Query 007335
Match_columns 607
No_of_seqs 298 out of 1901
Neff 7.7
Searched_HMMs 46136
Date Thu Mar 28 22:11:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007335.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007335hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0236 Sulfate/bicarbonate/ox 100.0 3E-106 6E-111 907.7 39.0 572 30-607 13-597 (665)
2 TIGR00815 sulP high affinity s 100.0 3.4E-95 7E-100 814.2 56.4 520 83-607 1-521 (563)
3 COG0659 SUL1 Sulfate permease 100.0 2.9E-87 6.2E-92 738.8 52.9 496 78-607 3-501 (554)
4 PRK11660 putative transporter; 100.0 1.4E-84 3E-89 728.7 54.7 476 86-607 19-518 (568)
5 PF00916 Sulfate_transp: Sulfa 100.0 4.2E-49 9E-54 406.1 16.7 280 195-475 1-280 (280)
6 TIGR03173 pbuX xanthine permea 100.0 4.7E-26 1E-30 246.4 35.3 321 107-472 11-352 (406)
7 COG2252 Xanthine/uracil/vitami 99.9 7.4E-25 1.6E-29 230.8 34.4 385 76-507 4-408 (436)
8 TIGR00801 ncs2 uracil-xanthine 99.9 7.7E-25 1.7E-29 237.0 32.8 326 106-471 20-367 (415)
9 PRK10720 uracil transporter; P 99.9 1.2E-24 2.6E-29 235.8 32.6 355 107-511 30-414 (428)
10 PF13792 Sulfate_tra_GLY: Sulf 99.9 8.7E-26 1.9E-30 187.2 7.7 83 82-164 1-84 (84)
11 TIGR03616 RutG pyrimidine util 99.9 1.3E-20 2.9E-25 204.1 35.2 328 97-465 30-372 (429)
12 PF00860 Xan_ur_permease: Perm 99.8 4.7E-18 1E-22 183.0 31.6 343 98-471 2-365 (389)
13 PRK11412 putative uracil/xanth 99.8 1.6E-17 3.5E-22 179.1 33.7 335 106-472 23-374 (433)
14 COG2233 UraA Xanthine/uracil p 99.8 1.9E-18 4.1E-23 183.8 22.7 308 127-469 57-376 (451)
15 TIGR00834 ae anion exchange pr 99.6 1.3E-12 2.8E-17 149.7 35.7 369 74-457 348-790 (900)
16 KOG1172 Na+-independent Cl/HCO 99.6 2.9E-11 6.3E-16 135.4 37.4 338 111-457 374-766 (876)
17 TIGR00843 benE benzoate transp 99.5 1.5E-11 3.3E-16 130.2 33.3 341 98-499 22-392 (395)
18 PF03594 BenE: Benzoate membra 99.3 3.9E-09 8.5E-14 110.0 31.9 273 178-500 87-377 (378)
19 PF00955 HCO3_cotransp: HCO3- 99.1 4E-11 8.6E-16 131.0 2.9 349 102-460 38-474 (510)
20 PF01740 STAS: STAS domain; I 98.9 6.1E-10 1.3E-14 99.2 4.3 75 530-607 1-75 (117)
21 COG3135 BenE Uncharacterized p 98.8 2.2E-06 4.7E-11 87.9 24.6 225 178-448 102-335 (402)
22 KOG1292 Xanthine/uracil transp 98.8 9.2E-07 2E-11 94.1 21.0 295 127-457 54-390 (510)
23 cd06844 STAS Sulphate Transpor 98.7 1.8E-08 3.9E-13 87.3 6.0 62 535-607 5-66 (100)
24 TIGR02886 spore_II_AA anti-sig 98.6 6.5E-08 1.4E-12 84.6 5.7 60 536-606 6-65 (106)
25 cd07041 STAS_RsbR_RsbS_like Su 98.5 1.8E-07 4E-12 82.1 6.2 60 536-606 8-67 (109)
26 cd07042 STAS_SulP_like_sulfate 98.3 2.3E-06 5E-11 74.3 7.7 62 535-606 6-67 (107)
27 TIGR00377 ant_ant_sig anti-ant 98.0 1E-05 2.2E-10 70.8 5.4 60 536-606 10-69 (108)
28 cd07043 STAS_anti-anti-sigma_f 98.0 1.7E-05 3.6E-10 67.8 6.4 59 536-606 6-64 (99)
29 PF11840 DUF3360: Protein of u 97.6 0.018 3.9E-07 59.9 23.0 275 151-471 125-418 (492)
30 PF13466 STAS_2: STAS domain 96.9 0.0019 4E-08 53.2 5.3 52 542-606 1-52 (80)
31 COG1366 SpoIIAA Anti-anti-sigm 96.7 0.0039 8.5E-08 55.5 6.1 56 540-606 15-70 (117)
32 TIGR00815 sulP high affinity s 92.8 5.5 0.00012 45.4 18.0 109 341-455 14-140 (563)
33 COG0659 SUL1 Sulfate permease 88.3 9.3 0.0002 43.4 14.4 107 344-456 24-142 (554)
34 PRK11412 putative uracil/xanth 88.2 15 0.00033 40.4 15.5 127 90-233 236-369 (433)
35 TIGR03173 pbuX xanthine permea 86.6 21 0.00046 38.8 15.7 96 105-217 226-331 (406)
36 PRK11660 putative transporter; 83.7 65 0.0014 36.8 18.4 115 92-224 274-394 (568)
37 TIGR00801 ncs2 uracil-xanthine 81.9 9.2 0.0002 41.8 10.3 111 104-231 240-361 (415)
38 PRK10720 uracil transporter; P 77.6 21 0.00046 39.2 11.4 111 104-232 231-353 (428)
39 COG2233 UraA Xanthine/uracil p 73.8 13 0.00028 40.8 8.3 67 344-410 250-328 (451)
40 TIGR03616 RutG pyrimidine util 66.1 33 0.00073 37.7 9.6 86 126-229 283-370 (429)
41 COG0573 PstC ABC-type phosphat 63.4 2E+02 0.0043 30.2 15.1 42 84-125 63-112 (310)
42 PF00860 Xan_ur_permease: Perm 60.6 86 0.0019 33.9 11.5 116 99-231 233-359 (389)
43 TIGR00843 benE benzoate transp 51.3 3.6E+02 0.0077 29.4 15.0 105 343-449 22-142 (395)
44 COG3113 Predicted NTP binding 48.1 23 0.0005 30.3 3.5 29 578-606 37-65 (99)
45 PF00916 Sulfate_transp: Sulfa 48.1 1.4E+02 0.003 30.3 10.2 201 265-468 73-276 (280)
46 PHA00736 hypothetical protein 44.9 1.4E+02 0.003 23.5 6.9 68 114-191 4-72 (79)
47 TIGR00210 gltS sodium--glutama 40.0 1.8E+02 0.0039 31.7 9.7 40 185-224 8-51 (398)
48 COG1296 AzlC Predicted branche 38.3 4.3E+02 0.0093 26.6 15.4 50 94-148 10-62 (238)
49 TIGR00822 EII-Sor PTS system, 34.9 4.8E+02 0.01 26.7 11.3 28 196-223 162-189 (265)
50 PF03956 DUF340: Membrane prot 32.1 92 0.002 30.2 5.4 57 438-494 23-80 (191)
51 KOG1292 Xanthine/uracil transp 28.8 2.4E+02 0.0052 31.4 8.3 76 127-218 309-385 (510)
52 KOG0236 Sulfate/bicarbonate/ox 28.2 1E+03 0.022 27.8 15.0 119 86-222 313-440 (665)
53 PF03616 Glt_symporter: Sodium 27.9 3.7E+02 0.008 28.9 9.7 96 182-308 5-106 (368)
54 PF09345 DUF1987: Domain of un 27.1 1.5E+02 0.0032 25.6 5.2 58 540-606 10-67 (99)
55 COG1269 NtpI Archaeal/vacuolar 26.1 3.5E+02 0.0075 31.6 9.7 45 179-224 456-500 (660)
56 COG0786 GltS Na+/glutamate sym 25.0 2E+02 0.0043 31.1 6.7 43 182-224 7-53 (404)
57 PF04206 MtrE: Tetrahydrometha 24.9 6.9E+02 0.015 25.1 9.9 89 120-224 51-143 (269)
58 COG4129 Predicted membrane pro 23.9 2.7E+02 0.0058 29.6 7.5 51 410-466 8-58 (332)
59 PRK09757 PTS system N-acetylga 23.8 5.4E+02 0.012 26.4 9.5 109 417-532 147-265 (267)
60 cd00394 Clp_protease_like Case 22.2 2.3E+02 0.0049 26.1 6.1 52 541-604 1-52 (161)
61 PRK04125 murein hydrolase regu 22.1 97 0.0021 28.5 3.3 20 285-304 27-46 (141)
62 PF03594 BenE: Benzoate membra 22.1 1E+03 0.022 25.7 13.6 83 127-222 242-326 (378)
63 PF05437 AzlD: Branched-chain 22.0 3E+02 0.0064 23.2 6.2 22 433-454 32-53 (99)
No 1
>KOG0236 consensus Sulfate/bicarbonate/oxalate exchanger SAT-1 and related transporters (SLC26 family) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3e-106 Score=907.70 Aligned_cols=572 Identities=40% Similarity=0.619 Sum_probs=511.6
Q ss_pred hcccccCCCCCchHHHHHHhchhccCCCCcCcccccccchhhhhHHHhhhcccccccccccCCh-hhhhhhHHHHHHHHH
Q 007335 30 ARWLLNSPDPPSIWHELAGSIREAFFPRNKLSSSSRVKQTWRRSAFSFLRGLFPILNWGRNYKA-SKFKSDLMAGLTLAS 108 (607)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~Pi~~wl~~y~~-~~l~~D~~aGltv~~ 108 (607)
.++.++.|+.++..++.++..+++.+++++..++.+++.++++++.+.++++|||++|+|+|++ +|+.+|++||+|+|+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Pil~Wlp~Y~~~~~l~~DliaGltvg~ 92 (665)
T KOG0236|consen 13 SRASVDTPTFDSSNEEEKSSVENTPTRKDKSERFRNKQRCSSNKFLRSLLSLLPILEWLPKYSLKEWLLGDLIAGLTVGS 92 (665)
T ss_pred ccccccCCCCCcchhhhhccccCccccccHHHHhhccccccHHHHHHHHHhhccHhhhhhcCCchhhchHHHhcCceeee
Confidence 5677888888888888888888887777777776233344555689999999999999999999 999999999999999
Q ss_pred HHHhhHHHHHHhhCCCchhhHHHhhhhHHHHHHhcCCCccccchhHHHHHHHHHHHhhhcCCCC---ChHHHHHHHHHHH
Q 007335 109 LSIPQSIGYANLAKLDPQYGLYTSVIPPLIYALMGSSREIAIGPVAVVSMLLSALMQNVQDPAA---DPVAYRKLVFTVT 185 (607)
Q Consensus 109 ~~iPq~~aya~laglpp~~GLyss~i~~liy~lfGss~~~~~Gp~a~~sll~~~~v~~~~~~~~---~~~~~~~~a~~~t 185 (607)
+++||+||||.+||+||+|||||+|+|+++|++||||||+++||+|++|+|+++++++..++.. ++..+++++.++|
T Consensus 93 l~VPQ~iaYa~la~lppiyGLYssf~~~~iY~~fGtsr~isiG~~av~sLmv~~~v~~~v~~~~~~~~~~~~i~va~~lt 172 (665)
T KOG0236|consen 93 LSVPQGLAYALLAGLPPIYGLYSSFFPPLIYAIFGTSRHVSIGPFAVVSLMVGTVVSQVVLSEAPSNDIATTIQVATTLT 172 (665)
T ss_pred eecchHHHHHHHcCCChHHHHHHHHHHHHHheeccCCCcccccHHHHHHHHHHHHHHHHHhccCCCcCcchhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988887665443 4567889999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHHHHHHhhhhhhCccccCCCCcHHHHHHHHHhhcCcCCcc-hhHH
Q 007335 186 FFAGVFQSVFGLFRLGFLVDFLSHAAIVGFMAGAAIVIGLQQLKGLLGISHFTNKTDVVSVLGSVFSSLHHSYWY-PLNF 264 (607)
Q Consensus 186 ~l~Gi~~~llG~lrLg~l~~flp~~vi~Gf~~gigl~i~~~ql~~~lG~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~ 264 (607)
|++|++|++||++|||++++|+|+|++.||++|+|++++++|+|.++|+++.+++.+....+...+...++. ++ +.++
T Consensus 173 ~l~Giiq~~mG~lrLGfl~~~lS~~~l~GFt~gaa~~I~~sQlk~llGi~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 251 (665)
T KOG0236|consen 173 FLTGIIQLILGLLRLGFLVRFLSEPALSGFTTGAALHIVTSQLKVLLGITSFPRHSGPGSIVFIVFDLLANL-PKTLATL 251 (665)
T ss_pred HHHHHHHHHHHHHhcChHHHHccHHHHhHhhhhhhhhhhHHhhHhhccccccCCCCCceeEEEeeHHhhhcc-cccchhh
Confidence 999999999999999999999999999999999999999999999999997666666655544434333221 22 7899
Q ss_pred HHHHHHHHHHHHHHH-hhhccccccccccchhHHHHHHHHHHHHHhhcCC-CCeeeeecccCCCCCCCCCcCCCChhHHH
Q 007335 265 VLGCSFLIFLLIARF-IGRRNKKLFWLPAIAPLLSVILSTLIVYLTKADK-HGVKIVKHIKGGLNPSSAHQLQLTGPHLG 342 (607)
Q Consensus 265 ~ig~~~l~~ll~~~~-~~~~~~~~~~ip~~~~Li~iv~~t~i~~~~~~~~-~~v~~vg~ip~gl~~p~lp~~~~~~~~~~ 342 (607)
++|++++++++.+|+ ..++.+|++|+|+|.+++++|++|+++|.++.++ +....++++|.|+|+|++|.+++..
T Consensus 252 ~~~l~~l~~L~~~k~~~~~~~~k~~~v~~~~~li~vIi~T~~~~~~~~~~~~~~~~~~~i~~g~~~~~lp~~~~~~---- 327 (665)
T KOG0236|consen 252 VLSLIFLVVLLLTKELNPKFKKKLFSVPIPFELIVVIIGTLISYIFRLEGRYGPIIVGEIPRGFPPPSLPPLSLTP---- 327 (665)
T ss_pred hhHHHHHHHHHHHHHhhhhhcccceeecccHHHHHHHHHHHHHHHhccccccCCeeeccCCCCCCCCCCCChhhhH----
Confidence 999999999999995 4455566677999999999999999999998766 4556667999999999999988754
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhCCcCCchHHHHHHHHHHHHhhhccccccccchhhhHHhhhcCCccchhhHHH
Q 007335 343 QTAKIGLISAVVALTEAIAVGRSFASIKGYHLDGNKEMVAMGFMNIVGSLTSCYVATGSFSRTAVNFSAGCQTVVSNIVM 422 (607)
Q Consensus 343 ~~~~~~~~~aiv~~~e~i~~~~~~a~~~~~~~d~nqEl~a~G~aNi~~s~fg~~p~t~s~srS~v~~~~G~rT~la~iv~ 422 (607)
..+..++++++++++|+++++|+++++++|++|.||||+|+|++|++||||+|+|+|++++||++|.++|+|||++|+++
T Consensus 328 ~~~~~~~~i~iva~~~~iai~k~fa~~~~y~vd~nqELiAlG~~Ni~sSff~~~p~tgs~sRSav~~~sG~~T~~s~i~~ 407 (665)
T KOG0236|consen 328 QVIPDAFAIAIVALLEHIAIGKSFASLHGYKVDSNQELIALGISNILSSFFGCYPTTGSFSRSAVNIKSGGRTQVAGIVS 407 (665)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCeeCCChHHHHHHHHHHhhhhhceEcccchhhHHHHHhhcCCcchHHHHHH
Confidence 56667778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHhhchHHHHHHHHHHHhcc-cCCHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007335 423 AITVLLSLELFTSLLYYTPIAILASIILSALPG-LIDINEAINIYKVDKLDFLACIGAFLGVLFASVEIGLLAAVTISFA 501 (607)
Q Consensus 423 a~~~ll~ll~l~~l~~~iP~~vLa~ili~~~~~-li~~~~~~~l~k~~~~d~~v~~~tf~~~~~~~~~~Gi~~Gv~~s~~ 501 (607)
++++++++++++|+++|+|+|+||+|+++++.+ +++.++++.+||.+|.|+++|++|++++++.++++|+++|+++|++
T Consensus 408 ~~~vl~~l~~l~p~f~~iP~~vLaaIIi~a~~~~l~~~~~~~~lwr~~k~D~~~~~~t~~~~i~~~ve~Glligv~~s~~ 487 (665)
T KOG0236|consen 408 AALVLLALLFLGPLFYYIPKCVLAAIIISALIGMLIQLEDLKPLWRLSKIDLLIWVVTFFTTIFLSLEIGLLIGVAFSLF 487 (665)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhHHHhhhhhhhhheeCCHHHHHHHHHHhheeeEehhhhhHHHHHHHHHH
Confidence 999999999999999999999999999999999 6799999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCeeeccccCCCCccccCCCCCCCcCCCcEEEEEEccccEeEcchHHHHHHH--HHHHHhhh---hhhhhhc
Q 007335 502 KILLNAVRPGIELQGRLPRTDTYGDISQFPMAIKTPGILTIRINSALFCFANANFIRERI--MRWVTEEQ---DELEETT 576 (607)
Q Consensus 502 ~~~~~~~rp~~~~lg~~~~~~~~~~~~~~~~~~~~~~i~i~r~~g~~L~F~n~~~~~~~i--~~~~~~~~---~~~~~~~ 576 (607)
.++.|.+||+...+|++++++.|++.+||+++++.++++|+|++++ +||+|.+.+++++ .+++++++ +..++.+
T Consensus 488 ~ii~~~~~p~~~~l~~~~~t~~~~~~~~y~~~~~~~gi~i~r~~~~-l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (665)
T KOG0236|consen 488 FIILRSQRPRISLLGRIPRTNIYRDINQYRELKEIPGIKIFRISSP-LLFGNVESFEKKLERLKYLRKEEVLENSARELH 566 (665)
T ss_pred HHHHHhcCcchhhhcccCCCccccchhhcchhhccCceEEEEeccc-eeeccHHHHHHHHHHHHhhhhcccccCcccccc
Confidence 9999999999999999999999999999999999999999999999 9999999998877 36665532 1112222
Q ss_pred CCCCcEEEEEccCCCcccHHHHHHHHHHHhC
Q 007335 577 KRTIQAVIIDMSNSMNIDTSGILVLEELHKN 607 (607)
Q Consensus 577 ~~~~~~vIlD~s~v~~iD~sa~~~L~~l~~~ 607 (607)
.++.+++|+||+++++||++|+++|+|+.+|
T Consensus 567 ~~~~~~vild~s~v~~iD~~g~~~L~~l~~~ 597 (665)
T KOG0236|consen 567 ENSIHSVILDCSGVSFIDTSGASALKSLFKD 597 (665)
T ss_pred cCcceEEEEECCccchhhHHHHHHHHHHHHH
Confidence 2348999999999999999999999999875
No 2
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=100.00 E-value=3.4e-95 Score=814.20 Aligned_cols=520 Identities=49% Similarity=0.798 Sum_probs=480.4
Q ss_pred ccccccccCChhhhhhhHHHHHHHHHHHHhhHHHHHHhhCCCchhhHHHhhhhHHHHHHhcCCCccccchhHHHHHHHHH
Q 007335 83 PILNWGRNYKASKFKSDLMAGLTLASLSIPQSIGYANLAKLDPQYGLYTSVIPPLIYALMGSSREIAIGPVAVVSMLLSA 162 (607)
Q Consensus 83 Pi~~wl~~y~~~~l~~D~~aGltv~~~~iPq~~aya~laglpp~~GLyss~i~~liy~lfGss~~~~~Gp~a~~sll~~~ 162 (607)
|+++|+++|+++++++|++||+|++++.+||+||||.++|+||++|||++++|+++|++||+||++++||++.+|+++++
T Consensus 1 p~~~wl~~y~~~~l~~Di~aGltv~~~~iP~~~ayA~laglpp~~GLysa~~~~iv~alfGss~~~i~Gp~a~~sl~~~~ 80 (563)
T TIGR00815 1 PVLRWLPHYRLKKFKGDLMAGLTVGILLIPQAMAYAILAGLSPIYGLYTSFVPPFIYALFGTSRDIAIGPVAVMSLLLGS 80 (563)
T ss_pred ChhhhhhhCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhHHHHHHHHHhheecCCCcccCCHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHHHHHHhhhhhhCccccCCCCc
Q 007335 163 LMQNVQDPAADPVAYRKLVFTVTFFAGVFQSVFGLFRLGFLVDFLSHAAIVGFMAGAAIVIGLQQLKGLLGISHFTNKTD 242 (607)
Q Consensus 163 ~v~~~~~~~~~~~~~~~~a~~~t~l~Gi~~~llG~lrLg~l~~flp~~vi~Gf~~gigl~i~~~ql~~~lG~~~~~~~~~ 242 (607)
++.+.+.+...+.++.+.+.++++++|++|+++|++|+|++++|+|+||+.||++|+|++|+.+|++.++|++..+...+
T Consensus 81 ~v~~~~~~~~~~~~~~~~a~~l~~l~Gi~~~~~g~lrlG~l~~~is~~Vi~Gf~~g~a~~i~~~Ql~~~~G~~~~~~~~~ 160 (563)
T TIGR00815 81 VIARVGLQYLFDCDAIRLAFTLTLLAGIFQVILGLLRLGFLIEFLSHAVISGFMTGAAITIGLSQLKGLLGISIFNTRTD 160 (563)
T ss_pred HHHHhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC
Confidence 99988744332346788899999999999999999999999999999999999999999999999999999985434467
Q ss_pred HHHHHHHHHhhcCcC-CcchhHHHHHHHHHHHHHHHHHhhhccccccccccchhHHHHHHHHHHHHHhhcCCCCeeeeec
Q 007335 243 VVSVLGSVFSSLHHS-YWYPLNFVLGCSFLIFLLIARFIGRRNKKLFWLPAIAPLLSVILSTLIVYLTKADKHGVKIVKH 321 (607)
Q Consensus 243 ~~~~~~~~~~~l~~~-~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~ip~~~~Li~iv~~t~i~~~~~~~~~~v~~vg~ 321 (607)
+++.+.+.+.++++. .|||.++++|++++++++..|++++|+++..|.+.|.+++++++++++++.++.+++++.++|+
T Consensus 161 ~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~p~~li~vi~~~~~~~~~~~~~~~~~~~g~ 240 (563)
T TIGR00815 161 TLGVVISTWAGLPNTHNWNWCTLVIGLVLLLFLLYTKKLGKRNKKLLFAPAVAPLLVVILATLAVTIGLHKKQGVSILGH 240 (563)
T ss_pred hHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhccchhcccccHHHHHHHHHHHHHHHHccCCCCeEEEee
Confidence 777777788887660 1499999999999999999998888888877778889999999999999988888899999999
Q ss_pred ccCCCCCCCCCcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCcCCchHHHHHHHHHHHHhhhccccccccc
Q 007335 322 IKGGLNPSSAHQLQLTGPHLGQTAKIGLISAVVALTEAIAVGRSFASIKGYHLDGNKEMVAMGFMNIVGSLTSCYVATGS 401 (607)
Q Consensus 322 ip~gl~~p~lp~~~~~~~~~~~~~~~~~~~aiv~~~e~i~~~~~~a~~~~~~~d~nqEl~a~G~aNi~~s~fg~~p~t~s 401 (607)
+|.|+|.+.+|.++ +..+.+.++.++.+++++++|+++++|++++++||++|+|||++++|++|+++|+|||+|++++
T Consensus 241 ip~g~p~~~~~~~~--~~~~~~l~~~a~~ia~v~~~e~l~~a~~~~~~~~~~~d~n~El~a~G~~N~~~~~fg~~p~~~s 318 (563)
T TIGR00815 241 IPSGLSFFPPITLD--WELLPTLAPDAIAIAIVGLIESIAIARSFARMTGYKIDANQELVAQGIANIVGSFFSCYPATGS 318 (563)
T ss_pred cCCCCCCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHhhHHHHHHHHhCccCCCCc
Confidence 99999887777654 4567889999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHhhhcCCccchhhHHHHHHHHHHHHHhHHHHhhchHHHHHHHHHHHhcccCCHHHHHHHhccCccchhHHHHHHH
Q 007335 402 FSRTAVNFSAGCQTVVSNIVMAITVLLSLELFTSLLYYTPIAILASIILSALPGLIDINEAINIYKVDKLDFLACIGAFL 481 (607)
Q Consensus 402 ~srS~v~~~~G~rT~la~iv~a~~~ll~ll~l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l~k~~~~d~~v~~~tf~ 481 (607)
++||++|.++|+|||++++++++++++++++++|+++|+|+++||+++++++++|+++++++++||.++.|+.+|++|++
T Consensus 319 ~srs~~~~~~G~~t~~a~i~~~~~~l~~~l~~~~~l~~iP~~~la~ili~~~~~l~~~~~~~~~~~~~~~d~~i~~~~~~ 398 (563)
T TIGR00815 319 LSRTAVNAKAGCRTQLSGVVTAIVVLLVLLVLTPLFYYIPQAALAAIIISAVRGLIDYKELYKLWKADKMDFVVWLVTFF 398 (563)
T ss_pred chHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHhcccCHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCeeeccccCCCCccccCCCCCCCcCCCcEEEEEEccccEeEcchHHHHHHH
Q 007335 482 GVLFASVEIGLLAAVTISFAKILLNAVRPGIELQGRLPRTDTYGDISQFPMAIKTPGILTIRINSALFCFANANFIRERI 561 (607)
Q Consensus 482 ~~~~~~~~~Gi~~Gv~~s~~~~~~~~~rp~~~~lg~~~~~~~~~~~~~~~~~~~~~~i~i~r~~g~~L~F~n~~~~~~~i 561 (607)
++++.|++.|+++|+++|++.+++|++||+...+|++++++.|||.+++++.++.|+++|+|++|+ |||+|++++++++
T Consensus 399 ~~~~~~~~~Gi~vGv~~s~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~I~r~~g~-L~F~na~~~~~~l 477 (563)
T TIGR00815 399 GVVFTSIEIGLLVGVALSAAFLLLRIARPRGAVLGRVPGTEVYRSIKQYPNARPPPGILVYRVDGP-LYFANAEDLKDRL 477 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeeecCCCCcccchhhCcccCCCCCEEEEEcCCc-eEeCcHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999888899999999999 9999999999999
Q ss_pred HHHHHhhhhhhhhhcCCCCcEEEEEccCCCcccHHHHHHHHHHHhC
Q 007335 562 MRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKN 607 (607)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iD~sa~~~L~~l~~~ 607 (607)
+++++++.+ ++.+.++++++|+||+.|+++|+||+++|+|++++
T Consensus 478 ~~~~~~~~~--~~~~~~~~~~vIlD~~~V~~iDsSg~~~L~~l~~~ 521 (563)
T TIGR00815 478 LKRIEDETR--RELERPPLQVVILDMSAVPHLDTSGIHALEELRKE 521 (563)
T ss_pred HHHHhhhcc--ccccCCCceEEEEECCCCCcchHHHHHHHHHHHHH
Confidence 886654221 11223357999999999999999999999999864
No 3
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.9e-87 Score=738.79 Aligned_cols=496 Identities=31% Similarity=0.495 Sum_probs=461.5
Q ss_pred hhcccccccccccCChhhhhhhHHHHHHHHHHHHhhHHHHHHhhCCCchhhHHHhhhhHHHHHHhcCCCccccchhHHHH
Q 007335 78 LRGLFPILNWGRNYKASKFKSDLMAGLTLASLSIPQSIGYANLAKLDPQYGLYTSVIPPLIYALMGSSREIAIGPVAVVS 157 (607)
Q Consensus 78 ~~~~~Pi~~wl~~y~~~~l~~D~~aGltv~~~~iPq~~aya~laglpp~~GLyss~i~~liy~lfGss~~~~~Gp~a~~s 157 (607)
+.+++|..+|.+.|+.+|+++|++||+|+|++++||+||||..+|+||++|||++++++++|++||+||++++||++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~l~~Dl~AGltva~valP~ama~a~~aGv~p~~GLyas~i~~~v~alfGgs~~~i~GPt~a~~ 82 (554)
T COG0659 3 LRSEIPTLKWLPYYFRSWLRGDLLAGLTVAAVALPLAMAFAIAAGVPPEAGLYASIVAGIIYALFGGSRGLISGPTGAFA 82 (554)
T ss_pred chhhccHHHhccccchhhhHHHHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCccceeccchhhH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHHHHHHhhhhhhCcccc
Q 007335 158 MLLSALMQNVQDPAADPVAYRKLVFTVTFFAGVFQSVFGLFRLGFLVDFLSHAAIVGFMAGAAIVIGLQQLKGLLGISHF 237 (607)
Q Consensus 158 ll~~~~v~~~~~~~~~~~~~~~~a~~~t~l~Gi~~~llG~lrLg~l~~flp~~vi~Gf~~gigl~i~~~ql~~~lG~~~~ 237 (607)
+++++.+.... +.+++.++++++++|++|+++|++|||++++|+|+||+.||++|+|+.|+.+|++.++|++..
T Consensus 83 ~v~a~~i~~~~------~~g~~~~~~~tllaGv~~i~~G~lRLG~li~fip~pVl~Gf~~Giai~I~~~Ql~~~~G~~~~ 156 (554)
T COG0659 83 VVLAAVIASLV------ETGLALAFLATLLAGVFQILLGLLRLGRLIRFIPRPVLIGFTAGIAILIILTQLPVLLGLASK 156 (554)
T ss_pred HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 99999999543 345889999999999999999999999999999999999999999999999999999999853
Q ss_pred CCCCcHHHHHHHHHhhcCcCCcchhHHHHHHHHHHHHHHHHHhhhccccccccccchhHHHHHHHHHHHHHhhcCC--CC
Q 007335 238 TNKTDVVSVLGSVFSSLHHSYWYPLNFVLGCSFLIFLLIARFIGRRNKKLFWLPAIAPLLSVILSTLIVYLTKADK--HG 315 (607)
Q Consensus 238 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~ip~~~~Li~iv~~t~i~~~~~~~~--~~ 315 (607)
. .++++.+..++++..+ +||.+++++++++++++.++++.+|+| +++++++++|.++|.++.+. +|
T Consensus 157 ~--~~~~~~~~~l~~~~~~--~~~~~~~lg~~~l~il~~~~~~~~~~P--------~~liaiv~~t~i~~~~~~~~~~~G 224 (554)
T COG0659 157 V--SGFWAKVSALFTVLLT--INLATLLLGLLTLAILLFLPRLTPRIP--------SPLIALVLGTLIVWIFPLDSLRYG 224 (554)
T ss_pred c--cchHHHHHHHHHhccc--ccHHHHHHHHHHHHHHHHccchhhhCC--------cHHHHHHHHHHHHHHhcCCchhcc
Confidence 3 3377888889999999 999999999999999999887665544 78999999999999998663 66
Q ss_pred eeeeecccCCCCCCCCCcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCcCCchHHHHHHHHHHHHhhhccc
Q 007335 316 VKIVKHIKGGLNPSSAHQLQLTGPHLGQTAKIGLISAVVALTEAIAVGRSFASIKGYHLDGNKEMVAMGFMNIVGSLTSC 395 (607)
Q Consensus 316 v~~vg~ip~gl~~p~lp~~~~~~~~~~~~~~~~~~~aiv~~~e~i~~~~~~a~~~~~~~d~nqEl~a~G~aNi~~s~fg~ 395 (607)
++.|++|.++|.+.+|+++ .+.+.+.++.++.+++++++|++.++++++.++|+++|.||||+|+|++|++++||||
T Consensus 225 -~i~~~lp~~~~~~~~P~~~--~~~~~~l~~~al~la~lg~iesllta~~~~~~~~~~~d~nrELiaqGiaNi~sglfgg 301 (554)
T COG0659 225 -EIPGSLPSGLPHFRLPNVS--LSLLLALLPYALALALLGLLESLLTAVSFDGMTGTKHDSNRELIAQGIANIASGLFGG 301 (554)
T ss_pred -cCcccCCcCCCcccCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHhhHHHHHHHHhCC
Confidence 7889999999999999877 4568889999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhhHHhhhcCCccchhhHHHHHHHHHHHHHhHHHHhhchHHHHHHHHHHHhcccCCHHHHHHH-hccCccchh
Q 007335 396 YVATGSFSRTAVNFSAGCQTVVSNIVMAITVLLSLELFTSLLYYTPIAILASIILSALPGLIDINEAINI-YKVDKLDFL 474 (607)
Q Consensus 396 ~p~t~s~srS~v~~~~G~rT~la~iv~a~~~ll~ll~l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l-~k~~~~d~~ 474 (607)
+|+||+++||++|.++|+|||+|++++++++++++++++|+++|||+|+||+++++++++|+|++.++.+ +|.+|.|+.
T Consensus 302 ~p~~g~~srS~~nv~sGarT~lsgi~~a~~lll~l~~~~~~~~~IP~a~Laavli~v~~~l~~~~~~~~~~~~~~~~e~~ 381 (554)
T COG0659 302 IPATGSISRSAINIKSGARTRLSGIIHAALLLLLLLFLAPLVSYIPLAALAAVLILVGWGLLDWSLLKPLLRKLPRGELL 381 (554)
T ss_pred ccccchhHHHHHHHHhCCcChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhccHHHHHHHHhcCCchhHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999884 458999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCeeeccccCCCCccccCCCCCCCcCCCcEEEEEEccccEeEcch
Q 007335 475 ACIGAFLGVLFASVEIGLLAAVTISFAKILLNAVRPGIELQGRLPRTDTYGDISQFPMAIKTPGILTIRINSALFCFANA 554 (607)
Q Consensus 475 v~~~tf~~~~~~~~~~Gi~~Gv~~s~~~~~~~~~rp~~~~lg~~~~~~~~~~~~~~~~~~~~~~i~i~r~~g~~L~F~n~ 554 (607)
++++|++++++.+++.|+.+|+++|++.+++|.+||+...+++.++++. ++.++++..++.|++.++|++|| +||+|+
T Consensus 382 v~~~t~~~tv~~~l~~GV~vGi~ls~~~~i~r~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~ri~gp-lfF~~~ 459 (554)
T COG0659 382 VLLTTALLTVFFDLVIGVVVGILLACLLFIRRISRPSIVVLGRVPGPAG-SDNALKPLDEIGPGVLVYRLSGP-LFFGNA 459 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHhhccCCCccc-ccccccccccCCCCeEEEEecCc-eEEeeH
Confidence 9999999999999999999999999999999999999999999887765 67788888889999999999999 999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhcCCCCcEEEEEccCCCcccHHHHHHHHHHHhC
Q 007335 555 NFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKN 607 (607)
Q Consensus 555 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iD~sa~~~L~~l~~~ 607 (607)
+++++++.+..++ +.+.+|+|+++++++|.|+.++|+|+.++
T Consensus 460 ~~~~~~i~~~~~~-----------~~~~~il~~~~v~~iD~ta~~al~~~~~~ 501 (554)
T COG0659 460 DRLERALLGLIEE-----------RPERVILDLKSVPYIDASAAEALEDLIKE 501 (554)
T ss_pred HHHHHHHHHHHhc-----------cCCEEEEEcccCCcCChhHHHHHHHHHHH
Confidence 9999999874321 57899999999999999999999998763
No 4
>PRK11660 putative transporter; Provisional
Probab=100.00 E-value=1.4e-84 Score=728.71 Aligned_cols=476 Identities=22% Similarity=0.356 Sum_probs=426.3
Q ss_pred cccccCChhhhhhhHHHHHHHHHHHHhhHHHHHHhhCCCchhhHHHhhhhHHHHHHhcCCCccccchhHHHHHHHHHHHh
Q 007335 86 NWGRNYKASKFKSDLMAGLTLASLSIPQSIGYANLAKLDPQYGLYTSVIPPLIYALMGSSREIAIGPVAVVSMLLSALMQ 165 (607)
Q Consensus 86 ~wl~~y~~~~l~~D~~aGltv~~~~iPq~~aya~laglpp~~GLyss~i~~liy~lfGss~~~~~Gp~a~~sll~~~~v~ 165 (607)
+|+|+|+++++++|++||+|++++.+||+||||.+||+||+|||||+++|+++|++||+||++++||++.+++++++.++
T Consensus 19 ~wl~~y~~~~l~~D~iAGltv~~~~iPq~mayA~lag~pp~~GLysa~~~~~vyal~Gss~~~~~Gp~a~~~~~~~~~~~ 98 (568)
T PRK11660 19 CWKEKYTAARFTRDLIAGITVGIIAIPLAMALAIASGVPPQYGLYTAAVAGIVIALTGGSRFSVSGPTAAFVVILYPVSQ 98 (568)
T ss_pred HHHhcCCHHhhhHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCcccChhHHHHHHHHHHHH
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred hhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHHHHHHhhhhhhCccccCCCCcHHH
Q 007335 166 NVQDPAADPVAYRKLVFTVTFFAGVFQSVFGLFRLGFLVDFLSHAAIVGFMAGAAIVIGLQQLKGLLGISHFTNKTDVVS 245 (607)
Q Consensus 166 ~~~~~~~~~~~~~~~a~~~t~l~Gi~~~llG~lrLg~l~~flp~~vi~Gf~~gigl~i~~~ql~~~lG~~~~~~~~~~~~ 245 (607)
+.+ .+.+..+++++|++|+++|++|+|++++|+|+||+.||++|+|++|+.+|++.++|++..+...++++
T Consensus 99 ~~~---------~~~~~~~~~l~Gii~~l~gllrlG~l~~fip~pVi~Gf~~g~al~I~~~Ql~~~lG~~~~~~~~~~~~ 169 (568)
T PRK11660 99 QFG---------LAGLLVATLMSGIILILMGLARLGRLIEYIPLSVTLGFTSGIGIVIATLQIKDFFGLQMAHVPEHYLE 169 (568)
T ss_pred Hhh---------HHHHHHHHHHHHHHHHHHHHHhhhHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence 543 34567789999999999999999999999999999999999999999999999999985444567888
Q ss_pred HHHHHHhhcCcCCcchhHHHHHHHHHHHHHHHHHhhhccccccccccchhHHHHHHHHHHHHHhhcCCCCeeeeec----
Q 007335 246 VLGSVFSSLHHSYWYPLNFVLGCSFLIFLLIARFIGRRNKKLFWLPAIAPLLSVILSTLIVYLTKADKHGVKIVKH---- 321 (607)
Q Consensus 246 ~~~~~~~~l~~~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~ip~~~~Li~iv~~t~i~~~~~~~~~~v~~vg~---- 321 (607)
.+.++++++++ +||.++++|++++++++.++++.+|. | .++++++++|++++.++...++++.+|+
T Consensus 170 ~l~~~~~~l~~--~~~~~~~~~~~~l~lll~~~~~~~~i------P--~~li~iiv~t~~~~~~~~~~~~v~~vg~~~~~ 239 (568)
T PRK11660 170 KVGALFQALPT--INWGDALIGIVTLGVLILWPRLKIRL------P--GHLPALLAGTAVMGVLNLLGGHVATIGSRFHY 239 (568)
T ss_pred HHHHHHHhhcc--CCHHHHHHHHHHHHHHHHHHhhcccC------c--hHHHHHHHHHHHHHHHhccCCCceeecccccc
Confidence 89999999999 99999999999999998876544433 2 7799999999999998876677777775
Q ss_pred ----------ccCCCCCCCCCc---------CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCcCCchHHHHH
Q 007335 322 ----------IKGGLNPSSAHQ---------LQLTGPHLGQTAKIGLISAVVALTEAIAVGRSFASIKGYHLDGNKEMVA 382 (607)
Q Consensus 322 ----------ip~gl~~p~lp~---------~~~~~~~~~~~~~~~~~~aiv~~~e~i~~~~~~a~~~~~~~d~nqEl~a 382 (607)
+|.++|++.+|. .++++..+.+.++.++.+++++++|++.+++.+++++++++|.||||+|
T Consensus 240 ~~~~g~~~~~ip~~~p~~~~p~~~~~~~~~~~~~~~~~~~~ll~~a~~iaiv~~iesl~~~~~~~~~~~~~~d~n~EL~a 319 (568)
T PRK11660 240 VLADGSQGNGIPPLLPQFVLPWNLPGADGQPFTLSWDLIRALLPAAFSMAMLGAIESLLCAVVLDGMTGTKHSANSELVG 319 (568)
T ss_pred cccccccccCCCCCCCCCCCCccccccccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHH
Confidence 666777666663 1245566778888999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccccccccchhhhHHhhhcCCccchhhHHHHHHHHHHHHHhHHHHhhchHHHHHHHHHHHhcccCCHHHH
Q 007335 383 MGFMNIVGSLTSCYVATGSFSRTAVNFSAGCQTVVSNIVMAITVLLSLELFTSLLYYTPIAILASIILSALPGLIDINEA 462 (607)
Q Consensus 383 ~G~aNi~~s~fg~~p~t~s~srS~v~~~~G~rT~la~iv~a~~~ll~ll~l~~l~~~iP~~vLa~ili~~~~~li~~~~~ 462 (607)
+|++|++||+|||+|++++++||++|.++|+|||++++++++++++++++++|+++|+|+++||+++++++++|++++..
T Consensus 320 ~G~aNi~~~~fgg~p~~~s~srSa~n~~aGarT~la~iv~a~~~ll~ll~l~~ll~~iP~~vLa~ili~~~~~m~~~~~~ 399 (568)
T PRK11660 320 QGLGNIVAPFFGGITATAAIARSAANVRAGATSPISAVIHALLVLLALLVLAPLLSYLPLSAMAALLLMVAWNMSEAHKV 399 (568)
T ss_pred HhHHHHHHHHhCcccccchHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHhc-cCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCeeeccccCCCCccccCCCCCCCcCCCcEEE
Q 007335 463 INIYK-VDKLDFLACIGAFLGVLFASVEIGLLAAVTISFAKILLNAVRPGIELQGRLPRTDTYGDISQFPMAIKTPGILT 541 (607)
Q Consensus 463 ~~l~k-~~~~d~~v~~~tf~~~~~~~~~~Gi~~Gv~~s~~~~~~~~~rp~~~~lg~~~~~~~~~~~~~~~~~~~~~~i~i 541 (607)
+++|| .+|.|+.+|+.+++.+++.+++.|+++|+++|++.+++|++|++ +.++ .++ .++.+++++
T Consensus 400 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~Gi~~s~~~~~~~~~~~~-----~~~~------~~~---~~~~~~i~i 465 (568)
T PRK11660 400 VDLLRHAPKDDIIVMLLCMSLTVLFDMVIAISVGIVLASLLFMRRIAEMT-----RLAP------ISV---QDVPDDVLV 465 (568)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcc-----cccc------ccc---ccCCCcEEE
Confidence 77776 68899999999999999999999999999999999999998864 2221 111 234579999
Q ss_pred EEEccccEeEcchHHHHHHHHHHHHhhhhhhhhhcCCCCcEEEEEccCCCcccHHHHHHHHHHHhC
Q 007335 542 IRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKN 607 (607)
Q Consensus 542 ~r~~g~~L~F~n~~~~~~~i~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iD~sa~~~L~~l~~~ 607 (607)
+|++|+ |||+|++++++++++.. ++.++||+||+.++++|+||+++|+++.|+
T Consensus 466 v~~~g~-L~F~n~~~l~~~l~~~~------------~~~~~VVlD~~~V~~iDssg~~~L~~l~~~ 518 (568)
T PRK11660 466 LRINGP-LFFAAAERLFTELESRT------------EGKRIVVLQWDAVPVLDAGGLDAFQRFVKR 518 (568)
T ss_pred EEeCCe-eeeeeHHHHHHHHHhhC------------CCCCEEEEEcCCCCcccHHHHHHHHHHHHH
Confidence 999999 99999999999886521 347899999999999999999999999874
No 5
>PF00916 Sulfate_transp: Sulfate transporter family; InterPro: IPR011547 A number of proteins involved in the transport of sulphate across a membrane as well as some yet uncharacterised proteins have been shown [, ] to be evolutionary related. These proteins are: Neurospora crassa sulphate permease II (gene cys-14). Yeast sulphate permeases (genes SUL1 and SUL2). Rat sulphate anion transporter 1 (SAT-1). Mammalian DTDST, a probable sulphate transporter which, in human, is involved in the genetic disease, diastrophic dysplasia (DTD). Sulphate transporters 1, 2 and 3 from the legume Stylosanthes hamata. Human pendrin (gene PDS), which is involved in a number of hearing loss genetic diseases. Human protein DRA (Down-Regulated in Adenoma). Soybean early nodulin 70. Escherichia coli hypothetical protein ychM. Caenorhabditis elegans hypothetical protein F41D9.5. These proteins are highly hydrophobic and seem to contain about 12 transmembrane domains.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=100.00 E-value=4.2e-49 Score=406.12 Aligned_cols=280 Identities=38% Similarity=0.602 Sum_probs=256.5
Q ss_pred HHHhhhhhhhhhccHHHHHHHHHHHHHHHHHHhhhhhhCccccCCCCcHHHHHHHHHhhcCcCCcchhHHHHHHHHHHHH
Q 007335 195 FGLFRLGFLVDFLSHAAIVGFMAGAAIVIGLQQLKGLLGISHFTNKTDVVSVLGSVFSSLHHSYWYPLNFVLGCSFLIFL 274 (607)
Q Consensus 195 lG~lrLg~l~~flp~~vi~Gf~~gigl~i~~~ql~~~lG~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ig~~~l~~l 274 (607)
||++|+|++++|+|+||+.||++|+|++++.+|++.++|++..+...+....+.++++.+++. +||.++++|+++++++
T Consensus 1 lGllrlG~l~~~ip~pVi~Gf~~g~ai~I~~~Ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l 79 (280)
T PF00916_consen 1 LGLLRLGFLVRFIPRPVISGFLAGIAILIIFSQLPNLLGIPVVPSHEGLFSFIRALFQLISTI-TNWPTLAIGLVALVFL 79 (280)
T ss_pred CccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhc-cchhhhhhhhHHHHHH
Confidence 589999999999999999999999999999999999999985444455566666667666652 4899999999999999
Q ss_pred HHHHHhhhccccccccccchhHHHHHHHHHHHHHhhcCCCCeeeeecccCCCCCCCCCcCCCChhHHHHHHHHHHHHHHH
Q 007335 275 LIARFIGRRNKKLFWLPAIAPLLSVILSTLIVYLTKADKHGVKIVKHIKGGLNPSSAHQLQLTGPHLGQTAKIGLISAVV 354 (607)
Q Consensus 275 l~~~~~~~~~~~~~~ip~~~~Li~iv~~t~i~~~~~~~~~~v~~vg~ip~gl~~p~lp~~~~~~~~~~~~~~~~~~~aiv 354 (607)
...++++++++++++.+.|.+++++++++++++.++.+.++++.+|++|.++|+|.+|+.+++.+.+.+.++.++.++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~p~~li~vv~~~~~~~~~~~~~~~v~~~~~i~~~lp~~~~p~~~~~~~~~~~~~~~a~~ia~v 159 (280)
T PF00916_consen 80 LIIRLLPKRLPSRFWPPIPAPLIVVVLGTLLSWLFLLDKYGVAIVGEIPSGLPPPSLPSFDISWSLILDLLPTALAIAIV 159 (280)
T ss_pred hhhhhhhhhccccccccccccceeeehhhhhhhhhhhccccccccccccccCccccCcccccccccccccchhHHHHHHH
Confidence 99998888788777888889999999999999999888889999999999999999995444445677888889999999
Q ss_pred HHHHHHHHHHHHhhhhCCcCCchHHHHHHHHHHHHhhhccccccccchhhhHHhhhcCCccchhhHHHHHHHHHHHHHhH
Q 007335 355 ALTEAIAVGRSFASIKGYHLDGNKEMVAMGFMNIVGSLTSCYVATGSFSRTAVNFSAGCQTVVSNIVMAITVLLSLELFT 434 (607)
Q Consensus 355 ~~~e~i~~~~~~a~~~~~~~d~nqEl~a~G~aNi~~s~fg~~p~t~s~srS~v~~~~G~rT~la~iv~a~~~ll~ll~l~ 434 (607)
+++|++.++++++++++|++|.|||++++|++|+++|+|||+|+++++|||++|+++|+|||+|++++++++++++++++
T Consensus 160 ~~~~s~~~~~~~~~~~~~~~d~n~El~a~G~aNi~s~~~gg~p~~~s~srs~~~~~~Ga~t~~s~~~~~~~~l~~l~~~~ 239 (280)
T PF00916_consen 160 GFIESLLIAKSIAKKTGYRIDPNQELIALGLANIVSGLFGGMPGSGSFSRSAVNYRAGARTRLSGLISALFVLLVLLFLA 239 (280)
T ss_pred HHHHHHHhhhhhcccccccCCcHHHHHHhhhccccchhhcccccccccccchHHHhcCcceeehhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhchHHHHHHHHHHHhcccCCHHHHHHHhccCccchhH
Q 007335 435 SLLYYTPIAILASIILSALPGLIDINEAINIYKVDKLDFLA 475 (607)
Q Consensus 435 ~l~~~iP~~vLa~ili~~~~~li~~~~~~~l~k~~~~d~~v 475 (607)
|+++|+|+++||+++++++++|+|+++++++||.+|.|+++
T Consensus 240 ~~l~~iP~~~La~ili~~~~~l~~~~~~~~~~~~~~~d~~i 280 (280)
T PF00916_consen 240 PLLAYIPKAVLAAILIVVGISLIDWSSLRRLWRVSKADFLI 280 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCChhheEC
Confidence 99999999999999999999999999999999999999864
No 6
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=99.96 E-value=4.7e-26 Score=246.43 Aligned_cols=321 Identities=18% Similarity=0.187 Sum_probs=240.3
Q ss_pred HHHHHhhHHHHHHhhCCCc-------hhhHHHhhhhHHHHH----HhcCCCccccchhHHHHHHHHHHHhhhcCCCCChH
Q 007335 107 ASLSIPQSIGYANLAKLDP-------QYGLYTSVIPPLIYA----LMGSSREIAIGPVAVVSMLLSALMQNVQDPAADPV 175 (607)
Q Consensus 107 ~~~~iPq~~aya~laglpp-------~~GLyss~i~~liy~----lfGss~~~~~Gp~a~~sll~~~~v~~~~~~~~~~~ 175 (607)
+.+.+|.-++-+ .|+|+ +..++++.++++++. .+|+..++..||....-..+.....+
T Consensus 11 ~~i~~p~i~~~a--~gl~~~~~~~~i~at~l~sgi~tllq~~~~~~~G~~~P~~~g~s~a~~~~~~~~~~~--------- 79 (406)
T TIGR03173 11 GAVAVPLIVGGA--LGLSAEQTAYLISADLFACGIATLIQTLGIGPFGIRLPVVQGVSFAAVGPMIAIGAG--------- 79 (406)
T ss_pred HHHHHHHHHHhh--cCCCHHHHHHHHHHHHHHHHHHHHHHhccccccCCccceeecCcHHHHHHHHHHhhh---------
Confidence 456667666543 58887 577889999999997 67999999999976433322222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHHHHHHhhhhhhCccccCCCCcHHHHHHHHHhhcC
Q 007335 176 AYRKLVFTVTFFAGVFQSVFGLFRLGFLVDFLSHAAIVGFMAGAAIVIGLQQLKGLLGISHFTNKTDVVSVLGSVFSSLH 255 (607)
Q Consensus 176 ~~~~~a~~~t~l~Gi~~~llG~lrLg~l~~flp~~vi~Gf~~gigl~i~~~ql~~~lG~~~~~~~~~~~~~~~~~~~~l~ 255 (607)
..++.+.++.+++|++++++|. +++++.+++|+.+++.++..+|+.+...+++...|... ..+
T Consensus 80 ~~~~~~~ga~~v~Gii~illg~-~~~~l~~~iPp~v~G~~i~~IGl~l~~~~~~~~~g~~~---~~~------------- 142 (406)
T TIGR03173 80 GGLGAIFGAVIVAGLFVILLAP-FFSKLVRFFPPVVTGTVITLIGLSLMPVAINWAAGGAG---APD------------- 142 (406)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHhccCCC---ccc-------------
Confidence 2378899999999999999994 68999999999888889999999999888887765321 011
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHHhhhccccccccccchhHHHHHHHHHHHHHhhcCCCCeeeeecccC-CCCC---CCC
Q 007335 256 HSYWYPLNFVLGCSFLIFLLIARFIGRRNKKLFWLPAIAPLLSVILSTLIVYLTKADKHGVKIVKHIKG-GLNP---SSA 331 (607)
Q Consensus 256 ~~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~ip~~~~Li~iv~~t~i~~~~~~~~~~v~~vg~ip~-gl~~---p~l 331 (607)
. .++.+..+++++++++++.+++.|+. ++.++.++++++++++++.++..+ .+.+++.|. .+|. +..
T Consensus 143 ~--~~~~~~~l~l~~l~~~il~~~~~~~~-----~~~~aiLi~ivvg~iva~~~g~~~--~~~i~~~~~~~~P~~~~~~~ 213 (406)
T TIGR03173 143 F--GSPQNLGLALLTLVIILLLNRFGKGF-----LRSIAVLLGLVVGTIVAAALGMVD--FSGVAEAPWFALPTPFHFGA 213 (406)
T ss_pred c--cchHHHHHHHHHHHHHHHHHHHhhhH-----HHHhHHHHHHHHHHHHHHHhcCCC--chhhccCCeeeCCCCCcCCC
Confidence 1 45566678887777776665444432 223378999999999999887422 222332221 2222 334
Q ss_pred CcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCcCCc---hHHHHHHHHHHHHhhhccccccccchhh-hHH
Q 007335 332 HQLQLTGPHLGQTAKIGLISAVVALTEAIAVGRSFASIKGYHLDG---NKEMVAMGFMNIVGSLTSCYVATGSFSR-TAV 407 (607)
Q Consensus 332 p~~~~~~~~~~~~~~~~~~~aiv~~~e~i~~~~~~a~~~~~~~d~---nqEl~a~G~aNi~~s~fg~~p~t~s~sr-S~v 407 (607)
|++++ . .+...+.++++++.|+++..++.++..|++.|. |||+.++|++|+++++||++|+|+ +++ +++
T Consensus 214 P~f~~--~----~~~~~~~~~lv~~~esig~~~a~~~~~g~~~~~~~~~~~l~~~Gi~~i~aglfG~~p~t~-~~~~~~~ 286 (406)
T TIGR03173 214 PTFDL--V----AILTMIIVYLVSMVETTGDFLALGEITGRPITEKDLAGGLRADGLGSALGGLFNTFPYTS-FSQNVGL 286 (406)
T ss_pred CeeCH--H----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhccchHHhccHHHHHHHHhCCCCCcc-hhhhHHH
Confidence 44433 2 233345678899999999999999998887654 799999999999999999999886 555 568
Q ss_pred hhhcCCccchhhHHHHHHHHHHHHH--hHHHHhhchHHHHHHHHHHHhcccCCHHHHHHHhccCccc
Q 007335 408 NFSAGCQTVVSNIVMAITVLLSLEL--FTSLLYYTPIAILASIILSALPGLIDINEAINIYKVDKLD 472 (607)
Q Consensus 408 ~~~~G~rT~la~iv~a~~~ll~ll~--l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l~k~~~~d 472 (607)
+..+|+|||++++++|+++++..++ ++++++++|+++++++++. .++++....++.++|.+..|
T Consensus 287 ~~~tg~~sr~~~~~~~~~lil~~l~~~~~~l~~~iP~~vlgg~~l~-~~~~i~~~g~~~l~~~~~~~ 352 (406)
T TIGR03173 287 VQLTGVKSRYVVAAAGVILVLLGLFPKLAALVASIPQPVLGGAGLV-MFGMVAASGIRILSKVDFDR 352 (406)
T ss_pred HHHhCCCchHhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH-HHHHHHHHHHHHHHhCcccC
Confidence 8889999999999999999888776 8999999999999998774 88999888888887766543
No 7
>COG2252 Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism]
Probab=99.95 E-value=7.4e-25 Score=230.81 Aligned_cols=385 Identities=18% Similarity=0.251 Sum_probs=287.6
Q ss_pred HhhhcccccccccccCChhhhhhhHHHHHHHHHHHHhhHHHHHHh--------hCCCch----hhHHHhhhhHHHHHHhc
Q 007335 76 SFLRGLFPILNWGRNYKASKFKSDLMAGLTLASLSIPQSIGYANL--------AKLDPQ----YGLYTSVIPPLIYALMG 143 (607)
Q Consensus 76 ~~~~~~~Pi~~wl~~y~~~~l~~D~~aGltv~~~~iPq~~aya~l--------aglpp~----~GLyss~i~~liy~lfG 143 (607)
+.++++|...| +-.+++.|++||+|+.+ +|+|-.. +|.|.. ....+++++++.++++.
T Consensus 4 ~~~~~~F~l~~-----~~t~vrtEiiAGlTTFl-----tM~YIl~VnP~IL~~ag~~~~av~~AT~l~a~~gs~~mgl~A 73 (436)
T COG2252 4 GDLDRFFKLKE-----HGTTVRTEVIAGLTTFL-----TMAYIVFVNPQILGAAGMPVGAVFVATCLAAAIGSIAMGLYA 73 (436)
T ss_pred hHHHHHhCccc-----cCchHHHHHHHHHHHHH-----HHHHhheecHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 45666666553 34788999999999998 6777432 355543 23456888999999998
Q ss_pred CCCccccchhHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhhccHHHHHHHHHHHHHH
Q 007335 144 SSREIAIGPVAVVSMLLSALMQNVQDPAADPVAYRKLVFTVTFFAGVFQSVFGLFRLG-FLVDFLSHAAIVGFMAGAAIV 222 (607)
Q Consensus 144 ss~~~~~Gp~a~~sll~~~~v~~~~~~~~~~~~~~~~a~~~t~l~Gi~~~llG~lrLg-~l~~flp~~vi~Gf~~gigl~ 222 (607)
..|....-..+..+....+++...+ ..|+.+..+.|++|++++++++++++ ++++.+|+++..|..+|+|++
T Consensus 74 n~P~alapgmglnAfFaftvv~~~g-------i~wq~AL~aVF~sGiif~ils~t~iR~~ii~~IP~~lk~ai~aGIGlF 146 (436)
T COG2252 74 NLPIALAPGMGLNAFFAFTVVLGMG-------LSWQVALGAVFLSGIIFLLLSLTGIREWIINAIPRSLKLAIGAGIGLF 146 (436)
T ss_pred cCchhhcchhhHHHHHHHHHHHhcC-------CcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 8554433346777888888887765 23899999999999999999999996 589999999999999999999
Q ss_pred HHHHhhhhhhCccccCCCCcHHHHHHHHHhhcCcCCcchhHHHHHHHHHHHHHHHHHhhhccccccccccchhHHHHHHH
Q 007335 223 IGLQQLKGLLGISHFTNKTDVVSVLGSVFSSLHHSYWYPLNFVLGCSFLIFLLIARFIGRRNKKLFWLPAIAPLLSVILS 302 (607)
Q Consensus 223 i~~~ql~~~lG~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~ip~~~~Li~iv~~ 302 (607)
|..-.++ -.|+-. .++.. .-.+.+ .+....+++++.+++...... +|.+. +.+++++..
T Consensus 147 ia~IgL~-~~Givv-~~~~t--------lv~LG~--~~~p~vll~i~G~~l~~~L~~--~~i~G-------aili~i~~~ 205 (436)
T COG2252 147 IALIGLK-NAGIVV-ANPAT--------LVALGD--FTSPGVLLAILGLLLIIVLVS--RKIKG-------AILIGILVT 205 (436)
T ss_pred HHHHHHh-hCCeEE-ecCcc--------eEEeec--CCCchHHHHHHHHHHHHHHHH--hhccH-------hhhHHHHHH
Confidence 9987777 445421 11111 111222 333444555555444443322 44443 568889999
Q ss_pred HHHHHHhhcCCCCeeeeecccCCCCCCCCCcCCCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCC------cCC
Q 007335 303 TLIVYLTKADKHGVKIVKHIKGGLNPSSAHQLQLTG-PHLGQTAKIGLISAVVALTEAIAVGRSFASIKGY------HLD 375 (607)
Q Consensus 303 t~i~~~~~~~~~~v~~vg~ip~gl~~p~lp~~~~~~-~~~~~~~~~~~~~aiv~~~e~i~~~~~~a~~~~~------~~d 375 (607)
+++++..+.....-...+..|.-. +...+.|+.. ......++..+....+.+.|++.+-...+++.|. ..|
T Consensus 206 t~~g~~~g~~~~~~~~~~~~p~~~--~~~~~~d~~~~~~~~~~~~~if~f~~~~~FD~~GTl~gv~~~ag~~~~~g~~~~ 283 (436)
T COG2252 206 TILGIILGIDVHFGGLVGAPPSLS--PIFGQLDLSGNLSLAAFAPVIFTFFFVDLFDTLGTLIGVASKAGLLDKNGKMPR 283 (436)
T ss_pred HHHHHHhcccccccccccCCCCcc--chhhHhhhccchhhHHHHHHHHHHHHHHHhcchHHHHHHHHhcCCcCCCCCccc
Confidence 999999874322222223333222 1223455543 2334555566778889999999888888776442 347
Q ss_pred chHHHHHHHHHHHHhhhccccccccchhhhHHhhhcCCccchhhHHHHHHHHHHHHHhHHHHhhchHHHHHHHHHHHhcc
Q 007335 376 GNKEMVAMGFMNIVGSLTSCYVATGSFSRTAVNFSAGCQTVVSNIVMAITVLLSLELFTSLLYYTPIAILASIILSALPG 455 (607)
Q Consensus 376 ~nqEl~a~G~aNi~~s~fg~~p~t~s~srS~v~~~~G~rT~la~iv~a~~~ll~ll~l~~l~~~iP~~vLa~ili~~~~~ 455 (607)
.+|-+.+++++.++|+++|+.|++ ++-+|+.....|+||+++.++.|+++++. +|++|+...+|..+.++.+++++..
T Consensus 284 ~~~al~~D~v~t~~ga~~GtS~~t-~yIESaaGva~GgrTGltavv~g~lFl~~-lf~~Pl~~~vP~~AtapaLi~vG~l 361 (436)
T COG2252 284 IGKALLADSVATVVGALFGTSTVT-AYIESAAGVAAGGRTGLTAVVTGLLFLLS-LFFSPLAALVPGYATAPALIIVGAL 361 (436)
T ss_pred cchHHHHhHHHHHHHHhcCCcchh-hhhhcccccccccccccHHHHHHHHHHHH-HHHHHHHHhCcHhhhhHHHHHHHHH
Confidence 899999999999999999999987 99999999999999999999999999999 6999999999999999999999988
Q ss_pred cCCHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007335 456 LIDINEAINIYKVDKLDFLACIGAFLGVLFASVEIGLLAAVTISFAKILLNA 507 (607)
Q Consensus 456 li~~~~~~~l~k~~~~d~~v~~~tf~~~~~~~~~~Gi~~Gv~~s~~~~~~~~ 507 (607)
|+ ..+.++|+.|+...+.+|++.+++.+.+.+.-|+.++++.+..-.
T Consensus 362 M~-----~~v~~id~~d~~ea~PaF~tiv~mplTySIa~Gia~Gfi~y~i~k 408 (436)
T COG2252 362 ML-----SSVKQIDWSDFTEAVPAFLTIVMMPLTYSIADGIAFGFISYVILK 408 (436)
T ss_pred HH-----hhhccCCchhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 87 467889999999999999999999999999999999888776543
No 8
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=99.94 E-value=7.7e-25 Score=237.01 Aligned_cols=326 Identities=14% Similarity=0.138 Sum_probs=249.1
Q ss_pred HHHHHHhhHHHHHHhhCCCc-------hhhHHHhhhhHHHHHHhcCCC---ccccchh-HHHHHHHHHHHhhhcCCCCCh
Q 007335 106 LASLSIPQSIGYANLAKLDP-------QYGLYTSVIPPLIYALMGSSR---EIAIGPV-AVVSMLLSALMQNVQDPAADP 174 (607)
Q Consensus 106 v~~~~iPq~~aya~laglpp-------~~GLyss~i~~liy~lfGss~---~~~~Gp~-a~~sll~~~~v~~~~~~~~~~ 174 (607)
.+.+.+|.-++-+. +++ +..+..+.++++++++.+..+ ....|+. +.++..+... .+.
T Consensus 20 ~~~i~~p~iv~~~~---l~~~~~~~li~at~~~sgi~Tllq~~~~~~~~~lp~~~G~sfa~i~~~~~~~-~~~------- 88 (415)
T TIGR00801 20 GGTVLVPLLVGLAP---LSAEQTQYLVSISLLTSGIGTLLQLFRTGGQIGLPSYLGSSFAFVSPMIAIG-SGL------- 88 (415)
T ss_pred HHHHHHHHHHhccc---CCHHHHHHHHHHHHHHHHHHHHHHHhhhcCceeeeeeecCcHHHHHHHHHHH-hcc-------
Confidence 45667777776555 444 367889999999999988766 5666776 5555443322 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--hh--hhhhhhccHHHHHHHHHHHHHHHHHHhhhhhhCccccCCCCcHHHHHHHH
Q 007335 175 VAYRKLVFTVTFFAGVFQSVFGLF--RL--GFLVDFLSHAAIVGFMAGAAIVIGLQQLKGLLGISHFTNKTDVVSVLGSV 250 (607)
Q Consensus 175 ~~~~~~a~~~t~l~Gi~~~llG~l--rL--g~l~~flp~~vi~Gf~~gigl~i~~~ql~~~lG~~~~~~~~~~~~~~~~~ 250 (607)
-++.+....+++|+++++++.+ |+ +++.+++|+.|..+++.++|+.++...++++.|....++..+
T Consensus 89 --~~~~~~g~~i~~gl~~~ll~~~~~~~~~~~i~~~~Pp~v~g~iv~~IGl~L~~i~l~~~~g~~~~~~~~~-------- 158 (415)
T TIGR00801 89 --GIPAIMGALIATGLVYTLLSLLIKKLGPRWLMKLFPPVVTGPVVMLIGLSLIPVAVKMAAGGEAAMSSAT-------- 158 (415)
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCchhHHHhHHHHHHHHHHHHHHHhccCCCcccccc--------
Confidence 1578899999999999999985 44 467999999999999999999999999999887653111111
Q ss_pred HhhcCcCCcchhHHHHHHHHHHHHHHHHHhhhccccccccccchhHHHHHHHHHHHHHhhcCCCCeeeeeccc-CCCCCC
Q 007335 251 FSSLHHSYWYPLNFVLGCSFLIFLLIARFIGRRNKKLFWLPAIAPLLSVILSTLIVYLTKADKHGVKIVKHIK-GGLNPS 329 (607)
Q Consensus 251 ~~~l~~~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~ip~~~~Li~iv~~t~i~~~~~~~~~~v~~vg~ip-~gl~~p 329 (607)
- .++.++.+|+.+++++++.+++.|+.- ..++.++++++++++++.++..+. ..+.+.| .++|.+
T Consensus 159 -----~--~~~~~~~vg~~~l~~~vl~~~~~~g~~-----~~~aiLigiv~g~i~a~~lg~~~~--~~v~~~~~~~lP~~ 224 (415)
T TIGR00801 159 -----Y--GSLENLGVAFVVLALIILLNRFGKGFL-----KSISILIGILVGYILALFMGIVDF--SPVIDAPWFSLPTP 224 (415)
T ss_pred -----c--CchhhHHHHHHHHHHHHHHHHHHhhHH-----HHHHHHHHHHHHHHHHHHcCCccc--hhhccCcccccCCc
Confidence 0 345667888888887777665444432 223789999999999998874222 1123333 244544
Q ss_pred CCCcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCcCC----chHHHHHHHHHHHHhhhccccccccchhhh
Q 007335 330 SAHQLQLTGPHLGQTAKIGLISAVVALTEAIAVGRSFASIKGYHLD----GNKEMVAMGFMNIVGSLTSCYVATGSFSRT 405 (607)
Q Consensus 330 ~lp~~~~~~~~~~~~~~~~~~~aiv~~~e~i~~~~~~a~~~~~~~d----~nqEl~a~G~aNi~~s~fg~~p~t~s~srS 405 (607)
..|..+|+.. .+...+.++++.+.|+++..++.+++.|++.| .|||+.++|++|+++|+||++|.+++..++
T Consensus 225 ~~~g~~f~~~----~~~~~~~i~lv~~~es~g~~~a~a~~~g~~~~~~~~~~r~l~adGl~~i~aglfG~~p~t~~sen~ 300 (415)
T TIGR00801 225 FTFGPSFEWP----AILTMLPVAIVSLVESIGDITATADVSGRDLSGDPRLHRGVLADGLATLLAGLFGGFPNTTFAQNI 300 (415)
T ss_pred cCCCceecHH----HHHHHHHHHHHHHHHhhhHHHHHHHHhCCCCCCCccccchHHHhhHHHHHHHhcCCCCCcchhhhh
Confidence 4332234433 34444668889999999999999999998764 479999999999999999999999999999
Q ss_pred HHhhhcCCccchhhHHHHHHHHHHHHH--hHHHHhhchHHHHHHHHHHHhcccCCHHHHHHHhccCcc
Q 007335 406 AVNFSAGCQTVVSNIVMAITVLLSLEL--FTSLLYYTPIAILASIILSALPGLIDINEAINIYKVDKL 471 (607)
Q Consensus 406 ~v~~~~G~rT~la~iv~a~~~ll~ll~--l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l~k~~~~ 471 (607)
+++..+|++||.+..++|+++++..++ ++++++++|.++++++++ +.++++....++.+++.+..
T Consensus 301 g~~~~T~~~sr~~~~~~a~~~i~~~l~pk~~~l~~~iP~~vlgg~~l-~~~~~i~~~gi~~l~~~~~~ 367 (415)
T TIGR00801 301 GVIALTRVASRWVIVGAAVILIALGFFPKIAALITSIPSPVLGGASI-VMFGMIAASGIRILIRNKLD 367 (415)
T ss_pred eeeeecCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHHHhCccC
Confidence 999999999999999999999999999 999999999999999999 68899988999988876543
No 9
>PRK10720 uracil transporter; Provisional
Probab=99.94 E-value=1.2e-24 Score=235.78 Aligned_cols=355 Identities=14% Similarity=0.148 Sum_probs=253.8
Q ss_pred HHHHHhhHHHHHHhhCCCchhhHHHhhhhHHHHHHhcC-CCccccchh-HHHHHHHHHHHhhhcCCCCChHHHHHHHHHH
Q 007335 107 ASLSIPQSIGYANLAKLDPQYGLYTSVIPPLIYALMGS-SREIAIGPV-AVVSMLLSALMQNVQDPAADPVAYRKLVFTV 184 (607)
Q Consensus 107 ~~~~iPq~~aya~laglpp~~GLyss~i~~liy~lfGs-s~~~~~Gp~-a~~sll~~~~v~~~~~~~~~~~~~~~~a~~~ 184 (607)
+.+.+|.-+ |+++...++.|.++++++.+++. .-++..||. +.++.+.... .. -++.+..+
T Consensus 30 ~~i~~Pli~------gl~~~~~l~~sGi~TliQ~~~~g~rlP~~~G~sfa~i~~~~~~~--~~---------~~~~~lga 92 (428)
T PRK10720 30 ATVLVPILF------HINPATVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLLLL--PL---------GYEVALGG 92 (428)
T ss_pred HHHHHHhhc------CCCHHHHHHHHHHHHHHHHHhccCccceEEeCcHHHHHHHHHHH--Hc---------cHHHHHHH
Confidence 555666633 88999999999999999998875 446666885 3333333211 11 16788999
Q ss_pred HHHHHHHHHHHHHh--hh--hhhhhhccHHHHHHHHHHHHHHHHHHhhhhhhCccccCCCCcHHHHHHHHHhhcCcCCcc
Q 007335 185 TFFAGVFQSVFGLF--RL--GFLVDFLSHAAIVGFMAGAAIVIGLQQLKGLLGISHFTNKTDVVSVLGSVFSSLHHSYWY 260 (607)
Q Consensus 185 t~l~Gi~~~llG~l--rL--g~l~~flp~~vi~Gf~~gigl~i~~~ql~~~lG~~~~~~~~~~~~~~~~~~~~l~~~~~~ 260 (607)
.+++|+++++++++ |+ +++.+++|+.+++.+++.+|+.+.-..++. .|... ...+ . .+
T Consensus 93 v~v~Glv~ills~~~~~~g~~~l~~~fPp~v~G~~i~lIGl~L~~~~~~~-~g~~~--~~~~-------------~--~~ 154 (428)
T PRK10720 93 FIMCGVLFCLVALIVKKAGTGWLDVLFPPAAMGAIVAVIGLELAGVAAGM-AGLLP--AEGQ-------------T--PD 154 (428)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhCChHHHHHHHHHHHHHhHHHHHhh-ccccC--CCCc-------------c--cc
Confidence 99999999999997 34 468999999999999999999998666653 23211 0011 1 45
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhccccccccccchhHHHHHHHHHHHHHhhcCCCCeeeeecc-cCCCCCCCCCcCCCChh
Q 007335 261 PLNFVLGCSFLIFLLIARFIGRRNKKLFWLPAIAPLLSVILSTLIVYLTKADKHGVKIVKHI-KGGLNPSSAHQLQLTGP 339 (607)
Q Consensus 261 ~~~~~ig~~~l~~ll~~~~~~~~~~~~~~ip~~~~Li~iv~~t~i~~~~~~~~~~v~~vg~i-p~gl~~p~lp~~~~~~~ 339 (607)
+.++.+++++++++++.....|++.|. .+.++++++++++++.++.. +++.+++. +.++|.+..|++++ .
T Consensus 155 ~~~~~lalv~l~iil~~~~~~kg~~~~-----~~iLigIvvG~ila~~lG~~--d~~~v~~a~~~~lP~~~~P~fd~--~ 225 (428)
T PRK10720 155 SKTIIISMVTLAVTVLGSVLFRGFLAI-----IPILIGVLVGYALSFAMGMV--DTTPIIEAHWFALPTFYTPRFEW--F 225 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccHHHH-----hHHHHHHHHHHHHHHHhcCC--CHHHhhcCccccCCCCCCCcCcH--H
Confidence 667788888888777655444544332 25699999999999988752 23333422 34566666665543 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCc----CCchHHHHHHHHHHHHhhhccccccccchhhhHHhhhcCCcc
Q 007335 340 HLGQTAKIGLISAVVALTEAIAVGRSFASIKGYH----LDGNKEMVAMGFMNIVGSLTSCYVATGSFSRTAVNFSAGCQT 415 (607)
Q Consensus 340 ~~~~~~~~~~~~aiv~~~e~i~~~~~~a~~~~~~----~d~nqEl~a~G~aNi~~s~fg~~p~t~s~srS~v~~~~G~rT 415 (607)
.+...+ ..+++.+.|+++...+.++..+++ .|.|||+.++|++|+++|+||++|++++..+..+...+|.++
T Consensus 226 ~il~l~----~~~lv~~~EsiG~~~a~~~~~~~~~~~~~~~~r~l~adGlatii~glfG~~p~tty~en~g~ia~T~v~s 301 (428)
T PRK10720 226 AILTIL----PAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYGENIGVMAITRVYS 301 (428)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHhhCCCCCCCccccchHhhhhHHHHHHHhcCCCCccccccccceeeecccch
Confidence 333333 344566678887777666655543 477999999999999999999999998777777777788888
Q ss_pred chhhHHHHHHHHHHHHH--hHHHHhhchHHHHHHHHHHHhcccCCHHHHHHHhccCccch------hHH-----------
Q 007335 416 VVSNIVMAITVLLSLEL--FTSLLYYTPIAILASIILSALPGLIDINEAINIYKVDKLDF------LAC----------- 476 (607)
Q Consensus 416 ~la~iv~a~~~ll~ll~--l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l~k~~~~d~------~v~----------- 476 (607)
|....++++++++..++ ++++++.+|.+|+||+.+ +.+++++..+++.+|+ ++.|+ .+.
T Consensus 302 r~v~~~a~~~li~lg~~pk~~a~ia~iP~pVlgg~~i-~~fg~i~~~Gi~~l~~-~~~~~~~~~n~~i~~~~l~~g~~~~ 379 (428)
T PRK10720 302 TWVIGGAAIIAILLSCVGKLAAAIQAIPLPVMGGVSL-LLYGVIGASGIRVLIE-SKVDYNKAQNLILTSVILIIGVSGA 379 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHHHH-ccCCCCcccchhHHHHHHHHHHHHH
Confidence 88887787777777754 899999999999999999 6999999999999965 33332 221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 007335 477 IGAFLGVLFASVEIGLLAAVTISFAKILLNAVRPG 511 (607)
Q Consensus 477 ~~tf~~~~~~~~~~Gi~~Gv~~s~~~~~~~~~rp~ 511 (607)
..++......|+..|.++|++++++...+|.-|++
T Consensus 380 ~~~~~~~~~~gi~~g~~~ai~Lnlll~~~~~~~~~ 414 (428)
T PRK10720 380 KVNIGAAELKGMALATIVGIGLSLIFKLISKLRPE 414 (428)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHhcccccccCC
Confidence 11222333358888999999999998887776665
No 10
>PF13792 Sulfate_tra_GLY: Sulfate transporter N-terminal domain with GLY motif
Probab=99.92 E-value=8.7e-26 Score=187.24 Aligned_cols=83 Identities=52% Similarity=0.981 Sum_probs=80.8
Q ss_pred cccccccccCCh-hhhhhhHHHHHHHHHHHHhhHHHHHHhhCCCchhhHHHhhhhHHHHHHhcCCCccccchhHHHHHHH
Q 007335 82 FPILNWGRNYKA-SKFKSDLMAGLTLASLSIPQSIGYANLAKLDPQYGLYTSVIPPLIYALMGSSREIAIGPVAVVSMLL 160 (607)
Q Consensus 82 ~Pi~~wl~~y~~-~~l~~D~~aGltv~~~~iPq~~aya~laglpp~~GLyss~i~~liy~lfGss~~~~~Gp~a~~sll~ 160 (607)
||+++|+++|++ +++++|++||+|++++++||+||||.+||+||++|||++++++++|++||+||++++||++.+++++
T Consensus 1 ~P~l~wl~~y~~k~~~~~D~~aGltva~~~iPq~~a~A~lAg~pp~~GLy~a~~~~liyalfG~s~~~~~Gp~a~~s~l~ 80 (84)
T PF13792_consen 1 FPILQWLPRYSWKSNLRGDLLAGLTVALVAIPQGMAYALLAGVPPIYGLYAAIIPPLIYALFGSSRHMIVGPTAAMSLLI 80 (84)
T ss_pred CCchhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeeeHHHHHHHHHHhhccCCCccccChHHHHHHHH
Confidence 799999999997 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 007335 161 SALM 164 (607)
Q Consensus 161 ~~~v 164 (607)
++++
T Consensus 81 ~~~v 84 (84)
T PF13792_consen 81 ASVV 84 (84)
T ss_pred HHhC
Confidence 8764
No 11
>TIGR03616 RutG pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).
Probab=99.90 E-value=1.3e-20 Score=204.12 Aligned_cols=328 Identities=14% Similarity=0.141 Sum_probs=222.4
Q ss_pred hhhHHHHHHHHHHHHhhHHHHHHhhCCCchhhHHHhhhhHHHHH-HhcCCCccccchhHHHHHHHHHHHhhhcCCCCChH
Q 007335 97 KSDLMAGLTLASLSIPQSIGYANLAKLDPQYGLYTSVIPPLIYA-LMGSSREIAIGPVAVVSMLLSALMQNVQDPAADPV 175 (607)
Q Consensus 97 ~~D~~aGltv~~~~iPq~~aya~laglpp~~GLyss~i~~liy~-lfGss~~~~~Gp~a~~sll~~~~v~~~~~~~~~~~ 175 (607)
...++.|+.-.+...--.++...+-|+++...+++|.++++++. .+|+...+..|+.......+.... ... ..+++
T Consensus 30 ~~~~~~GlQh~lam~~~~v~~Plilgl~~~~tl~~sGi~TllQ~~~~G~rlP~v~G~sf~f~~~~~~~~-~~~--~~~~~ 106 (429)
T TIGR03616 30 AQTIVMGLQHAVAMFGATVLMPLLMGFDPNLTILMSGIGTLLFFLITGGRVPSYLGSSAAFVGAVIAAT-GYN--GQGTN 106 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHhCCCceeEEcCcHHHHHHHHHHH-hhc--ccCCc
Confidence 45788888766643333333334447999999999999999997 588888888899755433222221 111 11223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh----hhhhhhccHHHHHHHHHHHHHHHHHHhhhhhhCccccCCCCcHHHHHHHHH
Q 007335 176 AYRKLVFTVTFFAGVFQSVFGLFRL----GFLVDFLSHAAIVGFMAGAAIVIGLQQLKGLLGISHFTNKTDVVSVLGSVF 251 (607)
Q Consensus 176 ~~~~~a~~~t~l~Gi~~~llG~lrL----g~l~~flp~~vi~Gf~~gigl~i~~~ql~~~lG~~~~~~~~~~~~~~~~~~ 251 (607)
.+++.+..+++++|++++++|++++ +++.+++|+.|.+-.+..+|+.++...++...| .+
T Consensus 107 ~~~~~a~ga~iv~G~i~~llg~~~~~~~~~~l~r~fpPvV~G~vv~lIGlsL~~vg~~~~~~-------~~--------- 170 (429)
T TIGR03616 107 PNIALALGGIIACGLVYAAIGLVVMRTGTRWIERLMPPVVTGAVVMAIGLNLAPIAVKSVSA-------SG--------- 170 (429)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHhccc-------cc---------
Confidence 4577889999999999999999876 568888999999888988888888655554221 01
Q ss_pred hhcCcCCcchhHHHHHHHHHHHHHHHHHhhhccccccccccchhHHHHHHHHHHHHHh----hcC-CCCeeee-ecccCC
Q 007335 252 SSLHHSYWYPLNFVLGCSFLIFLLIARFIGRRNKKLFWLPAIAPLLSVILSTLIVYLT----KAD-KHGVKIV-KHIKGG 325 (607)
Q Consensus 252 ~~l~~~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~ip~~~~Li~iv~~t~i~~~~----~~~-~~~v~~v-g~ip~g 325 (607)
. .+|. ++++++.++....+.|+.-|. .+.++++++++++++.. +.. ..+.+.+ +.-+.+
T Consensus 171 --~----~~~~----al~tl~~i~l~~l~~~~~l~~-----~avLiGivvG~iva~~l~~~~g~~~~vd~s~v~~a~~~~ 235 (429)
T TIGR03616 171 --F----DSWM----AVLTILCIGAVAVFTRGMLQR-----LLILVGLIAAYLAYFILTNVFGLGKAVDFSPISQAAWFG 235 (429)
T ss_pred --c----ccHH----HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhhcCCCccccCcccccCcccc
Confidence 0 1222 222222222222333433222 16799999999988764 211 1333333 333345
Q ss_pred CCCCCCCcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCcCCc--hHHHHHHHHHHHHhhhccccccccchh
Q 007335 326 LNPSSAHQLQLTGPHLGQTAKIGLISAVVALTEAIAVGRSFASIKGYHLDG--NKEMVAMGFMNIVGSLTSCYVATGSFS 403 (607)
Q Consensus 326 l~~p~lp~~~~~~~~~~~~~~~~~~~aiv~~~e~i~~~~~~a~~~~~~~d~--nqEl~a~G~aNi~~s~fg~~p~t~s~s 403 (607)
+|++..|++|+ . .+...+..+++.++|+++..++.++..+++.|+ |||+.++|++|+++|+||+.|.+.+..
T Consensus 236 lP~~~~p~f~~--~----~il~~~~~~lv~~~esiG~~~a~~~~~~~~~~~~i~r~l~adGl~t~~agl~g~~p~tt~~e 309 (429)
T TIGR03616 236 LPNFHTPVFNA--N----AMLLIAPVALILVAENLGHFKAVAGMTGRNLDPYMGRAFVGDGLATMLSGSVGGTGVTTYAE 309 (429)
T ss_pred CCcCCCceEcH--H----HHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCchhccchhhhhHHHHHHHhcCCCCCcceee
Confidence 67666665543 2 233334567788999999999999888877776 799999999999999999999887766
Q ss_pred hhHHhhhcCCccchhhHHHHHHHHHHHHH--hHHHHhhchHHHHHHHHHHHhcccCCHHHHHHH
Q 007335 404 RTAVNFSAGCQTVVSNIVMAITVLLSLEL--FTSLLYYTPIAILASIILSALPGLIDINEAINI 465 (607)
Q Consensus 404 rS~v~~~~G~rT~la~iv~a~~~ll~ll~--l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l 465 (607)
+..+...+|..+|......++++++..++ ++.+++.+|.+|+||+++ +.++++...+++.+
T Consensus 310 n~g~i~~T~v~SR~v~~~a~~~lillgl~Pk~~al~~~IP~pVlgG~~i-~~fg~i~~~Gi~~l 372 (429)
T TIGR03616 310 NIGVMAVTKVYSTLVFVAAAVFAILLGFSPKFGALIHTIPVAVLGGASI-VVFGLIAVAGARIW 372 (429)
T ss_pred eeeeeeecCcchHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 66666667777777666666655554433 344999999999999998 68999988888733
No 12
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=99.83 E-value=4.7e-18 Score=183.04 Aligned_cols=343 Identities=17% Similarity=0.119 Sum_probs=206.8
Q ss_pred hhHHHHHHHHHHHHhhHHHHHHhh----CC--C----chhhHHHhhhhHHHHHH-hcCCCccccchhHHHHHHHHHHHhh
Q 007335 98 SDLMAGLTLASLSIPQSIGYANLA----KL--D----PQYGLYTSVIPPLIYAL-MGSSREIAIGPVAVVSMLLSALMQN 166 (607)
Q Consensus 98 ~D~~aGltv~~~~iPq~~aya~la----gl--p----p~~GLyss~i~~liy~l-fGss~~~~~Gp~a~~sll~~~~v~~ 166 (607)
+++++|++..+...+--+....+. |+ + .+..+..+.++++++++ +|....+..||....-. ....+..
T Consensus 2 ~~i~~glQ~~l~m~~~~iv~P~il~~~~g~~~~~~~li~at~l~sgi~Tllq~~~~g~~lpl~~G~s~~~~~-~~~~~~g 80 (389)
T PF00860_consen 2 KEILLGLQHFLAMFYIIIVVPLILAAAFGLDADTAALISATFLVSGIATLLQGLPAGHRLPLVPGPSFAFIF-AFMIVIG 80 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTS-----------HHHHHHHHHHHHHHHHHHTTT-----EEE-GGGHH-HHHGGG-
T ss_pred ccHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcCCCceecccccchhhhh-hhhcccc
Confidence 578888887764433333333322 22 1 24678889999999999 88877888888543211 1112211
Q ss_pred hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhhccHHHHHHHHHHHHHHHHHHhhhhhhCccccCCCCcHHH
Q 007335 167 VQDPAADPVAYRKLVFTVTFFAGVFQSVFGLFRLG-FLVDFLSHAAIVGFMAGAAIVIGLQQLKGLLGISHFTNKTDVVS 245 (607)
Q Consensus 167 ~~~~~~~~~~~~~~a~~~t~l~Gi~~~llG~lrLg-~l~~flp~~vi~Gf~~gigl~i~~~ql~~~lG~~~~~~~~~~~~ 245 (607)
.. .+....++.+..+.+++|+++++++++++. ++.+++|+.|..++..++|+.+....++...|.........
T Consensus 81 ~~---~~~~~~~~~~~g~~~i~gi~~~~l~~~g~~~~l~~~~pp~v~g~v~~~IGl~L~~~~~~~~~~~~~~~~~~~--- 154 (389)
T PF00860_consen 81 MA---ESGGYGLQAALGAVLISGILFILLGLTGLRKRLRRLFPPVVKGAVVLLIGLSLAPIGLKNAGGIWGNPDGLL--- 154 (389)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHTT-SH-HHHHH--HHHHHHHHHHHHHHHHHHHHHHTTSS---BTT-B---
T ss_pred cc---cchhhchhhhhhHHHHHHHHHHHHHHhchHHHHHHHhChhheEeeEeeehhhhhhhHhhccccccccccccc---
Confidence 10 123345788999999999999999999985 89999999999999999999999999998888752111000
Q ss_pred HHHHHHhhcCcCCcchhHHHHHHHHHHHHHHHHHhhhccccccccccchhHHHHHHHHHHHHHhhcCCCCeee-eeccc-
Q 007335 246 VLGSVFSSLHHSYWYPLNFVLGCSFLIFLLIARFIGRRNKKLFWLPAIAPLLSVILSTLIVYLTKADKHGVKI-VKHIK- 323 (607)
Q Consensus 246 ~~~~~~~~l~~~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~ip~~~~Li~iv~~t~i~~~~~~~~~~v~~-vg~ip- 323 (607)
. .++....+++..+++.+......+++.+. .+.++++++++++++..+..+ .+- +.+-|
T Consensus 155 ----------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ailigi~~g~i~~~~~g~~~--~~~~~~~~~~ 215 (389)
T PF00860_consen 155 ----------V--GDGKNLGLAVLTLLFILLLSLFLKGFLRK-----GAILIGIIAGWIVAAILGVVD--FSPSVSSAPW 215 (389)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHSSSTTTTT-----HHHHHHHHHHHHHHHHHHHTT--SSH-HHHS-S
T ss_pred ----------c--ccccccccccccchhhhhhhhhhhhhccc-----ccchhhhhhhhhhhhcccccc--cCcccccccc
Confidence 1 33444455555555555554443333322 267899999999999887321 111 11111
Q ss_pred CCCCCCCCCcCCCChh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCc----CCchHHHHHHHHHHHHhhhcccccc
Q 007335 324 GGLNPSSAHQLQLTGP-HLGQTAKIGLISAVVALTEAIAVGRSFASIKGYH----LDGNKEMVAMGFMNIVGSLTSCYVA 398 (607)
Q Consensus 324 ~gl~~p~lp~~~~~~~-~~~~~~~~~~~~aiv~~~e~i~~~~~~a~~~~~~----~d~nqEl~a~G~aNi~~s~fg~~p~ 398 (607)
.++|.+ ++|..+ .....+...+...++...|+++.-.+.++..|.+ .+.||-+.++|++|+++++||+.|.
T Consensus 216 ~~~p~~----~~~g~p~f~~~~i~~~~~~~lv~~~es~G~~~a~~~~~~~~~~~~~~~~r~l~~dg~~~~l~gl~G~~~~ 291 (389)
T PF00860_consen 216 FSLPSP----FPFGWPSFDPGAILTFLIFALVAMFESIGTIVAVARIAGKDDPRPPRIRRGLLADGLGTILAGLFGTSPT 291 (389)
T ss_dssp S------------------HHHHHHHTHHHHHHHHHHHHHHHHHHHHHTS-TCCCCCHHHHHHHHHHHHHHHHHHT---E
T ss_pred cccccc----cccccccccHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCCccchhhcccceeeeeeeeechhhcCCCC
Confidence 112211 111111 1224455556677788888888777776665544 4579999999999999999999999
Q ss_pred ccchhhhHHhhhcCCccchhhHHHHHHHHHHHHH--hHHHHhhchHHHHHHHHHHHhcccCCHHHHHHHhccCcc
Q 007335 399 TGSFSRTAVNFSAGCQTVVSNIVMAITVLLSLEL--FTSLLYYTPIAILASIILSALPGLIDINEAINIYKVDKL 471 (607)
Q Consensus 399 t~s~srS~v~~~~G~rT~la~iv~a~~~ll~ll~--l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l~k~~~~ 471 (607)
+.+..+.+.-..+|+++|.+++.++++.++..++ ++|++..+|.+++++..++ .++++-..+++.+...+..
T Consensus 292 t~~~en~g~i~~t~v~Sr~~~~~a~~~~i~~~~~p~~~~l~~~IP~~v~gg~~lv-~~g~i~~~gi~~i~~~~~~ 365 (389)
T PF00860_consen 292 TTYSENAGGIAATGVASRRVGLTAGVILILFGLSPKFAPLFASIPSPVIGGPLLV-LFGMIMMSGIRNIDWVDLD 365 (389)
T ss_dssp EE-HHHHHHHHHHTB--HHHHHHHHHHHHHHT--HHHHHHHTTS-HHHHHHHHHH-HHHHHHHHHHHHHHHTTS-
T ss_pred ccccccchhhhhhccccceeeeHHHHHHHHHhhHHHHHHHHHHHHHHHhccchHH-HHHHHHHHHhHhheecccC
Confidence 8777777777778899999999998888877765 8999999999998887665 2333333445554444443
No 13
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=99.82 E-value=1.6e-17 Score=179.11 Aligned_cols=335 Identities=14% Similarity=0.121 Sum_probs=234.8
Q ss_pred HHHHHHhhHHHHHHhhCCCch-------hhHHHhhhhHHHHHHhcCCCccccchhHHH-HHHHHHHHhhhcCCCCChHHH
Q 007335 106 LASLSIPQSIGYANLAKLDPQ-------YGLYTSVIPPLIYALMGSSREIAIGPVAVV-SMLLSALMQNVQDPAADPVAY 177 (607)
Q Consensus 106 v~~~~iPq~~aya~laglpp~-------~GLyss~i~~liy~lfGss~~~~~Gp~a~~-sll~~~~v~~~~~~~~~~~~~ 177 (607)
.+.+.+|.-++=+ .|+++. ..++.|.+.+++-+.+|+...+..||.... ..+..-...... .+....+.
T Consensus 23 ~~~i~vPliva~a--~gl~~~~~~~li~~~l~~sGIaTllQ~~~G~rlPiv~G~Sf~~~~~~~~i~~~~~~-~g~~~~~~ 99 (433)
T PRK11412 23 CNTVVVPPTLLSA--FQLPQSSLLTLTQYAFLATALACFAQAFCGHRRAIMEGPGGLWWGTILTITLGEAS-RGTPINDI 99 (433)
T ss_pred HHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeeCCchHHHHHHHHHHhcccc-cCccHHHH
Confidence 4566777766544 578774 668889999999999999999999997543 322222111100 00001122
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-hhhhhhhccHHHHHHHHHHHHHHHHHHhhhhhhCccccCCCCcHHHHHHHHHhhcCc
Q 007335 178 RKLVFTVTFFAGVFQSVFGLFR-LGFLVDFLSHAAIVGFMAGAAIVIGLQQLKGLLGISHFTNKTDVVSVLGSVFSSLHH 256 (607)
Q Consensus 178 ~~~a~~~t~l~Gi~~~llG~lr-Lg~l~~flp~~vi~Gf~~gigl~i~~~ql~~~lG~~~~~~~~~~~~~~~~~~~~l~~ 256 (607)
.+......+++|++++++|..+ ++++.+++|+-|.+-++.-+|+.++...++++.|.+. ....++ .+
T Consensus 100 ~g~l~g~~i~~g~~~~~lg~~~~~~~l~r~fpPvV~G~vv~lIGlsL~~~a~~~~~G~~~-~~~~~~-----------~~ 167 (433)
T PRK11412 100 ATSLAVGIALSGVVTILIGFSGLGHRLARLFTPMVMVVFMLLLGAQLTTIFFKGMLGLPF-GIADPN-----------GK 167 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhHhHHHHHHhhHHHHHHHhcCCCc-cCcccc-----------cc
Confidence 2333446899999999999998 6999999999999999999999999999999888621 001110 11
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHhhhccccccccccchhHHHHHHHHHHHH-HhhcCCCCeeeeeccc-CCCCCCCCCcC
Q 007335 257 SYWYPLNFVLGCSFLIFLLIARFIGRRNKKLFWLPAIAPLLSVILSTLIVY-LTKADKHGVKIVKHIK-GGLNPSSAHQL 334 (607)
Q Consensus 257 ~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~ip~~~~Li~iv~~t~i~~-~~~~~~~~v~~vg~ip-~gl~~p~lp~~ 334 (607)
+++..+.+++.++++++....+.|++-|. .+.+++++++++++. .++.+ ...+++.+ ..+| +..|.
T Consensus 168 --~~~~~~~~a~~~l~~il~~~~~~~g~~~~-----~svLiGiv~G~v~a~~~~g~d---~~~v~~a~w~~~p-fG~P~- 235 (433)
T PRK11412 168 --IQLPPFGLSVAVMCLVLAMIIFLPQRIAR-----YSLLVGTIVGWILWAFCFPSS---HSLSGELHWQWFP-LGSGG- 235 (433)
T ss_pred --cchHHHHHHHHHHHHHHHHHHHhhhHHHH-----HHHHHHHHHHHHHHHHHhCCC---cchhccCCceeec-CCCCC-
Confidence 33455667777777766666555554332 277899999999754 44432 22223322 2232 33442
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCcC----CchHHHHHHHHHHHHhhhccccccccchhhhHHhhh
Q 007335 335 QLTGPHLGQTAKIGLISAVVALTEAIAVGRSFASIKGYHL----DGNKEMVAMGFMNIVGSLTSCYVATGSFSRTAVNFS 410 (607)
Q Consensus 335 ~~~~~~~~~~~~~~~~~aiv~~~e~i~~~~~~a~~~~~~~----d~nqEl~a~G~aNi~~s~fg~~p~t~s~srS~v~~~ 410 (607)
+|++. ++...+..+++...|+++.-++.++..+.+. +.+|-+.++|++|+++++||+.|.+....+..+-..
T Consensus 236 ~F~~~----~il~~~~~~lv~~~e~iG~~~a~~~~~~~~~~~~~~l~rgi~~dGi~s~laglfg~~p~tt~sqNvGvi~~ 311 (433)
T PRK11412 236 ALEPG----IILTAVITGLVNISNTYGAIRGTDVFYPQQGAGNTRYRRSFVATGFMTLITVPLAVIPFSPFVSSIGLLTQ 311 (433)
T ss_pred ccCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccchhhccHHHHHHHhcCCCCCCchhhhhhhhhh
Confidence 23332 2334445667777888777777766665543 558899999999999999999999988888889999
Q ss_pred cCCccchhhHHHHHHHHHHHHH--hHHHHhhchHHHHHHHHHHHhcccCCHHHHHHHhccCccc
Q 007335 411 AGCQTVVSNIVMAITVLLSLEL--FTSLLYYTPIAILASIILSALPGLIDINEAINIYKVDKLD 472 (607)
Q Consensus 411 ~G~rT~la~iv~a~~~ll~ll~--l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l~k~~~~d 472 (607)
+|.++|....+.|+++++..++ ++.++..+|.+|++|+.++ .++++-...++.+.|.+..+
T Consensus 312 TgV~SR~v~~~aa~ilillgl~PK~~alia~IP~pVlGg~~~~-~Fg~I~~~Gi~~l~~~~~~~ 374 (433)
T PRK11412 312 TGDYRRRSFIYGSVMCLLVALIPALTRLFCSIPLPVSSAVMLV-SYLPLLGSALVFSQQITFTA 374 (433)
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH-HHHHHHHHHHHHHHhCCCCc
Confidence 9999999999999999998877 7889999999999999887 77777667777776665433
No 14
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=99.81 E-value=1.9e-18 Score=183.82 Aligned_cols=308 Identities=16% Similarity=0.114 Sum_probs=227.3
Q ss_pred hhHHHhhhhHHHHHH----hcCCCccccchh-HHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007335 127 YGLYTSVIPPLIYAL----MGSSREIAIGPV-AVVSMLLSALMQNVQDPAADPVAYRKLVFTVTFFAGVFQSVFGLFRLG 201 (607)
Q Consensus 127 ~GLyss~i~~liy~l----fGss~~~~~Gp~-a~~sll~~~~v~~~~~~~~~~~~~~~~a~~~t~l~Gi~~~llG~lrLg 201 (607)
+.|++|.++++++.+ +|+.-....|.. +.++.+.. +.++.+ ...+.+....+.+|++.++++.+--.
T Consensus 57 ~~l~~~GiaTllq~~~~~~~g~~lP~~lG~sFafi~p~i~-~~~~~g-------~~~~~~~G~ii~ag~~~~li~~~~~~ 128 (451)
T COG2233 57 ADLLASGIGTLLQLLGTGPGGSGLPSYLGSSFAFVAPMIA-IGGTTG-------DGIAALLGGIIAAGLVYFLISPIVKI 128 (451)
T ss_pred HHHHHHHHHHHHHHhhccCcccCCCeeEechHHHHHHHHH-HHhccC-------CchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 559999999999998 444445555664 44444433 222221 11467788999999999999987322
Q ss_pred hhhhhccHHHHHHHHHHHHHHHHHHhhhhhhCccccCCCCcHHHHHHHHHhhcCcCCcchhHHHHHHHHHHHHHHHHHhh
Q 007335 202 FLVDFLSHAAIVGFMAGAAIVIGLQQLKGLLGISHFTNKTDVVSVLGSVFSSLHHSYWYPLNFVLGCSFLIFLLIARFIG 281 (607)
Q Consensus 202 ~l~~flp~~vi~Gf~~gigl~i~~~ql~~~lG~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ig~~~l~~ll~~~~~~ 281 (607)
|+.|++|+-|.+-++.-+|+.++...++.+.|.....++.++ .+...+.+++.++++.++...+.
T Consensus 129 ~l~rlfPPvVtG~Vi~~IGlsL~~vai~~~~G~~~~~~~~~~---------------~~~~~l~la~~tl~~il~~~~f~ 193 (451)
T COG2233 129 RLARLFPPVVTGPVVLVIGLSLAPVAINMAGGGPGAAGNPDF---------------GSLENLGLALVTLLIILLINRFG 193 (451)
T ss_pred HHHHhCCCceEEeEeeeehhhhHHHHHHHhhCCCCCCCCccc---------------CchhHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999987632222222 45667788888888877776655
Q ss_pred hccccccccccchhHHHHHHHHHHHHHhhcCCCCeeeeeccc-CCCCCCCCCcCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 007335 282 RRNKKLFWLPAIAPLLSVILSTLIVYLTKADKHGVKIVKHIK-GGLNPSSAHQLQLTGPHLGQTAKIGLISAVVALTEAI 360 (607)
Q Consensus 282 ~~~~~~~~ip~~~~Li~iv~~t~i~~~~~~~~~~v~~vg~ip-~gl~~p~lp~~~~~~~~~~~~~~~~~~~aiv~~~e~i 360 (607)
|.+-|. .+.++++++|+++++..+.- +.+.+.+-| -.+|.|..+...|++. ++...+.++++.+.|++
T Consensus 194 ~g~~~~-----i~ILiGlv~G~~la~~~G~v--df~~v~~a~w~~~P~~~~fg~~F~~~----ail~m~~v~iV~~~E~~ 262 (451)
T COG2233 194 KGFLRR-----IPILIGLVVGYLLALFMGMV--DFSGVAEAPWFALPTPFYFGMAFDWG----AILTMLPVAIVTIVEHT 262 (451)
T ss_pred hhHHHH-----HHHHHHHHHHHHHHHHhCCc--CccccccCceeeCCcccCCCeeecHH----HHHHHHHHHHHHHHHHh
Confidence 554332 26689999999999998731 222233332 2455554443345543 33344456678888888
Q ss_pred HHHHHHhhhhCCcCC----chHHHHHHHHHHHHhhhccccccccchhhhHHhhhcCCccchhhHHHHHHHHHHHHH--hH
Q 007335 361 AVGRSFASIKGYHLD----GNKEMVAMGFMNIVGSLTSCYVATGSFSRTAVNFSAGCQTVVSNIVMAITVLLSLEL--FT 434 (607)
Q Consensus 361 ~~~~~~a~~~~~~~d----~nqEl~a~G~aNi~~s~fg~~p~t~s~srS~v~~~~G~rT~la~iv~a~~~ll~ll~--l~ 434 (607)
+.-++.++..|++.| .+|.++++|++++++++||++|.|..-.+..+-..+|.+||......|++.++..++ ++
T Consensus 263 G~i~A~~~itg~~~~~~~~l~rg~~aDGlat~iag~fg~~p~TtfaqNiGvv~lT~v~Sr~V~~~aavili~lgl~pk~~ 342 (451)
T COG2233 263 GDITATGEITGRDLDGKPRLRRGLLADGLATLIAGLFGGFPNTTFAQNIGVVALTGVYSRYVIAGAAVILILLGLFPKFG 342 (451)
T ss_pred hhhhhHHhHhCCcCccCcccccceeeccHHHHHHHhcCCCCCCchhhceeeeeeccCChhHHHHHHHHHHHHHHhhHHHH
Confidence 777777776666555 467889999999999999999999888888999999999999999999998888876 88
Q ss_pred HHHhhchHHHHHHHHHHHhcccCCHHHHHHHhccC
Q 007335 435 SLLYYTPIAILASIILSALPGLIDINEAINIYKVD 469 (607)
Q Consensus 435 ~l~~~iP~~vLa~ili~~~~~li~~~~~~~l~k~~ 469 (607)
.+++.||.+|++|+.++ .++++....++.+-|.+
T Consensus 343 al~~sIP~pVlGGa~iv-mFG~Ia~sGir~l~~~~ 376 (451)
T COG2233 343 ALIQSIPSPVLGGAMLV-LFGMIAASGIRILIRNK 376 (451)
T ss_pred HHHHhCChhhhhHHHHH-HHHHHHHHHHHHHHhcc
Confidence 89999999999999877 88888777776666543
No 15
>TIGR00834 ae anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule.
Probab=99.62 E-value=1.3e-12 Score=149.69 Aligned_cols=369 Identities=13% Similarity=0.128 Sum_probs=244.5
Q ss_pred HHHhhhcccc--cccccccCChhhhhhhHHHHHHHHHHHHhhHHHHHHhhC------CCchhhHHHhhhhHHHHHHhcCC
Q 007335 74 AFSFLRGLFP--ILNWGRNYKASKFKSDLMAGLTLASLSIPQSIGYANLAK------LDPQYGLYTSVIPPLIYALMGSS 145 (607)
Q Consensus 74 ~~~~~~~~~P--i~~wl~~y~~~~l~~D~~aGltv~~~~iPq~~aya~lag------lpp~~GLyss~i~~liy~lfGss 145 (607)
..+-++++.| ..+|...++. .-+-|=+-+.+.++.-++||+.+.+ +...=.|.|+.+++++|++||+.
T Consensus 348 li~DikRR~p~Y~SD~tDa~~~----q~laa~ifiyFA~L~PaIaFG~ll~~~T~g~~gv~E~Llstai~Giifslf~GQ 423 (900)
T TIGR00834 348 LIRDIKRRYPHYLSDFTDALNP----QCLAAVIFIYFAALSPAITFGGLLGEKTRNMMGVSELLISTAVQGVLFALLAAQ 423 (900)
T ss_pred HHHHHHhhcccchHHHhhhhcc----hhHHHHHHHHHHHhhHHhhHHHHHHHhhCCcchHHHHHHHHHHHHHHHhhhcCC
Confidence 4555666655 2223222221 2333444556777888899987652 44555699999999999999999
Q ss_pred CccccchhHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHHHHH
Q 007335 146 REIAIGPVAVVSMLLSALMQNVQDPAADPVAYRKLVFTVTFFAGVFQSVFGLFRLGFLVDFLSHAAIVGFMAGAAIVIGL 225 (607)
Q Consensus 146 ~~~~~Gp~a~~sll~~~~v~~~~~~~~~~~~~~~~a~~~t~l~Gi~~~llG~lrLg~l~~flp~~vi~Gf~~gigl~i~~ 225 (607)
+..++|+++.+.+.......-.. .+...|+...+.+.+.++++.++++.+...++++|+.+..--.|..=+++..+.
T Consensus 424 PL~IlG~TGPilvF~~~ly~~c~---~~~~~yl~~~~WigiW~~~~~~lla~~~~s~lvryiTRFTeEiFa~lIs~IFI~ 500 (900)
T TIGR00834 424 PLLVVGFSGPLLVFEEAFFSFCE---SNGLEYLVGRVWIGLWLVLLVLLLVATEGSFLVRYISRFTQEIFSFLISLIFIY 500 (900)
T ss_pred ceEEecCcccHHHHHHHHHHHHh---hcCCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99999888887776554443322 122358888899999999999999999999999999999999999999999998
Q ss_pred HhhhhhhCccccCC-CCcH---H--------HHH-----------HHH-----HhhcCcCCcchhHHHHHHHHHHHHHHH
Q 007335 226 QQLKGLLGISHFTN-KTDV---V--------SVL-----------GSV-----FSSLHHSYWYPLNFVLGCSFLIFLLIA 277 (607)
Q Consensus 226 ~ql~~~lG~~~~~~-~~~~---~--------~~~-----------~~~-----~~~l~~~~~~~~~~~ig~~~l~~ll~~ 277 (607)
..++.+..+-.... ..+. . ... ... ++..++ .-..++++.+.++.+.+..
T Consensus 501 eai~~L~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~--~~llsliL~lgTf~~a~~L 578 (900)
T TIGR00834 501 ETFSKLIKIFQEHPLQVFYNTLFCVPPKPQGPSVSALLEKDCSKLGGTLGGNNCRFQPN--TALLSLVLMLGTFFLAMFL 578 (900)
T ss_pred HHHHHHHHHHhcCCcccccccccccccccccccccccccccccccccccccccccccch--HHHHHHHHHHHHHHHHHHH
Confidence 88888765421100 0000 0 000 000 000011 2233445555555555555
Q ss_pred HHhhhc--ccc--ccccccchhHHHHHHHHHHHHHhhc-CCCCeeeeecccCCCCCCCCCc--------CC----CChhH
Q 007335 278 RFIGRR--NKK--LFWLPAIAPLLSVILSTLIVYLTKA-DKHGVKIVKHIKGGLNPSSAHQ--------LQ----LTGPH 340 (607)
Q Consensus 278 ~~~~~~--~~~--~~~ip~~~~Li~iv~~t~i~~~~~~-~~~~v~~vg~ip~gl~~p~lp~--------~~----~~~~~ 340 (607)
+.+++. +++ ...+.-.+..++|++.+.+.|.++. .... -.+|.++.+ .-|+ +. +....
T Consensus 579 ~~fk~s~yf~~~vR~~isDfgv~iaI~~~t~v~~~~~~v~~~k----l~Vp~~f~p-t~p~~R~W~i~p~~~~~~~p~w~ 653 (900)
T TIGR00834 579 RKFKNSRYFPGKARRLIGDFGVPISILIMVLVDIFIGDTYTQK----LSVPSGLKV-TNPSARGWFIPPLGENRPFPWWM 653 (900)
T ss_pred HHhCCCCcCCchhhhhhhhhhHHHHHHHHHHHHHHhccCcccc----cCCCCCcCC-CCCCCCCeEEccccccccccHHH
Confidence 443211 111 1124445678899999999987641 1111 135555552 2221 11 12334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhC---CcCCchHHHHHHHHHHHHhhhccccccccchhhhHHhhhc------
Q 007335 341 LGQTAKIGLISAVVALTEAIAVGRSFASIKG---YHLDGNKEMVAMGFMNIVGSLTSCYVATGSFSRTAVNFSA------ 411 (607)
Q Consensus 341 ~~~~~~~~~~~aiv~~~e~i~~~~~~a~~~~---~~~d~nqEl~a~G~aNi~~s~fg~~p~t~s~srS~v~~~~------ 411 (607)
...++..|+.++++-|+|+-..+....++.+ +..-.+-+|.-+|+.|.++|++|-.+.+|+..||..+.++
T Consensus 654 ~~~A~iPAlll~ILiFmD~nIts~iv~~~e~kLkKgsgyH~Dllllg~~~~v~sllGLPw~~aatv~S~~Hv~sL~v~~~ 733 (900)
T TIGR00834 654 MFAAALPALLVFILIFMEQQITTLIVSKKERKLKKGSGFHLDLLLVVGMGGVAALFGLPWLSAATVRSVTHANALTVMSK 733 (900)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHhcCccccCCCCcccchHHHHHHHHHHHHHhcCCCcccccCCcChhhHhHHeeeee
Confidence 5667888889999999998766655544322 1233478999999999999999999999998888776653
Q ss_pred ----C-------C-ccchhhHHHHHHHHHHHHHhHHHHhhchHHHHHHHHHHHhcccC
Q 007335 412 ----G-------C-QTVVSNIVMAITVLLSLELFTSLLYYTPIAILASIILSALPGLI 457 (607)
Q Consensus 412 ----G-------~-rT~la~iv~a~~~ll~ll~l~~l~~~iP~~vLa~ili~~~~~li 457 (607)
| + .+|+++++.++++.+.+ +.+|++.+||++||.|+.++.|+.-+
T Consensus 734 ~~~~Ge~~~i~~V~EQRvT~ll~~lLiglsv-~~~PvL~~IP~aVL~GvFlYMGv~SL 790 (900)
T TIGR00834 734 ASAPGEKAQIQEVREQRVTGLLVAVLVGLSI-LMEPILKRIPLAVLFGIFLYMGVTSL 790 (900)
T ss_pred ccCCCCCCccceeEeeehHHHHHHHHHHHHH-HHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 1 1 47899999998776655 68999999999999999999998754
No 16
>KOG1172 consensus Na+-independent Cl/HCO3 exchanger AE1 and related transporters (SLC4 family) [Inorganic ion transport and metabolism]
Probab=99.55 E-value=2.9e-11 Score=135.40 Aligned_cols=338 Identities=13% Similarity=0.133 Sum_probs=227.7
Q ss_pred HhhHHHHHHhhC------CCchhhHHHhhhhHHHHHHhcCCCccccchhHHHHHHHHHHHhhhcCCCCChHHHHHHHHHH
Q 007335 111 IPQSIGYANLAK------LDPQYGLYTSVIPPLIYALMGSSREIAIGPVAVVSMLLSALMQNVQDPAADPVAYRKLVFTV 184 (607)
Q Consensus 111 iPq~~aya~lag------lpp~~GLyss~i~~liy~lfGss~~~~~Gp~a~~sll~~~~v~~~~~~~~~~~~~~~~a~~~ 184 (607)
+=-.++|+.+-+ +...=.|.++.+++++|++||+.+..++|+++.+.++-..+..-.. +++..|+...+.+
T Consensus 374 l~P~ItFG~ll~~~Tdg~~~v~E~L~stal~GiifslfggQPLlIlg~TgP~lVfe~~lf~f~~---~~~~dyl~~r~wV 450 (876)
T KOG1172|consen 374 LLPAITFGGLLGEATDGLIGVVETLLSTALCGIIFSLFGGQPLLILGVTGPLLVFEKALFKFCK---DNGLDYLAFRAWV 450 (876)
T ss_pred hhhHhhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHhcCCceEEEecCccHHHHHHHHHHHHh---hCCCchhhHHHHH
Confidence 334566665442 3334558899999999999999999999888877776443333221 2345788889999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHHHHHHhhhhhhCccccCCCC-c--H---H-HHHHHHHhhcCc-
Q 007335 185 TFFAGVFQSVFGLFRLGFLVDFLSHAAIVGFMAGAAIVIGLQQLKGLLGISHFTNKT-D--V---V-SVLGSVFSSLHH- 256 (607)
Q Consensus 185 t~l~Gi~~~llG~lrLg~l~~flp~~vi~Gf~~gigl~i~~~ql~~~lG~~~~~~~~-~--~---~-~~~~~~~~~l~~- 256 (607)
++.+.++.+++..+....+++|+.+..--.|..=|++..+...++.+.++....... + . . .... -..+.+.
T Consensus 451 glW~~~l~illaa~~as~lv~~~TRfteEiF~~LIs~iFi~eai~kl~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 529 (876)
T KOG1172|consen 451 GLWTAFLLILLAATNASSLVKYITRFTEEIFGLLISLIFIYEAIKKLIKIFKGLPIEFDSKPNPGADWSGP-ECESVSGT 529 (876)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccCCcccccccc-cccccCcc
Confidence 999999999999999999999999999999999999999999999777654210000 0 0 0 0000 0001100
Q ss_pred ---CCcchhHHHHHHHHHHHHHHHHHhhhcccccc--------ccccchhHHHHHHHHHHHHHhh-cCCCCeeeeecccC
Q 007335 257 ---SYWYPLNFVLGCSFLIFLLIARFIGRRNKKLF--------WLPAIAPLLSVILSTLIVYLTK-ADKHGVKIVKHIKG 324 (607)
Q Consensus 257 ---~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~--------~ip~~~~Li~iv~~t~i~~~~~-~~~~~v~~vg~ip~ 324 (607)
..+.+.+..++++..+..+.....-|++++.. ++.-.+..++|++.+++.|+.+ ....++ .+|.
T Consensus 530 ~~~~~~~p~~~llslil~~gt~~~a~~lr~fr~s~yf~~~~R~~isDfgvpisIl~~s~i~~~~~~~~~~kl----~vp~ 605 (876)
T KOG1172|consen 530 LLGSSCRPDTALLSLILMFGTLFLALTLRKFKSSRYFPRKVRSLISDFGVPLSILVFSLIDYFGGSVETPKL----PVPS 605 (876)
T ss_pred cCCCcCCcchHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHhhhhHHHHHHHHHHHhhccccCCCcc----ccCc
Confidence 01334444444443333333322223333222 2334466788888899888875 222222 2334
Q ss_pred CCCCCCCC--------cCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhC---CcCCchHHHHHHHHHHHHhhhc
Q 007335 325 GLNPSSAH--------QLQLTGPHLGQTAKIGLISAVVALTEAIAVGRSFASIKG---YHLDGNKEMVAMGFMNIVGSLT 393 (607)
Q Consensus 325 gl~~p~lp--------~~~~~~~~~~~~~~~~~~~aiv~~~e~i~~~~~~a~~~~---~~~d~nqEl~a~G~aNi~~s~f 393 (607)
++|++.-+ .....+.++..++..++.++++-|+|+-..+....++.+ +....+-+|+-+|+.|.++|++
T Consensus 606 ~~~~t~~~~rgw~v~~~~~~P~~~~~~A~ipalll~iLiFmDqqIts~iv~rke~kLKKgsgyH~DLlllgil~~icsll 685 (876)
T KOG1172|consen 606 VFPPTWPFDRGWFVPPFGKNPWWYVFAALIPALLLTILIFMDQQITAVIVNRKENKLKKGSGYHLDLLLLGILTLICSLL 685 (876)
T ss_pred CCCCCCcccCCeeeCCCCCCCHHHHHHHHHHHHHHHHHHHhcchHHHHHhhcccccCCCCcchhHHHHHHHHHHHHHHhc
Confidence 44433211 112334566778888999999999998766665544322 1234467899999999999999
Q ss_pred cccccccchhhhHHhhhc-----------------CC-ccchhhHHHHHHHHHHHHHhHHHHhhchHHHHHHHHHHHhcc
Q 007335 394 SCYVATGSFSRTAVNFSA-----------------GC-QTVVSNIVMAITVLLSLELFTSLLYYTPIAILASIILSALPG 455 (607)
Q Consensus 394 g~~p~t~s~srS~v~~~~-----------------G~-rT~la~iv~a~~~ll~ll~l~~l~~~iP~~vLa~ili~~~~~ 455 (607)
|-.+.+|+..+|....++ |+ .+|++|++.++.+.+ ..++.|++..||++||.|+-.+.|+.
T Consensus 686 GLPw~~~a~p~S~~H~~SL~v~~~~~apge~~~i~~V~EQRvtgll~~llvgl-s~~~~pvL~~IP~~VL~GvFlYMgv~ 764 (876)
T KOG1172|consen 686 GLPWSNAATVQSPMHTKSLAVESETSAPGEQPQIVGVREQRVTGLLQFLLVGL-SVLLLPVLKLIPMPVLYGVFLYMGVS 764 (876)
T ss_pred CCCccccccccCHHHHHHHHHhhcccCCCCccccccchhhhhHHHHHHHHHHH-HHHHHHHHhhccHHHHHHHHHHHhhc
Confidence 999999999998877663 22 467999999998884 44899999999999999999999987
Q ss_pred cC
Q 007335 456 LI 457 (607)
Q Consensus 456 li 457 (607)
=+
T Consensus 765 SL 766 (876)
T KOG1172|consen 765 SL 766 (876)
T ss_pred cC
Confidence 54
No 17
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=99.55 E-value=1.5e-11 Score=130.15 Aligned_cols=341 Identities=16% Similarity=0.153 Sum_probs=201.4
Q ss_pred hhHHHHHHHHHHHH--hhHHHH--HHhhCCCch---hhHH----HhhhhHHHHHHhcCCCccccchhHHHHHHHHHHHhh
Q 007335 98 SDLMAGLTLASLSI--PQSIGY--ANLAKLDPQ---YGLY----TSVIPPLIYALMGSSREIAIGPVAVVSMLLSALMQN 166 (607)
Q Consensus 98 ~D~~aGltv~~~~i--Pq~~ay--a~laglpp~---~GLy----ss~i~~liy~lfGss~~~~~Gp~a~~sll~~~~v~~ 166 (607)
.-+.||+...++.. |-.+=+ +.-.|+++. ..+. ++.+.+++.+..= ..++..+....-+.++.....+
T Consensus 22 s~~~aG~va~lvg~~~~~~iv~~a~~~~g~s~aq~~swl~a~~~~~Gl~ti~lS~~~-r~Pi~~awStPGaAll~~~~~~ 100 (395)
T TIGR00843 22 PTLIAGFLAVLIGYAGPAAIFFQAAIKAGASTAMIIGWITAIGIAAAVSGIFLSIRF-KTPVLTAWSAPGAALLVTGFPG 100 (395)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCeeeecCchHHHHHHHhcCC
Confidence 35667877776443 222222 223466664 2233 3334444444443 4577778775555555443333
Q ss_pred hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhhhhccHHHHHHHHHHHHHHHHHHhhhhhhCccccCCCCcHHH
Q 007335 167 VQDPAADPVAYRKLVFTVTFFAGVFQSVFGLFR-LGFLVDFLSHAAIVGFMAGAAIVIGLQQLKGLLGISHFTNKTDVVS 245 (607)
Q Consensus 167 ~~~~~~~~~~~~~~a~~~t~l~Gi~~~llG~lr-Lg~l~~flp~~vi~Gf~~gigl~i~~~ql~~~lG~~~~~~~~~~~~ 245 (607)
.. +..+..+-+++|++.+++|+.+ ++|+++++|+++..|.++|+.+.....-++.+.
T Consensus 101 ~~---------~~eavGAfiv~g~lilllGltG~f~rl~~~IP~~Va~amLAGIlL~f~l~~~~a~~------------- 158 (395)
T TIGR00843 101 IS---------LNEAIAAFITAAALIFLCGITGLFAKLLKIIPHGIAAAMLAGILFQFGLGAFAALD------------- 158 (395)
T ss_pred CC---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 22 5678888999999999999999 599999999999999999998877643222211
Q ss_pred HHHHHHhhcCcCCcchhHHHHHHHHHHHHHHHHHhhhccccccccccchhHHHHHHHHHHHHHhhcCCCCeeeeecccCC
Q 007335 246 VLGSVFSSLHHSYWYPLNFVLGCSFLIFLLIARFIGRRNKKLFWLPAIAPLLSVILSTLIVYLTKADKHGVKIVKHIKGG 325 (607)
Q Consensus 246 ~~~~~~~~l~~~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~ip~~~~Li~iv~~t~i~~~~~~~~~~v~~vg~ip~g 325 (607)
+ ++ .++...++..++. ||+ .|.++.++++++++++++..+..+. + .+...
T Consensus 159 ----------~---~p---ll~~~mll~~l~~----~r~-----~Pr~avl~aLlvG~iva~~~G~~~~--~---~~~~~ 208 (395)
T TIGR00843 159 ----------G---LF---LICFSMLLCWLAS----KAF-----APRYAMIAALICGIAFSFALGDMNP--T---DLDFK 208 (395)
T ss_pred ----------H---hH---HHHHHHHHHHHHH----HHh-----cchHHHHHHHHHHHHHHHHhcCCCc--c---ccccc
Confidence 0 11 1222222222222 332 2223788999999999988763221 1 11112
Q ss_pred CCC--CCCCcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCcCCchHHHHHHHHHHHHhhhccccccc----
Q 007335 326 LNP--SSAHQLQLTGPHLGQTAKIGLISAVVALTEAIAVGRSFASIKGYHLDGNKEMVAMGFMNIVGSLTSCYVAT---- 399 (607)
Q Consensus 326 l~~--p~lp~~~~~~~~~~~~~~~~~~~aiv~~~e~i~~~~~~a~~~~~~~d~nqEl~a~G~aNi~~s~fg~~p~t---- 399 (607)
++. +..|++++. ..+..++...++.+.....-+-...+.+||+.+.|+-+.+.|++|++++.|||++.+
T Consensus 209 l~~p~~~~P~fs~~-----a~~~l~lPl~~vtm~~qnlpgiavl~aaGy~~p~~~~~~~tGl~sll~ApfGg~~~nlaai 283 (395)
T TIGR00843 209 IALPQFIAPDFSFA-----HSLNLALPLFLVSLAGQFAPGIAALKAAGYNAPAKPIIAAAGLAALFAAFAGGISIGIAAI 283 (395)
T ss_pred cccceeeCCCCCHH-----HHHHHHHHHHHHHHHhcCchHHHHHHHcCCCCCchHHHHHHHHHHHHHhccCCchhhhhHH
Confidence 323 335655442 233334444444443332223344556899999999999999999999999999933
Q ss_pred --cchhhhHHhhhcCCccchhhHHHHHHHHHHHHH---hHHHHhhchHHHHHHHHHHHhcccCCHHHHHHHhccCccchh
Q 007335 400 --GSFSRTAVNFSAGCQTVVSNIVMAITVLLSLEL---FTSLLYYTPIAILASIILSALPGLIDINEAINIYKVDKLDFL 474 (607)
Q Consensus 400 --~s~srS~v~~~~G~rT~la~iv~a~~~ll~ll~---l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l~k~~~~d~~ 474 (607)
.-+.....+. .++|+-.+++..|++.++..++ +..++..+|++..+++-=.+.++-+.. .+..-.+ +..+..
T Consensus 284 taAic~G~~ah~-d~~rR~~a~i~~Gv~yll~glfag~i~~l~~~~P~~li~~laGlAll~~~~~-~l~~a~~-~~~~r~ 360 (395)
T TIGR00843 284 TAAICMGKDAHE-DKDKRWIAAAAAGIFYLLAGLFAGAITALFAALPKELIAALAGLALLGAIAG-NIKIALH-EDQERD 360 (395)
T ss_pred hHHHhcCccccc-CcCccchHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH-HHHHHhc-CcchhH
Confidence 2222223333 3788889999999999988877 456889999987666543344443321 1222222 222334
Q ss_pred HHHHHHHHHH----HH---HHHHHHHHHHHHH
Q 007335 475 ACIGAFLGVL----FA---SVEIGLLAAVTIS 499 (607)
Q Consensus 475 v~~~tf~~~~----~~---~~~~Gi~~Gv~~s 499 (607)
..++||+.|. ++ +-..|+++|+...
T Consensus 361 ~a~~tflvtaSg~~~~gigaafWgl~~G~~~~ 392 (395)
T TIGR00843 361 AALIAFLATASGLHFLGIGSAFWGLCAGGLAY 392 (395)
T ss_pred HHHHHHHHHHhcCCcccccHHHHHHHHHHHHH
Confidence 4455555543 23 3345777776544
No 18
>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]. Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane
Probab=99.33 E-value=3.9e-09 Score=110.02 Aligned_cols=273 Identities=16% Similarity=0.183 Sum_probs=173.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-hhhhhhhccHHHHHHHHHHHHHHHHHHhhhhhhCccccCCCCcHHHHHHHHHhhcCc
Q 007335 178 RKLVFTVTFFAGVFQSVFGLFR-LGFLVDFLSHAAIVGFMAGAAIVIGLQQLKGLLGISHFTNKTDVVSVLGSVFSSLHH 256 (607)
Q Consensus 178 ~~~a~~~t~l~Gi~~~llG~lr-Lg~l~~flp~~vi~Gf~~gigl~i~~~ql~~~lG~~~~~~~~~~~~~~~~~~~~l~~ 256 (607)
+..+..+-+++|++.++.|+.+ ++++++++|.++..++++|+-+-..++-++. +.+
T Consensus 87 ~~eavGAfl~~~~Li~l~G~tg~~~rl~~~IP~~ia~AMLAGvLl~f~l~~f~a-----------------------~~~ 143 (378)
T PF03594_consen 87 FAEAVGAFLVAGALILLLGVTGLFGRLMRRIPPPIASAMLAGVLLPFGLAAFTA-----------------------LQA 143 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH-----------------------HHh
Confidence 5667788899999999999999 5999999999999999999988766443322 111
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHhhhccccccccccchhHHHHHHHHHHHHHhhcCCCCeeeeecccCCCCC--CCCCcC
Q 007335 257 SYWYPLNFVLGCSFLIFLLIARFIGRRNKKLFWLPAIAPLLSVILSTLIVYLTKADKHGVKIVKHIKGGLNP--SSAHQL 334 (607)
Q Consensus 257 ~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~ip~~~~Li~iv~~t~i~~~~~~~~~~v~~vg~ip~gl~~--p~lp~~ 334 (607)
...+.+... +..++.|++.+|+ +.+.+++.+..+++..+.-+ . ..++..++. +..|+|
T Consensus 144 -----~P~l~~~ml-~~~l~~~r~~pr~---------av~~al~~g~~~a~~~g~~~--~---~~~~~~~~~p~~~~P~F 203 (378)
T PF03594_consen 144 -----DPLLVGPML-AVFLLARRFSPRY---------AVLAALVAGVAVAALTGQLH--P---SALQLSLAHPVFTTPEF 203 (378)
T ss_pred -----HHHHHHHHH-HHHHHHHHHcchh---------HHHHHHHHHHHHHHhcCCCC--c---cccccccceeEEECCcc
Confidence 111222222 3333344444443 44566777777776654211 1 111223333 344655
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCcCCchHHHHHHHHHHHHhhhccccccccchhhhHHhhhc--C
Q 007335 335 QLTGPHLGQTAKIGLISAVVALTEAIAVGRSFASIKGYHLDGNKEMVAMGFMNIVGSLTSCYVATGSFSRTAVNFSA--G 412 (607)
Q Consensus 335 ~~~~~~~~~~~~~~~~~aiv~~~e~i~~~~~~a~~~~~~~d~nqEl~a~G~aNi~~s~fg~~p~t~s~srS~v~~~~--G 412 (607)
++. ..+.+++.+.++.+...-.-+-+.-+.+||+.+.|+-+..-|++|++.+.|||++.+-+---.++...- +
T Consensus 204 s~~-----a~v~lalPL~ivtmasQnlpG~aVL~a~GY~~p~~~~~~~tGl~s~l~ApfGg~~~nlAaitaAIc~g~eah 278 (378)
T PF03594_consen 204 SWS-----ALVSLALPLFIVTMASQNLPGIAVLRAAGYQPPVNPLITVTGLASLLAAPFGGHAVNLAAITAAICAGPEAH 278 (378)
T ss_pred cHH-----HHHHHHHHHHHHHHHhcchHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHcCCccC
Confidence 543 455566667777776554555556677999999999999999999999999999988776666666653 3
Q ss_pred C--ccc-hhhHHHHHHHHHHHHH---hHHHHhhchHHHHHHHHHHHhcccCCHHHHHHHhccCccchhHHHHHHHHHH--
Q 007335 413 C--QTV-VSNIVMAITVLLSLEL---FTSLLYYTPIAILASIILSALPGLIDINEAINIYKVDKLDFLACIGAFLGVL-- 484 (607)
Q Consensus 413 ~--rT~-la~iv~a~~~ll~ll~---l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l~k~~~~d~~v~~~tf~~~~-- 484 (607)
. +.| .+++++|+..++..++ +..++..+|++..+.+-=.+.++-+. ..+..-++.+ .+....++||+.+.
T Consensus 279 ~dp~rRy~Aav~~Gv~yll~Gl~a~~~v~l~~~lP~~li~~lAGLALlg~l~-~sl~~A~~~~-~~r~aAlvtFlvtaSG 356 (378)
T PF03594_consen 279 PDPSRRYIAAVAAGVFYLLFGLFAAALVALFAALPPALIAALAGLALLGTLG-GSLQTAFSDE-KYREAALVTFLVTASG 356 (378)
T ss_pred CCcccchHHHHHHhHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-HHHHHHhcCc-chhHHHHHHHHHHHcC
Confidence 2 223 7999999999988887 55678899998666553333333322 2233334322 22334455555543
Q ss_pred --HH---HHHHHHHHHHHHHH
Q 007335 485 --FA---SVEIGLLAAVTISF 500 (607)
Q Consensus 485 --~~---~~~~Gi~~Gv~~s~ 500 (607)
+. +-..|+++|++.++
T Consensus 357 isl~gIgaafWgLv~G~~~~~ 377 (378)
T PF03594_consen 357 ISLLGIGAAFWGLVAGLLVHL 377 (378)
T ss_pred CCcccccHHHHHHHHHHHHHh
Confidence 22 33457777776653
No 19
>PF00955 HCO3_cotransp: HCO3- transporter family Only partial structure; InterPro: IPR011531 Bicarbonate (HCO3 -) transport mechanisms are the principal regulators of pH in animal cells. Such transport also plays a vital role in acid-base movements in the stomach, pancreas, intestine, kidney, reproductive organs and the central nervous system. Functional studies have suggested four different HCO3 - transport modes. Anion exchanger proteins exchange HCO3 - for Cl- in a reversible, electroneutral manner []. Na+/HCO3 - co-transport proteins mediate the coupled movement of Na+ and HCO3 - across plasma membranes, often in an electrogenic manner []. Na- driven Cl-/HCO3 - exchange and K+/HCO3 - exchange activities have also been detected in certain cell types, although the molecular identities of the proteins responsible remain to be determined. Sequence analysis of the two families of HCO3 - transporters that have been cloned to date (the anion exchangers and Na+/HCO3 - co-transporters) reveals that they are homologous. This is not entirely unexpected, given that they both transport HCO3 - and are inhibited by a class of pharmacological agents called disulphonic stilbenes []. They share around ~25-30% sequence identity, which is distributed along their entire sequence length, and have similar predicted membrane topologies, suggesting they have ~10 transmembrane (TM) domains. This domain is found at the C terminus of many bicarbonate transport proteins. It is also found in some plant proteins responsible for boron transport []. In these proteins it covers almost the entire length of the sequence.; GO: 0006820 anion transport, 0016021 integral to membrane; PDB: 1BH7_A 1BTT_A 1BZK_A 1BTQ_A 1BTR_A 1BNX_A 1BTS_A.
Probab=99.08 E-value=4e-11 Score=131.03 Aligned_cols=349 Identities=15% Similarity=0.202 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhhHHHHHHhhC------CCchhhHHHhhhhHHHHHHhcCCCccccchhHHHHHHHHHHHhhhcCCCCChH
Q 007335 102 AGLTLASLSIPQSIGYANLAK------LDPQYGLYTSVIPPLIYALMGSSREIAIGPVAVVSMLLSALMQNVQDPAADPV 175 (607)
Q Consensus 102 aGltv~~~~iPq~~aya~lag------lpp~~GLyss~i~~liy~lfGss~~~~~Gp~a~~sll~~~~v~~~~~~~~~~~ 175 (607)
+=+-+.+.++.-+++|+.+.+ +...-.+.++.+.+++|++||+.+..++|+++.+.+.......-.. ....
T Consensus 38 ~~~flyfa~l~PaItFG~ll~~~T~~~~gv~e~l~~~~i~Gi~f~lf~gQPL~Ilg~TgP~~vf~~~l~~~~~---~~~~ 114 (510)
T PF00955_consen 38 ATLFLYFACLSPAITFGGLLGEATDGAIGVMEVLLSTAICGIIFSLFSGQPLTILGSTGPVLVFEKILYKFCK---SYGL 114 (510)
T ss_dssp HHHHHHHHHHHHHHSSS-SS---------HHHHHHHHHHHHHHHHHCC--------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---cccc
Confidence 444555677778888877653 3444568899999999999999999999999888776544332211 1234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHHHHHHhhhhhhCcccc-CCCCcH---HH------
Q 007335 176 AYRKLVFTVTFFAGVFQSVFGLFRLGFLVDFLSHAAIVGFMAGAAIVIGLQQLKGLLGISHF-TNKTDV---VS------ 245 (607)
Q Consensus 176 ~~~~~a~~~t~l~Gi~~~llG~lrLg~l~~flp~~vi~Gf~~gigl~i~~~ql~~~lG~~~~-~~~~~~---~~------ 245 (607)
+|++.-..+.+.++++.+++..+...++++|+.+..-..|..=+++..+...++.+..+... +-..+. ..
T Consensus 115 ~fl~~~~wig~w~~~~~~~~~~~~~s~lv~~~TRfTeEiF~~lIs~iFi~ea~~~l~~~~~~~p~~~~~~~~~~c~c~~~ 194 (510)
T PF00955_consen 115 DFLPFRAWIGIWTAIFLLVLAAFNASFLVRYITRFTEEIFALLISIIFIYEAIKKLVKIFKKYPLNSDYVTQYSCQCTPP 194 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 57788889999999999999999999999999999999999999999999988887755311 000000 00
Q ss_pred -------------------HHH----HHHhhcCcC----------CcchhH----HHHHHHHHHHHHHHHHhh------h
Q 007335 246 -------------------VLG----SVFSSLHHS----------YWYPLN----FVLGCSFLIFLLIARFIG------R 282 (607)
Q Consensus 246 -------------------~~~----~~~~~l~~~----------~~~~~~----~~ig~~~l~~ll~~~~~~------~ 282 (607)
.+. +-..+.+.. ...+.+ +++.+.++.+....+.++ +
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~g~~~g~~c~~~~~~~p~taLlSliL~lgTf~la~~L~~fk~S~yf~~ 274 (510)
T PF00955_consen 195 ENSNNSTLNPWTNLNNGSINWSNLSNSECENINGELVGTSCDDHVQYQPDTALLSLILALGTFWLAYTLRQFKNSPYFPR 274 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHhcCCcCccH
Confidence 000 000000000 012222 223333333333333221 2
Q ss_pred ccccccccccchhHHHHHHHHHHHHHhhcCCCCeeeeecccCCCCCCC-------CCcC-CCChhHHHHHHHHHHHHHHH
Q 007335 283 RNKKLFWLPAIAPLLSVILSTLIVYLTKADKHGVKIVKHIKGGLNPSS-------AHQL-QLTGPHLGQTAKIGLISAVV 354 (607)
Q Consensus 283 ~~~~~~~ip~~~~Li~iv~~t~i~~~~~~~~~~v~~vg~ip~gl~~p~-------lp~~-~~~~~~~~~~~~~~~~~aiv 354 (607)
+.++ .+.-.+..++|++.+.+.+.++.+.... ++|.++.+.. ++.+ +........++..++.++++
T Consensus 275 ~vR~--~isDf~v~iaI~~~~~~~~~~~~~~~kL----~vp~~f~pt~~~~r~W~v~p~~~~p~w~~~aA~~palll~iL 348 (510)
T PF00955_consen 275 WVRE--IISDFGVPIAILIMTLVDYLFGVDTPKL----NVPSSFKPTSPGKRGWFVNPFGSLPWWAIFAAIIPALLLTIL 348 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHH--hHHhhHHHHHHHHHHHHHHHhccccccc----CCCCCCCCCCCCCCCeecCcccCCCHHHHHHHHHHHHHHHHH
Confidence 2222 2445566788888888887655221111 3444443211 1111 11112233455557777888
Q ss_pred HHHHHHHHHHHHhhhhC---CcCCchHHHHHHHHHHHHhhhccccccccchhhhHHhhhcCC------------------
Q 007335 355 ALTEAIAVGRSFASIKG---YHLDGNKEMVAMGFMNIVGSLTSCYVATGSFSRTAVNFSAGC------------------ 413 (607)
Q Consensus 355 ~~~e~i~~~~~~a~~~~---~~~d~nqEl~a~G~aNi~~s~fg~~p~t~s~srS~v~~~~G~------------------ 413 (607)
-++|+-..+....++.+ +..-.+-+|.-.|+.|.++|++|-.+.+++..+|..+.++=.
T Consensus 349 ~F~DqnIts~ivn~~e~kLkKg~gyH~DL~llgi~~~v~sllGLPw~~aa~~~S~~Hv~sL~~~~~~~~pGe~~~i~~V~ 428 (510)
T PF00955_consen 349 FFMDQNITSLIVNRPENKLKKGSGYHLDLFLLGIITLVCSLLGLPWMNAATPQSPMHVRSLAVESETSAPGEKPKIVGVR 428 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhHhHHHhCChhhccCCCCcccHHHHHHHHHHHHHHHcCCCCcccCccCCHHHhCcccEEeccccCCCCCeeCeEE
Confidence 88887554444333221 123345689999999999999999999999988877665322
Q ss_pred ccchhhHHHHHHHHHHHHHhHHHHhhchHHHHHHHHHHHhcccCCHH
Q 007335 414 QTVVSNIVMAITVLLSLELFTSLLYYTPIAILASIILSALPGLIDIN 460 (607)
Q Consensus 414 rT~la~iv~a~~~ll~ll~l~~l~~~iP~~vLa~ili~~~~~li~~~ 460 (607)
.+|+++++.++++.+.+ ++.|++.+||++||.|+.++.|+.-++..
T Consensus 429 EqRvT~l~~~~Ligls~-~l~pvL~~IP~~VL~GvFlymG~~sL~gn 474 (510)
T PF00955_consen 429 EQRVTGLLVHLLIGLSL-FLLPVLKLIPMPVLYGVFLYMGVTSLSGN 474 (510)
T ss_dssp -----------------------------------------------
T ss_pred EecccHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHhheeeeecCc
Confidence 57899999998776665 67899999999999999999998766443
No 20
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=98.94 E-value=6.1e-10 Score=99.22 Aligned_cols=75 Identities=35% Similarity=0.580 Sum_probs=60.9
Q ss_pred CCCCcCCCcEEEEEEccccEeEcchHHHHHHHHHHHHhhhhhhhhhcCCCCcEEEEEccCCCcccHHHHHHHHHHHhC
Q 007335 530 FPMAIKTPGILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKN 607 (607)
Q Consensus 530 ~~~~~~~~~i~i~r~~g~~L~F~n~~~~~~~i~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iD~sa~~~L~~l~~~ 607 (607)
|++.+..+++.|+|++|+ |+|+|++++++++.+++.+.+++.+ ...+.+.||+||+.|++||++|+++|.++.++
T Consensus 1 y~~~~~~~~v~ii~~~g~-l~f~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~vIlD~s~v~~iDssgi~~L~~~~~~ 75 (117)
T PF01740_consen 1 YIEIETHDGVLIIRLDGP-LFFANAEEFRDRIRKLIDEDPERIK--KRQTIKNVILDMSGVSFIDSSGIQALVDIIKE 75 (117)
T ss_dssp SCEEEEETTEEEEEEESE-ESHHHHHHHHHHHHHHHCCSSS--H--TSSSSSEEEEEETTESEESHHHHHHHHHHHHH
T ss_pred CCeeEEECCEEEEEEeeE-EEHHHHHHHHHHHHHhhhccccccc--ccccceEEEEEEEeCCcCCHHHHHHHHHHHHH
Confidence 456667789999999999 9999999999999987654321111 23457999999999999999999999998763
No 21
>COG3135 BenE Uncharacterized protein involved in benzoate metabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.80 E-value=2.2e-06 Score=87.87 Aligned_cols=225 Identities=16% Similarity=0.205 Sum_probs=144.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-hhhhhhhccHHHHHHHHHHHHHHHHHHhhhhhhCccccCCCCcHHHHHHHHHhhcCc
Q 007335 178 RKLVFTVTFFAGVFQSVFGLFR-LGFLVDFLSHAAIVGFMAGAAIVIGLQQLKGLLGISHFTNKTDVVSVLGSVFSSLHH 256 (607)
Q Consensus 178 ~~~a~~~t~l~Gi~~~llG~lr-Lg~l~~flp~~vi~Gf~~gigl~i~~~ql~~~lG~~~~~~~~~~~~~~~~~~~~l~~ 256 (607)
...+..+-+.+|...++.|++| ++++++-+|+++..++.+|+=+-..+..++.+-
T Consensus 102 ~~eaVGAfiVt~~li~l~G~~~~l~rl~~~IP~sla~AmlAGILL~F~l~a~~a~~------------------------ 157 (402)
T COG3135 102 FAEAVGAFIVTGALIILCGLTGPLTRLMRIIPPSLAAAMLAGILLRFGLKAFKALP------------------------ 157 (402)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhccC------------------------
Confidence 4567788889999999999999 699999999999999999988877655444321
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHhhhccccccccccchhHHHHHHHHHHHHHhhcCCCCeeeeecccCCCCCCCCCcCCC
Q 007335 257 SYWYPLNFVLGCSFLIFLLIARFIGRRNKKLFWLPAIAPLLSVILSTLIVYLTKADKHGVKIVKHIKGGLNPSSAHQLQL 336 (607)
Q Consensus 257 ~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~ip~~~~Li~iv~~t~i~~~~~~~~~~v~~vg~ip~gl~~p~lp~~~~ 336 (607)
.++ .+.+..++..++.|.+.+|+ +...+++++..++...+.-.+ ......+ ..|....|+|++
T Consensus 158 --~~p---~l~lpmv~~~ll~r~f~pr~---------aV~aalvvgv~va~~~G~~~~-~~~~~~~--~~p~~v~P~Fs~ 220 (402)
T COG3135 158 --TQP---LLVLPMVLAYLLARVFAPRY---------AVIAALVVGVLVAALLGDLHT-ALVALEI--STPTWVTPEFSF 220 (402)
T ss_pred --CCh---HHHHHHHHHHHHHHHcCchH---------HHHHHHHHHHHHHHHhCcccc-ccccccc--CcceeeCCcccH
Confidence 111 11122222223345555543 556777788887777653111 0000111 122233454443
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCcCCchHHHHHHHHHHHHhhhccccccccchhhhHHhhhc-----
Q 007335 337 TGPHLGQTAKIGLISAVVALTEAIAVGRSFASIKGYHLDGNKEMVAMGFMNIVGSLTSCYVATGSFSRTAVNFSA----- 411 (607)
Q Consensus 337 ~~~~~~~~~~~~~~~aiv~~~e~i~~~~~~a~~~~~~~d~nqEl~a~G~aNi~~s~fg~~p~t~s~srS~v~~~~----- 411 (607)
...+.+++.+.++.+...-.-+-+.=+.+||+.+++--+.+-|+..+.++.||++..+-.--.-++...-
T Consensus 221 -----~A~l~lalPL~lvtmasQN~pGiAvLka~gY~pp~~pl~~~TGl~sll~ApfG~~t~nLaAItAAic~gpdaHpD 295 (402)
T COG3135 221 -----AAMLSLALPLFLVTMASQNLPGIAVLKAAGYQPPPSPLIVATGLASLLSAPFGGHTVNLAAITAAICTGPDAHPD 295 (402)
T ss_pred -----HHHHHHhHHHHHHHHHhccCccceeehhcCCCCCCchHHHHhHHHHHHhcccccceecHHHHHHHHhcCCCCCCC
Confidence 3455556666666665443333334456899999999999999999999999999877443333332221
Q ss_pred CCccchhhHHHHHHHHHHHHHhH---HHHhhchHHHHHHH
Q 007335 412 GCQTVVSNIVMAITVLLSLELFT---SLLYYTPIAILASI 448 (607)
Q Consensus 412 G~rT~la~iv~a~~~ll~ll~l~---~l~~~iP~~vLa~i 448 (607)
-.|-=.+++++|+.-+++.+|.+ .++..+|+..++.+
T Consensus 296 ~~rry~Aa~~agi~ylv~GlF~~~~~~l~~alP~~li~~l 335 (402)
T COG3135 296 PARRYTAALVAGIFYLLAGLFGGALVGLMAALPASLIAAL 335 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHH
Confidence 12444799999999999988844 56778998755443
No 22
>KOG1292 consensus Xanthine/uracil transporters [Nucleotide transport and metabolism]
Probab=98.76 E-value=9.2e-07 Score=94.10 Aligned_cols=295 Identities=13% Similarity=0.101 Sum_probs=167.8
Q ss_pred hhHHHhhhhHHHHHHhcCCCccccchhHHHHHHHHHHHh--hhcCCC---C-ChH---HHHHHHHHHHHHHHHHHHHHHH
Q 007335 127 YGLYTSVIPPLIYALMGSSREIAIGPVAVVSMLLSALMQ--NVQDPA---A-DPV---AYRKLVFTVTFFAGVFQSVFGL 197 (607)
Q Consensus 127 ~GLyss~i~~liy~lfGss~~~~~Gp~a~~sll~~~~v~--~~~~~~---~-~~~---~~~~~a~~~t~l~Gi~~~llG~ 197 (607)
.-++++.+..++-..||+...+..||.-+.-.-+-+.+. +...+. + +.+ ..++..-.+.++++++|.++|+
T Consensus 54 T~~f~sGI~TllQt~fG~RLp~v~G~Sfafl~p~~~i~~~~~~~~~~~~~~~~~~~~~~~mr~iqGAlivas~vqiilG~ 133 (510)
T KOG1292|consen 54 TIFFVSGITTLLQTTFGTRLPLVQGPSFAFLPPALAIISLPRFTCITTPHETDTERFQHRMREIQGALIVASLVQIILGF 133 (510)
T ss_pred HHhhhccHHHHHHHHhhcccccccccceehhhHHHHHHhccccCCCCCcccchhHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 457788899999999999999999996433222233333 222211 1 111 2245667889999999999999
Q ss_pred hhh-hhhhhhccHHHHHHHHHHHHHHHHHHhhhhhhCccccCCCCcHHHHHHHHHhhcCcCCcchhHHHHHHHHHHHHHH
Q 007335 198 FRL-GFLVDFLSHAAIVGFMAGAAIVIGLQQLKGLLGISHFTNKTDVVSVLGSVFSSLHHSYWYPLNFVLGCSFLIFLLI 276 (607)
Q Consensus 198 lrL-g~l~~flp~~vi~Gf~~gigl~i~~~ql~~~lG~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ig~~~l~~ll~ 276 (607)
.++ |++.+|+++-.+.-.++-+|+.+.-... .++.+ +| -+|+.-++++++
T Consensus 134 sGl~g~l~rfi~Plti~P~v~lvgl~l~~~~~-----------------------~~~~~---~w---eI~l~~~llli~ 184 (510)
T KOG1292|consen 134 SGLWGNLLRFIGPLTIVPLVALVGLGLFQDGF-----------------------PKLGK---HW---EISLPEILLLIL 184 (510)
T ss_pred hhhHHHHHhhcCChhhhhHHHHHhhhhHHhhh-----------------------hhhhh---he---eecHHHHHHHHH
Confidence 997 8999999999998888777776552211 11111 12 133333333333
Q ss_pred HHHh---hhccc---cccccccchhHHHHHHHHHHHHHhh---cCCC-----Ce--e-----eeeccc-CCCCC---CCC
Q 007335 277 ARFI---GRRNK---KLFWLPAIAPLLSVILSTLIVYLTK---ADKH-----GV--K-----IVKHIK-GGLNP---SSA 331 (607)
Q Consensus 277 ~~~~---~~~~~---~~~~ip~~~~Li~iv~~t~i~~~~~---~~~~-----~v--~-----~vg~ip-~gl~~---p~l 331 (607)
.... +++.. +.....-.+.++++.+.=++++++- ...+ +. + +...-| -..|- +..
T Consensus 185 fsqy~~~~~~~~~~~~~~if~~f~vll~i~ivW~~~~iLT~tgay~~~~~~t~~~~RTD~~~vi~~apWi~vPyP~QwG~ 264 (510)
T KOG1292|consen 185 FSQYASLPKKGFGSRRIQIFSRFPVLLAIAIVWLYCFILTITGAYPYKPTTTQSSCRTDRNGVISSAPWIRVPYPFQWGP 264 (510)
T ss_pred HHHhhhcccccccccccchHhhccHHHHHHHHHHHHHHHHhccccCCCccccCCcccccHhhhhccCCceeecCCCccCC
Confidence 3222 11111 1101111123444444444444331 1111 00 0 011101 01121 122
Q ss_pred CcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----CCcCCchHHHHHHHHHHHHhhhccccccccchhhhHH
Q 007335 332 HQLQLTGPHLGQTAKIGLISAVVALTEAIAVGRSFASIK----GYHLDGNKEMVAMGFMNIVGSLTSCYVATGSFSRTAV 407 (607)
Q Consensus 332 p~~~~~~~~~~~~~~~~~~~aiv~~~e~i~~~~~~a~~~----~~~~d~nqEl~a~G~aNi~~s~fg~~p~t~s~srS~v 407 (607)
|.+ +....... ...++++++|+++.=.+.++.. .-+...||....+|++.+++|+||.-.++..+++...
T Consensus 265 P~f--~~~~~f~m----~aa~~va~iES~G~y~a~ar~~~a~ppP~~~inRgi~~eGig~lL~gl~G~gtG~Tt~~ENig 338 (510)
T KOG1292|consen 265 PTF--SAGLVFAM----MAASLVAMIESTGDYIACARLSSATPPPPSVLNRGIGWEGIGSLLAGLFGTGTGSTTSVENIG 338 (510)
T ss_pred Ccc--cHHHHHHH----HHHHHHHHHHhcchHHHHHHHhcCCCCChhhhhhhhhhhhHHHHHHHhhCCCccceeecccee
Confidence 332 22222222 3355677778765444444333 3345569999999999999999997766655554433
Q ss_pred -hhhcCCccchhhHHHHHHHHHHHHH--hHHHHhhchHHHHHHHHHHHhcccC
Q 007335 408 -NFSAGCQTVVSNIVMAITVLLSLEL--FTSLLYYTPIAILASIILSALPGLI 457 (607)
Q Consensus 408 -~~~~G~rT~la~iv~a~~~ll~ll~--l~~l~~~iP~~vLa~ili~~~~~li 457 (607)
..-+...||..--++|.++++.-.+ ++.+|+.||.++.||+.-. +++|+
T Consensus 339 ll~vTKVgSRrvvQ~aa~fmI~~~i~gKFgA~fAsIP~piv~~l~c~-~~~mv 390 (510)
T KOG1292|consen 339 LLGVTKVGSRRVVQIAAGFMIFFGIFGKFGAFFASIPDPIVGGLLCI-LFGMV 390 (510)
T ss_pred eEeeeeeeeeeehhhhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH-HHHHH
Confidence 3336666777777777777777666 8899999999999998643 34443
No 23
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=98.72 E-value=1.8e-08 Score=87.26 Aligned_cols=62 Identities=21% Similarity=0.289 Sum_probs=53.6
Q ss_pred CCCcEEEEEEccccEeEcchHHHHHHHHHHHHhhhhhhhhhcCCCCcEEEEEccCCCcccHHHHHHHHHHHhC
Q 007335 535 KTPGILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKN 607 (607)
Q Consensus 535 ~~~~i~i~r~~g~~L~F~n~~~~~~~i~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iD~sa~~~L~~l~~~ 607 (607)
+.|++.++|++|+ |+|+|+++|++++.+.+.+ +..+.+|+||+.|++||+||+.+|.+++++
T Consensus 5 ~~~~v~ii~~~G~-l~f~~~~~~~~~l~~~~~~----------~~~~~vilDls~v~~iDssgl~~L~~l~~~ 66 (100)
T cd06844 5 KVDDYWVVRLEGE-LDHHSVEQFKEELLHNITN----------VAGKTIVIDISALEFMDSSGTGVLLERSRL 66 (100)
T ss_pred EECCEEEEEEEEE-ecHhhHHHHHHHHHHHHHh----------CCCCEEEEECCCCcEEcHHHHHHHHHHHHH
Confidence 3578999999999 9999999999998764421 346899999999999999999999998763
No 24
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=98.59 E-value=6.5e-08 Score=84.57 Aligned_cols=60 Identities=23% Similarity=0.371 Sum_probs=52.8
Q ss_pred CCcEEEEEEccccEeEcchHHHHHHHHHHHHhhhhhhhhhcCCCCcEEEEEccCCCcccHHHHHHHHHHHh
Q 007335 536 TPGILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHK 606 (607)
Q Consensus 536 ~~~i~i~r~~g~~L~F~n~~~~~~~i~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iD~sa~~~L~~l~~ 606 (607)
.+++.+++++|+ |+|+|++.+++++.+.+++ ++.+.+++||+.|++||+||+.+|.++.+
T Consensus 6 ~~~~~vi~l~G~-L~f~~~~~~~~~l~~~~~~----------~~~~~vilDls~v~~iDssgi~~L~~~~~ 65 (106)
T TIGR02886 6 KGDVLIVRLSGE-LDHHTAERVRRKIDDAIER----------RPIKHLILNLKNVTFMDSSGLGVILGRYK 65 (106)
T ss_pred ECCEEEEEEecc-cchhhHHHHHHHHHHHHHh----------CCCCEEEEECCCCcEecchHHHHHHHHHH
Confidence 468999999999 9999999999999876531 24689999999999999999999998765
No 25
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=98.51 E-value=1.8e-07 Score=82.15 Aligned_cols=60 Identities=23% Similarity=0.325 Sum_probs=52.1
Q ss_pred CCcEEEEEEccccEeEcchHHHHHHHHHHHHhhhhhhhhhcCCCCcEEEEEccCCCcccHHHHHHHHHHHh
Q 007335 536 TPGILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHK 606 (607)
Q Consensus 536 ~~~i~i~r~~g~~L~F~n~~~~~~~i~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iD~sa~~~L~~l~~ 606 (607)
.+++.+++++|+ |+|+|++.+++++.+.+.+ .+.+.||+||+.|+++|+||+.+|.++.+
T Consensus 8 ~~~~~v~~l~G~-L~~~~a~~~~~~l~~~~~~----------~~~~~vvlDls~v~~iDssg~~~l~~~~~ 67 (109)
T cd07041 8 WDGVLVLPLIGD-LDDERAEQLQERLLEAISR----------RRARGVIIDLTGVPVIDSAVARHLLRLAR 67 (109)
T ss_pred eCCEEEEeeeee-ECHHHHHHHHHHHHHHHHH----------cCCCEEEEECCCCchhcHHHHHHHHHHHH
Confidence 358999999999 9999999999998664431 24679999999999999999999999876
No 26
>cd07042 STAS_SulP_like_sulfate_transporter Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function. The SulP family is a large and diverse family of anion transporters, with members from eubacteria, plants, fungi, and mammals. They contain 10 to 14 transmembrane helices which form the catalytic core of the protein and a C-terminal extension, the STAS (Sulphate Transporter and AntiSigma factor antagonist) domain which plays a role in the function and regulation of the transport activity. The STAS domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function.
Probab=98.29 E-value=2.3e-06 Score=74.31 Aligned_cols=62 Identities=37% Similarity=0.667 Sum_probs=52.1
Q ss_pred CCCcEEEEEEccccEeEcchHHHHHHHHHHHHhhhhhhhhhcCCCCcEEEEEccCCCcccHHHHHHHHHHHh
Q 007335 535 KTPGILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHK 606 (607)
Q Consensus 535 ~~~~i~i~r~~g~~L~F~n~~~~~~~i~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iD~sa~~~L~~l~~ 606 (607)
..+++.+++++|+ ++|+|++.+++.+.+..+. .+..+.+|+||+.++++|++|+.+|.++.+
T Consensus 6 ~~~~~~v~~l~G~-l~~~~~~~l~~~~~~~~~~---------~~~~~~lilD~~~v~~iDss~~~~L~~~~~ 67 (107)
T cd07042 6 EPPGVLIYRIDGP-LFFGNAEYFKDRLLRLVDE---------DPPLKVVILDLSAVNFIDSTAAEALEELVK 67 (107)
T ss_pred cCCCEEEEEecCc-eEeehHHHHHHHHHHHhcc---------CCCceEEEEECCCCchhhHHHHHHHHHHHH
Confidence 3468999999999 9999999999998764321 122578999999999999999999999875
No 27
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=97.98 E-value=1e-05 Score=70.76 Aligned_cols=60 Identities=20% Similarity=0.347 Sum_probs=52.4
Q ss_pred CCcEEEEEEccccEeEcchHHHHHHHHHHHHhhhhhhhhhcCCCCcEEEEEccCCCcccHHHHHHHHHHHh
Q 007335 536 TPGILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHK 606 (607)
Q Consensus 536 ~~~i~i~r~~g~~L~F~n~~~~~~~i~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iD~sa~~~L~~l~~ 606 (607)
.+++.+++++|+ ++|.|+..+++.+.+...+ ++.+.|++||+.+.++|++|+..|.++.+
T Consensus 10 ~~~~~vi~~~G~-l~~~~~~~~~~~l~~~~~~----------~~~~~vvidls~v~~iDssgl~~L~~~~~ 69 (108)
T TIGR00377 10 QEGVVIVRLSGE-LDAHTAPLLREKVTPAAER----------TGPRPIVLDLEDLEFMDSSGLGVLLGRYK 69 (108)
T ss_pred ECCEEEEEEecc-cccccHHHHHHHHHHHHHh----------cCCCeEEEECCCCeEEccccHHHHHHHHH
Confidence 468999999999 9999999999999775431 35788999999999999999999998864
No 28
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=97.96 E-value=1.7e-05 Score=67.80 Aligned_cols=59 Identities=27% Similarity=0.374 Sum_probs=50.8
Q ss_pred CCcEEEEEEccccEeEcchHHHHHHHHHHHHhhhhhhhhhcCCCCcEEEEEccCCCcccHHHHHHHHHHHh
Q 007335 536 TPGILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHK 606 (607)
Q Consensus 536 ~~~i~i~r~~g~~L~F~n~~~~~~~i~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iD~sa~~~L~~l~~ 606 (607)
.+++.+++++|+ ++|+|++.+.+.+.+..+ .+.+.+++|++.+.++|++|+.+|.++.+
T Consensus 6 ~~~~~ii~l~G~-l~~~~~~~~~~~~~~~~~-----------~~~~~viid~~~v~~iDs~g~~~L~~l~~ 64 (99)
T cd07043 6 RGGVLVVRLSGE-LDAATAPELREALEELLA-----------EGPRRLVLDLSGVTFIDSSGLGVLLGAYK 64 (99)
T ss_pred ECCEEEEEEece-ecccchHHHHHHHHHHHH-----------cCCCEEEEECCCCCEEcchhHHHHHHHHH
Confidence 357899999999 999999999998876432 12578999999999999999999999875
No 29
>PF11840 DUF3360: Protein of unknown function (DUF3360); InterPro: IPR021794 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 489 to 517 amino acids in length.
Probab=97.64 E-value=0.018 Score=59.87 Aligned_cols=275 Identities=16% Similarity=0.206 Sum_probs=142.7
Q ss_pred chhHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhhccHHHHHHHHHHHHHHHHHHhhh
Q 007335 151 GPVAVVSMLLSALMQNVQDPAADPVAYRKLVFTVTFFAGVFQSVFGLFRLG-FLVDFLSHAAIVGFMAGAAIVIGLQQLK 229 (607)
Q Consensus 151 Gp~a~~sll~~~~v~~~~~~~~~~~~~~~~a~~~t~l~Gi~~~llG~lrLg-~l~~flp~~vi~Gf~~gigl~i~~~ql~ 229 (607)
|.-+.+-.++..++..-+ +| .++.++.|++=++++++|.| ++++.-++-|-+|.+-=.|+.=..+|++
T Consensus 125 GthgPmIpLIp~ivaaGg----HP-------Lalgilvg~fGlil~~~kggS~L~~LTs~gv~ggLllylG~~G~~~qi~ 193 (492)
T PF11840_consen 125 GTHGPMIPLIPLIVAAGG----HP-------LALGILVGVFGLILSIFKGGSKLVNLTSHGVCGGLLLYLGFVGLIGQIK 193 (492)
T ss_pred CCCCCcchhhHHHHHcCC----Cc-------HHHHHHHHHHHHHHHHhcchhHHHhhhcCccccceeeeehhhhHHHHHH
Confidence 444445555555554433 23 35678899999999999976 5899999999999887777777788888
Q ss_pred hhhCccccCCCCcHHHHHHHHHhhcCcCCcchhHHHHHHHHHHHHHHHHHhhhccccccccccchhHHHHHHHHHHHHHh
Q 007335 230 GLLGISHFTNKTDVVSVLGSVFSSLHHSYWYPLNFVLGCSFLIFLLIARFIGRRNKKLFWLPAIAPLLSVILSTLIVYLT 309 (607)
Q Consensus 230 ~~lG~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~ip~~~~Li~iv~~t~i~~~~ 309 (607)
.++.... .+. ..+..+++-++++++ ..++.|..|++.-+| ++-+++.++++..
T Consensus 194 kl~~wa~----------------~~~---~~~i~fvvi~~tiv~---Ya~L~k~~KrWLaIP-----l~~~~a~~~a~~l 246 (492)
T PF11840_consen 194 KLFAWAN----------------GFD---MGYIAFVVIIVTIVL---YAYLAKIEKRWLAIP-----LCSILAGVLAFAL 246 (492)
T ss_pred HHHHHHh----------------ccC---ccHHHHHHHHHHHHH---HHHHHHhccchhhhh-----HHHHHHHHHHHHc
Confidence 7754321 111 223333322222222 223333333333233 2333444555555
Q ss_pred hcCCCCeeeeecccCCCCCCCCC-------cCCCCh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------hCCc
Q 007335 310 KADKHGVKIVKHIKGGLNPSSAH-------QLQLTG---PHLGQTAKIGLISAVVALTEAIAVGRSFASI------KGYH 373 (607)
Q Consensus 310 ~~~~~~v~~vg~ip~gl~~p~lp-------~~~~~~---~~~~~~~~~~~~~aiv~~~e~i~~~~~~a~~------~~~~ 373 (607)
+.. ++.. -+.|+|..+.- .+.+.. +.+...++.++.....=.-+.++ -+.|.+. ++..
T Consensus 247 Ga~---f~f~--t~pglp~lnP~YWWge~tGw~LglP~~~hfiav~PFAiLAVaMWSpDflg-hrvFqelnypk~~~kvl 320 (492)
T PF11840_consen 247 GAP---FEFT--TEPGLPNLNPMYWWGEETGWQLGLPTLEHFIAVLPFAILAVAMWSPDFLG-HRVFQELNYPKETKKVL 320 (492)
T ss_pred CCC---ceee--cCCCCCCCCCcccccCCcccccCCCcHHHHHHhccHHHHHHHHhCchHHH-HHHHHHhcCchhhccee
Confidence 432 1111 12233321100 011111 22333444332111010012222 2333221 2334
Q ss_pred CCchHHHHHHHHHHHHhhhccccccccchhhhHHhhhcCCccc--hhhHHHHHHHHHHHHHhHHHHhhchHHHHHHHHHH
Q 007335 374 LDGNKEMVAMGFMNIVGSLTSCYVATGSFSRTAVNFSAGCQTV--VSNIVMAITVLLSLELFTSLLYYTPIAILASIILS 451 (607)
Q Consensus 374 ~d~nqEl~a~G~aNi~~s~fg~~p~t~s~srS~v~~~~G~rT~--la~iv~a~~~ll~ll~l~~l~~~iP~~vLa~ili~ 451 (607)
.|.|+.+..-.+=|++|+.+||--.+.|...-.+ -.+=+|-+ -..+.+|++++++.+..-|.=-.+=.+++...+++
T Consensus 321 MnvDDTm~~~siRQ~vGs~lGGgN~~SsWgTymI-PaaIaKRPIpggAiLtg~~Ci~~av~GyPMdlavw~Pvl~vALlv 399 (492)
T PF11840_consen 321 MNVDDTMTMCSIRQIVGSILGGGNIASSWGTYMI-PAAIAKRPIPGGAILTGLLCIVAAVWGYPMDLAVWPPVLRVALLV 399 (492)
T ss_pred ecccchhHHHHHHHHHhhcccCCcccccchhhhh-hHHHhcCCCCchHHHHHHHHHHHHHhcCcchhhhcccHHHHHHHH
Confidence 6888999999999999999999887755443333 33334444 56788888888888776664222223445555555
Q ss_pred HhcccCCHHHHHHHhccCcc
Q 007335 452 ALPGLIDINEAINIYKVDKL 471 (607)
Q Consensus 452 ~~~~li~~~~~~~l~k~~~~ 471 (607)
-++-=+-...+ +.||-+|.
T Consensus 400 GVflPLleAGm-qm~r~~k~ 418 (492)
T PF11840_consen 400 GVFLPLLEAGM-QMTRKGKT 418 (492)
T ss_pred HHHHHHHHHHH-HHHhcCCc
Confidence 33321222222 45665554
No 30
>PF13466 STAS_2: STAS domain
Probab=96.88 E-value=0.0019 Score=53.18 Aligned_cols=52 Identities=21% Similarity=0.386 Sum_probs=45.1
Q ss_pred EEEccccEeEcchHHHHHHHHHHHHhhhhhhhhhcCCCCcEEEEEccCCCcccHHHHHHHHHHHh
Q 007335 542 IRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHK 606 (607)
Q Consensus 542 ~r~~g~~L~F~n~~~~~~~i~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iD~sa~~~L~~l~~ 606 (607)
+++.|. +.+.+++.+++.+.++.+ .+ +.|++|++.|.++|++|++.|.++.+
T Consensus 1 l~l~G~-l~~~~~~~l~~~l~~~~~-----------~~-~~v~lDls~v~~iDsagl~lL~~~~~ 52 (80)
T PF13466_consen 1 LRLSGE-LDIATAPELRQALQALLA-----------SG-RPVVLDLSGVEFIDSAGLQLLLAAAR 52 (80)
T ss_pred CEEEEE-EeHHHHHHHHHHHHHHHc-----------CC-CeEEEECCCCCeecHHHHHHHHHHHH
Confidence 478899 999999999999988652 22 68999999999999999999998775
No 31
>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]
Probab=96.66 E-value=0.0039 Score=55.45 Aligned_cols=56 Identities=23% Similarity=0.347 Sum_probs=48.6
Q ss_pred EEEEEccccEeEcchHHHHHHHHHHHHhhhhhhhhhcCCCCcEEEEEccCCCcccHHHHHHHHHHHh
Q 007335 540 LTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHK 606 (607)
Q Consensus 540 ~i~r~~g~~L~F~n~~~~~~~i~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iD~sa~~~L~~l~~ 606 (607)
.++++.|. |-..|+..++|.+.++... .+.+.+|+|++.|.++|++|+..|....+
T Consensus 15 ~vl~l~G~-lD~~~a~~~~e~~~~~~~~----------~~~~~ivIDls~v~~~dS~gl~~L~~~~~ 70 (117)
T COG1366 15 LVLPLIGE-LDAARAPALKETLLEVIAA----------SGARGLVIDLSGVDFMDSAGLGVLVALLK 70 (117)
T ss_pred EEEEeeEE-EchHHHHHHHHHHHHHHhc----------CCCcEEEEECCCCceechHHHHHHHHHHH
Confidence 79999999 9999999999999876543 34566999999999999999999988754
No 32
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=92.75 E-value=5.5 Score=45.42 Aligned_cols=109 Identities=13% Similarity=0.067 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCcCCchHHHHHHHHHHHHhhhccccccccchhhhHHh-------hhcCC
Q 007335 341 LGQTAKIGLISAVVALTEAIAVGRSFASIKGYHLDGNKEMVAMGFMNIVGSLTSCYVATGSFSRTAVN-------FSAGC 413 (607)
Q Consensus 341 ~~~~~~~~~~~aiv~~~e~i~~~~~~a~~~~~~~d~nqEl~a~G~aNi~~s~fg~~p~t~s~srS~v~-------~~~G~ 413 (607)
+..-+..++..+++.+-++++.+.. + ..++..-|++-.+..++.++||+.+-..+-.-++.. .+.|.
T Consensus 14 l~~Di~aGltv~~~~iP~~~ayA~l-a-----glpp~~GLysa~~~~iv~alfGss~~~i~Gp~a~~sl~~~~~v~~~~~ 87 (563)
T TIGR00815 14 FKGDLMAGLTVGILLIPQAMAYAIL-A-----GLSPIYGLYTSFVPPFIYALFGTSRDIAIGPVAVMSLLLGSVIARVGL 87 (563)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH-c-----CCCchhhhHHHHHHHHHhheecCCCcccCCHHHHHHHHHHHHHHHhcC
Confidence 4444556777888888888876643 2 356777799999999999999998755332222211 11222
Q ss_pred c-cc---------hhhHHHHHHHHHHHHH-hHHHHhhchHHHHHHHHHHHhcc
Q 007335 414 Q-TV---------VSNIVMAITVLLSLEL-FTSLLYYTPIAILASIILSALPG 455 (607)
Q Consensus 414 r-T~---------la~iv~a~~~ll~ll~-l~~l~~~iP~~vLa~ili~~~~~ 455 (607)
. .. ..++.+|++.++..++ ++.+..++|.+++.|.+--+++.
T Consensus 88 ~~~~~~~~~~~a~~l~~l~Gi~~~~~g~lrlG~l~~~is~~Vi~Gf~~g~a~~ 140 (563)
T TIGR00815 88 QYLFDCDAIRLAFTLTLLAGIFQVILGLLRLGFLIEFLSHAVISGFMTGAAIT 140 (563)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHHHHHHH
Confidence 2 21 5667777777777666 88999999999998876554444
No 33
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=88.28 E-value=9.3 Score=43.41 Aligned_cols=107 Identities=21% Similarity=0.139 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhCCcCCchHHHHHHHHHHHHhhhccccccccchhhhH--HhhhcCC----ccc-
Q 007335 344 TAKIGLISAVVALTEAIAVGRSFASIKGYHLDGNKEMVAMGFMNIVGSLTSCYVATGSFSRTA--VNFSAGC----QTV- 416 (607)
Q Consensus 344 ~~~~~~~~aiv~~~e~i~~~~~~a~~~~~~~d~nqEl~a~G~aNi~~s~fg~~p~t~s~srS~--v~~~~G~----rT~- 416 (607)
-+..++..+++.+=++++.++ ..| +++..-|++-=++-++-++|||.|.-.+-..++ +...+.. .+.
T Consensus 24 Dl~AGltva~valP~ama~a~----~aG--v~p~~GLyas~i~~~v~alfGgs~~~i~GPt~a~~~v~a~~i~~~~~~g~ 97 (554)
T COG0659 24 DLLAGLTVAAVALPLAMAFAI----AAG--VPPEAGLYASIVAGIIYALFGGSRGLISGPTGAFAVVLAAVIASLVETGL 97 (554)
T ss_pred HHHHHHHHHHHHhHHHHHHHH----HcC--CCHHHHHHHHHHHHHHHHHHcCCccceeccchhhHHHHHHHHHHHHHHHH
Confidence 444566677777777776655 233 899999999999999999999988653222211 1111111 222
Q ss_pred ----hhhHHHHHHHHHHHHH-hHHHHhhchHHHHHHHHHHHhccc
Q 007335 417 ----VSNIVMAITVLLSLEL-FTSLLYYTPIAILASIILSALPGL 456 (607)
Q Consensus 417 ----la~iv~a~~~ll~ll~-l~~l~~~iP~~vLa~ili~~~~~l 456 (607)
++.+.+|++.+++.++ ++.+..|+|.+|+.|.+--.++-+
T Consensus 98 ~~~~~~tllaGv~~i~~G~lRLG~li~fip~pVl~Gf~~Giai~I 142 (554)
T COG0659 98 ALAFLATLLAGVFQILLGLLRLGRLIRFIPRPVLIGFTAGIAILI 142 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHHHH
Confidence 3455566666665555 889999999999988765544443
No 34
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=88.18 E-value=15 Score=40.38 Aligned_cols=127 Identities=9% Similarity=-0.063 Sum_probs=79.0
Q ss_pred cCChhhhhhhHHHHHHHHHHHHhhHHHHHHhhCCCc------hhhHHHhhhhHHHHHHhcCCCccccchhHHHHHHHHHH
Q 007335 90 NYKASKFKSDLMAGLTLASLSIPQSIGYANLAKLDP------QYGLYTSVIPPLIYALMGSSREIAIGPVAVVSMLLSAL 163 (607)
Q Consensus 90 ~y~~~~l~~D~~aGltv~~~~iPq~~aya~laglpp------~~GLyss~i~~liy~lfGss~~~~~Gp~a~~sll~~~~ 163 (607)
++++.-+..=++..+....=.+-.-.|-+.+.+-++ .-|+..-.+.+++-++||+.+..+.+-...+.-+++
T Consensus 236 ~F~~~~il~~~~~~lv~~~e~iG~~~a~~~~~~~~~~~~~~l~rgi~~dGi~s~laglfg~~p~tt~sqNvGvi~~Tg-- 313 (433)
T PRK11412 236 ALEPGIILTAVITGLVNISNTYGAIRGTDVFYPQQGAGNTRYRRSFVATGFMTLITVPLAVIPFSPFVSSIGLLTQTG-- 313 (433)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccchhhccHHHHHHHhcCCCCCCchhhhhhhhhhcC--
Confidence 366544333333333333322333344444554322 368999999999999999877654432222111111
Q ss_pred HhhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhhhccHHHHHHHHHHHHHHHHHHhhhhhhC
Q 007335 164 MQNVQDPAADPVAYRKLVFTVTFFAGVFQSVFGLF-RLGFLVDFLSHAAIVGFMAGAAIVIGLQQLKGLLG 233 (607)
Q Consensus 164 v~~~~~~~~~~~~~~~~a~~~t~l~Gi~~~llG~l-rLg~l~~flp~~vi~Gf~~gigl~i~~~ql~~~lG 233 (607)
.. ---+...+|++.+++|++ |++.++.-+|.||++|.+.-.--.++..+++.+-+
T Consensus 314 ---V~------------SR~v~~~aa~ilillgl~PK~~alia~IP~pVlGg~~~~~Fg~I~~~Gi~~l~~ 369 (433)
T PRK11412 314 ---DY------------RRRSFIYGSVMCLLVALIPALTRLFCSIPLPVSSAVMLVSYLPLLGSALVFSQQ 369 (433)
T ss_pred ---Cc------------hhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00 013356688999999988 58999999999999998877777777777766543
No 35
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=86.61 E-value=21 Score=38.80 Aligned_cols=96 Identities=19% Similarity=0.218 Sum_probs=60.0
Q ss_pred HHHHHHHhhHHH----HHHhhCCCc-----hhhHHHhhhhHHHHHHhcCCCccccchhHHHHHHHHHHHhhhcCCCCChH
Q 007335 105 TLASLSIPQSIG----YANLAKLDP-----QYGLYTSVIPPLIYALMGSSREIAIGPVAVVSMLLSALMQNVQDPAADPV 175 (607)
Q Consensus 105 tv~~~~iPq~~a----ya~laglpp-----~~GLyss~i~~liy~lfGss~~~~~Gp~a~~sll~~~~v~~~~~~~~~~~ 175 (607)
+.+++..-++++ .+...|-++ .-++.+-.+++++-++||+.+.......+...... +..
T Consensus 226 ~~~lv~~~esig~~~a~~~~~g~~~~~~~~~~~l~~~Gi~~i~aglfG~~p~t~~~~~~~~~~~t-----g~~------- 293 (406)
T TIGR03173 226 IVYLVSMVETTGDFLALGEITGRPITEKDLAGGLRADGLGSALGGLFNTFPYTSFSQNVGLVQLT-----GVK------- 293 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCchhccchHHhccHHHHHHHHhCCCCCcchhhhHHHHHHh-----CCC-------
Confidence 444444444443 444555332 37899999999999999987644332211111111 100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh-hhhhhhhhccHHHHHHHHH
Q 007335 176 AYRKLVFTVTFFAGVFQSVFGLF-RLGFLVDFLSHAAIVGFMA 217 (607)
Q Consensus 176 ~~~~~a~~~t~l~Gi~~~llG~l-rLg~l~~flp~~vi~Gf~~ 217 (607)
. + ....++|++.+++|++ +++.+..++|.||+.|.+.
T Consensus 294 s--r---~~~~~~~~~lil~~l~~~~~~l~~~iP~~vlgg~~l 331 (406)
T TIGR03173 294 S--R---YVVAAAGVILVLLGLFPKLAALVASIPQPVLGGAGL 331 (406)
T ss_pred c--h---HhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 0 1 2236688888888887 5889999999999999554
No 36
>PRK11660 putative transporter; Provisional
Probab=83.67 E-value=65 Score=36.78 Aligned_cols=115 Identities=12% Similarity=0.108 Sum_probs=68.8
Q ss_pred ChhhhhhhHHHHHHHHHHHHhhHHH----HHHhhC--CCchhhHHHhhhhHHHHHHhcCCCccccchhHHHHHHHHHHHh
Q 007335 92 KASKFKSDLMAGLTLASLSIPQSIG----YANLAK--LDPQYGLYTSVIPPLIYALMGSSREIAIGPVAVVSMLLSALMQ 165 (607)
Q Consensus 92 ~~~~l~~D~~aGltv~~~~iPq~~a----ya~lag--lpp~~GLyss~i~~liy~lfGss~~~~~Gp~a~~sll~~~~v~ 165 (607)
+++.+..-+...++++++..=+++. ++...+ .++--=|.+-.+++++-++||+.+.... +..+.+.
T Consensus 274 ~~~~~~~ll~~a~~iaiv~~iesl~~~~~~~~~~~~~~d~n~EL~a~G~aNi~~~~fgg~p~~~s--------~srSa~n 345 (568)
T PRK11660 274 SWDLIRALLPAAFSMAMLGAIESLLCAVVLDGMTGTKHSANSELVGQGLGNIVAPFFGGITATAA--------IARSAAN 345 (568)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHhHHHHHHHHhCcccccch--------HHHHHHH
Confidence 5566665566677777766655553 333333 5566778889999999999999653211 1111222
Q ss_pred hhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHHHH
Q 007335 166 NVQDPAADPVAYRKLVFTVTFFAGVFQSVFGLFRLGFLVDFLSHAAIVGFMAGAAIVIG 224 (607)
Q Consensus 166 ~~~~~~~~~~~~~~~a~~~t~l~Gi~~~llG~lrLg~l~~flp~~vi~Gf~~gigl~i~ 224 (607)
...+ .. . -..++++|++.++.- +-++.+..++|.+++.|.+.-+|+.++
T Consensus 346 ~~aG-ar-----T---~la~iv~a~~~ll~l-l~l~~ll~~iP~~vLa~ili~~~~~m~ 394 (568)
T PRK11660 346 VRAG-AT-----S---PISAVIHALLVLLAL-LVLAPLLSYLPLSAMAALLLMVAWNMS 394 (568)
T ss_pred HhcC-CC-----c---HHHHHHHHHHHHHHH-HHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence 1111 00 0 133445555433332 235679999999999999988887754
No 37
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=81.89 E-value=9.2 Score=41.82 Aligned_cols=111 Identities=20% Similarity=0.262 Sum_probs=70.5
Q ss_pred HHHHHHHHhhHH----HHHHhhCCC----c--hhhHHHhhhhHHHHHHhcCCCccccchhHHHHHHHHHHHhhhcCCCCC
Q 007335 104 LTLASLSIPQSI----GYANLAKLD----P--QYGLYTSVIPPLIYALMGSSREIAIGPVAVVSMLLSALMQNVQDPAAD 173 (607)
Q Consensus 104 ltv~~~~iPq~~----aya~laglp----p--~~GLyss~i~~liy~lfGss~~~~~Gp~a~~sll~~~~v~~~~~~~~~ 173 (607)
+..+++.+-+++ +.+..+|-+ + .-++.+-.+++++-++||+.+.-.......+ +...+
T Consensus 240 ~~i~lv~~~es~g~~~a~a~~~g~~~~~~~~~~r~l~adGl~~i~aglfG~~p~t~~sen~g~-------~~~T~----- 307 (415)
T TIGR00801 240 LPVAIVSLVESIGDITATADVSGRDLSGDPRLHRGVLADGLATLLAGLFGGFPNTTFAQNIGV-------IALTR----- 307 (415)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhCCCCCCCccccchHHHhhHHHHHHHhcCCCCCcchhhhhee-------eeecC-----
Confidence 445555554444 445566653 2 3789999999999999998765543221111 00000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhhhccHHHHHHHHHHHHHHHHHHhhhhh
Q 007335 174 PVAYRKLVFTVTFFAGVFQSVFGLF-RLGFLVDFLSHAAIVGFMAGAAIVIGLQQLKGL 231 (607)
Q Consensus 174 ~~~~~~~a~~~t~l~Gi~~~llG~l-rLg~l~~flp~~vi~Gf~~gigl~i~~~ql~~~ 231 (607)
-.. + .+...+|++.+++|++ +++.++..+|.||+.|.....--.+..+.++.+
T Consensus 308 ~~s--r---~~~~~~a~~~i~~~l~pk~~~l~~~iP~~vlgg~~l~~~~~i~~~gi~~l 361 (415)
T TIGR00801 308 VAS--R---WVIVGAAVILIALGFFPKIAALITSIPSPVLGGASIVMFGMIAASGIRIL 361 (415)
T ss_pred CCc--h---HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 1 2456788888888888 689999999999999877755555555555544
No 38
>PRK10720 uracil transporter; Provisional
Probab=77.64 E-value=21 Score=39.17 Aligned_cols=111 Identities=18% Similarity=0.205 Sum_probs=71.5
Q ss_pred HHHHHHHHhhHHHHHH----hhCCC------chhhHHHhhhhHHHHHHhcCCCccccchhHHHHHHHHHHHhhhcCCCCC
Q 007335 104 LTLASLSIPQSIGYAN----LAKLD------PQYGLYTSVIPPLIYALMGSSREIAIGPVAVVSMLLSALMQNVQDPAAD 173 (607)
Q Consensus 104 ltv~~~~iPq~~aya~----laglp------p~~GLyss~i~~liy~lfGss~~~~~Gp~a~~sll~~~~v~~~~~~~~~ 173 (607)
+..+++...++++-.. ..+-+ ..-++.+-.+++++-++||+++....+-.... ++.
T Consensus 231 ~~~~lv~~~EsiG~~~a~~~~~~~~~~~~~~~~r~l~adGlatii~glfG~~p~tty~en~g~-------ia~------- 296 (428)
T PRK10720 231 LPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYGENIGV-------MAI------- 296 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccchHhhhhHHHHHHHhcCCCCccccccccce-------eee-------
Confidence 4444555566665322 23322 24789999999999999999765442111000 000
Q ss_pred hHHHHHHHH-HHHHHHHHHHHHHHHh-hhhhhhhhccHHHHHHHHHHHHHHHHHHhhhhhh
Q 007335 174 PVAYRKLVF-TVTFFAGVFQSVFGLF-RLGFLVDFLSHAAIVGFMAGAAIVIGLQQLKGLL 232 (607)
Q Consensus 174 ~~~~~~~a~-~~t~l~Gi~~~llG~l-rLg~l~~flp~~vi~Gf~~gigl~i~~~ql~~~l 232 (607)
.+++. .+...+|++.+++|++ |++.++..+|.||+.|.....--.+..+.++.+.
T Consensus 297 ----T~v~sr~v~~~a~~~li~lg~~pk~~a~ia~iP~pVlgg~~i~~fg~i~~~Gi~~l~ 353 (428)
T PRK10720 297 ----TRVYSTWVIGGAAIIAILLSCVGKLAAAIQAIPLPVMGGVSLLLYGVIGASGIRVLI 353 (428)
T ss_pred ----cccchhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01222 2234478888999987 5899999999999999988777777777777664
No 39
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=73.77 E-value=13 Score=40.85 Aligned_cols=67 Identities=13% Similarity=0.122 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh----hCCcCCchHHHHHHHHHHHHhhh--------ccccccccchhhhHHhhh
Q 007335 344 TAKIGLISAVVALTEAIAVGRSFASI----KGYHLDGNKEMVAMGFMNIVGSL--------TSCYVATGSFSRTAVNFS 410 (607)
Q Consensus 344 ~~~~~~~~aiv~~~e~i~~~~~~a~~----~~~~~d~nqEl~a~G~aNi~~s~--------fg~~p~t~s~srS~v~~~ 410 (607)
+++++++..+....+..++++...++ .+.+-...-|=++.=++-+++++ .|-...|+.+||-.....
T Consensus 250 m~~v~iV~~~E~~G~i~A~~~itg~~~~~~~~l~rg~~aDGlat~iag~fg~~p~TtfaqNiGvv~lT~v~Sr~V~~~a 328 (451)
T COG2233 250 MLPVAIVTIVEHTGDITATGEITGRDLDGKPRLRRGLLADGLATLIAGLFGGFPNTTFAQNIGVVALTGVYSRYVIAGA 328 (451)
T ss_pred HHHHHHHHHHHHhhhhhhHHhHhCCcCccCcccccceeeccHHHHHHHhcCCCCCCchhhceeeeeeccCChhHHHHHH
Confidence 45556666677777777776655433 44454445555666666666665 234556777777766554
No 40
>TIGR03616 RutG pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).
Probab=66.06 E-value=33 Score=37.65 Aligned_cols=86 Identities=15% Similarity=0.151 Sum_probs=59.2
Q ss_pred hhhHHHhhhhHHHHHHhcCCCccccchhHHHHHHHHHHHhhhcCCCCChHHHHHHH-HHHHHHHHHHHHHHHHhh-hhhh
Q 007335 126 QYGLYTSVIPPLIYALMGSSREIAIGPVAVVSMLLSALMQNVQDPAADPVAYRKLV-FTVTFFAGVFQSVFGLFR-LGFL 203 (607)
Q Consensus 126 ~~GLyss~i~~liy~lfGss~~~~~Gp~a~~sll~~~~v~~~~~~~~~~~~~~~~a-~~~t~l~Gi~~~llG~lr-Lg~l 203 (607)
.-|+.+-.+++++-++||+++....+-.....-+ + +++ -.+...+|++.+++|++. ++.+
T Consensus 283 ~r~l~adGl~t~~agl~g~~p~tt~~en~g~i~~------T------------~v~SR~v~~~a~~~lillgl~Pk~~al 344 (429)
T TIGR03616 283 GRAFVGDGLATMLSGSVGGTGVTTYAENIGVMAV------T------------KVYSTLVFVAAAVFAILLGFSPKFGAL 344 (429)
T ss_pred ccchhhhhHHHHHHHhcCCCCCcceeeeeeeeee------c------------CcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999998765543211110000 0 011 133455788888899884 8999
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHhhh
Q 007335 204 VDFLSHAAIVGFMAGAAIVIGLQQLK 229 (607)
Q Consensus 204 ~~flp~~vi~Gf~~gigl~i~~~ql~ 229 (607)
+..+|.||+.|.+.-.--.+..+.++
T Consensus 345 ~~~IP~pVlgG~~i~~fg~i~~~Gi~ 370 (429)
T TIGR03616 345 IHTIPVAVLGGASIVVFGLIAVAGAR 370 (429)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988666667766666
No 41
>COG0573 PstC ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]
Probab=63.39 E-value=2e+02 Score=30.17 Aligned_cols=42 Identities=26% Similarity=0.474 Sum_probs=28.8
Q ss_pred cccccc-----cCCh-hhhhhhHHHHHHHHHHHHhhHHHHHH-hhC-CCc
Q 007335 84 ILNWGR-----NYKA-SKFKSDLMAGLTLASLSIPQSIGYAN-LAK-LDP 125 (607)
Q Consensus 84 i~~wl~-----~y~~-~~l~~D~~aGltv~~~~iPq~~aya~-lag-lpp 125 (607)
-.+|=| +|.. .-+.+-++.-+...++++|.|++.|. ++- .+|
T Consensus 63 ~~~W~p~~~~~~~G~l~~i~GTli~s~iA~liAvP~gi~~Aifl~E~~~p 112 (310)
T COG0573 63 GTEWNPTNAQPQYGALPPIAGTLITSLIALLIAVPVGIGTAIFLSEYAPP 112 (310)
T ss_pred cCccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCc
Confidence 345666 3554 45567777777777899999999997 443 444
No 42
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=60.59 E-value=86 Score=33.87 Aligned_cols=116 Identities=22% Similarity=0.254 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHHHhhHHH----HHHhhCCCc------hhhHHHhhhhHHHHHHhcCCCccccchhHHHHHHHHHHHhhhc
Q 007335 99 DLMAGLTLASLSIPQSIG----YANLAKLDP------QYGLYTSVIPPLIYALMGSSREIAIGPVAVVSMLLSALMQNVQ 168 (607)
Q Consensus 99 D~~aGltv~~~~iPq~~a----ya~laglpp------~~GLyss~i~~liy~lfGss~~~~~Gp~a~~sll~~~~v~~~~ 168 (607)
-++.-++..++.+-.+++ .+..++.++ .-|+.+-.+++++-++||+++..+....+...-. .+..
T Consensus 233 ~i~~~~~~~lv~~~es~G~~~a~~~~~~~~~~~~~~~~r~l~~dg~~~~l~gl~G~~~~t~~~en~g~i~~-----t~v~ 307 (389)
T PF00860_consen 233 AILTFLIFALVAMFESIGTIVAVARIAGKDDPRPPRIRRGLLADGLGTILAGLFGTSPTTTYSENAGGIAA-----TGVA 307 (389)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHTS-TCCCCCHHHHHHHHHHHHHHHHHHT---EEE-HHHHHHHHH-----HTB-
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhCCCCccchhhcccceeeeeeeeechhhcCCCCccccccchhhhh-----hccc
Confidence 344444555555555544 344555432 3689999999999999999766544322221111 0100
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhhhccHHHHHHHHHHHHHHHHHHhhhhh
Q 007335 169 DPAADPVAYRKLVFTVTFFAGVFQSVFGLF-RLGFLVDFLSHAAIVGFMAGAAIVIGLQQLKGL 231 (607)
Q Consensus 169 ~~~~~~~~~~~~a~~~t~l~Gi~~~llG~l-rLg~l~~flp~~vi~Gf~~gigl~i~~~ql~~~ 231 (607)
.--..+.+|++.++++++ +++.+..-+|.||+.|...-.--.++.++++.+
T Consensus 308 ------------Sr~~~~~a~~~~i~~~~~p~~~~l~~~IP~~v~gg~~lv~~g~i~~~gi~~i 359 (389)
T PF00860_consen 308 ------------SRRVGLTAGVILILFGLSPKFAPLFASIPSPVIGGPLLVLFGMIMMSGIRNI 359 (389)
T ss_dssp -------------HHHHHHHHHHHHHHT--HHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------cceeeeHHHHHHHHHhhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhHhh
Confidence 012345577777788876 578999999999998887665556666666654
No 43
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=51.25 E-value=3.6e+02 Score=29.36 Aligned_cols=105 Identities=19% Similarity=0.132 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhCCcCCchH-------HHHHHHHHHHHhhhccccccccchhhh--HHhhhcCC
Q 007335 343 QTAKIGLISAVVALTEAIAVGRSFASIKGYHLDGNK-------EMVAMGFMNIVGSLTSCYVATGSFSRT--AVNFSAGC 413 (607)
Q Consensus 343 ~~~~~~~~~aiv~~~e~i~~~~~~a~~~~~~~d~nq-------El~a~G~aNi~~s~fg~~p~t~s~srS--~v~~~~G~ 413 (607)
..+..+++..++++..+.++.-.-++.-| .|++| -.++.|++.++=|..-=+|...+.|-- +.....-.
T Consensus 22 s~~~aG~va~lvg~~~~~~iv~~a~~~~g--~s~aq~~swl~a~~~~~Gl~ti~lS~~~r~Pi~~awStPGaAll~~~~~ 99 (395)
T TIGR00843 22 PTLIAGFLAVLIGYAGPAAIFFQAAIKAG--ASTAMIIGWITAIGIAAAVSGIFLSIRFKTPVLTAWSAPGAALLVTGFP 99 (395)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecCchHHHHHHHhcC
Confidence 34556677788888887766544444333 44444 457788888888888888988777722 12211111
Q ss_pred ccch-----hhHHHHHHHHHHHH--HhHHHHhhchHHHHHHHH
Q 007335 414 QTVV-----SNIVMAITVLLSLE--LFTSLLYYTPIAILASII 449 (607)
Q Consensus 414 rT~l-----a~iv~a~~~ll~ll--~l~~l~~~iP~~vLa~il 449 (607)
.-.+ +.+++|+++++.-+ .+..+.+.||.++.++++
T Consensus 100 ~~~~~eavGAfiv~g~lilllGltG~f~rl~~~IP~~Va~amL 142 (395)
T TIGR00843 100 GISLNEAIAAFITAAALIFLCGITGLFAKLLKIIPHGIAAAML 142 (395)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 1223 34455555444333 366788999999999988
No 44
>COG3113 Predicted NTP binding protein (contains STAS domain) [General function prediction only]
Probab=48.12 E-value=23 Score=30.32 Aligned_cols=29 Identities=28% Similarity=0.535 Sum_probs=25.3
Q ss_pred CCCcEEEEEccCCCcccHHHHHHHHHHHh
Q 007335 578 RTIQAVIIDMSNSMNIDTSGILVLEELHK 606 (607)
Q Consensus 578 ~~~~~vIlD~s~v~~iD~sa~~~L~~l~~ 606 (607)
++...+=+|++.|..+|++|...|.++.+
T Consensus 37 ~~~~~~~idLs~v~rvDSaglALL~~~~~ 65 (99)
T COG3113 37 KQLDTVRIDLSGVSRVDSAGLALLLHLIR 65 (99)
T ss_pred cccCeEEEehhhcceechHHHHHHHHHHH
Confidence 34478999999999999999999998865
No 45
>PF00916 Sulfate_transp: Sulfate transporter family; InterPro: IPR011547 A number of proteins involved in the transport of sulphate across a membrane as well as some yet uncharacterised proteins have been shown [, ] to be evolutionary related. These proteins are: Neurospora crassa sulphate permease II (gene cys-14). Yeast sulphate permeases (genes SUL1 and SUL2). Rat sulphate anion transporter 1 (SAT-1). Mammalian DTDST, a probable sulphate transporter which, in human, is involved in the genetic disease, diastrophic dysplasia (DTD). Sulphate transporters 1, 2 and 3 from the legume Stylosanthes hamata. Human pendrin (gene PDS), which is involved in a number of hearing loss genetic diseases. Human protein DRA (Down-Regulated in Adenoma). Soybean early nodulin 70. Escherichia coli hypothetical protein ychM. Caenorhabditis elegans hypothetical protein F41D9.5. These proteins are highly hydrophobic and seem to contain about 12 transmembrane domains.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=48.08 E-value=1.4e+02 Score=30.29 Aligned_cols=201 Identities=14% Similarity=0.095 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHH-HHhhhccccccccccchhHHHHHHHHHHHHHh-hcCCCCeeeeecccC-CCCCCCCCcCCCChhHH
Q 007335 265 VLGCSFLIFLLIA-RFIGRRNKKLFWLPAIAPLLSVILSTLIVYLT-KADKHGVKIVKHIKG-GLNPSSAHQLQLTGPHL 341 (607)
Q Consensus 265 ~ig~~~l~~ll~~-~~~~~~~~~~~~ip~~~~Li~iv~~t~i~~~~-~~~~~~v~~vg~ip~-gl~~p~lp~~~~~~~~~ 341 (607)
+..++.+.+.... ++..+|+.+..+.+....+++.++......-. +.+..+ ++...+|. .+|... .+++...+.+
T Consensus 73 ~~~l~~l~~~~~~~~~~~~~~~~~~p~~li~vv~~~~~~~~~~~~~~~v~~~~-~i~~~lp~~~~p~~~-~~~~~~~~~~ 150 (280)
T PF00916_consen 73 LVALVFLLIIRLLPKRLPSRFWPPIPAPLIVVVLGTLLSWLFLLDKYGVAIVG-EIPSGLPPPSLPSFD-ISWSLILDLL 150 (280)
T ss_pred hHHHHHHhhhhhhhhhccccccccccccceeeehhhhhhhhhhhccccccccc-cccccCccccCcccc-cccccccccc
Confidence 3344444443322 34445554444455545555555554444322 111111 11122433 455212 2233334456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCcCCchHHHHHHHHHHHHhhhccccccccchhhhHHhhhcCCccchhhHH
Q 007335 342 GQTAKIGLISAVVALTEAIAVGRSFASIKGYHLDGNKEMVAMGFMNIVGSLTSCYVATGSFSRTAVNFSAGCQTVVSNIV 421 (607)
Q Consensus 342 ~~~~~~~~~~aiv~~~e~i~~~~~~a~~~~~~~d~nqEl~a~G~aNi~~s~fg~~p~t~s~srS~v~~~~G~rT~la~iv 421 (607)
..++.++++..+.++...-+.++....+.+.+-+.--.=.+-=++.++||+-+|...+-+..+-..+.++..-+-+++++
T Consensus 151 ~~a~~ia~v~~~~s~~~~~~~~~~~~~~~d~n~El~a~G~aNi~s~~~gg~p~~~s~srs~~~~~~Ga~t~~s~~~~~~~ 230 (280)
T PF00916_consen 151 PTALAIAIVGFIESLLIAKSIAKKTGYRIDPNQELIALGLANIVSGLFGGMPGSGSFSRSAVNYRAGARTRLSGLISALF 230 (280)
T ss_pred hhHHHHHHHHHHHHHHhhhhhcccccccCCcHHHHHHhhhccccchhhcccccccccccchHHHhcCcceeehhHHHHHH
Confidence 77788888777878777777777777777777777766677788899999988888888888888888988888899998
Q ss_pred HHHHHHHHHHHhHHHHhhchHHHHHHHHHHHhcccCCHHHHHHHhcc
Q 007335 422 MAITVLLSLELFTSLLYYTPIAILASIILSALPGLIDINEAINIYKV 468 (607)
Q Consensus 422 ~a~~~ll~ll~l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l~k~ 468 (607)
..++++...-++..+=..+=-+++-.+.+- .++.-+.+.+++.-|.
T Consensus 231 ~l~~l~~~~~~l~~iP~~~La~ili~~~~~-l~~~~~~~~~~~~~~~ 276 (280)
T PF00916_consen 231 VLLVLLFLAPLLAYIPKAVLAAILIVVGIS-LIDWSSLRRLWRVSKA 276 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCHHHHHHHhcCChh
Confidence 888777665554433222223333333332 4444334444444443
No 46
>PHA00736 hypothetical protein
Probab=44.93 E-value=1.4e+02 Score=23.52 Aligned_cols=68 Identities=16% Similarity=0.331 Sum_probs=46.0
Q ss_pred HHHHHHhhCCCchhhHHH-hhhhHHHHHHhcCCCccccchhHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHHH
Q 007335 114 SIGYANLAKLDPQYGLYT-SVIPPLIYALMGSSREIAIGPVAVVSMLLSALMQNVQDPAADPVAYRKLVFTVTFFAGVF 191 (607)
Q Consensus 114 ~~aya~laglpp~~GLys-s~i~~liy~lfGss~~~~~Gp~a~~sll~~~~v~~~~~~~~~~~~~~~~a~~~t~l~Gi~ 191 (607)
+++.|+-.|+.|+.+..- -..-++.|-.-|..+.+.+|-.+...++.-..+. .+|..+....+++|.+
T Consensus 4 aislal~tglgpvi~viiil~mmgltykmagkipaii~giastf~lmfmdflp----------lfwgi~vifgliag~v 72 (79)
T PHA00736 4 AISLALQTGLGPVIAIIIILAMMGLTYKMAGKIPAILVGIASTFTLMFMDFLP----------LFWGITVIFGLIAGLV 72 (79)
T ss_pred HHHHHHHcCCccHHHHHHHHHHHhhHHHHhCCccHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHh
Confidence 567777889999877542 3345677888888888888887777777554432 2455555556666654
No 47
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=39.98 E-value=1.8e+02 Score=31.70 Aligned_cols=40 Identities=15% Similarity=0.410 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHh---hhhhhhh-hccHHHHHHHHHHHHHHHH
Q 007335 185 TFFAGVFQSVFGLF---RLGFLVD-FLSHAAIVGFMAGAAIVIG 224 (607)
Q Consensus 185 t~l~Gi~~~llG~l---rLg~l~~-flp~~vi~Gf~~gigl~i~ 224 (607)
|+...++.+++|.+ |..++-| ++|.||+.|++.++.+.+.
T Consensus 8 t~~la~~lLllG~~Lr~kv~~Lqk~~IPapViGGll~al~l~l~ 51 (398)
T TIGR00210 8 TLVVAILVLLLGRYLVKKIKFLKSFNIPEPVVGGVLVALALLLI 51 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence 34444555566644 3555655 8999999999998777665
No 48
>COG1296 AzlC Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]
Probab=38.29 E-value=4.3e+02 Score=26.59 Aligned_cols=50 Identities=28% Similarity=0.474 Sum_probs=35.6
Q ss_pred hhhhhhHHHHHHHHHHHHhhHHHHHHhh---CCCchhhHHHhhhhHHHHHHhcCCCcc
Q 007335 94 SKFKSDLMAGLTLASLSIPQSIGYANLA---KLDPQYGLYTSVIPPLIYALMGSSREI 148 (607)
Q Consensus 94 ~~l~~D~~aGltv~~~~iPq~~aya~la---glpp~~GLyss~i~~liy~lfGss~~~ 148 (607)
+.++..+.+++-+.+-.+|-|++|+.++ |+++. ++.+...++|+ |+|..+
T Consensus 10 ~~f~~G~~~~~Pi~lg~ip~Gl~fG~~a~~~G~s~~---e~~lmS~~iyA--GasQfv 62 (238)
T COG1296 10 AEFRQGLKASLPILLGYLPIGLAFGLLAVALGFSPL---EAILMSLLIYA--GASQFV 62 (238)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHcCCcHH---HHHHHHHHHHc--cHHHHH
Confidence 5677888888888899999999999987 67764 34444455554 454433
No 49
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=34.88 E-value=4.8e+02 Score=26.70 Aligned_cols=28 Identities=7% Similarity=0.197 Sum_probs=21.8
Q ss_pred HHhhhhhhhhhccHHHHHHHHHHHHHHH
Q 007335 196 GLFRLGFLVDFLSHAAIVGFMAGAAIVI 223 (607)
Q Consensus 196 G~lrLg~l~~flp~~vi~Gf~~gigl~i 223 (607)
|---...+++.+|+-+..|+..+.|+.=
T Consensus 162 G~~~v~~il~~iP~~v~~Gl~vaggmLP 189 (265)
T TIGR00822 162 SQSAVQAMLKAIPEVVTHGLQIAGGIIV 189 (265)
T ss_pred CHHHHHHHHHHCHHHHHHHHHHHHhhHH
Confidence 3334567899999999999988877763
No 50
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=32.07 E-value=92 Score=30.22 Aligned_cols=57 Identities=16% Similarity=0.101 Sum_probs=42.9
Q ss_pred hhchHHHHHHHHHHHhcccC-CHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHH
Q 007335 438 YYTPIAILASIILSALPGLI-DINEAINIYKVDKLDFLACIGAFLGVLFASVEIGLLA 494 (607)
Q Consensus 438 ~~iP~~vLa~ili~~~~~li-~~~~~~~l~k~~~~d~~v~~~tf~~~~~~~~~~Gi~~ 494 (607)
..+...+|-.++..+|+++= |...++++++.++.-..+-+.+.++++..+...+...
T Consensus 23 ~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSllgg~l~~~ll 80 (191)
T PF03956_consen 23 DKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGSLLGGLLASLLL 80 (191)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667788889999999985 6677888999998888777777777766555544444
No 51
>KOG1292 consensus Xanthine/uracil transporters [Nucleotide transport and metabolism]
Probab=28.82 E-value=2.4e+02 Score=31.36 Aligned_cols=76 Identities=20% Similarity=0.267 Sum_probs=45.9
Q ss_pred hhHHHhhhhHHHHHHhcCCCccccchhHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhh
Q 007335 127 YGLYTSVIPPLIYALMGSSREIAIGPVAVVSMLLSALMQNVQDPAADPVAYRKLVFTVTFFAGVFQSVFGLF-RLGFLVD 205 (607)
Q Consensus 127 ~GLyss~i~~liy~lfGss~~~~~Gp~a~~sll~~~~v~~~~~~~~~~~~~~~~a~~~t~l~Gi~~~llG~l-rLg~l~~ 205 (607)
-|...=.+++++-++||+......-...+-- + .+.+.++ + -+.=++|.+++++|++ |+|-+..
T Consensus 309 Rgi~~eGig~lL~gl~G~gtG~Tt~~ENigl-l---~vTKVgS-------R-----rvvQ~aa~fmI~~~i~gKFgA~fA 372 (510)
T KOG1292|consen 309 RGIGWEGIGSLLAGLFGTGTGSTTSVENIGL-L---GVTKVGS-------R-----RVVQIAAGFMIFFGIFGKFGAFFA 372 (510)
T ss_pred hhhhhhhHHHHHHHhhCCCccceeeccceee-E---eeeeeee-------e-----eehhhhHHHHHHHHHHHHHHHHHH
Confidence 4666677899999999986544321110000 0 0001110 0 1122467888888888 4899999
Q ss_pred hccHHHHHHHHHH
Q 007335 206 FLSHAAIVGFMAG 218 (607)
Q Consensus 206 flp~~vi~Gf~~g 218 (607)
-||+|++.|..+-
T Consensus 373 sIP~piv~~l~c~ 385 (510)
T KOG1292|consen 373 SIPDPIVGGLLCI 385 (510)
T ss_pred cCcHHHHHHHHHH
Confidence 9999999986653
No 52
>KOG0236 consensus Sulfate/bicarbonate/oxalate exchanger SAT-1 and related transporters (SLC26 family) [Inorganic ion transport and metabolism]
Probab=28.23 E-value=1e+03 Score=27.85 Aligned_cols=119 Identities=13% Similarity=0.190 Sum_probs=65.8
Q ss_pred cccccCCh--hhhhhh-HHHHHHHHHHHHhhHHHHHHh-h-----CCCchhhHHHhhhhHHHHHHhcCCCccccchhHHH
Q 007335 86 NWGRNYKA--SKFKSD-LMAGLTLASLSIPQSIGYANL-A-----KLDPQYGLYTSVIPPLIYALMGSSREIAIGPVAVV 156 (607)
Q Consensus 86 ~wl~~y~~--~~l~~D-~~aGltv~~~~iPq~~aya~l-a-----glpp~~GLyss~i~~liy~lfGss~~~~~Gp~a~~ 156 (607)
+|+|.+++ -.+..+ ...++.++++++=..++-+.. | .+++--=|++-.+..++-++|+.-+. .|..+
T Consensus 313 ~g~~~~~lp~~~~~~~~~~~~~~i~iva~~~~iai~k~fa~~~~y~vd~nqELiAlG~~Ni~sSff~~~p~--tgs~s-- 388 (665)
T KOG0236|consen 313 RGFPPPSLPPLSLTPQVIPDAFAIAIVALLEHIAIGKSFASLHGYKVDSNQELIALGISNILSSFFGCYPT--TGSFS-- 388 (665)
T ss_pred CCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCeeCCChHHHHHHHHHHhhhhhceEcc--cchhh--
Confidence 45555554 222233 233666666666666666553 2 26666678888889999999887432 12222
Q ss_pred HHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHH
Q 007335 157 SMLLSALMQNVQDPAADPVAYRKLVFTVTFFAGVFQSVFGLFRLGFLVDFLSHAAIVGFMAGAAIV 222 (607)
Q Consensus 157 sll~~~~v~~~~~~~~~~~~~~~~a~~~t~l~Gi~~~llG~lrLg~l~~flp~~vi~Gf~~gigl~ 222 (607)
-+.+....+-. + + ...+++|++ .++.+.-++.+..|+|..++...+-.++..
T Consensus 389 ----RSav~~~sG~~----T--~---~s~i~~~~~-vl~~l~~l~p~f~~iP~~vLaaIIi~a~~~ 440 (665)
T KOG0236|consen 389 ----RSAVNIKSGGR----T--Q---VAGIVSAAL-VLLALLFLGPLFYYIPKCVLAAIIISALIG 440 (665)
T ss_pred ----HHHHHhhcCCc----c--h---HHHHHHHHH-HHHHHHHHHHHhhhhhHHHHHHHHHHHhhH
Confidence 22222211100 0 1 122233332 233334478899999999999977766665
No 53
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=27.91 E-value=3.7e+02 Score=28.88 Aligned_cols=96 Identities=17% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHh---hhhhhhh-hccHHHHHHHHHHHHHHHHHHhhhhhhCccccCCCCcHHHHHHHHHhhcCcC
Q 007335 182 FTVTFFAGVFQSVFGLF---RLGFLVD-FLSHAAIVGFMAGAAIVIGLQQLKGLLGISHFTNKTDVVSVLGSVFSSLHHS 257 (607)
Q Consensus 182 ~~~t~l~Gi~~~llG~l---rLg~l~~-flp~~vi~Gf~~gigl~i~~~ql~~~lG~~~~~~~~~~~~~~~~~~~~l~~~ 257 (607)
..-++....+.+++|.+ |..++-+ ++|.||+.|++..+-..+....-..-+-++
T Consensus 5 ~~~tl~la~ilLliG~~Lr~ki~~lqk~~IPasvIgGli~~il~~~l~~~~~~~~~f~---------------------- 62 (368)
T PF03616_consen 5 ALQTLALASILLLIGKFLRAKIPFLQKLFIPASVIGGLIFAILPLILGGFGGISISFD---------------------- 62 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHccCCchHHHHHHHHHHHHHHHhcCceEEEec----------------------
Q ss_pred CcchhHHHHHHHHHHHHH--HHHHhhhccccccccccchhHHHHHHHHHHHHH
Q 007335 258 YWYPLNFVLGCSFLIFLL--IARFIGRRNKKLFWLPAIAPLLSVILSTLIVYL 308 (607)
Q Consensus 258 ~~~~~~~~ig~~~l~~ll--~~~~~~~~~~~~~~ip~~~~Li~iv~~t~i~~~ 308 (607)
++..+..+-..+-.+-+ -.+.++|..+ ....-..+++++.+.
T Consensus 63 -~~l~~~lm~~fF~~igL~~~~~~lkkgg~--------~~~~~~~~~~~~~~~ 106 (368)
T PF03616_consen 63 -TSLQDFLMIIFFTTIGLGASLKLLKKGGK--------AVLIFLLIAIILAFL 106 (368)
T ss_pred -hhHHHHHHHHHHHHHhhccchhhHHhhHH--------HHHHHHHHHHHHHHH
No 54
>PF09345 DUF1987: Domain of unknown function (DUF1987); InterPro: IPR018530 This family of proteins are functionally uncharacterised.
Probab=27.14 E-value=1.5e+02 Score=25.57 Aligned_cols=58 Identities=14% Similarity=0.173 Sum_probs=45.6
Q ss_pred EEEEEccccEeEcchHHHHHHHHHHHHhhhhhhhhhcCCCCcEEEEEccCCCcccHHHHHHHHHHHh
Q 007335 540 LTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHK 606 (607)
Q Consensus 540 ~i~r~~g~~L~F~n~~~~~~~i~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iD~sa~~~L~~l~~ 606 (607)
.++++.|. =|=-|+..|-+-+.+|++..-+ .+.+.+.+++. ..++.+|..++|.++.+
T Consensus 10 g~l~i~Ge-SypEn~~~Fy~Pi~~wl~~Yl~-------~~~~~i~~~~~-L~YfNTSSsk~l~~i~~ 67 (99)
T PF09345_consen 10 GRLEISGE-SYPENAFAFYQPILDWLEAYLA-------EPNKPITFNFK-LSYFNTSSSKALMDIFD 67 (99)
T ss_pred CEEEEecc-cCccCHHHHHHHHHHHHHHHHh-------CCCCcEEEEEE-EEEEecHhHHHHHHHHH
Confidence 46888888 7778999999999999987652 23456777774 77899999999888764
No 55
>COG1269 NtpI Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]
Probab=26.12 E-value=3.5e+02 Score=31.62 Aligned_cols=45 Identities=18% Similarity=0.315 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHHHH
Q 007335 179 KLVFTVTFFAGVFQSVFGLFRLGFLVDFLSHAAIVGFMAGAAIVIG 224 (607)
Q Consensus 179 ~~a~~~t~l~Gi~~~llG~lrLg~l~~flp~~vi~Gf~~gigl~i~ 224 (607)
...+.++++.|++.+.+|++ +|++-++-+......+.....+..+
T Consensus 456 ~~~m~~sl~iG~~hl~~G~~-lg~~~~~~~~~~~~a~~~~~~w~~~ 500 (660)
T COG1269 456 SNILILSLLIGVLHLSLGLL-LGFINRVRSGDIKGAILPQLLWLLI 500 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHhhcchHHHhhhhHHHHHH
Confidence 45788899999999999999 6776666565555555555554444
No 56
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=24.97 E-value=2e+02 Score=31.12 Aligned_cols=43 Identities=14% Similarity=0.338 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHh---hhhhhhh-hccHHHHHHHHHHHHHHHH
Q 007335 182 FTVTFFAGVFQSVFGLF---RLGFLVD-FLSHAAIVGFMAGAAIVIG 224 (607)
Q Consensus 182 ~~~t~l~Gi~~~llG~l---rLg~l~~-flp~~vi~Gf~~gigl~i~ 224 (607)
...|+...+..+++|-+ |+.++-+ ++|+||+.|++..+-....
T Consensus 7 ~~~tl~~a~lllllG~~l~kki~fl~k~~IPepVvgG~i~ail~~~~ 53 (404)
T COG0786 7 ALETLILAILLLLLGRFLVKKIKFLKKYCIPEPVVGGLIFAILLLLL 53 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHccCCcchHHHHHHHHHHHHH
Confidence 34566677777888866 3556655 7999999999998777665
No 57
>PF04206 MtrE: Tetrahydromethanopterin S-methyltransferase, subunit E ; InterPro: IPR005780 This model describes N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit E in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. 5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0006814 sodium ion transport, 0005737 cytoplasm, 0012506 vesicle membrane
Probab=24.92 E-value=6.9e+02 Score=25.11 Aligned_cols=89 Identities=22% Similarity=0.356 Sum_probs=50.1
Q ss_pred hhCCCchhhHHHhhhhHHHHHHhcCCCccccchhHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007335 120 LAKLDPQYGLYTSVIPPLIYALMGSSREIAIGPVAVVSMLLSALMQNVQDPAADPVAYRKLVFTVTFFAGVFQSVFGLFR 199 (607)
Q Consensus 120 laglpp~~GLyss~i~~liy~lfGss~~~~~Gp~a~~sll~~~~v~~~~~~~~~~~~~~~~a~~~t~l~Gi~~~llG~lr 199 (607)
++|=||.|||+.+.-+.+-|+++.. .+-..++++.+++.++... +.+...|-..|=.-- ...|+
T Consensus 51 iSGEP~aygl~~ai~g~iA~~lm~~-----~~~~~i~ai~~Ga~vAa~v----------~g~ya~taylGR~~s-~~~F~ 114 (269)
T PF04206_consen 51 ISGEPPAYGLWCAIAGAIAWALMSA-----FGLNPILAIAIGAAVAALV----------HGVYATTAYLGRIAS-QKRFG 114 (269)
T ss_pred ccCCCchhhHHHHHHHHHHHHHHHH-----cCccHHHHHHHHHHHHHHH----------HHHHHHHHHhhhHhh-HhhcC
Confidence 4688888999988888888888733 2233566777776666543 333333333332211 11111
Q ss_pred ----hhhhhhhccHHHHHHHHHHHHHHHH
Q 007335 200 ----LGFLVDFLSHAAIVGFMAGAAIVIG 224 (607)
Q Consensus 200 ----Lg~l~~flp~~vi~Gf~~gigl~i~ 224 (607)
+.-+..-+|..+-.+|++--.+..+
T Consensus 115 QPvylDvl~~~~~~i~~haFIa~F~i~~~ 143 (269)
T PF04206_consen 115 QPVYLDVLRSHTPPIMAHAFIATFCIVTI 143 (269)
T ss_pred CCeehHHHhhhchhHHHHHHHHHHHHHHH
Confidence 2234455666666777766555544
No 58
>COG4129 Predicted membrane protein [Function unknown]
Probab=23.88 E-value=2.7e+02 Score=29.55 Aligned_cols=51 Identities=14% Similarity=0.135 Sum_probs=31.6
Q ss_pred hcCCccchhhHHHHHHHHHHHHHhHHHHhhchHHHHHHHHHHHhcccCCHHHHHHHh
Q 007335 410 SAGCQTVVSNIVMAITVLLSLELFTSLLYYTPIAILASIILSALPGLIDINEAINIY 466 (607)
Q Consensus 410 ~~G~rT~la~iv~a~~~ll~ll~l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l~ 466 (607)
+.|.||=-+++-+++.++++- ++ -.|.++.|+|.-+..+.--..+.++..|
T Consensus 8 ~ig~RtlKt~ia~~La~~ia~-~l-----~~~~~~~A~i~AV~~l~~t~~~s~~~~~ 58 (332)
T COG4129 8 KIGARTLKTGLAAGLALLIAH-LL-----GLPQPAFAGISAVLCLSPTIKRSLKRAL 58 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-Hh-----CCCchHHHHHHHhhcccCcchHHHHHHH
Confidence 467777777777777666665 22 2577788888766555544444444444
No 59
>PRK09757 PTS system N-acetylgalactosamine-specific transporter subunit IIC; Provisional
Probab=23.77 E-value=5.4e+02 Score=26.40 Aligned_cols=109 Identities=16% Similarity=0.091 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHH----hHHHHhhchH------HHHHHHHHHHhcccCCHHHHHHHhccCccchhHHHHHHHHHHHH
Q 007335 417 VSNIVMAITVLLSLEL----FTSLLYYTPI------AILASIILSALPGLIDINEAINIYKVDKLDFLACIGAFLGVLFA 486 (607)
Q Consensus 417 la~iv~a~~~ll~ll~----l~~l~~~iP~------~vLa~ili~~~~~li~~~~~~~l~k~~~~d~~v~~~tf~~~~~~ 486 (607)
...+...+...+.+++ ...+++.+|. .+.|+++=.+|+.|+ ++.+|| |....-.++.|+.+.+.
T Consensus 147 ~~~~~~~~~~fl~~~fG~~~v~~~~~~iP~~v~~GL~vaggmLPAvGfAmL----l~~m~~--k~~~~ff~lGF~l~ayl 220 (267)
T PRK09757 147 IVASAYAVIAFLCTYLAQGAMQALVKAMPAWLTHGFEVAGGILPAVGFGLL----LRVMFK--AQYIPYLIAGFLFVCYI 220 (267)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH----HHHHhh--cchHHHHHHHHHHHHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCeeeccccCCCCccccCCCCCC
Q 007335 487 SVEIGLLAAVTISFAKILLNAVRPGIELQGRLPRTDTYGDISQFPM 532 (607)
Q Consensus 487 ~~~~Gi~~Gv~~s~~~~~~~~~rp~~~~lg~~~~~~~~~~~~~~~~ 532 (607)
++..=+.+++.-.++.+++...+.+..--.+ ++.+.-.|.|++.+
T Consensus 221 ~~~~~i~iaiig~~iA~~~~~~~~~~~~~~~-~~~~~~~~~ed~~~ 265 (267)
T PRK09757 221 QVSNLLPVAVLGAGFAVYEFFNAKSRQQAQP-QPVASKNEEEDYSN 265 (267)
T ss_pred CCccHHHHHHHHHHHHHHHHHhccccccccc-cccccccccccccc
No 60
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=22.24 E-value=2.3e+02 Score=26.07 Aligned_cols=52 Identities=12% Similarity=0.149 Sum_probs=35.7
Q ss_pred EEEEccccEeEcchHHHHHHHHHHHHhhhhhhhhhcCCCCcEEEEEccCCCcccHHHHHHHHHH
Q 007335 541 TIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEEL 604 (607)
Q Consensus 541 i~r~~g~~L~F~n~~~~~~~i~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iD~sa~~~L~~l 604 (607)
+++++|+ +.-...+.+.+.+++.-+ +++.+.|+|+.... +-|.++...+.+.
T Consensus 1 vi~i~g~-I~~~~~~~l~~~l~~a~~----------d~~~~~ivl~~~s~-Gg~~~~~~~i~~~ 52 (161)
T cd00394 1 VIFINGV-IEDVSADQLAAQIRFAEA----------DNSVKAIVLEVNTP-GGRVDAGMNIVDA 52 (161)
T ss_pred CEEEEeE-EccchHHHHHHHHHHHHh----------CCCCceEEEEEECC-CcCHHHHHHHHHH
Confidence 4788899 988888888888876321 34688899988643 3466665555443
No 61
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=22.14 E-value=97 Score=28.54 Aligned_cols=20 Identities=15% Similarity=0.335 Sum_probs=12.5
Q ss_pred ccccccccchhHHHHHHHHH
Q 007335 285 KKLFWLPAIAPLLSVILSTL 304 (607)
Q Consensus 285 ~~~~~ip~~~~Li~iv~~t~ 304 (607)
.+.+.+|.|++++++++-.+
T Consensus 27 ~~ll~lPiPGsViGMlLL~l 46 (141)
T PRK04125 27 ASFLPIPMPASVIGLVLLFV 46 (141)
T ss_pred HHHcCCCCcHHHHHHHHHHH
Confidence 33444777788887665543
No 62
>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]. Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane
Probab=22.09 E-value=1e+03 Score=25.73 Aligned_cols=83 Identities=25% Similarity=0.286 Sum_probs=52.5
Q ss_pred hhHHHhhhhHHHHHHhcCCCccccchhHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhh--hhhh
Q 007335 127 YGLYTSVIPPLIYALMGSSREIAIGPVAVVSMLLSALMQNVQDPAADPVAYRKLVFTVTFFAGVFQSVFGLFRL--GFLV 204 (607)
Q Consensus 127 ~GLyss~i~~liy~lfGss~~~~~Gp~a~~sll~~~~v~~~~~~~~~~~~~~~~a~~~t~l~Gi~~~llG~lrL--g~l~ 204 (607)
--+..+.+.+++.+.||+-....-++++. .+.... ...||+.++ ..++.+|++.+++|++.- -.++
T Consensus 242 ~~~~~tGl~s~l~ApfGg~~~nlAaitaA-------Ic~g~e-ah~dp~rRy----~Aav~~Gv~yll~Gl~a~~~v~l~ 309 (378)
T PF03594_consen 242 PLITVTGLASLLAAPFGGHAVNLAAITAA-------ICAGPE-AHPDPSRRY----IAAVAAGVFYLLFGLFAAALVALF 309 (378)
T ss_pred HHHHHHHHHHHHHhhhchhhhHHHHHHHH-------HHcCCc-cCCCcccch----HHHHHHhHHHHHHHHHHHHHHHHH
Confidence 44556888899999999854333333333 333211 123455443 346778999999999963 4467
Q ss_pred hhccHHHHHHHHHHHHHH
Q 007335 205 DFLSHAAIVGFMAGAAIV 222 (607)
Q Consensus 205 ~flp~~vi~Gf~~gigl~ 222 (607)
.-+|.+.+.. ++|.++.
T Consensus 310 ~~lP~~li~~-lAGLALl 326 (378)
T PF03594_consen 310 AALPPALIAA-LAGLALL 326 (378)
T ss_pred HhCCHHHHHH-HHHHHHH
Confidence 8889888765 5566654
No 63
>PF05437 AzlD: Branched-chain amino acid transport protein (AzlD); InterPro: IPR008407 This family consists of a number of bacterial and archaeal branched-chain amino acid transport proteins. AzlD, a member of this group, has been shown by mutational analysis to be involved in branched-chain amino acid transport, and to be involved in conferring resistance to 4-azaleucine []. However, its exact role in these processes is not yet clear []. Based on its hydropathy profile, it has been suggested to be a membrane protein [].
Probab=21.98 E-value=3e+02 Score=23.21 Aligned_cols=22 Identities=27% Similarity=0.575 Sum_probs=18.0
Q ss_pred hHHHHhhchHHHHHHHHHHHhc
Q 007335 433 FTSLLYYTPIAILASIILSALP 454 (607)
Q Consensus 433 l~~l~~~iP~~vLa~ili~~~~ 454 (607)
....++++|.++++++++....
T Consensus 32 ~~~~l~~vp~avl~aLv~~~i~ 53 (99)
T PF05437_consen 32 VRRFLRYVPPAVLAALVVPSIF 53 (99)
T ss_pred HHHHHHHhHHHHHHHHHHHHHc
Confidence 3457899999999999888665
Done!