Query 007335
Match_columns 607
No_of_seqs 298 out of 1901
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 23:12:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007335.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007335hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qe7_A Uracil permease; uracil 100.0 2.3E-28 8E-33 263.2 36.4 333 96-471 14-361 (429)
2 3llo_A Prestin; STAS domain, c 99.5 9.2E-15 3.1E-19 133.9 6.4 90 509-606 1-90 (143)
3 4dgf_A Sulfate transporter sul 99.2 8.1E-12 2.8E-16 113.1 3.9 76 517-606 2-78 (135)
4 4dgh_A Sulfate permease family 99.2 8.7E-12 3E-16 112.1 4.0 74 520-606 2-75 (130)
5 2kln_A Probable sulphate-trans 99.1 3.8E-11 1.3E-15 107.9 4.3 74 524-606 1-74 (130)
6 3ny7_A YCHM protein, sulfate t 98.7 1.2E-08 4.1E-13 89.9 5.8 58 536-606 15-72 (118)
7 3oiz_A Antisigma-factor antago 98.6 2.6E-08 8.9E-13 84.9 3.4 56 537-606 15-70 (99)
8 2ka5_A Putative anti-sigma fac 98.2 1.2E-06 4.3E-11 77.7 6.2 62 533-606 16-78 (125)
9 1sbo_A Putative anti-sigma fac 98.2 1.8E-06 6E-11 74.2 6.4 60 536-606 11-70 (110)
10 1th8_B Anti-sigma F factor ant 98.0 3.7E-06 1.3E-10 72.9 5.3 60 536-606 10-69 (116)
11 1h4x_A SPOIIAA, anti-sigma F f 98.0 3.8E-06 1.3E-10 73.2 4.7 60 536-606 9-68 (117)
12 3t6o_A Sulfate transporter/ant 98.0 2.8E-06 9.5E-11 74.8 3.8 61 535-606 11-74 (121)
13 4hyl_A Stage II sporulation pr 97.8 1E-05 3.6E-10 70.5 3.6 58 536-606 11-68 (117)
14 3zxn_A RSBS, anti-sigma-factor 97.5 0.00013 4.5E-09 64.4 6.5 59 537-606 11-69 (123)
15 3agd_A Salt-tolerant glutamina 89.1 0.34 1.1E-05 51.0 4.9 69 537-606 324-430 (456)
16 3qe7_A Uracil permease; uracil 80.2 39 0.0013 35.6 16.0 83 374-457 41-137 (429)
17 1bts_A BAND 3 anion transport 29.8 33 0.0011 21.1 2.2 19 128-146 6-24 (26)
No 1
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=99.97 E-value=2.3e-28 Score=263.16 Aligned_cols=333 Identities=14% Similarity=0.105 Sum_probs=252.3
Q ss_pred hhhhHHHHHHHHHHHHhhHHHHHHhhCCCchhhHHHhhhhHHHHHHhcCCCcc-ccchh-HHHHHHHHHHHhhhcCCCCC
Q 007335 96 FKSDLMAGLTLASLSIPQSIGYANLAKLDPQYGLYTSVIPPLIYALMGSSREI-AIGPV-AVVSMLLSALMQNVQDPAAD 173 (607)
Q Consensus 96 l~~D~~aGltv~~~~iPq~~aya~laglpp~~GLyss~i~~liy~lfGss~~~-~~Gp~-a~~sll~~~~v~~~~~~~~~ 173 (607)
++.++++|+...+....-.++-..+.|+||..++++|.++++++++++.+|.- ..|+. +.++.+.. +.. .+
T Consensus 14 ~~~~i~~GlQh~lam~~~~v~~PlilGl~~~~~l~~agi~Tllq~~~~~~~lP~~~G~sfafi~~~~~-i~~-~g----- 86 (429)
T 3qe7_A 14 LLQTIPLSLQHLFAMFGATVLVPVLFHINPATVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLL-LLP-LG----- 86 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTCCCCCEEECGGGHHHHHH-HGG-GC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhCCCHHHHHHHHHHHHHHHHHHcCCCCCeEecChHHHHHHHHH-HHh-cC-----
Confidence 56799999998874443333333444999999999999999999998666643 36764 33333322 222 22
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh--hhh--hhhhhccHHHHHHHHHHHHHHHHHHhhhhhhCccccCCCCcHHHHHHH
Q 007335 174 PVAYRKLVFTVTFFAGVFQSVFGLF--RLG--FLVDFLSHAAIVGFMAGAAIVIGLQQLKGLLGISHFTNKTDVVSVLGS 249 (607)
Q Consensus 174 ~~~~~~~a~~~t~l~Gi~~~llG~l--rLg--~l~~flp~~vi~Gf~~gigl~i~~~ql~~~lG~~~~~~~~~~~~~~~~ 249 (607)
++.+...++++|++++++|++ |+| ++.+++|+.|++.+++.+|+.++-.+++...|... . .
T Consensus 87 ----~~~~~gavi~aGli~ill~~~~~~~g~~~l~~~~PpvviG~~i~~IGl~l~~~~~~~~~~~~~-~--~-------- 151 (429)
T 3qe7_A 87 ----YEVALGGFIMCGVLFCLVSFIVKKAGTGWLDVLFPPAAMGAIVAVIGLELAGVAAGMAGLLPA-E--G-------- 151 (429)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHTSSCB-T--T--------
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCCeeeHHHHHHHHHHHHHHHHHhccccCC-C--C--------
Confidence 678899999999999999998 775 89999999999999999999999888887543211 0 0
Q ss_pred HHhhcCcCCcchhHHHHHHHHHHHHHHHHHhhhccccccccccchhHHHHHHHHHHHHHhhcCCCCeeeeeccc-CCCCC
Q 007335 250 VFSSLHHSYWYPLNFVLGCSFLIFLLIARFIGRRNKKLFWLPAIAPLLSVILSTLIVYLTKADKHGVKIVKHIK-GGLNP 328 (607)
Q Consensus 250 ~~~~l~~~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~ip~~~~Li~iv~~t~i~~~~~~~~~~v~~vg~ip-~gl~~ 328 (607)
+. .++..+.++++++++++++.++.|++.| .++.++++++++++++.++..+ .+.+++.| .++|.
T Consensus 152 -----~~--~~~~~~~la~~tl~iii~~~~~~kg~~~-----~~aiLigivvg~~~a~~~G~~d--~~~v~~a~~~~lP~ 217 (429)
T 3qe7_A 152 -----QT--PDSKTIIISITTLAVTVLGSVLFRGFLA-----IIPILIGVLVGYALSFAMGIVD--TTPIINAHWFALPT 217 (429)
T ss_dssp -----BC--CCHHHHHHHHHHHHHHHHHHHSSSTTTT-----THHHHHHHHHHHHHHHHHHHTT--SSHHHHSCSSCCCC
T ss_pred -----cc--ccHHHHHHHHHHHHHHHHHHHHhcccch-----hhHHHHHHHHHHHHHHHhcCCC--cccccccccccccC
Confidence 11 5677888999988888777654444322 3378999999999999887422 22233333 35666
Q ss_pred CCCCcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCC----cCCchHHHHHHHHHHHHhhhccccccccchhh
Q 007335 329 SSAHQLQLTGPHLGQTAKIGLISAVVALTEAIAVGRSFASIKGY----HLDGNKEMVAMGFMNIVGSLTSCYVATGSFSR 404 (607)
Q Consensus 329 p~lp~~~~~~~~~~~~~~~~~~~aiv~~~e~i~~~~~~a~~~~~----~~d~nqEl~a~G~aNi~~s~fg~~p~t~s~sr 404 (607)
+..|++++ . .+...+.++++.++|++...++.+++.|+ +.|.|||+.++|++|+++++||++|.|++..+
T Consensus 218 ~~~P~f~~--~----~i~~i~~i~lV~~~Eslg~~~av~~~~g~~~~~~~~~~r~l~adGla~i~~glfGg~p~Tt~~en 291 (429)
T 3qe7_A 218 LYTPRFEW--F----AILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYGEN 291 (429)
T ss_dssp CCCCCCCH--H----HHHHHTHHHHHHHHHHHHHHHHHHHHHTSCTCCCCCHHHHHHHHHHHHHHHHHHTCCCEEECHHH
T ss_pred CCCCcccH--H----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHHhcCCCCcchHHHh
Confidence 66665543 2 33334567788999999988888877764 45789999999999999999999999987777
Q ss_pred hHHhhhcCCccchhhHHHHHHHHHHHHH--hHHHHhhchHHHHHHHHHHHhcccCCHHHHHHH--hccCcc
Q 007335 405 TAVNFSAGCQTVVSNIVMAITVLLSLEL--FTSLLYYTPIAILASIILSALPGLIDINEAINI--YKVDKL 471 (607)
Q Consensus 405 S~v~~~~G~rT~la~iv~a~~~ll~ll~--l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l--~k~~~~ 471 (607)
+.+...+|++||.+.+++|+++++..++ ++++++.+|.++++++.++ .++++....++.+ .|++..
T Consensus 292 ~g~i~~tg~~sr~~~~~ag~~lillgl~pk~~al~~~IP~~vlgg~~l~-lfg~i~~~Gi~~l~~~~v~~~ 361 (429)
T 3qe7_A 292 IGVMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQMIPLPVMGGVSLL-LYGVIGASGIRVLIESKVDYN 361 (429)
T ss_dssp HHHHHHHTBCCHHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHHH-HHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCCC
Confidence 7888899999999999999988877653 6789999999999997765 8999999988888 677754
No 2
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=99.52 E-value=9.2e-15 Score=133.90 Aligned_cols=90 Identities=28% Similarity=0.488 Sum_probs=76.0
Q ss_pred ccCeeeccccCCCCccccCCCCCCCcCCCcEEEEEEccccEeEcchHHHHHHHHHHHHhhhhhhhhhcCCCCcEEEEEcc
Q 007335 509 RPGIELQGRLPRTDTYGDISQFPMAIKTPGILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMS 588 (607)
Q Consensus 509 rp~~~~lg~~~~~~~~~~~~~~~~~~~~~~i~i~r~~g~~L~F~n~~~~~~~i~~~~~~~~~~~~~~~~~~~~~vIlD~s 588 (607)
||++.+||++|+++.|+|+++||++.+.+++.|+|++|+ |+|+|+++|++++.+.+++.. .++.+.|||||+
T Consensus 1 rP~~~~Lg~~~~t~~~~~~~~~~~~~~~~~v~v~~~~G~-L~f~~a~~~~~~l~~~~~~~~-------~~~~~~vvlDls 72 (143)
T 3llo_A 1 SPSYTVLGQLPDTDVYIDIDAYEEVKEIPGIKIFQINAP-IYYANSDLYSSALKRKTGVNG-------SENIHTVILDFT 72 (143)
T ss_dssp CCSEEEEEECTTSSCEEETTTSTTCBCCTTEEEEEECSC-HHHHHHHHHHHC------------------CCSEEEEECT
T ss_pred CCcEEEEEcCCCCCccccHHHCCCCccCCCeEEEEeCCC-eEechHHHHHHHHHHHHccCC-------CCCceEEEEECC
Confidence 799999999999999999999999999999999999999 999999999999987653210 135789999999
Q ss_pred CCCcccHHHHHHHHHHHh
Q 007335 589 NSMNIDTSGILVLEELHK 606 (607)
Q Consensus 589 ~v~~iD~sa~~~L~~l~~ 606 (607)
.|++||+||+.+|.++.+
T Consensus 73 ~v~~iDssgl~~L~~~~~ 90 (143)
T 3llo_A 73 QVNFMDSVGVKTLAGIVK 90 (143)
T ss_dssp TCCCCCHHHHHHHHHHHH
T ss_pred CCccccHHHHHHHHHHHH
Confidence 999999999999999876
No 3
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*
Probab=99.18 E-value=8.1e-12 Score=113.14 Aligned_cols=76 Identities=21% Similarity=0.287 Sum_probs=60.3
Q ss_pred ccCCCCccccCCCCCCCcCCC-cEEEEEEccccEeEcchHHHHHHHHHHHHhhhhhhhhhcCCCCcEEEEEccCCCcccH
Q 007335 517 RLPRTDTYGDISQFPMAIKTP-GILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDT 595 (607)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~-~i~i~r~~g~~L~F~n~~~~~~~i~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iD~ 595 (607)
++|+|+.|+|+++| ++.+.| ++.|+|++|+ |+|+|+++|++++.+ + .++.+.||+||+.|++||+
T Consensus 2 ~i~gt~~~~~~~~~-~~~~~~~~i~v~~l~G~-L~f~~a~~~~~~l~~-~-----------~~~~~~vvlDls~v~~iDs 67 (135)
T 4dgf_A 2 NADGLEGMDDPDAT-SKKVVPLGVEIYEINGP-FFFGVADRLKGVLDV-I-----------EETPKVFILRMRRVPVIDA 67 (135)
T ss_dssp --------CCTTCG-GGSCCCTTEEEEECCSS-BSHHHHHHHTTGGGG-C-----------SSCCSEEEEECTTCSCBCH
T ss_pred CCCCCCcccchhhh-ccccCCCCEEEEEeece-EEehhHHHHHHHHHH-h-----------cCCCcEEEEEcCCCCccCH
Confidence 68999999999999 677777 9999999999 999999999998753 1 1356899999999999999
Q ss_pred HHHHHHHHHHh
Q 007335 596 SGILVLEELHK 606 (607)
Q Consensus 596 sa~~~L~~l~~ 606 (607)
||+.+|.++.+
T Consensus 68 sgl~~L~~~~~ 78 (135)
T 4dgf_A 68 TGMHALWEFQE 78 (135)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999875
No 4
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=99.18 E-value=8.7e-12 Score=112.12 Aligned_cols=74 Identities=19% Similarity=0.262 Sum_probs=66.8
Q ss_pred CCCccccCCCCCCCcCCCcEEEEEEccccEeEcchHHHHHHHHHHHHhhhhhhhhhcCCCCcEEEEEccCCCcccHHHHH
Q 007335 520 RTDTYGDISQFPMAIKTPGILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGIL 599 (607)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~i~i~r~~g~~L~F~n~~~~~~~i~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iD~sa~~ 599 (607)
+|+.|+|+++|++++..+++.|+|++|+ |+|+|+++|++++.+ + .++.+.|||||+.|++||+||+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~v~v~~~~G~-L~f~~a~~~~~~l~~-~-----------~~~~~~vvlDls~v~~iDssgl~ 68 (130)
T 4dgh_A 2 NAEMSYELAQHGRSTLPRELAVYALEGP-FFFAAAETFERVMGS-I-----------QETPQILILRLKWVPFMDITGIQ 68 (130)
T ss_dssp CHHHHHHHHHTTCSSCCTTEEEEECCSS-CCHHHHHHHHHHHHH-S-----------SSCCSEEEEECTTCCCCCHHHHH
T ss_pred chhhhhhHhhccccCCCCCEEEEEEeee-EeehhHHHHHHHHHH-h-----------ccCCCEEEEECCCCCcccHHHHH
Confidence 6789999999999999999999999999 999999999999854 2 13468999999999999999999
Q ss_pred HHHHHHh
Q 007335 600 VLEELHK 606 (607)
Q Consensus 600 ~L~~l~~ 606 (607)
+|.++.+
T Consensus 69 ~L~~~~~ 75 (130)
T 4dgh_A 69 TLEEMIQ 75 (130)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999875
No 5
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=99.10 E-value=3.8e-11 Score=107.90 Aligned_cols=74 Identities=24% Similarity=0.561 Sum_probs=65.1
Q ss_pred cccCCCCCCCcCCCcEEEEEEccccEeEcchHHHHHHHHHHHHhhhhhhhhhcCCCCcEEEEEccCCCcccHHHHHHHHH
Q 007335 524 YGDISQFPMAIKTPGILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEE 603 (607)
Q Consensus 524 ~~~~~~~~~~~~~~~i~i~r~~g~~L~F~n~~~~~~~i~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iD~sa~~~L~~ 603 (607)
|+|+++||++++.|++.|++++|+ |+|+|+++|++++.+++++. .++.+.|||||+.|++||+||+.+|.+
T Consensus 1 ~~~~~~~~~~~~~~~v~v~~l~G~-L~f~~a~~~~~~l~~~~~~~--------~~~~~~vvlDls~v~~iDssgl~~L~~ 71 (130)
T 2kln_A 1 MHDIDDYPQAKRVPGLVVYRYDAP-LCFANAEDFRRRALTVVDQD--------PGQVEWFVLNAESNVEVDLTALDALDQ 71 (130)
T ss_dssp CCSSSCCCCCCCSSSEEEEECCSC-CBTTTHHHHHHHHHHHTTSS--------SSCCEEEEEECSCCSSSBCSTTTHHHH
T ss_pred CCChhhCcCcccCCCEEEEEECCc-eEechHHHHHHHHHHHHhcC--------CCCceEEEEECCCCChhhHHHHHHHHH
Confidence 788999999999999999999999 99999999999998754321 015789999999999999999999999
Q ss_pred HHh
Q 007335 604 LHK 606 (607)
Q Consensus 604 l~~ 606 (607)
+.+
T Consensus 72 ~~~ 74 (130)
T 2kln_A 72 LRT 74 (130)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 6
>3ny7_A YCHM protein, sulfate transporter; fatty acid biosynthesis(FAB), bicarbonate transport, anion T membrane protein, STAS domain, SLC26; HET: SXM; 1.92A {Escherichia coli}
Probab=98.71 E-value=1.2e-08 Score=89.92 Aligned_cols=58 Identities=17% Similarity=0.272 Sum_probs=51.3
Q ss_pred CCcEEEEEEccccEeEcchHHHHHHHHHHHHhhhhhhhhhcCCCCcEEEEEccCCCcccHHHHHHHHHHHh
Q 007335 536 TPGILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHK 606 (607)
Q Consensus 536 ~~~i~i~r~~g~~L~F~n~~~~~~~i~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iD~sa~~~L~~l~~ 606 (607)
.+++.++|++|+ |||+|++++++++.+.. ++.+.||+||+.|++||+||+.+|.++.+
T Consensus 15 ~~~v~v~~l~G~-L~f~~a~~l~~~l~~~~------------~~~~~vilDl~~v~~iDssgl~~L~~~~~ 72 (118)
T 3ny7_A 15 PDDVLVLRVIGP-LFFAAAEGLFTDLESRL------------EGKRIVILKWDAVPVLDAGGLDAFQRFVK 72 (118)
T ss_dssp CTTEEEEEEESC-BCHHHHHHHHHHHHTTC------------TTCSEEEEEEEECCCBCHHHHHHHHHHHH
T ss_pred CCCEEEEEEece-eEehhHHHHHHHHHHhc------------CCCcEEEEEcCCCCeecHHHHHHHHHHHH
Confidence 468999999999 99999999999986521 24689999999999999999999999876
No 7
>3oiz_A Antisigma-factor antagonist, STAS; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, STAS domain; 1.65A {Rhodobacter sphaeroides} PDB: 3lkl_A
Probab=98.56 E-value=2.6e-08 Score=84.94 Aligned_cols=56 Identities=16% Similarity=0.173 Sum_probs=49.3
Q ss_pred CcEEEEEEccccEeEcchHHHHHHHHHHHHhhhhhhhhhcCCCCcEEEEEccCCCcccHHHHHHHHHHHh
Q 007335 537 PGILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHK 606 (607)
Q Consensus 537 ~~i~i~r~~g~~L~F~n~~~~~~~i~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iD~sa~~~L~~l~~ 606 (607)
+++.++|++|+ |+|+|+++|++++.. .++.+.||+||+.|++||+||+.+|.++.+
T Consensus 15 g~~~v~~l~G~-L~f~~a~~~~~~l~~-------------~~~~~~vvlDls~v~~iDssgl~~L~~~~~ 70 (99)
T 3oiz_A 15 GRERIYRVEGQ-LFYASVEDFMAAFDF-------------REALDRVVIDVSRAHIWDISSVQALDMAVL 70 (99)
T ss_dssp SSEEEEEEEEE-ECGGGHHHHHHTCCT-------------TSCCSEEEEEEEEEEECSHHHHHHHHHHHH
T ss_pred CCEEEEEEeeE-EehhhHHHHHHHHhh-------------cCCCCEEEEECCCCCccCHHHHHHHHHHHH
Confidence 36999999999 999999999998742 135689999999999999999999999875
No 8
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=98.23 E-value=1.2e-06 Score=77.65 Aligned_cols=62 Identities=13% Similarity=0.269 Sum_probs=53.2
Q ss_pred CcCCCcEEEEEEccccEeEcchHHHHHHHHH-HHHhhhhhhhhhcCCCCcEEEEEccCCCcccHHHHHHHHHHHh
Q 007335 533 AIKTPGILTIRINSALFCFANANFIRERIMR-WVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHK 606 (607)
Q Consensus 533 ~~~~~~i~i~r~~g~~L~F~n~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iD~sa~~~L~~l~~ 606 (607)
.+..+++.+++++|+ |+|+|++.+++.+.+ +++ ...+.||+||+.|++||+||+.+|.++.+
T Consensus 16 ~~~~~~~~vv~l~G~-Ld~~~a~~l~~~l~~~~~~-----------~~~~~vvlDls~V~~iDSsGl~~L~~~~~ 78 (125)
T 2ka5_A 16 YKIVDDVVILMPNKE-LNIENAHLFKKWVFDEFLN-----------KGYNKIFLVLSDVESIDSFSLGVIVNILK 78 (125)
T ss_dssp EEECSSCEEECCCSC-CSGGGTHHHHHHHHHHTTT-----------TTCCEEEEECTTCSCCCHHHHHHHHHHHH
T ss_pred ceeeCCEEEEEEecE-EecccHHHHHHHHHHHHhh-----------CCCCEEEEECCCCCEEcHHHHHHHHHHHH
Confidence 345678999999999 999999999999876 442 23578999999999999999999998875
No 9
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A
Probab=98.20 E-value=1.8e-06 Score=74.19 Aligned_cols=60 Identities=15% Similarity=0.322 Sum_probs=51.6
Q ss_pred CCcEEEEEEccccEeEcchHHHHHHHHHHHHhhhhhhhhhcCCCCcEEEEEccCCCcccHHHHHHHHHHHh
Q 007335 536 TPGILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHK 606 (607)
Q Consensus 536 ~~~i~i~r~~g~~L~F~n~~~~~~~i~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iD~sa~~~L~~l~~ 606 (607)
.+++.+++++|+ ++|+|++.+++.+.+.+++ .+.+.+|+|++.|+++|++|+..|.++++
T Consensus 11 ~~~~~vv~l~G~-l~~~~~~~l~~~l~~~~~~----------~~~~~vvlDls~v~~iDssgl~~L~~~~~ 70 (110)
T 1sbo_A 11 QDDKAIVRVQGD-IDAYNSSELKEQLRNFIST----------TSKKKIVLDLSSVSYMDSAGLGTLVVILK 70 (110)
T ss_dssp CSSEEEEEEESC-BSTTTTTHHHHHHHTHHHH----------CSCSEEEEECTTCCCBCHHHHHHHHHHHH
T ss_pred eCCEEEEEEeeE-EccccHHHHHHHHHHHHhc----------CCCcEEEEECCCCcEEccHHHHHHHHHHH
Confidence 468999999999 9999999999998765432 23478999999999999999999999875
No 10
>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1 PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A
Probab=98.05 E-value=3.7e-06 Score=72.94 Aligned_cols=60 Identities=20% Similarity=0.377 Sum_probs=51.9
Q ss_pred CCcEEEEEEccccEeEcchHHHHHHHHHHHHhhhhhhhhhcCCCCcEEEEEccCCCcccHHHHHHHHHHHh
Q 007335 536 TPGILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHK 606 (607)
Q Consensus 536 ~~~i~i~r~~g~~L~F~n~~~~~~~i~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iD~sa~~~L~~l~~ 606 (607)
.+++.+++++|+ |+|.|++.+++.+.+.+++ .+.+.+|+|++.|+++|++|+.+|.++++
T Consensus 10 ~~~~~vv~l~G~-l~~~~~~~l~~~l~~~~~~----------~~~~~vvlDls~v~~iDssgl~~L~~~~~ 69 (116)
T 1th8_B 10 KQDVLIVRLSGE-LDHHTAEELREQVTDVLEN----------RAIRHIVLNLGQLTFMDSSGLGVILGRYK 69 (116)
T ss_dssp ETTEEEEEEEEE-ESHHHHHHHHHHHHHHHHS----------SCCCEEEEEEEEEEEECHHHHHHHHHHHH
T ss_pred ECCEEEEEEeee-eccccHHHHHHHHHHHHhc----------CCCcEEEEECCCCcEEccHHHHHHHHHHH
Confidence 468999999999 9999999999998775431 23678999999999999999999999875
No 11
>1h4x_A SPOIIAA, anti-sigma F factor antagonist; cell differentiation, crystallography, phosphorylation, sigma factor, sporulation; HET: SEP; 1.16A {Bacillus sphaericus} SCOP: c.13.2.1 PDB: 1h4z_A 1h4y_A
Probab=98.02 E-value=3.8e-06 Score=73.20 Aligned_cols=60 Identities=17% Similarity=0.231 Sum_probs=51.8
Q ss_pred CCcEEEEEEccccEeEcchHHHHHHHHHHHHhhhhhhhhhcCCCCcEEEEEccCCCcccHHHHHHHHHHHh
Q 007335 536 TPGILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHK 606 (607)
Q Consensus 536 ~~~i~i~r~~g~~L~F~n~~~~~~~i~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iD~sa~~~L~~l~~ 606 (607)
.+++.+++++|+ ++|.|++.+++.+.+.+++ .+.+.+++|++.|+++|++|+.+|.++++
T Consensus 9 ~~~~~vl~l~G~-l~~~~~~~l~~~l~~~~~~----------~~~~~vvlDls~v~~iDssgl~~L~~~~~ 68 (117)
T 1h4x_A 9 TRETVVIRLFGE-LDHHAVEQIRAKISTAIFQ----------GAVTTIIWNFERLSFMDSSGVGLVLGRMR 68 (117)
T ss_dssp ETTEEEEEEEEE-ECHHHHHHHHHHHHHHHHH----------TSCSEEEEEEEEEEEECTHHHHHHHHHHH
T ss_pred eCCEEEEEEEeE-EchhhHHHHHHHHHHHHhc----------CCCCEEEEECCCCcEechHHHHHHHHHHH
Confidence 468899999999 9999999999998875431 23578999999999999999999998875
No 12
>3t6o_A Sulfate transporter/antisigma-factor antagonist S; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.10A {Planctomyces limnophilus}
Probab=98.01 E-value=2.8e-06 Score=74.80 Aligned_cols=61 Identities=16% Similarity=0.134 Sum_probs=52.1
Q ss_pred CCCcEEEEEEccccE---eEcchHHHHHHHHHHHHhhhhhhhhhcCCCCcEEEEEccCCCcccHHHHHHHHHHHh
Q 007335 535 KTPGILTIRINSALF---CFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHK 606 (607)
Q Consensus 535 ~~~~i~i~r~~g~~L---~F~n~~~~~~~i~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iD~sa~~~L~~l~~ 606 (607)
+.+++.+++++|. + +|+|++.+++++.+.+. ..+.+.||+|++.|++||++|+.+|.++++
T Consensus 11 ~~~~~~vv~l~G~-l~~ld~~~~~~l~~~l~~~l~----------~~~~~~vvlDls~v~~iDSsGl~~L~~~~~ 74 (121)
T 3t6o_A 11 HEAQVTVISFPAV-FQRLRETEVEQIASTFLAAMQ----------GAQPRKVLIDLEGVEFFGSSFIELLVRGWK 74 (121)
T ss_dssp EETTEEEEECCGG-GSEECHHHHHHHHHHHHHTTC----------CSSSCEEEEECTTCCEECHHHHHHHHHHHH
T ss_pred EECCEEEEEEccc-cccCchhhHHHHHHHHHHHHh----------hcCCCeEEEECCCCCEEcHHHHHHHHHHHH
Confidence 3468999999999 7 89999999999876442 134688999999999999999999999875
No 13
>4hyl_A Stage II sporulation protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 1.75A {Haliangium ochraceum}
Probab=97.80 E-value=1e-05 Score=70.45 Aligned_cols=58 Identities=19% Similarity=0.293 Sum_probs=49.8
Q ss_pred CCcEEEEEEccccEeEcchHHHHHHHHHHHHhhhhhhhhhcCCCCcEEEEEccCCCcccHHHHHHHHHHHh
Q 007335 536 TPGILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHK 606 (607)
Q Consensus 536 ~~~i~i~r~~g~~L~F~n~~~~~~~i~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iD~sa~~~L~~l~~ 606 (607)
.+++.+++++|+ |+|.|++.+++.+.+.++ ... .+|+||+.|++||++|+.+|.++++
T Consensus 11 ~~~~~v~~l~G~-ld~~~~~~l~~~l~~~~~-----------~~~-~vvlDls~v~~iDssgl~~L~~~~~ 68 (117)
T 4hyl_A 11 EQGIDIITLHGH-LDTRSSPAVQAAVLPRVT-----------AKG-KMILDLREVSYMSSAGLRVLLSLYR 68 (117)
T ss_dssp ETTEEEEEEEEE-ECSSSHHHHHHHHGGGCC-----------TTC-EEEEEEEEEEEECHHHHHHHHHHHH
T ss_pred ECCEEEEEEEeE-EcchhHHHHHHHHHHHHc-----------cCC-eEEEECCCCcEEcHHHHHHHHHHHH
Confidence 468999999999 999999999999876432 112 8999999999999999999998875
No 14
>3zxn_A RSBS, anti-sigma-factor antagonist (STAS) domain protei; transcription, gene regulation; 1.90A {Moorella thermoacetica} PDB: 2vy9_A 3ztb_A*
Probab=97.51 E-value=0.00013 Score=64.35 Aligned_cols=59 Identities=17% Similarity=0.187 Sum_probs=50.8
Q ss_pred CcEEEEEEccccEeEcchHHHHHHHHHHHHhhhhhhhhhcCCCCcEEEEEccCCCcccHHHHHHHHHHHh
Q 007335 537 PGILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHK 606 (607)
Q Consensus 537 ~~i~i~r~~g~~L~F~n~~~~~~~i~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iD~sa~~~L~~l~~ 606 (607)
.++.++++.|. |...+++.+++++.+.+. ..+.+++|+|++.|+++|++++..|.++.+
T Consensus 11 ~~vlvv~l~G~-lD~~~a~~l~~~ll~~i~----------~~~~~~vIlDlsgV~~iDs~g~~~L~~~~~ 69 (123)
T 3zxn_A 11 DDYWVVAIEET-LHDQSVIQFKEELLHNIT----------GVAGKGLVIDISALEVVDEFVTRVLIEISR 69 (123)
T ss_dssp TTEEEEECCCC-C-CHHHHHHHHHHHHHHT----------SSCCSEEEEECTTCSSCCHHHHHHHHHHHH
T ss_pred CCEEEEEEeEe-eCHHHHHHHHHHHHHHHH----------hcCCCEEEEEcCCCCcccHHHHHHHHHHHH
Confidence 46899999999 999999999999987543 245789999999999999999999998765
No 15
>3agd_A Salt-tolerant glutaminase; glutaminase super family, hydrolase; 2.20A {Micrococcus luteus} PDB: 3age_A* 3if5_A 3ih8_A 3ih9_A 3iha_A* 3ihb_A 2dfw_A
Probab=89.07 E-value=0.34 Score=50.96 Aligned_cols=69 Identities=14% Similarity=0.271 Sum_probs=50.8
Q ss_pred CcEEEEEEccccEeEcchHHHHHHHHHHHHhhh-------------------hh------------------h-hhhcCC
Q 007335 537 PGILTIRINSALFCFANANFIRERIMRWVTEEQ-------------------DE------------------L-EETTKR 578 (607)
Q Consensus 537 ~~i~i~r~~g~~L~F~n~~~~~~~i~~~~~~~~-------------------~~------------------~-~~~~~~ 578 (607)
.++.+++++|. |.|+.++++.+++.+.+...+ ++ . .+-...
T Consensus 324 ~~~~~~~l~g~-~~f~~ae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (456)
T 3agd_A 324 GDRVFLHLQGV-IRFGGAEAVLDALTDLRTGAEKPGTGWDAAVYPRWQEAAADRAALSAATGGGAVHEAAAAAARDENDG 402 (456)
T ss_dssp TTEEEEEEEEE-ESHHHHHHHHHHHHHTCCC-------CCTTTCHHHHHHHHSHHHHHHHHCCTTTHHHHHHHC---CCC
T ss_pred CcEEEEEeece-echhHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence 46999999999 999999999988876410000 00 0 001134
Q ss_pred CCcEEEEEccCCCcccHHHHHHHHHHHh
Q 007335 579 TIQAVIIDMSNSMNIDTSGILVLEELHK 606 (607)
Q Consensus 579 ~~~~vIlD~s~v~~iD~sa~~~L~~l~~ 606 (607)
..+.||||++.|..+|-.|...+.|..+
T Consensus 403 ~~~~vv~d~~~v~~~~~~~~~~~~~~~~ 430 (456)
T 3agd_A 403 PIRTVVLNLARVDRIDDVGRRLIAEGVR 430 (456)
T ss_dssp CCCEEEEEEEEEEEECHHHHHHHHHHHH
T ss_pred CCcEEEEEeeecccccHHHHHHHHHHHH
Confidence 6789999999999999999999988754
No 16
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=80.24 E-value=39 Score=35.56 Aligned_cols=83 Identities=14% Similarity=0.087 Sum_probs=51.2
Q ss_pred CCchHHHHHHHHHHHHhhhcccc--cc-cc-chhh----hHHhhhcCCccchhhHH-HHHHHHHHHHHh-----HHHHhh
Q 007335 374 LDGNKEMVAMGFMNIVGSLTSCY--VA-TG-SFSR----TAVNFSAGCQTVVSNIV-MAITVLLSLELF-----TSLLYY 439 (607)
Q Consensus 374 ~d~nqEl~a~G~aNi~~s~fg~~--p~-t~-s~sr----S~v~~~~G~rT~la~iv-~a~~~ll~ll~l-----~~l~~~ 439 (607)
.|++..+++-|++.++=+++++. |. .| +++- +++.. .|-..-+.+++ +|++.++..+++ ..+.++
T Consensus 41 l~~~~~l~~agi~Tllq~~~~~~~lP~~~G~sfafi~~~~~i~~-~g~~~~~gavi~aGli~ill~~~~~~~g~~~l~~~ 119 (429)
T 3qe7_A 41 INPATVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLLLLP-LGYEVALGGFIMCGVLFCLVSFIVKKAGTGWLDVL 119 (429)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTTCCCCCEEECGGGHHHHHHHGG-GCHHHHHHHHHHHHHHHHHHHHHHHTTCSHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCCeEecChHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 57789999999999998887544 33 11 2222 12211 23333333333 444444443332 258899
Q ss_pred chHHHHHHHHHHHhcccC
Q 007335 440 TPIAILASIILSALPGLI 457 (607)
Q Consensus 440 iP~~vLa~ili~~~~~li 457 (607)
+|..+.+.++...|+.+.
T Consensus 120 ~PpvviG~~i~~IGl~l~ 137 (429)
T 3qe7_A 120 FPPAAMGAIVAVIGLELA 137 (429)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CCCeeeHHHHHHHHHHHH
Confidence 999999999988887775
No 17
>1bts_A BAND 3 anion transport protein; transmembrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 1btt_A
Probab=29.81 E-value=33 Score=21.06 Aligned_cols=19 Identities=21% Similarity=0.548 Sum_probs=14.5
Q ss_pred hHHHhhhhHHHHHHhcCCC
Q 007335 128 GLYTSVIPPLIYALMGSSR 146 (607)
Q Consensus 128 GLyss~i~~liy~lfGss~ 146 (607)
.+.++.+.+++|++|+..+
T Consensus 6 ~i~s~ai~Gi~f~lf~gQP 24 (26)
T 1bts_A 6 LLISTAVQGILFALLGAXX 24 (26)
T ss_dssp HHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 5678888999999998854
Done!