BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007337
(607 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 412 bits (1060), Expect = e-115, Method: Compositional matrix adjust.
Identities = 242/580 (41%), Positives = 337/580 (58%), Gaps = 45/580 (7%)
Query: 60 RVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRS 119
++L LA P+ +L A L ++SV S+ P F GKIID++ T ++ L +
Sbjct: 9 KLLGLAYPERRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIY--TNPTVDYSDNLTRLCL 66
Query: 120 TILSIFLIVIVGSVCTALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLS 179
+ ++FL G+ A+R +L ++ +R+V RLR +LFS ++ QE+AF+D TRTGEL++
Sbjct: 67 GLSAVFL---CGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELIN 123
Query: 180 RLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLTLLALVVVPAISVAVRKFG 239
RLS DT ++ + T NLS+ LR + A +G+ MF S L L VVP +S+ +G
Sbjct: 124 RLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYG 183
Query: 240 RFLRELSHKTQXXXXXXXXXXEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAK 299
R+LR+L+ TQ EE G +RTVR+F +E EI +Y+ KVD ++L ++A
Sbjct: 184 RYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAF 243
Query: 300 VVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFIXXXXXXXXXXXXXXXXXX 359
FFG + L V+ V+ G L + MT G L+SF+
Sbjct: 244 ARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYS 303
Query: 360 VAMKAAGASRRVFQLLDRVSSMP-KSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGI 418
MK GA R+++LL+R +P G G +E +V FAYP+RP + +
Sbjct: 304 ELMKGLGAGGRLWELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDF 363
Query: 419 TLKLLSGSKIALVGPSGGG------------------------------------KISIV 442
+L + SGS ALVGPSG G KI V
Sbjct: 364 SLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTV 423
Query: 443 SQEPVLFNCSIEENIAYGCDGKAS--SADIENAAKMANAHDFISNFPEKYQTFVGERGVR 500
SQEP+LF+CSI ENIAYG D +S + +I+ A++ANA FI NFP+ + T VGE+GV
Sbjct: 424 SQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL 483
Query: 501 LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLS 560
LSGGQKQR+AIARAL+ NP+ILLLDEATSALDAE+EYLVQ+A+D LM GRTVLVIAHRLS
Sbjct: 484 LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLS 543
Query: 561 TVQSADTVAVVSDGEIVESGTHEELLSK-GGVYTALVKRQ 599
T+++A+ VAV+ G+I E G HEELLSK G+Y L+ +Q
Sbjct: 544 TIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQ 583
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 410 bits (1054), Expect = e-114, Method: Compositional matrix adjust.
Identities = 248/609 (40%), Positives = 347/609 (56%), Gaps = 50/609 (8%)
Query: 32 KRNDASENGNVTDLEHGDA-VPAANVGFGRVLALAKPDAGKLIIATVALLIASVSSILIP 90
+R A+ G+ L A +P A ++L LA P+ +L A L ++SV S+ P
Sbjct: 15 RRGPAAPPGDKGRLRPAAAGLPEAR----KLLGLAYPERRRLAAAVGFLTMSSVISMSAP 70
Query: 91 KFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSSASERVV 150
F GKIID++ T ++ L + + ++FL G+ A+R +L ++ +R+V
Sbjct: 71 FFLGKIIDVIY--TNPTVDYSDNLTRLCLGLSAVFL---CGAAANAIRVYLMQTSGQRIV 125
Query: 151 ARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGL 210
RLR +LFS ++ QE+AF+D TRTGEL++RLS DT ++ + T NLS+ LR + A +G+
Sbjct: 126 NRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGI 185
Query: 211 GFMFATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQXXXXXXXXXXEESFGAIRTV 270
MF S L L VVP +S+ +GR+LR+L+ TQ EE G +RTV
Sbjct: 186 SMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTV 245
Query: 271 RSFAQEKNEISRYSEKVDETLKLGLQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITG 330
R+F +E EI +Y+ KVD ++L ++A FFG + L V+ V+ G L +
Sbjct: 246 RAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATGLSGNLIVLSVLYKGGLLMGSA 305
Query: 331 SMTPGALTSFIXXXXXXXXXXXXXXXXXXVAMKAAGASRRVFQLLDRVSSMP-KSGNQCP 389
MT G L+SF+ MK GA R+++LL+R +P G
Sbjct: 306 HMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFNEGVILN 365
Query: 390 LGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGG------------ 437
G +E +V FAYP+RP + + +L + SGS ALVGPSG G
Sbjct: 366 EKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLY 425
Query: 438 ------------------------KISIVSQEPVLFNCSIEENIAYGCDGKAS--SADIE 471
KI VSQEP+LF+CSI ENIAYG D +S + +I+
Sbjct: 426 DPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQ 485
Query: 472 NAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSAL 531
A++ANA FI NFP+ + T VGE+GV LSGGQKQR+AIARAL+ NP+ILLLDEATSAL
Sbjct: 486 RVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSAL 545
Query: 532 DAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSK-GG 590
DAE+EYLVQ+A+D LM GRTVLVIAH LST+++A+ VAV+ G+I E G HEELLSK G
Sbjct: 546 DAENEYLVQEALDRLMDGRTVLVIAHHLSTIKNANMVAVLDQGKITEYGKHEELLSKPNG 605
Query: 591 VYTALVKRQ 599
+Y L+ +Q
Sbjct: 606 IYRKLMNKQ 614
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 302 bits (773), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 182/494 (36%), Positives = 261/494 (52%), Gaps = 42/494 (8%)
Query: 145 ASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLS 204
A+ R + ++R+ F ++NQEI ++DV GEL +RL++D I + + ++
Sbjct: 135 AAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMA 194
Query: 205 TAFIGLGFMFATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQXXXXXXXXXXEESF 264
T F G F WKLTL+ L + P + ++ + + L + K EE
Sbjct: 195 TFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVL 254
Query: 265 GAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVGLFFGGLNAASTLSVIVVVIYGA 324
AIRTV +F +K E+ RY+ ++E +LG+++A + G S + YG
Sbjct: 255 AAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGT 314
Query: 325 NLTITGSMTPGALTSFIXXXXXXXXXXXXXXXXXXVAMKAAGASRRVFQLLDR---VSSM 381
+L I+ + G + + A GA+ VF+++D + S
Sbjct: 315 SLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSF 374
Query: 382 PKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK--- 438
KSG++ P Q G +E ++ F+YPSR +LKG+ LK+ SG +ALVG SG GK
Sbjct: 375 SKSGHK-PDNIQ-GNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTT 432
Query: 439 ---------------------------------ISIVSQEPVLFNCSIEENIAYGCDGKA 465
I +VSQEPVLF +I ENI YG +
Sbjct: 433 VQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGRE-DV 491
Query: 466 SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLD 525
+ +IE A K ANA+DFI P ++ T VGERG +LSGGQKQR+AIARAL+ NP+ILLLD
Sbjct: 492 TMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLD 551
Query: 526 EATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEEL 585
EATSALD ESE +VQ A+D +GRT +VIAHRLSTV++AD +A G IVE G H+EL
Sbjct: 552 EATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDEL 611
Query: 586 LSKGGVYTALVKRQ 599
+ + G+Y LV Q
Sbjct: 612 MREKGIYFKLVMTQ 625
Score = 279 bits (713), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 190/595 (31%), Positives = 301/595 (50%), Gaps = 58/595 (9%)
Query: 51 VPAANVGFGRVLALAKPDAGKLIIATVALLIASVSSILIPKFG---GKIIDIVS--GDTE 105
VP A+ F R+L L + + V + A ++ L P F K++ + + G E
Sbjct: 688 VPPAS--FWRILKLNSTEWPYFV---VGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPE 742
Query: 106 TPEQKAEALAAVRSTILSIFLIV-IVGSVCTALRAWLFSSASERVVARLRKNLFSHLINQ 164
T Q + + +FLI+ I+ + L+ + F A E + RLR +F ++ Q
Sbjct: 743 TQRQNSNLFSL-------LFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQ 795
Query: 165 EIAFYDVTR--TGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLTL 222
+++++D + TG L +RL+ D +K A + L+ +N++ G+ W+LTL
Sbjct: 796 DVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTL 855
Query: 223 LALVVVPAISVAVRKFGRFLRELSHKTQXXXXXXXXXXEESFGAIRTVRSFAQEKNEISR 282
L L +VP I++A + L + K + E+ RTV S +E+ +
Sbjct: 856 LLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETM 915
Query: 283 YSEKVDETLKLGLQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFIX 342
Y++ + + +++A V G+ F A S +GA L MT +
Sbjct: 916 YAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFS 975
Query: 343 XXXXXXXXXXXXXXXXXVAMKAAGASRRVFQLLDRVSSMPKSGNQCPLGDQ-DGEVELDD 401
KA ++ + +++++ + Q + +G V+
Sbjct: 976 AIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSG 1035
Query: 402 VWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK----------------------- 438
V F YP+RP+ VL+G++L++ G +ALVG SG GK
Sbjct: 1036 VVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGK 1095
Query: 439 -------------ISIVSQEPVLFNCSIEENIAYGCDGKA-SSADIENAAKMANAHDFIS 484
+ IVSQEP+LF+CSI ENIAYG + + S +I AAK AN H FI
Sbjct: 1096 EIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFID 1155
Query: 485 NFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMD 544
+ P+KY T VG++G +LSGGQKQR+AIARAL+ P ILLLDEATSALD ESE +VQ+A+D
Sbjct: 1156 SLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALD 1215
Query: 545 SLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQ 599
+GRT +VIAHRLST+Q+AD + V+ +G++ E GTH++LL++ G+Y ++V Q
Sbjct: 1216 KAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQ 1270
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 302 bits (773), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 182/494 (36%), Positives = 261/494 (52%), Gaps = 42/494 (8%)
Query: 145 ASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLS 204
A+ R + ++R+ F ++NQEI ++DV GEL +RL++D I + + ++
Sbjct: 135 AAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMA 194
Query: 205 TAFIGLGFMFATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQXXXXXXXXXXEESF 264
T F G F WKLTL+ L + P + ++ + + L + K EE
Sbjct: 195 TFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVL 254
Query: 265 GAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVGLFFGGLNAASTLSVIVVVIYGA 324
AIRTV +F +K E+ RY+ ++E +LG+++A + G S + YG
Sbjct: 255 AAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGT 314
Query: 325 NLTITGSMTPGALTSFIXXXXXXXXXXXXXXXXXXVAMKAAGASRRVFQLLDR---VSSM 381
+L I+ + G + + A GA+ VF+++D + S
Sbjct: 315 SLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSF 374
Query: 382 PKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK--- 438
KSG++ P Q G +E ++ F+YPSR +LKG+ LK+ SG +ALVG SG GK
Sbjct: 375 SKSGHK-PDNIQ-GNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTT 432
Query: 439 ---------------------------------ISIVSQEPVLFNCSIEENIAYGCDGKA 465
I +VSQEPVLF +I ENI YG +
Sbjct: 433 VQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGRE-DV 491
Query: 466 SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLD 525
+ +IE A K ANA+DFI P ++ T VGERG +LSGGQKQR+AIARAL+ NP+ILLLD
Sbjct: 492 TMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLD 551
Query: 526 EATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEEL 585
EATSALD ESE +VQ A+D +GRT +VIAHRLSTV++AD +A G IVE G H+EL
Sbjct: 552 EATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDEL 611
Query: 586 LSKGGVYTALVKRQ 599
+ + G+Y LV Q
Sbjct: 612 MREKGIYFKLVMTQ 625
Score = 279 bits (713), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 195/597 (32%), Positives = 300/597 (50%), Gaps = 62/597 (10%)
Query: 51 VPAANVGFGRVLALAKPDAGKLIIATVALLIASVSSILIPKFG---GKIIDIVS--GDTE 105
VP A+ F R+L L + + V + A ++ L P F K++ + + G E
Sbjct: 688 VPPAS--FWRILKLNSTEWPYFV---VGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPE 742
Query: 106 TPEQKAEALAAVRSTILSIFLIV-IVGSVCTALRAWLFSSASERVVARLRKNLFSHLINQ 164
T Q + + +FLI+ I+ + L+ + F A E + RLR +F ++ Q
Sbjct: 743 TQRQNSNLFSL-------LFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQ 795
Query: 165 EIAFYDVTR--TGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLTL 222
+++++D + TG L +RL+ D +K A + L+ +N++ G+ W+LTL
Sbjct: 796 DVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTL 855
Query: 223 LALVVVPAISVAVRKFGRFLRELSHKTQXXXXXXXXXXEESFGAIRTVRSFAQEKNEISR 282
L L +VP I++A + L + K + E+ RTV S +E+ +
Sbjct: 856 LLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETM 915
Query: 283 YSEKVDETLKLGLQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMT-PGALTSFI 341
Y++ + + +++A V G+ F A S +GA L MT L F
Sbjct: 916 YAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAACFRFGAYLVTQQLMTFENVLLVFS 975
Query: 342 XXXXXXXXXXXXXXXXXXVAMKAAGASR--RVFQLLDRVSSMPKSGNQCPLGDQDGEVEL 399
A AS R+ + + S G + + +G V+
Sbjct: 976 AIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNM--LEGNVQF 1033
Query: 400 DDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK--------------------- 438
V F YP+RP+ VL+G++L++ G +ALVG SG GK
Sbjct: 1034 SGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLD 1093
Query: 439 ---------------ISIVSQEPVLFNCSIEENIAYGCDGKA-SSADIENAAKMANAHDF 482
+ IVSQEP+LF+CSI ENIAYG + + S +I AAK AN H F
Sbjct: 1094 GKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQF 1153
Query: 483 ISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDA 542
I + P+KY T VG++G +LSGGQKQR+AIARAL+ P ILLLDEATSALD ESE +VQ+A
Sbjct: 1154 IDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEA 1213
Query: 543 MDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQ 599
+D +GRT +VIAHRLST+Q+AD + V+ +G++ E GTH++LL++ G+Y ++V Q
Sbjct: 1214 LDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQ 1270
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 301 bits (770), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 208/632 (32%), Positives = 317/632 (50%), Gaps = 69/632 (10%)
Query: 23 PLLDHGGRRKRNDASENGNVTDLEHGDAVPAANVGFGRVLALAKPDAGKLII----ATVA 78
P++D R DA +LE +A +L A+P A L I AT+
Sbjct: 709 PVIDEKEERIGKDALSRLK-QELEENNA---QKTNLFEILYHARPHALSLFIGMSTATIG 764
Query: 79 LLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALR 138
I S+ F +++ +G+ A+ L+ L ++ +C+ L
Sbjct: 765 GFIYPTYSVFFTSF----MNVFAGN------PADFLSQGHFWALMFLVLAAAQGICSFLM 814
Query: 139 AWLFSSASERVVARLRKNLFSHLINQEIAFYDVTR--TGELLSRLSEDTQIIKNAATTNL 196
+ ASE + LR LF ++++Q I F+D + +G++ +RL+ D ++ A
Sbjct: 815 TFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRF 874
Query: 197 SEALRNLSTAFIGLGFMFATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQXXXXXX 256
S + L + G+G F W++ LL + ++P ++ GR + K+
Sbjct: 875 STVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADS 934
Query: 257 XXXXEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVGLFFGGLNAASTLSV 316
E+ +RTV++ A+E + EK+D K +++A + GL +G A+S L +
Sbjct: 935 GKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGC--ASSVLYL 992
Query: 317 IVVVIY--GANLTITG--SMTPGALTSFIXXXXXXXXXXXXXXXXXXVAMKAAGASRRVF 372
+ Y G L IT +M P + + KA A +F
Sbjct: 993 LNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIF 1052
Query: 373 QLLDRVS---SMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIA 429
+L ++S S+ +G + L G+V +V FAYP RP +LKG++ + G +A
Sbjct: 1053 GMLRKISKIDSLSLAGEKKKL---YGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLA 1109
Query: 430 LVGPSGGGK------------------------------------ISIVSQEPVLFNCSI 453
LVGPSG GK I+IVSQEP LF+CSI
Sbjct: 1110 LVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSI 1169
Query: 454 EENIAYGCD-GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIA 512
ENI YG D + A +E AA++AN H+FI+ PE ++T VG+RG +LSGGQKQR+AIA
Sbjct: 1170 AENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIA 1229
Query: 513 RALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVS 572
RAL+ NP+ILLLDEATSALD ESE +VQ+A+D +GRT +VIAHRL+TV +AD +AVVS
Sbjct: 1230 RALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVS 1289
Query: 573 DGEIVESGTHEELLSKGGVYTALVKRQLQEPK 604
+G I+E GTH +L+S+ G Y L ++Q+ E K
Sbjct: 1290 NGTIIEKGTHTQLMSEKGAYYKLTQKQMTEKK 1321
Score = 290 bits (742), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 170/494 (34%), Positives = 262/494 (53%), Gaps = 44/494 (8%)
Query: 146 SERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLST 205
+E++ RLR+ ++ QEI+++D +G L ++L ++ + +K + A + LS
Sbjct: 164 AEQMNNRLRREFVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIGMAFQYLSQ 223
Query: 206 AFIGLGFMFATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQXXXXXXXXXXEESFG 265
G F SW+LTL+ L V P ++ + + + + EE+
Sbjct: 224 FITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETIS 283
Query: 266 AIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVGLFFGGLNAASTLSVIVVVIYGAN 325
+IRTV S + E+ RYS V+E K G+ + +G+ FG + A++ +S + G
Sbjct: 284 SIRTVVSLNGLRYELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVG 343
Query: 326 LTITGSMTPGALTSFIXXXXXXXXXXXXXXXXXXVAMKAAGASRRVFQLLDRVSSMPKSG 385
GS+ G + + V A GA+ ++++LDR P
Sbjct: 344 WVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDR---KPVID 400
Query: 386 NQCPLGDQD----GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK--- 438
+ G +D G++ +++V F YPSRP+ +L+G+ L++ +G +ALVG SG GK
Sbjct: 401 SSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTI 460
Query: 439 ---------------------------------ISIVSQEPVLFNCSIEENIAYGCDGKA 465
+++VSQEP LFNC+IEENI+ G +G
Sbjct: 461 ISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEG-I 519
Query: 466 SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLD 525
+ ++ A KMANA FI P Y T VG+RG +LSGGQKQR+AIARAL+ NP+ILLLD
Sbjct: 520 TREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLD 579
Query: 526 EATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEEL 585
EATSALDAESE +VQ A+D KGRT ++IAHRLST+++AD + +G++VE G H L
Sbjct: 580 EATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRAL 639
Query: 586 LSKGGVYTALVKRQ 599
+++ G+Y LV Q
Sbjct: 640 MAQQGLYYDLVTAQ 653
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 293 bits (751), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 191/577 (33%), Positives = 282/577 (48%), Gaps = 41/577 (7%)
Query: 60 RVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIID-IVSGDTETPEQKAEALAAVR 118
R L KP ++ + +I +LIP ID +++ T ++K L
Sbjct: 4 RYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAI 63
Query: 119 STILSIFLIVIVGSVCTALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELL 178
+++F+ VIV +R +L S +++ +RK L++HL FY + G+++
Sbjct: 64 G--IALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVI 121
Query: 179 SRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLTLLALVVVPAISVAVRKF 238
SR+ D + K+ T L + T I L MF KLTL AL + P + V F
Sbjct: 122 SRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVF 181
Query: 239 GRFLRELSHKTQXXXXXXXXXXEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQA 298
LR+L+ + E I V+SFA E NE + +K L L+
Sbjct: 182 FGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHT 241
Query: 299 KVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFIXXXXXXXXXXXXXXXXX 358
+ F +N + + I+V+ GA L I+GS+T G L +F+
Sbjct: 242 RWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASF 301
Query: 359 XVAMKAAGASRRVFQLLDRVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGI 418
++ + RVFQL+D + P+ + G +++D V F Y +LK I
Sbjct: 302 TTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAP-ILKDI 360
Query: 419 TLKLLSGSKIALVGPSGGGK------------------------------------ISIV 442
L + G +A VG SGGGK I +V
Sbjct: 361 NLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLV 420
Query: 443 SQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLS 502
Q+ +LF+ +++ENI G A+ ++ AAKMANAHDFI N P+ Y T VGERGV+LS
Sbjct: 421 QQDNILFSDTVKENILLG-RPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLS 479
Query: 503 GGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTV 562
GGQKQR++IAR + NP IL+LDEATSALD ESE ++Q+A+D L K RT L++AHRLST+
Sbjct: 480 GGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTI 539
Query: 563 QSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQ 599
AD + V+ +G IVE+GTH EL++K G Y L Q
Sbjct: 540 THADKIVVIENGHIVETGTHRELIAKQGAYEHLYSIQ 576
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 264 bits (675), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 194/606 (32%), Positives = 295/606 (48%), Gaps = 79/606 (13%)
Query: 47 HGDAVPAANVGFGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTET 106
H D + F R+ P LI+A +AL++ + S + ++D G T+
Sbjct: 2 HNDKDLSTWQTFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTD- 60
Query: 107 PEQKAEALAAVRSTILSIFLIVI----VGSVCTALRAWLFSSASERVVARLRKNLFSHLI 162
RS +L + L+VI + + + + ++ S S +VV +R+ LF H++
Sbjct: 61 -----------RSVLLWMPLVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMM 109
Query: 163 NQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLG-FMFATSWKLT 221
+AF+D TG LLSR++ D++ + ++++ L +R + IGL MF SW+L+
Sbjct: 110 GMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVRE-GASIIGLFIMMFYYSWQLS 168
Query: 222 LLALVVVPAISVAVRKFGRFLRELSHKTQXXXXXXXXXXEESFGAIRTVRSFAQEKNEIS 281
++ +V+ P +S+A+R + R +S Q E+ + V F ++ E
Sbjct: 169 IILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETK 228
Query: 282 RYSEKVDETLKLGLQQAKVVGLFFGGLNAASTLS----------VIVVVIYGANL-TITG 330
R+ +KV K+ LQ K+V +AS++S + V+Y A+ ++
Sbjct: 229 RF-DKVSN--KMRLQGMKMV--------SASSISDPIIQLIASLALAFVLYAASFPSVMD 277
Query: 331 SMTPGALTSFIXXXXXXXXXXXXXXXXXXVAMKAAGASRRVFQLLDRVSSMPKSGNQCPL 390
S+T G +T + A + +F +LD S K + +
Sbjct: 278 SLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILD--SEQEKDEGKRVI 335
Query: 391 GDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------ 438
G++E +V F YP R L+ I LK+ +G +ALVG SG GK
Sbjct: 336 DRATGDLEFRNVTFTYPGREVP-ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD 394
Query: 439 ------------------------ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAA 474
+++VSQ LFN ++ NIAY + S IE AA
Sbjct: 395 IDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAA 454
Query: 475 KMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAE 534
+MA A DFI+ T +GE GV LSGGQ+QR+AIARAL+ + IL+LDEATSALD E
Sbjct: 455 RMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTE 514
Query: 535 SEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTA 594
SE +Q A+D L K RT LVIAHRLST++ AD + VV DG IVE GTH ELL++ GVY
Sbjct: 515 SERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQ 574
Query: 595 LVKRQL 600
L K Q
Sbjct: 575 LHKMQF 580
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 261 bits (668), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 188/597 (31%), Positives = 293/597 (49%), Gaps = 61/597 (10%)
Query: 47 HGDAVPAANVGFGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTET 106
H D + F R+ P LI+A VAL++ + S + ++D G T+
Sbjct: 2 HNDKDLSTWQTFRRLWPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKTD- 60
Query: 107 PEQKAEALAAVRSTILSIFLIVI----VGSVCTALRAWLFSSASERVVARLRKNLFSHLI 162
RS ++ + L+VI + + + + ++ S S +VV +R+ LF H++
Sbjct: 61 -----------RSVLVWMPLVVIGLMILRGITSYVSSYCISWVSGKVVMTMRRRLFGHMM 109
Query: 163 NQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLG-FMFATSWKLT 221
++F+D TG LLSR++ D++ + ++++ L +R + IGL MF SW+L+
Sbjct: 110 GMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVRE-GASIIGLFIMMFYYSWQLS 168
Query: 222 LLALVVVPAISVAVRKFGRFLRELSHKTQXXXXXXXXXXEESFGAIRTVRSFAQEKNEIS 281
++ +V+ P +S+A+R + R +S Q E+ + V F ++ E
Sbjct: 169 IILIVLAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETK 228
Query: 282 RYSEKVDETLKL-GLQQAKVVGLFFGGLNAASTLSVIVVVIYGANL-TITGSMTPGALTS 339
R+ +KV ++L G++ + + ++L+ + V+Y A+ ++ S+T G +T
Sbjct: 229 RF-DKVSNRMRLQGMKMVSASSISDPIIQLIASLA-LAFVLYAASFPSVMDSLTAGTITV 286
Query: 340 FIXXXXXXXXXXXXXXXXXXVAMKAAGASRRVFQLLDRVSSMPKSGNQCPLGDQDGEVEL 399
+ A + +F +LD S K + + G+VE
Sbjct: 287 VFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFTILD--SEQEKDEGKRVIERATGDVEF 344
Query: 400 DDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK--------------------- 438
+V F YP R + L+ I LK+ +G +ALVG SG GK
Sbjct: 345 RNVTFTYPGR-DVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMD 403
Query: 439 ---------------ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFI 483
+++VSQ LFN ++ NIAY + S IE AA+MA A DFI
Sbjct: 404 GHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFI 463
Query: 484 SNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAM 543
+ T +GE GV LSGGQ+QR+AIARAL+ + IL+LDEATSALD ESE +Q A+
Sbjct: 464 NKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL 523
Query: 544 DSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQL 600
D L K RT LVIAHRLST++ AD + VV DG IVE GTH +LL GVY L K Q
Sbjct: 524 DELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHRGVYAQLHKMQF 580
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 256 bits (655), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 172/583 (29%), Positives = 291/583 (49%), Gaps = 62/583 (10%)
Query: 60 RVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRS 119
R+L +P LI+ V + ++S+ +L P GK ID+V R
Sbjct: 27 RLLGYLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVV-------------FVPRRF 73
Query: 120 TILSIFLIVIVGSV--CTALRAWL----FSSASERVVARLRKNLFSHLINQEIAFYDVTR 173
+L +++ I+G++ T+L WL + S+ VV RLRK LF L + F+D T
Sbjct: 74 DLLPRYML-ILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTP 132
Query: 174 TGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLTLLALVVVPAISV 233
G+++SR+ D I N ++ + + T + MF + L+L+ L +VP +
Sbjct: 133 HGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVL 192
Query: 234 AVRKFGRFLRELSHKTQXXXXXXXXXXEESFGAIRTVRSFAQEKNEISRYSEKVDETL-K 292
+ R+ ++ Q EE + ++ F +E+ E+ ++ ++V+E+L K
Sbjct: 193 ITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKF-DRVNESLRK 251
Query: 293 LGLQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFIXXXXXXXXXXX 352
+G + G+ +N + L ++ +G L + +T G + +FI
Sbjct: 252 VGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLN 311
Query: 353 XXXXXXXVAMKAAGASRRVFQLLDRVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNH 412
+ A ++ R+F++LD + + L + GE+E +VWF+Y +
Sbjct: 312 ELSNQFNMIQMALASAERIFEILD-LEEEKDDPDAVELREVRGEIEFKNVWFSYDKKKP- 369
Query: 413 MVLKGITLKLLSGSKIALVGPSGGGKISIVS----------------------------- 443
VLK IT + G K+ALVGP+G GK +IV+
Sbjct: 370 -VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLR 428
Query: 444 -------QEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGE 496
Q+ +LF+ +++EN+ YG G A+ +I+ AAK+ ++ FI + PE Y+T + +
Sbjct: 429 SSIGIVLQDTILFSTTVKENLKYGNPG-ATDEEIKEAAKLTHSDHFIKHLPEGYETVLTD 487
Query: 497 RGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIA 556
G LS GQ+Q +AI RA + NP+IL+LDEATS +D ++E +Q AM LM+G+T ++IA
Sbjct: 488 NGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIA 547
Query: 557 HRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQ 599
HRL+T+++AD + V+ DGEIVE G H+EL+ K G Y L Q
Sbjct: 548 HRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRGFYYELFTSQ 590
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 246 bits (629), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 172/584 (29%), Positives = 282/584 (48%), Gaps = 53/584 (9%)
Query: 58 FGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAV 117
F R+ + L+++T+AL+I + + + ++D G+ E+ +
Sbjct: 13 FKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESN--------FL 64
Query: 118 RSTILSIFLIVIVGSVCTALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGEL 177
R I ++ V + ++ S S VV ++R+ LF+H ++ + F+D TG L
Sbjct: 65 RILPFMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGL 124
Query: 178 LSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLTLLALVVVPAISVAVRK 237
LSR++ D++ + A + L +R ++ L MF SW+L+L+ +VV P ++ A+
Sbjct: 125 LSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISF 184
Query: 238 FGRFLRELSHKTQXXXXXXXXXXEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQ 297
+ R++S Q E+ + V S+ ++ E R+ +KV +++ Q
Sbjct: 185 VSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRF-DKVSNSMRQ--QT 241
Query: 298 AKVVG---LFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFIXXXXXXXXXXXXX 354
K+V + + ++L++ V+ + +I +TPG T
Sbjct: 242 MKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKAL 301
Query: 355 XXXXXVAMKAAGASRRVFQLLDRVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMV 414
+ A + +F L+D + + + +GEV++ DV F Y +
Sbjct: 302 TSVTSEFQRGMAACQTLFGLMDLETE--RDNGKYEAERVNGEVDVKDVTFTYQGKEKP-A 358
Query: 415 LKGITLKLLSGSKIALVGPSGGGKISI--------------------------------- 441
L ++ + G +ALVG SG GK +I
Sbjct: 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRH 418
Query: 442 ---VSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERG 498
VSQ LFN +I NIAY +G+ + IE AA+ A+A +FI N P+ T +GE G
Sbjct: 419 FALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENG 478
Query: 499 VRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHR 558
LSGGQ+QRVAIARAL+ + +L+LDEATSALD ESE +Q A+D L K +TVLVIAHR
Sbjct: 479 TSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHR 538
Query: 559 LSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQE 602
LST++ AD + VV +GEI+E G H +LL++ G Y L + Q E
Sbjct: 539 LSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQLHRIQFGE 582
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 184 bits (466), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 113/275 (41%), Positives = 155/275 (56%), Gaps = 47/275 (17%)
Query: 371 VFQLLDR---VSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSK 427
+F LL V +P +G PL Q G +E ++V F+Y L+ ++ ++ G
Sbjct: 28 MFDLLKEETEVKDLPGAG---PLRFQKGRIEFENVHFSYAD--GRETLQDVSFTVMPGQT 82
Query: 428 IALVGPSGGGK------------------------------------ISIVSQEPVLFNC 451
+ALVGPSG GK I +V Q+ VLFN
Sbjct: 83 LALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFND 142
Query: 452 SIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAI 511
+I +NI YG A + ++E AA+ A HD I FPE Y+T VGERG++LSGG+KQRVAI
Sbjct: 143 TIADNIRYG-RVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAI 201
Query: 512 ARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVV 571
AR ++ P I+LLDEATSALD +E +Q ++ + RT +V+AHRLSTV +AD + V+
Sbjct: 202 ARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVI 261
Query: 572 SDGEIVESGTHEELLSKGGVYTALVKRQLQEPKTE 606
DG IVE G HE LLS+GGVY + QLQ+ + E
Sbjct: 262 KDGCIVERGRHEALLSRGGVYADMW--QLQQGQEE 294
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 184 bits (466), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 95/238 (39%), Positives = 142/238 (59%), Gaps = 36/238 (15%)
Query: 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------ 438
+E DV F+YP + NH LK I + SG+ ALVG +G GK
Sbjct: 18 IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIK 77
Query: 439 -----------------ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHD 481
I IV Q+ +LFN +I+ NI YG A+ ++ A K A +D
Sbjct: 78 IGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYG-KLDATDEEVIKATKSAQLYD 136
Query: 482 FISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQD 541
FI P+K+ T VG +G++LSGG++QR+AIAR L+ +P+I++ DEATS+LD+++EYL Q
Sbjct: 137 FIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQK 196
Query: 542 AMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQ 599
A++ L K RT+++IAHRLST+ SA+++ +++ G+IVE GTH++LL G Y + Q
Sbjct: 197 AVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEMWNMQ 254
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 179 bits (454), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 103/254 (40%), Positives = 140/254 (55%), Gaps = 39/254 (15%)
Query: 382 PKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK--- 438
P SG+ PL + G V+ DV FAYP+ PN VL+G+T L G ALVGP+G GK
Sbjct: 3 PLSGSLAPL-NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTV 61
Query: 439 ---------------------------------ISIVSQEPVLFNCSIEENIAYGCDGKA 465
++ V QEP+LF S ENIAYG
Sbjct: 62 AALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTP 121
Query: 466 SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLD 525
+ +I A + AHDFIS FP+ Y T VGE G +LSGGQ+Q VA+ARAL+ PR+L+LD
Sbjct: 122 TMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILD 181
Query: 526 EATSALDAESEYLVQDAM--DSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHE 583
+ATSALDA ++ VQ + RTVL+I H+LS + A + + +G + E GTH
Sbjct: 182 QATSALDAGNQLRVQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHL 241
Query: 584 ELLSKGGVYTALVK 597
+L+ +GG Y ++V+
Sbjct: 242 QLMERGGCYRSMVE 255
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 177 bits (450), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 96/233 (41%), Positives = 131/233 (56%), Gaps = 38/233 (16%)
Query: 404 FAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------- 438
FAY + +L+ I+ + S IA GPSGGGK
Sbjct: 9 FAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPI 66
Query: 439 -----------ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFP 487
I VSQ+ + +I EN+ YG +G + D+ +A A F+ N P
Sbjct: 67 DNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMP 126
Query: 488 EKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM 547
++ T VGERGV++SGGQ+QR+AIARA + NP+IL+LDEAT++LD+ESE +VQ A+DSLM
Sbjct: 127 DQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM 186
Query: 548 KGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQL 600
KGRT LVIAHRLST+ AD + + G+I SG H EL++ +Y V QL
Sbjct: 187 KGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSEQL 239
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 176 bits (447), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 148/580 (25%), Positives = 269/580 (46%), Gaps = 64/580 (11%)
Query: 66 KPDAGKLIIATVALLIASVSSILIPKFGGKIID--IVSGDTETPEQKAEALAAVRSTILS 123
KP ++A + +++ + + P +I+D I GD + V T +
Sbjct: 19 KPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGD----------FSLVLKTGIL 68
Query: 124 IFLIVIVGSV----CTALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLS 179
+ ++ ++G+V CT ++ AS+ A LR++LF +++ I+ + T L++
Sbjct: 69 MLIVALIGAVGGIGCTVFASY----ASQNFGADLRRDLFRKVLSFSISNVNRFHTSSLIT 124
Query: 180 RLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSW--KLTLLALVVVPAISVAVRK 237
RL+ D ++N L +R F+G G + A S KL+ + + ++P I +
Sbjct: 125 RLTNDVTQLQNLVMMLLRIVVRA-PLLFVG-GIVMAVSINVKLSSVLIFLIPPIVLLFVW 182
Query: 238 FGRFLRELSHKTQXXXXXXXXXXEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQ 297
+ L K Q E+ +R VR+F +E+ E + K +E+L+ +
Sbjct: 183 LTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENF-RKANESLRRSIIS 241
Query: 298 AKVVGLFFGGLNA-ASTLSVIVVVIYGANLTITGSMTPGALTSFIXXXXXXXXXXXXXXX 356
A + +F L + +I V+ +G L M G++ ++
Sbjct: 242 AFSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGN 301
Query: 357 XXXVAMKAAGASRRVFQLLDRVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLK 416
++A+ +++RV ++L+ ++ ++ N L + +G V ++V F Y + VL
Sbjct: 302 ILNFIVRASASAKRVLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRYFENTDP-VLS 360
Query: 417 GITLKLLSGSKIALVGPSGGGK------------------------------------IS 440
G+ + GS +A++G +G GK IS
Sbjct: 361 GVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHIS 420
Query: 441 IVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVR 500
V QE VLF+ +I+EN+ +G + A+ +I AAK+A HDFI + PE Y + V G
Sbjct: 421 AVPQETVLFSGTIKENLKWGRE-DATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRN 479
Query: 501 LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLS 560
SGGQKQR++IARAL+ P++L+LD+ TS++D +E + D + KG T +I ++
Sbjct: 480 FSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIP 539
Query: 561 TVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQL 600
T AD + V+ +G++ GTH+ELL Y + + Q
Sbjct: 540 TALLADKILVLHEGKVAGFGTHKELLEHCKPYREIYESQF 579
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 175 bits (443), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 102/254 (40%), Positives = 138/254 (54%), Gaps = 39/254 (15%)
Query: 382 PKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK--- 438
P SG+ PL + G V+ DV FAYP+ PN VL+G+T L G ALVGP+G GK
Sbjct: 3 PLSGSLAPL-NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTV 61
Query: 439 ---------------------------------ISIVSQEPVLFNCSIEENIAYGCDGKA 465
++ V QEP+LF S ENIAYG
Sbjct: 62 AALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTP 121
Query: 466 SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLD 525
+ +I A + AHDFIS FP+ Y T VGE G +LSGGQ+Q VA+ARAL+ PR+L+LD
Sbjct: 122 TMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILD 181
Query: 526 EATSALDAESEYLVQDAM--DSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHE 583
ATSALDA ++ VQ + RTVL+I +LS + A + + +G + E GTH
Sbjct: 182 NATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHL 241
Query: 584 ELLSKGGVYTALVK 597
+L+ +GG Y ++V+
Sbjct: 242 QLMERGGCYRSMVE 255
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 170 bits (431), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 100/254 (39%), Positives = 137/254 (53%), Gaps = 39/254 (15%)
Query: 382 PKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK--- 438
P SG+ PL + G V+ DV FAYP+ PN VL+G+T L G ALVGP+G GK
Sbjct: 3 PLSGSLAPL-NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTV 61
Query: 439 ---------------------------------ISIVSQEPVLFNCSIEENIAYGCDGKA 465
++ V QEP+LF S ENIAYG
Sbjct: 62 AALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTP 121
Query: 466 SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLD 525
+ +I A + AHDFIS FP+ Y T VGE G +L+ GQ+Q VA+ARAL+ PR+L+LD
Sbjct: 122 TMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILD 181
Query: 526 EATSALDAESEYLVQDAM--DSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHE 583
ATSALDA ++ VQ + RTVL+I +LS + A + + +G + E GTH
Sbjct: 182 NATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHL 241
Query: 584 ELLSKGGVYTALVK 597
+L+ +GG Y ++V+
Sbjct: 242 QLMERGGCYRSMVE 255
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 169 bits (428), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 103/261 (39%), Positives = 141/261 (54%), Gaps = 39/261 (14%)
Query: 382 PKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK--- 438
P SG PL +G V+ DV FAYP+RP+ +VL+G+T L G ALVGP+G GK
Sbjct: 1 PPSGLLTPL-HLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTV 59
Query: 439 ---------------------------------ISIVSQEPVLFNCSIEENIAYGCDGKA 465
++ V QEP +F S++ENIAYG K
Sbjct: 60 AALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKP 119
Query: 466 SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLD 525
+ +I AA + AH FIS P+ Y T V E G +LSGGQ+Q VA+ARAL+ P +L+LD
Sbjct: 120 TMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILD 179
Query: 526 EATSALDAESEYLVQDAM--DSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHE 583
+ATSALDA S+ V+ + R+VL+I LS V+ AD + + G I E GTH+
Sbjct: 180 DATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQ 239
Query: 584 ELLSKGGVYTALVKRQLQEPK 604
+L+ K G Y A+V+ P+
Sbjct: 240 QLMEKKGCYWAMVQAPADAPE 260
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 166 bits (419), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 101/242 (41%), Positives = 138/242 (57%), Gaps = 41/242 (16%)
Query: 396 EVELDDVWFAY-PSRPNHMVLKGITLKLLSGSKIALVGPSGGGK---------------- 438
++ ++ F Y P P ++L I L + G I +VG SG GK
Sbjct: 1 DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 58
Query: 439 --------------------ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMAN 478
+ +V Q+ VL N SI +NI+ G S + AAK+A
Sbjct: 59 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPG-MSVEKVIYAAKLAG 117
Query: 479 AHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYL 538
AHDFIS E Y T VGE+G LSGGQ+QR+AIARAL+ NP+IL+ DEATSALD ESE++
Sbjct: 118 AHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 177
Query: 539 VQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKG-GVYTALVK 597
+ M + KGRTV++IAHRLSTV++AD + V+ G+IVE G H+ELLS+ +Y+ L +
Sbjct: 178 IMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 237
Query: 598 RQ 599
Q
Sbjct: 238 LQ 239
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 166 bits (419), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 101/242 (41%), Positives = 138/242 (57%), Gaps = 41/242 (16%)
Query: 396 EVELDDVWFAY-PSRPNHMVLKGITLKLLSGSKIALVGPSGGGK---------------- 438
++ ++ F Y P P ++L I L + G I +VG SG GK
Sbjct: 7 DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 439 --------------------ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMAN 478
+ +V Q+ VL N SI +NI+ G S + AAK+A
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPG-MSVEKVIYAAKLAG 123
Query: 479 AHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYL 538
AHDFIS E Y T VGE+G LSGGQ+QR+AIARAL+ NP+IL+ DEATSALD ESE++
Sbjct: 124 AHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 183
Query: 539 VQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKG-GVYTALVK 597
+ M + KGRTV++IAHRLSTV++AD + V+ G+IVE G H+ELLS+ +Y+ L +
Sbjct: 184 IMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 243
Query: 598 RQ 599
Q
Sbjct: 244 LQ 245
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 166 bits (419), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 101/242 (41%), Positives = 138/242 (57%), Gaps = 41/242 (16%)
Query: 396 EVELDDVWFAY-PSRPNHMVLKGITLKLLSGSKIALVGPSGGGK---------------- 438
++ ++ F Y P P ++L I L + G I +VG SG GK
Sbjct: 3 DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 60
Query: 439 --------------------ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMAN 478
+ +V Q+ VL N SI +NI+ G S + AAK+A
Sbjct: 61 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPG-MSVEKVIYAAKLAG 119
Query: 479 AHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYL 538
AHDFIS E Y T VGE+G LSGGQ+QR+AIARAL+ NP+IL+ DEATSALD ESE++
Sbjct: 120 AHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 179
Query: 539 VQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKG-GVYTALVK 597
+ M + KGRTV++IAHRLSTV++AD + V+ G+IVE G H+ELLS+ +Y+ L +
Sbjct: 180 IMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 239
Query: 598 RQ 599
Q
Sbjct: 240 LQ 241
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 165 bits (418), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 91/180 (50%), Positives = 124/180 (68%), Gaps = 3/180 (1%)
Query: 422 LLSGSKIALVGPSG-GGKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAH 480
L+ G +AL P+ ++ +V Q+ VL N SI +NI+ G S + AAK+A AH
Sbjct: 63 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPG-MSVEKVIYAAKLAGAH 121
Query: 481 DFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQ 540
DFIS E Y T VGE+G LSGGQ+QR+AIARAL+ NP+IL+ DEATSALD ESE+++
Sbjct: 122 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 181
Query: 541 DAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKG-GVYTALVKRQ 599
M + KGRTV++IAHRLSTV++AD + V+ G+IVE G H+ELLS+ +Y+ L + Q
Sbjct: 182 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 241
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 164 bits (416), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 100/242 (41%), Positives = 138/242 (57%), Gaps = 41/242 (16%)
Query: 396 EVELDDVWFAY-PSRPNHMVLKGITLKLLSGSKIALVGPSGGGK---------------- 438
++ ++ F Y P P ++L I L + G I +VG SG GK
Sbjct: 7 DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 439 --------------------ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMAN 478
+ +V Q+ VL N SI +NI+ G S + AAK+A
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPG-MSVEKVIYAAKLAG 123
Query: 479 AHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYL 538
AHDFIS E Y T VGE+G LSGGQ+QR+AIARAL+ NP+IL+ D+ATSALD ESE++
Sbjct: 124 AHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHV 183
Query: 539 VQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKG-GVYTALVK 597
+ M + KGRTV++IAHRLSTV++AD + V+ G+IVE G H+ELLS+ +Y+ L +
Sbjct: 184 IMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 243
Query: 598 RQ 599
Q
Sbjct: 244 LQ 245
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 161 bits (408), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 100/242 (41%), Positives = 137/242 (56%), Gaps = 41/242 (16%)
Query: 396 EVELDDVWFAY-PSRPNHMVLKGITLKLLSGSKIALVGPSGGGK---------------- 438
++ ++ F Y P P ++L I L + G I +VG SG GK
Sbjct: 1 DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 58
Query: 439 --------------------ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMAN 478
+ +V Q+ VL N SI +NI+ G S + AAK+A
Sbjct: 59 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPG-MSVEKVIYAAKLAG 117
Query: 479 AHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYL 538
AHDFIS E Y T VGE+G LSGGQ+QR+AIARAL+ NP+IL+ DEATSALD ESE++
Sbjct: 118 AHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 177
Query: 539 VQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKG-GVYTALVK 597
+ M + KGRTV++IA RLSTV++AD + V+ G+IVE G H+ELLS+ +Y+ L +
Sbjct: 178 IMRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 237
Query: 598 RQ 599
Q
Sbjct: 238 LQ 239
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 161 bits (408), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 100/242 (41%), Positives = 137/242 (56%), Gaps = 41/242 (16%)
Query: 396 EVELDDVWFAY-PSRPNHMVLKGITLKLLSGSKIALVGPSGGGK---------------- 438
++ ++ F Y P P ++L I L + G I +VG SG GK
Sbjct: 7 DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 439 --------------------ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMAN 478
+ +V Q+ VL N SI +NI+ G S + AAK+A
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPG-MSVEKVIYAAKLAG 123
Query: 479 AHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYL 538
AHDFIS E Y T VGE+G LSGGQ+QR+AIARAL+ NP+IL+ DEATSALD ESE++
Sbjct: 124 AHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 183
Query: 539 VQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKG-GVYTALVK 597
+ M + KGRTV++IA RLSTV++AD + V+ G+IVE G H+ELLS+ +Y+ L +
Sbjct: 184 IMRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 243
Query: 598 RQ 599
Q
Sbjct: 244 LQ 245
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 116/218 (53%), Gaps = 32/218 (14%)
Query: 408 SRPNHMVLKGITLKLLSGSKIALVGPSGGGKISIVS-----------------------Q 444
+R + L GIT + G+ +A+VG G GK S++S Q
Sbjct: 14 ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQ 73
Query: 445 EPVLFNCSIEENIAYGC--DGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLS 502
+ + N S+ ENI +GC + + I+ A + + + P +T +GE+GV LS
Sbjct: 74 QAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPD----LEILPSGDRTEIGEKGVNLS 129
Query: 503 GGQKQRVAIARALMMNPRILLLDEATSALDAE-SEYLVQDAM--DSLMKGRTVLVIAHRL 559
GGQKQRV++ARA+ N I L D+ SA+DA +++ ++ + ++K +T +++ H +
Sbjct: 130 GGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSM 189
Query: 560 STVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVK 597
S + D + V+S G+I E G+++ELL++ G + ++
Sbjct: 190 SYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFLR 227
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 103/221 (46%), Gaps = 54/221 (24%)
Query: 411 NHMVLKGITLKLLSGSKIALVGPSGGGK-------------------------------- 438
N L I LK+ G +AL+GPSG GK
Sbjct: 15 NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKD 74
Query: 439 --ISIVSQEPVLF-NCSIEENIAYGCD-GKASSADIEN----AAKMANAHDFISNFPEKY 490
+ +V Q L+ + ++ +NIA+ + KA +I+ AKM + ++ +P
Sbjct: 75 RNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYP--- 131
Query: 491 QTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK-- 548
+LSGGQ+QRVAIARAL+ P +LLLDE S LDA V+ + L K
Sbjct: 132 --------WQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKEL 183
Query: 549 GRTVLVIAH-RLSTVQSADTVAVVSDGEIVESGTHEELLSK 588
G T + + H + + AD +AV+ +GEI++ GT +E+ K
Sbjct: 184 GITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYK 224
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/90 (48%), Positives = 61/90 (67%), Gaps = 3/90 (3%)
Query: 501 LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHR 558
LSGGQKQRVAIARAL NP++LL DEATSALD + + + + + + G T+L+I H
Sbjct: 141 LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHE 200
Query: 559 LSTVQS-ADTVAVVSDGEIVESGTHEELLS 587
+ V+ D VAV+S+GE++E T E+ S
Sbjct: 201 MDVVKRICDCVAVISNGELIEQDTVSEVFS 230
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 104/213 (48%), Gaps = 49/213 (23%)
Query: 415 LKGITLKLLSGSKIALVGPSGGGK----------------------------------IS 440
L ++LK+ SG ++GP+G GK I+
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIA 75
Query: 441 IVSQEPVLF-NCSIEENIAYGCDGKASSADIENAAKMAN-AHDFISNFPEKYQTFVGERG 498
V Q LF + ++++N+ +G K I++ ++ + A D K + +
Sbjct: 76 FVYQNYSLFPHMNVKKNLEFGMRMKK----IKDPKRVLDTARDL------KIEHLLDRNP 125
Query: 499 VRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGR--TVLVIA 556
+ LSGG++QRVA+ARAL+ NP+ILLLDE SALD ++ ++ + L K TVL I
Sbjct: 126 LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHIT 185
Query: 557 HRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 588
H + + AD +AVV DG++++ G EE+ K
Sbjct: 186 HDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 61/90 (67%), Gaps = 3/90 (3%)
Query: 501 LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHR 558
LSGGQKQRVAIARAL NP++LL D+ATSALD + + + + + + G T+L+I H
Sbjct: 164 LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHE 223
Query: 559 LSTVQS-ADTVAVVSDGEIVESGTHEELLS 587
+ V+ D VAV+S+GE++E T E+ S
Sbjct: 224 MDVVKRICDCVAVISNGELIEQDTVSEVFS 253
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 95/176 (53%), Gaps = 28/176 (15%)
Query: 423 LSGSKIALVGPSGGGKISIVSQEPVLF-NCSIEENIAYGCDGKASSAD-----IENAAKM 476
L S L+ P KI +V Q L+ N + ENIA+ S + +E AK+
Sbjct: 68 LVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKI 127
Query: 477 ANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESE 536
+ H +++FP + LSGGQ+QRVA+ARAL+ +P +LLLDE S LDA
Sbjct: 128 LDIHHVLNHFPRE-----------LSGGQQQRVALARALVKDPSLLLLDEPFSNLDAR-- 174
Query: 537 YLVQDAMDSLMK------GRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEEL 585
++D+ +L+K G T+LV++H + + + AD V V+ G++V+ G E+L
Sbjct: 175 --MRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 101/221 (45%), Gaps = 26/221 (11%)
Query: 391 GDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------ 438
GD+ + ++V F++ + VLK I L + G +A+ G +G GK
Sbjct: 30 GDRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE 89
Query: 439 -----------ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFP 487
+S SQ + +I+ENI +G ++ K I+ F
Sbjct: 90 ASEGIIKHSGRVSFCSQFSWIMPGTIKENIIFGV--SYDEYRYKSVVKACQLQQDITKFA 147
Query: 488 EKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLV-QDAMDSL 546
E+ T +GE GV LSGGQ+ R+++ARA+ + + LLD LD +E V + + L
Sbjct: 148 EQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKL 207
Query: 547 MKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLS 587
M +T +++ ++ ++ AD + ++ G GT EL S
Sbjct: 208 MANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQS 248
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 101/221 (45%), Gaps = 26/221 (11%)
Query: 391 GDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------ 438
GD+ + ++V F++ + VLK I L + G +A+ G +G GK
Sbjct: 30 GDRKHXSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE 89
Query: 439 -----------ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFP 487
+S SQ + +I+ENI +G ++ K I+ F
Sbjct: 90 ASEGIIKHSGRVSFCSQFSWIMPGTIKENIIFGV--SYDEYRYKSVVKACQLQQDITKFA 147
Query: 488 EKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLV-QDAMDSL 546
E+ T +GE GV LSGGQ+ R+++ARA+ + + LLD LD +E V + + L
Sbjct: 148 EQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKL 207
Query: 547 MKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLS 587
M +T +++ ++ ++ AD + ++ G GT EL S
Sbjct: 208 MANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQS 248
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 60/90 (66%), Gaps = 3/90 (3%)
Query: 501 LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHR 558
LSGGQKQRVAIARAL NP++LL D+ATSALD + + + + + + G T+L+I H
Sbjct: 164 LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHE 223
Query: 559 LSTVQS-ADTVAVVSDGEIVESGTHEELLS 587
V+ D VAV+S+GE++E T E+ S
Sbjct: 224 XDVVKRICDCVAVISNGELIEQDTVSEVFS 253
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 89/173 (51%), Gaps = 21/173 (12%)
Query: 423 LSGSKIALVGPSGGGKISIVSQEPVLF-NCSIEENIAYGCDGKASSADIENAAKMAN--- 478
L+G+ I + P G I V Q+ LF + S+ NIAYG +MA
Sbjct: 57 LNGADITPLPPERRG-IGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLG 115
Query: 479 -AHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEY 537
AH + + RLSGG++QRVA+ARAL++ PR+LLLDE SA+D +++
Sbjct: 116 IAH------------LLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKG 163
Query: 538 LVQDAMDSLMK--GRTVLVIAHRL-STVQSADTVAVVSDGEIVESGTHEELLS 587
++ + + + + +L + H L AD VAV+ +G IVE G +EL S
Sbjct: 164 VLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFS 216
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 100/221 (45%), Gaps = 26/221 (11%)
Query: 391 GDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------ 438
GD+ + ++V F++ + VLK I L + G +A+ G +G GK
Sbjct: 30 GDRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE 89
Query: 439 -----------ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFP 487
+S SQ + +I+ENI G ++ K I+ F
Sbjct: 90 ASEGIIKHSGRVSFCSQFSWIMPGTIKENIIRGV--SYDEYRYKSVVKACQLQQDITKFA 147
Query: 488 EKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLV-QDAMDSL 546
E+ T +GE GV LSGGQ+ R+++ARA+ + + LLD LD +E V + + L
Sbjct: 148 EQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKL 207
Query: 547 MKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLS 587
M +T +++ ++ ++ AD + ++ G GT EL S
Sbjct: 208 MANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQS 248
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 100/221 (45%), Gaps = 26/221 (11%)
Query: 391 GDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------ 438
GD+ + ++V F++ + VLK I L + G +A+ G +G GK
Sbjct: 30 GDRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE 89
Query: 439 -----------ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFP 487
+S SQ + +I+ENI G ++ K I+ F
Sbjct: 90 ASEGIIKHSGRVSFCSQFSWIMPGTIKENIISGV--SYDEYRYKSVVKACQLQQDITKFA 147
Query: 488 EKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLV-QDAMDSL 546
E+ T +GE GV LSGGQ+ R+++ARA+ + + LLD LD +E V + + L
Sbjct: 148 EQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKL 207
Query: 547 MKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLS 587
M +T +++ ++ ++ AD + ++ G GT EL S
Sbjct: 208 MANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQS 248
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 94/176 (53%), Gaps = 28/176 (15%)
Query: 423 LSGSKIALVGPSGGGKISIVSQEPVLF-NCSIEENIAYGCDGKASSAD-----IENAAKM 476
L S L+ P KI +V Q L+ N + ENIA+ S + +E AK+
Sbjct: 68 LVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKI 127
Query: 477 ANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESE 536
+ H +++FP + LSG Q+QRVA+ARAL+ +P +LLLDE S LDA
Sbjct: 128 LDIHHVLNHFPRE-----------LSGAQQQRVALARALVKDPSLLLLDEPFSNLDAR-- 174
Query: 537 YLVQDAMDSLMK------GRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEEL 585
++D+ +L+K G T+LV++H + + + AD V V+ G++V+ G E+L
Sbjct: 175 --MRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 96/211 (45%), Gaps = 36/211 (17%)
Query: 414 VLKGITLKLLSGSKIALVGPSGGGKISIVSQEPVLFNCSIEENIAYGCDGKASSADIE-- 471
VLKGI + + G + ++GPSG GK + + +L + E I G + KA ++
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 472 -----------NAAKMANAHDFISNFPEKYQTFVGER------------GVR-------- 500
N + I+ P K + + E+ G++
Sbjct: 99 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPD 158
Query: 501 -LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHR 558
LSGGQ QRVAIARAL M P+I+L DE TSALD E V M L +G T++V+ H
Sbjct: 159 SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHE 218
Query: 559 LSTVQS-ADTVAVVSDGEIVESGTHEELLSK 588
+ + D V + G I+E G E+L +
Sbjct: 219 MGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 96/211 (45%), Gaps = 36/211 (17%)
Query: 414 VLKGITLKLLSGSKIALVGPSGGGKISIVSQEPVLFNCSIEENIAYGCDGKASSADIE-- 471
VLKGI + + G + ++GPSG GK + + +L + E I G + KA ++
Sbjct: 18 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 77
Query: 472 -----------NAAKMANAHDFISNFPEKYQTFVGER------------GVR-------- 500
N + I+ P K + + E+ G++
Sbjct: 78 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPD 137
Query: 501 -LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHR 558
LSGGQ QRVAIARAL M P+I+L DE TSALD E V M L +G T++V+ H
Sbjct: 138 SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHE 197
Query: 559 LSTVQS-ADTVAVVSDGEIVESGTHEELLSK 588
+ + D V + G I+E G E+L +
Sbjct: 198 MGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 228
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 89/196 (45%), Gaps = 26/196 (13%)
Query: 414 VLKGITLKLLSGSKIALVGPSGGGK-----------------------ISIVSQEPVLFN 450
VLK I K+ G +A+ G +G GK IS SQ +
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMP 94
Query: 451 CSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVA 510
+I+ENI +G + K + IS F EK +GE G+ LSGGQ+ R++
Sbjct: 95 GTIKENIIFGVS--YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARIS 152
Query: 511 IARALMMNPRILLLDEATSALDAESEY-LVQDAMDSLMKGRTVLVIAHRLSTVQSADTVA 569
+ARA+ + + LLD LD +E + + + LM +T +++ ++ ++ AD +
Sbjct: 153 LARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKIL 212
Query: 570 VVSDGEIVESGTHEEL 585
++ +G GT EL
Sbjct: 213 ILHEGSSYFYGTFSEL 228
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 89/196 (45%), Gaps = 26/196 (13%)
Query: 414 VLKGITLKLLSGSKIALVGPSGGGK-----------------------ISIVSQEPVLFN 450
VLK I K+ G +A+ G +G GK IS SQ +
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMP 82
Query: 451 CSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVA 510
+I+ENI +G + K + IS F EK +GE G+ LSGGQ+ R++
Sbjct: 83 GTIKENIIFGVS--YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARIS 140
Query: 511 IARALMMNPRILLLDEATSALDAESEY-LVQDAMDSLMKGRTVLVIAHRLSTVQSADTVA 569
+ARA+ + + LLD LD +E + + + LM +T +++ ++ ++ AD +
Sbjct: 141 LARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKIL 200
Query: 570 VVSDGEIVESGTHEEL 585
++ +G GT EL
Sbjct: 201 ILHEGSSYFYGTFSEL 216
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 101/224 (45%), Gaps = 33/224 (14%)
Query: 391 GDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------ 438
GD+ + ++V F++ + VLK I L + G +A+ G +G GK
Sbjct: 30 GDRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE 89
Query: 439 -----------ISIVSQEPVLFNCSIEENIAYGCDGKASSAD---IENAAKMANAHDFIS 484
+S SQ + +I+ENI S D ++ K I+
Sbjct: 90 ASEGIIKHSGRVSFCSQFSWIMPGTIKENII------GVSYDEYRYKSVVKACQLQQDIT 143
Query: 485 NFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLV-QDAM 543
F E+ T +GE GV LSGGQ+ R+++ARA+ + + LLD LD +E V + +
Sbjct: 144 KFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCV 203
Query: 544 DSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLS 587
LM +T +++ ++ ++ AD + ++ G GT EL S
Sbjct: 204 CKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQS 247
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 96/221 (43%), Gaps = 58/221 (26%)
Query: 415 LKGITLKLLSGSKIALVGPSGGGKISI--------------------------------- 441
++G++ ++ G + L+GPSG GK +I
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVG 90
Query: 442 -VSQEPVLF-NCSIEENIAYGCDGKASSAD-----IENAAKMANAHDFISNFPEKYQTFV 494
V Q LF + ++ +N+++G K D + + + + FP +
Sbjct: 91 LVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHE----- 145
Query: 495 GERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDA----ESEYLVQDAMDSLMKGR 550
LSGGQ+QRVA+ARAL P++LL DE +A+D E V+ D + G
Sbjct: 146 ------LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEM--GV 197
Query: 551 TVLVIAH-RLSTVQSADTVAVVSDGEIVESGTHEELLSKGG 590
T + + H + ++ AD V V+ +G + + GT EE+ K G
Sbjct: 198 TSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPG 238
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 88/196 (44%), Gaps = 26/196 (13%)
Query: 414 VLKGITLKLLSGSKIALVGPSGGGK-----------------------ISIVSQEPVLFN 450
VLK I K+ G +A+ G +G GK IS SQ +
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMP 112
Query: 451 CSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVA 510
+I+ENI G + K + IS F EK +GE G+ LSGGQ+ R++
Sbjct: 113 GTIKENIIAGV--SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARIS 170
Query: 511 IARALMMNPRILLLDEATSALDAESEY-LVQDAMDSLMKGRTVLVIAHRLSTVQSADTVA 569
+ARA+ + + LLD LD +E + + + LM +T +++ ++ ++ AD +
Sbjct: 171 LARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKIL 230
Query: 570 VVSDGEIVESGTHEEL 585
++ +G GT EL
Sbjct: 231 ILHEGSSYFYGTFSEL 246
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 95/213 (44%), Gaps = 33/213 (15%)
Query: 400 DDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK--------------------- 438
D ++F+ S VLK I K+ G +A+ G +G GK
Sbjct: 39 DSLFFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS 98
Query: 439 --ISIVSQEPVLFNCSIEENIAYGCDGKASSAD---IENAAKMANAHDFISNFPEKYQTF 493
IS SQ + +I+ENI S D + K + IS F EK
Sbjct: 99 GRISFCSQNSWIMPGTIKENII------GVSYDEYRYRSVIKACQLEEDISKFAEKDNIV 152
Query: 494 VGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEY-LVQDAMDSLMKGRTV 552
+GE G+ LSGGQ+ R+++ARA+ + + LLD LD +E + + + LM +T
Sbjct: 153 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTR 212
Query: 553 LVIAHRLSTVQSADTVAVVSDGEIVESGTHEEL 585
+++ ++ ++ AD + ++ +G GT EL
Sbjct: 213 ILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 245
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 89/199 (44%), Gaps = 33/199 (16%)
Query: 414 VLKGITLKLLSGSKIALVGPSGGGK-----------------------ISIVSQEPVLFN 450
VLK I K+ G +A+ G +G GK IS SQ +
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMP 112
Query: 451 CSIEENIAYGCDGKASSAD---IENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQ 507
+I+ENI S D + K + IS F EK +GE G+ LSGGQ+
Sbjct: 113 GTIKENII------GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRA 166
Query: 508 RVAIARALMMNPRILLLDEATSALDAESEY-LVQDAMDSLMKGRTVLVIAHRLSTVQSAD 566
R+++ARA+ + + LLD LD +E + + + LM +T +++ ++ ++ AD
Sbjct: 167 RISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKAD 226
Query: 567 TVAVVSDGEIVESGTHEEL 585
+ ++ +G GT EL
Sbjct: 227 KILILHEGSSYFYGTFSEL 245
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 89/199 (44%), Gaps = 33/199 (16%)
Query: 414 VLKGITLKLLSGSKIALVGPSGGGK-----------------------ISIVSQEPVLFN 450
VLK I K+ G +A+ G +G GK IS SQ +
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMP 82
Query: 451 CSIEENIAYGCDGKASSAD---IENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQ 507
+I+ENI S D + K + IS F EK +GE G+ LSGGQ+
Sbjct: 83 GTIKENII------GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRA 136
Query: 508 RVAIARALMMNPRILLLDEATSALDAESEY-LVQDAMDSLMKGRTVLVIAHRLSTVQSAD 566
R+++ARA+ + + LLD LD +E + + + LM +T +++ ++ ++ AD
Sbjct: 137 RISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKAD 196
Query: 567 TVAVVSDGEIVESGTHEEL 585
+ ++ +G GT EL
Sbjct: 197 KILILHEGSSYFYGTFSEL 215
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 88/196 (44%), Gaps = 26/196 (13%)
Query: 414 VLKGITLKLLSGSKIALVGPSGGGK-----------------------ISIVSQEPVLFN 450
VLK I K+ G +A+ G +G GK IS SQ +
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMP 112
Query: 451 CSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVA 510
+I+ENI +G + K + IS F EK +GE G+ LS GQ+ +++
Sbjct: 113 GTIKENIIFGV--SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSEGQQAKIS 170
Query: 511 IARALMMNPRILLLDEATSALDAESEY-LVQDAMDSLMKGRTVLVIAHRLSTVQSADTVA 569
+ARA+ + + LLD LD +E + + + LM +T +++ ++ ++ AD +
Sbjct: 171 LARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKIL 230
Query: 570 VVSDGEIVESGTHEEL 585
++ +G GT EL
Sbjct: 231 ILHEGSSYFYGTFSEL 246
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 101/211 (47%), Gaps = 46/211 (21%)
Query: 414 VLKGITLKLLSGSKIALVGPSGGGKISI---------------------VSQEP----VL 448
+LKGI+ ++ G L+GP+G GK + V +EP L
Sbjct: 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKL 89
Query: 449 FNCSIEENIAY-GCDG-----------KASSADIENAAKMANAHDFISNFPEKYQTFVGE 496
+ EE AY G +SS++IE + A I+ EK + +
Sbjct: 90 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATE---IAGLGEK----IKD 142
Query: 497 RGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAM-DSLMKGRTVLVI 555
R S G +++ IARALM+NPR+ +LDE TS LD + V+ + + +G T+LV
Sbjct: 143 RVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVS 202
Query: 556 AHRLSTVQS-ADTVAVVSDGEIVESGTHEEL 585
+H + V+ D +A++ +G IVE+GT EEL
Sbjct: 203 SHNMLEVEFLCDRIALIHNGTIVETGTVEEL 233
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 99/213 (46%), Gaps = 56/213 (26%)
Query: 417 GITLKLLSGSKIALVGPSGGGK----------------------------------ISIV 442
G++ ++ G +AL+GPSG GK + +V
Sbjct: 21 GVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMV 80
Query: 443 SQEPVLF-NCSIEENIAYGCDGKASSAD------IENAAKMANAHDFISNFPEKYQTFVG 495
Q L+ + ++ ENIA+ + S D +E A K+ I N ++ T
Sbjct: 81 FQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKL-----LIDNLLDRKPT--- 132
Query: 496 ERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVL 553
+LSGGQ+QRVA+ARAL+ P++LL DE S LDA +++ + L + G T +
Sbjct: 133 ----QLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSV 188
Query: 554 VIAH-RLSTVQSADTVAVVSDGEIVESGTHEEL 585
+ H + + A +AV + G++V+ GT +E+
Sbjct: 189 YVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEV 221
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 55/88 (62%), Gaps = 2/88 (2%)
Query: 491 QTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK-- 548
+ F + +LSGGQ+QRVAIARAL NP I+L DE T ALD+++ + + L +
Sbjct: 136 ERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEED 195
Query: 549 GRTVLVIAHRLSTVQSADTVAVVSDGEI 576
G+TV+V+ H ++ + + + + DGE+
Sbjct: 196 GKTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 89/172 (51%), Gaps = 21/172 (12%)
Query: 433 PSGGGKISIVSQEPVLF-NCSIEENIAYGCDGKASSAD-----IENAAKMANAHDFISNF 486
P IS+V Q ++ + ++ ENIA+ K D + AA++ + ++ +
Sbjct: 79 PPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRY 138
Query: 487 PEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSL 546
P +LSGGQ+QRVA+ARA+++ P +LL+DE S LDA+ ++ + L
Sbjct: 139 P-----------AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKL 187
Query: 547 ---MKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEEL-LSKGGVYTA 594
+K T+ V ++ + D +AV++ G++++ G+ E+ L V+ A
Sbjct: 188 QQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVA 239
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 89/172 (51%), Gaps = 21/172 (12%)
Query: 433 PSGGGKISIVSQEPVLF-NCSIEENIAYGCDGKASSAD-----IENAAKMANAHDFISNF 486
P IS+V Q ++ + ++ ENIA+ K D + AA++ + ++ +
Sbjct: 80 PPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRY 139
Query: 487 PEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSL 546
P +LSGGQ+QRVA+ARA+++ P +LL+DE S LDA+ ++ + L
Sbjct: 140 P-----------AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKL 188
Query: 547 ---MKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEEL-LSKGGVYTA 594
+K T+ V ++ + D +AV++ G++++ G+ E+ L V+ A
Sbjct: 189 QQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVA 240
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 56/94 (59%), Gaps = 2/94 (2%)
Query: 495 GERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVL 553
G+ V LSGGQ+QRV+IARAL M P +LL DE TSALD E V M L +G+T++
Sbjct: 148 GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMV 207
Query: 554 VIAHRLSTVQSADT-VAVVSDGEIVESGTHEELL 586
V+ H + + + V + G+I E G E++
Sbjct: 208 VVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVF 241
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 55/88 (62%), Gaps = 2/88 (2%)
Query: 491 QTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK-- 548
+ F + +LSGGQ+QRVAIARAL NP I+L D+ T ALD+++ + + L +
Sbjct: 136 ERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEED 195
Query: 549 GRTVLVIAHRLSTVQSADTVAVVSDGEI 576
G+TV+V+ H ++ + + + + DGE+
Sbjct: 196 GKTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 55/88 (62%), Gaps = 2/88 (2%)
Query: 491 QTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK-- 548
+ F + +LSGGQ+QRVAIARAL NP I+L D+ T ALD+++ + + L +
Sbjct: 136 ERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEED 195
Query: 549 GRTVLVIAHRLSTVQSADTVAVVSDGEI 576
G+TV+V+ H ++ + + + + DGE+
Sbjct: 196 GKTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 102/231 (44%), Gaps = 41/231 (17%)
Query: 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKISIVS-----QEPVLFN 450
EV+L ++W + + +K ++L++ G + L+GPSG GK + + +EP
Sbjct: 6 EVKLINIWKRFG---DVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQ 62
Query: 451 CSIEEN-IAYGCDGKASSADIENAAKMANAHDFISN--------FPEKYQT--------- 492
IE+N +A G + A + ++ + FP K +
Sbjct: 63 IYIEDNLVADPEKGVFVPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKR 122
Query: 493 ------------FVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQ 540
+ + LSGGQ+QRVA+ RA++ P++ L DE S LDA+ +
Sbjct: 123 VREVAEXLGLTELLNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXR 182
Query: 541 DAMDSLMK--GRTVLVIAH-RLSTVQSADTVAVVSDGEIVESGTHEELLSK 588
+ L + G T + + H ++ D +AV + GE+ + GT +E+ K
Sbjct: 183 AELKKLQRQLGVTTIYVTHDQVEAXTXGDRIAVXNKGELQQVGTPDEVYYK 233
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 88/199 (44%), Gaps = 33/199 (16%)
Query: 414 VLKGITLKLLSGSKIALVGPSGGGK-----------------------ISIVSQEPVLFN 450
VLK I K+ G +A+ G +G GK IS SQ +
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMP 112
Query: 451 CSIEENIAYGCDGKASSAD---IENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQ 507
+I+ENI S D + K + IS F EK +GE G+ LS GQ+
Sbjct: 113 GTIKENII------GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSEGQQA 166
Query: 508 RVAIARALMMNPRILLLDEATSALDAESEY-LVQDAMDSLMKGRTVLVIAHRLSTVQSAD 566
++++ARA+ + + LLD LD +E + + + LM +T +++ ++ ++ AD
Sbjct: 167 KISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKAD 226
Query: 567 TVAVVSDGEIVESGTHEEL 585
+ ++ +G GT EL
Sbjct: 227 KILILHEGSSYFYGTFSEL 245
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 499 VRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAH 557
+ LSGGQKQR+AIA L + R L LDE S LD S+ + ++SL +G+ ++++ H
Sbjct: 139 LNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIILVTH 198
Query: 558 RLSTVQSADTVAVVSDGEIVESGTHEELLSK 588
L + D + +S+G I G+ EE + +
Sbjct: 199 ELEYLDDMDFILHISNGTIDFCGSWEEFVER 229
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 90/213 (42%), Gaps = 48/213 (22%)
Query: 413 MVLKGITLKLLSGSKIALVGPSGGGK---------------------------------- 438
+V K I L + G + VGPSG GK
Sbjct: 17 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERG 76
Query: 439 ISIVSQEPVLF-NCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQ--TFVG 495
+ +V Q L+ + S+ EN+++G + ++ N ++ E Q +
Sbjct: 77 VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQR--------VNQVAEVLQLAHLLD 128
Query: 496 ERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVL 553
+ LSGGQ+QRVAI R L+ P + LLDE S LDA ++ + L K GRT++
Sbjct: 129 RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMI 188
Query: 554 VIAH-RLSTVQSADTVAVVSDGEIVESGTHEEL 585
+ H ++ + AD + V+ G + + G EL
Sbjct: 189 YVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 90/213 (42%), Gaps = 48/213 (22%)
Query: 413 MVLKGITLKLLSGSKIALVGPSGGGK---------------------------------- 438
+V K I L + G + VGPSG GK
Sbjct: 17 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERG 76
Query: 439 ISIVSQEPVLF-NCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQ--TFVG 495
+ +V Q L+ + S+ EN+++G + ++ N ++ E Q +
Sbjct: 77 VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQR--------VNQVAEVLQLAHLLD 128
Query: 496 ERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVL 553
+ LSGGQ+QRVAI R L+ P + LLDE S LDA ++ + L K GRT++
Sbjct: 129 RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMI 188
Query: 554 VIAH-RLSTVQSADTVAVVSDGEIVESGTHEEL 585
+ H ++ + AD + V+ G + + G EL
Sbjct: 189 YVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 90/213 (42%), Gaps = 48/213 (22%)
Query: 413 MVLKGITLKLLSGSKIALVGPSGGGK---------------------------------- 438
+V K I L + G + VGPSG GK
Sbjct: 17 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERG 76
Query: 439 ISIVSQEPVLF-NCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQ--TFVG 495
+ +V Q L+ + S+ EN+++G + ++ N ++ E Q +
Sbjct: 77 VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQR--------VNQVAEVLQLAHLLD 128
Query: 496 ERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVL 553
+ LSGGQ+QRVAI R L+ P + LLD+ S LDA ++ + L K GRT++
Sbjct: 129 RKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMI 188
Query: 554 VIAH-RLSTVQSADTVAVVSDGEIVESGTHEEL 585
+ H ++ + AD + V+ G + + G EL
Sbjct: 189 YVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 13/156 (8%)
Query: 439 ISIVSQEP--VLFNCSIEENIAYGC-DGKASSADIENAAKMANAHDFISNFPEKYQTFVG 495
I IV Q+P LF+ S+ +++++G + K +I A I + +K
Sbjct: 86 IGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHC-- 143
Query: 496 ERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVL 553
LS GQK+RVAIA L+M P++L+LDE T+ LD + + + K G T++
Sbjct: 144 -----LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITII 198
Query: 554 VIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 588
+ H + V D V V+ +G ++ G +E+ ++
Sbjct: 199 IATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 501 LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEY-LVQDAMDSLMKGRTVLVIAHRL 559
LSGG+K+RVAIA ++ P IL+LDE LD E + L++ G+TV++I+H +
Sbjct: 141 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDI 200
Query: 560 STV-QSADTVAVVSDGEIVESGTHEELLSK 588
TV D V V+ G+ V GT E L K
Sbjct: 201 ETVINHVDRVVVLEKGKKVFDGTRMEFLEK 230
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 501 LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEY-LVQDAMDSLMKGRTVLVIAHRL 559
LSGG+K+RVAIA ++ P IL+LDE LD E + L++ G+TV++I+H +
Sbjct: 139 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDI 198
Query: 560 STV-QSADTVAVVSDGEIVESGTHEELLSK 588
TV D V V+ G+ V GT E L K
Sbjct: 199 ETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 89/177 (50%), Gaps = 20/177 (11%)
Query: 421 KLLSGSKIALVGPSGGGKISIVSQEPVLF-NCSIEENIAYGCD-GKASSADIEN----AA 474
KL++ + + P I++V Q L+ + ++ +NIA+ K +I+ A
Sbjct: 65 KLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVA 124
Query: 475 KMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAE 534
++ + ++ P + LSGGQ+QRVA+ RA++ P++ L+DE S LDA+
Sbjct: 125 ELLGLTELLNRKPRE-----------LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAK 173
Query: 535 SEYLVQDAMDSLMK--GRTVLVIAH-RLSTVQSADTVAVVSDGEIVESGTHEELLSK 588
++ + L + G T + + H ++ + D +AV++ G + + G+ +E+ K
Sbjct: 174 LRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 56/86 (65%), Gaps = 3/86 (3%)
Query: 499 VRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESE-YLVQDAMDSLMKGR-TVLVIA 556
++LSGG KQRV IA AL+++P +L+LDE TSALD ++ +++Q + + T++ +
Sbjct: 153 LQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKMLKITLIFVT 212
Query: 557 HRLST-VQSADTVAVVSDGEIVESGT 581
H ++ + AD VAV+ G +VE +
Sbjct: 213 HDIAVAAELADKVAVIYGGNLVEYNS 238
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 87/157 (55%), Gaps = 20/157 (12%)
Query: 438 KISIVSQEPVLF-NCSIEENIAYGC-DGKASSAD----IENAAKMANAHDFISNFPEKYQ 491
++ + QE VLF + ++ NIAYG +GK +A IE ++ + +P +
Sbjct: 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHE-- 138
Query: 492 TFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--G 549
LSGGQ+QR A+ARAL +P ++LLDE SALD + +++ M + ++ G
Sbjct: 139 ---------LSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANG 189
Query: 550 RTVLVIAH-RLSTVQSADTVAVVSDGEIVESGTHEEL 585
++ + ++H R +Q AD +AV+ G I+++ + EL
Sbjct: 190 KSAVFVSHDREEALQYADRIAVMKQGRILQTASPHEL 226
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 8/90 (8%)
Query: 500 RLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM----KGRTVLVI 555
LSGGQ + V I RALM NP+++++DE + + + L D + ++ KG T L+I
Sbjct: 153 ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV---APGLAHDIFNHVLELKAKGITFLII 209
Query: 556 AHRLSTV-QSADTVAVVSDGEIVESGTHEE 584
HRL V D + V+ +G+I+ G EE
Sbjct: 210 EHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 8/90 (8%)
Query: 500 RLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM----KGRTVLVI 555
LSGGQ + V I RALM NP+++++DE + + + L D + ++ KG T L+I
Sbjct: 153 ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV---APGLAHDIFNHVLELKAKGITFLII 209
Query: 556 AHRLSTV-QSADTVAVVSDGEIVESGTHEE 584
HRL V D + V+ +G+I+ G EE
Sbjct: 210 EHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 93/221 (42%), Gaps = 56/221 (25%)
Query: 414 VLKGITLKLLSGSKIALVGPSGGGKISIV----------------------SQEP----- 446
++ ++L + SG +A++GP+G GK +++ S +P
Sbjct: 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALAR 85
Query: 447 ----------VLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGE 496
+ F S+ E I G S D + ++ D ++ + +
Sbjct: 86 TRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLA---------LAQ 136
Query: 497 RGVR-LSGGQKQRVAIARALMM------NPRILLLDEATSALDAESEYLVQDAMDSLMKG 549
R R LSGG++QRV +AR L PR L LDE TSALD + + L +
Sbjct: 137 RDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQ 196
Query: 550 R--TVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLS 587
V + H L+ AD + +++ G++V GT EE+L+
Sbjct: 197 EPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLN 237
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 93/228 (40%), Gaps = 44/228 (19%)
Query: 393 QDGEVELDDVW-----------FAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKISI 441
++ V+ DD+W A + + +L+ I+ + G ++ L+G +G GK ++
Sbjct: 4 ENSHVKKDDIWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTL 63
Query: 442 VSQEPVLFNCSIEENI---------------AYGC----------------DGKASSAD- 469
+S L N E I A+G D A+ +D
Sbjct: 64 LSAFLRLLNTEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQ 123
Query: 470 -IENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEAT 528
I A I FP K + + G LS G KQ + +AR+++ +ILLLDE +
Sbjct: 124 EIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPS 183
Query: 529 SALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEI 576
+ LD + +++ + TV++ R+ + D V+ + ++
Sbjct: 184 AHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKV 231
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 8/90 (8%)
Query: 500 RLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM----KGRTVLVI 555
LSGGQ + V I RALM NP+++++D+ + + + L D + ++ KG T L+I
Sbjct: 153 ELSGGQMKLVEIGRALMTNPKMIVMDQPIAGV---APGLAHDIFNHVLELKAKGITFLII 209
Query: 556 AHRLSTV-QSADTVAVVSDGEIVESGTHEE 584
HRL V D + V+ +G+I+ G EE
Sbjct: 210 EHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 85/192 (44%), Gaps = 29/192 (15%)
Query: 421 KLLSGSKIALVGPSGGGKISIVS-----QEPVLFNCSIEENIAYGCDGKASSADIENAA- 474
++ G I +VGP+G GK + V +EP + +AY + A+ E
Sbjct: 378 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAY--KPQYIKAEYEGTVY 435
Query: 475 ---KMANAHDFISNFPEKYQTFV---------GERGVR-LSGGQKQRVAIARALMMNPRI 521
++ SNF Y+T + +R V LSGG+ QRVAIA L+ + I
Sbjct: 436 ELLSKIDSSKLNSNF---YKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADI 492
Query: 522 LLLDEATSALDAESEYLVQDAMDSLMKG--RTVLVIAHRLSTVQSADTVAVVSDGEIVES 579
LLDE ++ LD E V A+ LM+ +T LV+ H + + +V +G E
Sbjct: 493 YLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEG---EP 549
Query: 580 GTHEELLSKGGV 591
G H L G+
Sbjct: 550 GRHGRALPPMGM 561
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 500 RLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHR 558
+LSGG+ QRVAIA AL+ DE +S LD V + L +G+ VLV+ H
Sbjct: 228 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 287
Query: 559 LSTVQSADTVAVVSDGE 575
L+ + V V GE
Sbjct: 288 LAVLDYLSDVIHVVYGE 304
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 85/192 (44%), Gaps = 29/192 (15%)
Query: 421 KLLSGSKIALVGPSGGGKISIVS-----QEPVLFNCSIEENIAYGCDGKASSADIENAA- 474
++ G I +VGP+G GK + V +EP + +AY + A+ E
Sbjct: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAY--KPQYIKAEYEGTVY 421
Query: 475 ---KMANAHDFISNFPEKYQTFV---------GERGVR-LSGGQKQRVAIARALMMNPRI 521
++ SNF Y+T + +R V LSGG+ QRVAIA L+ + I
Sbjct: 422 ELLSKIDSSKLNSNF---YKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADI 478
Query: 522 LLLDEATSALDAESEYLVQDAMDSLMKG--RTVLVIAHRLSTVQSADTVAVVSDGEIVES 579
LLDE ++ LD E V A+ LM+ +T LV+ H + + +V +G E
Sbjct: 479 YLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEG---EP 535
Query: 580 GTHEELLSKGGV 591
G H L G+
Sbjct: 536 GRHGRALPPMGM 547
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 500 RLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHR 558
+LSGG+ QRVAIA AL+ DE +S LD V + L +G+ VLV+ H
Sbjct: 214 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 273
Query: 559 LSTVQSADTVAVVSDGE 575
L+ + V V GE
Sbjct: 274 LAVLDYLSDVIHVVYGE 290
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 75/173 (43%), Gaps = 26/173 (15%)
Query: 424 SGSKIALVGPSGGGKISIVS-----QEPVLFNCSIEENIAYGCDGKASSADIENAA---- 474
G I +VGP+G GK + V +EP IE ++ + AD E
Sbjct: 311 KGEVIGIVGPNGIGKTTFVKXLAGVEEPT--EGKIEWDLTVAYKPQYIKADYEGTVYELL 368
Query: 475 KMANAHDFISNFPEKYQT-FVGERGV---------RLSGGQKQRVAIARALMMNPRILLL 524
+A SNF Y+T + G+ LSGG+ QRVAIA L+ + I LL
Sbjct: 369 SKIDASKLNSNF---YKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLL 425
Query: 525 DEATSALDAESEYLVQDAMDSLMKG--RTVLVIAHRLSTVQSADTVAVVSDGE 575
DE ++ LD E V A+ L + +T LV+ H + + V +GE
Sbjct: 426 DEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEHDVLXIDYVSDRLXVFEGE 478
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 501 LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSL-MKGRTVLVIAHRL 559
LSGG+ QRVAIA AL+ N DE +S LD A+ L +G++VLV+ H L
Sbjct: 159 LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDL 218
Query: 560 STVQSADTVAVVSDGE 575
+ + + V GE
Sbjct: 219 AVLDYLSDIIHVVYGE 234
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
Query: 499 VRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKG-RTVLVIAH 557
V SGG+K+R I + ++ P + +LDE+ S LD ++ +V D ++SL G R+ +++ H
Sbjct: 163 VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTH 222
Query: 558 --RLSTVQSADTVAVVSDGEIVESG 580
R+ D V V+ G IV+SG
Sbjct: 223 YQRILDYIKPDYVHVLYQGRIVKSG 247
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
Query: 499 VRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKG-RTVLVIAH 557
V SGG+K+R I + ++ P + +LDE+ S LD ++ +V D ++SL G R+ +++ H
Sbjct: 144 VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTH 203
Query: 558 --RLSTVQSADTVAVVSDGEIVESG 580
R+ D V V+ G IV+SG
Sbjct: 204 YQRILDYIKPDYVHVLYQGRIVKSG 228
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 88/217 (40%), Gaps = 40/217 (18%)
Query: 415 LKGITLKLLSGSKIALVGPSGGGKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAA 474
+KGI LK+ G + L+G +G GK + +S L + I G D A + N
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRX 81
Query: 475 KMANAHDFISNFPE--------------------------------KYQTFVGERGVRLS 502
+A + FPE + + + + G LS
Sbjct: 82 GIALVPEGRRIFPELTVYENLXXGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLS 141
Query: 503 GGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK----GRTVLVIAHR 558
GG++Q +AI RAL P++L DE + L + LV + + + K G T+L++
Sbjct: 142 GGEQQXLAIGRALXSRPKLLXXDEPSLGL---APILVSEVFEVIQKINQEGTTILLVEQN 198
Query: 559 -LSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTA 594
L ++ A V+ G+IV G ELL V A
Sbjct: 199 ALGALKVAHYGYVLETGQIVLEGKASELLDNEXVRKA 235
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 501 LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRT-VLVIAHRL 559
LSGG++QRVAIARAL P +L DE T LD+ + V D + +G T ++++ H
Sbjct: 141 LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHER 200
Query: 560 STVQSADTVAVVSDGEIV 577
+ + DG++V
Sbjct: 201 ELAELTHRTLEMKDGKVV 218
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 66/132 (50%), Gaps = 22/132 (16%)
Query: 476 MANAHDFISNFPE---KYQTF---------VGERGVRLSGGQKQRVAIARALMM--NPRI 521
+ +A DF ++ P+ K +T +G+ LSGG+ QRV +A L N R
Sbjct: 809 VEDALDFFASIPKIKRKLETLYDVGLGYXKLGQPATTLSGGEAQRVKLAAELHRRSNGRT 868
Query: 522 L-LLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAVVSD------ 573
L +LDE T+ L + + D + L+ G TVLVI H L +++AD + +
Sbjct: 869 LYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRG 928
Query: 574 GEIVESGTHEEL 585
G+IV GT EE+
Sbjct: 929 GQIVAVGTPEEV 940
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 10/113 (8%)
Query: 482 FISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL--MMNPRILLLDEATSALDA-ESEYL 538
F+ N Y T G LSGG+ QR+ +A + + + +LDE + L +++ L
Sbjct: 487 FLQNVGLDYLTLSRSAGT-LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRL 545
Query: 539 VQDAMDSLMKGRTVLVIAHRLSTVQSADTV------AVVSDGEIVESGTHEEL 585
+ G T++V+ H T +AD + A + GE+V +GT EE+
Sbjct: 546 IATLKSXRDLGNTLIVVEHDEDTXLAADYLIDIGPGAGIHGGEVVAAGTPEEV 598
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 65/130 (50%), Gaps = 22/130 (16%)
Query: 478 NAHDFISNFPE---KYQTF---------VGERGVRLSGGQKQRVAIARALMM--NPRIL- 522
+A DF ++ P+ K +T +G+ LSGG+ QRV +A L N R L
Sbjct: 811 DALDFFASIPKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLY 870
Query: 523 LLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAVVSD------GE 575
+LDE T+ L + + D + L+ G TVLVI H L +++AD + + G+
Sbjct: 871 ILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQ 930
Query: 576 IVESGTHEEL 585
IV GT EE+
Sbjct: 931 IVAVGTPEEV 940
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 10/115 (8%)
Query: 482 FISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL--MMNPRILLLDEATSALDAESEYLV 539
F+ N Y T G LSGG+ QR+ +A + + + +LDE + L +
Sbjct: 487 FLQNVGLDYLTLSRSAGT-LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRL 545
Query: 540 QDAMDSLMK-GRTVLVIAHRLSTVQSADTV------AVVSDGEIVESGTHEELLS 587
+ S+ G T++V+ H T+ +AD + A + GE+V +GT EE+++
Sbjct: 546 IATLKSMRDLGNTLIVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMN 600
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 65/130 (50%), Gaps = 22/130 (16%)
Query: 478 NAHDFISNFPE---KYQTF---------VGERGVRLSGGQKQRVAIARALMM--NPRIL- 522
+A DF ++ P+ K +T +G+ LSGG+ QRV +A L N R L
Sbjct: 509 DALDFFASIPKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLY 568
Query: 523 LLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAVVSD------GE 575
+LDE T+ L + + D + L+ G TVLVI H L +++AD + + G+
Sbjct: 569 ILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQ 628
Query: 576 IVESGTHEEL 585
IV GT EE+
Sbjct: 629 IVAVGTPEEV 638
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 10/115 (8%)
Query: 482 FISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL--MMNPRILLLDEATSALDAESEYLV 539
F+ N Y T G LSGG+ QR+ +A + + + +LDE + L +
Sbjct: 185 FLQNVGLDYLTLSRSAGT-LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRL 243
Query: 540 QDAMDSLMK-GRTVLVIAHRLSTVQSADTV------AVVSDGEIVESGTHEELLS 587
+ S+ G T++V+ H T+ +AD + A + GE+V +GT EE+++
Sbjct: 244 IATLKSMRDLGNTLIVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMN 298
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 105/242 (43%), Gaps = 54/242 (22%)
Query: 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKIS---IVSQEPV----- 447
++E+ D+W S +LKG+ L + G AL+GP+G GK + I++ +P
Sbjct: 3 QLEIRDLW---ASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVER 59
Query: 448 ---------LFNCSIEEN------IAYGCDGKASSADIENAAKMA---------NAHDFI 483
+ S +E +A+ + I N ++A +F
Sbjct: 60 GEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFW 119
Query: 484 S---------NFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAE 534
+ ++ E Y + G SGG+K+R I + L++ P +LDE S LD +
Sbjct: 120 TKVKKALELLDWDESYLSRYLNEG--FSGGEKKRNEILQLLVLEPTYAVLDETDSGLDID 177
Query: 535 SEYLVQDAMDSLMKGRT--VLVIAH--RLSTVQSADTVAVVSDGEIVESGTHE---ELLS 587
+ +V +++ M+G LVI H R+ D V V+ DG +V +G E EL +
Sbjct: 178 ALKVVARGVNA-MRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPELALELEA 236
Query: 588 KG 589
KG
Sbjct: 237 KG 238
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 80/206 (38%), Gaps = 41/206 (19%)
Query: 423 LSGSKIALVGPSGGGKISIVSQEPVLFNCSIEENIAYGCDGKASSAD-IENAAKMANAHD 481
L G + G KI ++ V C + C GK + + +E K N D
Sbjct: 711 LKGGRCEACQGQGYVKIEMLFLPDVYVECDV-------CKGKRYNRETLEITYKGKNISD 763
Query: 482 -----------FISNFPEKYQTF------------VGERGVRLSGGQKQRVAIARALMMN 518
F N P +T +G+ LSGG+ QR+ +A L
Sbjct: 764 ILDMTVDEALEFFKNIPSIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKR 823
Query: 519 PR---ILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAVVSD- 573
+ +LDE T L E + + + L+ +G TV+VI H L +++AD + +
Sbjct: 824 DTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPE 883
Query: 574 -----GEIVESGTHEELLSKGGVYTA 594
G IV +GT EE+ YT
Sbjct: 884 GGKEGGYIVATGTPEEIAKNPHSYTG 909
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 9/95 (9%)
Query: 501 LSGGQKQRVAIARALM--MNPRILLLDEATSALDA-ESEYLVQDAMDSLMKGRTVLVIAH 557
LSGG+ QR+ +A + + I +LDE T L ++E L++ G TV+V+ H
Sbjct: 465 LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEH 524
Query: 558 RLSTVQSADTVAVV------SDGEIVESGTHEELL 586
+++AD + + + G +V GT +ELL
Sbjct: 525 DEEVIRNADHIIDIGPGGGTNGGRVVFQGTVDELL 559
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 501 LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLS 560
LSGGQ+Q + IARA+ +++LLDE TSALD ++ +V + L + + + V+ +
Sbjct: 129 LSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVV---FT 185
Query: 561 TVQSADTVAVVS 572
T Q VA+ +
Sbjct: 186 THQPNQVVAIAN 197
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 64/142 (45%), Gaps = 22/142 (15%)
Query: 479 AHDFISNFPEKYQTF------------VGERGVRLSGGQKQRVAIARALMMNPR---ILL 523
AHDF ++ ++ +G+ LSGG+ QR+ +A L + R + +
Sbjct: 697 AHDFFADESAIFRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYV 756
Query: 524 LDEATSALD-AESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTV------AVVSDGEI 576
LDE T+ L A+ E L + + + G TV+ + H++ V ++D V A G +
Sbjct: 757 LDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVLDIGPGAGEDGGRL 816
Query: 577 VESGTHEELLSKGGVYTALVKR 598
V GT E+ G TA R
Sbjct: 817 VAQGTPAEVAQAAGSVTAPYLR 838
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 8/103 (7%)
Query: 489 KYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALD---AESEYLVQDAMDS 545
K Q ++G LS G+KQRV IARAL P++L+LDE + LD ES + D++
Sbjct: 154 KAQQYIG----YLSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARESLLSILDSLSD 209
Query: 546 LMKGRTVLVIAHRLSTVQSA-DTVAVVSDGEIVESGTHEELLS 587
+ + H + + + + ++ DG+ ++ G E++L+
Sbjct: 210 SYPTLAXIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILT 252
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 501 LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLS 560
LSGGQK ++ +A P +++LDE T+ LD +S + A+ G V++I H
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSAE 959
Query: 561 TVQS-ADTVAVVSDGEIVESG 580
++ + V V DG + SG
Sbjct: 960 FTKNLTEEVWAVKDGRMTPSG 980
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 501 LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAH 557
LSGG K ++A+ARA++ N ILLLDE T+ LD + + + +++ G T + I+H
Sbjct: 549 LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC--GITSITISH 603
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Query: 393 QDGEVELDDVWFAYP--SRPNHMVLKGITLKLLSGSKIALVGPSGGGKISIVS 443
Q V++ ++ F YP S+P + I + S+IA++GP+G GK ++++
Sbjct: 668 QKAIVKVTNMEFQYPGTSKPQ---ITDINFQCSLSSRIAVIGPNGAGKSTLIN 717
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 501 LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAH 557
LSGG K ++A+ARA++ N ILLLDE T+ LD + + + +++ G T + I+H
Sbjct: 549 LSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC--GITSITISH 603
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 501 LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLS 560
LSGGQK ++ +A P +++LDE T+ LD +S + A+ G V++I H
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSAE 959
Query: 561 TVQS-ADTVAVVSDGEIVESG 580
++ + V V DG SG
Sbjct: 960 FTKNLTEEVWAVKDGRXTPSG 980
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 501 LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAH 557
LSGG K ++A+ARA++ N ILLLDE T+ LD + + + +++ G T + I+H
Sbjct: 543 LSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC--GITSITISH 597
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 501 LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLS 560
LSGGQK ++ +A P +++LDE T+ LD +S + A+ G V++I H
Sbjct: 896 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSAE 953
Query: 561 TVQS-ADTVAVVSDGEIVESG 580
++ + V V DG SG
Sbjct: 954 FTKNLTEEVWAVKDGRXTPSG 974
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 16/141 (11%)
Query: 470 IENAAK----MANAHDFISNFPEKYQTFV--GERGVRLSGGQKQRVAIARALMMNPR--- 520
IE AA+ +A H ++ + +V G+ LSGG+ QRV +A L
Sbjct: 827 IEEAAEFFEPIAGVHRYLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRT 886
Query: 521 ILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTV------AVVSD 573
+ +LDE T+ L + + + ++ L+ KG TV+VI H L ++++D +
Sbjct: 887 VYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDWIIDLGPEGGAGG 946
Query: 574 GEIVESGTHEELLSKGGVYTA 594
G +V GT E++ + YT
Sbjct: 947 GTVVAQGTPEDVAAVPASYTG 967
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 501 LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGR--TVLVIAHR 558
LSGG+ Q++ IA L + +LD+ +S LD E Y+V A+ + + R +I H
Sbjct: 386 LSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHD 445
Query: 559 LSTVQSADTVAVVSDGEIVESG 580
LS +V GE ++G
Sbjct: 446 LSIHDYIADRIIVFKGEPEKAG 467
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 76/185 (41%), Gaps = 33/185 (17%)
Query: 404 FAYPSRPNHMVL---------KGITLKLLSGSKIALVGPSGGGKISIVSQEPVLFNCSIE 454
F P+ N+ +L K LK+L+G I P+ G S V ++ VL +
Sbjct: 17 FGLPTPKNNTILGVLGKNGVGKTTVLKILAGEII----PNFGDPNSKVGKDEVLKRFRGK 72
Query: 455 ENIAYGCDGKASSADIENAAKMAN-AHDFISNFPEKYQTFVGERGVR------------- 500
E Y + ++ I + + A F+ + T + ERG +
Sbjct: 73 EIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLW 132
Query: 501 ------LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLV 554
LSGG QR+ +A +L+ + + D+ +S LD + A+ L+K + V+V
Sbjct: 133 NKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIV 192
Query: 555 IAHRL 559
+ H L
Sbjct: 193 VDHDL 197
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 59/103 (57%), Gaps = 9/103 (8%)
Query: 494 VGERGVRLSGGQKQRVAIARALMM-----NP--RILLLDEATSALDAESEYLVQDAMDSL 546
+G +LSGG+ QRV +A ++ NP ++LLLD+ ++LD + + + +L
Sbjct: 120 LGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSAL 179
Query: 547 -MKGRTVLVIAHRLS-TVQSADTVAVVSDGEIVESGTHEELLS 587
+G +++ +H L+ T++ A ++ G+++ SG EE+L+
Sbjct: 180 SQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 57/103 (55%), Gaps = 9/103 (8%)
Query: 494 VGERGVRLSGGQKQRVAIARALMM-----NP--RILLLDEATSALDAESEYLVQDAMDSL 546
+G +LSGG+ QRV +A ++ NP ++LLLDE ++LD + + + +L
Sbjct: 120 LGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSAL 179
Query: 547 -MKGRTVLVIAHRLS-TVQSADTVAVVSDGEIVESGTHEELLS 587
+G ++ +H L+ T++ A ++ G+ + SG EE+L+
Sbjct: 180 CQQGLAIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVLT 222
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 57/103 (55%), Gaps = 9/103 (8%)
Query: 494 VGERGVRLSGGQKQRVAIARALMM-----NP--RILLLDEATSALDAESEYLVQDAMDSL 546
+G +LSGG+ QRV +A ++ NP ++LLLDE ++LD + + + +L
Sbjct: 120 LGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSAL 179
Query: 547 -MKGRTVLVIAHRLS-TVQSADTVAVVSDGEIVESGTHEELLS 587
+G ++ +H L+ T++ A ++ G+ + SG EE+L+
Sbjct: 180 SQQGLAIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVLT 222
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 58/103 (56%), Gaps = 9/103 (8%)
Query: 494 VGERGVRLSGGQKQRVAIARALMM-----NP--RILLLDEATSALDAESEYLVQDAMDSL 546
+G +LSGG+ QRV +A ++ NP ++LLLD+ +LD + + + +L
Sbjct: 120 LGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSAL 179
Query: 547 -MKGRTVLVIAHRLS-TVQSADTVAVVSDGEIVESGTHEELLS 587
+G +++ +H L+ T++ A ++ G+++ SG EE+L+
Sbjct: 180 SQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 37/58 (63%)
Query: 501 LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHR 558
LS G +RV +A L++N I +LD+ A+D +S++ V ++ ++K + +++I+ R
Sbjct: 134 LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSR 191
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 487 PEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDS- 545
P + + + LSGG+ QRVAI AL + I L+DE ++ LD+E + +
Sbjct: 454 PLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRF 513
Query: 546 -LMKGRTVLVIAH 557
L +T ++ H
Sbjct: 514 ILHNKKTAFIVEH 526
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 500 RLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHR 558
+LSGG+ QR AI + + + + DE +S LD + + SL+ + V+ + H
Sbjct: 221 KLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHD 280
Query: 559 LSTVQS-ADTVAVV 571
LS + +D V ++
Sbjct: 281 LSVLDYLSDFVCII 294
>pdb|3GZU|A Chain A, Vp7 Recoated Rotavirus Dlp
pdb|3GZU|B Chain B, Vp7 Recoated Rotavirus Dlp
Length = 800
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 77 VALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAE 112
VA +A V++I+ P FG + + +GD +TP Q AE
Sbjct: 345 VACQLAIVNTIIYPAFGMQRMHYRNGDPQTPFQIAE 380
>pdb|3ZGX|A Chain A, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
pdb|3ZGX|B Chain B, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
Length = 426
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Query: 501 LSGGQKQRVAIA---RALMMNP-RILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIA 556
LSGG++ AIA L + P +LDE +ALD + + + +VI
Sbjct: 329 LSGGERALTAIALLFSILKVRPVPFCVLDEVEAALDEANVFRFAQYLKKYSSDTQFIVIT 388
Query: 557 HRLSTVQSADTVAVVSDGEIVESG 580
HR T++ AD + V+ + ESG
Sbjct: 389 HRKGTMEEADVLYGVT---MQESG 409
>pdb|3KZ4|A Chain A, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|3KZ4|B Chain B, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|4F5X|A Chain A, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4F5X|B Chain B, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
Length = 880
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 77 VALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAE 112
VA +A V++I+ P FG + + +GD +TP Q AE
Sbjct: 425 VACQLAIVNTIIYPAFGMQRMHYRNGDPQTPFQIAE 460
>pdb|1NT2|A Chain A, Crystal Structure Of FibrillarinNOP5P COMPLEX
Length = 210
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 369 RRVFQLLDRVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKI 428
R V+ L D + + K G+ DG E W + S+ M+LKG LKL ++
Sbjct: 6 RNVYLLDDTLVTKSKYGSHYGEKVFDGYRE----WVPWRSKLAAMILKGHRLKLRGDERV 61
Query: 429 ALVGPSGGGKIS 440
+G + G +S
Sbjct: 62 LYLGAASGTTVS 73
>pdb|3JVV|A Chain A, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|B Chain B, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|C Chain C, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVU|A Chain A, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|B Chain B, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|C Chain C, Crystal Structure Of Unliganded P. Aeruginosa Pilt
Length = 356
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 4/102 (3%)
Query: 244 ELSHKTQXXXXXXXXXXEESFGAIRTVRSFAQEKNEISRYSEKVD-ETLKLGLQQAKVVG 302
E H+++ ++ G +RS +E +I E D ET++L L A+
Sbjct: 163 EFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVGEMRDLETIRLALTAAETGH 222
Query: 303 LFFGGLN---AASTLSVIVVVIYGANLTITGSMTPGALTSFI 341
L FG L+ AA T+ +V V + SM +L S I
Sbjct: 223 LVFGTLHTTSAAKTIDRVVDVFPAEEKAMVRSMLSESLQSVI 264
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,623,856
Number of Sequences: 62578
Number of extensions: 518515
Number of successful extensions: 1682
Number of sequences better than 100.0: 105
Number of HSP's better than 100.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1404
Number of HSP's gapped (non-prelim): 202
length of query: 607
length of database: 14,973,337
effective HSP length: 104
effective length of query: 503
effective length of database: 8,465,225
effective search space: 4258008175
effective search space used: 4258008175
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)