHHHCC-CEEEEe--CCCCccc
Confidence 32 2334445555666 677777 7888754
No 449
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.73 E-value=4.6e-05 Score=84.83 Aligned_cols=22 Identities=36% Similarity=0.588 Sum_probs=20.7
Q ss_pred eEEEEcCCCCchhHHHHHhhcC
Q 007334 326 QLAIVGRPNVGKSTLLNALLQE 347 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~ 347 (607)
.++|+|++|+|||||++.|+|-
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSC
T ss_pred eEEEECCCCChHHHHHHHHhCC
Confidence 4999999999999999999986
No 450
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.68 E-value=2.1e-05 Score=83.62 Aligned_cols=60 Identities=20% Similarity=0.199 Sum_probs=42.7
Q ss_pred ceEEEEcCCCCchhHHHHHhhcC---------------CceeecCCCCceeeeEEEEEEEc-----------CeEEEEEe
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQE---------------DRVLVGPEAGLTRDSVRVHFEYQ-----------GRTVYLVD 378 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~---------------~~~~~~~~~gtT~~~~~~~~~~~-----------~~~~~liD 378 (607)
.-|+|+|.+++|||||+|.|+|. ..... ...++|+.+..+.+.|. ...+.++|
T Consensus 68 ~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f-~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvllD 146 (447)
T 3q5d_A 68 VAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGF-SWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMD 146 (447)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSS-CSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHhhhccccccccccccccccccee-cCCCCCCCceeEEEEecCccccccCCCCcceEEEEc
Confidence 35789999999999999999974 11122 22336666666766663 24688999
Q ss_pred cCCCccc
Q 007334 379 TAGWLQR 385 (607)
Q Consensus 379 TpG~~~~ 385 (607)
|||+.+.
T Consensus 147 TeG~~~~ 153 (447)
T 3q5d_A 147 TQGTFDS 153 (447)
T ss_dssp EECCCSS
T ss_pred CCccccc
Confidence 9998655
No 451
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.61 E-value=0.00047 Score=73.78 Aligned_cols=148 Identities=13% Similarity=0.168 Sum_probs=77.6
Q ss_pred CEEEEecCCCCchhHHHHHhhcc------ceeeeccCCCCce------e--eeeEEEEee-------------------e
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRR------REALVYNTPDDHV------T--RDIREGLAK-------------------L 167 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~------~~~~v~~~~~~~~------T--~~~~~~~~~-------------------~ 167 (607)
-.|+|+|.+|||||||++.|.+. +..+......... . .....+.+. .
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a~~ 373 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 373 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHHHh
Confidence 47999999999999999999853 2222211111000 0 000000000 1
Q ss_pred CCeeEEEecCCCCccccCchhHHHHHHHHHHHHhh-----ccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEec
Q 007334 168 GDLRFKVLDSAGLETEATSGSILDRTAGMTANVLA-----KTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMN 242 (607)
Q Consensus 168 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~-----~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~N 242 (607)
.+..+.|+||+|...... ....+. ......++ ..+-+++|+|++.+. .....++.+.+.. + ...+|+|
T Consensus 374 ~~~DvVLIDTaGrl~~~~--~lm~EL-~kiv~iar~l~~~~P~evLLvLDattGq--~al~~ak~f~~~~-~-itgvIlT 446 (503)
T 2yhs_A 374 RNIDVLIADTAGRLQNKS--HLMEEL-KKIVRVMKKLDVEAPHEVMLTIDASTGQ--NAVSQAKLFHEAV-G-LTGITLT 446 (503)
T ss_dssp TTCSEEEECCCCSCCCHH--HHHHHH-HHHHHHHHTTCTTCSSEEEEEEEGGGTH--HHHHHHHHHHHHT-C-CSEEEEE
T ss_pred cCCCEEEEeCCCccchhh--hHHHHH-HHHHHHHHHhccCCCCeeEEEecCcccH--HHHHHHHHHHhhc-C-CCEEEEE
Confidence 345789999999863321 111111 12222222 245789999988652 2223344444321 2 3467899
Q ss_pred CCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCChHH
Q 007334 243 KCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTE 282 (607)
Q Consensus 243 K~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi~e 282 (607)
|.|-... ...........+. ++.++ -+|+++++
T Consensus 447 KLD~tak----gG~~lsi~~~~~~-PI~fi--g~Ge~vdD 479 (503)
T 2yhs_A 447 KLDGTAK----GGVIFSVADQFGI-PIRYI--GVGERIED 479 (503)
T ss_dssp CGGGCSC----CTHHHHHHHHHCC-CEEEE--ECSSSGGG
T ss_pred cCCCccc----ccHHHHHHHHHCC-CEEEE--ecCCChhh
Confidence 9996432 1233444555565 55554 36777765
No 452
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=97.59 E-value=0.0001 Score=69.57 Aligned_cols=84 Identities=15% Similarity=0.043 Sum_probs=57.6
Q ss_pred HHHHHhhccEEEEEeccchh-------hH---H--------hcCCcEEEEEeCc-cCCCCcCchHHHHHHHHhcHHHHHh
Q 007334 399 SRKNLMRAHVVALVLDAEEV-------RA---V--------EEGRGLVVIVNKM-DLLSGRQNSALYKRVKEAVPQEIQT 459 (607)
Q Consensus 399 ~~~~i~~ad~~llViD~~~~-------~~---~--------~~~~p~ivv~NK~-Dl~~~~~~~~~~~~~~~~~~~~~~~ 459 (607)
...|+.++|++|+|||+++. +. . ..+.|++|++||. |+.......+.. +.+. +..
T Consensus 119 Wr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~----e~L~--L~~ 192 (227)
T 3l82_B 119 IQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLA----HELH--LNL 192 (227)
T ss_dssp HHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHH----HHTT--GGG
T ss_pred HHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHH----HHcC--CcC
Confidence 35788999999999999875 11 0 1467999999995 776554332222 2221 111
Q ss_pred hCCCCCCCCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 460 VIPQVTGIPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 460 ~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+. ....+..|||++|+|+.+-++++...+
T Consensus 193 -l~--R~W~Iq~csA~TGeGL~EGLdWL~~~l 221 (227)
T 3l82_B 193 -LN--HPWLVQDTEAETLTGFLNGIEWILEEV 221 (227)
T ss_dssp -GC--SCEEEEEEETTTCTTHHHHHHHHTTTT
T ss_pred -CC--CCEEEEEeECCCCcCHHHHHHHHHHHH
Confidence 11 245789999999999999999887543
No 453
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.59 E-value=7.8e-05 Score=76.32 Aligned_cols=138 Identities=22% Similarity=0.258 Sum_probs=74.4
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCC------ceeec-CC---------------CCceeeeEEEE--E-----------
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQED------RVLVG-PE---------------AGLTRDSVRVH--F----------- 367 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~------~~~~~-~~---------------~gtT~~~~~~~--~----------- 367 (607)
.+--++++|++|+||||+++.|.+.. ..... +. .|+. .+... .
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~--~v~q~~~~~p~~~v~e~l~ 205 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVK--VIKHSYGADPAAVAYDAIQ 205 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCE--EECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCce--EEeccccCCHHHHHHHHHH
Confidence 34578999999999999999997531 11110 00 0000 00000 0
Q ss_pred --EEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh-------hHHh-cCCcEEEEEeCccCC
Q 007334 368 --EYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV-------RAVE-EGRGLVVIVNKMDLL 437 (607)
Q Consensus 368 --~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~-------~~~~-~~~p~ivv~NK~Dl~ 437 (607)
...+..+.++||+|...... .....+. .....-.+|-.++|+|++.+ ..+. .-...++++||+|..
T Consensus 206 ~~~~~~~d~vliDtaG~~~~~~-~l~~eL~---~i~ral~~de~llvLDa~t~~~~~~~~~~~~~~~~it~iilTKlD~~ 281 (328)
T 3e70_C 206 HAKARGIDVVLIDTAGRSETNR-NLMDEMK---KIARVTKPNLVIFVGDALAGNAIVEQARQFNEAVKIDGIILTKLDAD 281 (328)
T ss_dssp HHHHHTCSEEEEEECCSCCTTT-CHHHHHH---HHHHHHCCSEEEEEEEGGGTTHHHHHHHHHHHHSCCCEEEEECGGGC
T ss_pred HHHhccchhhHHhhccchhHHH-HHHHHHH---HHHHHhcCCCCEEEEecHHHHHHHHHHHHHHHhcCCCEEEEeCcCCc
Confidence 01245677899999744311 1111121 11122248999999998875 1222 223457889999974
Q ss_pred CCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHH
Q 007334 438 SGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAV 483 (607)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l 483 (607)
.... ..+.. .. ..+.|+.+++ +|++++++
T Consensus 282 a~~G--~~l~~---------~~----~~~~pi~~i~--~Ge~v~dl 310 (328)
T 3e70_C 282 ARGG--AALSI---------SY----VIDAPILFVG--VGQGYDDL 310 (328)
T ss_dssp SCCH--HHHHH---------HH----HHTCCEEEEE--CSSSTTCE
T ss_pred cchh--HHHHH---------HH----HHCCCEEEEe--CCCCcccc
Confidence 4321 11111 10 1167999988 78887553
No 454
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.51 E-value=0.00012 Score=73.84 Aligned_cols=144 Identities=7% Similarity=0.080 Sum_probs=74.4
Q ss_pred CCEEEEecCCCCchhHHHHHhhcc-------ceeeeccCCCCceee------------eeEEE---------EeeeCCee
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRR-------REALVYNTPDDHVTR------------DIREG---------LAKLGDLR 171 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~-------~~~~v~~~~~~~~T~------------~~~~~---------~~~~~~~~ 171 (607)
...|+++|.+||||||++..|.+. +...+...+...... ..... .....+..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~d 184 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEYD 184 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCCC
Confidence 358999999999999999998632 223222211100000 00000 00124568
Q ss_pred EEEecCCCCccccCchhHHHHHHHHHHHHhh--ccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccC
Q 007334 172 FKVLDSAGLETEATSGSILDRTAGMTANVLA--KTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHN 249 (607)
Q Consensus 172 ~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~--~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~ 249 (607)
+.|+||||...... .........+. ..+.+++|+|++.+. . ++.++.+....-...-+|+||.|....
T Consensus 185 lvIiDT~G~~~~~~------~~~~el~~~l~~~~~~~~~lVl~at~~~--~--~~~~~~~~~~~l~~~giVltk~D~~~~ 254 (296)
T 2px0_A 185 HVFVDTAGRNFKDP------QYIDELKETIPFESSIQSFLVLSATAKY--E--DMKHIVKRFSSVPVNQYIFTKIDETTS 254 (296)
T ss_dssp EEEEECCCCCTTSH------HHHHHHHHHSCCCTTEEEEEEEETTBCH--H--HHHHHTTTTSSSCCCEEEEECTTTCSC
T ss_pred EEEEeCCCCChhhH------HHHHHHHHHHhhcCCCeEEEEEECCCCH--H--HHHHHHHHHhcCCCCEEEEeCCCcccc
Confidence 99999999873221 11112222332 356789999987542 2 232333322111123567799997643
Q ss_pred CcCcHHHHHHHHHhcCCCCcEEeecCCCCCh
Q 007334 250 GTGSLAGAAAESLMLGFGDPIAISAETGLGM 280 (607)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi 280 (607)
. ..........+. ++.+++ .|+++
T Consensus 255 ~----g~~~~~~~~~~~-pi~~i~--~ge~v 278 (296)
T 2px0_A 255 L----GSVFNILAESKI-GVGFMT--NGQNV 278 (296)
T ss_dssp C----HHHHHHHHTCSC-CCSEEC--CSSCT
T ss_pred h----hHHHHHHHHHCc-CEEEEE--CCCCC
Confidence 2 234444555565 444443 45555
No 455
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.49 E-value=0.0004 Score=73.77 Aligned_cols=120 Identities=17% Similarity=0.209 Sum_probs=68.5
Q ss_pred CCEEEEecCCCCchhHHHHHhh-------ccceeeeccCCCCcee------------eeeEEE---------------Ee
Q 007334 120 LPTVMIIGRPNVGKSALFNRLI-------RRREALVYNTPDDHVT------------RDIREG---------------LA 165 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~-------~~~~~~v~~~~~~~~T------------~~~~~~---------------~~ 165 (607)
...|+++|.+||||||+...|. |.+...+...+..... .+.... ..
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~ 179 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEA 179 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999987 5555444333321000 011000 00
Q ss_pred eeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCc-EEEEecCC
Q 007334 166 KLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIK-PIVAMNKC 244 (607)
Q Consensus 166 ~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p-~ilV~NK~ 244 (607)
...+..+.|+||||..... +....... ....+..+|.+++|+|+..+... ....+.+.. ..+ .-+|+||+
T Consensus 180 ~~~~~D~VIIDTpG~l~~~--~~l~~~L~--~~~~~~~p~~vllVvda~~g~~~--~~~~~~f~~---~l~i~gvVlnK~ 250 (433)
T 2xxa_A 180 KLKFYDVLLVDTAGRLHVD--EAMMDEIK--QVHASINPVETLFVVDAMTGQDA--ANTAKAFNE---ALPLTGVVLTKV 250 (433)
T ss_dssp HHTTCSEEEEECCCCCTTC--HHHHHHHH--HHHHHSCCSEEEEEEETTBCTTH--HHHHHHHHH---HSCCCCEEEECT
T ss_pred HhCCCCEEEEECCCccccc--HHHHHHHH--HHHHhhcCcceeEEeecchhHHH--HHHHHHHhc---cCCCeEEEEecC
Confidence 1146789999999976321 11111111 12334578999999999865332 223333332 234 34799999
Q ss_pred Cccc
Q 007334 245 ESLH 248 (607)
Q Consensus 245 D~~~ 248 (607)
|...
T Consensus 251 D~~~ 254 (433)
T 2xxa_A 251 DGDA 254 (433)
T ss_dssp TSSS
T ss_pred CCCc
Confidence 9754
No 456
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.46 E-value=0.00017 Score=71.35 Aligned_cols=85 Identities=18% Similarity=0.074 Sum_probs=59.0
Q ss_pred HHHHHHhhccEEEEEeccchh-------h-----H----H--hcCCcEEEEEeC-ccCCCCcCchHHHHHHHHhcHHHHH
Q 007334 398 QSRKNLMRAHVVALVLDAEEV-------R-----A----V--EEGRGLVVIVNK-MDLLSGRQNSALYKRVKEAVPQEIQ 458 (607)
Q Consensus 398 ~~~~~i~~ad~~llViD~~~~-------~-----~----~--~~~~p~ivv~NK-~Dl~~~~~~~~~~~~~~~~~~~~~~ 458 (607)
....|+.++|++|+|||+++. + . . ..+.|++|.+|| -|+.......+. .+.+. +.
T Consensus 203 lWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI----~e~L~--L~ 276 (312)
T 3l2o_B 203 QIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYL----AHELH--LN 276 (312)
T ss_dssp HHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHH----HHHTT--GG
T ss_pred HHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHH----HHHcC--Cc
Confidence 345788999999999999875 1 1 0 157899999997 588665433222 22221 11
Q ss_pred hhCCCCCCCCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 459 TVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 459 ~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
. +. ....+..+||++|+|+.+-++++...+
T Consensus 277 ~-l~--r~W~Iq~csA~tGeGL~EGldWL~~~l 306 (312)
T 3l2o_B 277 L-LN--HPWLVQDTEAETLTGFLNGIEWILEEV 306 (312)
T ss_dssp G-GC--SCEEEEEEETTTCTTHHHHHHHHHHHS
T ss_pred c-CC--CcEEEEecccCCCcCHHHHHHHHHHHH
Confidence 1 11 245789999999999999999988754
No 457
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.42 E-value=0.00044 Score=69.93 Aligned_cols=149 Identities=16% Similarity=0.143 Sum_probs=75.7
Q ss_pred CEEEEecCCCCchhHHHHHhhcc------ceeeeccCCCCce----------eeeeEEEEe-----------------ee
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRR------REALVYNTPDDHV----------TRDIREGLA-----------------KL 167 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~------~~~~v~~~~~~~~----------T~~~~~~~~-----------------~~ 167 (607)
-.|+|+|.+|||||||++.|.+. +............ .....+... ..
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~~~ 182 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAMKA 182 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHh
Confidence 48999999999999999999842 2222111110000 000000000 01
Q ss_pred CCeeEEEecCCCCccccCchhHHHHHHHH---HH-HHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecC
Q 007334 168 GDLRFKVLDSAGLETEATSGSILDRTAGM---TA-NVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNK 243 (607)
Q Consensus 168 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~---~~-~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK 243 (607)
.+..+.++||+|...... ....+...+ .. ......+.+++++|+..+.... +.+..+.+. ....++++||
T Consensus 183 ~~~d~~llDt~G~~~~~~--~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~--~~~~~~~~~--~~~t~iivTh 256 (304)
T 1rj9_A 183 RGYDLLFVDTAGRLHTKH--NLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGL--EQAKKFHEA--VGLTGVIVTK 256 (304)
T ss_dssp HTCSEEEECCCCCCTTCH--HHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHH--HHHHHHHHH--HCCSEEEEEC
T ss_pred CCCCEEEecCCCCCCchH--HHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHH--HHHHHHHHH--cCCcEEEEEC
Confidence 234678999999863321 111111111 11 1233567789999987653322 233333322 1245788899
Q ss_pred CCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCChHH
Q 007334 244 CESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTE 282 (607)
Q Consensus 244 ~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi~e 282 (607)
.|..... ..........+. ++.+++ .|+++++
T Consensus 257 ~d~~a~g----g~~l~i~~~~~~-pi~~ig--~Ge~~~d 288 (304)
T 1rj9_A 257 LDGTAKG----GVLIPIVRTLKV-PIKFVG--VGEGPDD 288 (304)
T ss_dssp TTSSCCC----TTHHHHHHHHCC-CEEEEE--CSSSTTC
T ss_pred Ccccccc----cHHHHHHHHHCC-CeEEEe--CCCChhh
Confidence 9865321 122333444565 566665 5665544
No 458
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.39 E-value=0.00027 Score=71.53 Aligned_cols=148 Identities=16% Similarity=0.177 Sum_probs=75.9
Q ss_pred CEEEEecCCCCchhHHHHHhhcc------ceeeeccCCCCce------------eeeeEEE------------E---eee
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRR------REALVYNTPDDHV------------TRDIREG------------L---AKL 167 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~------~~~~v~~~~~~~~------------T~~~~~~------------~---~~~ 167 (607)
..|+|+|.+|+||||++..|.+. +...+........ ..+.... . ...
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a~~ 184 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHALA 184 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHHHh
Confidence 47999999999999999988742 2222221111000 0000000 0 011
Q ss_pred CCeeEEEecCCCCccccCchhHHHHHHHHHHHHh-----hccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEec
Q 007334 168 GDLRFKVLDSAGLETEATSGSILDRTAGMTANVL-----AKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMN 242 (607)
Q Consensus 168 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~-----~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~N 242 (607)
.+..+.++||||.... ...+..+. ......+ ...|.+++|+|+..+ .......+.+.+. -...-+|+|
T Consensus 185 ~~~dvvIiDtpg~~~~--~~~l~~eL-~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~a~~~~~~--~~i~gvVlT 257 (306)
T 1vma_A 185 RNKDVVIIDTAGRLHT--KKNLMEEL-RKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKEA--VNVTGIILT 257 (306)
T ss_dssp TTCSEEEEEECCCCSC--HHHHHHHH-HHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHHH--SCCCEEEEE
T ss_pred cCCCEEEEECCCchhh--HHHHHHHH-HHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHHHHHHHhc--CCCCEEEEe
Confidence 3457999999996411 11122122 2223333 247889999999732 2222222333322 123457789
Q ss_pred CCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCChHH
Q 007334 243 KCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTE 282 (607)
Q Consensus 243 K~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi~e 282 (607)
|.|..... ..........+. ++.+++ .|+++++
T Consensus 258 k~D~~~~g----G~~l~~~~~~~~-Pi~~i~--~Ge~~~d 290 (306)
T 1vma_A 258 KLDGTAKG----GITLAIARELGI-PIKFIG--VGEKAED 290 (306)
T ss_dssp CGGGCSCT----THHHHHHHHHCC-CEEEEE--CSSSGGG
T ss_pred CCCCccch----HHHHHHHHHHCC-CEEEEe--CCCChhh
Confidence 99965432 224444555665 666665 3555544
No 459
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.34 E-value=0.0016 Score=66.28 Aligned_cols=147 Identities=13% Similarity=0.184 Sum_probs=75.6
Q ss_pred CEEEEecCCCCchhHHHHHhhc------cceeeeccCCCCce------ee-----eeEEEEe------------------
Q 007334 121 PTVMIIGRPNVGKSALFNRLIR------RREALVYNTPDDHV------TR-----DIREGLA------------------ 165 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~------~~~~~v~~~~~~~~------T~-----~~~~~~~------------------ 165 (607)
..|+++|.+|+||||++..|.+ .+...+...+.... +. ......+
T Consensus 106 ~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p~~~~~~~l~ 185 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVVFDAIK 185 (320)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCHHHHHHHHHH
Confidence 4799999999999999998864 22222221111000 00 0001111
Q ss_pred --eeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHh-----hccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCc-E
Q 007334 166 --KLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVL-----AKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIK-P 237 (607)
Q Consensus 166 --~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~-----~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p-~ 237 (607)
...++.+.|+||||..... +....+. ......+ ..+|.+++|+|+..+ .... +.++......+ .
T Consensus 186 ~~~~~~yD~VIIDTpg~l~~~--~~l~~eL-~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~l---~~~~~~~~~~~i~ 257 (320)
T 1zu4_A 186 KAKEQNYDLLLIDTAGRLQNK--TNLMAEL-EKMNKIIQQVEKSAPHEVLLVIDATTG--QNGV---IQAEEFSKVADVS 257 (320)
T ss_dssp HHHHTTCSEEEEECCCCGGGH--HHHHHHH-HHHHHHHHTTCTTCCSEEEEEEEGGGT--HHHH---HHHHHHTTTSCCC
T ss_pred HHHhcCCCEEEEcCCCccccc--HHHHHHH-HHHHHHHhcccCCCCceEEEEEECCCc--HHHH---HHHHHHhhcCCCc
Confidence 0135689999999987321 1111111 1111222 247899999999843 2222 22233322233 3
Q ss_pred EEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCChHH
Q 007334 238 IVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTE 282 (607)
Q Consensus 238 ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi~e 282 (607)
=+|+||+|..... ..........+. ++.++. .|+++++
T Consensus 258 GvVltk~d~~~~~----g~~~~~~~~~~~-Pi~~i~--~Ge~~~d 295 (320)
T 1zu4_A 258 GIILTKMDSTSKG----GIGLAIKELLNI-PIKMIG--VGEKVDD 295 (320)
T ss_dssp EEEEECGGGCSCT----THHHHHHHHHCC-CEEEEE--CSSSTTC
T ss_pred EEEEeCCCCCCch----hHHHHHHHHHCc-CEEEEe--CCCCccc
Confidence 4789999965431 223334445565 555554 5666644
No 460
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.30 E-value=0.002 Score=68.01 Aligned_cols=147 Identities=15% Similarity=0.154 Sum_probs=75.9
Q ss_pred CEEEEecCCCCchhHHHHHhhc------cceeeeccCCCCcee------------eeeEEEE------------e---ee
Q 007334 121 PTVMIIGRPNVGKSALFNRLIR------RREALVYNTPDDHVT------------RDIREGL------------A---KL 167 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~------~~~~~v~~~~~~~~T------------~~~~~~~------------~---~~ 167 (607)
..|+++|.+|+||||++..|.+ .+...+...+..... .+..... + ..
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~~~ 178 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARL 178 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999998873 222222211110000 0111000 0 01
Q ss_pred CCeeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcc
Q 007334 168 GDLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESL 247 (607)
Q Consensus 168 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~ 247 (607)
.+..+.|+||||..... .....+.. . ...+-.+|.+++|+|+..+... ....+.+.+. -...-+|+||+|..
T Consensus 179 ~~~DvVIIDTaG~l~~d--~~l~~el~-~-i~~~~~pd~vlLVvDa~tgq~a--v~~a~~f~~~--l~i~GVIlTKlD~~ 250 (425)
T 2ffh_A 179 EARDLILVDTAGRLQID--EPLMGELA-R-LKEVLGPDEVLLVLDAMTGQEA--LSVARAFDEK--VGVTGLVLTKLDGD 250 (425)
T ss_dssp TTCSEEEEECCCCSSCC--HHHHHHHH-H-HHHHHCCSEEEEEEEGGGTTHH--HHHHHHHHHH--TCCCEEEEESGGGC
T ss_pred CCCCEEEEcCCCccccc--HHHHHHHH-H-hhhccCCceEEEEEeccchHHH--HHHHHHHHhc--CCceEEEEeCcCCc
Confidence 45679999999976321 11111111 1 1223368899999999754211 2233333322 11356789999975
Q ss_pred cCCcCcHHHHHHHHHhcCCCCcEEeecCCCCChHH
Q 007334 248 HNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTE 282 (607)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi~e 282 (607)
... ..........+. ++.++. .|+.+++
T Consensus 251 ~~~----g~alsi~~~~g~-PI~flg--~Ge~~~d 278 (425)
T 2ffh_A 251 ARG----GAALSARHVTGK-PIYFAG--VSEKPEG 278 (425)
T ss_dssp SSC----HHHHHHHHHHCC-CEEEEE--CSSSGGG
T ss_pred ccH----HHHHHHHHHHCC-CEEEEe--CCCChhh
Confidence 421 223333445565 555555 4555543
No 461
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.29 E-value=8.4e-05 Score=75.22 Aligned_cols=76 Identities=16% Similarity=0.227 Sum_probs=51.4
Q ss_pred HHhhccEEEEEeccchh------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCE
Q 007334 402 NLMRAHVVALVLDAEEV------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPV 469 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (607)
.+.++|.+++|+|+..+ .....++|.+||+||+||.+.....+..+.+.+.+ .. .+.++
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y----~~-----~g~~v 153 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDY----RN-----IGYDV 153 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHH----HH-----HTCCE
T ss_pred HHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHH----Hh-----CCCeE
Confidence 56789999999999865 11236899999999999987521001112221111 11 14689
Q ss_pred EEcccCCCCCHHHHHHH
Q 007334 470 VFTSALEGRGRIAVMHQ 486 (607)
Q Consensus 470 v~iSA~~g~gv~~l~~~ 486 (607)
+++||++|.|+++|+..
T Consensus 154 ~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 154 YLTSSKDQDSLADIIPH 170 (307)
T ss_dssp EECCHHHHTTCTTTGGG
T ss_pred EEEecCCCCCHHHHHhh
Confidence 99999999998877653
No 462
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.29 E-value=5.3e-05 Score=71.50 Aligned_cols=106 Identities=17% Similarity=0.233 Sum_probs=66.0
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCc-eeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccc-cCcc-------h--
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDR-VLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKE-KGPA-------S-- 393 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~-~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~-~~~~-------~-- 393 (607)
--|+|+|++|||||||+++|++... ......+.||+.+..+. .+|..+.++|.+.+...... ...+ .
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i~~~~fle~~~~~~n~YG 97 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNISANEFLEFGSYQGNMFG 97 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhhhhhhhhhhhhhhceecc
Confidence 4589999999999999999997643 35566778888776543 57788888888765433110 0011 0
Q ss_pred hHHHHHHHHHhhccEEEEEeccchhhHHhc--CCcEEEEEe
Q 007334 394 LSVMQSRKNLMRAHVVALVLDAEEVRAVEE--GRGLVVIVN 432 (607)
Q Consensus 394 ~~~~~~~~~i~~ad~~llViD~~~~~~~~~--~~p~ivv~N 432 (607)
.+.......+.....+|+-+|......... ..|++|.+.
T Consensus 98 t~~~~v~~~l~~G~~vildid~qg~~~~~~~~~~~~~Ifi~ 138 (197)
T 3ney_A 98 TKFETVHQIHKQNKIAILDIEPQTLKIVRTAELSPFIVFIA 138 (197)
T ss_dssp EEHHHHHHHHHTTCEEEEECCGGGHHHHCSTTTCEEEEEEE
T ss_pred cchhhHHHHHhcCCeEEEEECHHHHHHHHhcCCCceEEEEe
Confidence 112233456667778888888765433322 235555444
No 463
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.14 E-value=0.00019 Score=67.76 Aligned_cols=57 Identities=25% Similarity=0.445 Sum_probs=40.8
Q ss_pred CEEEEecCCCCchhHHHHHhhccce-eeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRRE-ALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLE 181 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~-~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~ 181 (607)
..|+|+|.+|||||||+++|++... ......+. +||....+. .+|..+.++|+..+.
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~--TTR~p~~gE--~~G~~y~fvs~~~f~ 77 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPY--TTRPPRKSE--EDGKEYHFISTEEMT 77 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE--ECSCCCTTC--CTTSSCEECCHHHHH
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCCccEEeeecc--cccCCcCCe--eccccceeccHHHhh
Confidence 4799999999999999999997643 23444444 787765543 466777777776654
No 464
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.06 E-value=0.00025 Score=71.74 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=20.3
Q ss_pred CceEEEEcCCCCchhHHHHHhhc
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQ 346 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~ 346 (607)
+-.++++|++||||||+++.|.+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 44689999999999999999874
No 465
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.05 E-value=0.0047 Score=62.12 Aligned_cols=145 Identities=15% Similarity=0.116 Sum_probs=71.7
Q ss_pred CEEEEecCCCCchhHHHHHhhcc------ceeeeccCCCCcee------------eeeEEE---------------Eeee
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRR------REALVYNTPDDHVT------------RDIREG---------------LAKL 167 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~------~~~~v~~~~~~~~T------------~~~~~~---------------~~~~ 167 (607)
..++++|.+|+||||++..|.+. +...+...+..... .+.... ....
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~~~ 178 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARL 178 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999988742 22222111110000 001100 0001
Q ss_pred CCeeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcc
Q 007334 168 GDLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESL 247 (607)
Q Consensus 168 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~ 247 (607)
.+..+.|+||||...... ....+.. ..... -.+|.+++|+|+..+ .......+.+... -...-+|+||+|..
T Consensus 179 ~~~D~viiDtpp~~~~d~--~~~~~l~-~~~~~-~~~~~~~lv~~~~~~--~~~~~~~~~~~~~--~~i~givlnk~d~~ 250 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDE--PLMGELA-RLKEV-LGPDEVLLVLDAMTG--QEALSVARAFDEK--VGVTGLVLTKLDGD 250 (295)
T ss_dssp HTCCEEEEECCCCSSCCH--HHHHHHH-HHHHH-HCCSEEEEEEEGGGT--HHHHHHHHHHHHH--TCCCEEEEECGGGC
T ss_pred CCCCEEEEeCCCCccccH--HHHHHHH-HHhhh-cCCCEEEEEEeCCCc--HHHHHHHHHHhhc--CCCCEEEEECCCCC
Confidence 456899999998763211 1111111 11122 257888999998743 2222222323221 12345789999975
Q ss_pred cCCcCcHHHHHHHHHhcCCCCcEEeecCCCCCh
Q 007334 248 HNGTGSLAGAAAESLMLGFGDPIAISAETGLGM 280 (607)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi 280 (607)
.. ...........+. ++.+++ .|+++
T Consensus 251 ~~----~g~~~~~~~~~~~-pi~~i~--~g~~~ 276 (295)
T 1ls1_A 251 AR----GGAALSARHVTGK-PIYFAG--VSEKP 276 (295)
T ss_dssp SS----CHHHHHHHHHHCC-CEEEEC-------
T ss_pred cc----HHHHHHHHHHHCc-CEEEEe--CCCCc
Confidence 42 1233344455565 555554 45544
No 466
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.03 E-value=0.0013 Score=61.91 Aligned_cols=115 Identities=12% Similarity=0.098 Sum_probs=69.1
Q ss_pred CEEEEe-cCCCCchhHHHHHhh------ccceeeeccCCCCceeeee-----EEEEee-------------eCCeeEEEe
Q 007334 121 PTVMII-GRPNVGKSALFNRLI------RRREALVYNTPDDHVTRDI-----REGLAK-------------LGDLRFKVL 175 (607)
Q Consensus 121 ~~V~iv-G~~nvGKSSL~n~L~------~~~~~~v~~~~~~~~T~~~-----~~~~~~-------------~~~~~~~li 175 (607)
+.|++. +..|+||||+.-.|. |.+...+.-.+....+.-. ....+. ...+.+.|+
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~yD~vii 81 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWSKAGKAAFDVFTAASEKDVYGIRKDLADYDFAIV 81 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHTTSCCSSEEEECCSHHHHHTHHHHTTTSSEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhcCCCCCcEEecCcHHHHHHHHHhcCCCCEEEE
Confidence 357777 678999999976664 3344433322221111100 000011 134689999
Q ss_pred cCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhh---CCCCcEEEEecCCCccc
Q 007334 176 DSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH---APQIKPIVAMNKCESLH 248 (607)
Q Consensus 176 DTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~---~~~~p~ilV~NK~D~~~ 248 (607)
|||+... ..+...+..+|.+++++..+... ..-..+.+.+++. .++.++.+|+|++|...
T Consensus 82 D~~~~~~------------~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~ 144 (206)
T 4dzz_A 82 DGAGSLS------------VITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA 144 (206)
T ss_dssp ECCSSSS------------HHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE
T ss_pred ECCCCCC------------HHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc
Confidence 9998761 12334567799999999987655 4444566777654 23467799999999543
No 467
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.92 E-value=0.0067 Score=62.58 Aligned_cols=149 Identities=14% Similarity=0.147 Sum_probs=75.8
Q ss_pred CEEEEecCCCCchhHHHHHhhcc------ceeeeccCCCCce------e----eeeEEEEee------------------
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRR------REALVYNTPDDHV------T----RDIREGLAK------------------ 166 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~------~~~~v~~~~~~~~------T----~~~~~~~~~------------------ 166 (607)
-.|+|||.+|||||||++.|.+. +..+......... + ....+....
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~~~~ 237 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGK 237 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHHHHH
Confidence 47999999999999999999863 2222111110000 0 001000000
Q ss_pred eCCeeEEEecCCCCccccCchhHHHHHHHHH----HHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEec
Q 007334 167 LGDLRFKVLDSAGLETEATSGSILDRTAGMT----ANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMN 242 (607)
Q Consensus 167 ~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~----~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~N 242 (607)
..+....++||.|...... ....+...+. .......+-+++|+|++.+..... ....+.+.. + ..+++++
T Consensus 238 ~~~~d~~lldt~Gl~~~~~--~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~--~~~~~~~~~-g-~t~iiiT 311 (359)
T 2og2_A 238 EEGYDVVLCDTSGRLHTNY--SLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLP--QAREFNEVV-G-ITGLILT 311 (359)
T ss_dssp HTTCSEEEEECCCCSSCCH--HHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHH--HHHHHHHHT-C-CCEEEEE
T ss_pred hCCCHHHHHHhcCCChhhh--hHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHH--HHHHHHHhc-C-CeEEEEe
Confidence 0133568999999864321 1111111111 112345677899999765544333 223333321 2 3577889
Q ss_pred CCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCChHH
Q 007334 243 KCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTE 282 (607)
Q Consensus 243 K~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi~e 282 (607)
|.|.... ...........+. ++.++. .|+.+++
T Consensus 312 hlD~~~~----gG~~lsi~~~~~~-pI~~ig--~Ge~~~D 344 (359)
T 2og2_A 312 KLDGSAR----GGCVVSVVEELGI-PVKFIG--VGEAVED 344 (359)
T ss_dssp SCTTCSC----THHHHHHHHHHCC-CEEEEE--CSSSGGG
T ss_pred cCccccc----ccHHHHHHHHhCC-CEEEEe--CCCChHh
Confidence 9886532 2334445555565 555554 4555544
No 468
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.72 E-value=0.0013 Score=66.51 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=19.7
Q ss_pred CceEEEEcCCCCchhHHHHHhhc
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQ 346 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~ 346 (607)
+-.++++|.+|+||||++..|.+
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHH
Confidence 34688999999999999998864
No 469
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.71 E-value=0.0099 Score=59.88 Aligned_cols=149 Identities=15% Similarity=0.139 Sum_probs=75.0
Q ss_pred CEEEEecCCCCchhHHHHHhhcc------ceeeeccCCCCce------e----eeeEEE----E-e-------------e
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRR------REALVYNTPDDHV------T----RDIREG----L-A-------------K 166 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~------~~~~v~~~~~~~~------T----~~~~~~----~-~-------------~ 166 (607)
-.++|+|.+|||||||++.|.+. +..+......... + ....+. . . .
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~~~~ 180 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGK 180 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHHHHH
Confidence 47999999999999999999863 2222211110000 0 000000 0 0 0
Q ss_pred eCCeeEEEecCCCCccccCchhHHHHHHHHHHH----HhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEec
Q 007334 167 LGDLRFKVLDSAGLETEATSGSILDRTAGMTAN----VLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMN 242 (607)
Q Consensus 167 ~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~----~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~N 242 (607)
..+....++||.|..... +....+...+... .....+-+++|+|++.+..... ....+.+.. + ..+++++
T Consensus 181 ~~~~d~~lldt~gl~~~~--~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~--~~~~~~~~~-g-~t~iiiT 254 (302)
T 3b9q_A 181 EEGYDVVLCDTSGRLHTN--YSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLP--QAREFNEVV-G-ITGLILT 254 (302)
T ss_dssp HTTCSEEEECCCCCSSCC--HHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHH--HHHHHHHHT-C-CCEEEEE
T ss_pred HcCCcchHHhcCCCCcch--hHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHH--HHHHHHHhc-C-CCEEEEe
Confidence 123356889999986322 1111122111111 1235677889999766554443 233333221 2 3567789
Q ss_pred CCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCChHH
Q 007334 243 KCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTE 282 (607)
Q Consensus 243 K~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi~e 282 (607)
|.|.... ...........+. ++..+. +|+.+++
T Consensus 255 hlD~~~~----~g~~l~~~~~~~~-pi~~i~--~Ge~~~d 287 (302)
T 3b9q_A 255 KLDGSAR----GGCVVSVVEELGI-PVKFIG--VGEAVED 287 (302)
T ss_dssp CCSSCSC----THHHHHHHHHHCC-CEEEEE--CSSSGGG
T ss_pred CCCCCCc----cChheehHHHHCC-CEEEEe--CCCChhh
Confidence 9886532 2344445555555 555554 4554543
No 470
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.70 E-value=0.0015 Score=66.54 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=19.4
Q ss_pred CceEEEEcCCCCchhHHHHHhhc
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQ 346 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~ 346 (607)
+-.++++|.+|+||||++..|.+
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999999988863
No 471
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.69 E-value=0.002 Score=66.45 Aligned_cols=73 Identities=15% Similarity=0.140 Sum_probs=47.1
Q ss_pred HhhccEEEEEeccchh------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEE
Q 007334 403 LMRAHVVALVLDAEEV------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVV 470 (607)
Q Consensus 403 i~~ad~~llViD~~~~------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 470 (607)
+.++|.+++| |+..+ .....++|.+||+||+||.+... ....+.+. .... ..+.+++
T Consensus 128 ~anvD~v~iv-~a~~P~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~~~-~~~~~~~~----~~y~-----~~G~~v~ 196 (358)
T 2rcn_A 128 AANIDQIVIV-SAILPELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDEG-MDFVNEQM----DIYR-----NIGYRVL 196 (358)
T ss_dssp EECCCEEEEE-EESTTTCCHHHHHHHHHHHHHHTCEEEEEEECGGGCCHHH-HHHHHHHH----HHHH-----TTTCCEE
T ss_pred HhcCCEEEEE-EeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCchh-HHHHHHHH----HHHH-----hCCCcEE
Confidence 4578999876 55444 11246899999999999986521 00011111 1111 2366899
Q ss_pred EcccCCCCCHHHHHHH
Q 007334 471 FTSALEGRGRIAVMHQ 486 (607)
Q Consensus 471 ~iSA~~g~gv~~l~~~ 486 (607)
++||++|.|++++...
T Consensus 197 ~~Sa~~~~gl~~L~~~ 212 (358)
T 2rcn_A 197 MVSSHTQDGLKPLEEA 212 (358)
T ss_dssp ECBTTTTBTHHHHHHH
T ss_pred EEecCCCcCHHHHHHh
Confidence 9999999999888764
No 472
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.52 E-value=0.0045 Score=66.24 Aligned_cols=23 Identities=35% Similarity=0.619 Sum_probs=20.3
Q ss_pred CceEEEEcCCCCchhHHHHHhhc
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQ 346 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~ 346 (607)
+-.++|+|.+|+|||||++.|.+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHH
Confidence 45689999999999999999875
No 473
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.45 E-value=0.00085 Score=70.88 Aligned_cols=66 Identities=33% Similarity=0.405 Sum_probs=38.4
Q ss_pred cCeEEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh-------hHHhcCCc-EEEEEeCccCCCC
Q 007334 370 QGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV-------RAVEEGRG-LVVIVNKMDLLSG 439 (607)
Q Consensus 370 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~-------~~~~~~~p-~ivv~NK~Dl~~~ 439 (607)
.+..+.|+||||..... ...............+|.+++|+|++.+ ..+....+ .-+|+||+|....
T Consensus 179 ~~~DvVIIDTaG~l~~d----~~l~~el~~i~~~~~pd~vlLVvDa~tgq~av~~a~~f~~~l~i~GVIlTKlD~~~~ 252 (425)
T 2ffh_A 179 EARDLILVDTAGRLQID----EPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDAR 252 (425)
T ss_dssp TTCSEEEEECCCCSSCC----HHHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHHHHTCCCEEEEESGGGCSS
T ss_pred CCCCEEEEcCCCccccc----HHHHHHHHHhhhccCCceEEEEEeccchHHHHHHHHHHHhcCCceEEEEeCcCCccc
Confidence 35578999999954221 0111111122223368999999999865 12222333 5678999997543
No 474
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.36 E-value=0.0033 Score=63.30 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=19.7
Q ss_pred CceEEEEcCCCCchhHHHHHhhc
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQ 346 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~ 346 (607)
+-.++++|.+|+||||++..|.+
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999998863
No 475
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.22 E-value=0.015 Score=61.39 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.2
Q ss_pred CCCEEEEecCCCCchhHHHHHhh
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLI 141 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~ 141 (607)
....|+|+|.+++|||+|+|.|+
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCchhHHHHHHH
Confidence 45789999999999999999665
No 476
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.15 E-value=0.0021 Score=61.16 Aligned_cols=113 Identities=12% Similarity=0.054 Sum_probs=65.0
Q ss_pred EEEEe-cCCCCchhHHHHHhh------ccceeeeccCCCCceee---------eeEEE-Ee--eeCCeeEEEecCCCC-c
Q 007334 122 TVMII-GRPNVGKSALFNRLI------RRREALVYNTPDDHVTR---------DIREG-LA--KLGDLRFKVLDSAGL-E 181 (607)
Q Consensus 122 ~V~iv-G~~nvGKSSL~n~L~------~~~~~~v~~~~~~~~T~---------~~~~~-~~--~~~~~~~~liDTpG~-~ 181 (607)
.|+++ +..||||||+.-.|. | +...+.-.+....+. +.... .+ -...+.+.++|||+. .
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~~~~~~~~~l~~~vi~~~~l~~l~~~yD~viiD~p~~~~ 80 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSATGWGKRGSLPFKVVDERQAAKYAPKYQNIVIDTQARPE 80 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHHHHHHHHSCCSSEEEEGGGHHHHGGGCSEEEEEEECCCS
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCHHHHhcCCCCCcceeCHHHHHHhhhcCCEEEEeCCCCcC
Confidence 46665 789999999977664 3 443333222211111 00000 00 013467999999987 4
Q ss_pred cccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCccc
Q 007334 182 TEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLH 248 (607)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~ 248 (607)
.. .+...+..+|.+|+++..+...-..-..+.+++++.. +.++.+|+|++|...
T Consensus 81 ~~------------~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~-~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 81 DE------------DLEALADGCDLLVIPSTPDALALDALMLTIETLQKLG-NNRFRILLTIIPPYP 134 (209)
T ss_dssp SS------------HHHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTC-SSSEEEEECSBCCTT
T ss_pred cH------------HHHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhcc-CCCEEEEEEecCCcc
Confidence 11 1234567899999999865321111133556666532 567889999998653
No 477
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.15 E-value=0.0022 Score=64.46 Aligned_cols=66 Identities=33% Similarity=0.405 Sum_probs=37.0
Q ss_pred cCeEEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh-------hHHhcCCc-EEEEEeCccCCCC
Q 007334 370 QGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV-------RAVEEGRG-LVVIVNKMDLLSG 439 (607)
Q Consensus 370 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~-------~~~~~~~p-~ivv~NK~Dl~~~ 439 (607)
.+..+.|+||||..... ...+...........+|.+++|+|+... .......+ .-+|+||+|....
T Consensus 179 ~~~D~viiDtpp~~~~d----~~~~~~l~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~~~~~i~givlnk~d~~~~ 252 (295)
T 1ls1_A 179 EARDLILVDTAGRLQID----EPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDAR 252 (295)
T ss_dssp HTCCEEEEECCCCSSCC----HHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHTCCCEEEEECGGGCSS
T ss_pred CCCCEEEEeCCCCcccc----HHHHHHHHHHhhhcCCCEEEEEEeCCCcHHHHHHHHHHhhcCCCCEEEEECCCCCcc
Confidence 45689999999853210 0111111111122258999999998754 11222233 5578999997543
No 478
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.14 E-value=0.0009 Score=72.05 Aligned_cols=117 Identities=13% Similarity=0.103 Sum_probs=60.2
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEe--ee--CCeeEEEecCCCCccccCchhHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLA--KL--GDLRFKVLDSAGLETEATSGSILDRTAG 195 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~--~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~ 195 (607)
...|+++|.||+||||+.++|...-. ..+. -|........ .. ......+||+.|................
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~-----~~~~-~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~ 112 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLN-----FIGV-PTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALN 112 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH-----HTTC-CEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHh-----ccCC-CceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHH
Confidence 35799999999999999999976421 1110 1111110000 00 1123456788775310000000001122
Q ss_pred HHHHHhhccCEEEEEEecCCCCCHhH-HHHHHHHHhhCCCCcEEEEecCCC
Q 007334 196 MTANVLAKTQFAIFMIDVRSGLHPLD-LEVGKWLRKHAPQIKPIVAMNKCE 245 (607)
Q Consensus 196 ~~~~~~~~ad~vl~VvD~s~~~~~~~-~~~~~~l~~~~~~~p~ilV~NK~D 245 (607)
....++..+++.++|+|+++. +... ..+.+.+++. ..+++.+--.|+
T Consensus 113 ~~~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~--~~~vv~l~~~~~ 160 (469)
T 1bif_A 113 DVRKFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN--GYKTFFVESICV 160 (469)
T ss_dssp HHHHHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH--TCEEEEEEECCC
T ss_pred HHHHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc--CCcEEEEEEECC
Confidence 224566667888999999886 3333 3345556554 445555543343
No 479
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.85 E-value=0.0042 Score=57.44 Aligned_cols=23 Identities=30% Similarity=0.602 Sum_probs=21.1
Q ss_pred CEEEEecCCCCchhHHHHHhhcc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
..++|+|.+|||||||++.|.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46999999999999999999875
No 480
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.81 E-value=0.0062 Score=61.40 Aligned_cols=91 Identities=14% Similarity=0.085 Sum_probs=58.8
Q ss_pred CCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCChHHHHHHhccchHHHHhhhhccccccCCCCCCCC
Q 007334 234 QIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDV 313 (607)
Q Consensus 234 ~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~ 313 (607)
..+..+|++|.|... +.....+...+. +++.+++.+..++..|..+|...+.... .++..+
T Consensus 79 ~~~P~IIltrg~~~p------eelie~A~~~~I-PVL~T~~~ts~~~~~l~~~l~~~~~~~~--~~H~~~---------- 139 (314)
T 1ko7_A 79 PETPAIIVTRDLEPP------EELIEAAKEHET-PLITSKIATTQLMSRLTTFLEHELARTT--SLHGVL---------- 139 (314)
T ss_dssp TTCCCEEECTTCCCC------HHHHHHHHHTTC-CEEECCSCHHHHHHHHHHHHHHHTCEEE--EEESEE----------
T ss_pred CCCCEEEEeCCCCCC------HHHHHHHHHCCC-eEEEECCchhHHHHHHHHHHHHhhccce--eeeEEE----------
Confidence 344556678888764 334555566677 7888888888888888777665443210 000000
Q ss_pred CCCCcccccCCceEEEEcCCCCchhHHHHHhhcCCc
Q 007334 314 TSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDR 349 (607)
Q Consensus 314 ~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~~~~ 349 (607)
-.-...-|+++|++|+||||+...|.....
T Consensus 140 ------v~~~g~~vl~~G~sG~GKSt~a~~l~~~g~ 169 (314)
T 1ko7_A 140 ------VDVYGVGVLITGDSGIGKSETALELIKRGH 169 (314)
T ss_dssp ------EEETTEEEEEEESTTSSHHHHHHHHHHTTC
T ss_pred ------EEECCEEEEEEeCCCCCHHHHHHHHHhcCC
Confidence 001234699999999999999999997643
No 481
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.77 E-value=0.32 Score=55.31 Aligned_cols=24 Identities=17% Similarity=0.409 Sum_probs=21.3
Q ss_pred CCEEEEecCCCCchhHHHHHhhcc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
..-|.|.|.||+|||+|.+++.+.
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~e 261 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999764
No 482
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.58 E-value=0.0031 Score=58.30 Aligned_cols=38 Identities=24% Similarity=0.375 Sum_probs=26.3
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCc-eeecCCCCceeeeE
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDR-VLVGPEAGLTRDSV 363 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~-~~~~~~~gtT~~~~ 363 (607)
.++|+|++|||||||++.|.+... ........+|+.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~ 45 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPK 45 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCC
Confidence 589999999999999999987532 12233444555543
No 483
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.47 E-value=0.0069 Score=56.01 Aligned_cols=23 Identities=35% Similarity=0.808 Sum_probs=20.9
Q ss_pred EEEEecCCCCchhHHHHHhhccc
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRR 144 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~ 144 (607)
+++|+|.+|+|||||++.|++.-
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998753
No 484
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.47 E-value=0.018 Score=57.95 Aligned_cols=67 Identities=10% Similarity=-0.005 Sum_probs=40.5
Q ss_pred CeeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhh--CCCCcEE-EEecCCC
Q 007334 169 DLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH--APQIKPI-VAMNKCE 245 (607)
Q Consensus 169 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~--~~~~p~i-lV~NK~D 245 (607)
++.++|+|||+..... .+...+..||.+|+|++.+...-..-..+.+.+++. ..+.+++ +|+|+++
T Consensus 156 ~yD~ViiD~p~~~~~~-----------~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~ 224 (307)
T 3end_A 156 DTDVVIFDVLGDVVCG-----------GFAAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSR 224 (307)
T ss_dssp SCSEEEEEECCSSCCG-----------GGGGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCS
T ss_pred cCCEEEEeCCCccchH-----------HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCC
Confidence 4678999998865221 012345779999999976431111113345666653 2345554 8999998
Q ss_pred c
Q 007334 246 S 246 (607)
Q Consensus 246 ~ 246 (607)
.
T Consensus 225 ~ 225 (307)
T 3end_A 225 A 225 (307)
T ss_dssp C
T ss_pred c
Confidence 4
No 485
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.34 E-value=0.0041 Score=57.97 Aligned_cols=39 Identities=28% Similarity=0.519 Sum_probs=27.5
Q ss_pred EEEecCCCCchhHHHHHhhccce-eeeccCCCCceeeeeEEE
Q 007334 123 VMIIGRPNVGKSALFNRLIRRRE-ALVYNTPDDHVTRDIREG 163 (607)
Q Consensus 123 V~ivG~~nvGKSSL~n~L~~~~~-~~v~~~~~~~~T~~~~~~ 163 (607)
|+|+|++|||||||+++|+.... .+....+. |||....+
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~--TTR~pR~g 43 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSS--TTRTPRAG 43 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCE--ECSCCCTT
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEE--eccCCCCC
Confidence 88999999999999999986532 12222333 77765443
No 486
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.27 E-value=0.0074 Score=56.73 Aligned_cols=23 Identities=30% Similarity=0.592 Sum_probs=20.9
Q ss_pred CEEEEecCCCCchhHHHHHhhcc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
..++|+|.+|||||||++.|++.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36999999999999999999874
No 487
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.24 E-value=0.0024 Score=59.59 Aligned_cols=51 Identities=29% Similarity=0.327 Sum_probs=34.8
Q ss_pred EEEEcCCCCchhHHHHHhhcCCc-eeecCCCCceeeeEEEEEEEcCeEEEEEec
Q 007334 327 LAIVGRPNVGKSTLLNALLQEDR-VLVGPEAGLTRDSVRVHFEYQGRTVYLVDT 379 (607)
Q Consensus 327 v~ivG~~nvGKSslin~l~~~~~-~~~~~~~gtT~~~~~~~~~~~~~~~~liDT 379 (607)
|+|+|++|||||||+++|+.... ......+.|||.+..+ +.+|..|.+++-
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~g--E~~G~dY~Fvs~ 55 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAG--EVNGKDYNFVSV 55 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTT--CCBTTTBEECCH
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCC--CcCCceeEeecH
Confidence 78999999999999999986532 2334566677765433 235555665543
No 488
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.17 E-value=0.011 Score=54.44 Aligned_cols=25 Identities=24% Similarity=0.545 Sum_probs=22.6
Q ss_pred CCCEEEEecCCCCchhHHHHHhhcc
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
+.+.++|+|.+|+|||||+++|++.
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3678999999999999999999874
No 489
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=94.98 E-value=0.0088 Score=57.90 Aligned_cols=64 Identities=16% Similarity=0.085 Sum_probs=40.5
Q ss_pred CCeeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhH-HHHHHHHHhhCCCCcEEEEecCCC
Q 007334 168 GDLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLD-LEVGKWLRKHAPQIKPIVAMNKCE 245 (607)
Q Consensus 168 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~-~~~~~~l~~~~~~~p~ilV~NK~D 245 (607)
..+.+.|+|||+.... .+...+..+|.+++|++.+.. +... ..+.+++.+.. -..+.+|+|+++
T Consensus 130 ~~yD~viiD~pp~~~~------------~~~~~l~~aD~viiv~~~~~~-s~~~~~~~~~~~~~~~-~~~~~~v~N~~~ 194 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEH------------LTRGTAKAVDMMIAVIEPNLN-SIKTGLNIEKLAGDLG-IKKVRYVINKVR 194 (254)
T ss_dssp TCCSEEEEEECTTCTT------------CCHHHHTTCSEEEEEECSSHH-HHHHHHHHHHHHHHHT-CSCEEEEEEEEC
T ss_pred CCCCEEEEeCCCcccH------------HHHHHHHHCCEEEEecCCCHH-HHHHHHHHHHHHHHcC-CccEEEEEeCCC
Confidence 4567999999876522 123456789999999986532 1121 23445555552 245779999998
No 490
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.94 E-value=0.011 Score=54.53 Aligned_cols=22 Identities=36% Similarity=0.797 Sum_probs=20.4
Q ss_pred eEEEEcCCCCchhHHHHHhhcC
Q 007334 326 QLAIVGRPNVGKSTLLNALLQE 347 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~ 347 (607)
+++++|++|+|||||++.++|.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999875
No 491
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.92 E-value=0.012 Score=55.66 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=21.5
Q ss_pred CEEEEecCCCCchhHHHHHhhccc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRR 144 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~ 144 (607)
-.++|+|.+|+|||||++.|.|--
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 369999999999999999998853
No 492
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=94.84 E-value=0.079 Score=58.50 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=17.5
Q ss_pred CCEEEEecCCCCchhHHHHHhh
Q 007334 120 LPTVMIIGRPNVGKSALFNRLI 141 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~ 141 (607)
...+.+-|.+|+||||+--.|.
T Consensus 8 ~~i~~~sgkGGvGKTT~a~~lA 29 (589)
T 1ihu_A 8 PPYLFFTGKGGVGKTSISCATA 29 (589)
T ss_dssp CSEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCcCHHHHHHHHHH
Confidence 3467888999999999976654
No 493
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.79 E-value=0.0079 Score=55.23 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=21.3
Q ss_pred CCEEEEecCCCCchhHHHHHhhcc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
...|+|+|.+|+|||||++.|++.
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999875
No 494
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.70 E-value=0.015 Score=54.52 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=21.1
Q ss_pred CEEEEecCCCCchhHHHHHhhcc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
..++|+|.+|+|||||++.|.+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 46999999999999999999875
No 495
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.66 E-value=0.014 Score=55.77 Aligned_cols=23 Identities=30% Similarity=0.580 Sum_probs=21.0
Q ss_pred CEEEEecCCCCchhHHHHHhhcc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
-.++|+|.+|+|||||++.|++.
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36999999999999999999884
No 496
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.62 E-value=0.015 Score=53.73 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=21.0
Q ss_pred CEEEEecCCCCchhHHHHHhhcc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
..|+|+|.+|+|||||++.|.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 36999999999999999999875
No 497
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.61 E-value=0.015 Score=54.93 Aligned_cols=23 Identities=39% Similarity=0.492 Sum_probs=21.1
Q ss_pred CEEEEecCCCCchhHHHHHhhcc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
..|+|+|.+|+|||||++.|.+.
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999875
No 498
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.58 E-value=0.015 Score=53.90 Aligned_cols=22 Identities=32% Similarity=0.613 Sum_probs=20.3
Q ss_pred EEEEecCCCCchhHHHHHhhcc
Q 007334 122 TVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
.++|+|.+|||||||++.|++.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999875
No 499
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.53 E-value=0.017 Score=55.27 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=21.7
Q ss_pred CEEEEecCCCCchhHHHHHhhccc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRR 144 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~ 144 (607)
..++|+|.+|||||||++.|++..
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 479999999999999999999854
No 500
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.49 E-value=0.018 Score=55.79 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=21.2
Q ss_pred CEEEEecCCCCchhHHHHHhhcc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
-.++|+|..|+|||||++.|.|-
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 47999999999999999999885
Done!