BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 007335
         (607 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3LLO|A Chain A, Crystal Structure Of The Stas Domain Of Motor Protein
           Prestin (Anion Transporter Slc26a5)
          Length = 143

 Score = 39.7 bits (91), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 8/92 (8%)

Query: 510 PGIELQGRLPRTDTYGDISQFPMAIKTPGILTIRINSALFCFANANFIRERIMRWVTEEQ 569
           P   + G+LP TD Y DI  +    + PGI   +IN+ ++ +AN++     + R      
Sbjct: 2   PSYTVLGQLPDTDVYIDIDAYEEVKEIPGIKIFQINAPIY-YANSDLYSSALKRKTGVNG 60

Query: 570 DELEETTKRTIQAVIIDMSNSMNIDTSGILVL 601
            E        I  VI+D +    +D+ G+  L
Sbjct: 61  SE-------NIHTVILDFTQVNFMDSVGVKTL 85


>pdb|2KLN|A Chain A, Solution Structure Of Stas Domain Of Rv1739c From M.
           Tuberculosis
          Length = 130

 Score = 38.5 bits (88), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 42/79 (53%), Gaps = 9/79 (11%)

Query: 526 DISQFPMAIKTPGILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVII 585
           DI  +P A + PG++  R ++ L CFANA   R R +  V ++  ++E          ++
Sbjct: 3   DIDDYPQAKRVPGLVVYRYDAPL-CFANAEDFRRRALTVVDQDPGQVE--------WFVL 53

Query: 586 DMSNSMNIDTSGILVLEEL 604
           +  +++ +D + +  L++L
Sbjct: 54  NAESNVEVDLTALDALDQL 72


>pdb|1EGZ|A Chain A, Cellulase Cel5 From Erwinia Chrysanthemi, A Family Gh 5-2
           Enzyme
 pdb|1EGZ|B Chain B, Cellulase Cel5 From Erwinia Chrysanthemi, A Family Gh 5-2
           Enzyme
 pdb|1EGZ|C Chain C, Cellulase Cel5 From Erwinia Chrysanthemi, A Family Gh 5-2
           Enzyme
          Length = 291

 Score = 34.7 bits (78), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 2/61 (3%)

Query: 130 YTSVIPPLIYALMGSSREIAIGPVAVVSMLLSALMQNVQDPAADPVAYRKLVFTVTFFAG 189
           +++ I P   A++ + R  AI P  ++ +   +  QNV + + DP+  + + +T+ F+AG
Sbjct: 139 WSNTIKPYAEAVISAIR--AIDPDNLIIVGTPSWSQNVDEASRDPINAKNIAYTLHFYAG 196

Query: 190 V 190
            
Sbjct: 197 T 197


>pdb|4EI7|A Chain A, Crystal Structure Of Bacillus Cereus Tubz, Gdp-Form
 pdb|4EI7|B Chain B, Crystal Structure Of Bacillus Cereus Tubz, Gdp-Form
 pdb|4EI9|A Chain A, Crystal Structure Of Bacillus Cereus Tubz, Gtp-Form
 pdb|4EI9|B Chain B, Crystal Structure Of Bacillus Cereus Tubz, Gtp-Form
          Length = 389

 Score = 29.6 bits (65), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 11/24 (45%), Positives = 17/24 (70%)

Query: 519 PRTDTYGDISQFPMAIKTPGILTI 542
           P +DT+ D S+F   I TPG+L++
Sbjct: 228 PFSDTHFDASEFAQVINTPGVLSL 251


>pdb|4EI8|A Chain A, Crystal Structure Of Bacillus Cereus Tubz, Apo-Form
          Length = 389

 Score = 29.6 bits (65), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 11/24 (45%), Positives = 17/24 (70%)

Query: 519 PRTDTYGDISQFPMAIKTPGILTI 542
           P +DT+ D S+F   I TPG+L++
Sbjct: 228 PFSDTHFDASEFAQVINTPGVLSL 251


>pdb|3F2B|A Chain A, Dna Polymerase Polc From Geobacillus Kaustophilus Complex
           With Dna, Dgtp, Mg And Zn
 pdb|3F2C|A Chain A, Dna Polymerase Polc From Geobacillus Kaustophilus Complex
           With Dna, Dgtp And Mn
 pdb|3F2D|A Chain A, Dna Polymerase Polc From Geobacillus Kaustophilus Complex
           With Dna, Dgtp, Mn And Zn
          Length = 1041

 Score = 28.9 bits (63), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 22/38 (57%)

Query: 297 LSVILSTLIVYLTKADKHGVKIVKHIKGGLNPSSAHQL 334
           + V+ +  + YL   DK   KI+ H +GG NP + H+L
Sbjct: 322 IPVVATGNVHYLNPEDKIYRKILIHSQGGANPLNRHEL 359


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.138    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,465,553
Number of Sequences: 62578
Number of extensions: 509123
Number of successful extensions: 1290
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1284
Number of HSP's gapped (non-prelim): 10
length of query: 607
length of database: 14,973,337
effective HSP length: 104
effective length of query: 503
effective length of database: 8,465,225
effective search space: 4258008175
effective search space used: 4258008175
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 54 (25.4 bits)